Query 042291
Match_columns 241
No_of_seqs 118 out of 272
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.2 1.4E-11 4.8E-16 92.8 5.6 48 189-236 16-64 (82)
2 4h10_B Circadian locomoter out 99.1 9.3E-11 3.2E-15 87.3 6.5 47 189-235 18-65 (71)
3 4ati_A MITF, microphthalmia-as 99.0 2.5E-10 8.5E-15 91.4 6.2 47 189-235 37-87 (118)
4 4h10_A ARYL hydrocarbon recept 99.0 1.4E-10 4.8E-15 86.4 2.5 41 189-229 19-63 (73)
5 1a0a_A BHLH, protein (phosphat 99.0 1.1E-10 3.6E-15 84.5 0.8 44 189-232 12-62 (63)
6 1an4_A Protein (upstream stimu 98.9 1.7E-10 5.8E-15 82.7 1.1 46 187-232 12-64 (65)
7 1nkp_B MAX protein, MYC proto- 98.9 3E-09 1E-13 79.5 5.9 47 189-235 12-60 (83)
8 1hlo_A Protein (transcription 98.8 3.2E-09 1.1E-13 79.0 5.3 48 189-236 22-71 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 98.8 7.6E-09 2.6E-13 79.0 5.6 47 189-235 16-65 (88)
10 3u5v_A Protein MAX, transcript 98.7 2.3E-08 7.7E-13 74.9 5.2 51 189-239 15-69 (76)
11 1nlw_A MAD protein, MAX dimeri 98.4 5.5E-07 1.9E-11 67.7 6.4 47 189-235 11-60 (80)
12 4f3l_A Mclock, circadian locom 98.2 1E-06 3.4E-11 79.1 5.8 43 189-231 22-65 (361)
13 4f3l_B BMAL1B; BHLH, PAS, circ 98.0 3.3E-06 1.1E-10 76.9 4.6 42 189-230 23-68 (387)
14 1mdy_A Protein (MYOD BHLH doma 97.9 9.1E-06 3.1E-10 59.6 4.5 45 187-231 19-66 (68)
15 2ql2_B Neurod1, neurogenic dif 97.9 2E-05 6.7E-10 56.4 5.1 45 188-232 10-58 (60)
16 2lfh_A DNA-binding protein inh 97.7 4.4E-05 1.5E-09 56.6 4.6 45 185-229 19-67 (68)
17 4ath_A MITF, microphthalmia-as 97.6 7.1E-05 2.4E-09 57.3 5.6 44 191-234 4-51 (83)
18 4aya_A DNA-binding protein inh 96.6 0.005 1.7E-07 48.3 6.5 52 185-236 30-85 (97)
19 1m2x_A Class B carbapenemase B 61.8 2.5 8.7E-05 34.0 1.1 31 202-233 190-221 (223)
20 1wr6_A ADP-ribosylation factor 43.7 39 0.0013 26.3 5.2 44 192-235 11-58 (111)
21 1pd7_B MAD1; PAH2, SIN3, eukar 38.6 33 0.0011 20.9 3.2 21 211-231 2-22 (26)
22 1a7t_A Metallo-beta-lactamase; 36.5 22 0.00077 28.6 2.9 30 202-232 200-230 (232)
23 2fhx_A SPM-1; metallo-beta-lac 35.8 17 0.0006 29.2 2.1 30 202-232 215-245 (246)
24 2y8b_A Metallo-B-lactamase; hy 30.1 14 0.00047 30.9 0.7 31 202-233 233-264 (265)
25 1wrd_A TOM1, target of MYB pro 29.9 70 0.0024 24.3 4.6 43 192-234 16-62 (103)
26 2djv_A Methionyl-tRNA syntheta 29.2 80 0.0027 23.2 4.6 42 190-237 18-62 (79)
27 1xkm_B Distinctin chain B; por 22.1 1.2E+02 0.0042 18.1 3.6 24 213-236 2-25 (26)
28 4hl2_A Beta-lactamase NDM-1; s 21.4 51 0.0017 26.6 2.5 24 203-227 218-242 (243)
29 1y2i_A Hypothetical protein S0 20.7 87 0.003 25.2 3.7 47 191-238 53-100 (133)
30 2ke4_A CDC42-interacting prote 20.1 1.4E+02 0.0048 22.7 4.6 30 206-235 52-82 (98)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.21 E-value=1.4e-11 Score=92.78 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhhccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHhcC
Q 042291 189 KKRQKLKKMVNVLRGFVPGG-NELNTVGVLDEAVRHLKSLKVEVQNLGV 236 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg~-~~~D~asvLdEaI~YLKsLk~qV~~L~~ 236 (241)
+||++||+.|..|+.|||++ .++|+++||.+||+||+.|+.+++.|..
T Consensus 16 rRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 16 RYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999996 8999999999999999999999999864
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.12 E-value=9.3e-11 Score=87.32 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHhhccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291 189 KKRQKLKKMVNVLRGFVPGG-NELNTVGVLDEAVRHLKSLKVEVQNLG 235 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg~-~~~D~asvLdEaI~YLKsLk~qV~~L~ 235 (241)
+||++||+.|..|++|||++ .++|+++||..||+|||.||.++.-|+
T Consensus 18 rRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 18 KRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 58999999999999999984 699999999999999999999998775
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.04 E-value=2.5e-10 Score=91.42 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhhccCCCCC----CcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291 189 KKRQKLKKMVNVLRGFVPGGN----ELNTVGVLDEAVRHLKSLKVEVQNLG 235 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg~~----~~D~asvLdEaI~YLKsLk~qV~~L~ 235 (241)
+||++||++|..|+.|||++. ++++++||+.||+||+.||.+++.|.
T Consensus 37 rRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~ 87 (118)
T 4ati_A 37 RRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 87 (118)
T ss_dssp HHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999874 56899999999999999999999885
No 4
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.98 E-value=1.4e-10 Score=86.44 Aligned_cols=41 Identities=32% Similarity=0.605 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhhccCCCC----CCcchhhHHHHHHHHHHHHHH
Q 042291 189 KKRQKLKKMVNVLRGFVPGG----NELNTVGVLDEAVRHLKSLKV 229 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg~----~~~D~asvLdEaI~YLKsLk~ 229 (241)
+||++||+.|..|+.|||++ .++|+++||+.||+|||.|+.
T Consensus 19 rRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 19 RRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 58999999999999999985 799999999999999999974
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.95 E-value=1.1e-10 Score=84.54 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHhhccCCCC-------CCcchhhHHHHHHHHHHHHHHHHH
Q 042291 189 KKRQKLKKMVNVLRGFVPGG-------NELNTVGVLDEAVRHLKSLKVEVQ 232 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg~-------~~~D~asvLdEaI~YLKsLk~qV~ 232 (241)
+||++||..|..|++|||++ .+..+|+||+.||+|||.||.+|+
T Consensus 12 ~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 12 ARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 59999999999999999965 345699999999999999998764
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.93 E-value=1.7e-10 Score=82.69 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=41.0
Q ss_pred ch-hhHHHHHHHHHHhhccCCCCC------CcchhhHHHHHHHHHHHHHHHHH
Q 042291 187 NG-KKRQKLKKMVNVLRGFVPGGN------ELNTVGVLDEAVRHLKSLKVEVQ 232 (241)
Q Consensus 187 ~~-kRRekI~e~~~~L~~lVPg~~------~~D~asvLdEaI~YLKsLk~qV~ 232 (241)
.| +||++||+.|..|+.|||++. ++++++||..||+||+.||.+.+
T Consensus 12 ~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 12 VERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35 489999999999999999965 68999999999999999998753
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=98.86 E-value=3e-09 Score=79.47 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291 189 KKRQKLKKMVNVLRGFVPG--GNELNTVGVLDEAVRHLKSLKVEVQNLG 235 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg--~~~~D~asvLdEaI~YLKsLk~qV~~L~ 235 (241)
+||++||+.|..|+.+||+ +.++++++||..||+||+.|+.+++.|.
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~ 60 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQ 60 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998 5889999999999999999999888774
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.83 E-value=3.2e-09 Score=79.04 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhhccCCCC--CCcchhhHHHHHHHHHHHHHHHHHHhcC
Q 042291 189 KKRQKLKKMVNVLRGFVPGG--NELNTVGVLDEAVRHLKSLKVEVQNLGV 236 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg~--~~~D~asvLdEaI~YLKsLk~qV~~L~~ 236 (241)
+||.+||..|..|+.+||+. .++++++||..||+||+.|+.+++.|..
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999984 6899999999999999999999999863
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.77 E-value=7.6e-09 Score=79.00 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhhccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291 189 KKRQKLKKMVNVLRGFVPGG---NELNTVGVLDEAVRHLKSLKVEVQNLG 235 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg~---~~~D~asvLdEaI~YLKsLk~qV~~L~ 235 (241)
+||++||+.|..|+.+||+. .++++++||..||+||+.|+.+.+.|.
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999984 699999999999999999999987753
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.66 E-value=2.3e-08 Score=74.92 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhhccCCC---CCCc-chhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 042291 189 KKRQKLKKMVNVLRGFVPG---GNEL-NTVGVLDEAVRHLKSLKVEVQNLGVGNM 239 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg---~~~~-D~asvLdEaI~YLKsLk~qV~~L~~~~~ 239 (241)
+||++||+.|..|+.+||. +.+. .++.||..||+||++||.++++++..-+
T Consensus 15 ~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~~~ 69 (76)
T 3u5v_A 15 KRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPL 69 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred hhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4899999999999999994 3444 6889999999999999999999987643
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.39 E-value=5.5e-07 Score=67.74 Aligned_cols=47 Identities=28% Similarity=0.433 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhhccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291 189 KKRQKLKKMVNVLRGFVPGG---NELNTVGVLDEAVRHLKSLKVEVQNLG 235 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg~---~~~D~asvLdEaI~YLKsLk~qV~~L~ 235 (241)
+||..||..|..|+.+||.+ .++.+++||..||+||+.|+.+.+.|.
T Consensus 11 ~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~ 60 (80)
T 1nlw_A 11 NRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV 60 (80)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999964 677889999999999999999998774
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.24 E-value=1e-06 Score=79.14 Aligned_cols=43 Identities=21% Similarity=0.499 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHhhccCCC-CCCcchhhHHHHHHHHHHHHHHHH
Q 042291 189 KKRQKLKKMVNVLRGFVPG-GNELNTVGVLDEAVRHLKSLKVEV 231 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVPg-~~~~D~asvLdEaI~YLKsLk~qV 231 (241)
+||+|||+.|..|++|||+ ..++||++||..||.|||.|+...
T Consensus 22 ~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 22 KRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 5899999999999999994 679999999999999999998654
No 13
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.03 E-value=3.3e-06 Score=76.89 Aligned_cols=42 Identities=31% Similarity=0.591 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHhhccCC----CCCCcchhhHHHHHHHHHHHHHHH
Q 042291 189 KKRQKLKKMVNVLRGFVP----GGNELNTVGVLDEAVRHLKSLKVE 230 (241)
Q Consensus 189 kRRekI~e~~~~L~~lVP----g~~~~D~asvLdEaI~YLKsLk~q 230 (241)
+||+|||+.|..|+.||| ...++||++||..||.|||.|+..
T Consensus 23 ~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 23 RRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 589999999999999999 678999999999999999999843
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=97.93 E-value=9.1e-06 Score=59.62 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=40.2
Q ss_pred chh-hHHHHHHHHHHhhccCCC--CCCcchhhHHHHHHHHHHHHHHHH
Q 042291 187 NGK-KRQKLKKMVNVLRGFVPG--GNELNTVGVLDEAVRHLKSLKVEV 231 (241)
Q Consensus 187 ~~k-RRekI~e~~~~L~~lVPg--~~~~D~asvLdEaI~YLKsLk~qV 231 (241)
.|+ |+..||+.|..|+.+||. ++++.++.+|-.||+||..|+..+
T Consensus 19 rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 19 RERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 354 789999999999999997 578899999999999999999764
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=97.85 E-value=2e-05 Score=56.45 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=40.2
Q ss_pred hh-hHHHHHHHHHHhhccCCC---CCCcchhhHHHHHHHHHHHHHHHHH
Q 042291 188 GK-KRQKLKKMVNVLRGFVPG---GNELNTVGVLDEAVRHLKSLKVEVQ 232 (241)
Q Consensus 188 ~k-RRekI~e~~~~L~~lVPg---~~~~D~asvLdEaI~YLKsLk~qV~ 232 (241)
|+ |+..||+.|..|+.+||. ++++.++.+|-.||+||+.|+..++
T Consensus 10 ER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 10 ERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 44 789999999999999996 4688999999999999999998764
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=97.67 E-value=4.4e-05 Score=56.56 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=39.2
Q ss_pred ccchh-hHHHHHHHHHHhhccCCC---CCCcchhhHHHHHHHHHHHHHH
Q 042291 185 CHNGK-KRQKLKKMVNVLRGFVPG---GNELNTVGVLDEAVRHLKSLKV 229 (241)
Q Consensus 185 c~~~k-RRekI~e~~~~L~~lVPg---~~~~D~asvLdEaI~YLKsLk~ 229 (241)
|..|| |...||..|..||.+||. .+++.|+.+|--||+||+.||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 44555 678999999999999987 4788999999999999999983
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.64 E-value=7.1e-05 Score=57.34 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhccCCCC----CCcchhhHHHHHHHHHHHHHHHHHHh
Q 042291 191 RQKLKKMVNVLRGFVPGG----NELNTVGVLDEAVRHLKSLKVEVQNL 234 (241)
Q Consensus 191 RekI~e~~~~L~~lVPg~----~~~D~asvLdEaI~YLKsLk~qV~~L 234 (241)
|..||.++..|..|||.. .+.++.+||-.||+|++.||..++.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~ 51 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 51 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999974 35799999999999999998766654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=96.57 E-value=0.005 Score=48.26 Aligned_cols=52 Identities=10% Similarity=0.229 Sum_probs=43.0
Q ss_pred ccchh-hHHHHHHHHHHhhccCCC---CCCcchhhHHHHHHHHHHHHHHHHHHhcC
Q 042291 185 CHNGK-KRQKLKKMVNVLRGFVPG---GNELNTVGVLDEAVRHLKSLKVEVQNLGV 236 (241)
Q Consensus 185 c~~~k-RRekI~e~~~~L~~lVPg---~~~~D~asvLdEaI~YLKsLk~qV~~L~~ 236 (241)
|..++ |-..||+.|..||.+||. .+++-|+.+|--||+|++.|+.-++.-..
T Consensus 30 ~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 30 VDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44443 667799999999999996 57889999999999999999998876543
No 19
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=61.78 E-value=2.5 Score=34.01 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=24.1
Q ss_pred hccCCC-CCCcchhhHHHHHHHHHHHHHHHHHH
Q 042291 202 RGFVPG-GNELNTVGVLDEAVRHLKSLKVEVQN 233 (241)
Q Consensus 202 ~~lVPg-~~~~D~asvLdEaI~YLKsLk~qV~~ 233 (241)
.-++|| +... ....|+.+++||+.++.+|++
T Consensus 190 ~~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 468899 5555 467999999999999998864
No 20
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=43.74 E-value=39 Score=26.33 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHHHhh----ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291 192 QKLKKMVNVLR----GFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLG 235 (241)
Q Consensus 192 ekI~e~~~~L~----~lVPg~~~~D~asvLdEaI~YLKsLk~qV~~L~ 235 (241)
++|+.++++|. .+.||....+..-+|.|-..=+|.+|-++..|=
T Consensus 11 e~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~ 58 (111)
T 1wr6_A 11 EEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLA 58 (111)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555 555887777777899999999999999999884
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=38.63 E-value=33 Score=20.94 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=17.2
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 042291 211 LNTVGVLDEAVRHLKSLKVEV 231 (241)
Q Consensus 211 ~D~asvLdEaI~YLKsLk~qV 231 (241)
+..+.+|=||..||...+++.
T Consensus 2 ~~nvq~LLeAAeyLErrEre~ 22 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERREREA 22 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999877754
No 22
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=36.50 E-value=22 Score=28.60 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=24.0
Q ss_pred hccCCC-CCCcchhhHHHHHHHHHHHHHHHHH
Q 042291 202 RGFVPG-GNELNTVGVLDEAVRHLKSLKVEVQ 232 (241)
Q Consensus 202 ~~lVPg-~~~~D~asvLdEaI~YLKsLk~qV~ 232 (241)
.-++|| +.-.+ ..+|+.+++||+.|+.+|+
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhc
Confidence 568999 54444 5789999999999998875
No 23
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=35.77 E-value=17 Score=29.21 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=24.4
Q ss_pred hccCCC-CCCcchhhHHHHHHHHHHHHHHHHH
Q 042291 202 RGFVPG-GNELNTVGVLDEAVRHLKSLKVEVQ 232 (241)
Q Consensus 202 ~~lVPg-~~~~D~asvLdEaI~YLKsLk~qV~ 232 (241)
..++|| +.-.+ ...|.++++||+.|+.+|+
T Consensus 215 ~~i~pgHg~~~~-~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 215 KIVIPGHGEWGG-PEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp SEEEESBSCCBS-THHHHHHHHHHHHHHHHHT
T ss_pred CEEECCCCCcCC-HHHHHHHHHHHHHHHHHhc
Confidence 468899 55454 6889999999999999885
No 24
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=30.13 E-value=14 Score=30.92 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=18.2
Q ss_pred hccCCC-CCCcchhhHHHHHHHHHHHHHHHHHH
Q 042291 202 RGFVPG-GNELNTVGVLDEAVRHLKSLKVEVQN 233 (241)
Q Consensus 202 ~~lVPg-~~~~D~asvLdEaI~YLKsLk~qV~~ 233 (241)
.-++|| +.-.+ ...|+.+++||+.++.+|++
T Consensus 233 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~v~~ 264 (265)
T 2y8b_A 233 EVVIPGHGLPGG-LELLQHTTNVVKTHKVRPVA 264 (265)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHC--------
T ss_pred CEEECCCCCCCC-HHHHHHHHHHHHHHHHHhhc
Confidence 568999 44444 57899999999999999874
No 25
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=29.93 E-value=70 Score=24.29 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=31.4
Q ss_pred HHHHHHHHHh----hccCCCCCCcchhhHHHHHHHHHHHHHHHHHHh
Q 042291 192 QKLKKMVNVL----RGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNL 234 (241)
Q Consensus 192 ekI~e~~~~L----~~lVPg~~~~D~asvLdEaI~YLKsLk~qV~~L 234 (241)
++|+..+++| ..+.||...-...-+|.|-..=.|++|.+|..|
T Consensus 16 ~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~l 62 (103)
T 1wrd_A 16 EMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLEL 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554 455688766566678899999999999998876
No 26
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.20 E-value=80 Score=23.16 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=29.2
Q ss_pred hHHHHHH---HHHHhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHhcCC
Q 042291 190 KRQKLKK---MVNVLRGFVPGGNELNTVGVLDEAVRHLKSLKVEVQNLGVG 237 (241)
Q Consensus 190 RRekI~e---~~~~L~~lVPg~~~~D~asvLdEaI~YLKsLk~qV~~L~~~ 237 (241)
.+..|.+ .++.|+ ........++.+|..|..|+.+++.+.-.
T Consensus 18 l~~~V~~QG~~VR~LK------a~kA~k~~i~~aV~~Ll~LKa~l~~~tg~ 62 (79)
T 2djv_A 18 LMDEVTKQGNIVRELK------AQKADKNEVAAEVAKLLDLKKQLAVAEGK 62 (79)
T ss_dssp HHHHHHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHh------hccCcHhHhhHHHHHHHHHHHHHHHhcCC
Confidence 4444543 455555 22345678899999999999999998543
No 27
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=22.10 E-value=1.2e+02 Score=18.15 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcC
Q 042291 213 TVGVLDEAVRHLKSLKVEVQNLGV 236 (241)
Q Consensus 213 ~asvLdEaI~YLKsLk~qV~~L~~ 236 (241)
-++=|-||-.||..|-++++.-.+
T Consensus 2 lvsgliearkyleqlhrklknckv 25 (26)
T 1xkm_B 2 LVSGLIEARKYLEQLHRKLKNCKV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCC
Confidence 356688999999999999886543
No 28
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=21.40 E-value=51 Score=26.57 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=19.6
Q ss_pred ccCCC-CCCcchhhHHHHHHHHHHHH
Q 042291 203 GFVPG-GNELNTVGVLDEAVRHLKSL 227 (241)
Q Consensus 203 ~lVPg-~~~~D~asvLdEaI~YLKsL 227 (241)
-++|| |.-.+ ..+|+.+++||+.|
T Consensus 218 ~v~pgHg~~~~-~~~i~~~~~~l~~l 242 (243)
T 4hl2_A 218 MIVMSHSAPDS-RAAITHTARMADKL 242 (243)
T ss_dssp EEECSSSCCBC-THHHHHHHHHHHTT
T ss_pred EEEeCCCCcCc-HHHHHHHHHHHHhc
Confidence 68999 55555 78999999999876
No 29
>1y2i_A Hypothetical protein S0862; structural genomics, pentamer, protein structure initiative, PSI, midwest center for structural genomics; 2.30A {Shigella flexneri 2a str} SCOP: d.230.5.1
Probab=20.67 E-value=87 Score=25.16 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhccCCCCCCcchhhHHHHHHH-HHHHHHHHHHHhcCCC
Q 042291 191 RQKLKKMVNVLRGFVPGGNELNTVGVLDEAVR-HLKSLKVEVQNLGVGN 238 (241)
Q Consensus 191 RekI~e~~~~L~~lVPg~~~~D~asvLdEaI~-YLKsLk~qV~~L~~~~ 238 (241)
+.-.+.-+..||+|| ||.-..--.+|++|-+ =|+.|+.++++||.|.
T Consensus 53 ~n~~kd~~a~lr~iv-GG~~~~Y~~~l~~aR~~Al~rm~~~A~~lGAnA 100 (133)
T 1y2i_A 53 ANIFRDFFAGIRDIV-GGRSGAYEKELRKAREIAFEELGSQARALGADA 100 (133)
T ss_dssp HHHHHHHTTTCCSEE-ETTTCTHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred echhhhHhHhhhhhc-CcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 344677788899998 6666677888987764 4788999999999874
No 30
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.12 E-value=1.4e+02 Score=22.71 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=22.2
Q ss_pred CC-CCCcchhhHHHHHHHHHHHHHHHHHHhc
Q 042291 206 PG-GNELNTVGVLDEAVRHLKSLKVEVQNLG 235 (241)
Q Consensus 206 Pg-~~~~D~asvLdEaI~YLKsLk~qV~~L~ 235 (241)
|. |+.+....-|.|+..=|..|+..+..+.
T Consensus 52 P~~GD~~s~~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 52 PQMGDPASLEPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp GGGCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 5555557788888888888888887664
Done!