Query 042290
Match_columns 425
No_of_seqs 323 out of 2714
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 07:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-52 4.9E-57 424.5 25.5 342 21-385 131-504 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.7E-41 1.6E-45 372.0 30.7 314 13-358 119-453 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.7E-41 6E-46 350.0 20.8 284 19-350 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.8E-38 6.1E-43 325.2 28.1 307 14-355 120-450 (591)
5 2qen_A Walker-type ATPase; unk 99.8 1.8E-19 6.1E-24 171.8 20.1 294 14-351 8-349 (350)
6 1w5s_A Origin recognition comp 99.8 1.7E-19 6E-24 176.0 16.4 316 14-346 18-387 (412)
7 2fna_A Conserved hypothetical 99.8 9.6E-19 3.3E-23 167.1 19.5 292 16-350 11-356 (357)
8 2v1u_A Cell division control p 99.7 2.8E-15 9.7E-20 144.6 22.0 297 16-333 17-351 (387)
9 1fnn_A CDC6P, cell division co 99.7 3.7E-15 1.3E-19 144.0 22.6 299 16-334 15-352 (389)
10 2qby_B CDC6 homolog 3, cell di 99.7 8.7E-16 3E-20 148.3 17.5 292 17-334 19-340 (384)
11 2qby_A CDC6 homolog 1, cell di 99.6 5.4E-15 1.9E-19 142.5 16.6 300 14-333 16-348 (386)
12 1njg_A DNA polymerase III subu 99.5 1.3E-13 4.4E-18 123.9 13.7 198 18-231 23-231 (250)
13 2chg_A Replication factor C sm 99.5 1.2E-12 4.1E-17 115.8 14.8 189 17-229 16-205 (226)
14 1hqc_A RUVB; extended AAA-ATPa 99.3 2E-12 6.7E-17 121.7 9.5 269 18-332 12-324 (324)
15 1sxj_B Activator 1 37 kDa subu 99.3 4.2E-12 1.4E-16 119.2 10.2 189 17-229 20-211 (323)
16 1iqp_A RFCS; clamp loader, ext 99.2 8.8E-11 3E-15 110.3 9.8 187 17-230 24-214 (327)
17 1jr3_A DNA polymerase III subu 99.1 5.5E-10 1.9E-14 107.0 13.0 196 18-229 16-222 (373)
18 2chq_A Replication factor C sm 99.1 1.4E-09 4.7E-14 101.7 14.2 183 18-228 17-204 (319)
19 3te6_A Regulatory protein SIR3 99.0 4.2E-09 1.4E-13 97.5 14.2 176 18-195 20-212 (318)
20 3pfi_A Holliday junction ATP-d 99.0 1.1E-08 3.7E-13 96.6 16.1 258 17-334 28-314 (338)
21 1sxj_D Activator 1 41 kDa subu 98.9 1.3E-08 4.3E-13 96.6 12.4 196 17-227 36-234 (353)
22 3uk6_A RUVB-like 2; hexameric 98.9 4.1E-08 1.4E-12 93.7 15.8 202 17-229 43-304 (368)
23 1jbk_A CLPB protein; beta barr 98.8 1.8E-09 6.3E-14 92.7 4.9 47 17-69 21-67 (195)
24 3pvs_A Replication-associated 98.8 3.5E-08 1.2E-12 96.4 14.1 200 18-248 26-245 (447)
25 1sxj_E Activator 1 40 kDa subu 98.8 1.6E-08 5.3E-13 96.2 11.0 197 18-229 14-238 (354)
26 1sxj_A Activator 1 95 kDa subu 98.8 4.3E-08 1.5E-12 97.9 12.7 195 18-228 39-253 (516)
27 3bos_A Putative DNA replicatio 98.8 4E-09 1.4E-13 94.2 4.3 176 18-229 28-218 (242)
28 3h4m_A Proteasome-activating n 98.7 4.2E-08 1.4E-12 90.2 10.6 191 14-228 13-231 (285)
29 1a5t_A Delta prime, HOLB; zinc 98.7 2.2E-07 7.4E-12 87.5 15.1 174 24-229 8-206 (334)
30 3syl_A Protein CBBX; photosynt 98.7 2.9E-08 1E-12 92.3 8.1 162 19-195 32-218 (309)
31 2qz4_A Paraplegin; AAA+, SPG7, 98.7 3.9E-07 1.3E-11 82.5 15.3 190 17-228 5-222 (262)
32 1d2n_A N-ethylmaleimide-sensit 98.7 3.8E-07 1.3E-11 83.1 14.9 174 17-220 32-229 (272)
33 3u61_B DNA polymerase accessor 98.7 1.2E-07 4E-12 88.9 11.7 179 18-226 26-214 (324)
34 2z4s_A Chromosomal replication 98.6 1.4E-07 4.9E-12 92.1 11.3 203 18-246 105-331 (440)
35 1sxj_C Activator 1 40 kDa subu 98.6 1.9E-07 6.5E-12 88.1 10.0 179 18-227 25-212 (340)
36 3eie_A Vacuolar protein sortin 98.6 7E-07 2.4E-11 83.5 13.5 193 14-229 14-229 (322)
37 1xwi_A SKD1 protein; VPS4B, AA 98.5 3.2E-06 1.1E-10 78.9 17.4 194 15-230 9-225 (322)
38 3n70_A Transport activator; si 98.5 9.6E-08 3.3E-12 78.3 6.0 115 19-163 2-116 (145)
39 2qp9_X Vacuolar protein sortin 98.5 1.5E-06 5.1E-11 82.4 14.5 191 16-229 49-262 (355)
40 3pxg_A Negative regulator of g 98.5 4.2E-07 1.4E-11 89.5 10.5 149 18-195 180-339 (468)
41 1qvr_A CLPB protein; coiled co 98.5 2.6E-07 8.9E-12 97.9 8.7 155 18-193 170-344 (854)
42 1l8q_A Chromosomal replication 98.5 8.7E-07 3E-11 82.9 11.3 181 18-226 11-206 (324)
43 3d8b_A Fidgetin-like protein 1 98.4 2.7E-06 9.3E-11 80.7 14.4 191 17-230 83-297 (357)
44 2zan_A Vacuolar protein sortin 98.4 3.6E-06 1.2E-10 82.2 15.4 194 15-230 131-347 (444)
45 2p65_A Hypothetical protein PF 98.4 2.1E-07 7.2E-12 79.3 5.6 47 17-69 21-67 (187)
46 3b9p_A CG5977-PA, isoform A; A 98.4 2.5E-06 8.5E-11 78.7 12.1 191 15-229 18-234 (297)
47 2c9o_A RUVB-like 1; hexameric 98.3 1.5E-06 5E-11 85.4 10.0 100 125-228 297-410 (456)
48 1in4_A RUVB, holliday junction 98.3 1E-05 3.6E-10 75.9 15.5 180 18-229 25-224 (334)
49 3co5_A Putative two-component 98.3 2.3E-07 7.8E-12 75.9 3.5 111 18-162 4-115 (143)
50 3vfd_A Spastin; ATPase, microt 98.3 1E-05 3.5E-10 77.7 15.6 190 17-229 114-327 (389)
51 3hu3_A Transitional endoplasmi 98.3 3.3E-06 1.1E-10 83.2 12.2 187 18-228 204-415 (489)
52 3pxi_A Negative regulator of g 98.3 1.6E-06 5.5E-11 90.7 10.0 150 18-194 180-338 (758)
53 3cf0_A Transitional endoplasmi 98.3 1E-05 3.4E-10 74.8 14.1 186 14-223 11-223 (301)
54 4fcw_A Chaperone protein CLPB; 98.3 2.5E-06 8.7E-11 79.1 9.3 136 18-162 17-169 (311)
55 3ec2_A DNA replication protein 98.3 8.7E-07 3E-11 75.4 5.6 122 23-163 19-143 (180)
56 2gno_A DNA polymerase III, gam 98.3 4.8E-06 1.6E-10 77.0 10.9 149 22-194 1-152 (305)
57 1ojl_A Transcriptional regulat 98.3 9.6E-07 3.3E-11 81.8 6.1 160 18-192 2-188 (304)
58 1r6b_X CLPA protein; AAA+, N-t 98.2 4.4E-06 1.5E-10 87.5 11.5 157 18-194 186-362 (758)
59 2bjv_A PSP operon transcriptio 98.2 1.4E-06 4.6E-11 79.1 5.8 132 18-162 6-150 (265)
60 4b4t_J 26S protease regulatory 98.2 2.1E-05 7E-10 74.7 14.0 179 18-220 148-353 (405)
61 2w58_A DNAI, primosome compone 98.1 1.6E-06 5.5E-11 75.1 4.8 127 18-163 25-159 (202)
62 1ofh_A ATP-dependent HSL prote 98.1 6.4E-06 2.2E-10 76.3 8.7 51 18-68 15-73 (310)
63 1lv7_A FTSH; alpha/beta domain 98.1 6.4E-05 2.2E-09 67.6 14.7 188 16-227 10-224 (257)
64 4b4t_K 26S protease regulatory 98.1 1.4E-05 4.8E-10 76.9 10.1 182 15-220 169-378 (428)
65 4b4t_M 26S protease regulatory 98.0 8.3E-06 2.8E-10 78.6 7.9 181 16-220 179-386 (434)
66 3cf2_A TER ATPase, transitiona 98.0 0.00012 4E-09 75.9 15.9 183 15-221 201-407 (806)
67 4b4t_H 26S protease regulatory 98.0 0.0001 3.5E-09 71.0 14.3 179 18-220 209-414 (467)
68 2r62_A Cell division protease 98.0 3.4E-06 1.2E-10 76.5 3.9 160 16-194 9-196 (268)
69 4b4t_L 26S protease subunit RP 97.9 0.00013 4.4E-09 70.3 14.4 182 15-220 178-386 (437)
70 3pxi_A Negative regulator of g 97.9 3.8E-05 1.3E-09 80.3 10.7 156 18-193 491-674 (758)
71 2ce7_A Cell division protein F 97.9 0.00011 3.9E-09 71.8 12.7 181 17-221 15-221 (476)
72 2r44_A Uncharacterized protein 97.8 3.3E-05 1.1E-09 72.3 8.1 153 18-195 27-199 (331)
73 4b4t_I 26S protease regulatory 97.8 0.00012 4.1E-09 69.8 11.1 181 16-220 180-387 (437)
74 2kjq_A DNAA-related protein; s 97.7 9.8E-06 3.4E-10 66.5 2.4 86 46-162 37-124 (149)
75 1r6b_X CLPA protein; AAA+, N-t 97.7 2.2E-05 7.5E-10 82.2 5.6 133 18-162 458-607 (758)
76 2qgz_A Helicase loader, putati 97.6 1.9E-05 6.6E-10 73.1 2.9 56 24-83 134-189 (308)
77 3t15_A Ribulose bisphosphate c 97.6 9.1E-05 3.1E-09 68.0 7.4 27 43-69 34-60 (293)
78 3m6a_A ATP-dependent protease 97.6 0.00011 3.7E-09 73.6 8.2 164 19-194 82-266 (543)
79 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 0.00022 7.5E-09 70.2 9.6 44 18-69 22-65 (500)
80 1ypw_A Transitional endoplasmi 97.6 0.00059 2E-08 71.5 13.5 161 15-194 201-385 (806)
81 2cvh_A DNA repair and recombin 97.6 0.00042 1.4E-08 60.4 10.3 84 44-133 19-115 (220)
82 1qvr_A CLPB protein; coiled co 97.6 6.8E-05 2.3E-09 79.4 6.1 135 19-162 559-710 (854)
83 2dhr_A FTSH; AAA+ protein, hex 97.5 0.00052 1.8E-08 67.5 11.4 180 14-221 27-236 (499)
84 1ixz_A ATP-dependent metallopr 97.5 0.001 3.5E-08 59.4 12.3 182 16-221 14-221 (254)
85 1iy2_A ATP-dependent metallopr 97.5 0.0024 8.2E-08 57.9 14.6 184 14-221 36-245 (278)
86 1jr3_D DNA polymerase III, del 97.5 0.0017 5.9E-08 60.8 13.9 159 44-227 17-184 (343)
87 1um8_A ATP-dependent CLP prote 97.4 0.00092 3.2E-08 63.6 11.2 51 18-68 21-95 (376)
88 2vhj_A Ntpase P4, P4; non- hyd 97.3 6.9E-05 2.4E-09 68.8 2.3 68 45-133 123-192 (331)
89 2b8t_A Thymidine kinase; deoxy 97.2 9.5E-05 3.2E-09 64.7 1.7 112 44-163 11-126 (223)
90 2x8a_A Nuclear valosin-contain 97.2 0.0033 1.1E-07 56.9 11.7 156 17-194 9-191 (274)
91 3hr8_A Protein RECA; alpha and 97.0 0.0012 4E-08 62.0 7.1 96 27-133 46-149 (356)
92 1v5w_A DMC1, meiotic recombina 97.0 0.0033 1.1E-07 58.9 10.0 50 44-93 121-174 (343)
93 3io5_A Recombination and repai 96.9 0.0037 1.3E-07 57.2 9.4 83 46-133 29-121 (333)
94 1rz3_A Hypothetical protein rb 96.9 0.0011 3.6E-08 57.1 5.4 44 22-68 2-45 (201)
95 1n0w_A DNA repair protein RAD5 96.9 0.0034 1.2E-07 55.4 8.8 49 44-92 23-75 (243)
96 1xp8_A RECA protein, recombina 96.7 0.0039 1.3E-07 58.8 8.3 83 44-133 73-162 (366)
97 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0017 5.7E-08 56.9 5.3 113 46-163 24-168 (235)
98 2z43_A DNA repair and recombin 96.7 0.0037 1.3E-07 58.1 7.6 57 44-101 106-166 (324)
99 2zr9_A Protein RECA, recombina 96.7 0.003 1E-07 59.3 7.0 83 44-133 60-149 (349)
100 2i1q_A DNA repair and recombin 96.6 0.0036 1.2E-07 58.1 7.2 88 44-132 97-213 (322)
101 3cf2_A TER ATPase, transitiona 96.6 0.0037 1.3E-07 64.8 7.7 162 14-194 473-661 (806)
102 3hws_A ATP-dependent CLP prote 96.5 0.0018 6E-08 61.3 4.3 50 19-68 16-74 (363)
103 1g5t_A COB(I)alamin adenosyltr 96.5 0.00071 2.4E-08 57.5 1.3 114 46-163 29-163 (196)
104 1u94_A RECA protein, recombina 96.4 0.0039 1.3E-07 58.6 6.2 82 44-132 62-150 (356)
105 2px0_A Flagellar biosynthesis 96.4 0.0076 2.6E-07 55.1 7.8 86 44-132 104-191 (296)
106 1g8p_A Magnesium-chelatase 38 96.3 0.0012 4.2E-08 61.9 2.1 47 16-68 22-68 (350)
107 3c8u_A Fructokinase; YP_612366 96.3 0.0029 1E-07 54.6 4.3 39 26-68 7-45 (208)
108 1qhx_A CPT, protein (chloramph 96.3 0.0017 5.7E-08 54.5 2.6 23 46-68 4-26 (178)
109 1zp6_A Hypothetical protein AT 96.3 0.0025 8.7E-08 54.0 3.6 25 44-68 8-32 (191)
110 1ly1_A Polynucleotide kinase; 96.3 0.002 7E-08 53.9 2.9 22 46-67 3-24 (181)
111 1gvn_B Zeta; postsegregational 96.2 0.0039 1.3E-07 56.8 4.9 25 43-67 31-55 (287)
112 3kb2_A SPBC2 prophage-derived 96.2 0.0019 6.5E-08 53.7 2.5 23 46-68 2-24 (173)
113 3ice_A Transcription terminati 96.2 0.006 2E-07 57.3 6.0 42 45-87 174-216 (422)
114 3lw7_A Adenylate kinase relate 96.2 0.0023 7.9E-08 53.2 2.8 20 46-65 2-21 (179)
115 1vma_A Cell division protein F 96.1 0.015 5E-07 53.4 8.2 104 26-132 83-195 (306)
116 3tqc_A Pantothenate kinase; bi 96.1 0.0056 1.9E-07 56.5 5.3 45 21-67 70-114 (321)
117 2rhm_A Putative kinase; P-loop 96.1 0.0034 1.2E-07 53.2 3.6 25 44-68 4-28 (193)
118 2p5t_B PEZT; postsegregational 96.1 0.0048 1.7E-07 55.1 4.7 41 27-68 15-55 (253)
119 1odf_A YGR205W, hypothetical 3 96.1 0.0032 1.1E-07 57.4 3.6 80 43-122 29-117 (290)
120 4a1f_A DNAB helicase, replicat 96.1 0.025 8.5E-07 52.6 9.6 53 44-100 45-97 (338)
121 3lda_A DNA repair protein RAD5 96.1 0.019 6.7E-07 54.7 9.0 57 44-101 177-237 (400)
122 3uie_A Adenylyl-sulfate kinase 96.1 0.0036 1.2E-07 53.6 3.6 26 44-69 24-49 (200)
123 2xxa_A Signal recognition part 96.1 0.039 1.3E-06 53.2 11.1 57 27-84 79-138 (433)
124 3vaa_A Shikimate kinase, SK; s 96.1 0.0026 8.8E-08 54.5 2.6 24 45-68 25-48 (199)
125 1kgd_A CASK, peripheral plasma 96.1 0.0032 1.1E-07 53.0 3.1 23 46-68 6-28 (180)
126 3dm5_A SRP54, signal recogniti 96.0 0.046 1.6E-06 52.6 11.5 26 44-69 99-124 (443)
127 1pzn_A RAD51, DNA repair and r 96.0 0.012 3.9E-07 55.3 7.1 46 44-89 130-179 (349)
128 3bh0_A DNAB-like replicative h 96.0 0.034 1.2E-06 51.3 10.2 53 44-100 67-119 (315)
129 1nks_A Adenylate kinase; therm 96.0 0.0035 1.2E-07 53.1 2.9 24 46-69 2-25 (194)
130 3upu_A ATP-dependent DNA helic 95.9 0.0079 2.7E-07 58.8 5.8 23 47-69 47-69 (459)
131 3trf_A Shikimate kinase, SK; a 95.9 0.0031 1E-07 53.2 2.5 24 45-68 5-28 (185)
132 3kl4_A SRP54, signal recogniti 95.9 0.026 8.9E-07 54.2 9.1 27 43-69 95-121 (433)
133 3tau_A Guanylate kinase, GMP k 95.9 0.0039 1.3E-07 53.8 3.0 25 44-68 7-31 (208)
134 3t61_A Gluconokinase; PSI-biol 95.9 0.0029 1E-07 54.2 2.2 24 45-68 18-41 (202)
135 1knq_A Gluconate kinase; ALFA/ 95.9 0.0053 1.8E-07 51.2 3.7 24 44-67 7-30 (175)
136 1kag_A SKI, shikimate kinase I 95.9 0.0032 1.1E-07 52.4 2.3 23 46-68 5-27 (173)
137 1tue_A Replication protein E1; 95.9 0.0057 1.9E-07 52.2 3.8 37 27-68 45-81 (212)
138 4eun_A Thermoresistant glucoki 95.8 0.0041 1.4E-07 53.3 2.9 25 44-68 28-52 (200)
139 3asz_A Uridine kinase; cytidin 95.8 0.0051 1.7E-07 53.1 3.5 25 44-68 5-29 (211)
140 1ex7_A Guanylate kinase; subst 95.8 0.0021 7.2E-08 54.4 0.9 22 46-67 2-23 (186)
141 3iij_A Coilin-interacting nucl 95.8 0.0036 1.2E-07 52.6 2.2 24 45-68 11-34 (180)
142 1sky_E F1-ATPase, F1-ATP synth 95.8 0.022 7.7E-07 55.0 7.9 50 47-97 153-203 (473)
143 1tev_A UMP-CMP kinase; ploop, 95.8 0.0047 1.6E-07 52.4 2.9 24 45-68 3-26 (196)
144 1ukz_A Uridylate kinase; trans 95.8 0.0054 1.8E-07 52.6 3.3 25 43-67 13-37 (203)
145 1uf9_A TT1252 protein; P-loop, 95.8 0.0053 1.8E-07 52.4 3.3 25 43-67 6-30 (203)
146 3tr0_A Guanylate kinase, GMP k 95.7 0.0049 1.7E-07 52.8 3.0 22 46-67 8-29 (205)
147 2qt1_A Nicotinamide riboside k 95.7 0.0072 2.5E-07 52.0 4.1 26 43-68 19-44 (207)
148 1kht_A Adenylate kinase; phosp 95.7 0.0043 1.5E-07 52.4 2.6 23 46-68 4-26 (192)
149 2c95_A Adenylate kinase 1; tra 95.7 0.0047 1.6E-07 52.5 2.8 24 45-68 9-32 (196)
150 3jvv_A Twitching mobility prot 95.7 0.0022 7.6E-08 60.3 0.8 111 46-166 124-234 (356)
151 2qor_A Guanylate kinase; phosp 95.7 0.0035 1.2E-07 53.9 2.0 25 44-68 11-35 (204)
152 2ze6_A Isopentenyl transferase 95.7 0.0047 1.6E-07 55.1 2.9 23 46-68 2-24 (253)
153 3umf_A Adenylate kinase; rossm 95.7 0.0053 1.8E-07 53.3 3.1 26 43-68 27-52 (217)
154 1y63_A LMAJ004144AAA protein; 95.7 0.0048 1.7E-07 52.1 2.7 24 44-67 9-32 (184)
155 4gp7_A Metallophosphoesterase; 95.7 0.0056 1.9E-07 51.0 3.0 23 45-67 9-31 (171)
156 2j41_A Guanylate kinase; GMP, 95.6 0.0057 1.9E-07 52.5 3.0 24 45-68 6-29 (207)
157 1qf9_A UMP/CMP kinase, protein 95.6 0.0071 2.4E-07 51.1 3.6 25 44-68 5-29 (194)
158 2bdt_A BH3686; alpha-beta prot 95.6 0.0062 2.1E-07 51.5 3.2 22 46-67 3-24 (189)
159 2cdn_A Adenylate kinase; phosp 95.6 0.0059 2E-07 52.3 3.0 25 44-68 19-43 (201)
160 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0058 2E-07 54.8 3.1 24 45-68 4-27 (260)
161 2plr_A DTMP kinase, probable t 95.6 0.0061 2.1E-07 52.5 3.1 24 46-69 5-28 (213)
162 3a00_A Guanylate kinase, GMP k 95.6 0.0045 1.5E-07 52.4 2.2 23 46-68 2-24 (186)
163 3cm0_A Adenylate kinase; ATP-b 95.6 0.0062 2.1E-07 51.3 3.0 23 45-67 4-26 (186)
164 3ney_A 55 kDa erythrocyte memb 95.6 0.0055 1.9E-07 52.3 2.6 25 44-68 18-42 (197)
165 1zuh_A Shikimate kinase; alpha 95.6 0.0052 1.8E-07 50.9 2.4 25 44-68 6-30 (168)
166 1ye8_A Protein THEP1, hypothet 95.6 0.0064 2.2E-07 51.1 2.9 23 47-69 2-24 (178)
167 3dzd_A Transcriptional regulat 95.5 0.019 6.6E-07 54.2 6.6 132 18-163 129-273 (368)
168 2yvu_A Probable adenylyl-sulfa 95.5 0.0079 2.7E-07 50.7 3.5 26 44-69 12-37 (186)
169 3tlx_A Adenylate kinase 2; str 95.5 0.008 2.7E-07 53.3 3.6 25 44-68 28-52 (243)
170 2jaq_A Deoxyguanosine kinase; 95.5 0.0058 2E-07 52.2 2.6 22 47-68 2-23 (205)
171 1lvg_A Guanylate kinase, GMP k 95.5 0.0051 1.7E-07 52.7 2.2 22 46-67 5-26 (198)
172 2iyv_A Shikimate kinase, SK; t 95.5 0.0043 1.5E-07 52.3 1.7 22 47-68 4-25 (184)
173 2bwj_A Adenylate kinase 5; pho 95.5 0.006 2.1E-07 51.9 2.6 23 46-68 13-35 (199)
174 1via_A Shikimate kinase; struc 95.5 0.0057 1.9E-07 51.1 2.4 22 47-68 6-27 (175)
175 2vli_A Antibiotic resistance p 95.5 0.0043 1.5E-07 52.1 1.6 24 45-68 5-28 (183)
176 1nn5_A Similar to deoxythymidy 95.4 0.007 2.4E-07 52.2 2.9 24 45-68 9-32 (215)
177 2pez_A Bifunctional 3'-phospho 95.4 0.0077 2.6E-07 50.5 3.1 25 44-68 4-28 (179)
178 1aky_A Adenylate kinase; ATP:A 95.4 0.0065 2.2E-07 52.9 2.6 24 45-68 4-27 (220)
179 1uj2_A Uridine-cytidine kinase 95.4 0.0074 2.5E-07 53.8 3.1 26 43-68 20-45 (252)
180 2bbw_A Adenylate kinase 4, AK4 95.4 0.0071 2.4E-07 53.7 2.9 23 45-67 27-49 (246)
181 2if2_A Dephospho-COA kinase; a 95.4 0.0069 2.4E-07 51.9 2.8 21 47-67 3-23 (204)
182 1cke_A CK, MSSA, protein (cyti 95.4 0.0067 2.3E-07 52.9 2.7 22 46-67 6-27 (227)
183 1jjv_A Dephospho-COA kinase; P 95.4 0.0085 2.9E-07 51.4 3.2 22 46-67 3-24 (206)
184 3fwy_A Light-independent proto 95.4 0.0084 2.9E-07 55.3 3.4 41 43-85 46-86 (314)
185 1q57_A DNA primase/helicase; d 95.4 0.071 2.4E-06 52.6 10.3 54 44-100 241-294 (503)
186 1e6c_A Shikimate kinase; phosp 95.4 0.0053 1.8E-07 51.0 1.8 22 47-68 4-25 (173)
187 1ny5_A Transcriptional regulat 95.4 0.037 1.3E-06 52.6 7.9 134 18-162 137-281 (387)
188 2wwf_A Thymidilate kinase, put 95.4 0.0074 2.5E-07 52.0 2.7 25 44-68 9-33 (212)
189 1xjc_A MOBB protein homolog; s 95.3 0.0074 2.5E-07 50.1 2.5 26 44-69 3-28 (169)
190 3e70_C DPA, signal recognition 95.3 0.05 1.7E-06 50.4 8.4 26 43-68 127-152 (328)
191 2ffh_A Protein (FFH); SRP54, s 95.3 0.043 1.5E-06 52.7 8.1 26 44-69 97-122 (425)
192 3k1j_A LON protease, ATP-depen 95.3 0.012 4.1E-07 59.6 4.4 44 18-69 41-84 (604)
193 1g41_A Heat shock protein HSLU 95.3 0.016 5.3E-07 55.9 4.9 51 18-68 15-73 (444)
194 2ga8_A Hypothetical 39.9 kDa p 95.3 0.015 5.1E-07 54.1 4.6 44 23-68 4-47 (359)
195 1zd8_A GTP:AMP phosphotransfer 95.2 0.0079 2.7E-07 52.6 2.6 24 45-68 7-30 (227)
196 3aez_A Pantothenate kinase; tr 95.2 0.01 3.6E-07 54.6 3.5 26 43-68 88-113 (312)
197 2pt5_A Shikimate kinase, SK; a 95.2 0.0083 2.8E-07 49.5 2.6 22 47-68 2-23 (168)
198 2jeo_A Uridine-cytidine kinase 95.2 0.011 3.8E-07 52.4 3.5 24 44-67 24-47 (245)
199 1rj9_A FTSY, signal recognitio 95.2 0.01 3.5E-07 54.5 3.3 25 44-68 101-125 (304)
200 2hf9_A Probable hydrogenase ni 95.2 0.015 5.1E-07 50.5 4.3 25 44-68 37-61 (226)
201 2pbr_A DTMP kinase, thymidylat 95.2 0.0086 2.9E-07 50.7 2.6 22 47-68 2-23 (195)
202 1znw_A Guanylate kinase, GMP k 95.2 0.0096 3.3E-07 51.3 2.9 23 45-67 20-42 (207)
203 1s96_A Guanylate kinase, GMP k 95.2 0.0095 3.2E-07 51.9 2.9 25 44-68 15-39 (219)
204 1htw_A HI0065; nucleotide-bind 95.2 0.012 4.2E-07 48.2 3.4 24 45-68 33-56 (158)
205 3e1s_A Exodeoxyribonuclease V, 95.2 0.013 4.6E-07 58.7 4.3 106 46-163 205-316 (574)
206 2v54_A DTMP kinase, thymidylat 95.1 0.0096 3.3E-07 50.9 2.8 24 46-69 5-28 (204)
207 1j8m_F SRP54, signal recogniti 95.1 0.045 1.5E-06 49.9 7.4 86 45-132 98-189 (297)
208 1z6g_A Guanylate kinase; struc 95.1 0.0082 2.8E-07 52.2 2.4 23 45-67 23-45 (218)
209 1ls1_A Signal recognition part 95.1 0.051 1.8E-06 49.5 7.8 86 44-132 97-189 (295)
210 3cmu_A Protein RECA, recombina 95.1 0.018 6.2E-07 65.1 5.5 82 44-132 1426-1514(2050)
211 2f6r_A COA synthase, bifunctio 95.1 0.013 4.4E-07 53.2 3.7 25 43-67 73-97 (281)
212 2ged_A SR-beta, signal recogni 95.1 0.016 5.4E-07 48.9 4.1 26 43-68 46-71 (193)
213 1gtv_A TMK, thymidylate kinase 95.1 0.0061 2.1E-07 52.6 1.5 23 47-69 2-24 (214)
214 3a8t_A Adenylate isopentenyltr 95.1 0.014 4.6E-07 54.1 3.8 25 44-68 39-63 (339)
215 2grj_A Dephospho-COA kinase; T 95.1 0.012 4.1E-07 50.0 3.2 25 43-67 10-34 (192)
216 2z0h_A DTMP kinase, thymidylat 95.1 0.0099 3.4E-07 50.4 2.7 22 47-68 2-23 (197)
217 1zak_A Adenylate kinase; ATP:A 95.1 0.0087 3E-07 52.1 2.3 24 45-68 5-28 (222)
218 2ck3_D ATP synthase subunit be 95.1 0.074 2.5E-06 51.3 8.9 53 46-99 154-207 (482)
219 3fb4_A Adenylate kinase; psych 95.1 0.01 3.4E-07 51.4 2.7 22 47-68 2-23 (216)
220 1m7g_A Adenylylsulfate kinase; 95.0 0.012 4.1E-07 50.8 3.1 26 44-69 24-49 (211)
221 1sq5_A Pantothenate kinase; P- 95.0 0.027 9.1E-07 51.8 5.6 24 44-67 79-102 (308)
222 3be4_A Adenylate kinase; malar 95.0 0.0087 3E-07 51.9 2.2 23 46-68 6-28 (217)
223 1zd9_A ADP-ribosylation factor 95.0 0.14 4.8E-06 42.8 9.8 23 46-68 23-45 (188)
224 2f1r_A Molybdopterin-guanine d 95.0 0.011 3.6E-07 49.4 2.6 24 46-69 3-26 (171)
225 4e22_A Cytidylate kinase; P-lo 95.0 0.012 4.1E-07 52.4 3.0 23 45-67 27-49 (252)
226 3dl0_A Adenylate kinase; phosp 95.0 0.011 3.7E-07 51.2 2.7 21 47-67 2-22 (216)
227 4a74_A DNA repair and recombin 95.0 0.013 4.6E-07 50.9 3.3 45 44-88 24-72 (231)
228 2q6t_A DNAB replication FORK h 95.0 0.08 2.7E-06 51.3 9.1 54 44-100 199-252 (444)
229 1vht_A Dephospho-COA kinase; s 94.9 0.014 4.9E-07 50.5 3.2 23 45-67 4-26 (218)
230 2j37_W Signal recognition part 94.8 0.15 5.2E-06 49.9 10.7 41 28-68 81-124 (504)
231 3exa_A TRNA delta(2)-isopenten 94.8 0.015 5.2E-07 53.1 3.2 24 45-68 3-26 (322)
232 2wsm_A Hydrogenase expression/ 94.8 0.019 6.4E-07 49.7 3.7 41 22-68 13-53 (221)
233 3l0o_A Transcription terminati 94.8 0.093 3.2E-06 49.3 8.4 52 29-86 164-216 (427)
234 2ehv_A Hypothetical protein PH 94.8 0.014 4.9E-07 51.5 2.9 23 45-67 30-52 (251)
235 3p32_A Probable GTPase RV1496/ 94.8 0.027 9.3E-07 52.9 5.0 26 43-68 77-102 (355)
236 2qmh_A HPR kinase/phosphorylas 94.8 0.016 5.6E-07 49.1 3.0 23 46-68 35-57 (205)
237 3foz_A TRNA delta(2)-isopenten 94.7 0.018 6.1E-07 52.5 3.3 25 44-68 9-33 (316)
238 3lnc_A Guanylate kinase, GMP k 94.7 0.011 3.8E-07 51.8 2.0 22 46-67 28-50 (231)
239 4akg_A Glutathione S-transfera 94.7 0.13 4.6E-06 60.1 11.2 144 48-217 1270-1452(2695)
240 2dr3_A UPF0273 protein PH0284; 94.6 0.02 6.9E-07 50.4 3.6 39 45-85 23-61 (247)
241 1fx0_B ATP synthase beta chain 94.6 0.084 2.9E-06 51.2 8.1 52 46-98 166-218 (498)
242 3b9q_A Chloroplast SRP recepto 94.6 0.019 6.4E-07 52.6 3.4 26 43-68 98-123 (302)
243 3ake_A Cytidylate kinase; CMP 94.6 0.016 5.3E-07 49.7 2.7 22 47-68 4-25 (208)
244 1u0j_A DNA replication protein 94.6 0.03 1E-06 50.0 4.5 36 29-68 92-127 (267)
245 2zej_A Dardarin, leucine-rich 94.6 0.016 5.5E-07 48.6 2.6 22 47-68 4-25 (184)
246 1yrb_A ATP(GTP)binding protein 94.6 0.023 7.8E-07 50.7 3.8 27 42-68 11-37 (262)
247 2i3b_A HCR-ntpase, human cance 94.5 0.015 5.1E-07 49.3 2.3 23 47-69 3-25 (189)
248 3zvl_A Bifunctional polynucleo 94.5 0.017 5.8E-07 55.6 3.0 26 43-68 256-281 (416)
249 3d3q_A TRNA delta(2)-isopenten 94.5 0.017 5.8E-07 53.5 2.9 23 46-68 8-30 (340)
250 1np6_A Molybdopterin-guanine d 94.5 0.017 5.7E-07 48.3 2.6 25 44-68 5-29 (174)
251 1e4v_A Adenylate kinase; trans 94.5 0.017 5.9E-07 49.9 2.8 22 47-68 2-23 (214)
252 3r20_A Cytidylate kinase; stru 94.5 0.016 5.4E-07 50.9 2.5 24 45-68 9-32 (233)
253 2r6a_A DNAB helicase, replicat 94.5 0.12 4.2E-06 50.1 9.2 51 44-97 202-252 (454)
254 3crm_A TRNA delta(2)-isopenten 94.5 0.02 6.7E-07 52.8 3.2 24 45-68 5-28 (323)
255 2pcj_A ABC transporter, lipopr 94.5 0.018 6.3E-07 50.2 2.9 22 46-67 31-52 (224)
256 1ak2_A Adenylate kinase isoenz 94.5 0.018 6E-07 50.6 2.8 24 45-68 16-39 (233)
257 1ltq_A Polynucleotide kinase; 94.5 0.018 6.1E-07 52.7 2.9 22 46-67 3-24 (301)
258 2wji_A Ferrous iron transport 94.5 0.024 8.1E-07 46.6 3.4 23 46-68 4-26 (165)
259 2onk_A Molybdate/tungstate ABC 94.5 0.018 6.2E-07 50.8 2.8 23 46-68 25-47 (240)
260 3llm_A ATP-dependent RNA helic 94.5 0.069 2.3E-06 46.8 6.6 21 46-66 77-97 (235)
261 3tif_A Uncharacterized ABC tra 94.5 0.019 6.4E-07 50.5 2.9 22 46-67 32-53 (235)
262 1a7j_A Phosphoribulokinase; tr 94.5 0.0089 3E-07 54.5 0.8 25 44-68 4-28 (290)
263 3f9v_A Minichromosome maintena 94.5 0.014 4.9E-07 58.8 2.4 51 18-68 295-350 (595)
264 2xb4_A Adenylate kinase; ATP-b 94.4 0.017 5.9E-07 50.3 2.6 22 47-68 2-23 (223)
265 3sr0_A Adenylate kinase; phosp 94.4 0.018 6.3E-07 49.5 2.7 73 47-133 2-84 (206)
266 2wjg_A FEOB, ferrous iron tran 94.4 0.031 1E-06 46.8 4.0 25 44-68 6-30 (188)
267 3nwj_A ATSK2; P loop, shikimat 94.3 0.015 5.3E-07 51.6 2.0 23 46-68 49-71 (250)
268 2cbz_A Multidrug resistance-as 94.3 0.022 7.5E-07 50.2 2.9 23 46-68 32-54 (237)
269 1oix_A RAS-related protein RAB 94.3 0.023 8E-07 48.0 3.0 24 45-68 29-52 (191)
270 2eyu_A Twitching motility prot 94.2 0.027 9.3E-07 50.4 3.5 111 44-165 24-135 (261)
271 1mv5_A LMRA, multidrug resista 94.2 0.027 9.4E-07 49.8 3.4 25 44-68 27-51 (243)
272 2og2_A Putative signal recogni 94.2 0.026 9E-07 52.9 3.4 26 43-68 155-180 (359)
273 3end_A Light-independent proto 94.2 0.039 1.3E-06 50.5 4.5 55 29-87 27-81 (307)
274 1b0u_A Histidine permease; ABC 94.2 0.024 8.1E-07 50.8 2.9 23 46-68 33-55 (262)
275 3gfo_A Cobalt import ATP-bindi 94.1 0.023 7.9E-07 51.2 2.8 22 46-67 35-56 (275)
276 2dyk_A GTP-binding protein; GT 94.1 0.027 9.4E-07 45.6 3.0 23 46-68 2-24 (161)
277 3b85_A Phosphate starvation-in 94.1 0.018 6E-07 49.7 1.9 23 46-68 23-45 (208)
278 2fz4_A DNA repair protein RAD2 94.1 0.33 1.1E-05 42.5 10.3 115 23-160 95-226 (237)
279 1ji0_A ABC transporter; ATP bi 94.1 0.025 8.5E-07 49.9 2.8 23 46-68 33-55 (240)
280 3cmu_A Protein RECA, recombina 94.1 0.064 2.2E-06 60.8 6.6 83 44-133 382-471 (2050)
281 2lkc_A Translation initiation 94.1 0.044 1.5E-06 45.2 4.3 25 44-68 7-31 (178)
282 4eaq_A DTMP kinase, thymidylat 94.0 0.029 9.9E-07 49.1 3.2 27 44-70 25-51 (229)
283 2f9l_A RAB11B, member RAS onco 94.0 0.024 8.4E-07 48.1 2.7 23 46-68 6-28 (199)
284 1zu4_A FTSY; GTPase, signal re 94.0 0.03 1E-06 51.7 3.4 27 43-69 103-129 (320)
285 2vp4_A Deoxynucleoside kinase; 94.0 0.026 8.8E-07 49.4 2.9 25 43-67 18-42 (230)
286 1g6h_A High-affinity branched- 94.0 0.025 8.7E-07 50.5 2.8 23 46-68 34-56 (257)
287 4g1u_C Hemin import ATP-bindin 94.0 0.025 8.6E-07 50.7 2.8 23 46-68 38-60 (266)
288 2ocp_A DGK, deoxyguanosine kin 94.0 0.029 1E-06 49.4 3.2 24 45-68 2-25 (241)
289 2olj_A Amino acid ABC transpor 94.0 0.027 9.2E-07 50.4 2.9 24 45-68 50-73 (263)
290 2d2e_A SUFC protein; ABC-ATPas 94.0 0.027 9.3E-07 50.0 2.9 23 46-68 30-52 (250)
291 2pze_A Cystic fibrosis transme 94.0 0.027 9.1E-07 49.4 2.8 23 46-68 35-57 (229)
292 1cr0_A DNA primase/helicase; R 94.0 0.028 9.7E-07 51.2 3.1 50 45-97 35-84 (296)
293 1nlf_A Regulatory protein REPA 94.0 0.028 9.4E-07 50.8 3.0 23 45-67 30-52 (279)
294 2ff7_A Alpha-hemolysin translo 94.0 0.026 9.1E-07 50.0 2.8 23 46-68 36-58 (247)
295 3b5x_A Lipid A export ATP-bind 94.0 0.2 6.8E-06 50.3 9.6 24 45-68 369-392 (582)
296 1sgw_A Putative ABC transporte 94.0 0.022 7.6E-07 49.3 2.2 23 46-68 36-58 (214)
297 2v9p_A Replication protein E1; 93.9 0.027 9.2E-07 51.5 2.9 23 45-67 126-148 (305)
298 3bgw_A DNAB-like replicative h 93.9 0.15 5.3E-06 49.2 8.4 52 44-99 196-247 (444)
299 2yhs_A FTSY, cell division pro 93.9 0.06 2.1E-06 52.4 5.4 43 43-88 291-333 (503)
300 3cmw_A Protein RECA, recombina 93.9 0.048 1.6E-06 60.9 5.3 84 44-134 382-472 (1706)
301 3vr4_D V-type sodium ATPase su 93.9 0.084 2.9E-06 50.7 6.2 86 47-132 153-257 (465)
302 2ce2_X GTPase HRAS; signaling 93.9 0.028 9.6E-07 45.6 2.7 22 47-68 5-26 (166)
303 3oaa_A ATP synthase subunit al 93.9 0.17 5.7E-06 49.1 8.3 81 46-132 163-263 (513)
304 2ghi_A Transport protein; mult 93.9 0.029 1E-06 50.1 2.9 23 46-68 47-69 (260)
305 1svm_A Large T antigen; AAA+ f 93.8 0.029 1E-06 52.9 3.0 24 44-67 168-191 (377)
306 2zu0_C Probable ATP-dependent 93.8 0.031 1.1E-06 50.2 3.0 23 46-68 47-69 (267)
307 2ixe_A Antigen peptide transpo 93.8 0.03 1E-06 50.4 2.9 23 46-68 46-68 (271)
308 1vpl_A ABC transporter, ATP-bi 93.8 0.03 1E-06 49.9 2.9 23 46-68 42-64 (256)
309 2nzj_A GTP-binding protein REM 93.8 0.042 1.4E-06 45.1 3.7 24 45-68 4-27 (175)
310 3q72_A GTP-binding protein RAD 93.8 0.03 1E-06 45.6 2.7 22 47-68 4-25 (166)
311 2hxs_A RAB-26, RAS-related pro 93.8 0.047 1.6E-06 45.0 4.0 25 44-68 5-29 (178)
312 2qi9_C Vitamin B12 import ATP- 93.8 0.03 1E-06 49.7 2.8 23 46-68 27-49 (249)
313 2v3c_C SRP54, signal recogniti 93.8 0.036 1.2E-06 53.4 3.6 43 27-69 78-123 (432)
314 3gqb_B V-type ATP synthase bet 93.8 0.087 3E-06 50.6 6.1 87 46-132 148-260 (464)
315 2r8r_A Sensor protein; KDPD, P 93.7 0.084 2.9E-06 45.8 5.5 38 46-85 7-44 (228)
316 2gj8_A MNME, tRNA modification 93.7 0.04 1.4E-06 45.6 3.4 23 46-68 5-27 (172)
317 3eph_A TRNA isopentenyltransfe 93.7 0.034 1.2E-06 52.7 3.2 23 46-68 3-25 (409)
318 2nq2_C Hypothetical ABC transp 93.7 0.032 1.1E-06 49.7 2.8 23 46-68 32-54 (253)
319 3nh6_A ATP-binding cassette SU 93.7 0.035 1.2E-06 50.9 3.1 24 45-68 80-103 (306)
320 3q85_A GTP-binding protein REM 93.7 0.034 1.2E-06 45.5 2.8 21 47-67 4-24 (169)
321 2yz2_A Putative ABC transporte 93.7 0.033 1.1E-06 50.0 2.9 23 46-68 34-56 (266)
322 2aka_B Dynamin-1; fusion prote 93.7 0.081 2.8E-06 48.0 5.6 43 27-69 8-50 (299)
323 2ihy_A ABC transporter, ATP-bi 93.7 0.032 1.1E-06 50.4 2.8 23 46-68 48-70 (279)
324 1fzq_A ADP-ribosylation factor 93.6 0.046 1.6E-06 45.6 3.6 25 44-68 15-39 (181)
325 1q3t_A Cytidylate kinase; nucl 93.6 0.033 1.1E-06 48.9 2.8 25 43-67 14-38 (236)
326 2yv5_A YJEQ protein; hydrolase 93.6 0.05 1.7E-06 49.8 4.1 23 46-69 166-188 (302)
327 1svi_A GTP-binding protein YSX 93.6 0.044 1.5E-06 46.1 3.5 25 44-68 22-46 (195)
328 2erx_A GTP-binding protein DI- 93.6 0.036 1.2E-06 45.4 2.8 22 47-68 5-26 (172)
329 1z2a_A RAS-related protein RAB 93.6 0.044 1.5E-06 44.6 3.3 24 45-68 5-28 (168)
330 4edh_A DTMP kinase, thymidylat 93.5 0.1 3.5E-06 45.0 5.8 25 45-69 6-30 (213)
331 3sop_A Neuronal-specific septi 93.5 0.037 1.3E-06 49.7 3.0 21 47-67 4-24 (270)
332 1p5z_B DCK, deoxycytidine kina 93.5 0.025 8.4E-07 50.6 1.8 26 43-68 22-47 (263)
333 2cxx_A Probable GTP-binding pr 93.5 0.039 1.3E-06 46.1 3.0 22 47-68 3-24 (190)
334 3vkw_A Replicase large subunit 93.5 0.15 5.1E-06 49.0 7.2 107 42-164 158-271 (446)
335 3mfy_A V-type ATP synthase alp 93.5 0.28 9.5E-06 48.2 9.1 46 46-95 228-274 (588)
336 1nrj_B SR-beta, signal recogni 93.5 0.039 1.3E-06 47.5 2.9 25 44-68 11-35 (218)
337 1m7b_A RND3/RHOE small GTP-bin 93.5 0.036 1.2E-06 46.3 2.7 25 44-68 6-30 (184)
338 3kta_A Chromosome segregation 93.4 0.04 1.4E-06 46.1 2.9 22 46-67 27-48 (182)
339 1kao_A RAP2A; GTP-binding prot 93.4 0.036 1.2E-06 45.0 2.6 22 47-68 5-26 (167)
340 1z08_A RAS-related protein RAB 93.4 0.039 1.3E-06 45.1 2.8 24 45-68 6-29 (170)
341 3tqf_A HPR(Ser) kinase; transf 93.4 0.047 1.6E-06 45.1 3.1 22 46-67 17-38 (181)
342 3pqc_A Probable GTP-binding pr 93.4 0.05 1.7E-06 45.6 3.5 26 44-69 22-47 (195)
343 1ek0_A Protein (GTP-binding pr 93.4 0.037 1.3E-06 45.1 2.6 22 47-68 5-26 (170)
344 1ypw_A Transitional endoplasmi 93.4 0.038 1.3E-06 57.8 3.2 54 15-68 474-534 (806)
345 3ihw_A Centg3; RAS, centaurin, 93.4 0.036 1.2E-06 46.4 2.5 24 45-68 20-43 (184)
346 3con_A GTPase NRAS; structural 93.3 0.039 1.3E-06 46.3 2.7 23 46-68 22-44 (190)
347 1z0j_A RAB-22, RAS-related pro 93.3 0.038 1.3E-06 45.2 2.6 24 46-69 7-30 (170)
348 2r9v_A ATP synthase subunit al 93.3 0.23 7.7E-06 48.3 8.2 83 46-132 176-276 (515)
349 3lv8_A DTMP kinase, thymidylat 93.3 0.083 2.8E-06 46.4 4.8 37 44-81 26-62 (236)
350 1g16_A RAS-related protein SEC 93.3 0.04 1.4E-06 45.0 2.6 23 46-68 4-26 (170)
351 1f6b_A SAR1; gtpases, N-termin 93.3 0.053 1.8E-06 46.0 3.5 23 46-68 26-48 (198)
352 2iwr_A Centaurin gamma 1; ANK 93.3 0.034 1.2E-06 46.0 2.2 23 46-68 8-30 (178)
353 1c1y_A RAS-related protein RAP 93.3 0.042 1.4E-06 44.7 2.7 22 47-68 5-26 (167)
354 1r8s_A ADP-ribosylation factor 93.3 0.038 1.3E-06 44.9 2.4 20 48-67 3-22 (164)
355 2qe7_A ATP synthase subunit al 93.3 0.21 7.3E-06 48.4 8.0 83 46-132 163-263 (502)
356 2pjz_A Hypothetical protein ST 93.3 0.041 1.4E-06 49.2 2.8 22 46-67 31-52 (263)
357 2cjw_A GTP-binding protein GEM 93.2 0.041 1.4E-06 46.5 2.7 22 46-67 7-28 (192)
358 1cp2_A CP2, nitrogenase iron p 93.2 0.085 2.9E-06 47.1 4.9 39 46-86 2-40 (269)
359 3tw8_B RAS-related protein RAB 93.2 0.04 1.4E-06 45.5 2.6 25 44-68 8-32 (181)
360 3c5c_A RAS-like protein 12; GD 93.2 0.04 1.4E-06 46.3 2.6 24 45-68 21-44 (187)
361 4b3f_X DNA-binding protein smu 93.2 0.069 2.4E-06 54.5 4.8 63 24-97 192-254 (646)
362 1u8z_A RAS-related protein RAL 93.2 0.058 2E-06 43.8 3.5 23 46-68 5-27 (168)
363 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.04 1.4E-06 45.4 2.6 24 45-68 7-30 (177)
364 4gzl_A RAS-related C3 botulinu 93.2 0.052 1.8E-06 46.3 3.3 24 45-68 30-53 (204)
365 2fn4_A P23, RAS-related protei 93.2 0.057 2E-06 44.6 3.5 25 44-68 8-32 (181)
366 1nij_A Hypothetical protein YJ 93.2 0.042 1.4E-06 50.7 2.8 25 44-68 3-27 (318)
367 3iev_A GTP-binding protein ERA 93.2 0.05 1.7E-06 49.9 3.4 27 42-68 7-33 (308)
368 2orw_A Thymidine kinase; TMTK, 93.2 0.044 1.5E-06 46.1 2.8 23 46-68 4-26 (184)
369 1ky3_A GTP-binding protein YPT 93.1 0.053 1.8E-06 44.8 3.2 25 44-68 7-31 (182)
370 2www_A Methylmalonic aciduria 93.1 0.053 1.8E-06 50.8 3.5 24 44-67 73-96 (349)
371 3iqw_A Tail-anchored protein t 93.1 0.09 3.1E-06 48.8 5.0 44 44-89 15-58 (334)
372 2bbs_A Cystic fibrosis transme 93.1 0.047 1.6E-06 49.6 3.0 24 45-68 64-87 (290)
373 3cbq_A GTP-binding protein REM 93.1 0.035 1.2E-06 47.1 2.0 24 44-67 22-45 (195)
374 1m2o_B GTP-binding protein SAR 93.1 0.044 1.5E-06 46.1 2.7 23 46-68 24-46 (190)
375 3kjh_A CO dehydrogenase/acetyl 93.1 0.099 3.4E-06 45.9 5.1 41 48-90 3-43 (254)
376 4bas_A ADP-ribosylation factor 93.1 0.055 1.9E-06 45.6 3.3 27 43-69 15-41 (199)
377 4dkx_A RAS-related protein RAB 93.1 0.042 1.5E-06 47.6 2.6 21 48-68 16-36 (216)
378 1pui_A ENGB, probable GTP-bind 93.0 0.033 1.1E-06 47.6 1.8 25 44-68 25-49 (210)
379 1r2q_A RAS-related protein RAB 93.0 0.045 1.5E-06 44.6 2.6 23 46-68 7-29 (170)
380 2y8e_A RAB-protein 6, GH09086P 93.0 0.047 1.6E-06 45.0 2.7 23 46-68 15-37 (179)
381 3vr4_A V-type sodium ATPase ca 93.0 0.23 8E-06 48.9 7.8 49 30-87 222-270 (600)
382 3fvq_A Fe(3+) IONS import ATP- 93.0 0.05 1.7E-06 50.9 3.0 22 46-67 31-52 (359)
383 2bme_A RAB4A, RAS-related prot 93.0 0.047 1.6E-06 45.5 2.7 24 45-68 10-33 (186)
384 1z0f_A RAB14, member RAS oncog 92.9 0.047 1.6E-06 45.0 2.6 26 44-69 14-39 (179)
385 1fx0_A ATP synthase alpha chai 92.9 0.18 6.2E-06 49.0 6.9 81 46-132 164-264 (507)
386 3io3_A DEHA2D07832P; chaperone 92.9 0.09 3.1E-06 49.1 4.7 45 44-88 17-61 (348)
387 2qm8_A GTPase/ATPase; G protei 92.9 0.06 2E-06 50.1 3.5 24 44-67 54-77 (337)
388 2zts_A Putative uncharacterize 92.9 0.039 1.3E-06 48.6 2.1 49 44-95 29-77 (251)
389 1upt_A ARL1, ADP-ribosylation 92.9 0.063 2.2E-06 43.9 3.3 24 45-68 7-30 (171)
390 4dsu_A GTPase KRAS, isoform 2B 92.9 0.048 1.6E-06 45.5 2.6 24 46-69 5-28 (189)
391 2c61_A A-type ATP synthase non 92.8 0.075 2.6E-06 51.3 4.1 87 46-132 153-258 (469)
392 2g3y_A GTP-binding protein GEM 92.8 0.053 1.8E-06 46.7 2.8 23 45-67 37-59 (211)
393 2qu8_A Putative nucleolar GTP- 92.8 0.072 2.5E-06 46.3 3.7 25 44-68 28-52 (228)
394 3bc1_A RAS-related protein RAB 92.8 0.05 1.7E-06 45.5 2.6 24 45-68 11-34 (195)
395 1u0l_A Probable GTPase ENGC; p 92.8 0.072 2.5E-06 48.7 3.8 23 46-68 170-192 (301)
396 1mh1_A RAC1; GTP-binding, GTPa 92.8 0.051 1.7E-06 45.1 2.6 23 46-68 6-28 (186)
397 3t5g_A GTP-binding protein RHE 92.7 0.056 1.9E-06 44.8 2.8 25 44-68 5-29 (181)
398 1lw7_A Transcriptional regulat 92.7 0.062 2.1E-06 50.6 3.4 24 45-68 170-193 (365)
399 4tmk_A Protein (thymidylate ki 92.7 0.12 4.2E-06 44.5 5.0 25 46-70 4-28 (213)
400 3bwd_D RAC-like GTP-binding pr 92.7 0.052 1.8E-06 45.0 2.6 23 46-68 9-31 (182)
401 1tq4_A IIGP1, interferon-induc 92.7 0.052 1.8E-06 51.8 2.8 24 44-67 68-91 (413)
402 1zbd_A Rabphilin-3A; G protein 92.7 0.058 2E-06 45.7 2.9 24 45-68 8-31 (203)
403 2oil_A CATX-8, RAS-related pro 92.7 0.051 1.7E-06 45.7 2.5 24 45-68 25-48 (193)
404 1m8p_A Sulfate adenylyltransfe 92.7 0.1 3.6E-06 52.1 5.1 27 43-69 394-420 (573)
405 3d31_A Sulfate/molybdate ABC t 92.7 0.061 2.1E-06 50.2 3.2 23 46-68 27-49 (348)
406 3ld9_A DTMP kinase, thymidylat 92.7 0.066 2.3E-06 46.5 3.2 28 43-70 19-46 (223)
407 2axn_A 6-phosphofructo-2-kinas 92.7 0.058 2E-06 53.3 3.2 25 44-68 34-58 (520)
408 3llu_A RAS-related GTP-binding 92.7 0.059 2E-06 45.5 2.9 23 46-68 21-43 (196)
409 1gwn_A RHO-related GTP-binding 92.7 0.054 1.9E-06 46.3 2.7 24 45-68 28-51 (205)
410 1ega_A Protein (GTP-binding pr 92.7 0.057 1.9E-06 49.4 2.9 25 44-68 7-31 (301)
411 2ew1_A RAS-related protein RAB 92.7 0.055 1.9E-06 46.1 2.7 24 45-68 26-49 (201)
412 2efe_B Small GTP-binding prote 92.7 0.052 1.8E-06 44.9 2.5 24 45-68 12-35 (181)
413 2a9k_A RAS-related protein RAL 92.6 0.054 1.8E-06 45.0 2.6 24 45-68 18-41 (187)
414 2atv_A RERG, RAS-like estrogen 92.6 0.054 1.8E-06 45.7 2.6 24 45-68 28-51 (196)
415 2h17_A ADP-ribosylation factor 92.6 0.059 2E-06 44.8 2.8 23 46-68 22-44 (181)
416 1z47_A CYSA, putative ABC-tran 92.6 0.059 2E-06 50.4 2.9 23 46-68 42-64 (355)
417 1moz_A ARL1, ADP-ribosylation 92.6 0.059 2E-06 44.7 2.7 25 44-68 17-41 (183)
418 2g6b_A RAS-related protein RAB 92.6 0.056 1.9E-06 44.7 2.6 24 45-68 10-33 (180)
419 2o52_A RAS-related protein RAB 92.6 0.063 2.1E-06 45.6 2.9 24 45-68 25-48 (200)
420 1zj6_A ADP-ribosylation factor 92.6 0.09 3.1E-06 43.9 3.9 24 45-68 16-39 (187)
421 2fg5_A RAB-22B, RAS-related pr 92.6 0.057 2E-06 45.4 2.6 24 45-68 23-46 (192)
422 2afh_E Nitrogenase iron protei 92.5 0.11 3.8E-06 47.0 4.7 39 46-86 3-41 (289)
423 2ewv_A Twitching motility prot 92.5 0.07 2.4E-06 50.4 3.4 110 44-164 135-245 (372)
424 1ksh_A ARF-like protein 2; sma 92.5 0.079 2.7E-06 44.1 3.5 26 44-69 17-42 (186)
425 3clv_A RAB5 protein, putative; 92.5 0.056 1.9E-06 45.6 2.6 24 45-68 7-30 (208)
426 2h92_A Cytidylate kinase; ross 92.5 0.045 1.5E-06 47.3 1.9 22 46-67 4-25 (219)
427 1oxx_K GLCV, glucose, ABC tran 92.5 0.058 2E-06 50.5 2.8 22 46-67 32-53 (353)
428 3cmw_A Protein RECA, recombina 92.5 0.1 3.4E-06 58.4 5.1 83 43-132 1429-1518(1706)
429 2gf9_A RAS-related protein RAB 92.5 0.058 2E-06 45.2 2.6 24 45-68 22-45 (189)
430 3rlf_A Maltose/maltodextrin im 92.5 0.062 2.1E-06 50.7 2.9 23 46-68 30-52 (381)
431 2b6h_A ADP-ribosylation factor 92.5 0.087 3E-06 44.4 3.6 24 45-68 29-52 (192)
432 3t1o_A Gliding protein MGLA; G 92.5 0.056 1.9E-06 45.4 2.4 23 45-67 14-36 (198)
433 3kkq_A RAS-related protein M-R 92.5 0.092 3.2E-06 43.5 3.8 25 44-68 17-41 (183)
434 3tui_C Methionine import ATP-b 92.5 0.065 2.2E-06 50.2 3.0 56 113-168 171-229 (366)
435 3oes_A GTPase rhebl1; small GT 92.4 0.058 2E-06 45.8 2.5 26 44-69 23-48 (201)
436 4dhe_A Probable GTP-binding pr 92.4 0.071 2.4E-06 46.0 3.1 26 44-69 28-53 (223)
437 2q3h_A RAS homolog gene family 92.4 0.064 2.2E-06 45.4 2.8 24 45-68 20-43 (201)
438 3reg_A RHO-like small GTPase; 92.4 0.059 2E-06 45.4 2.6 25 45-69 23-47 (194)
439 3dz8_A RAS-related protein RAB 92.4 0.065 2.2E-06 45.0 2.8 23 46-68 24-46 (191)
440 1c9k_A COBU, adenosylcobinamid 92.4 0.065 2.2E-06 44.8 2.7 34 48-87 2-35 (180)
441 2fh5_B SR-beta, signal recogni 92.4 0.06 2E-06 46.1 2.6 24 45-68 7-30 (214)
442 2j1l_A RHO-related GTP-binding 92.4 0.066 2.3E-06 46.0 2.9 25 44-68 33-57 (214)
443 3tkl_A RAS-related protein RAB 92.4 0.077 2.7E-06 44.5 3.3 26 44-69 15-40 (196)
444 2yyz_A Sugar ABC transporter, 92.4 0.067 2.3E-06 50.1 3.0 23 46-68 30-52 (359)
445 2bov_A RAla, RAS-related prote 92.4 0.084 2.9E-06 44.7 3.5 25 44-68 13-37 (206)
446 1g8f_A Sulfate adenylyltransfe 92.4 0.078 2.7E-06 52.0 3.6 47 20-70 374-420 (511)
447 2il1_A RAB12; G-protein, GDP, 92.4 0.06 2.1E-06 45.3 2.5 23 46-68 27-49 (192)
448 2rcn_A Probable GTPase ENGC; Y 92.4 0.096 3.3E-06 48.9 4.1 23 46-68 216-238 (358)
449 1h65_A Chloroplast outer envel 92.4 0.14 4.8E-06 45.8 5.1 26 44-69 38-63 (270)
450 2it1_A 362AA long hypothetical 92.3 0.068 2.3E-06 50.1 3.0 23 46-68 30-52 (362)
451 2p67_A LAO/AO transport system 92.3 0.079 2.7E-06 49.4 3.5 25 43-67 54-78 (341)
452 2a5j_A RAS-related protein RAB 92.3 0.061 2.1E-06 45.2 2.5 23 46-68 22-44 (191)
453 2j9r_A Thymidine kinase; TK1, 92.3 0.041 1.4E-06 47.3 1.4 109 44-163 27-138 (214)
454 1jwy_B Dynamin A GTPase domain 92.3 0.14 4.8E-06 46.8 5.2 26 43-68 22-47 (315)
455 2qnr_A Septin-2, protein NEDD5 92.3 0.061 2.1E-06 49.2 2.6 21 47-67 20-40 (301)
456 1g29_1 MALK, maltose transport 92.2 0.068 2.3E-06 50.3 2.9 23 46-68 30-52 (372)
457 3lxx_A GTPase IMAP family memb 92.2 0.089 3E-06 46.1 3.6 26 44-69 28-53 (239)
458 3cr8_A Sulfate adenylyltranfer 92.2 0.076 2.6E-06 52.8 3.4 25 44-68 368-392 (552)
459 2bcg_Y Protein YP2, GTP-bindin 92.2 0.067 2.3E-06 45.5 2.6 24 45-68 8-31 (206)
460 2p5s_A RAS and EF-hand domain 92.2 0.065 2.2E-06 45.4 2.5 25 44-68 27-51 (199)
461 1x3s_A RAS-related protein RAB 92.2 0.067 2.3E-06 44.9 2.6 23 46-68 16-38 (195)
462 1vg8_A RAS-related protein RAB 92.2 0.083 2.8E-06 44.8 3.2 25 44-68 7-31 (207)
463 1v43_A Sugar-binding transport 92.2 0.074 2.5E-06 50.1 3.0 22 46-67 38-59 (372)
464 3zq6_A Putative arsenical pump 92.2 0.18 6.2E-06 46.5 5.7 44 45-90 14-57 (324)
465 3k53_A Ferrous iron transport 92.1 0.091 3.1E-06 47.1 3.5 24 45-68 3-26 (271)
466 3def_A T7I23.11 protein; chlor 92.1 0.15 5.1E-06 45.4 4.9 26 44-69 35-60 (262)
467 3o47_A ADP-ribosylation factor 92.1 0.7 2.4E-05 42.6 9.7 22 47-68 167-188 (329)
468 2gf0_A GTP-binding protein DI- 92.1 0.096 3.3E-06 44.1 3.5 24 45-68 8-31 (199)
469 3hjn_A DTMP kinase, thymidylat 92.1 0.16 5.4E-06 43.2 4.8 24 47-70 2-25 (197)
470 3v9p_A DTMP kinase, thymidylat 92.1 0.12 4E-06 45.1 4.0 26 44-69 24-49 (227)
471 2h57_A ADP-ribosylation factor 92.0 0.061 2.1E-06 45.1 2.1 24 46-69 22-45 (190)
472 2atx_A Small GTP binding prote 92.0 0.074 2.5E-06 44.7 2.7 23 46-68 19-41 (194)
473 2fu5_C RAS-related protein RAB 92.0 0.047 1.6E-06 45.4 1.4 24 45-68 8-31 (183)
474 3ug7_A Arsenical pump-driving 92.0 0.16 5.3E-06 47.5 5.1 40 44-85 25-64 (349)
475 2fv8_A H6, RHO-related GTP-bin 92.0 0.074 2.5E-06 45.4 2.7 23 46-68 26-48 (207)
476 3thx_A DNA mismatch repair pro 92.0 0.22 7.5E-06 52.7 6.7 22 44-65 661-682 (934)
477 2hup_A RAS-related protein RAB 92.0 0.074 2.5E-06 45.2 2.7 24 45-68 29-52 (201)
478 2ck3_A ATP synthase subunit al 92.0 0.35 1.2E-05 47.0 7.5 87 46-132 163-271 (510)
479 1z06_A RAS-related protein RAB 91.9 0.093 3.2E-06 43.9 3.2 25 44-68 19-43 (189)
480 2j0v_A RAC-like GTP-binding pr 91.9 0.075 2.6E-06 45.4 2.7 24 45-68 9-32 (212)
481 1x6v_B Bifunctional 3'-phospho 91.9 0.09 3.1E-06 52.9 3.5 25 44-68 51-75 (630)
482 1bif_A 6-phosphofructo-2-kinas 91.9 0.079 2.7E-06 51.7 3.1 25 44-68 38-62 (469)
483 3fdi_A Uncharacterized protein 91.9 0.08 2.7E-06 45.2 2.8 23 46-68 7-29 (201)
484 1f2t_A RAD50 ABC-ATPase; DNA d 91.9 0.11 3.7E-06 42.0 3.3 23 45-67 23-45 (149)
485 2gco_A H9, RHO-related GTP-bin 91.9 0.079 2.7E-06 44.9 2.7 23 46-68 26-48 (201)
486 3fkq_A NTRC-like two-domain pr 91.8 0.13 4.6E-06 48.4 4.5 43 42-86 140-183 (373)
487 2gza_A Type IV secretion syste 91.8 0.07 2.4E-06 50.1 2.5 23 46-68 176-198 (361)
488 3gd7_A Fusion complex of cysti 91.8 0.085 2.9E-06 50.0 3.0 23 45-67 47-69 (390)
489 3b1v_A Ferrous iron uptake tra 91.8 0.11 3.9E-06 46.6 3.8 23 46-68 4-26 (272)
490 2f7s_A C25KG, RAS-related prot 91.7 0.089 3E-06 45.1 2.9 24 45-68 25-48 (217)
491 3q3j_B RHO-related GTP-binding 91.7 0.079 2.7E-06 45.6 2.6 23 46-68 28-50 (214)
492 3cph_A RAS-related protein SEC 91.7 0.079 2.7E-06 45.2 2.5 24 45-68 20-43 (213)
493 1p9r_A General secretion pathw 91.7 0.17 5.8E-06 48.5 5.0 24 45-68 167-190 (418)
494 4dzz_A Plasmid partitioning pr 91.7 0.13 4.3E-06 43.7 3.8 42 46-89 2-44 (206)
495 2gk6_A Regulator of nonsense t 91.7 0.14 4.9E-06 51.9 4.7 50 46-97 196-245 (624)
496 1wf3_A GTP-binding protein; GT 91.7 0.11 3.7E-06 47.5 3.5 25 44-68 6-30 (301)
497 3gmt_A Adenylate kinase; ssgci 91.6 0.08 2.7E-06 46.1 2.4 24 45-68 8-31 (230)
498 2xtp_A GTPase IMAP family memb 91.6 0.11 3.9E-06 46.0 3.5 25 44-68 21-45 (260)
499 4hlc_A DTMP kinase, thymidylat 91.6 0.14 4.8E-06 43.8 3.9 24 46-69 3-26 (205)
500 1t9h_A YLOQ, probable GTPase E 91.5 0.064 2.2E-06 49.1 1.8 23 46-68 174-196 (307)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-52 Score=424.53 Aligned_cols=342 Identities=17% Similarity=0.162 Sum_probs=256.0
Q ss_pred ccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc--CcccccCCCeEEEEEeCCCC--CHHHHHHHH
Q 042290 21 YGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN--DVRVKKYFSFRAWAYVSEDF--DAVGITKVI 96 (425)
Q Consensus 21 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 96 (425)
|||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++|+++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999996542 24679999999999999999999997 56788999999999999875 788999999
Q ss_pred HHHhcCCC--------CCCCHHHHHHHHHHHcCCc-eEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhhh
Q 042290 97 LQADAGSV--------DVNDLNLLQLQLENQLKNK-KFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 97 l~~l~~~~--------~~~~~~~~~~~l~~~l~~k-~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~ 167 (425)
+.+++... ...+.+.+...+++.|.++ ++||||||+|+.+...|... +||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 99998321 1234566788999999996 99999999987532234321 7899999999999988
Q ss_pred ccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCChHHHHHHHhhc
Q 042290 168 MVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYDPKDWEDVLNSK 247 (425)
Q Consensus 168 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~ 247 (425)
.+......++|++|+.++|++||.++++... ..+..++++++|+++|+|+||||+++|+.|+.+ + .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 7753336799999999999999999987543 246677899999999999999999999999776 3 3444445443
Q ss_pred ccCCCCCchhHHHHHHHhcCCChHHHHHHHh-----------hhccCCCCceecHHHHHHHHHHc--CCcccCCCCCcHH
Q 042290 248 IWDLDEDKSGIMRALRVSYYYLPSHVKRCFA-----------HCSLLPKGYEFDERQIVLLWMAE--GLLQHKTDGMEME 314 (425)
Q Consensus 248 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~-----------~la~fp~~~~i~~~~li~~W~ae--g~i~~~~~~~~~e 314 (425)
.+... ...+..++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.....+.+.+
T Consensus 355 l~~~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESRG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhccc--HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 33221 234888999999999999999999 999999999999 8899999 9998654456778
Q ss_pred HHHHHHHHHHHhCCCcccccC-CcCeEEEchHHHHHHHHHhccccEEecc-----CCCCCCCCCCCCCeEEEEEEec
Q 042290 315 ELGRKSFQVLHSRSFFQRSKI-DASRFLMHDLIHDLACWASGEICFSMES-----NWDGNNQGIFSRNLRHFSYLSS 385 (425)
Q Consensus 315 ~~~~~~l~~L~~~sll~~~~~-~~~~~~mH~lv~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~r~lsi~~~ 385 (425)
++++ +|++|+++||+++... ...+|+|||+||+||++++.+++..... .+........+...||++.+..
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~r~~~~~~~ 504 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEIGNNNVSVPERHIPSHFQ 504 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHHHHHHTTSTTTSSCC-----------------
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhhh
Confidence 8888 9999999999998753 3468999999999999999887652100 0000111224566788887654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.7e-41 Score=372.02 Aligned_cols=314 Identities=22% Similarity=0.260 Sum_probs=247.4
Q ss_pred CCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccc-ccCC-CeEEEEEeCCCCC--
Q 042290 13 SSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV-KKYF-SFRAWAYVSEDFD-- 88 (425)
Q Consensus 13 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~-- 88 (425)
.+..+..||||++++++|.++|.... ...++|+|+||||+||||||++++++.+. ..+| +.++|+++++..+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 34455779999999999999997653 36789999999999999999999997543 3444 6788999988544
Q ss_pred HHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHcCCc--eEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecC
Q 042290 89 AVGITKVILQADAGS-----VDVNDLNLLQLQLENQLKNK--KFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTR 161 (425)
Q Consensus 89 ~~~~~~~il~~l~~~-----~~~~~~~~~~~~l~~~l~~k--~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR 161 (425)
....+..++..+... ....+.+.+.+.++..+.++ |+||||||+|+. ..|..+ .+|++||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEES
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcC
Confidence 334466666666521 23456788889999999877 999999999753 455443 57899999999
Q ss_pred ChhhhhccCCCCceeecCC-CChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCChHHH
Q 042290 162 NEGVSSMVTTPGAAHSLGN-LLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYDPKDW 240 (425)
Q Consensus 162 ~~~v~~~~~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w 240 (425)
+..++..+......+.+.+ |+.++|++||...+... .+..++.+++|+++|+|+||||+++|++|+.+. ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9988855433337889996 99999999999887432 233446789999999999999999999998863 356
Q ss_pred HHHHhhcccCC----C----CCchhHHHHHHHhcCCChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCcccCCCCCc
Q 042290 241 EDVLNSKIWDL----D----EDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHKTDGME 312 (425)
Q Consensus 241 ~~~l~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~ 312 (425)
...++...... . .....+..+|.+||+.||+++|.||++||+||+++.|+.+.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------
Confidence 66555432221 1 1125689999999999999999999999999999999999999999543
Q ss_pred HHHHHHHHHHHHHhCCCcccccCC-cCeEEEchHHHHHHHHHhcccc
Q 042290 313 MEELGRKSFQVLHSRSFFQRSKID-ASRFLMHDLIHDLACWASGEIC 358 (425)
Q Consensus 313 ~e~~~~~~l~~L~~~sll~~~~~~-~~~~~mH~lv~~~a~~~~~~~~ 358 (425)
++.++++|++|+++||++....+ ..+|+||++||+|+++++.++.
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred -HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 36688999999999999976532 3469999999999999987763
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.7e-41 Score=350.01 Aligned_cols=284 Identities=16% Similarity=0.202 Sum_probs=225.7
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCe-EEEEEeCCCCCHHHHHHHHH
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSF-RAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il 97 (425)
..|||+.++++|.++|.... ..++|+|+||||+||||||++++++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34999999999999997532 3689999999999999999999987677888986 99999999998888888887
Q ss_pred HHhc--C-C-C-CC-------CCHHHHHHHHHHHc---CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC
Q 042290 98 QADA--G-S-V-DV-------NDLNLLQLQLENQL---KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN 162 (425)
Q Consensus 98 ~~l~--~-~-~-~~-------~~~~~~~~~l~~~l---~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~ 162 (425)
..+. . . . .. .+.+.+.+.+++.+ .++++||||||+|+ .+.|..+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccC
Confidence 7654 1 1 0 11 12344556666655 78999999999987 4566654 1 68999999999
Q ss_pred hhhhhccCCCCceeecC------CCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCC-
Q 042290 163 EGVSSMVTTPGAAHSLG------NLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKY- 235 (425)
Q Consensus 163 ~~v~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~- 235 (425)
..++..+... ..+.++ +|+.+||++||.+.. ... ..+...+| |+|+||||+++|+.|+.+.
T Consensus 275 ~~Va~~l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 275 KQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp SHHHHHHHHH-SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred hHHHHhcCCC-eEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCC
Confidence 9887544322 345566 899999999999984 221 11333334 9999999999999999873
Q ss_pred ChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHH-HHHHhhhccCCCCceecHHHHHHHHHHcCCcccCCCCCcHH
Q 042290 236 DPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHV-KRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHKTDGMEME 314 (425)
Q Consensus 236 ~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e 314 (425)
+..+|... ....+..+|.+||+.||++. |+||++||+||+++.|+.+.++.+|+++| +
T Consensus 343 s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------e 401 (1221)
T 1vt4_I 343 TWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------K 401 (1221)
T ss_dssp SHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------S
T ss_pred CHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------H
Confidence 67788652 23569999999999999999 99999999999999999999999998876 1
Q ss_pred HHHHHHHHHHHhCCCcccccCCcCeEEEchHHHHHH
Q 042290 315 ELGRKSFQVLHSRSFFQRSKIDASRFLMHDLIHDLA 350 (425)
Q Consensus 315 ~~~~~~l~~L~~~sll~~~~~~~~~~~mH~lv~~~a 350 (425)
+.++.+|++|+++|||+... ...+|+||+++++++
T Consensus 402 edAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 35788999999999999853 457899999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=325.23 Aligned_cols=307 Identities=24% Similarity=0.314 Sum_probs=234.4
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccc-ccCC-CeEEEEEeCCCCCHHH
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV-KKYF-SFRAWAYVSEDFDAVG 91 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~ 91 (425)
+..+..||||+.++++|.++|.... +..++|+|+|+||+||||||.+++++... ..+| +.++|++++.. +...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~ 194 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSG 194 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHH
Confidence 3456779999999999999997542 35789999999999999999999997655 6778 58999999765 3333
Q ss_pred HHHHH---HHHhcC-----CCCCCCHHHHHHHHHHHcCC--ceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecC
Q 042290 92 ITKVI---LQADAG-----SVDVNDLNLLQLQLENQLKN--KKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTR 161 (425)
Q Consensus 92 ~~~~i---l~~l~~-----~~~~~~~~~~~~~l~~~l~~--k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR 161 (425)
++..+ +..++. .....+.+.+...+...+.+ +++||||||+|+. ..+.. + .++++||||||
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR 265 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTR 265 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEES
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECC
Confidence 44443 334431 22345667777888887765 7899999999753 33332 2 46899999999
Q ss_pred ChhhhhccCCCCceeec---CCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCChH
Q 042290 162 NEGVSSMVTTPGAAHSL---GNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYDPK 238 (425)
Q Consensus 162 ~~~v~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~ 238 (425)
+..++..+.. ..+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||+++|+.++.. ..
T Consensus 266 ~~~~~~~~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~ 336 (591)
T 1z6t_A 266 DKSVTDSVMG--PKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PN 336 (591)
T ss_dssp CGGGGTTCCS--CEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TT
T ss_pred CcHHHHhcCC--CceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--ch
Confidence 9987765443 23443 68999999999999875421 1223678899999999999999999999886 33
Q ss_pred HHHHHHhhcccCC--------CCCchhHHHHHHHhcCCChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCcccCCCC
Q 042290 239 DWEDVLNSKIWDL--------DEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHKTDG 310 (425)
Q Consensus 239 ~w~~~l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~ 310 (425)
.|...+....... ......+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++
T Consensus 337 ~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------- 407 (591)
T 1z6t_A 337 RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------- 407 (591)
T ss_dssp CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC---------
T ss_pred hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC---------
Confidence 6776665433221 11235789999999999999999999999999999999999999999432
Q ss_pred CcHHHHHHHHHHHHHhCCCcccccC-CcCeEEEchHHHHHHHHHhc
Q 042290 311 MEMEELGRKSFQVLHSRSFFQRSKI-DASRFLMHDLIHDLACWASG 355 (425)
Q Consensus 311 ~~~e~~~~~~l~~L~~~sll~~~~~-~~~~~~mH~lv~~~a~~~~~ 355 (425)
.+.+..++++|+++||++.... ...+|+||++||+++++...
T Consensus 408 ---~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 ---TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ---HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred ---HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 2457889999999999986542 23589999999999998843
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.83 E-value=1.8e-19 Score=171.81 Aligned_cols=294 Identities=12% Similarity=0.071 Sum_probs=180.9
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC------
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF------ 87 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------ 87 (425)
...+..|+||+++++.|.+++... +++.|+|++|+|||+|++++++.. . .+|+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHI 72 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCB
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCC
Confidence 345577999999999999998531 589999999999999999998742 1 6777765332
Q ss_pred CHHHHHHHHHHHhcC-----------------C--CCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCCCC-------hHHH
Q 042290 88 DAVGITKVILQADAG-----------------S--VDVNDLNLLQLQLENQLKN-KKFLLVLDDMWSEN-------YDVR 140 (425)
Q Consensus 88 ~~~~~~~~il~~l~~-----------------~--~~~~~~~~~~~~l~~~l~~-k~~LLVlDdv~~~~-------~~~~ 140 (425)
+...++..+...+.. . ....+...+.+.+...... ++++|||||+++.+ ...+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 455566666554431 0 0123455566666655542 38999999996532 1223
Q ss_pred hccccccCCCCCCcEEEEecCChhh-hhc---------c-CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHH
Q 042290 141 ANLCKPFKAGLPGSKIIVTTRNEGV-SSM---------V-TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEI 209 (425)
Q Consensus 141 ~~l~~~l~~~~~~~~ilvTtR~~~v-~~~---------~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 209 (425)
..+...... ..+.++|+|++.... ... . +.....+.+.+|+.+|+.+++......... ...++.
T Consensus 153 ~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~----~~~~~~ 227 (350)
T 2qen_A 153 ALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL----DVPENE 227 (350)
T ss_dssp HHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHH
T ss_pred HHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHH
Confidence 333222221 247889999887543 211 1 111247999999999999999875422111 112356
Q ss_pred HHHHHHhhCCChhHHHHhhhhhccCCChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCC---hHHHHHHHhhhccCCCC
Q 042290 210 GEKIVDRCNGSPLAAKTLGGLLRDKYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYL---PSHVKRCFAHCSLLPKG 286 (425)
Q Consensus 210 ~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~~~~~la~fp~~ 286 (425)
+..|++.|+|+|+++..++..+....+...+...+. +.+...+.-.+..+ ++..+.++..+|+ . .
T Consensus 228 ~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~ 295 (350)
T 2qen_A 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTL----------EVAKGLIMGELEELRRRSPRYVDILRAIAL-G-Y 295 (350)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHH----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHH----------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-C
Confidence 788999999999999999876533222222221111 00111222222233 6788999999998 2 2
Q ss_pred ceecHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHHhCCCcccccCCcCeEEE-chHHHHHHH
Q 042290 287 YEFDERQIVLLWMAEGLLQHKTDGMEMEELGRKSFQVLHSRSFFQRSKIDASRFLM-HDLIHDLAC 351 (425)
Q Consensus 287 ~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~m-H~lv~~~a~ 351 (425)
++...+....... . ++. .......+++.|++.+||.... ..|.+ |++++++.+
T Consensus 296 --~~~~~l~~~~~~~-~-----~~~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 --NRWSLIRDYLAVK-G-----TKI-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp --CSHHHHHHHHHHT-T-----CCC-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred --CCHHHHHHHHHHH-h-----CCC-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 3444444433221 0 011 1244678999999999998752 34554 889988764
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.82 E-value=1.7e-19 Score=175.96 Aligned_cols=316 Identities=13% Similarity=0.011 Sum_probs=189.2
Q ss_pred CCCCCccccchhhHHHHHHHh-hCCCCCCCCCcEEEEE--EecCCchHHHHHHHHhcCcccc---cCCC-eEEEEEeCCC
Q 042290 14 SVNEKEVYGREKDKEAIVGLL-LGDDLNSGRGFSVIPI--TGMGGLGKTTLAQLVFNDVRVK---KYFS-FRAWAYVSED 86 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~vv~I--~G~~GvGKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~ 86 (425)
...+..|+||++++++|.+++ .....+.....+.+.| +|++|+|||+||+.+++..... ..+. ..+|+++...
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 334578999999999999988 4321100013457777 9999999999999999853221 0122 3678887777
Q ss_pred CCHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHcC--CceEEEEEeCCCCC------ChHHHhccccccCCC---C--
Q 042290 87 FDAVGITKVILQADAGSV--DVNDLNLLQLQLENQLK--NKKFLLVLDDMWSE------NYDVRANLCKPFKAG---L-- 151 (425)
Q Consensus 87 ~~~~~~~~~il~~l~~~~--~~~~~~~~~~~l~~~l~--~k~~LLVlDdv~~~------~~~~~~~l~~~l~~~---~-- 151 (425)
.+...++..++..++... ...+...+...+...+. +++++|||||+|.. ..+.+..+...+... .
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 788899999999887322 23345566666666654 67999999999642 223444333333221 2
Q ss_pred CCcEEEEecCChhhhhc--------cCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhC-----
Q 042290 152 PGSKIIVTTRNEGVSSM--------VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCN----- 218 (425)
Q Consensus 152 ~~~~ilvTtR~~~v~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~----- 218 (425)
.+..+|+||+...+... .......+.+.+|+.+++.++|...+..... .....++.+..|++.|+
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTS
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccC
Confidence 34568888875543211 1111234999999999999999765421111 01112367888999999
Q ss_pred -CChhHHHHhhhhhcc-----C---CChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhccCC--CCc
Q 042290 219 -GSPLAAKTLGGLLRD-----K---YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLP--KGY 287 (425)
Q Consensus 219 -G~PLai~~~~~~L~~-----~---~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp--~~~ 287 (425)
|+|..+..+...... . .+...+...+..... ...+..++..||++.+.++..++.+. .+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 999766655433211 1 223344433332110 23345567889999999999888753 223
Q ss_pred eecHHHHHHHHH--H-c--CCcccCCCCCcHHHHHHHHHHHHHhCCCcccccC---CcCeEEEchHH
Q 042290 288 EFDERQIVLLWM--A-E--GLLQHKTDGMEMEELGRKSFQVLHSRSFFQRSKI---DASRFLMHDLI 346 (425)
Q Consensus 288 ~i~~~~li~~W~--a-e--g~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~---~~~~~~mH~lv 346 (425)
.++...+...+. + . |. ..........+++.|++.|||..... ...+|++|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNV------KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCC------CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CccHHHHHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 455555544432 1 1 21 11123446678999999999976542 22345555443
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.81 E-value=9.6e-19 Score=167.15 Aligned_cols=292 Identities=13% Similarity=0.071 Sum_probs=174.5
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-----CCHH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-----FDAV 90 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~ 90 (425)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++++++.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 45789999999999999 732 489999999999999999998843 21 2578887642 3444
Q ss_pred HHHHHHHHHhc-------------CC-------C----------CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh---
Q 042290 91 GITKVILQADA-------------GS-------V----------DVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY--- 137 (425)
Q Consensus 91 ~~~~~il~~l~-------------~~-------~----------~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~--- 137 (425)
.++..+...+. .. . .......+.+.+.+... ++++|||||+++.+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 44444443321 00 0 12345555555655433 489999999954221
Q ss_pred HHHhccccccCCCCCCcEEEEecCChhhhh-c---------cCCC-CceeecCCCChhhHHHHHHHhhcCCCCcCCCcch
Q 042290 138 DVRANLCKPFKAGLPGSKIIVTTRNEGVSS-M---------VTTP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYL 206 (425)
Q Consensus 138 ~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~-~---------~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 206 (425)
..+..++..+.....+.++|+|++...... . .... ...+.+.+|+.+++.+++......... . ..
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~-~~-- 230 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-D-FK-- 230 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-C-CC--
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-C-CC--
Confidence 111111222211124678999999764311 1 1111 257899999999999999875421111 1 11
Q ss_pred HHHHHHHHHhhCCChhHHHHhhhhhccCCChHHHHHHHhhcccCCCCCchhHHHHHH-Hhc--CCChHHHHHHHhhhccC
Q 042290 207 SEIGEKIVDRCNGSPLAAKTLGGLLRDKYDPKDWEDVLNSKIWDLDEDKSGIMRALR-VSY--YYLPSHVKRCFAHCSLL 283 (425)
Q Consensus 207 ~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~~~~~la~f 283 (425)
+ ...|++.|+|+|+++..++..+....+...|...+-.. ....+...+. +.+ ..|++..+.++..+|+
T Consensus 231 -~-~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 231 -D-YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY------AKKLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp -C-HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH------HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred -c-HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH------HHHHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 1 17899999999999999988765433333332211100 0000111222 111 1688999999999998
Q ss_pred CCCceecHHHHHHHHH-HcCCcccCCCCCcHHHHHHHHHHHHHhCCCcccccCCcCeEE-EchHHHHHH
Q 042290 284 PKGYEFDERQIVLLWM-AEGLLQHKTDGMEMEELGRKSFQVLHSRSFFQRSKIDASRFL-MHDLIHDLA 350 (425)
Q Consensus 284 p~~~~i~~~~li~~W~-aeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~-mH~lv~~~a 350 (425)
+. +...+....- ..|. .........+++.|++.+||...+ ..|. .|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 22 4444432211 1121 011244678999999999998653 3455 589998874
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.68 E-value=2.8e-15 Score=144.63 Aligned_cols=297 Identities=13% Similarity=0.051 Sum_probs=183.2
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc----cCCCeEEEEEeCCCCCHHH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK----KYFSFRAWAYVSEDFDAVG 91 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~ 91 (425)
.+..|+||+.+++.|..++...-. ....+.+.|+|++|+|||+||+.+++..... +.-...+|+++....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 347899999999999999854311 1345689999999999999999998843211 0123467888888888889
Q ss_pred HHHHHHHHhcCC--CCCCCHHHHHHHHHHHc--CCceEEEEEeCCCCCCh-----HHHhccccccCCC--CCCcEEEEec
Q 042290 92 ITKVILQADAGS--VDVNDLNLLQLQLENQL--KNKKFLLVLDDMWSENY-----DVRANLCKPFKAG--LPGSKIIVTT 160 (425)
Q Consensus 92 ~~~~il~~l~~~--~~~~~~~~~~~~l~~~l--~~k~~LLVlDdv~~~~~-----~~~~~l~~~l~~~--~~~~~ilvTt 160 (425)
++..++..++.. ....+...+...+...+ .+++.+||||+++.... ..+..+....... ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 999999988732 22334566666666666 35689999999954221 1222222222211 3456788888
Q ss_pred CChhhhhc----cCCC-C-ceeecCCCChhhHHHHHHHhhcCC-CCcCCCcchHHHHHHHHHhhC---CChhHHHHhhh-
Q 042290 161 RNEGVSSM----VTTP-G-AAHSLGNLLRDGCLRIFVQHSLRR-TDFVAHQYLSEIGEKIVDRCN---GSPLAAKTLGG- 229 (425)
Q Consensus 161 R~~~v~~~----~~~~-~-~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~~~~I~~~~~---G~PLai~~~~~- 229 (425)
+....... .... . ..+.+++++.++..+++...+... ...... ++..+.+++.++ |+|..+..+..
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 76532111 1111 1 479999999999999998875321 011111 245677888888 99944333322
Q ss_pred hhc-------cCCChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhc-cCCCCceecHHHHHHHH---
Q 042290 230 LLR-------DKYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCS-LLPKGYEFDERQIVLLW--- 298 (425)
Q Consensus 230 ~L~-------~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la-~fp~~~~i~~~~li~~W--- 298 (425)
... ...+.+.+...+... ....+.-++..|+++.+..+..++ ++...-.+....+.+..
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 211 113455665555442 123456677889999888887776 44322345555444432
Q ss_pred -HHcCCcccCCCCCcHHHHHHHHHHHHHhCCCcccc
Q 042290 299 -MAEGLLQHKTDGMEMEELGRKSFQVLHSRSFFQRS 333 (425)
Q Consensus 299 -~aeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~ 333 (425)
-..|. .......+..+++.|...|+++..
T Consensus 322 ~~~~~~------~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLGL------EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTTC------CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCC------CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 12231 122345677899999999999874
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.68 E-value=3.7e-15 Score=143.99 Aligned_cols=299 Identities=14% Similarity=0.049 Sum_probs=189.1
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC-CCeEEEEEeCCCCCHHHHHH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY-FSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~ 94 (425)
.+..++||+.++++|.+++.....+..+..+.+.|+|++|+|||||++.+++.. ... -...+|+++....+...++.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHH
Confidence 347899999999999998865211011233489999999999999999998843 222 13467888777778888999
Q ss_pred HHHHHhcCCC--CCCCHHHHHHHHHHHcC--CceEEEEEeCCCCCChHHHhccccccCCCC----CCcEEEEecCChhhh
Q 042290 95 VILQADAGSV--DVNDLNLLQLQLENQLK--NKKFLLVLDDMWSENYDVRANLCKPFKAGL----PGSKIIVTTRNEGVS 166 (425)
Q Consensus 95 ~il~~l~~~~--~~~~~~~~~~~l~~~l~--~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~----~~~~ilvTtR~~~v~ 166 (425)
.++..++... ...+...+...+...+. +++.+||||+++..+......+...+.... .+..+|++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 9988887321 23345556666655553 568999999997766666666665554321 467788887765332
Q ss_pred hccCC------CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhh---------CCChhHHHHhhhhh
Q 042290 167 SMVTT------PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRC---------NGSPLAAKTLGGLL 231 (425)
Q Consensus 167 ~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~---------~G~PLai~~~~~~L 231 (425)
..+.. ....+.+.+++.++..+++...+..... ...-.++....|++.+ +|+|..+..+....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 22210 1137999999999999999887632110 0112246778899999 79886655544332
Q ss_pred cc--------CCChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhccCC---CCceecHHHHHHHHHH
Q 042290 232 RD--------KYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLP---KGYEFDERQIVLLWMA 300 (425)
Q Consensus 232 ~~--------~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp---~~~~i~~~~li~~W~a 300 (425)
.. ..+.+.....+.... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 11 123333333333321 11223345668888888888787654 2225666666554432
Q ss_pred ----cCCcccCCCCCcHHHHHHHHHHHHHhCCCccccc
Q 042290 301 ----EGLLQHKTDGMEMEELGRKSFQVLHSRSFFQRSK 334 (425)
Q Consensus 301 ----eg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 334 (425)
.|.. .........++++|..+|++....
T Consensus 321 ~~~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 321 VCEEYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 2211 112345678999999999998754
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=8.7e-16 Score=148.30 Aligned_cols=292 Identities=13% Similarity=-0.032 Sum_probs=181.9
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc----cC--CCeEEEEEeCCCC-CH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK----KY--FSFRAWAYVSEDF-DA 89 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~----~~--f~~~~wv~~~~~~-~~ 89 (425)
+..|+||++++++|.+++..... +...+.+.|+|++|+|||+||+.+++..... .. ....+|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 47899999999999988754211 1245689999999999999999999853211 01 3456788877666 78
Q ss_pred HHHHHHHHHHhc-C--CCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC----hHH-HhccccccCCCCCCcEEEEecC
Q 042290 90 VGITKVILQADA-G--SVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN----YDV-RANLCKPFKAGLPGSKIIVTTR 161 (425)
Q Consensus 90 ~~~~~~il~~l~-~--~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~----~~~-~~~l~~~l~~~~~~~~ilvTtR 161 (425)
..++..++..+. . .....+.......+...+..++.+|||||++... .+. +..+.... .+..+|+||+
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~ 172 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECS
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEEC
Confidence 888888888874 1 1223344566777777777766699999995321 112 22232222 6778999998
Q ss_pred Chhhhhc----c-CCCCceeecCCCChhhHHHHHHHhhcCC-CCcCCCcchHHHHHHHHHhhC---CChhH-HHHhhhhh
Q 042290 162 NEGVSSM----V-TTPGAAHSLGNLLRDGCLRIFVQHSLRR-TDFVAHQYLSEIGEKIVDRCN---GSPLA-AKTLGGLL 231 (425)
Q Consensus 162 ~~~v~~~----~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~~~~I~~~~~---G~PLa-i~~~~~~L 231 (425)
....... . ......+.+++++.++..+++...+... ..... .++..+.|++.++ |+|.. +..+-...
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 7532111 1 1112489999999999999999875311 11111 1256777888888 98873 33332222
Q ss_pred --c---cCCChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCccc
Q 042290 232 --R---DKYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQH 306 (425)
Q Consensus 232 --~---~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~ 306 (425)
. ...+.+.+...+... ....+..++..|+++.+..+..++....+-++. .......-..| .
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~-- 315 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q-- 315 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C--
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C--
Confidence 1 124566666666543 123466677889999888888887711101111 11112122223 1
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCccccc
Q 042290 307 KTDGMEMEELGRKSFQVLHSRSFFQRSK 334 (425)
Q Consensus 307 ~~~~~~~e~~~~~~l~~L~~~sll~~~~ 334 (425)
.........++++.|..+|+++...
T Consensus 316 ---~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 316 ---KPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp ---CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1123355678999999999998653
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=5.4e-15 Score=142.54 Aligned_cols=300 Identities=12% Similarity=0.046 Sum_probs=178.5
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC-CCeEEEEEeCCCCCHHHH
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY-FSFRAWAYVSEDFDAVGI 92 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~ 92 (425)
...+..|+||+.+++.|.+++..... +...+.+.|+|++|+||||||+.+++....... -...+|+++....+...+
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHH
Confidence 34457899999999999999864211 124568999999999999999999984321110 235678877666677777
Q ss_pred HHHHHHHhcCC--CCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCC----ChHHHhccccccCC-CCCCcEEEEecCCh
Q 042290 93 TKVILQADAGS--VDVNDLNLLQLQLENQLK--NKKFLLVLDDMWSE----NYDVRANLCKPFKA-GLPGSKIIVTTRNE 163 (425)
Q Consensus 93 ~~~il~~l~~~--~~~~~~~~~~~~l~~~l~--~k~~LLVlDdv~~~----~~~~~~~l~~~l~~-~~~~~~ilvTtR~~ 163 (425)
+..++..++.. ....+.......+...+. +++.+||||+++.. +...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88887777622 122345555555655553 45899999999431 12233333333321 23456778888765
Q ss_pred hhhhccC-----CC-CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhC---CChhHHHHhhhhhcc-
Q 042290 164 GVSSMVT-----TP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCN---GSPLAAKTLGGLLRD- 233 (425)
Q Consensus 164 ~v~~~~~-----~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~---G~PLai~~~~~~L~~- 233 (425)
.....+. .. ...+.+++++.++..+++...+..... ...-..+....+++.++ |+|..+..+......
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4322211 11 147999999999999999886531110 11122366777888888 999854443322210
Q ss_pred -------CCChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhccCCC-C-ceecHHHHHHHH--HH--
Q 042290 234 -------KYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPK-G-YEFDERQIVLLW--MA-- 300 (425)
Q Consensus 234 -------~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~-~-~~i~~~~li~~W--~a-- 300 (425)
..+.+.+...+... ....+.-.+..||+..+..+..++.+.+ + -.+....+.... ++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 13445555554432 1234566778899888888887774322 2 224443332222 11
Q ss_pred cCCcccCCCCCcHHHHHHHHHHHHHhCCCcccc
Q 042290 301 EGLLQHKTDGMEMEELGRKSFQVLHSRSFFQRS 333 (425)
Q Consensus 301 eg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~ 333 (425)
.|. . .........+++.|...|+++..
T Consensus 322 ~g~-~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LGV-E-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HTC-C-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCC-C-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 121 1 11234466789999999999764
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.51 E-value=1.3e-13 Score=123.85 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=121.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++||+.+++.|..++.... ..+.+.|+|++|+|||+||+.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 569999999999999996532 2358899999999999999999874322111100 00000000 00000
Q ss_pred HHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChh-hh
Q 042290 98 QADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEG-VS 166 (425)
Q Consensus 98 ~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~-v~ 166 (425)
.... ........+.....+... ..+++.+|||||++..+...+..+...+.....+..+|+||+... +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000 000001111122212111 135679999999977667777777777766566788888887642 22
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
..+......+.+.+++.++..+++...+..... .-.++....|++.|+|+|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 212122268999999999999999887643211 1123667889999999999988776544
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.45 E-value=1.2e-12 Score=115.83 Aligned_cols=189 Identities=12% Similarity=0.067 Sum_probs=120.0
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
-..++||+..++.|.+++.... .+.+.|+|++|+|||+||+.+++.......-...+.++.+.......+...+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHH
Confidence 3569999999999999996542 2348999999999999999998743211111223444444433333222221
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChh-hhhccCCCCce
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEG-VSSMVTTPGAA 175 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~-v~~~~~~~~~~ 175 (425)
........ ...+++.+|||||++.........+...+.....++.+|+||+... +...+......
T Consensus 90 ~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 90 KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 11111000 0125688999999977666666666666655556778888887642 22212222258
Q ss_pred eecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhh
Q 042290 176 HSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 176 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
+.+.+++.++..+++.+.+..... .-.++....|++.++|+|..+..+..
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999887642111 11236678899999999996554443
No 14
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.34 E-value=2e-12 Score=121.70 Aligned_cols=269 Identities=17% Similarity=0.140 Sum_probs=144.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..|+|++..++.+..++..... .......+.|+|++|+|||+||+.+++.. .. ...+++.........
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChHH------
Confidence 5799999999998888753110 01123568899999999999999998843 21 233444333222221
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC------------------CCCcEEEEe
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG------------------LPGSKIIVT 159 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~------------------~~~~~ilvT 159 (425)
+...+...+ .++.+|+||+++.........+...+... ..+..+|.|
T Consensus 80 --------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 80 --------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp --------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred --------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 111111111 24568999999776555555444333221 023456666
Q ss_pred cCCh-hhhhccCCC-CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccC---
Q 042290 160 TRNE-GVSSMVTTP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDK--- 234 (425)
Q Consensus 160 tR~~-~v~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~--- 234 (425)
|... .+...+... ...+.+.+++.++...++...+..... .-.++....|++.++|+|..+..+...+...
T Consensus 145 t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 220 (324)
T 1hqc_A 145 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQV 220 (324)
T ss_dssp ESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTT
T ss_pred CCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6543 222212222 257899999999999999887643221 1223677889999999999887765544221
Q ss_pred -----CChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhc-cCCCC----------ceecHHHHHH--
Q 042290 235 -----YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCS-LLPKG----------YEFDERQIVL-- 296 (425)
Q Consensus 235 -----~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la-~fp~~----------~~i~~~~li~-- 296 (425)
.+.+.....+... ......|+...+..+..+. .+..+ ..+++..+.+
T Consensus 221 ~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 221 AGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp TSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 2333333333321 1122334444444443332 22211 0122222222
Q ss_pred --HHHHcCCcccCCCCCcHHHHHHHHHH-HHHhCCCccc
Q 042290 297 --LWMAEGLLQHKTDGMEMEELGRKSFQ-VLHSRSFFQR 332 (425)
Q Consensus 297 --~W~aeg~i~~~~~~~~~e~~~~~~l~-~L~~~sll~~ 332 (425)
+-+..|++.....+....+.|.+||+ ++.+|+|||+
T Consensus 286 ~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 286 EPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 23456777654445556677777776 7777777764
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=4.2e-12 Score=119.21 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=119.4
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
-.+++||+..++.|.+++.... .+.+.|+|++|+|||++|+.+++...........++++.+.......+ ..+
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~ 92 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQ 92 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHH
Confidence 3679999999999999996542 233899999999999999999885321111112334443332222211 122
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHc-CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhhhccCCCCc
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVSSMVTTPGA 174 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l-~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~~~~~~~~~ 174 (425)
+..+... ...+ .+++.++||||++......+..+...+.....++.+|+||... .+...+.....
T Consensus 93 ~~~~~~~-------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 93 IKHFAQK-------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHHB-------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhc-------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 2211100 0011 3558899999998776677777777776655677888887653 22222222236
Q ss_pred eeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHhhh
Q 042290 175 AHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTLGG 229 (425)
Q Consensus 175 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~~ 229 (425)
.+.+.+++.++..+++...+..... .-.++.+..|++.++|.|. ++..+..
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDV----KYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8999999999999999886532111 1123667889999999995 4555443
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=8.8e-11 Score=110.34 Aligned_cols=187 Identities=11% Similarity=0.076 Sum_probs=117.2
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
-.+++|++..++.|.+++... ..+.+.|+|++|+|||++|+.+++.......-...+.++.+...... .....
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 96 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN-VIREK 96 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH-TTHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH-HHHHH
Confidence 356999999999999998653 23348999999999999999998843211100112333322211010 00111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHH--c-CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChh-hhhccCCC
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQ--L-KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEG-VSSMVTTP 172 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~--l-~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~-v~~~~~~~ 172 (425)
+. ..... + .+++.++|+|+++.........+...+.....++++|+||.... +...+...
T Consensus 97 ~~----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 97 VK----------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HH----------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HH----------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 11 11111 1 25678999999977766677777776666556788888886542 21111111
Q ss_pred CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhh
Q 042290 173 GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGL 230 (425)
Q Consensus 173 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~ 230 (425)
...+.+.+++.++...++...+..... .-.++....|++.++|+|..+..+...
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 257899999999999999877643221 122367788999999999866554433
No 17
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.10 E-value=5.5e-10 Score=106.98 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=117.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++||+..++.|.+++.... ....+.|+|++|+|||++|+.+++.......... ..+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHh
Confidence 469999999999999986532 2347899999999999999999874321111100 000000 0011111
Q ss_pred HHh-------cC--CCCCCCHHHHHHHHHHH-cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhh
Q 042290 98 QAD-------AG--SVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVS 166 (425)
Q Consensus 98 ~~l-------~~--~~~~~~~~~~~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~ 166 (425)
... .. .....+...+.+.+... ..+++.++||||++..+....+.+...+.....+..+|++|... .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 00 01112222222221111 13567899999997777677777777776655667777776543 222
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
..+......+.+.+++.++...++.+.+..... .-..+.+..|++.++|+|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 222222368999999999999999876532111 11236678899999999998876653
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.08 E-value=1.4e-09 Score=101.74 Aligned_cols=183 Identities=12% Similarity=0.106 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCC-eEEEEEeCCCCCHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFS-FRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 96 (425)
.+++|++..++.|.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 56999999999999888543 223489999999999999999988431 11111 122333332111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHH--c-CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChh-hhhccCCC
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQ--L-KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEG-VSSMVTTP 172 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~--l-~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~-v~~~~~~~ 172 (425)
..........+... + .+++.++|+|+++.........+...+.....++.+|+||.... +...+...
T Consensus 82 ---------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 82 ---------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp ---------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred ---------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 11111111111111 1 25678999999977766777788877776666778888776532 22222222
Q ss_pred CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 173 GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 173 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
...+.+.+++.++...++...+..... .-.++....|++.++|++..+....
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCC----CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 368999999999999999877643221 1223667889999999998655443
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.01 E-value=4.2e-09 Score=97.52 Aligned_cols=176 Identities=11% Similarity=0.010 Sum_probs=106.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---CC--CeEEEEEeCCCCCHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK---YF--SFRAWAYVSEDFDAVGI 92 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f--~~~~wv~~~~~~~~~~~ 92 (425)
..+.||++|+++|...|...-. ++..+.+.|+|++|+|||++++.+++...... .. -..+.+++....+...+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred cccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 3489999999999887755321 24567899999999999999999998653211 11 13567787777888899
Q ss_pred HHHHHHHhcCC--CCCCCHHHHHHHHHHH--cCCceEEEEEeCCCCCC-hHHHhccccccCCCCCCcEEEEecCChhhh-
Q 042290 93 TKVILQADAGS--VDVNDLNLLQLQLENQ--LKNKKFLLVLDDMWSEN-YDVRANLCKPFKAGLPGSKIIVTTRNEGVS- 166 (425)
Q Consensus 93 ~~~il~~l~~~--~~~~~~~~~~~~l~~~--l~~k~~LLVlDdv~~~~-~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~- 166 (425)
+..|++++... ......+.+...+... -.+++++++||+++... .+..-.+............+|.++...+..
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 99999998632 1222334444444332 24678999999996532 111111211111111223344444332111
Q ss_pred hcc----C-CC-CceeecCCCChhhHHHHHHHhhc
Q 042290 167 SMV----T-TP-GAAHSLGNLLRDGCLRIFVQHSL 195 (425)
Q Consensus 167 ~~~----~-~~-~~~~~l~~L~~~ea~~Lf~~~~~ 195 (425)
..+ . .. ...+.+.+++.++-.+++.+++.
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 111 1 11 14699999999999999998863
No 20
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.98 E-value=1.1e-08 Score=96.59 Aligned_cols=258 Identities=17% Similarity=0.140 Sum_probs=142.9
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
-.+++|++..++.+..++..... .......|.|+|++|+|||+||+.+++. .... .+.++.......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKS------- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSH-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccch-------
Confidence 35699999999999888864311 0123456899999999999999999873 2222 233333222111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC------------------CCcEEEE
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL------------------PGSKIIV 158 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~------------------~~~~ilv 158 (425)
......+.. ..+..+|+||+++.........+...+.... ++..+|.
T Consensus 95 -------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 95 -------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp -------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred -------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111111211 2345799999997666555555554433221 1245665
Q ss_pred ecCCh-hhhhccCCC-CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhcc---
Q 042290 159 TTRNE-GVSSMVTTP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRD--- 233 (425)
Q Consensus 159 TtR~~-~v~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~--- 233 (425)
+|... .+...+... ...+.+.+++.++...++.+.+.... ..-.++....|++.+.|+|-.+..+...+..
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFAD 235 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 55542 221111111 25799999999999999987764321 1122467788999999999666555433210
Q ss_pred ---C--CChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCcccCC
Q 042290 234 ---K--YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHKT 308 (425)
Q Consensus 234 ---~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~~ 308 (425)
. .+.+.....+. .+..+...++...+..+..++-. .+..+....+... .|.-
T Consensus 236 ~~~~~~i~~~~~~~~~~---------------~~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~---lg~~---- 292 (338)
T 3pfi_A 236 VNDEEIITEKRANEALN---------------SLGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAA---LSED---- 292 (338)
T ss_dssp HTTCSEECHHHHHHHHH---------------HHTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHH---TTCC----
T ss_pred hhcCCccCHHHHHHHHH---------------HhCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHH---hCCC----
Confidence 0 12222222222 12223334554445555555544 4444554444332 1221
Q ss_pred CCCcHHHHHHHHHH-HHHhCCCccccc
Q 042290 309 DGMEMEELGRKSFQ-VLHSRSFFQRSK 334 (425)
Q Consensus 309 ~~~~~e~~~~~~l~-~L~~~sll~~~~ 334 (425)
.....++++ .|++.+++....
T Consensus 293 -----~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 293 -----ENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp -----HHHHHHTTHHHHHHTTSEEEET
T ss_pred -----HHHHHHHHhHHHHHcCceecCC
Confidence 133444555 788999997764
No 21
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=1.3e-08 Score=96.64 Aligned_cols=196 Identities=14% Similarity=0.077 Sum_probs=115.8
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCC-CeEEEEEeCCCCCHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYF-SFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 95 (425)
-.+++|+++.++.|..++.... .+.+.|+|++|+|||++|+.+++.......+ .....++.+.......+ ..
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-RE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HH
Confidence 3669999999999999986532 2238999999999999999998853211111 12333443333233222 22
Q ss_pred HHHHhc-CCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhhhccCCCC
Q 042290 96 ILQADA-GSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVSSMVTTPG 173 (425)
Q Consensus 96 il~~l~-~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~~~~~~~~ 173 (425)
.+..+. ......... .....-.++.-+|++|+++.........+...+.......++|++|... .+...+....
T Consensus 109 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHHhhhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222221 110000000 0011112456799999997666656666666665555566777776543 2222111112
Q ss_pred ceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 174 AAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 174 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
..+.+.+++.++....+...+..... .-.++..+.|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV----KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999999887643211 112367888999999999865443
No 22
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.87 E-value=4.1e-08 Score=93.73 Aligned_cols=202 Identities=12% Similarity=0.043 Sum_probs=112.0
Q ss_pred CCccccchhhHHH---HHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEe----CCCCCH
Q 042290 17 EKEVYGREKDKEA---IVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYV----SEDFDA 89 (425)
Q Consensus 17 ~~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~----~~~~~~ 89 (425)
-..|+|++..++. +.+.+.... ...+.+.|+|++|+|||+||+.+++... .... .+.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~-~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG--PDTP-FTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC--SSCC-EEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc--ccCC-cccccchhhhhcccch
Confidence 3569999998766 455554432 2336899999999999999999998532 2111 122221 122233
Q ss_pred HHHHHHHHHHhc-C------------------------------CCCCCCHHHHHHHHHHHc-----CCc----eEEEEE
Q 042290 90 VGITKVILQADA-G------------------------------SVDVNDLNLLQLQLENQL-----KNK----KFLLVL 129 (425)
Q Consensus 90 ~~~~~~il~~l~-~------------------------------~~~~~~~~~~~~~l~~~l-----~~k----~~LLVl 129 (425)
...+........ . .........+...+.... .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 334333333211 0 000001222222222211 122 459999
Q ss_pred eCCCCCChHHHhccccccCCCCCCcEEEEecCC------------hhhhhccCCCCceeecCCCChhhHHHHHHHhhcCC
Q 042290 130 DDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN------------EGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRR 197 (425)
Q Consensus 130 Ddv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~------------~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 197 (425)
|+++.........+...+.......-++.|++. ..+...+......+.+.+++.++..+++...+...
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hhccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 999777666777777666554444333334321 11111111122468999999999999998776432
Q ss_pred CCcCCCcchHHHHHHHHHhhC-CChhHHHHhhh
Q 042290 198 TDFVAHQYLSEIGEKIVDRCN-GSPLAAKTLGG 229 (425)
Q Consensus 198 ~~~~~~~~~~~~~~~I~~~~~-G~PLai~~~~~ 229 (425)
.. .-.++....|++.+. |.|..+..+..
T Consensus 276 ~~----~~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 276 DV----EMSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp TC----CBCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 11 122367788999998 88876655543
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.84 E-value=1.8e-09 Score=92.71 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=39.6
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
-..++||+++++++.+++... ..+.+.|+|++|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 356999999999999998653 33568899999999999999998853
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.83 E-value=3.5e-08 Score=96.37 Aligned_cols=200 Identities=16% Similarity=0.166 Sum_probs=116.2
Q ss_pred CccccchhhH---HHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-CCHHHHH
Q 042290 18 KEVYGREKDK---EAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-FDAVGIT 93 (425)
Q Consensus 18 ~~~vGR~~e~---~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~ 93 (425)
.+++|.+..+ ..|...+... ..+.+.|+|++|+||||||+.+++.. ... ++.++.. .....+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~--~~~-----f~~l~a~~~~~~~i- 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYA--NAD-----VERISAVTSGVKEI- 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHT--TCE-----EEEEETTTCCHHHH-
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHh--CCC-----eEEEEeccCCHHHH-
Confidence 5689999888 7777777543 34679999999999999999999842 222 2222221 122221
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEE-EecCChh--hhhccC
Q 042290 94 KVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKII-VTTRNEG--VSSMVT 170 (425)
Q Consensus 94 ~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~il-vTtR~~~--v~~~~~ 170 (425)
..++... ......+++.+|+||+++.......+.++..+..+ ...+| .||.+.. +...+.
T Consensus 92 r~~~~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 92 REAIERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHHHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH
T ss_pred HHHHHHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh
Confidence 1111111 01112467889999999876666666676666542 23444 3555532 222222
Q ss_pred CCCceeecCCCChhhHHHHHHHhhcCCCCc---CCCcchHHHHHHHHHhhCCChhHHHHhhhhhc---c-------CCCh
Q 042290 171 TPGAAHSLGNLLRDGCLRIFVQHSLRRTDF---VAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLR---D-------KYDP 237 (425)
Q Consensus 171 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~---~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~---~-------~~~~ 237 (425)
.....+.+.+++.++...++.+.+...... ....-.++..+.|++.++|.+..+..+...+. . ..+.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~ 234 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKP 234 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCH
Confidence 222688899999999999998876431110 11122346778899999999876655543321 1 1456
Q ss_pred HHHHHHHhhcc
Q 042290 238 KDWEDVLNSKI 248 (425)
Q Consensus 238 ~~w~~~l~~~~ 248 (425)
+....++....
T Consensus 235 e~v~~~l~~~~ 245 (447)
T 3pvs_A 235 ELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHhhhh
Confidence 66666666543
No 25
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=1.6e-08 Score=96.15 Aligned_cols=197 Identities=12% Similarity=0.056 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHh-hCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC----CCeEE-------------
Q 042290 18 KEVYGREKDKEAIVGLL-LGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY----FSFRA------------- 79 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~------------- 79 (425)
.+++|++..++.|.+++ .... ... +.|+|++|+||||+++.+++....... ++...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 56899999999998887 3321 223 899999999999999988773211000 00000
Q ss_pred -----EEEeCCCC-C--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC
Q 042290 80 -----WAYVSEDF-D--AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL 151 (425)
Q Consensus 80 -----wv~~~~~~-~--~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~ 151 (425)
++.+.... . .......++..+......... . .+.. +.+++-++|||++...+......+...+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 11111000 0 000122222222110000000 0 0000 23466799999998777666677776665544
Q ss_pred CCcEEEEecCCh-hhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcch-HHHHHHHHHhhCCChhHHHHhhh
Q 042290 152 PGSKIIVTTRNE-GVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYL-SEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 152 ~~~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~-~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
.++.+|++|... .+...+......+.+.+++.++....+...+....- . -. ++.+..|++.++|.+..+..+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-Q---LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-E---ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-C---CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567777777653 232223233368999999999999999877632211 1 11 26678899999999876655544
No 26
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=4.3e-08 Score=97.92 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=108.4
Q ss_pred CccccchhhHHHHHHHhhCCC---------C--CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 18 KEVYGREKDKEAIVGLLLGDD---------L--NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~---------~--~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.+++|++..+++|.+++.... . .+.+..+.+.|+|++|+|||++|+.+++.. .+ ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 569999999999999996511 0 001234689999999999999999999843 12 2344554444
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HcCCceEEEEEeCCCCCC---hHHHhccccccCCCCCCcEEEEecC
Q 042290 87 FDAVGITKVILQADAGSVDVNDLNLLQLQLEN--QLKNKKFLLVLDDMWSEN---YDVRANLCKPFKAGLPGSKIIVTTR 161 (425)
Q Consensus 87 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~--~l~~k~~LLVlDdv~~~~---~~~~~~l~~~l~~~~~~~~ilvTtR 161 (425)
.... +....+......... ......... ...+++.+||||+++... ...+..+...+... +..||+++.
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~ 187 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSV---VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICN 187 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCS---TTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEES
T ss_pred chHH-HHHHHHHHHhccccH---HHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 4432 222222221110000 000000000 123567899999995432 22233444333322 334555544
Q ss_pred Ch---hhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh-hHHHHhh
Q 042290 162 NE---GVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP-LAAKTLG 228 (425)
Q Consensus 162 ~~---~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lai~~~~ 228 (425)
.. .+.. +......+.+.+++.++..+.+...+....... . ++....|++.++|.+ .++..+.
T Consensus 188 ~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i-~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL-D---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC-C---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 32 1222 222236799999999999998877654321111 1 245778999999954 4555553
No 27
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.76 E-value=4e-09 Score=94.21 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=100.8
Q ss_pred Cccccch---hhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGRE---KDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~---~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..|+|++ ..++.+..+.... ..+.+.|+|++|+|||+||+.+++... .....+.|+++......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHH-----
Confidence 5688743 4566666666432 335789999999999999999988432 22334566665431110
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHH--HhccccccCCC-CCC-cEEEEecCChhh--h--
Q 042290 95 VILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDV--RANLCKPFKAG-LPG-SKIIVTTRNEGV--S-- 166 (425)
Q Consensus 95 ~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~--~~~l~~~l~~~-~~~-~~ilvTtR~~~v--~-- 166 (425)
+. ..+ ..+ .++.+|||||++...... ...+...+... ..+ .++|+||+...- .
T Consensus 95 -----~~------------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 -----ST------------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp -----CG------------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred -----HH------------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 00 000 011 345699999996432222 23333322211 112 247777764321 0
Q ss_pred -hccCCC---CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhh
Q 042290 167 -SMVTTP---GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 167 -~~~~~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
..+... ...+.+.+++.++..+++...+..... .-.++....|++.++|++..+..+..
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 111100 157899999999999999887642211 12236778899999999877765544
No 28
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=4.2e-08 Score=90.18 Aligned_cols=191 Identities=16% Similarity=0.073 Sum_probs=104.2
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCCC-------CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
...-.+++|.+..+++|.+.+...-.. +-...+.+.|+|++|+|||+||+.+++.. .. ..+.+....-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~---~~~~v~~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NA---TFIRVVGSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TC---EEEEEEGGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CC---CEEEEehHHH
Confidence 344567999999999998887432000 00234568999999999999999998842 21 1223332211
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------Ch---HHHhccccccC--CC
Q 042290 87 FDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NY---DVRANLCKPFK--AG 150 (425)
Q Consensus 87 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~---~~~~~l~~~l~--~~ 150 (425)
. ..............+......++.+|+||+++.. .. ..+..+...+. ..
T Consensus 88 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 88 V--------------KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C--------------CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred H--------------HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 1 0001111112222233333456789999999421 11 11222222221 12
Q ss_pred CCCcEEEEecCChhhh-hcc-C--CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC-ChhHHH
Q 042290 151 LPGSKIIVTTRNEGVS-SMV-T--TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG-SPLAAK 225 (425)
Q Consensus 151 ~~~~~ilvTtR~~~v~-~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~ 225 (425)
..+..||.||...... ... . .....+.+...+.++..+++......... .... ....+++.+.| .|-.|.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~----~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDV----NLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTC----CHHHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcC----CHHHHHHHcCCCCHHHHH
Confidence 2456788888654221 111 1 11247899999999999999887643221 1111 24557777776 465555
Q ss_pred Hhh
Q 042290 226 TLG 228 (425)
Q Consensus 226 ~~~ 228 (425)
.+.
T Consensus 229 ~l~ 231 (285)
T 3h4m_A 229 AIC 231 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 29
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.72 E-value=2.2e-07 Score=87.47 Aligned_cols=174 Identities=13% Similarity=0.050 Sum_probs=109.6
Q ss_pred hhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc--------------------CCCeEEEEEe
Q 042290 24 EKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK--------------------YFSFRAWAYV 83 (425)
Q Consensus 24 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~ 83 (425)
++..+.|.+.+.... -...+.++|++|+|||++|+.+++...-.. +++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 455677777775432 345789999999999999999987432111 112 222221
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEe
Q 042290 84 SEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVT 159 (425)
Q Consensus 84 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvT 159 (425)
.. .......++..+.+... ..+++-++|+|+++.......+.++..+.....++.+|++
T Consensus 82 ~~-----------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 82 EK-----------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp CT-----------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred cc-----------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 10 00112222322222221 1245789999999877767777788777766667777766
Q ss_pred cCCh-hhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhh
Q 042290 160 TRNE-GVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 160 tR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
|.+. .+...+.+....+.+.+++.++...++.+.. .. .++.+..+++.++|.|..+..+..
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~~-------~~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--TM-------SQDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--CC-------CHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--CC-------CHHHHHHHHHHcCCCHHHHHHHhc
Confidence 6553 3433333444789999999999999998875 10 125567899999999987765543
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.69 E-value=2.9e-08 Score=92.33 Aligned_cols=162 Identities=14% Similarity=0.048 Sum_probs=92.8
Q ss_pred ccccchhhHHHHHHHhhCCC---------CCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 19 EVYGREKDKEAIVGLLLGDD---------LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~---------~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
.++|.+..++.|.+++.... -........+.|+|++|+|||+||+.+++............++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 58999998888876654210 000134457899999999999999988774422222211123333210
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC---------ChHHHhccccccCCCCCCcEEEEec
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE---------NYDVRANLCKPFKAGLPGSKIIVTT 160 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~---------~~~~~~~l~~~l~~~~~~~~ilvTt 160 (425)
.+...............+... +..+|+||+++.. .......+...+.....+..+|+||
T Consensus 109 ---------~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 109 ---------DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp ---------GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred ---------HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 011111111122222333332 2359999999632 4455566666666555677888888
Q ss_pred CChhhhhc------c-CCCCceeecCCCChhhHHHHHHHhhc
Q 042290 161 RNEGVSSM------V-TTPGAAHSLGNLLRDGCLRIFVQHSL 195 (425)
Q Consensus 161 R~~~v~~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 195 (425)
........ + ......+.+.+++.++...++...+.
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 65321110 0 11125789999999999999987764
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.68 E-value=3.9e-07 Score=82.46 Aligned_cols=190 Identities=12% Similarity=0.026 Sum_probs=101.0
Q ss_pred CCccccchhhHHHHHHHhh---CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 17 EKEVYGREKDKEAIVGLLL---GDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
-.+++|.+..++.|.+++. .... .+....+.+.|+|++|+|||+||+.+++.. .. ..+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~---~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QV---PFLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TC---CEEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEechHHHHhh-
Confidence 3578999988777766542 2110 011234568899999999999999998843 21 2334443322110
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC---------------hHHHhccccccCC--CCCC
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN---------------YDVRANLCKPFKA--GLPG 153 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~---------------~~~~~~l~~~l~~--~~~~ 153 (425)
........+...+.......+.+|+||+++... ......+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 001111222233333334567899999995421 0112223322222 1235
Q ss_pred cEEEEecCChh-hhhcc-C--CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHhh
Q 042290 154 SKIIVTTRNEG-VSSMV-T--TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTLG 228 (425)
Q Consensus 154 ~~ilvTtR~~~-v~~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~ 228 (425)
..+|.||.... +.... . .....+.+...+.++..+++...+..... ..........+++.+.|.+- .|..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 56776665532 21111 1 12257889999999999999877643221 11112234678888888643 554443
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.67 E-value=3.8e-07 Score=83.14 Aligned_cols=174 Identities=14% Similarity=0.108 Sum_probs=93.3
Q ss_pred CCccccchhhHHHHHH-------HhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 17 EKEVYGREKDKEAIVG-------LLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~-------~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
...++|....++.+.. .+.... ....+.+.|+|++|+|||+||+.+++.. . .. .+.++.+...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~~--~--~~-~~~i~~~~~~-- 101 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEES--N--FP-FIKICSPDKM-- 101 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHHH--T--CS-EEEEECGGGC--
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHHh--C--CC-EEEEeCHHHh--
Confidence 3568899887776665 332111 2456789999999999999999998842 2 22 2222322110
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC----------ChHHHhccccccCC---CCCCcEE
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE----------NYDVRANLCKPFKA---GLPGSKI 156 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~----------~~~~~~~l~~~l~~---~~~~~~i 156 (425)
...........+...+......++.+|+||+++.. .......+...+.. ......|
T Consensus 102 -----------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 -----------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -----------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -----------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00000000112223333444567899999998321 11122223222221 2234456
Q ss_pred EEecCChhhhhc---cCCCCceeecCCCCh-hhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 157 IVTTRNEGVSSM---VTTPGAAHSLGNLLR-DGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 157 lvTtR~~~v~~~---~~~~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
|.||........ .......+.+++++. ++...++.+.. . . ..+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~-----~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N-----F---KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C-----S---CHHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C-----C---CHHHHHHHHHHhcCC
Confidence 677766533221 222236788999988 56666655431 1 1 125577788888873
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.67 E-value=1.2e-07 Score=88.91 Aligned_cols=179 Identities=15% Similarity=0.112 Sum_probs=105.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|++..++.|.+++.... ...++.+.|++|+|||++|+.+++... ...+.++.+. .... .+...+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~-~~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD-CKID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT-CCHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc-cCHH-HHHHHH
Confidence 679999999999999997532 345788889999999999999988431 1234444333 2222 222222
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC-hHHHhccccccCCCCCCcEEEEecCChh-hhhccCCCCce
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-YDVRANLCKPFKAGLPGSKIIVTTRNEG-VSSMVTTPGAA 175 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~-~~~~~~l~~~l~~~~~~~~ilvTtR~~~-v~~~~~~~~~~ 175 (425)
....... ...+++.+||||+++... ....+.+...+.....+..+|+||.... +...+......
T Consensus 94 ~~~~~~~--------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 94 TNFASAA--------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHHBC--------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHHhhc--------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 1111000 012467899999997655 4555566655544345567887776532 21111111257
Q ss_pred eecCCCChhhHHHHHH-------HhhcCCCCcCCCcchH-HHHHHHHHhhCCChhHHHH
Q 042290 176 HSLGNLLRDGCLRIFV-------QHSLRRTDFVAHQYLS-EIGEKIVDRCNGSPLAAKT 226 (425)
Q Consensus 176 ~~l~~L~~~ea~~Lf~-------~~~~~~~~~~~~~~~~-~~~~~I~~~~~G~PLai~~ 226 (425)
+.+.+++.++-.+++. ..+.... ..-.+ +....|++.++|.+..+..
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~----~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEG----IAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHT----CCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 9999999887433322 2221111 11112 6677899999988764433
No 34
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.63 E-value=1.4e-07 Score=92.06 Aligned_cols=203 Identities=16% Similarity=0.089 Sum_probs=113.0
Q ss_pred Cccc-cchhh--HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCC--CeEEEEEeCCCCCHHHH
Q 042290 18 KEVY-GREKD--KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYF--SFRAWAYVSEDFDAVGI 92 (425)
Q Consensus 18 ~~~v-GR~~e--~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~ 92 (425)
..|+ |.... ...+......+. ....+.|+|++|+||||||+.+++.. ...+ ...++++.. .+
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-----~~~~lll~Gp~G~GKTtLa~aia~~l--~~~~~~~~v~~v~~~------~~ 171 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-----RYNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITSE------KF 171 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-----SSCCEEEECSSSSSHHHHHHHHHHHH--HHHCCSSCEEEEEHH------HH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-----CCCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeHH------HH
Confidence 3466 65543 334444443321 15678999999999999999999843 2222 234555432 23
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh--HHHhccccccCC-CCCCcEEEEecCChh-----
Q 042290 93 TKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY--DVRANLCKPFKA-GLPGSKIIVTTRNEG----- 164 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~--~~~~~l~~~l~~-~~~~~~ilvTtR~~~----- 164 (425)
...+...+... .. ..+...+..++.+|+|||++.... .....+...+.. ...+..||+||....
T Consensus 172 ~~~~~~~~~~~----~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 172 LNDLVDSMKEG----KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHHTT----CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHHcc----cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 34444443311 11 123333443567999999954321 223333333321 134678888887631
Q ss_pred ----hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhc------c-
Q 042290 165 ----VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLR------D- 233 (425)
Q Consensus 165 ----v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~------~- 233 (425)
+...+... ..+.+.+++.++...++.+.+....- ..+ ++....|++.++|++--+.-+...+. .
T Consensus 244 l~~~L~sR~~~g-~~i~l~~p~~e~r~~iL~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~ 318 (440)
T 2z4s_A 244 FQDRLVSRFQMG-LVAKLEPPDEETRKSIARKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK 318 (440)
T ss_dssp CCHHHHHHHHSS-BCCBCCCCCHHHHHHHHHHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhhccCC-eEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Confidence 11112212 57889999999999999887632111 111 25577788999999876655433221 1
Q ss_pred CCChHHHHHHHhh
Q 042290 234 KYDPKDWEDVLNS 246 (425)
Q Consensus 234 ~~~~~~w~~~l~~ 246 (425)
..+.+.++.++..
T Consensus 319 ~It~~~~~~~l~~ 331 (440)
T 2z4s_A 319 EVDLKEAILLLKD 331 (440)
T ss_dssp CCCHHHHHHHTST
T ss_pred CCCHHHHHHHHHH
Confidence 1345555555554
No 35
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=1.9e-07 Score=88.12 Aligned_cols=179 Identities=13% Similarity=0.165 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCC-eEEEEEeCCCCCHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFS-FRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 96 (425)
.+++|.+..++.|...+... ..+.+.++|++|+||||+|+.+++...- ..+. ...-++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~------- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGI------- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSH-------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccH-------
Confidence 45789999999998888653 2233899999999999999999884321 1111 1122222221122
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHH------cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhhhcc
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQ------LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVSSMV 169 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~------l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~~~~ 169 (425)
+...+.+... +.+.+-++|+|+++.......+.+...+......+.+|++|... .+...+
T Consensus 91 -------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 91 -------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp -------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred -------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 2222222111 12346789999997666566666666655544566777666542 222222
Q ss_pred CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHH-HHh
Q 042290 170 TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAA-KTL 227 (425)
Q Consensus 170 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai-~~~ 227 (425)
......+.+.+++.++..+.+...+....- .-.++..+.|++.++|.+--+ ..+
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~----~i~~~~~~~i~~~s~G~~r~~~~~l 212 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIANVLVHEKL----KLSPNAEKALIELSNGDMRRVLNVL 212 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHTTTC----CBCHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HhhceeEeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222357889999999998888776532111 112356788999999988744 444
No 36
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.56 E-value=7e-07 Score=83.52 Aligned_cols=193 Identities=15% Similarity=0.041 Sum_probs=106.4
Q ss_pred CCCCCccccchhhHHHHHHHhhCC------CCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGD------DLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~------~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
.+.=.+++|.+..++.|.+++..+ -.......+.+.|+|++|+|||+||+.+++.. ... .+.++.+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~---~~~v~~~--- 85 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSS--- 85 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH--TCE---EEEEEHH---
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH--CCC---EEEEchH---
Confidence 334467999999999998877210 00012334678999999999999999998842 221 2233321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh-----------HHHhccccccC---CCCCC
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY-----------DVRANLCKPFK---AGLPG 153 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~-----------~~~~~l~~~l~---~~~~~ 153 (425)
.+ .. .........+...+...-..++.+|+||+++.... .....++..+. ....+
T Consensus 86 ---~l----~~----~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 ---DL----VS----KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp ---HH----HT----TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred ---HH----hh----cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 00 00111111222222333345678999999953210 11222322222 23345
Q ss_pred cEEEEecCChh-hhhcc-CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC-ChhHHHHhhh
Q 042290 154 SKIIVTTRNEG-VSSMV-TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG-SPLAAKTLGG 229 (425)
Q Consensus 154 ~~ilvTtR~~~-v~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~~~ 229 (425)
..||.||.... +...+ ......+.+...+.++-.+++...+..... .........|++.+.| .+-.|..+..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666765532 11111 111256788889999999999887643221 1112456788899987 4656665554
No 37
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.54 E-value=3.2e-06 Score=78.93 Aligned_cols=194 Identities=14% Similarity=0.057 Sum_probs=106.7
Q ss_pred CCCCccccchhhHHHHHHHhhCC----C--CCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGD----D--LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
+.=.+++|.+..++.|.+.+..+ . .+.....+.|.|+|++|+|||+||+.+++... .. ..+.++.+.-.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~- 83 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV- 83 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC-
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH-
Confidence 33467899999888888766311 0 00122446789999999999999999998431 11 12333333211
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-------Ch----HHHhccccccCC---CCCCc
Q 042290 89 AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-------NY----DVRANLCKPFKA---GLPGS 154 (425)
Q Consensus 89 ~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-------~~----~~~~~l~~~l~~---~~~~~ 154 (425)
..........+...+...-..++.+|+||+++.. .. .....++..+.. ...+.
T Consensus 84 -------------~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 84 -------------SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -------------CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -------------hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 1111222233333333333467889999999532 00 111222222221 23455
Q ss_pred EEEEecCCh-hhhhcc-CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC-hhHHHHhhhh
Q 042290 155 KIIVTTRNE-GVSSMV-TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS-PLAAKTLGGL 230 (425)
Q Consensus 155 ~ilvTtR~~-~v~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLai~~~~~~ 230 (425)
.||.||... .+...+ ......+.+...+.++..+++......... .........|++.+.|. +-.|..+...
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN----SLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB----CCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 566566443 221111 122257888888999998999887633211 11235577899999886 5556666543
No 38
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.53 E-value=9.6e-08 Score=78.35 Aligned_cols=115 Identities=16% Similarity=-0.017 Sum_probs=70.6
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQ 98 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 98 (425)
+++|+...++++.+.+..-.. ....|.|+|++|+|||++|+.+++... ......+ +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~v--~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEFV--YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCCE--EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCEE--EECCCCCcc---------
Confidence 589999999999888754321 223478999999999999999988432 1122223 555433221
Q ss_pred HhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 99 ADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 99 ~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
.. ....+... ...+|+||+++.........+...+.......++|+||...
T Consensus 66 --------~~---~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --------PQ---LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp --------SC---HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred --------hh---hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 11 11112221 22478999997776666666666665555567888777653
No 39
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.51 E-value=1.5e-06 Score=82.39 Aligned_cols=191 Identities=15% Similarity=0.037 Sum_probs=104.2
Q ss_pred CCCccccchhhHHHHHHHhhCC----C--CCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGD----D--LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
.-.+++|.+..++.|.+.+..+ . .......+-|.|+|++|+|||+||+.+++.. .. ..+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~---~~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NS---TFFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TC---EEEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CC---CEEEeeHH-----
Confidence 3456999999999998876311 0 0011233568899999999999999999843 21 12223221
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh-----------HHHhccccccC---CCCCCcE
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY-----------DVRANLCKPFK---AGLPGSK 155 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~-----------~~~~~l~~~l~---~~~~~~~ 155 (425)
.+. ..........+...+......++.+|+||+++.... .....++..+. ....+..
T Consensus 119 -~l~--------~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 -DLV--------SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp -HHH--------SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred -HHh--------hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 111 111111222223333333345789999999953211 01222322222 1234556
Q ss_pred EEEecCChh-hhhc-cCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC-ChhHHHHhhh
Q 042290 156 IIVTTRNEG-VSSM-VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG-SPLAAKTLGG 229 (425)
Q Consensus 156 ilvTtR~~~-v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~~~ 229 (425)
||.||.... +... .......+.+...+.++..+++......... .........|++.+.| .+-.|..+..
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS----VLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666665431 1111 1122257788889999999999887643221 0113456778999988 5656666654
No 40
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.49 E-value=4.2e-07 Score=89.48 Aligned_cols=149 Identities=13% Similarity=0.105 Sum_probs=80.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---CC-C-eEEEEEeCCCCCHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK---YF-S-FRAWAYVSEDFDAVGI 92 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f-~-~~~wv~~~~~~~~~~~ 92 (425)
..+|||+.+++.+.+.|.... ..-+.|+|++|+|||+||+.+++...... .. . ..+.++++..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~------ 247 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK------ 247 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcc------
Confidence 459999999999999996532 23568999999999999999988431110 01 1 1222222200
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhh------
Q 042290 93 TKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVS------ 166 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~------ 166 (425)
..+ ....... ..+...-..++.+|++|. ..+....+...+.. ...++|.+|......
T Consensus 248 ------~~g--~~e~~~~---~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 248 ------YRG--EFEDRLK---KVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred ------ccc--hHHHHHH---HHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcC
Confidence 000 0111222 222233335678999992 11222334444432 245666666554311
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhc
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSL 195 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 195 (425)
..+......+.+.+.+.++...++.....
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 11111125799999999999999987653
No 41
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.46 E-value=2.6e-07 Score=97.88 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=81.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---C--CCeEEEEEeCCCCCHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK---Y--FSFRAWAYVSEDFDAVGI 92 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~--f~~~~wv~~~~~~~~~~~ 92 (425)
..++||+++++.+.+.|.... ...+.|+|++|+|||+||+.+++...... . -...++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 458999999999999996543 23478999999999999999988431110 0 11233443321110
Q ss_pred HHHHHHHhcCCCCCCCHHH-HHHHHHHHcC-CceEEEEEeCCCCCC--------hHHHhccccccCCCCCCcEEEEecCC
Q 042290 93 TKVILQADAGSVDVNDLNL-LQLQLENQLK-NKKFLLVLDDMWSEN--------YDVRANLCKPFKAGLPGSKIIVTTRN 162 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~~-~~~~l~~~l~-~k~~LLVlDdv~~~~--------~~~~~~l~~~l~~~~~~~~ilvTtR~ 162 (425)
+ .....+.+. +...+...-. +++.+|+||+++... .+....+...+.. .+..+|.+|..
T Consensus 240 --------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~ 308 (854)
T 1qvr_A 240 --------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTL 308 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECH
T ss_pred --------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCc
Confidence 0 001112222 2222222222 467999999996432 1111122222222 23455555543
Q ss_pred hhh-----hhccCCCCceeecCCCChhhHHHHHHHh
Q 042290 163 EGV-----SSMVTTPGAAHSLGNLLRDGCLRIFVQH 193 (425)
Q Consensus 163 ~~v-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 193 (425)
... ...+......+.+++++.++..+++...
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 322 1222222256899999999999998754
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.46 E-value=8.7e-07 Score=82.94 Aligned_cols=181 Identities=15% Similarity=0.104 Sum_probs=97.6
Q ss_pred Cccc-cchh--hHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVY-GREK--DKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~v-GR~~--e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..|+ |... ....+..++..+. .....+.|+|++|+|||+||+.+++..... . ...++++. ..+..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~------~~~~~ 78 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSA------DDFAQ 78 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEH------HHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEH------HHHHH
Confidence 4455 5433 3445555554432 134568999999999999999998843211 1 23455543 22333
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh--HHHhccccccCC-CCCCcEEEEecCChhh------
Q 042290 95 VILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY--DVRANLCKPFKA-GLPGSKIIVTTRNEGV------ 165 (425)
Q Consensus 95 ~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~--~~~~~l~~~l~~-~~~~~~ilvTtR~~~v------ 165 (425)
.+...+.. ...... ...+. ++.+|+|||++.... .....+...+.. ...+..+|+||.....
T Consensus 79 ~~~~~~~~----~~~~~~----~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 79 AMVEHLKK----GTINEF----RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHH----TCHHHH----HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHHc----CcHHHH----HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 33333321 111121 22222 356999999954322 222333333221 1235578887764311
Q ss_pred ---hhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHH
Q 042290 166 ---SSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKT 226 (425)
Q Consensus 166 ---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 226 (425)
...+... ..+.+.+ +.++...++...+..... .-.++....|++.+ |+.-.+..
T Consensus 150 ~~L~sR~~~~-~~i~l~~-~~~e~~~il~~~~~~~~~----~l~~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 150 DRLVSRFEGG-ILVEIEL-DNKTRFKIIKEKLKEFNL----ELRKEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp HHHHHHHHTS-EEEECCC-CHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHC-SSHHHHHH
T ss_pred hHhhhcccCc-eEEEeCC-CHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHhC-CCHHHHHH
Confidence 1111111 4689999 999999999887642211 11236677888888 87654433
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.44 E-value=2.7e-06 Score=80.70 Aligned_cols=191 Identities=12% Similarity=0.022 Sum_probs=104.7
Q ss_pred CCccccchhhHHHHHHHhhCC----CC--CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGD----DL--NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
-.+++|.+..++.|.+++... .. ......+.|.|+|++|+|||+||+.+++.. .. ..+.++.+.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhc--
Confidence 356899999999998877421 00 001234678999999999999999998742 11 233444432111
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------ChHHHhccccccCC----CCCCcE
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NYDVRANLCKPFKA----GLPGSK 155 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~~~~~~l~~~l~~----~~~~~~ 155 (425)
.............+......++.+|+||+++.. .......++..+.. ...+..
T Consensus 156 ------------~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 156 ------------KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ------------cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 000001111112222222356789999998321 00112233333221 123455
Q ss_pred EEEecCCh-hhhhcc-CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC-ChhHHHHhhhh
Q 042290 156 IIVTTRNE-GVSSMV-TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG-SPLAAKTLGGL 230 (425)
Q Consensus 156 ilvTtR~~-~v~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~~~~ 230 (425)
||.||... .+...+ ......+.+...+.++..+++...+..... .-..+....|++.+.| .+-.|..+...
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC----CLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC----CccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 66566542 222211 122246788888999988888776633211 1123567789999988 56667666543
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.44 E-value=3.6e-06 Score=82.24 Aligned_cols=194 Identities=15% Similarity=0.076 Sum_probs=104.8
Q ss_pred CCCCccccchhhHHHHHHHhhCC----CC--CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGD----DL--NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
+.-.+++|.+..++.|.+.+..+ .. +.....+.|.|+|++|+|||+||+.+++... . ..++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~-----~~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N-----STFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-S-----SEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-C-----CCEEEEeHHH-
Confidence 33466899999999888876311 00 0112346789999999999999999998431 1 1233333221
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC-----------hHHHhccccccCC---CCCCc
Q 042290 89 AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-----------YDVRANLCKPFKA---GLPGS 154 (425)
Q Consensus 89 ~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~---~~~~~ 154 (425)
+... ..+ ........+. ...-..++.+|+||+++... ......++..+.. ...+.
T Consensus 204 ---l~~~---~~g--~~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 ---LVSK---WLG--ESEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred ---HHhh---hcc--hHHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 1000 011 0112222222 22223567899999996421 1122233333322 23456
Q ss_pred EEEEecCCh-hhhhc-cCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC-ChhHHHHhhhh
Q 042290 155 KIIVTTRNE-GVSSM-VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG-SPLAAKTLGGL 230 (425)
Q Consensus 155 ~ilvTtR~~-~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~~~~ 230 (425)
.||.||... .+... .......+.+...+.++...+|......... . ........|++.+.| .+-.|..+...
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~---l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-S---LTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-E---CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-C---CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 677666543 22111 1122256788888888888888877633211 1 112456778899988 45566665543
No 45
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.42 E-value=2.1e-07 Score=79.25 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=39.3
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
-..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 356999999999999999653 33567899999999999999998743
No 46
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.38 E-value=2.5e-06 Score=78.70 Aligned_cols=191 Identities=12% Similarity=0.043 Sum_probs=101.5
Q ss_pred CCCCccccchhhHHHHHHHhhCCC------CCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGDD------LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~~------~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
..-.+++|.+..++.|.+++..+. .+.....+.+.|+|++|+|||+||+.+++.. .. ..+.++.+....
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~---~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SA---TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TC---EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CC---CeEEeeHHHHhh
Confidence 334679999999999988773310 0001134578999999999999999998842 21 123344332111
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHH-HHHHHHHcCCceEEEEEeCCCCCC-----------hHHHhcccccc---CCC--C
Q 042290 89 AVGITKVILQADAGSVDVNDLNLL-QLQLENQLKNKKFLLVLDDMWSEN-----------YDVRANLCKPF---KAG--L 151 (425)
Q Consensus 89 ~~~~~~~il~~l~~~~~~~~~~~~-~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l---~~~--~ 151 (425)
. ........ ...+......++.+|+||+++... ......++..+ ... .
T Consensus 93 --------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 --------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp --------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred --------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 01112222 222222334567899999994321 11111222211 111 1
Q ss_pred CCcEEEEecCChh-hhhc-cCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHhh
Q 042290 152 PGSKIIVTTRNEG-VSSM-VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTLG 228 (425)
Q Consensus 152 ~~~~ilvTtR~~~-v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~ 228 (425)
.+..||.||.... +... .......+.+...+.++...++...+..... .-..+....|++.+.|.+- .+..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456666666532 1111 1111146777777888888888766532211 1113556788999988775 555554
Q ss_pred h
Q 042290 229 G 229 (425)
Q Consensus 229 ~ 229 (425)
.
T Consensus 234 ~ 234 (297)
T 3b9p_A 234 K 234 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.34 E-value=1.5e-06 Score=85.38 Aligned_cols=100 Identities=9% Similarity=-0.005 Sum_probs=64.2
Q ss_pred EEEEEeCCCCCChHHHhccccccCCCCCCcEEEEe---------cC----ChhhhhccCCCCceeecCCCChhhHHHHHH
Q 042290 125 FLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVT---------TR----NEGVSSMVTTPGAAHSLGNLLRDGCLRIFV 191 (425)
Q Consensus 125 ~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvT---------tR----~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 191 (425)
-++++|+++..+.+..+.|+..+.......-|+.| |. ...+...+.+....+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 48999999888888888888887765555333345 32 111111122222567999999999999998
Q ss_pred HhhcCCCCcCCCcchHHHHHHHHHhh-CCChhHHHHhh
Q 042290 192 QHSLRRTDFVAHQYLSEIGEKIVDRC-NGSPLAAKTLG 228 (425)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~I~~~~-~G~PLai~~~~ 228 (425)
..+.... ..-.++.+..|++.+ +|.|.....+.
T Consensus 377 ~~~~~~~----~~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 377 IRAQTEG----INISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHT----CCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHhC----CCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 7753211 111236677888888 88887655544
No 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.34 E-value=1e-05 Score=75.89 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=98.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|.+..++.+...+..... .+.....+.|+|++|+||||||+.+++.. ...| ...+ +....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~---~~~s-g~~~~--------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNI---HVTS-GPVLV--------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCE---EEEE-TTTCC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEe-chHhc---------
Confidence 5689998888887776643200 01233578999999999999999999843 2111 1111 11110
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC------------------CCcEE-EE
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL------------------PGSKI-IV 158 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~------------------~~~~i-lv 158 (425)
...++...+ ..+. ++.++++|+++.......+.+...+.... +...+ ..
T Consensus 89 ----------~~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 89 ----------KQGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp ----------SHHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred ----------CHHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 111111111 1222 33478889886544333333322211100 11222 24
Q ss_pred ecCChhhhhccCCC-CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhh
Q 042290 159 TTRNEGVSSMVTTP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 159 TtR~~~v~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
|++...+...+... .....+++.+.++..+++.+.+.... ..-.++.+..|+++++|.|..+..+..
T Consensus 157 t~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~----~~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD----VEIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CCBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred cCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 55544332222222 13578999999999999988763211 112246788999999999976654443
No 49
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.34 E-value=2.3e-07 Score=75.87 Aligned_cols=111 Identities=11% Similarity=0.068 Sum_probs=63.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
-.++|++..++++.+.+..... ....|.|+|++|+|||++|+.+++... -++.+.-. .... ..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~~~~---~~- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-EYLI---DM- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-THHH---HC-
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechh-hCCh---Hh-
Confidence 3589999999888888754221 123478999999999999999987422 22222211 1111 00
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC-CCCcEEEEecCC
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG-LPGSKIIVTTRN 162 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-~~~~~ilvTtR~ 162 (425)
... +..... .-.|+||++..........+...+... ..+.++|+||..
T Consensus 67 --------------~~~-~~~~a~--~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 --------------PME-LLQKAE--GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------------HHH-HHHHTT--TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------------hhh-HHHhCC--CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 011 111112 247899999776666666665555433 345678887754
No 50
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.33 E-value=1e-05 Score=77.71 Aligned_cols=190 Identities=12% Similarity=0.054 Sum_probs=101.1
Q ss_pred CCccccchhhHHHHHHHhhCC----CC--CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGD----DL--NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
-.+++|.+..++.|..++... .. ......+.|.|+|++|+|||+||+.+++.. .. ..+.++++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cC---cEEEeeHHHhhcc-
Confidence 356999999999998887321 00 001234678999999999999999998742 11 2233333221110
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------ChHHHhccccccC---C-CCCCcE
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NYDVRANLCKPFK---A-GLPGSK 155 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~~~~~~l~~~l~---~-~~~~~~ 155 (425)
........+...+...-...+.+|+||+++.. .......++..+. . ......
T Consensus 188 -------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 -------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred -------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 00111122222222222345689999999432 0111112222221 1 123455
Q ss_pred EEEecCCh-hhhhcc-CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh-hHHHHhhh
Q 042290 156 IIVTTRNE-GVSSMV-TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP-LAAKTLGG 229 (425)
Q Consensus 156 ilvTtR~~-~v~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lai~~~~~ 229 (425)
||.||... .+...+ ......+.+...+.++..+++...+..... ....+....|++.+.|.. -.|..+..
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666542 222111 122246889999999999999877643211 112356778999998854 36655543
No 51
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.33 E-value=3.3e-06 Score=83.23 Aligned_cols=187 Identities=16% Similarity=0.118 Sum_probs=103.5
Q ss_pred CccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
.+++|.+..+++|.+++...-. .+....+-|.|+|++|+|||+||+.+++.. .. ..+.+++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~---~fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GA---FFFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SS---EEEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CC---CEEEEEch------
Confidence 4689999999999888753200 001234568999999999999999998742 21 22333321
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC--------C---hHHHhccccccCC--CCCCcEEE
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE--------N---YDVRANLCKPFKA--GLPGSKII 157 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~--------~---~~~~~~l~~~l~~--~~~~~~il 157 (425)
.+ . ..............+.....+++.+|+||+++.. . ......|+..+.. ...+..||
T Consensus 273 ~l----~----~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 273 EI----M----SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp HH----H----TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred Hh----h----hhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 11 1 1111111222333444444567889999998310 1 1122233333332 22345666
Q ss_pred EecCCh-hhhhccCC---CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC-hhHHHHhh
Q 042290 158 VTTRNE-GVSSMVTT---PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS-PLAAKTLG 228 (425)
Q Consensus 158 vTtR~~-~v~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLai~~~~ 228 (425)
.||... .+...+.. ....+.+...+.++-.+++..++..... ....+ ...+++.+.|. +-.|..+.
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHHH
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHHH
Confidence 666544 22222222 2257889999999999999887633221 11111 35577777774 55555543
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.31 E-value=1.6e-06 Score=90.74 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=81.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---CCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK---YFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..+|||+.+++.+.+.|.... ..-+.|+|++|+|||++|+.+++...... .....-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 469999999999999996643 23478999999999999999987431110 011111111111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhh------hhc
Q 042290 95 VILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGV------SSM 168 (425)
Q Consensus 95 ~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v------~~~ 168 (425)
+..........+...+......++.+|++|.- .+....+...+.. ...++|.||..... ...
T Consensus 245 ------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 245 ------GTKYRGEFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSH
T ss_pred ------cccccchHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccHH
Confidence 00000011112222333333467789999922 1222334444432 34567766665432 111
Q ss_pred cCCCCceeecCCCChhhHHHHHHHhh
Q 042290 169 VTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 169 ~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
+......+.+...+.++..+++....
T Consensus 313 l~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 313 LERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11112579999999999999998654
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.29 E-value=1e-05 Score=74.82 Aligned_cols=186 Identities=13% Similarity=0.040 Sum_probs=100.5
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.+.-.+++|.+..+++|.+++...-. .+-...+.+.|+|++|+|||+||+.+++.. .. . ++.+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~---~--~i~v~-- 81 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QA---N--FISIK-- 81 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---E--EEEEC--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CC---C--EEEEE--
Confidence 33445799999988888877643100 001234578999999999999999999843 21 1 22222
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC--------------hHHHhccccccCC--C
Q 042290 87 FDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN--------------YDVRANLCKPFKA--G 150 (425)
Q Consensus 87 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~--------------~~~~~~l~~~l~~--~ 150 (425)
...+.... .+ . ....+...+.......+.+|+||+++... ......++..+.. .
T Consensus 82 --~~~l~~~~---~g-~----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 --GPELLTMW---FG-E----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp --HHHHHHHH---HT-T----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred --hHHHHhhh---cC-c----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 22222221 11 1 11223333444444568999999994210 0112233333321 1
Q ss_pred CCCcEEEEecCChh-hhhc-cC--CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhH
Q 042290 151 LPGSKIIVTTRNEG-VSSM-VT--TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLA 223 (425)
Q Consensus 151 ~~~~~ilvTtR~~~-v~~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLa 223 (425)
..+..||.||.... +... .. .....+.+...+.++-.+++......... ....+ ...+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 23567777775542 2222 21 22357889999999988888776533221 11112 23466667776543
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.26 E-value=2.5e-06 Score=79.14 Aligned_cols=136 Identities=16% Similarity=0.155 Sum_probs=76.0
Q ss_pred CccccchhhHHHHHHHhhCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..++|.+..++.|...+..... ........+.|+|++|+|||++|+.+++.. ...-...+.++++...... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHH
Confidence 4588999999888887754310 011234689999999999999999998843 2111224555554433211 111
Q ss_pred HHHHHhcCCC---CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEec
Q 042290 95 VILQADAGSV---DVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTT 160 (425)
Q Consensus 95 ~il~~l~~~~---~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTt 160 (425)
.+ ++... .......+...+.. ....+|+||+++.........+...+.... ..+.+|+||
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred Hh---cCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 11 22111 11111223333322 334699999997766666666665543221 234477777
Q ss_pred CC
Q 042290 161 RN 162 (425)
Q Consensus 161 R~ 162 (425)
..
T Consensus 168 n~ 169 (311)
T 4fcw_A 168 NL 169 (311)
T ss_dssp ST
T ss_pred cc
Confidence 65
No 55
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.26 E-value=8.7e-07 Score=75.35 Aligned_cols=122 Identities=17% Similarity=0.077 Sum_probs=64.7
Q ss_pred chhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 042290 23 REKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAG 102 (425)
Q Consensus 23 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 102 (425)
++..++.+.+++..-.. .....+.|+|++|+|||||++.+++.......+. +++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcC
Confidence 44455566655544321 2346899999999999999999988543122222 23333 34444444443331
Q ss_pred CCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHh--ccccccCCC-CCCcEEEEecCCh
Q 042290 103 SVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRA--NLCKPFKAG-LPGSKIIVTTRNE 163 (425)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~--~l~~~l~~~-~~~~~ilvTtR~~ 163 (425)
.... .....+. ++-+|||||++....+.|. .+...+... ..+..+|+||...
T Consensus 89 ~~~~----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKDT----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCCS----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chHH----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111 2222222 3458999999732222332 233322221 2467888888754
No 56
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=4.8e-06 Score=76.98 Aligned_cols=149 Identities=10% Similarity=-0.036 Sum_probs=95.1
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcc-cccCCCeEEEEEeCC-CCCHHHHHHHHHHH
Q 042290 22 GREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR-VKKYFSFRAWAYVSE-DFDAVGITKVILQA 99 (425)
Q Consensus 22 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~il~~ 99 (425)
|-++.++.|.+.+... +.+...++|++|+|||++|..+++... ....+....++.... ......+ +.+...
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 4456677788877543 257899999999999999999987311 111122334444332 2222222 233333
Q ss_pred hcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhhhccCCCCceeec
Q 042290 100 DAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVSSMVTTPGAAHSL 178 (425)
Q Consensus 100 l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~~~~~~~~~~~~l 178 (425)
+...+ ..+++-++|+|+++.......+.|+..+....+.+.+|++|.+ ..+...+.+. .+++
T Consensus 74 ~~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f 136 (305)
T 2gno_A 74 LNYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRV 136 (305)
T ss_dssp HTSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEE
T ss_pred Hhhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeC
Confidence 32110 1245679999999887778888888888776677777776644 3344444444 8999
Q ss_pred CCCChhhHHHHHHHhh
Q 042290 179 GNLLRDGCLRIFVQHS 194 (425)
Q Consensus 179 ~~L~~~ea~~Lf~~~~ 194 (425)
.+++.++....+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998775
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.25 E-value=9.6e-07 Score=81.81 Aligned_cols=160 Identities=11% Similarity=0.000 Sum_probs=84.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+.+... +... ..+.++++... . .++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~-~~v~v~~~~~~-~-~l~~~~- 72 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSA-RSDR-PLVTLNCAALN-E-SLLESE- 72 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSS-CSSS-CCCEEECSSCC-H-HHHHHH-
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCc-ccCC-CeEEEeCCCCC-h-HHHHHH-
Confidence 4689999999998888765332 234578999999999999999987321 1111 12344544332 2 222111
Q ss_pred HHhcCCCCCCC--HHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC-----------CCCcEEEEecCChh
Q 042290 98 QADAGSVDVND--LNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG-----------LPGSKIIVTTRNEG 164 (425)
Q Consensus 98 ~~l~~~~~~~~--~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-----------~~~~~ilvTtR~~~ 164 (425)
.++.....-. .......+... . .-+|+||++..........+...+... ....+||.||...-
T Consensus 73 -lfg~~~g~~tg~~~~~~g~~~~a-~--~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l 148 (304)
T 1ojl_A 73 -LFGHEKGAFTGADKRREGRFVEA-D--GGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL 148 (304)
T ss_dssp -HTCCCSSCCC---CCCCCHHHHH-T--TSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCH
T ss_pred -hcCccccccCchhhhhcCHHHhc-C--CCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccH
Confidence 1221100000 00000111111 1 247999999876665555555544332 13467888776531
Q ss_pred ---h---------hhccCCCCceeecCCCC--hhhHHHHHHH
Q 042290 165 ---V---------SSMVTTPGAAHSLGNLL--RDGCLRIFVQ 192 (425)
Q Consensus 165 ---v---------~~~~~~~~~~~~l~~L~--~~ea~~Lf~~ 192 (425)
+ ...+. ...+.+++|. .++...++..
T Consensus 149 ~~~v~~g~fr~~L~~Rl~--~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 149 AEEVSAGRFRQDLYYRLN--VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HHHHHHTSSCHHHHHHHS--SEEEECCCSGGGGGGHHHHHHH
T ss_pred HHHHHhCCcHHHHHhhcC--eeEEeccCHHHhHhhHHHHHHH
Confidence 1 11111 1357788888 4555555443
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.24 E-value=4.4e-06 Score=87.50 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=87.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc----CCCeEEEE-EeCCCCCHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK----YFSFRAWA-YVSEDFDAVGI 92 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv-~~~~~~~~~~~ 92 (425)
..++||+.+++.+.+.|... ....+.|+|++|+|||++|+.+++...... .....++. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 45899999999999999653 234578999999999999999987432111 12233332 11110
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHH-HcCCceEEEEEeCCCCC--------ChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 93 TKVILQADAGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWSE--------NYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~~~~~~l~~-~l~~k~~LLVlDdv~~~--------~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
..........+.....+.. ....++.+|+||+++.. .......++..+... ....+|.+|...
T Consensus 254 -------~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_dssp --------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHH
T ss_pred -------hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCch
Confidence 0011112233333333333 33446789999999643 122222223222222 345666666543
Q ss_pred hhhhc------cCCCCceeecCCCChhhHHHHHHHhh
Q 042290 164 GVSSM------VTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 164 ~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
..... +......+.+...+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 32111 11111468899999999988887654
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.20 E-value=1.4e-06 Score=79.12 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=67.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|++..+.++.+.+..... ....|.|+|++|+|||+||+.+++... ..-...+.++++... ...+...+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~~-~~~~~~~l- 77 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSEL- 77 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGSC-HHHHHHHH-
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCCC-hhHHHHHh-
Confidence 4589999999888776654221 224578999999999999999988432 111224455555432 22111111
Q ss_pred HHhcCCCCC-CC-HHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC-----------CCCcEEEEecCC
Q 042290 98 QADAGSVDV-ND-LNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG-----------LPGSKIIVTTRN 162 (425)
Q Consensus 98 ~~l~~~~~~-~~-~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-----------~~~~~ilvTtR~ 162 (425)
++..... .. .......+.. ...-+|+||+++.........+...+... ....++|+||..
T Consensus 78 --~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 78 --FGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp --HCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred --cCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 1111000 00 0000001111 12348999999766655555555444321 134678888765
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.1e-05 Score=74.75 Aligned_cols=179 Identities=15% Similarity=0.038 Sum_probs=98.5
Q ss_pred CccccchhhHHHHHHHhhCC----CC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 18 KEVYGREKDKEAIVGLLLGD----DL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~----~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
.++.|-++.+++|.+.+.-+ .. .+-..++-|.++|++|+|||.||+++++... .. .+.++.+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~---f~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CK---FIRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CE---EEEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CC---ceEEEhHHhh---
Confidence 56788988888887665321 00 0123446689999999999999999998432 22 2334433211
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC--------------hHHHhccccccCC--CCCCc
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN--------------YDVRANLCKPFKA--GLPGS 154 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~--------------~~~~~~l~~~l~~--~~~~~ 154 (425)
..........+...+...-...+++|+||+++... ......++..+.. ...+.
T Consensus 220 -----------sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 220 -----------QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp -----------CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred -----------ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 11112222223333333334678999999995311 0112233333332 23445
Q ss_pred EEEEecCCh-hhhhcc---CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 155 KIIVTTRNE-GVSSMV---TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 155 ~ilvTtR~~-~v~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.||.||... .+...+ +.....+.++.-+.++-.++|..+.....- ...-+ ...|++.|.|.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSC
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCC
Confidence 566666543 222222 122478899888888888888776533211 11222 45577788774
No 61
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.14 E-value=1.6e-06 Score=75.12 Aligned_cols=127 Identities=16% Similarity=0.137 Sum_probs=65.8
Q ss_pred Cccccch----hhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHH
Q 042290 18 KEVYGRE----KDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGIT 93 (425)
Q Consensus 18 ~~~vGR~----~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 93 (425)
..|++.. ..++.+.+++..... ....+.+.|+|++|+|||+||+.+++.. ......++++++. .+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~ 94 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELF 94 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHH
Confidence 4566644 344555666654321 1122678999999999999999999843 2333345666542 333
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhc--ccc-ccCCC-CCCcEEEEecCCh
Q 042290 94 KVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRAN--LCK-PFKAG-LPGSKIIVTTRNE 163 (425)
Q Consensus 94 ~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~--l~~-~l~~~-~~~~~ilvTtR~~ 163 (425)
..+..... ..........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||...
T Consensus 95 ~~~~~~~~----~~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 95 RELKHSLQ----DQTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHHC-------CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHhc----cchHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 43333221 1122333333332 2399999996543333221 221 11111 2345788888753
No 62
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.12 E-value=6.4e-06 Score=76.27 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHhhCC--CCC------CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 18 KEVYGREKDKEAIVGLLLGD--DLN------SGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~--~~~------~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++|++..++.|...+... ..+ .......+.|+|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999998877541 000 0012356889999999999999999884
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=6.4e-05 Score=67.57 Aligned_cols=188 Identities=16% Similarity=0.109 Sum_probs=97.1
Q ss_pred CCCccccchhhHHHHHHHhh---CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 16 NEKEVYGREKDKEAIVGLLL---GDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
.-.+++|.+..+++|.+.+. .... .+....+-+.|+|++|+|||+||+.+++.. ... .+.++...-..
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~i~~~~~~~- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFVE- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSSTT-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCC---EEEEeHHHHHH-
Confidence 34678999988777665432 2110 001123458899999999999999998843 211 23333221110
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC------------C--hHHHhccccccCC--CCCC
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE------------N--YDVRANLCKPFKA--GLPG 153 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~------------~--~~~~~~l~~~l~~--~~~~ 153 (425)
.........+...+.......+.++++|+++.. . ......++..+.. ...+
T Consensus 84 -------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 011122333344444444566789999998310 0 0112222222221 1234
Q ss_pred cEEEEecCChh-hhhccC---CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC-ChhHHHHh
Q 042290 154 SKIIVTTRNEG-VSSMVT---TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG-SPLAAKTL 227 (425)
Q Consensus 154 ~~ilvTtR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~ 227 (425)
..||.||.... +..... .....+.+...+.++-.+++........ ..... ....++..+.| ++--|..+
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~----~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDI----DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCccc----cHHHHHHHcCCCCHHHHHHH
Confidence 56666665532 222221 1125677888888888888876653211 11111 13446777777 66555544
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.4e-05 Score=76.91 Aligned_cols=182 Identities=14% Similarity=0.068 Sum_probs=93.7
Q ss_pred CCCCccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
+.-.++.|-++.+++|.+.+.-+-. .+-..++-|.++|++|+|||+||+++++... . ..+.++.+.-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~---~~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--A---AFIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--C---EEEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--C---CeEEEecchhh
Confidence 3345688999888888776532100 0123456789999999999999999998432 2 12334433221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC-----------CC---hHHHhccccccCC--CC
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWS-----------EN---YDVRANLCKPFKA--GL 151 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~-----------~~---~~~~~~l~~~l~~--~~ 151 (425)
+ .........+...+...-...+++|++|+++. .+ ......++..+.. ..
T Consensus 244 ~--------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 244 H--------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp C--------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred c--------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 1 11111222233333333346789999999831 01 0112333333321 22
Q ss_pred CCcEEEEecCCh-hhhhccC---CCCceeecCCCChhhH-HHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 152 PGSKIIVTTRNE-GVSSMVT---TPGAAHSLGNLLRDGC-LRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 152 ~~~~ilvTtR~~-~v~~~~~---~~~~~~~l~~L~~~ea-~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.+..||.||... .+...+- .....+.+..++..++ ..+|..+..... .....+ ...|++.|.|.
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCC----HHHHHHHTTTC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHHCCCC
Confidence 455667676543 2222221 1124677866655444 455655442221 111122 35577777764
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=8.3e-06 Score=78.57 Aligned_cols=181 Identities=13% Similarity=0.041 Sum_probs=96.3
Q ss_pred CCCccccchhhHHHHHHHhhC----CCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 16 NEKEVYGREKDKEAIVGLLLG----DDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
.=.++.|-++.+++|.+.+.- +.. .+-..++-|.++|++|+|||.||+++++... . ..+.++.+.-.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~---~f~~v~~s~l~- 252 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--A---TFLKLAAPQLV- 252 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--C---EEEEEEGGGGC-
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--C---CEEEEehhhhh-
Confidence 335689999988888766422 110 0223457789999999999999999998432 2 12333332211
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC------CC-----h---HHHhccccccCCC--CC
Q 042290 89 AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWS------EN-----Y---DVRANLCKPFKAG--LP 152 (425)
Q Consensus 89 ~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~------~~-----~---~~~~~l~~~l~~~--~~ 152 (425)
..........+...+...-...+++|++|+++. .. . .....++..+... ..
T Consensus 253 -------------~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 253 -------------QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -------------SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -------------hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 111111112222222223335689999999831 00 0 0122233333322 23
Q ss_pred CcEEEEecCCh-hhhhccCC---CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 153 GSKIIVTTRNE-GVSSMVTT---PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 153 ~~~ilvTtR~~-~v~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
+..||.||... .+...+-. ....+.++..+.++-.++|..+...... ...-+ ...|++.|.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 45666676543 23222211 1357888888888888888766532211 11112 35577778764
No 66
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.99 E-value=0.00012 Score=75.88 Aligned_cols=183 Identities=16% Similarity=0.129 Sum_probs=102.5
Q ss_pred CCCCccccchhhHHHHHHHhh----CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLL----GDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~----~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
+.-.++.|-++.+++|.+++. .+.. -+-..++-|.++|++|+|||+||+.+++... . ..+.++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~---~~~~v~~~~-- 273 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A---FFFLINGPE-- 273 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--C---EEEEEEHHH--
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--C---eEEEEEhHH--
Confidence 333568899888888777652 2211 1224567799999999999999999999532 2 123443221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC-----------hHHHhccccccCCC--CCCc
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-----------YDVRANLCKPFKAG--LPGS 154 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~~--~~~~ 154 (425)
+...........+...+.......+++|+||+++.-. ......++..+... ..+.
T Consensus 274 ------------l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 ------------IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ------------HHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred ------------hhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 1111222333444455555566789999999984210 01122222222211 1344
Q ss_pred EEEEecCC-hhhhhccC---CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh
Q 042290 155 KIIVTTRN-EGVSSMVT---TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP 221 (425)
Q Consensus 155 ~ilvTtR~-~~v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 221 (425)
.||.||.. ..+...+. .....+++...+.++-.++|..+...... ....+ ...|++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 55656544 33333332 22367889988888888888876532211 11122 455777887753
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.0001 Score=71.01 Aligned_cols=179 Identities=16% Similarity=0.063 Sum_probs=97.7
Q ss_pred CccccchhhHHHHHHHhhC----CCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 18 KEVYGREKDKEAIVGLLLG----DDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
.++.|-++.+++|.+.+.- +.. -+-..++-|.++|++|+|||.||+++++... .. .+.++.+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~---fi~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--AT---FIRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CC---eEEEEhHHhh---
Confidence 5688999888888765421 100 0123556789999999999999999998432 21 2334333211
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC--------------hHHHhccccccCC--CCCCc
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN--------------YDVRANLCKPFKA--GLPGS 154 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~--------------~~~~~~l~~~l~~--~~~~~ 154 (425)
..........+...+...-...+++|++|+++... ......++..+.. ...+.
T Consensus 281 -----------sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 281 -----------QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp -----------CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred -----------cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 11111222223333333344678999999995310 0111222322222 22344
Q ss_pred EEEEecCC-hhhhhcc---CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 155 KIIVTTRN-EGVSSMV---TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 155 ~ilvTtR~-~~v~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.||.||.. ..+...+ +.....+.+...+.++-.++|..+...... ...-+ ...|++.|.|.
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNS 414 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHHCCSC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCC----HHHHHHHCCCC
Confidence 56666644 3222222 223478888888888888888776533211 11112 35577788774
No 68
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.98 E-value=3.4e-06 Score=76.55 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=81.4
Q ss_pred CCCccccchhhHHHHHHHhhCCCCC------CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLN------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
.-.+++|.+..++.|.+.+..-..+ +....+-+.|+|++|+|||+||+.+++.. ...|- .+..+.-.+
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~~---~v~~~~~~~- 82 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--HVPFF---SMGGSSFIE- 82 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH--TCCCC---CCCSCTTTT-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCEE---EechHHHHH-
Confidence 3467999999888887766410000 00112337899999999999999998843 22221 111111000
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChH---------------HHhccccccCCC---C
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYD---------------VRANLCKPFKAG---L 151 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~---------------~~~~l~~~l~~~---~ 151 (425)
.... ........+ +......++.+|+||+++..... ....++..+... .
T Consensus 83 ---------~~~~-~~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 83 ---------MFVG-LGASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp ---------SCSS-SCSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred ---------hhcc-hHHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 0000 011111111 22222245679999999432111 122233333221 1
Q ss_pred CCcEEEEecCChhh-hhc-cC--CCCceeecCCCChhhHHHHHHHhh
Q 042290 152 PGSKIIVTTRNEGV-SSM-VT--TPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 152 ~~~~ilvTtR~~~v-~~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
....||.||..... ... .. .....+.+...+.++..+++...+
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 22456667665421 111 11 112567888888888888887665
No 69
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00013 Score=70.32 Aligned_cols=182 Identities=14% Similarity=0.105 Sum_probs=99.0
Q ss_pred CCCCccccchhhHHHHHHHhhCC---CC----CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGD---DL----NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~---~~----~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
+.=.++.|-++.+++|.+.+.-+ .. .+-..++-|.++|++|+|||.||+++++... .. .+.++.+.-.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~---~~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--AN---FIFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEehhhhc
Confidence 33456789988888777665321 00 0123456789999999999999999998432 21 2334433221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------C---hHHHhccccccCC--CC
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------N---YDVRANLCKPFKA--GL 151 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~---~~~~~~l~~~l~~--~~ 151 (425)
+ .........+...+...-...+++|++|+++.. + ......++..+.. ..
T Consensus 253 s--------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 253 D--------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp C--------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred c--------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 1 111111222223333333467899999999531 0 0112233333322 22
Q ss_pred CCcEEEEecCCh-hhhhccCC---CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 152 PGSKIIVTTRNE-GVSSMVTT---PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 152 ~~~~ilvTtR~~-~v~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.+..||.||... .+...+-. ....+.++..+.++-.++|..+...... ....+ ...|++.+.|.
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGF 386 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCC
Confidence 345677766543 23222211 1256888888888888888776543221 11122 35577788774
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.90 E-value=3.8e-05 Score=80.26 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=89.4
Q ss_pred CccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..++|.+..++.+...+.....+ .......+.++|++|+|||+||+.+++.. ...-...+.++++.....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccc-----
Confidence 45899999998888887643321 11234479999999999999999998843 222223455555432210
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC-----------CCCcEEEEecCCh
Q 042290 95 VILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG-----------LPGSKIIVTTRNE 163 (425)
Q Consensus 95 ~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-----------~~~~~ilvTtR~~ 163 (425)
.......+...++. ....+|+||++.....+....|...+..+ .....||+||...
T Consensus 564 ----------~~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 564 ----------HSTSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ----------CCCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----------cccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 00001111222222 23458999999777766666666655432 1356888888731
Q ss_pred h-------------hhh-ccCCCCceeecCCCChhhHHHHHHHh
Q 042290 164 G-------------VSS-MVTTPGAAHSLGNLLRDGCLRIFVQH 193 (425)
Q Consensus 164 ~-------------v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~ 193 (425)
. +.. ........+.+.+++.++...++...
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 0 000 11111247888888888777776654
No 71
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.87 E-value=0.00011 Score=71.76 Aligned_cols=181 Identities=15% Similarity=0.040 Sum_probs=97.7
Q ss_pred CCccccchhhHHHHHHHhhCCCC------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDL------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
-.+++|.+..+++|.+....-.. -+...++-|.|+|++|+|||+||+.++... ... .+.++.++-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH-
Confidence 35699999887777665432100 011123348899999999999999999843 222 233443322110
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh--------------HHHhccccccCC--CCCCc
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY--------------DVRANLCKPFKA--GLPGS 154 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~--------------~~~~~l~~~l~~--~~~~~ 154 (425)
............+.....+.+.+|+||+++.... .....++..+.. ...+.
T Consensus 89 -------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 -------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred -------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0001112233344444556789999999943110 122333333221 12355
Q ss_pred EEEEecCChhhh-hcc-C--CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh
Q 042290 155 KIIVTTRNEGVS-SMV-T--TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP 221 (425)
Q Consensus 155 ~ilvTtR~~~v~-~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 221 (425)
.||.||...+.. ..+ . .....+.+...+.++-.+++..+.....- ....+ ...|++.+.|+.
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 677777654322 111 1 22247888888888888888766533211 11111 345788888877
No 72
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.84 E-value=3.3e-05 Score=72.33 Aligned_cols=153 Identities=13% Similarity=0.042 Sum_probs=85.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|++..++.+...+.... .+.++|++|+|||+||+.+++.. ... ...+.+........+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~~~--~~~---~~~i~~~~~~~~~~l~g~-- 91 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKTM--DLD---FHRIQFTPDLLPSDLIGT-- 91 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHHT--TCC---EEEEECCTTCCHHHHHEE--
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHHHh--CCC---eEEEecCCCCChhhcCCc--
Confidence 568999999999988886532 48899999999999999998832 222 223444433333322111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCC--ceEEEEEeCCCCCChHHHhccccccCC-----------CCCCcEEEEecCChh
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKN--KKFLLVLDDMWSENYDVRANLCKPFKA-----------GLPGSKIIVTTRNEG 164 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~--k~~LLVlDdv~~~~~~~~~~l~~~l~~-----------~~~~~~ilvTtR~~~ 164 (425)
.......... ....+ ...+|++|+++.........+...+.. ......++.|+....
T Consensus 92 --~~~~~~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 92 --MIYNQHKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp --EEEETTTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred --eeecCCCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 0000000000 00000 125899999976665555544443321 123445665655322
Q ss_pred ------hhh-ccCCCCceeecCCCChhhHHHHHHHhhc
Q 042290 165 ------VSS-MVTTPGAAHSLGNLLRDGCLRIFVQHSL 195 (425)
Q Consensus 165 ------v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 195 (425)
+.. ........+.+...+.++-.+++.+...
T Consensus 162 ~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred ccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 111 1112213588888888888888877653
No 73
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00012 Score=69.80 Aligned_cols=181 Identities=15% Similarity=0.066 Sum_probs=95.7
Q ss_pred CCCccccchhhHHHHHHHhhC----CCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 16 NEKEVYGREKDKEAIVGLLLG----DDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
.=.++.|-++.+++|.+.+.- +.. .+-..++-|.++|++|+|||.||+++++... .. .+.++.+.-.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~---fi~v~~s~l~- 253 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--AT---FLRIVGSELI- 253 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CE---EEEEESGGGC-
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CC---EEEEEHHHhh-
Confidence 335678888888877765532 110 0223456789999999999999999998432 21 2233322211
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------C---hHHHhccccccCC--CCC
Q 042290 89 AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------N---YDVRANLCKPFKA--GLP 152 (425)
Q Consensus 89 ~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~---~~~~~~l~~~l~~--~~~ 152 (425)
..........+...+...-...+++|++|+++.. + ......++..+.. ...
T Consensus 254 -------------sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -------------QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -------------CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -------------hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 1111112222222333333466899999998521 0 0112223332221 223
Q ss_pred CcEEEEecCC-hhhhhccCC---CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 153 GSKIIVTTRN-EGVSSMVTT---PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 153 ~~~ilvTtR~-~~v~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
+..||.||.. ..+...+-. ....+.+..-+.++-.++|..+..... ....-+ ...|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 4556666644 333322221 124677888788888888877653321 111222 34577777764
No 74
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.74 E-value=9.8e-06 Score=66.48 Aligned_cols=86 Identities=16% Similarity=0.050 Sum_probs=49.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
..+.|+|+.|+|||||++.++...... .+ ..+++...+.... .+..+.-
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-----------------------------~~~~~~~ 85 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-----------------------------DAAFEAE 85 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-----------------------------GGGGGCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-----------------------------HHHhCCC
Confidence 478999999999999999998854321 11 2566654432211 0112456
Q ss_pred EEEEeCCCCCChHHHhccccccCCC-CCCc-EEEEecCC
Q 042290 126 LLVLDDMWSENYDVRANLCKPFKAG-LPGS-KIIVTTRN 162 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~~l~~~l~~~-~~~~-~ilvTtR~ 162 (425)
+|||||+.......-..+...+... ..|. .+|+||+.
T Consensus 86 lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 86 YLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp EEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred EEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 8999999654432222233222211 1233 48888874
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.74 E-value=2.2e-05 Score=82.16 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=73.8
Q ss_pred CccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..++|.+..++.|...+.....+ .+.....+.++|++|+|||++|+.+++.. . ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 45889999888887776532210 12344579999999999999999998843 1 2334455443221100
Q ss_pred HHHHHhcCCCCCCC---HHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEec
Q 042290 95 VILQADAGSVDVND---LNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTT 160 (425)
Q Consensus 95 ~il~~l~~~~~~~~---~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTt 160 (425)
+...++....... ...+...++. ....+|+||++.....+....|+..+..+. ....||+||
T Consensus 530 -~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 530 -VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp -CSSSCCCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred -HhhhcCCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 0000111111000 0112222322 346799999997766666666666554321 234577777
Q ss_pred CC
Q 042290 161 RN 162 (425)
Q Consensus 161 R~ 162 (425)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 76
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.64 E-value=1.9e-05 Score=73.10 Aligned_cols=56 Identities=14% Similarity=0.024 Sum_probs=34.7
Q ss_pred hhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEe
Q 042290 24 EKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYV 83 (425)
Q Consensus 24 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~ 83 (425)
...++.+.+++..... .....+.|+|++|+|||+||..+++.... ..-..+.++.+
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3344555566654321 12357889999999999999999985331 22223555553
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.63 E-value=9.1e-05 Score=68.04 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+.++.+.|+|++|+|||+||+.+++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455688999999999999999999843
No 78
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.62 E-value=0.00011 Score=73.61 Aligned_cols=164 Identities=17% Similarity=0.117 Sum_probs=78.4
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQ 98 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 98 (425)
+++|-++-.+.+.+.+.-..-........+.|+|++|+||||||+.++... ... ..-+.++...+...+......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~---~~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRK---FVRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCE---EEEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCC---eEEEEecccchhhhhhhHHHH
Confidence 478877776666544321100001245689999999999999999998743 211 222333322221111111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChH----HHhccccccCCCC---------------CCcEEEEe
Q 042290 99 ADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYD----VRANLCKPFKAGL---------------PGSKIIVT 159 (425)
Q Consensus 99 ~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~----~~~~l~~~l~~~~---------------~~~~ilvT 159 (425)
..+ .........+...... .-+|+||+++..... ....++..+.... ....+|.|
T Consensus 157 ~ig-----~~~~~~~~~~~~a~~~-~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 157 YVG-----AMPGRIIQGMKKAGKL-NPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp ------------CHHHHHHTTCSS-SEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred Hhc-----cCchHHHHHHHHhhcc-CCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 111 0011112222222223 348899999654332 2344555443211 23466766
Q ss_pred cCChh-hhh-ccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 160 TRNEG-VSS-MVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 160 tR~~~-v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
|.... +.. ..... ..+.+.+++.++-..++..+.
T Consensus 231 tN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHH
Confidence 66532 111 11111 468999999999888887764
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.58 E-value=0.00022 Score=70.24 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
..++|+++.++.+...+... ..|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 56899999999888887653 258999999999999999999843
No 80
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.58 E-value=0.00059 Score=71.50 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=86.4
Q ss_pred CCCCccccchhhHHHHHHHhhCC----C---CCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGD----D---LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~----~---~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
+.-.+++|.+..+++|.+++... . .-+-.....|.|+|++|+||||||+.++... ... .+.++...
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l--~~~---~i~v~~~~-- 273 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGPE-- 273 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT--TCE---EEEEEHHH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCc---EEEEEchH--
Confidence 34467999999999888877530 0 0011234578999999999999999998842 221 23333211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC-----------hHHHhccccccCCC--CCCc
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-----------YDVRANLCKPFKAG--LPGS 154 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~~--~~~~ 154 (425)
+...........+...+.......+.++++|+++... ......+...+... ..+.
T Consensus 274 ------------l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 ------------IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ------------HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred ------------hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 0101111111222233333334567899999983210 01112222222211 1344
Q ss_pred EEEEecCCh-hhhhccCC---CCceeecCCCChhhHHHHHHHhh
Q 042290 155 KIIVTTRNE-GVSSMVTT---PGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 155 ~ilvTtR~~-~v~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
.+|.||... .+...+.. ....+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 566666543 22222221 22457788888888888887765
No 81
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.56 E-value=0.00042 Score=60.35 Aligned_cols=84 Identities=17% Similarity=0.088 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh-----------c--CCCCCCCHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD-----------A--GSVDVNDLN 110 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-----------~--~~~~~~~~~ 110 (425)
...++.|.|++|+|||||+..++. . .-..++|++.....+...+.. +.... . ......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345899999999999999999987 1 224678888766555544432 32222 1 111222223
Q ss_pred HHHHHHHHHcCCceEEEEEeCCC
Q 042290 111 LLQLQLENQLKNKKFLLVLDDMW 133 (425)
Q Consensus 111 ~~~~~l~~~l~~k~~LLVlDdv~ 133 (425)
.....++..+..++-+||||.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34455555554457799999984
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.56 E-value=6.8e-05 Score=79.37 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=74.2
Q ss_pred ccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 19 EVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
.++|.+..++.+...+.....+ .+.....+.|+|++|+|||++|+.+++... ..-...+.++++...... ....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~-~~s~ 635 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKH-AVSR 635 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSG-GGGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchh-HHHH
Confidence 4799999888888877543210 112346899999999999999999987431 111223445544332210 0000
Q ss_pred HHHHhcCCC---CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecC
Q 042290 96 ILQADAGSV---DVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTR 161 (425)
Q Consensus 96 il~~l~~~~---~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR 161 (425)
+ ++... .......+...+.. ....+|+||++.....+....|+..+..+. .++.||+||.
T Consensus 636 l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 636 L---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp C-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred H---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 0 11000 00111122223332 334699999997777777777776665431 2445777776
Q ss_pred C
Q 042290 162 N 162 (425)
Q Consensus 162 ~ 162 (425)
.
T Consensus 710 ~ 710 (854)
T 1qvr_A 710 L 710 (854)
T ss_dssp T
T ss_pred c
Confidence 4
No 83
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.52 E-value=0.00052 Score=67.52 Aligned_cols=180 Identities=15% Similarity=0.108 Sum_probs=93.3
Q ss_pred CCCCCccccchhhHHHHHHHhh---CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 14 SVNEKEVYGREKDKEAIVGLLL---GDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
.+.-.+++|.+..+.++.+... .... -+-.-.+-+.|+|++|+|||+||+.++.... ...+.++.+.-.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~ 101 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFV 101 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHH
Confidence 3445679999987766655442 2110 0001122389999999999999999988432 223444433211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcC----CceEEEEEeCCCCCC----------h----HHHhccccccCC
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLK----NKKFLLVLDDMWSEN----------Y----DVRANLCKPFKA 149 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~----~k~~LLVlDdv~~~~----------~----~~~~~l~~~l~~ 149 (425)
. . ........+...+. ..+.++++|+++... . .....++..+..
T Consensus 102 ~--------------~----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 102 E--------------M----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp S--------------S----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred H--------------h----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 0 00011112222222 245899999994210 1 122333333332
Q ss_pred C--CCCcEEEEecCChhhhh-ccC---CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh
Q 042290 150 G--LPGSKIIVTTRNEGVSS-MVT---TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP 221 (425)
Q Consensus 150 ~--~~~~~ilvTtR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 221 (425)
. .....++.||....... .+. .....+.+...+.++-.+++..++.... ..... ....|+..+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv----~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDV----DLALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSS----TTHHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHH----HHHHHHHhcCCCC
Confidence 2 23345666666554321 111 1235788988898888888876653211 11111 1345777888875
No 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.50 E-value=0.001 Score=59.42 Aligned_cols=182 Identities=15% Similarity=0.073 Sum_probs=87.7
Q ss_pred CCCccccchhhHHHHHHHhhCCCC------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDL------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
.-.+++|.+..+.++.+....-.. -+-.-.+-+.|+|++|+|||||++.++.... ...+.++..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~----- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS----- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH-----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH-----
Confidence 345689988776666554321100 0000112289999999999999999988432 223333311
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------Ch---HHHhccccccCCCC--CC
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NY---DVRANLCKPFKAGL--PG 153 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~---~~~~~l~~~l~~~~--~~ 153 (425)
.+ .... .......+...++..-...+.++++|+++.. .. .....+...+..+. ..
T Consensus 84 -~~----~~~~----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 84 -DF----VEMF----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp -HH----HHSC----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred -HH----HHHH----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 1100 0000111222233332345789999998310 00 11122333333222 22
Q ss_pred cEEEEecCChhhh-hccC---CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh
Q 042290 154 SKIIVTTRNEGVS-SMVT---TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP 221 (425)
Q Consensus 154 ~~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 221 (425)
..++.||...... .... .....+.+...+.++-.+++........ .....+ ...|++.+.|+-
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC-CCcccC----HHHHHHHcCCCC
Confidence 3444555544322 1111 1235788888888888888876542211 111111 344677777653
No 85
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.48 E-value=0.0024 Score=57.92 Aligned_cols=184 Identities=16% Similarity=0.078 Sum_probs=90.0
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCC------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDL------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
...-.+++|.+..++++.+....-.. -+-.-.+-+.|+|++|+|||||++.++.... ...+.+...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~--- 107 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS--- 107 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH---
Confidence 34446789998877666554422100 0000112289999999999999999988432 223333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------C---hHHHhccccccCCCC--
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------N---YDVRANLCKPFKAGL-- 151 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~---~~~~~~l~~~l~~~~-- 151 (425)
.+ .... .......+...++..-...+.++++|+++.. . ......+...+..+.
T Consensus 108 ---~~----~~~~----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 ---DF----VEMF----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp ---HH----HHST----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred ---HH----HHHH----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11 1100 0000111222233332345689999998310 0 011122333333222
Q ss_pred CCcEEEEecCChhhhh-cc-C--CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh
Q 042290 152 PGSKIIVTTRNEGVSS-MV-T--TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP 221 (425)
Q Consensus 152 ~~~~ilvTtR~~~v~~-~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 221 (425)
....++.||....+.. .. . .....+.+...+.++-.+++...+... ...... ....++..+.|+.
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTC----CHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCccc----CHHHHHHHcCCCC
Confidence 2234444555433211 11 1 123678888888888888887665321 111111 1345777777754
No 86
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.46 E-value=0.0017 Score=60.80 Aligned_cols=159 Identities=10% Similarity=-0.073 Sum_probs=100.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HcCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLEN-QLKN 122 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~-~l~~ 122 (425)
-.++..++|+.|.||++.+..+.+... ...|+....+.+....+..+ +.+.+.. -+-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~--------------------l~~~~~~~plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNA--------------------IFSLCQAMSLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHH--------------------HHHHHHHHHHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHH--------------------HHHHhcCcCCcc
Confidence 346899999999999999999877432 22343222222333333333 2222221 1335
Q ss_pred ceEEEEEeCCCC-CChHHHhccccccCCCCCCcEEEEecCC-------hhhhhccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 123 KKFLLVLDDMWS-ENYDVRANLCKPFKAGLPGSKIIVTTRN-------EGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 123 k~~LLVlDdv~~-~~~~~~~~l~~~l~~~~~~~~ilvTtR~-------~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
++-++|+|+++. .....++.+...+....+++.+|+++-. ..+...+......++..+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 567889999976 5556777788777766667777766533 12333334444789999999999998888776
Q ss_pred cCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 195 LRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
....- .-.++.+..|++.++|....+...
T Consensus 156 ~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 33211 112367888999999988877653
No 87
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.40 E-value=0.00092 Score=63.59 Aligned_cols=51 Identities=25% Similarity=0.242 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHhh----CCCC--------------------CCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 18 KEVYGREKDKEAIVGLLL----GDDL--------------------NSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~----~~~~--------------------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++|.+..++.|...+. .... ........+.|+|++|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 458999998888887762 0000 00112346899999999999999999884
No 88
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.33 E-value=6.9e-05 Score=68.79 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=44.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYV--SEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 122 (425)
.+++.|+|++|+|||+||.+++.. . -..++|++. .+..+. ...+.+...+.+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh
Confidence 367889999999999999999874 1 112456666 222110 013455555555555555
Q ss_pred ceEEEEEeCCC
Q 042290 123 KKFLLVLDDMW 133 (425)
Q Consensus 123 k~~LLVlDdv~ 133 (425)
.+ +||||++.
T Consensus 183 ~~-LLVIDsI~ 192 (331)
T 2vhj_A 183 HR-VIVIDSLK 192 (331)
T ss_dssp CS-EEEEECCT
T ss_pred CC-EEEEeccc
Confidence 55 99999994
No 89
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.20 E-value=9.5e-05 Score=64.71 Aligned_cols=112 Identities=13% Similarity=-0.061 Sum_probs=61.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS---VDVNDLNLLQLQLENQL 120 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---~~~~~~~~~~~~l~~~l 120 (425)
...++.|+|+.|+||||++..++.... .+-..++.+...... . ....++..++.. .......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 447899999999999999998887432 222234444322211 1 112233333311 11123345555555544
Q ss_pred CCc-eEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 121 KNK-KFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 121 ~~k-~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
.+. .-+||+|.+.....+..+.+.. +.+ .+..||+|.+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 433 4599999995443344443322 222 267899999854
No 90
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.17 E-value=0.0033 Score=56.88 Aligned_cols=156 Identities=13% Similarity=0.043 Sum_probs=78.8
Q ss_pred CCccccchhhHHHHHHHhhCCCC--------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDL--------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~--------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
=.++.|-++.+++|.+.+..+-. +-....+ +.|+|++|+||||||+.++..... ..+.+...+-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 35678888888777765421100 0011223 899999999999999999884321 244444322111
Q ss_pred --HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh-----------HHHhccccccCCC--CCC
Q 042290 89 --AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY-----------DVRANLCKPFKAG--LPG 153 (425)
Q Consensus 89 --~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~-----------~~~~~l~~~l~~~--~~~ 153 (425)
.... ...+...+...-...+.++++|++..... .....+...+..+ ...
T Consensus 83 ~~~~~~----------------~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 83 MYVGES----------------ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp STTHHH----------------HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hhhhHH----------------HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 0000 01111112221134578999999953110 0111222222222 123
Q ss_pred cEEEEecCChhhh-hcc---CCCCceeecCCCChhhHHHHHHHhh
Q 042290 154 SKIIVTTRNEGVS-SMV---TTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 154 ~~ilvTtR~~~v~-~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
.-++.+|....+. ... +.....+.++..+.++-.++|....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 3455555554332 111 1223678888888888888887765
No 91
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.00 E-value=0.0012 Score=62.02 Aligned_cols=96 Identities=19% Similarity=0.093 Sum_probs=59.9
Q ss_pred HHHHHHHhh-CCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC--
Q 042290 27 KEAIVGLLL-GDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS-- 103 (425)
Q Consensus 27 ~~~l~~~L~-~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-- 103 (425)
...|...|. .. =..-.++.|.|++|+|||||+.+++.... ..-..++|++....++.. .++.++..
T Consensus 46 ~~~LD~~Lg~GG----i~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~ 114 (356)
T 3hr8_A 46 SLAIDIATGVGG----YPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLK 114 (356)
T ss_dssp CHHHHHHTSSSS----EETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGG
T ss_pred CHHHHHHhccCC----ccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchh
Confidence 345656663 11 12457999999999999999999987432 222347888877666654 33444411
Q ss_pred ----CCCCCHHHHHHHHHHHcC-CceEEEEEeCCC
Q 042290 104 ----VDVNDLNLLQLQLENQLK-NKKFLLVLDDMW 133 (425)
Q Consensus 104 ----~~~~~~~~~~~~l~~~l~-~k~~LLVlDdv~ 133 (425)
....+.++....+...+. .+.-++|+|.+.
T Consensus 115 ~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 115 SLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp GCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 123455666665555443 455689999984
No 92
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.97 E-value=0.0033 Score=58.92 Aligned_cols=50 Identities=12% Similarity=0.065 Sum_probs=36.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccc----CCCeEEEEEeCCCCCHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKK----YFSFRAWAYVSEDFDAVGIT 93 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~ 93 (425)
...++.|.|++|+|||+||.+++....... .-..++|++....++...+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~ 174 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR 174 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH
Confidence 457999999999999999999877422211 23468899888777765544
No 93
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.92 E-value=0.0037 Score=57.17 Aligned_cols=83 Identities=10% Similarity=0.073 Sum_probs=53.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHH-HHHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------VDVNDLNLL-QLQLEN 118 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~-~~~l~~ 118 (425)
.++.|.|++|+|||||+.+++........-..++|++....++.. .++.++-. ....+.++. ...+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999987743211113468899887777653 25555521 123455555 444333
Q ss_pred H--c-CCceEEEEEeCCC
Q 042290 119 Q--L-KNKKFLLVLDDMW 133 (425)
Q Consensus 119 ~--l-~~k~~LLVlDdv~ 133 (425)
. + .++.-|+|+|-+.
T Consensus 104 l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHTCCTTCCEEEEEECST
T ss_pred HHHhhccCceEEEEeccc
Confidence 2 2 4567899999983
No 94
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.88 E-value=0.0011 Score=57.15 Aligned_cols=44 Identities=25% Similarity=0.267 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 22 GREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 22 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|++.++.|.+.+..... ....+|+|.|++|+|||||++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 366678888888875431 35679999999999999999998763
No 95
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.87 E-value=0.0034 Score=55.39 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=34.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccc----CCCeEEEEEeCCCCCHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKK----YFSFRAWAYVSEDFDAVGI 92 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~ 92 (425)
.-.++.|.|++|+|||||+..++....... .-..++|++....+....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 346899999999999999999887321111 1356888887765554433
No 96
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.73 E-value=0.0039 Score=58.82 Aligned_cols=83 Identities=19% Similarity=0.097 Sum_probs=55.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------VDVNDLNLLQLQLE 117 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~~~l~ 117 (425)
...++.|.|++|+|||+||.+++.... ..-..++|++....++.. .+..++.. ....+.+++.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 345899999999999999999877432 222468899988776653 23344311 12345667766676
Q ss_pred HHcC-CceEEEEEeCCC
Q 042290 118 NQLK-NKKFLLVLDDMW 133 (425)
Q Consensus 118 ~~l~-~k~~LLVlDdv~ 133 (425)
.... ...-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 6654 345699999983
No 97
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.69 E-value=0.0017 Score=56.90 Aligned_cols=113 Identities=15% Similarity=0.006 Sum_probs=59.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC---------------------
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSV--------------------- 104 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------------------- 104 (425)
.++.|.|++|+|||||+..++..... .-..+.|+.... ....+...+. .++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 58999999999999999999863321 122466665433 3444433332 222100
Q ss_pred ---CCCCHHHHHHHHHHHc---CCceEEEEEeCCCC---CChHHHhccccccCC--CCCCcEEEEecCCh
Q 042290 105 ---DVNDLNLLQLQLENQL---KNKKFLLVLDDMWS---ENYDVRANLCKPFKA--GLPGSKIIVTTRNE 163 (425)
Q Consensus 105 ---~~~~~~~~~~~l~~~l---~~k~~LLVlDdv~~---~~~~~~~~l~~~l~~--~~~~~~ilvTtR~~ 163 (425)
...+..++...+...+ ..+..+||+|.... .+......+...+.. ...+..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 1114455555544433 22234999999842 122222333322221 12467888888765
No 98
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.66 E-value=0.0037 Score=58.09 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=38.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKK----YFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
...++.|.|++|+|||+||.+++....... .-..++|++....++...+. +++..++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 346899999999999999999876422111 02468899888777666554 3344443
No 99
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.65 E-value=0.003 Score=59.28 Aligned_cols=83 Identities=16% Similarity=0.065 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------VDVNDLNLLQLQLE 117 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~~~l~ 117 (425)
.-.++.|.|++|+||||||.+++.... ..-..++|++....++.. .+..++.. ....+.++..+.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 446899999999999999999886332 222457899887766643 23344411 12334566666555
Q ss_pred HHcC-CceEEEEEeCCC
Q 042290 118 NQLK-NKKFLLVLDDMW 133 (425)
Q Consensus 118 ~~l~-~k~~LLVlDdv~ 133 (425)
.... .+.-+||+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5543 346699999983
No 100
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.61 E-value=0.0036 Score=58.06 Aligned_cols=88 Identities=16% Similarity=0.224 Sum_probs=53.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccc---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhcCC------
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKK---------YF-----SFRAWAYVSEDFDAVGITKVILQADAGS------ 103 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~il~~l~~~------ 103 (425)
...++.|.|++|+|||+||.+++....... .. ..++|++....++...+.. ++..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999999876321111 11 4678998887776665543 33444311
Q ss_pred ----CCCCCHHH---HHHHHHHHcC--CceEEEEEeCC
Q 042290 104 ----VDVNDLNL---LQLQLENQLK--NKKFLLVLDDM 132 (425)
Q Consensus 104 ----~~~~~~~~---~~~~l~~~l~--~k~~LLVlDdv 132 (425)
....+.++ +...+...+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 01122232 3333444443 35568888888
No 101
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.59 E-value=0.0037 Score=64.80 Aligned_cols=162 Identities=13% Similarity=0.019 Sum_probs=84.1
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.+.-.++.|-++..++|.+.+.-+-. .+...++-|.++|++|+|||.||+++++... .-++.++
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~-------~~f~~v~-- 543 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIK-- 543 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT-------CEEEECC--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC-------CceEEec--
Confidence 34445678888888888776643311 0123445688999999999999999999532 1233332
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC--------------hHHHhccccccCCC--
Q 042290 87 FDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN--------------YDVRANLCKPFKAG-- 150 (425)
Q Consensus 87 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~--------------~~~~~~l~~~l~~~-- 150 (425)
..+ +...........+...+...-...+++|+||+++.-. ......++..+...
T Consensus 544 --~~~--------l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 544 --GPE--------LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp --HHH--------HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred --cch--------hhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 111 1122233444455555555556789999999984210 01122333333322
Q ss_pred CCCcEEEEecC-Chhhhhcc---CCCCceeecCCCChhhHHHHHHHhh
Q 042290 151 LPGSKIIVTTR-NEGVSSMV---TTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 151 ~~~~~ilvTtR-~~~v~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
..+.-||.||. ...+...+ +.....+.+..-+.++-.++|..+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 22334443443 33222211 1223667776666666667766554
No 102
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.49 E-value=0.0018 Score=61.32 Aligned_cols=50 Identities=30% Similarity=0.301 Sum_probs=36.5
Q ss_pred ccccchhhHHHHHHHhhCC-------C--CCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 19 EVYGREKDKEAIVGLLLGD-------D--LNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.++|.+..++.|...+... . .........+.|+|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999888877210 0 000123456899999999999999999884
No 103
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.48 E-value=0.00071 Score=57.47 Aligned_cols=114 Identities=14% Similarity=0.013 Sum_probs=59.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC---CCCHHHHHHHHHHHhc----CC---CCCCC-------
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE---DFDAVGITKVILQADA----GS---VDVND------- 108 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l~----~~---~~~~~------- 108 (425)
..|.|++..|.||||+|...+-. ..++=-.+.++.... ......++..+. +. .. ....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 56778888889999999887763 333323355554332 222333433331 11 00 11111
Q ss_pred HHHHHHHHHHHcCCce-EEEEEeCCCC---CChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 109 LNLLQLQLENQLKNKK-FLLVLDDMWS---ENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 109 ~~~~~~~l~~~l~~k~-~LLVlDdv~~---~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
........++.+.+.+ =|||||++-. -..-..+.+...+........||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1112233445554444 4999999811 01112234444555555678999999985
No 104
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.42 E-value=0.0039 Score=58.56 Aligned_cols=82 Identities=15% Similarity=0.049 Sum_probs=52.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------VDVNDLNLLQLQLE 117 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~~~l~ 117 (425)
..+++.|.|.+|+||||||.+++.... ..-..++|++....++... +..++.. ....+.+++.+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999999887432 2223588998877766432 3334311 11234555555554
Q ss_pred HHc-CCceEEEEEeCC
Q 042290 118 NQL-KNKKFLLVLDDM 132 (425)
Q Consensus 118 ~~l-~~k~~LLVlDdv 132 (425)
... ..+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 433 234558999998
No 105
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.41 E-value=0.0076 Score=55.12 Aligned_cols=86 Identities=17% Similarity=0.020 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-FDAVGITKVILQADAGS-VDVNDLNLLQLQLENQLK 121 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~-~~~~~~~~~~~~l~~~l~ 121 (425)
...+++|+|++|+||||++..++........ ..+..+..... ....+.+.......+-. ....+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 4579999999999999999998874332111 23445543321 22322333333333211 112234444444443 3
Q ss_pred CceEEEEEeCC
Q 042290 122 NKKFLLVLDDM 132 (425)
Q Consensus 122 ~k~~LLVlDdv 132 (425)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457889954
No 106
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.32 E-value=0.0012 Score=61.85 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=34.2
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+-..++|.+..++.+...+.... ...+.|+|++|+|||+||+.+++.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 33568999886666554443322 123899999999999999999874
No 107
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.31 E-value=0.0029 Score=54.62 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=29.0
Q ss_pred hHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 26 DKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 26 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-+++|.+.+... .+...+|+|.|++|+|||||++.+...
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345565655433 135579999999999999999998774
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.31 E-value=0.0017 Score=54.45 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999873
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.27 E-value=0.0025 Score=53.99 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999874
No 110
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.26 E-value=0.002 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 111
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.24 E-value=0.0039 Score=56.83 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999999987
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.21 E-value=0.0019 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+|+|.|++|+||||+++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999873
No 113
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.21 E-value=0.006 Score=57.30 Aligned_cols=42 Identities=17% Similarity=-0.047 Sum_probs=28.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCC-eEEEEEeCCCC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFS-FRAWAYVSEDF 87 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~ 87 (425)
-..++|+|++|+|||||++.+.+..... +-+ .++++-+++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~-~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYN-HPDCVLMVLLIDERP 216 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHH-CTTSEEEEEEESSCH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhc-CCCeeEEEEEecCCh
Confidence 3578999999999999999988743221 212 24456667654
No 114
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.17 E-value=0.0023 Score=53.20 Aligned_cols=20 Identities=55% Similarity=0.806 Sum_probs=18.7
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLV 65 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~ 65 (425)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999
No 115
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.13 E-value=0.015 Score=53.40 Aligned_cols=104 Identities=20% Similarity=0.089 Sum_probs=54.8
Q ss_pred hHHHHHHHhhCCCC--CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH--HHHHHHHHHhc
Q 042290 26 DKEAIVGLLLGDDL--NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV--GITKVILQADA 101 (425)
Q Consensus 26 e~~~l~~~L~~~~~--~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~il~~l~ 101 (425)
-.++|.+.|..... -......+++|+|++|+||||++..++..... .-..+.++... .+... +-+...+...+
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D-~~r~~a~eqL~~~~~~~g 159 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAAD-TFRAAAIEQLKIWGERVG 159 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccc-cccHHHHHHHHHHHHHcC
Confidence 34556666643221 01245689999999999999999998874332 21234454433 33322 11223333333
Q ss_pred ----CCCCCCCHHHH-HHHHHHHcCCceEEEEEeCC
Q 042290 102 ----GSVDVNDLNLL-QLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 102 ----~~~~~~~~~~~-~~~l~~~l~~k~~LLVlDdv 132 (425)
......+...+ ...+...+....-++|+|-.
T Consensus 160 l~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 160 ATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp CEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 11122233322 33454444445558888976
No 116
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.11 E-value=0.0056 Score=56.53 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=31.8
Q ss_pred ccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 042290 21 YGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 21 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+|-...+..+...+.... ..+.+.+|+|.|+.|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444445555555554443 235678999999999999999998866
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.11 E-value=0.0034 Score=53.24 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|.|.|++|+||||+++.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 118
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.10 E-value=0.0048 Score=55.06 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=28.8
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++...+..... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444444443322 2345688999999999999999999873
No 119
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.10 E-value=0.0032 Score=57.42 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=44.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccc-CCCeEEEEEeCCCCCHHHHHHHHHHH------hc--CCCCCCCHHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKK-YFSFRAWAYVSEDFDAVGITKVILQA------DA--GSVDVNDLNLLQ 113 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~il~~------l~--~~~~~~~~~~~~ 113 (425)
++..+|+|.|++|+||||||+.+........ ....+..|+...-.-.......+... +. ......+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998877433211 12234444544332222333333221 11 123445566666
Q ss_pred HHHHHHcCC
Q 042290 114 LQLENQLKN 122 (425)
Q Consensus 114 ~~l~~~l~~ 122 (425)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666655444
No 120
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.09 E-value=0.025 Score=52.55 Aligned_cols=53 Identities=17% Similarity=-0.029 Sum_probs=37.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD 100 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 100 (425)
...++.|.|.+|+||||||..++..... .-..++|++. ..+...+...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 3468999999999999999999875432 2235677765 345666766665544
No 121
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.08 E-value=0.019 Score=54.67 Aligned_cols=57 Identities=16% Similarity=0.047 Sum_probs=36.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVK----KYFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
.-.++.|.|++|+|||||+..++-..... ..-..++|++....+....+ ..+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 34689999999999999999765211111 12346888887766655443 33444443
No 122
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.07 E-value=0.0036 Score=53.65 Aligned_cols=26 Identities=38% Similarity=0.397 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...+|+|.|++|+|||||++.+....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998743
No 123
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.06 E-value=0.039 Score=53.21 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeC
Q 042290 27 KEAIVGLLLGDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVS 84 (425)
Q Consensus 27 ~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 84 (425)
.++|.++|..... ....++++|.++|.+|+||||++..++.....+.. ..+..+++.
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D 138 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSAD 138 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECC
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecC
Confidence 4566666653221 01245789999999999999999998874432212 234555544
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.06 E-value=0.0026 Score=54.53 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|+|+|++|+||||+++.++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 125
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.05 E-value=0.0032 Score=53.03 Aligned_cols=23 Identities=13% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++++|+|++|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998763
No 126
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.05 E-value=0.046 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
++.+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887643
No 127
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.03 E-value=0.012 Score=55.29 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=31.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCC----CeEEEEEeCCCCCH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYF----SFRAWAYVSEDFDA 89 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~ 89 (425)
.-.++.|+|++|+|||||+..++......... ..++|++....+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~ 179 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 179 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCH
Confidence 45799999999999999999987632111111 24588887655443
No 128
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.03 E-value=0.034 Score=51.29 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=38.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD 100 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 100 (425)
.-.++.|.|.+|+||||||.+++.....++ ..++|++.- .+...+...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 446899999999999999999886433222 567787755 45666666666543
No 129
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.95 E-value=0.0035 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.+|+|.|++|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998843
No 130
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.95 E-value=0.0079 Score=58.77 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.+.|.|.+|+|||+++..++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999988754
No 131
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.93 E-value=0.0031 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+.|.|+|++|+||||+|+.+++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 132
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.90 E-value=0.026 Score=54.23 Aligned_cols=27 Identities=30% Similarity=0.202 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
....+|.++|++|+||||++..++...
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999988744
No 133
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.90 E-value=0.0039 Score=53.83 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+++|+|++|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999874
No 134
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.89 E-value=0.0029 Score=54.25 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 135
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.88 E-value=0.0053 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
...+++|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999876
No 136
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.88 E-value=0.0032 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+|+|+|++|+|||||++.++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 137
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.88 E-value=0.0057 Score=52.24 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=27.5
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..|..++... ++...+.|+|++|+|||++|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55566666432 22346899999999999999998884
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.83 E-value=0.0041 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+++|.|++|+|||||++.++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999873
No 139
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.82 E-value=0.0051 Score=53.07 Aligned_cols=25 Identities=44% Similarity=0.343 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|+|.|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998773
No 140
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.81 E-value=0.0021 Score=54.41 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999876
No 141
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.78 E-value=0.0036 Score=52.56 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.++|.|+|++|+||||+++.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999999873
No 142
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.76 E-value=0.022 Score=55.02 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=32.8
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHH
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVIL 97 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il 97 (425)
.++|+|.+|+|||||+..++...... .-..++++.+++..+ ..+++..+.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 58899999999999999988743322 223456666666543 334444443
No 143
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.76 E-value=0.0047 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|+|.|++|+||||+|+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998773
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.76 E-value=0.0054 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
....+|+|.|++|+||||+++.+++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999987
No 145
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.75 E-value=0.0053 Score=52.44 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+..+|+|+|+.|+||||+++.+.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 146
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.75 E-value=0.0049 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|.|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 147
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.75 E-value=0.0072 Score=51.98 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....+|+|+|++|+||||+++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999874
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.74 E-value=0.0043 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+|+|.|++|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 149
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.74 E-value=0.0047 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|+|.|++|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 150
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.73 E-value=0.0022 Score=60.26 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=60.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
.+++|+|+.|+|||||.+.+..... ......+. .+.++.... .......+.......+.......+...|...+=
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~-t~ed~~e~~--~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHIL-TIEDPIEFV--HESKKCLVNQREVHRDTLGFSEALRSALREDPD 198 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEE-EEESSCCSC--CCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEE-EccCcHHhh--hhccccceeeeeeccccCCHHHHHHHHhhhCcC
Confidence 5999999999999999998876322 11112221 221211100 000000000000011112344578888888888
Q ss_pred EEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhh
Q 042290 126 LLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVS 166 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~ 166 (425)
+|++|... +.+.+..+.... ..|..+|+|+......
T Consensus 199 villDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 199 IILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred EEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999994 455555544432 2356688888876544
No 151
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.73 E-value=0.0035 Score=53.89 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|+|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999874
No 152
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.72 E-value=0.0047 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999874
No 153
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.72 E-value=0.0053 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+.++|.|.|++|+||+|.|+.+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999874
No 154
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.70 E-value=0.0048 Score=52.06 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
....|+|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 155
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.68 E-value=0.0056 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
..+++|+|++|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997543
No 156
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.65 E-value=0.0057 Score=52.46 Aligned_cols=24 Identities=33% Similarity=0.575 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+++|+|++|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999874
No 157
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.64 E-value=0.0071 Score=51.09 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|+|.|++|+||||+|+.+.+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 158
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.63 E-value=0.0062 Score=51.54 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|.|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 159
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.62 E-value=0.0059 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|+|.|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999999873
No 160
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.61 E-value=0.0058 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 161
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.0061 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.500 Sum_probs=21.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.+|+|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998843
No 162
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.60 E-value=0.0045 Score=52.39 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++++|.|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999863
No 163
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.59 E-value=0.0062 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
...|+|.|++|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 164
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.56 E-value=0.0055 Score=52.25 Aligned_cols=25 Identities=16% Similarity=0.526 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++++|+|++|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4468999999999999999998863
No 165
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.56 E-value=0.0052 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|+|.|++|+||||+++.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 166
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.56 E-value=0.0064 Score=51.09 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999987643
No 167
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.54 E-value=0.019 Score=54.17 Aligned_cols=132 Identities=19% Similarity=0.148 Sum_probs=67.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|....+.++...+..... ....|.|.|.+|+||+++|+.+.+..... ...+-+++..-.. ..+...+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~s~r~---~~fv~vnc~~~~~-~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRYSGRK---GAFVDLNCASIPQ-ELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHHHCCC---SCEEEEESSSSCT-TTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHhcccc---CCcEEEEcccCCh-HHHHHHhc
Confidence 4688888777766665533221 11247799999999999999887632211 1233344443221 11111111
Q ss_pred HHhcCCCC--CCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC------C-----CCcEEEEecCCh
Q 042290 98 QADAGSVD--VNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG------L-----PGSKIIVTTRNE 163 (425)
Q Consensus 98 ~~l~~~~~--~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~------~-----~~~~ilvTtR~~ 163 (425)
..-...-. ..... ..+.. .+. -.|+||++..........|+..+..+ + ...++|.+|...
T Consensus 201 g~~~g~~tga~~~~~---g~~~~--a~~-gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~ 273 (368)
T 3dzd_A 201 GHEKGAFTGALTRKK---GKLEL--ADQ-GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN 273 (368)
T ss_dssp EECSCSSSSCCCCEE---CHHHH--TTT-SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC
T ss_pred CccccccCCcccccC---ChHhh--cCC-CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC
Confidence 11001100 00100 01111 122 25999999887777777776655432 1 135777776643
No 168
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.53 E-value=0.0079 Score=50.73 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...+|.|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998843
No 169
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.53 E-value=0.008 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....|+|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 170
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.52 E-value=0.0058 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|.|++|+||||+++.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999874
No 171
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.50 E-value=0.0051 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+.++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 172
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.49 E-value=0.0043 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|+|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 173
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.48 E-value=0.006 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 174
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.48 E-value=0.0057 Score=51.07 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|.|++|+||||+|+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 175
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.48 E-value=0.0043 Score=52.12 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=17.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 176
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.45 E-value=0.007 Score=52.23 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|+|.|++|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 177
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.45 E-value=0.0077 Score=50.45 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|+|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999874
No 178
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.43 E-value=0.0065 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...|+|.|++|+||||+|+.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 179
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.43 E-value=0.0074 Score=53.76 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+..+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998773
No 180
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.43 E-value=0.0071 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
..+++|.|++|+|||||++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 181
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.42 E-value=0.0069 Score=51.89 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 042290 47 VIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999887
No 182
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.40 E-value=0.0067 Score=52.90 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999977
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.39 E-value=0.0085 Score=51.45 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 184
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.39 E-value=0.0084 Score=55.28 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=29.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE 85 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 85 (425)
.+.++|+|.|-|||||||.+..++..... .=..+.-+.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~--~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 46799999999999999999887664322 222366666653
No 185
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.38 E-value=0.071 Score=52.59 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=37.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD 100 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 100 (425)
.-.++.|.|.+|+|||+||.+++.+.... +-..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 44689999999999999999988753322 123577777543 4566666665443
No 186
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.38 E-value=0.0053 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 187
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.37 E-value=0.037 Score=52.65 Aligned_cols=134 Identities=16% Similarity=0.093 Sum_probs=68.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|....+.++.+.+..-.. ... .|.|.|.+|+|||++|+.+.... ...-...+-++++.- ....+...+.
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~---~~~-~vli~Ge~GtGK~~lAr~ih~~s--~r~~~~fv~v~~~~~-~~~~~~~elf 209 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC---AEC-PVLITGESGVGKEVVARLIHKLS--DRSKEPFVALNVASI-PRDIFEAELF 209 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT---CCS-CEEEECSTTSSHHHHHHHHHHHS--TTTTSCEEEEETTTS-CHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcC---CCC-CeEEecCCCcCHHHHHHHHHHhc--CCCCCCeEEEecCCC-CHHHHHHHhc
Confidence 3578888778877776654332 223 35899999999999999887631 111222334444432 2222222222
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC------C-----CCcEEEEecCC
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG------L-----PGSKIIVTTRN 162 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~------~-----~~~~ilvTtR~ 162 (425)
..-......... .....+... + .-.|+||++..........++..+..+ + ...+||.||..
T Consensus 210 g~~~g~~tga~~-~~~g~~~~a--~-~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 210 GYEKGAFTGAVS-SKEGFFELA--D-GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp CBCTTSSTTCCS-CBCCHHHHT--T-TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCCccc-ccCCceeeC--C-CcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 111011000000 000011111 1 236789999777766666666554321 1 24578877765
No 188
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.36 E-value=0.0074 Score=51.97 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|+|.|++|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 189
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.33 E-value=0.0074 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
..+++.|.|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998743
No 190
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.32 E-value=0.05 Score=50.37 Aligned_cols=26 Identities=35% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+...+++|+|+.|+||||++..++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998874
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.30 E-value=0.043 Score=52.66 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...++.|+|++|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999988743
No 192
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.28 E-value=0.012 Score=59.61 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45899999898888887543 368999999999999999998843
No 193
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.27 E-value=0.016 Score=55.93 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=36.5
Q ss_pred CccccchhhHHHHHHHhhCC--------CCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 18 KEVYGREKDKEAIVGLLLGD--------DLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++|.++.++.|...+... ........+-+.++|++|+|||++|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 56899998888887666321 0000113456899999999999999999884
No 194
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.26 E-value=0.015 Score=54.13 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=29.7
Q ss_pred chhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 23 REKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 23 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-+.-.+.+.+.+...-. .+....|.|+|++|+||||+++.++..
T Consensus 4 ~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34445555555532211 234567999999999999999988773
No 195
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.25 E-value=0.0079 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...|+|.|++|+||||+|+.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 196
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.23 E-value=0.01 Score=54.62 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....+|+|.|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 35679999999999999999998773
No 197
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.23 E-value=0.0083 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 198
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.22 E-value=0.011 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998876
No 199
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.22 E-value=0.01 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..+++|+|++|+|||||+..++.-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999998863
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.20 E-value=0.015 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....|+|+|.+|+|||||+..++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999874
No 201
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.20 E-value=0.0086 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|+|.|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 202
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.19 E-value=0.0096 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-.+++|.|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.18 E-value=0.0095 Score=51.86 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+++|+|+.|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998763
No 204
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.18 E-value=0.012 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.+++|.|+.|.|||||++.++.-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998773
No 205
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.17 E-value=0.013 Score=58.70 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=54.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HHc----
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLE-NQL---- 120 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~-~~l---- 120 (425)
+++.|.|.+|+||||++..+.......+ ..+.+...... ....+.+..+.. ......+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~----Aa~~L~e~~~~~--a~Tih~ll~~~~~~~~~~~~ 275 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGK----AARRLGEVTGRT--ASTVHRLLGYGPQGFRHNHL 275 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHH----HHHHHHHHHTSC--EEEHHHHTTEETTEESCSSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHH----HHHHhHhhhccc--HHHHHHHHcCCcchhhhhhc
Confidence 5889999999999999999887433221 23334332211 112222222100 000000000000 000
Q ss_pred -CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 121 -KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 121 -~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
..+.-+||+|.+...+...+..+...++ .+.++|+.--..
T Consensus 276 ~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~ 316 (574)
T 3e1s_A 276 EPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTD 316 (574)
T ss_dssp SCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTT
T ss_pred ccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEeccc
Confidence 0122489999997666777777776655 466777765443
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.15 E-value=0.0096 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
..|+|.|+.|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998843
No 207
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.15 E-value=0.045 Score=49.95 Aligned_cols=86 Identities=17% Similarity=0.027 Sum_probs=46.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQADA----GSVDVNDLNLLQLQLENQ 119 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~----~~~~~~~~~~~~~~l~~~ 119 (425)
..+++++|.+|+||||++..++..... .-..+.++....... ....+.......+ ......+...+.......
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999998874332 222355555432222 2222333333333 111223444443333333
Q ss_pred cC-CceEEEEEeCC
Q 042290 120 LK-NKKFLLVLDDM 132 (425)
Q Consensus 120 l~-~k~~LLVlDdv 132 (425)
+. ..-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 32 22237888875
No 208
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.14 E-value=0.0082 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999877
No 209
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.13 E-value=0.051 Score=49.52 Aligned_cols=86 Identities=13% Similarity=0.029 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHH--HHHHHHHHhc----CCCCCCCHHHHH-HHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVG--ITKVILQADA----GSVDVNDLNLLQ-LQL 116 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~il~~l~----~~~~~~~~~~~~-~~l 116 (425)
...+++|+|.+|+||||++..++..... .-..+.++... ...... .+.......+ ......+..++. ..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999998874332 22234444433 222221 1223333333 111223444443 333
Q ss_pred HHHcCCceEEEEEeCC
Q 042290 117 ENQLKNKKFLLVLDDM 132 (425)
Q Consensus 117 ~~~l~~k~~LLVlDdv 132 (425)
........=++|+|--
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333233447888875
No 210
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.12 E-value=0.018 Score=65.11 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=54.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------VDVNDLNLLQLQLE 117 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~~~l~ 117 (425)
..+.+.|+|++|+|||+||.+++... ..+=..+.|++....++... ++.++.+ ......++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45789999999999999999987742 23334578888777766555 3333311 12334455555555
Q ss_pred HHcC-CceEEEEEeCC
Q 042290 118 NQLK-NKKFLLVLDDM 132 (425)
Q Consensus 118 ~~l~-~k~~LLVlDdv 132 (425)
+..+ .+..+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 4432 45679999998
No 211
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.12 E-value=0.013 Score=53.19 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+...+|+|+|++|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999873
No 212
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.016 Score=48.86 Aligned_cols=26 Identities=35% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.....|+|+|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999874
No 213
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.11 E-value=0.0061 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.5
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987743
No 214
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.10 E-value=0.014 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++|+|+|+.|+|||||+..+++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999984
No 215
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.09 E-value=0.012 Score=50.03 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
....+|+|+|+.|+||||+++.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4668999999999999999999987
No 216
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.07 E-value=0.0099 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 217
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.07 E-value=0.0087 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...|+|.|++|+||||+++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 218
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.06 E-value=0.074 Score=51.34 Aligned_cols=53 Identities=25% Similarity=0.319 Sum_probs=37.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQA 99 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~ 99 (425)
.-++|.|.+|+|||+|+..+++... +.+-+.++++-+++... ..++...+...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4689999999999999999987432 22345677777777654 44555555543
No 219
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.05 E-value=0.01 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999773
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.04 E-value=0.012 Score=50.76 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...+|.|.|++|+||||+++.+....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998743
No 221
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.04 E-value=0.027 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
...+|+|.|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999877
No 222
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.02 E-value=0.0087 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..|+|.|++|+||||+|+.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 223
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.02 E-value=0.14 Score=42.80 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 224
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.02 E-value=0.011 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
++++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999988743
No 225
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.98 E-value=0.012 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
..+|+|.|+.|+||||+++.+++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 226
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.98 E-value=0.011 Score=51.18 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 042290 47 VIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.|+|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 227
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.97 E-value=0.013 Score=50.95 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=30.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccc---c-CCCeEEEEEeCCCCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVK---K-YFSFRAWAYVSEDFD 88 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~ 88 (425)
.-.+++|+|++|+|||||++.++...... . .....+|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 44799999999999999999987522111 1 134577877554433
No 228
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.96 E-value=0.08 Score=51.30 Aligned_cols=54 Identities=17% Similarity=0.066 Sum_probs=37.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD 100 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 100 (425)
...++.|.|.+|+|||+||..++...... .-..++|++.. .+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 34689999999999999999988753322 12357777654 44566666665443
No 229
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.89 E-value=0.014 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 230
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.84 E-value=0.15 Score=49.94 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=27.6
Q ss_pred HHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 28 EAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 28 ~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++|.+++.....+ ...+.++|+|+|.+|+||||++..++..
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555666442211 1245789999999999999999998863
No 231
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.80 E-value=0.015 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.++|+|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999999874
No 232
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.78 E-value=0.019 Score=49.73 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=30.2
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 22 GREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 22 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+.++..+.+...+.. .+.+.|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455556555532 24679999999999999999998874
No 233
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.78 E-value=0.093 Score=49.27 Aligned_cols=52 Identities=17% Similarity=0.083 Sum_probs=33.0
Q ss_pred HHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCC-eEEEEEeCCC
Q 042290 29 AIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFS-FRAWAYVSED 86 (425)
Q Consensus 29 ~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~ 86 (425)
++++.|..-. +-.-+.|.|.+|+|||+|+..+++..... +-+ .++++-+++.
T Consensus 164 raID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCC
T ss_pred hhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccC
Confidence 4556665432 23467999999999999999988843221 222 2345655543
No 234
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.77 E-value=0.014 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-.+++|.|++|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998874
No 235
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.76 E-value=0.027 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++..+|+|+|.+|+|||||+..++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998764
No 236
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.75 E-value=0.016 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+.|.|.|++|+||||||.+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999884
No 237
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.69 E-value=0.018 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.084 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++|+|.|+.|+||||||..+++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999999873
No 238
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.69 E-value=0.011 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=16.0
Q ss_pred EEEEEEecCCchHHHHHHHHh-c
Q 042290 46 SVIPITGMGGLGKTTLAQLVF-N 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~-~ 67 (425)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 239
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.66 E-value=0.13 Score=60.10 Aligned_cols=144 Identities=16% Similarity=0.056 Sum_probs=0.0
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh---------------cCCCCCCCHHHH
Q 042290 48 IPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD---------------AGSVDVNDLNLL 112 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l---------------~~~~~~~~~~~~ 112 (425)
|.++|++|+|||++|+.+.. ...-.....++.+...+...+...+-..+ .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~----~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR----NSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH----SCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHh----cCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred HHHHHHHcCCceEEEEEeCCCCCChH------HHhccccccCCCC------------CCcEEEEecCCh------hhhhc
Q 042290 113 QLQLENQLKNKKFLLVLDDMWSENYD------VRANLCKPFKAGL------------PGSKIIVTTRNE------GVSSM 168 (425)
Q Consensus 113 ~~~l~~~l~~k~~LLVlDdv~~~~~~------~~~~l~~~l~~~~------------~~~~ilvTtR~~------~v~~~ 168 (425)
+++++|++||+.-...+ ..+.++..+..++ .+..+|.++-.. .+...
T Consensus 1335 ---------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1335 ---------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp ---------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred ---------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh
Q ss_pred cCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhh
Q 042290 169 VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRC 217 (425)
Q Consensus 169 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~ 217 (425)
+......+.+...+.++-..+|........ ...++....+..|++.+
T Consensus 1406 llRrf~vi~i~~P~~~~l~~I~~~il~~~l--~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1406 FTRHAAILYLGYPSGKSLSQIYEIYYKAIF--KLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp HHTTEEEEECCCCTTTHHHHHHHHHHHHHT--TSSGGGGGGHHHHHHHH
T ss_pred hhheeeEEEeCCCCHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHH
No 240
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.65 E-value=0.02 Score=50.35 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=28.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE 85 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 85 (425)
-.++.|.|++|+|||||+.+++.... ..-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 35899999999999999988876322 2223577777543
No 241
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.64 E-value=0.084 Score=51.17 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=37.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQ 98 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~ 98 (425)
.-++|.|.+|+|||+|+..+++... +.+-+.++++-+++... ..++...+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 4589999999999999999988422 22346778888887764 4455556554
No 242
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.62 E-value=0.019 Score=52.64 Aligned_cols=26 Identities=38% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....+++|+|+.|+||||+++.++..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998874
No 243
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.60 E-value=0.016 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|+|.|+.|+||||+++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999873
No 244
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.59 E-value=0.03 Score=49.96 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 29 AIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 29 ~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-+..+|.... ++...+.|+|++|+|||.+|..+++.
T Consensus 92 ~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3556664321 23457999999999999999999873
No 245
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.57 E-value=0.016 Score=48.57 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-|+|+|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 246
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.56 E-value=0.023 Score=50.66 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 42 GRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 42 ~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.....++.+.|.||+||||++..++..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 346788999999999999999999864
No 247
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.54 E-value=0.015 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999987643
No 248
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.54 E-value=0.017 Score=55.55 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....+|.|+|++|+||||+|+.++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999999874
No 249
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.54 E-value=0.017 Score=53.54 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999874
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.53 E-value=0.017 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+++.|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998874
No 251
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.52 E-value=0.017 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 252
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.52 E-value=0.016 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|+|.|++|+||||+++.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 253
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.51 E-value=0.12 Score=50.11 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=34.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
...++.|.|.+|+|||||+..++....... -..++|++... +...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 346899999999999999999987543221 22577776543 4455555554
No 254
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.50 E-value=0.02 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.++|+|+|+.|+||||||..+++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.49 E-value=0.018 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999887
No 256
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.49 E-value=0.018 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...|.|.|++|+||||+|+.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 257
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.49 E-value=0.018 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 258
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.49 E-value=0.024 Score=46.57 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.48 E-value=0.018 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999873
No 260
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.48 E-value=0.069 Score=46.79 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=17.4
Q ss_pred EEEEEEecCCchHHHHHHHHh
Q 042290 46 SVIPITGMGGLGKTTLAQLVF 66 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~ 66 (425)
+.+.|.|+.|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 478999999999998766554
No 261
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.47 E-value=0.019 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999887
No 262
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.47 E-value=0.0089 Score=54.50 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=18.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..+|+|.|++|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998773
No 263
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.45 E-value=0.014 Score=58.76 Aligned_cols=51 Identities=29% Similarity=0.302 Sum_probs=33.3
Q ss_pred CccccchhhHHHHHHHhhCCCCC---C--CCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN---S--GRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~---~--~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+.++|.+...+.+...|...... . -.....|.++|++|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 45789888666665544332100 0 000115899999999999999999874
No 264
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.45 E-value=0.017 Score=50.30 Aligned_cols=22 Identities=41% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 265
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.41 E-value=0.018 Score=49.46 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=42.8
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHH----------hcCCCCCCCHHHHHHHH
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQA----------DAGSVDVNDLNLLQLQL 116 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~----------l~~~~~~~~~~~~~~~l 116 (425)
+|.|.|++|+||+|.|+.+++... ...++. .++++..+.. .......-..+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-------~~~ist------GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-------FVHIST------GDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CEEEEH------HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-------CeEEcH------HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 578999999999999999987432 223332 2333322211 11112233344556667
Q ss_pred HHHcCCceEEEEEeCCC
Q 042290 117 ENQLKNKKFLLVLDDMW 133 (425)
Q Consensus 117 ~~~l~~k~~LLVlDdv~ 133 (425)
...+..... +|||++-
T Consensus 69 ~~~l~~~~~-~ilDGfP 84 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFP 84 (206)
T ss_dssp HHHCCSSSC-EEEESCC
T ss_pred HHhhccCCc-eEecCCc
Confidence 777765544 6789983
No 266
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.40 E-value=0.031 Score=46.78 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 267
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.31 E-value=0.015 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..|+|+|++|+||||+++.++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999873
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.29 E-value=0.022 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 269
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.28 E-value=0.023 Score=47.97 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.-.|+|+|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 270
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.22 E-value=0.027 Score=50.37 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=55.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHcCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAG-SVDVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~l~~~l~~ 122 (425)
...+++|+|+.|+|||||++.+..-.. ..+...+++.-.. ... +.......+.. .... +...+...+...+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~-i~~--~~~~~~~~v~q~~~gl-~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDP-IEY--VFKHKKSIVNQREVGE-DTKSFADALRAALRE 97 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESS-CCS--CCCCSSSEEEEEEBTT-TBSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCc-cee--ecCCcceeeeHHHhCC-CHHHHHHHHHHHHhh
Confidence 346999999999999999999876322 1122333332111 000 00000000000 0000 001234455555555
Q ss_pred ceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhh
Q 042290 123 KKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGV 165 (425)
Q Consensus 123 k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v 165 (425)
++=+|++|... +.+....+.... ..|..|++||.....
T Consensus 98 ~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 98 DPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred CCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 66688999984 444443333322 235678888876543
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.18 E-value=0.027 Score=49.77 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998763
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.17 E-value=0.026 Score=52.87 Aligned_cols=26 Identities=38% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....+++|+|+.|+||||++..++..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35689999999999999999998874
No 273
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.16 E-value=0.039 Score=50.54 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=30.2
Q ss_pred HHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 29 AIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 29 ~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
.+...|.... .....++|+|+|-||+||||+|..++...... -..++-++.....
T Consensus 27 ~l~~~l~~~~--~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~~ 81 (307)
T 3end_A 27 SVQVHLDEAD--KITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPKH 81 (307)
T ss_dssp ---------------CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSSC
T ss_pred hhhhhhcccc--ccCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 3444443332 23466889999999999999999887744322 2246666665433
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.16 E-value=0.024 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 275
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.14 E-value=0.023 Score=51.21 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|+|+.|+|||||++.++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999876
No 276
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.12 E-value=0.027 Score=45.59 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+-|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 277
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.11 E-value=0.018 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999988753
No 278
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.10 E-value=0.33 Score=42.46 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=58.7
Q ss_pred chhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 042290 23 REKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAG 102 (425)
Q Consensus 23 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 102 (425)
|+.+.+.+..++.. .-+.|+|+.|.|||.+|..++... . ..++++. . ...+..++.+.+..
T Consensus 95 ~~~Q~~ai~~~~~~---------~~~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P----~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 95 RDYQEKALERWLVD---------KRGCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-P----TLALAEQWKERLGI 155 (237)
T ss_dssp CHHHHHHHHHHTTT---------SEEEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-S----SHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHhC---------CCEEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-C----CHHHHHHHHHHHHh
Confidence 45555555555421 127899999999999998887632 1 2344443 1 11233333333221
Q ss_pred ---C---------CCC-----CCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec
Q 042290 103 ---S---------VDV-----NDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT 160 (425)
Q Consensus 103 ---~---------~~~-----~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt 160 (425)
. ... ...+.+..... .+.++--+||+|+++......+..+...+. ...++++|.
T Consensus 156 ~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 156 FGEEYVGEFSGRIKELKPLTVSTYDSAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp GCGGGEEEESSSCBCCCSEEEEEHHHHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred CCCCeEEEEeCCCCCcCCEEEEeHHHHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 0 000 11223332222 333445699999997655455665554443 233444443
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.07 E-value=0.025 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 280
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.06 E-value=0.064 Score=60.77 Aligned_cols=83 Identities=14% Similarity=0.034 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------VDVNDLNLLQLQLE 117 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~~~l~ 117 (425)
...++.|.|++|+||||||.+++.... ..-..++|++.....+... ++.++.. .+..+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 456999999999999999999987433 2224688888777766532 4445421 13356666666665
Q ss_pred HHc-CCceEEEEEeCCC
Q 042290 118 NQL-KNKKFLLVLDDMW 133 (425)
Q Consensus 118 ~~l-~~k~~LLVlDdv~ 133 (425)
... ..+.-++|+|.+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 443 2455699999984
No 281
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.05 E-value=0.044 Score=45.23 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999774
No 282
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.03 E-value=0.029 Score=49.11 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
....|+|.|++|+||||+++.+.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999988543
No 283
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.03 E-value=0.024 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 284
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.03 E-value=0.03 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
....+++|+|++|+||||++..++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999988743
No 285
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.03 E-value=0.026 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.145 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
....+|+|.|+.|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4557999999999999999999877
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.02 E-value=0.025 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999773
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.00 E-value=0.025 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||++.++.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999873
No 288
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.99 E-value=0.029 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...|+|.|..|+||||+++.+++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.99 E-value=0.027 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.+++|.|+.|+|||||++.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 358999999999999999998873
No 290
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.99 E-value=0.027 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 291
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.98 E-value=0.027 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 292
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.98 E-value=0.028 Score=51.20 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=31.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
-.+++|.|++|+|||||+..++....... -..++|++... +...+...+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHH
Confidence 35899999999999999999887433221 11355665432 3344444433
No 293
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.98 E-value=0.028 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-.++.|.|++|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 294
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.97 E-value=0.026 Score=50.00 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999773
No 295
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.97 E-value=0.2 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998763
No 296
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.96 E-value=0.022 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999773
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.95 E-value=0.027 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-.+++|+|+.|+|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 35899999999999999999876
No 298
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.92 E-value=0.15 Score=49.24 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=34.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQA 99 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 99 (425)
...++.|.|.+|+||||||.+++.+...+ -..++|++.-.. ...+...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHHHH
Confidence 34689999999999999999998754332 235677765433 34444554443
No 299
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.92 E-value=0.06 Score=52.40 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=30.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
....+++|+|..|+|||||++.++..... ....+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~---~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh---cCCeEEEecCcccc
Confidence 45689999999999999999998874321 23445554444444
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.91 E-value=0.048 Score=60.91 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=56.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------VDVNDLNLLQLQLE 117 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~~~l~ 117 (425)
..+++.|.|++|+||||||.+++.... ..-..++|++.....+... +..++-. ....+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 457899999999999999999887432 2334688998877776532 4444411 12345666666665
Q ss_pred HHc-CCceEEEEEeCCCC
Q 042290 118 NQL-KNKKFLLVLDDMWS 134 (425)
Q Consensus 118 ~~l-~~k~~LLVlDdv~~ 134 (425)
... ..+.-++|+|.+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 443 24556999999853
No 301
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.87 E-value=0.084 Score=50.67 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=49.0
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccc-cCC-CeEEEEEeCCCCC-HHHHHHHHHHHh--c------CCCCCCCHHHHH--
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVK-KYF-SFRAWAYVSEDFD-AVGITKVILQAD--A------GSVDVNDLNLLQ-- 113 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~-~~f-~~~~wv~~~~~~~-~~~~~~~il~~l--~------~~~~~~~~~~~~-- 113 (425)
-++|.|.+|+|||+|+.++++..... ++- ..++++-+++... ..++...+...- . ...+........
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 46899999999999999998854321 111 1566666666543 445555544321 1 111222122111
Q ss_pred ---HHHHHHc---CCceEEEEEeCC
Q 042290 114 ---LQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 114 ---~~l~~~l---~~k~~LLVlDdv 132 (425)
-.+.+++ .++.+||++||+
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1123333 378999999998
No 302
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.87 E-value=0.028 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 303
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.87 E-value=0.17 Score=49.10 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=47.9
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCcccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHH---
Q 042290 46 SVIPITGMGGLGKTTLA-QLVFNDVRVKKYFS-FRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNL--- 111 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~--- 111 (425)
.-++|.|..|+|||+|+ ..+.+. ..-+ .++++-+++..+ ..++...+...-. ...+......
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 35789999999999996 466663 2233 467888887654 4445555433211 1111111111
Q ss_pred ------HHHHHHHHcCCceEEEEEeCC
Q 042290 112 ------LQLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 112 ------~~~~l~~~l~~k~~LLVlDdv 132 (425)
..+.++. .++.+||++||+
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 239 PYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 1223332 589999999998
No 304
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.86 E-value=0.029 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999774
No 305
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.84 E-value=0.029 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
...+++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999999987
No 306
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.84 E-value=0.031 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 307
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.84 E-value=0.03 Score=50.42 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 308
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.83 E-value=0.03 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999773
No 309
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.82 E-value=0.042 Score=45.14 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999999775
No 310
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.81 E-value=0.03 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-|+|+|.+|+|||||...+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3789999999999999998764
No 311
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.80 E-value=0.047 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..--|+|+|.+|+|||||+..+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3455889999999999999998764
No 312
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.79 E-value=0.03 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999873
No 313
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.78 E-value=0.036 Score=53.43 Aligned_cols=43 Identities=30% Similarity=0.312 Sum_probs=29.3
Q ss_pred HHHHHHHhhCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 27 KEAIVGLLLGDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 27 ~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.++|.+++..... ...+.+.+|+|+|.+|+||||++..++...
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456666643211 011345789999999999999999988744
No 314
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.77 E-value=0.087 Score=50.56 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=50.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccc--------cCCC-eEEEEEeCCCCC-HHHHHHHHHHHh--c------CCCCCC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVK--------KYFS-FRAWAYVSEDFD-AVGITKVILQAD--A------GSVDVN 107 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~~-~~~~~~~il~~l--~------~~~~~~ 107 (425)
.-++|.|.+|+|||+|+..+++..... ++-+ .++++-+++... ..++...+...- . ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 346889999999999999998854331 1122 566666766543 444555443321 0 112222
Q ss_pred CHHHHH-----HHHHHHc---CCceEEEEEeCC
Q 042290 108 DLNLLQ-----LQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 108 ~~~~~~-----~~l~~~l---~~k~~LLVlDdv 132 (425)
...... -.+.+++ .++.+||++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 222221 1123333 378999999998
No 315
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.74 E-value=0.084 Score=45.77 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=26.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE 85 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 85 (425)
-.|.+.|.||+||||+|..++...... .++ +..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-TCC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCC-EEEEEeCC
Confidence 458899999999999998888754322 233 44555544
No 316
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.73 E-value=0.04 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999874
No 317
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.72 E-value=0.034 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++|+|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999999873
No 318
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.69 E-value=0.032 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 319
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.68 E-value=0.035 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.+++|+|+.|+|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 358999999999999999998763
No 320
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.67 E-value=0.034 Score=45.51 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 042290 47 VIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-|+|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999875
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.67 E-value=0.033 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998763
No 322
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.67 E-value=0.081 Score=48.03 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
++++.+.|.............|+|+|.+|+|||||...+....
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3455555544322112345679999999999999999998753
No 323
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.66 E-value=0.032 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|+.|+|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999873
No 324
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.63 E-value=0.046 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999999875
No 325
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.63 E-value=0.033 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999887
No 326
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.60 E-value=0.05 Score=49.80 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.+++|.|++|+|||||.+.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 588999999999999999998 53
No 327
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.57 E-value=0.044 Score=46.06 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999999875
No 328
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.036 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-|+|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 329
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.55 E-value=0.044 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999764
No 330
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.54 E-value=0.1 Score=44.97 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...|+|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998854
No 331
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.54 E-value=0.037 Score=49.73 Aligned_cols=21 Identities=43% Similarity=0.730 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 042290 47 VIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999876
No 332
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.54 E-value=0.025 Score=50.65 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+...|+|.|..|+||||+++.+.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35578999999999999999988874
No 333
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.52 E-value=0.039 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999875
No 334
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.48 E-value=0.15 Score=48.96 Aligned_cols=107 Identities=14% Similarity=-0.006 Sum_probs=57.2
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC----CCCCCCHHHHHHHHH
Q 042290 42 GRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAG----SVDVNDLNLLQLQLE 117 (425)
Q Consensus 42 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~----~~~~~~~~~~~~~l~ 117 (425)
....++..|.|.+|.|||++.++.++. .....+. .. .+...++.+.+.. .............+.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlT--pT---~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILV--PG---RQAAEMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEE--SC---HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEe--CC---HHHHHHHHHHhhhcCccccccceEEEeHHhhc
Confidence 357789999999999999999998762 1112222 11 2223444444431 111122222333333
Q ss_pred HHcCCc---eEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChh
Q 042290 118 NQLKNK---KFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEG 164 (425)
Q Consensus 118 ~~l~~k---~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~ 164 (425)
+....+ --+||+|++.-.+...+..+..... ..++|+.--..+
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~~Q 271 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDTQQ 271 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECTTS
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCccc
Confidence 322211 2489999996555555555544332 257776665443
No 335
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.47 E-value=0.28 Score=48.15 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=34.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH-HHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV-GITKV 95 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~ 95 (425)
.-++|.|.+|+|||+|+.++++. .+-+.++++-+++..+.. +++..
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred CeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 46899999999999999998773 233577888888776643 44444
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.45 E-value=0.039 Score=47.50 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....|+|+|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 337
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.45 E-value=0.036 Score=46.29 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..--|+|+|.+|+|||||+..+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3445789999999999999999874
No 338
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.43 E-value=0.04 Score=46.06 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+.+|+|+.|+|||||+..++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999998865
No 339
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.41 E-value=0.036 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998764
No 340
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.41 E-value=0.039 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998864
No 341
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.40 E-value=0.047 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.-|.|.|.+|+||||||.++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999877
No 342
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.39 E-value=0.05 Score=45.59 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
....|+|+|.+|+|||||+..+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34568899999999999999998753
No 343
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.36 E-value=0.037 Score=45.13 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 344
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.36 E-value=0.038 Score=57.84 Aligned_cols=54 Identities=24% Similarity=0.181 Sum_probs=38.9
Q ss_pred CCCCccccchhhHHHHHHHhhCCCCC-------CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+.-.+++|-++..+.|.+.+.-.... +-...+.+.++|++|+|||+||+.+++.
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 34456789888888888776432110 1123456889999999999999999984
No 345
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.35 E-value=0.036 Score=46.43 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999888764
No 346
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.35 E-value=0.039 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999764
No 347
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.35 E-value=0.038 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
--|+|+|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999997753
No 348
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.33 E-value=0.23 Score=48.31 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=48.3
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCcccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHHH-
Q 042290 46 SVIPITGMGGLGKTTLA-QLVFNDVRVKKYFS-FRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLLQ- 113 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~~- 113 (425)
.-++|.|.+|+|||+|| ..+++.. ..+ .++++-+++..+ ..++...+...-. ...+........
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999996 4677642 244 356777777654 4455555544211 111221111111
Q ss_pred ----HHHHHHc--CCceEEEEEeCC
Q 042290 114 ----LQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 114 ----~~l~~~l--~~k~~LLVlDdv 132 (425)
-.+.+++ .++.+||++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1122222 588999999998
No 349
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.30 E-value=0.083 Score=46.35 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=26.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEE
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWA 81 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv 81 (425)
....|+|.|+.|+||||+++.+.+.... ..+..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 3468999999999999999999885432 334434433
No 350
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.30 E-value=0.04 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999998764
No 351
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.28 E-value=0.053 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999763
No 352
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.26 E-value=0.034 Score=45.99 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 353
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.26 E-value=0.042 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.26 E-value=0.038 Score=44.94 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.5
Q ss_pred EEEEecCCchHHHHHHHHhc
Q 042290 48 IPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~ 67 (425)
|+|+|.+|+|||||+..+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999875
No 355
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.26 E-value=0.21 Score=48.40 Aligned_cols=83 Identities=24% Similarity=0.260 Sum_probs=47.8
Q ss_pred EEEEEEecCCchHHHHHH-HHhcCcccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHHH-
Q 042290 46 SVIPITGMGGLGKTTLAQ-LVFNDVRVKKYFS-FRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLLQ- 113 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~-~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~~- 113 (425)
.-++|.|.+|+|||+||. .+++.. .-+ .++++-+++..+ ..++...+...-. ...+........
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 457899999999999964 666632 244 356777777654 4445555544211 111111111111
Q ss_pred ----HHHHHHc--CCceEEEEEeCC
Q 042290 114 ----LQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 114 ----~~l~~~l--~~k~~LLVlDdv 132 (425)
-.+.+++ .++.+||++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1122222 588999999998
No 356
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.25 E-value=0.041 Score=49.21 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|.|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 357
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.24 E-value=0.041 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
--|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999874
No 358
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.24 E-value=0.085 Score=47.12 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=27.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
++|+|.|-||+||||+|..++..... .-..+.-++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~--~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA--MGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH--CCCcEEEEcCCCC
Confidence 57888999999999999988874432 2224666666543
No 359
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.24 E-value=0.04 Score=45.52 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..--|+|+|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456899999999999999999875
No 360
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.22 E-value=0.04 Score=46.27 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345889999999999999998764
No 361
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.22 E-value=0.069 Score=54.45 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=39.0
Q ss_pred hhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 24 EKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 24 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
+.+.+.+...|... .+..|+||||+|||+.+.++....- .. ...+.++...+..+..+...+.
T Consensus 192 ~~Q~~AV~~al~~~--------~~~lI~GPPGTGKT~ti~~~I~~l~-~~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--------ELAIIHGPPGTGKTTTVVEIILQAV-KQ--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHHCS--------SEEEEECCTTSCHHHHHHHHHHHHH-HT--TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--------CceEEECCCCCCHHHHHHHHHHHHH-hC--CCeEEEEcCchHHHHHHHHHHH
Confidence 34566677777432 3778999999999976655544322 22 2356677665555666665554
No 362
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.21 E-value=0.058 Score=43.80 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.-|+|.|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999764
No 363
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.20 E-value=0.04 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999764
No 364
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.19 E-value=0.052 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999988764
No 365
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.18 E-value=0.057 Score=44.55 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...-|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456899999999999999998775
No 366
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.18 E-value=0.042 Score=50.74 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+.++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999864
No 367
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.17 E-value=0.05 Score=49.92 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.9
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 42 GRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 42 ~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+..+.|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 356789999999999999999998875
No 368
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.16 E-value=0.044 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.075 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.++.|+|+.|+||||++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999777664
No 369
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.13 E-value=0.053 Score=44.82 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...-|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4456899999999999999998764
No 370
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.12 E-value=0.053 Score=50.76 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999986
No 371
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.11 E-value=0.09 Score=48.77 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=30.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
..+++++.|-||+||||+|..++.... ..-..++-++.....+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~~~~l 58 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPAHNL 58 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSSCHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCCCCCh
Confidence 457889999999999999998877433 22234666776644433
No 372
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.11 E-value=0.047 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.+++|+|+.|+|||||.+.++.-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999774
No 373
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.10 E-value=0.035 Score=47.08 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
..--|+|+|.+|+|||||+..+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 445689999999999999999864
No 374
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.10 E-value=0.044 Score=46.15 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.-|+|+|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999999864
No 375
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.09 E-value=0.099 Score=45.93 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=28.8
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 48 IPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
|+|.|-||+||||+|..++...... -..++-++.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD--YDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT--CSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCcChH
Confidence 5669999999999999988754322 2446777766554443
No 376
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.09 E-value=0.055 Score=45.61 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
....-|+|+|.+|+|||||...+....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456778999999999999999998753
No 377
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.08 E-value=0.042 Score=47.56 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 042290 48 IPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~ 68 (425)
|+|+|.+|||||+|+..+..+
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 678999999999999998764
No 378
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.04 E-value=0.033 Score=47.60 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....|+|+|.+|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999988764
No 379
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.04 E-value=0.045 Score=44.65 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998764
No 380
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.01 E-value=0.047 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 381
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.00 E-value=0.23 Score=48.87 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=34.9
Q ss_pred HHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 30 IVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 30 l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
.++.|..-. +-.-++|.|.+|+|||+|+.++++.. +-+.++++-+++..
T Consensus 222 vID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~ 270 (600)
T 3vr4_A 222 VIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERG 270 (600)
T ss_dssp HHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECH
T ss_pred hhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccH
Confidence 455554432 33468999999999999999998742 23567788777664
No 382
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.98 E-value=0.05 Score=50.90 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|.|+.|+|||||.+.++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999976
No 383
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.97 E-value=0.047 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 384
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.94 E-value=0.047 Score=45.02 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...-|+|+|.+|+|||||+..+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998653
No 385
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.91 E-value=0.18 Score=48.95 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=47.4
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCcccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCH-----
Q 042290 46 SVIPITGMGGLGKTTLA-QLVFNDVRVKKYFS-FRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDL----- 109 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~----- 109 (425)
.-++|.|.+|+|||+|| ..+++.. ..+ .++++-+++... ..++...+...-. ...+....
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45789999999999996 4677642 234 457777777654 3344444433111 11111111
Q ss_pred ----HHHHHHHHHHcCCceEEEEEeCC
Q 042290 110 ----NLLQLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 110 ----~~~~~~l~~~l~~k~~LLVlDdv 132 (425)
-...+.++. .++.+||++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 122233443 589999999998
No 386
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.90 E-value=0.09 Score=49.08 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=30.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
..+++.+.|.||+||||+|..++........-..+.-++.....+
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 457999999999999999998876432102233466666654433
No 387
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.90 E-value=0.06 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
...+++|+|++|+|||||...+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999999875
No 388
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.88 E-value=0.039 Score=48.59 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=31.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
.-.++.|.|.+|+|||+||.+++.+.. ...-..+++++... +...+...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSS--CHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccC--CHHHHHHH
Confidence 346899999999999999998765321 22223466666443 34444433
No 389
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.88 E-value=0.063 Score=43.87 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999764
No 390
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.87 E-value=0.048 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998643
No 391
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.83 E-value=0.075 Score=51.26 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=50.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccC--CCeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHHH-
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKY--FSFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLLQ- 113 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~~- 113 (425)
.-++|.|.+|+|||+|+..++++....+. -+.++++-+++... ..++...+...-. ...+........
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 34678899999999999999885443221 13566666666543 4455555554311 111221111111
Q ss_pred ----HHHHHHc---CCceEEEEEeCC
Q 042290 114 ----LQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 114 ----~~l~~~l---~~k~~LLVlDdv 132 (425)
-.+.+++ .++.+||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1122333 378999999997
No 392
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.83 E-value=0.053 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.--|+|+|.+|+|||||+..+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34589999999999999999875
No 393
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.81 E-value=0.072 Score=46.29 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...-|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999875
No 394
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.80 E-value=0.05 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 395
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.80 E-value=0.072 Score=48.69 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|++|+|||||.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 48899999999999999999874
No 396
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.75 E-value=0.051 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 397
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.75 E-value=0.056 Score=44.80 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...-|+|+|.+|+|||||+..+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999854
No 398
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.75 E-value=0.062 Score=50.60 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...++|+|+.|+|||||++.++.-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 399
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.74 E-value=0.12 Score=44.51 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
..|+|.|+.|+||||+++.+.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999988544
No 400
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.73 E-value=0.052 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998864
No 401
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.71 E-value=0.052 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999987
No 402
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.71 E-value=0.058 Score=45.73 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999875
No 403
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.71 E-value=0.051 Score=45.67 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 404
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.70 E-value=0.1 Score=52.14 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
++..+|.|.|++|+||||+|+.+.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999998843
No 405
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.70 E-value=0.061 Score=50.16 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 58999999999999999999763
No 406
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.69 E-value=0.066 Score=46.51 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
.....|+|.|..|+||||+++.+.+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999988543
No 407
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.69 E-value=0.058 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|.++|++|.||||+|+.+++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 408
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.68 E-value=0.059 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999987764
No 409
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.68 E-value=0.054 Score=46.31 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999875
No 410
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.67 E-value=0.057 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999874
No 411
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.66 E-value=0.055 Score=46.13 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999998764
No 412
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.66 E-value=0.052 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345889999999999999998764
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.64 E-value=0.054 Score=44.99 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..-|+|+|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356889999999999999999864
No 414
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.63 E-value=0.054 Score=45.73 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999998764
No 415
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.61 E-value=0.059 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999864
No 416
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.59 E-value=0.059 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998763
No 417
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.57 E-value=0.059 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...-|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998754
No 418
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.57 E-value=0.056 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998764
No 419
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.57 E-value=0.063 Score=45.58 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999999764
No 420
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.56 E-value=0.09 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||...+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999864
No 421
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.55 E-value=0.057 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999999764
No 422
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.54 E-value=0.11 Score=46.99 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=27.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
++|+|.|-||+||||+|..++...... -..+.-++....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 578889999999999999988744322 224566665543
No 423
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.53 E-value=0.07 Score=50.39 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEE-EEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRA-WAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 122 (425)
...+++|+|+.|+|||||++.+..... ......+ ++.. +... ....-...+....-..+...+...+...+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~--~~e~--~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIED--PIEY--VFKHKKSIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEES--SCCS--CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecc--cHhh--hhccCceEEEeeecCCCHHHHHHHHHHHhhh
Confidence 346899999999999999999877322 1112233 3321 1110 0000000000000000111224566677776
Q ss_pred ceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChh
Q 042290 123 KKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEG 164 (425)
Q Consensus 123 k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~ 164 (425)
.+-+|++|... +.+......... ..|..++.|+....
T Consensus 209 ~pd~illdE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 209 DPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred CcCEEEECCCC--CHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 77789999994 334433333222 23556777776543
No 424
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.52 E-value=0.079 Score=44.11 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+..-|+|.|.+|+|||||...+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998754
No 425
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.52 E-value=0.056 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999875
No 426
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.52 E-value=0.045 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999877
No 427
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.50 E-value=0.058 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|.|+.|+|||||.+.++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999876
No 428
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.50 E-value=0.1 Score=58.40 Aligned_cols=83 Identities=14% Similarity=0.054 Sum_probs=58.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHHHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------VDVNDLNLLQLQL 116 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~~~l 116 (425)
++-++|-|+|+.|+||||||.++.. ..++.=...+|+...+..+... ++.++-+ ...+..++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 3458999999999999999999987 3444556788998877777653 5565511 2344556666666
Q ss_pred HHHcC-CceEEEEEeCC
Q 042290 117 ENQLK-NKKFLLVLDDM 132 (425)
Q Consensus 117 ~~~l~-~k~~LLVlDdv 132 (425)
...++ +..-++|+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 55554 44569999988
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.48 E-value=0.058 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999998765
No 430
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.46 E-value=0.062 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 58999999999999999999763
No 431
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.46 E-value=0.087 Score=44.37 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999764
No 432
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.46 E-value=0.056 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=19.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.--|+|+|.+|+|||||++.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34588999999999999976655
No 433
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.45 E-value=0.092 Score=43.52 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..--|+|+|.+|+|||||+..+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998864
No 434
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.45 E-value=0.065 Score=50.19 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=33.5
Q ss_pred HHHHHHHcCCceEEEEEeCCCC-CChHHHhccccccCCC--CCCcEEEEecCChhhhhc
Q 042290 113 QLQLENQLKNKKFLLVLDDMWS-ENYDVRANLCKPFKAG--LPGSKIIVTTRNEGVSSM 168 (425)
Q Consensus 113 ~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~--~~~~~ilvTtR~~~v~~~ 168 (425)
.-.+.+.|..++-+|++|.--. -+...-..+...+... ..|..||++|.+-..+..
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 3446677778888999998743 2333333333333321 236788888888655443
No 435
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.45 E-value=0.058 Score=45.79 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...-|+|+|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568999999999999999998753
No 436
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.45 E-value=0.071 Score=45.96 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 44678899999999999999998763
No 437
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.44 E-value=0.064 Score=45.39 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999874
No 438
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.44 E-value=0.059 Score=45.35 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998753
No 439
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.43 E-value=0.065 Score=45.01 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35789999999999999998764
No 440
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.42 E-value=0.065 Score=44.77 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=25.1
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 48 IPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
+.|+|.+|+|||++|.+++.. . ..++++.-...+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~---~---~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD---A---PQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS---C---SSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc---C---CCeEEEecCCCC
Confidence 789999999999999999874 1 235666655443
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.42 E-value=0.06 Score=46.14 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999864
No 442
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.41 E-value=0.066 Score=46.00 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..--|+|+|.+|+|||||+..+...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3356889999999999999999864
No 443
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.39 E-value=0.077 Score=44.52 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
..--|+|+|.+|+|||||+..+....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999998753
No 444
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.39 E-value=0.067 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 58999999999999999999763
No 445
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.38 E-value=0.084 Score=44.71 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...-|+|+|.+|+|||||+..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998764
No 446
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.38 E-value=0.078 Score=52.04 Aligned_cols=47 Identities=4% Similarity=-0.089 Sum_probs=31.5
Q ss_pred cccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 20 VYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 20 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
.+.|.+-.+.+.+... +. .++..+|.+.|++|+||||+|+.+++...
T Consensus 374 ~f~rpeV~~vLr~~~~-~~---~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 374 WFSYPEVVKILRESNP-PR---PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TTSCHHHHHHHHHHSC-CG---GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccChhhHHHHHHhcc-cc---cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3445444445555431 11 12447899999999999999999998543
No 447
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.37 E-value=0.06 Score=45.31 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999864
No 448
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.36 E-value=0.096 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|++|+|||||+..+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999874
No 449
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.36 E-value=0.14 Score=45.84 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
....|+++|.+|+|||||...++...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998753
No 450
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.34 E-value=0.068 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999998763
No 451
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.34 E-value=0.079 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+..+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999999999875
No 452
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.33 E-value=0.061 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999998764
No 453
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.33 E-value=0.041 Score=47.28 Aligned_cols=109 Identities=11% Similarity=0.010 Sum_probs=52.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSV---DVNDLNLLQLQLENQL 120 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~---~~~~~~~~~~~l~~~l 120 (425)
...+.+++|+-|.||||.+...+.+.... .....+ +.-.. +...-...+...++... ...+.+ .+...+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli-~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIV-FKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEE-EECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEE-EEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 34788999999999999998887744322 233333 32111 11111122333333110 111111 122233
Q ss_pred CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 121 KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 121 ~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
.++--+|++|.+.--+.+.++.+. .+.+ .+..||+|.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEeccc
Confidence 333349999998543334443332 2222 367899999964
No 454
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.29 E-value=0.14 Score=46.83 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+.|+|+|.+|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 35678999999999999999999774
No 455
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.26 E-value=0.061 Score=49.18 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 042290 47 VIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-|+|+|++|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999765
No 456
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.24 E-value=0.068 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 58999999999999999998763
No 457
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.24 E-value=0.089 Score=46.11 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...-|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998753
No 458
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.22 E-value=0.076 Score=52.80 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..+++|+|+.|+|||||++.++..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3468999999999999999999884
No 459
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.19 E-value=0.067 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.18 E-value=0.065 Score=45.38 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..--|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998764
No 461
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.17 E-value=0.067 Score=44.85 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999765
No 462
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.16 E-value=0.083 Score=44.82 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..--|+|+|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4456899999999999999998764
No 463
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.15 E-value=0.074 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|.|+.|+|||||.+.++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999999876
No 464
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.15 E-value=0.18 Score=46.50 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=30.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
..++...|.||+||||+|..++.... ..-..+.-++.....+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~~~~l~ 57 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMA--RSGKKTLVISTDPAHSLS 57 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEECCSSCCHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH--HCCCcEEEEeCCCCcCHH
Confidence 57788889999999999999877433 222346666665544444
No 465
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.13 E-value=0.091 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999875
No 466
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.12 E-value=0.15 Score=45.44 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+.-.|+|+|.+|+|||||+..+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998753
No 467
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=92.11 E-value=0.7 Score=42.59 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|+|.+|+|||||+..+...
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSS
T ss_pred eEEEECCCCccHHHHHHHHhCC
Confidence 5899999999999999998764
No 468
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.08 E-value=0.096 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356789999999999999999764
No 469
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.06 E-value=0.16 Score=43.17 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHhcCcc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
.|+|-|.-|+||||.++.+++...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999988543
No 470
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.05 E-value=0.12 Score=45.09 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=19.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+...|+|.|+.|+||||+++.+.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998854
No 471
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.04 E-value=0.061 Score=45.10 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
--|+|+|.+|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998753
No 472
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.02 E-value=0.074 Score=44.71 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999865
No 473
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.00 E-value=0.047 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=10.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988764
No 474
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.00 E-value=0.16 Score=47.51 Aligned_cols=40 Identities=23% Similarity=0.113 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE 85 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 85 (425)
...++.+.|.||+||||+|..++..... .=..++-++...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~--~G~rVLlvD~D~ 64 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAE--KGLKVVIVSTDP 64 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHH--SSCCEEEEECCT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 4577788899999999999988774332 222455666544
No 475
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.074 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.-|+|+|.+|+|||||+..+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999998874
No 476
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.99 E-value=0.22 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.098 Sum_probs=20.0
Q ss_pred CcEEEEEEecCCchHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLV 65 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~ 65 (425)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 477
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.98 E-value=0.074 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456899999999999999998764
No 478
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.97 E-value=0.35 Score=47.04 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=48.9
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCccc----ccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHH
Q 042290 46 SVIPITGMGGLGKTTLA-QLVFNDVRV----KKYFS-FRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLN 110 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa-~~~~~~~~~----~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~ 110 (425)
.-++|.|.+|+|||+|| ..+++.... .++-+ .++++-+++..+ ..++...+...-. ...+.....
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 45789999999999995 466664321 01233 467777877654 4445555544211 111111111
Q ss_pred HHH-----HHHHHHc--CCceEEEEEeCC
Q 042290 111 LLQ-----LQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 111 ~~~-----~~l~~~l--~~k~~LLVlDdv 132 (425)
... -.+.+++ .++.+||++||+
T Consensus 243 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 111 1122222 588999999998
No 479
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.94 E-value=0.093 Score=43.89 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...-|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998754
No 480
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.93 E-value=0.075 Score=45.40 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998764
No 481
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.93 E-value=0.09 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..+|.|.|++|+||||+|+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 482
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.92 E-value=0.079 Score=51.74 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|.++|.+|+||||+++.+++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999874
No 483
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.92 E-value=0.08 Score=45.22 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=21.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+|+|.|+.|+||||+++.+++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999884
No 484
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.85 E-value=0.11 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.++.+|+|+.|.|||||..+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999988764
No 485
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.85 E-value=0.079 Score=44.95 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998864
No 486
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.84 E-value=0.13 Score=48.44 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=30.6
Q ss_pred CCCcEEEEEEe-cCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 42 GRGFSVIPITG-MGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 42 ~~~~~vv~I~G-~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.++.++|+|+| -||+||||+|..++..... .-..++.+++...
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~--~g~rVlliD~D~~ 183 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHAN--MGKKVFYLNIEQC 183 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHH--HTCCEEEEECCTT
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHh--CCCCEEEEECCCC
Confidence 35678888885 8999999999998874332 2234677776633
No 487
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.84 E-value=0.07 Score=50.15 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++|+|+.|+|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999884
No 488
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.82 E-value=0.085 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-.+++|.|+.|+|||||.+.++.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 35899999999999999999976
No 489
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.81 E-value=0.11 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..|+|+|.+|+|||||...+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999874
No 490
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.73 E-value=0.089 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.--|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999999874
No 491
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.73 E-value=0.079 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
--|+|+|.+|+|||||+..+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999998765
No 492
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.73 E-value=0.079 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..-|+|+|.+|+|||||+..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998764
No 493
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.71 E-value=0.17 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+++|+|+.|+|||||.+.+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999998773
No 494
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.71 E-value=0.13 Score=43.73 Aligned_cols=42 Identities=21% Similarity=0.078 Sum_probs=28.4
Q ss_pred EEEEEE-ecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 46 SVIPIT-GMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 46 ~vv~I~-G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
++|+|+ +-||+||||+|..++..... .-..+..++.....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~--~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR--SGYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEECCCCCCH
Confidence 467777 67999999999998874432 2234666776654433
No 495
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.68 E-value=0.14 Score=51.88 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=31.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
++..|.|++|+|||+++..++.... ..-...+.++.........+...+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~--~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLA--RQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH--TSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 3678999999999998877765321 1123456666655544555555443
No 496
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.67 E-value=0.11 Score=47.51 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+.+.|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999875
No 497
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.58 E-value=0.08 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.-.++|.|++|+||||+|+.+++.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999874
No 498
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.56 E-value=0.11 Score=46.04 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999999764
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.55 E-value=0.14 Score=43.85 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+.|+|-|..|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999988854
No 500
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.48 E-value=0.064 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|++|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999998763
Done!