BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042294
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
Query: 1 MKYWLEGPKTGTVELVANLPGFPDNVRINERGQFWVAIDCCRTAAQEVLSHNPWIRSIYF 60
+KYWLEGPK GT E++ +P P N++ N G FWV ++ E L N
Sbjct: 210 VKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV-------SSSEELDGN-------- 253
Query: 61 RLPIRMSFLARVMGMKMYTVISLFNENGEILEVLEDPRGVVMKLVSEVKEAQGKLWIGTV 120
M G+K F+E G ILEV+ P + +++E G L+IGT+
Sbjct: 254 -----MHGRVDPKGIK-------FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 301
Query: 121 AHNHIATLPY 130
H + L Y
Sbjct: 302 FHGSVGILVY 311
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
Query: 1 MKYWLEGPKTGTVELVANLPGFPDNVRINERGQFWVAIDCCRTAAQEVLSHNPWIRSIYF 60
+KYWLEGPK GT E++ +P P N++ N G FWV ++ E L N R
Sbjct: 210 VKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV-------SSSEELDGNXHGR---- 257
Query: 61 RLPIRMSFLARVMGMKMYTVISLFNENGEILEVLEDPRGVVMKLVSEVKEAQGKLWIGTV 120
G+K F+E G ILEV+ P + +++E G L+IGT+
Sbjct: 258 ---------VDPKGIK-------FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 301
Query: 121 AHNHIATLPY 130
H + L Y
Sbjct: 302 FHGSVGILVY 311
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
Query: 1 MKYWLEGPKTGTVELVANLPGFPDNVRINERGQFWVAIDCCRTAAQEVLSHNPWIRSIYF 60
+KYWLEGPK GT E++ +P P N++ N G FWV ++ E L N
Sbjct: 201 VKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV-------SSSEELDGN-------- 244
Query: 61 RLPIRMSFLARVMGMKMYTVISLFNENGEILEVLEDPRGVVMKLVSEVKEAQGKLWIGTV 120
M G+K F+E G ILEV+ P + +++E G L+IGT+
Sbjct: 245 -----MHGRVDPKGIK-------FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 292
Query: 121 AHNHIATLPY 130
H + L Y
Sbjct: 293 FHGSVGILVY 302
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 9 KTGTVELVANLPGFPDNVRINERGQFWVAIDCC 41
KTG +E+ ++ GF N + R WVA D
Sbjct: 330 KTGGLEIDSDFGGFRVNAELQARSNIWVAGDAA 362
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 9 KTGTVELVANLPGFPDNVRINERGQFWVAIDCC 41
KTG +E+ ++ GF N + R WVA D
Sbjct: 325 KTGGLEIDSDFGGFRVNAELQARSNIWVAGDAA 357
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 5 LEGPKTGTVELVANLPGFPDNVRINERGQFWVAIDCC 41
+E KTG +E+ ++ GF N + R WVA D
Sbjct: 284 VELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAA 320
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 9 KTGTVELVANLPGFPDNVRINERGQFWVAIDCC 41
KTG +E+ ++ GF N + R WVA D
Sbjct: 306 KTGGLEIDSDFGGFRVNAELQARSNIWVAGDAA 338
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 9 KTGTVELVANLPGFPDNVRINERGQFWVAIDCC 41
KTG +E+ ++ GF N + R WVA D
Sbjct: 306 KTGGLEIDSDFGGFRVNAELQARSNIWVAGDAA 338
>pdb|2FTC|D Chain D, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
pdb|3IY9|D Chain D, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
Length = 175
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 57 SIYFRLPIRMSFLARVMGMKMYTVISLFNENGEILEVLEDPRG 99
S Y+ LP+++ R +G+K+ + L ++ I++ LE P G
Sbjct: 64 SYYYMLPMKV----RALGLKVALTVKLAQDDLHIMDSLELPTG 102
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
pdb|3NZQ|B Chain B, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
Length = 666
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 48 VLSHNPWIRSIYF------RLPIRMSFLARVMGMKMYTVISLFNENGEILEVLED----P 97
VL+H RS+ R IR++ + MG K+Y VI +E +L+ E P
Sbjct: 158 VLAHAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVP 217
Query: 98 R-GVVMKLVSE 107
R GV +L S+
Sbjct: 218 RLGVRARLASQ 228
>pdb|1BXC|A Chain A, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|B Chain B, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|C Chain C, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|D Chain D, Xylose Isomerase From Thermus Caldophilus
Length = 387
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 50 SHNPWIRSIYFRLPIRMSFLARVMGMKMYTV 80
S +PW+R+ FR + L +G ++Y V
Sbjct: 105 SRDPWVRAYAFRKSLETMDLGAELGAEIYVV 135
>pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii
pdb|2ID0|B Chain B, Escherichia Coli Rnase Ii
pdb|2ID0|C Chain C, Escherichia Coli Rnase Ii
pdb|2ID0|D Chain D, Escherichia Coli Rnase Ii
Length = 644
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 83 LFNENGEILEVLEDPRGVVMKLVSE 107
+ E GE+L+++ +PR + ++V E
Sbjct: 367 ILGEKGEVLDIVAEPRRIANRIVEE 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,979,914
Number of Sequences: 62578
Number of extensions: 139273
Number of successful extensions: 354
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 22
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)