BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042295
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PW6|A Chain A, Crystal Structure Of Uncharacterized Protein Jw3007 From
Escherichia Coli K12
Length = 271
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 136/234 (58%), Gaps = 12/234 (5%)
Query: 4 FFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTI 63
F+ HGSP ++++L R + K L +P +I+V+SAHW T V TI
Sbjct: 18 LFLGHGSPXNVLEDNLYTRSWQKL---GXTLPRPQAIVVVSAHWFTRGTGVTAXETPPTI 74
Query: 64 YDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYP 123
+DF GFP+ LY YPAPG+P LA+R+ ELL KE G DHG+W L+ YP
Sbjct: 75 HDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKE--AWGFDHGSWGVLIKXYP 132
Query: 124 EANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV-VS 182
+A+IP QLS+ K +H+ G+ LA L+DEG+ ++ SG+ HNL+ +++ GDS
Sbjct: 133 DADIPXVQLSIDSSKPAAWHFEXGRKLAALRDEGIXLVASGNVVHNLRTVKWHGDSSPYP 192
Query: 183 WASEFDCWLKDALL-QGRYED---VNHYEEKAPYGKMAHPSPEHFYPLHVAMGA 232
WA+ F+ ++K L QG E VN+ + + G +++P+PEH+ PL +GA
Sbjct: 193 WATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPLLYVLGA 244
>pdb|3VSG|B Chain B, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSG|D Chain D, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSH|B Chain B, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSH|D Chain D, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSI|B Chain B, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSI|D Chain D, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSJ|B Chain B, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
pdb|3VSJ|D Chain D, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
Length = 312
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 29 KEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPE-----------QLYKLK 77
+E++ KP+ +LV S HW T V + F G PE +++
Sbjct: 45 RERLDAMKPDVLLVHSPHWITSVG-----------HHFLGVPELSGKSVDPIFPNVFRYD 93
Query: 78 YPAPGAPDLAKRVKELLRTSGF-NHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP 136
+ +LA+ E R +G + + K +D+G T L L+ P+ +IPV +S
Sbjct: 94 FSLNVDVELAEACAEEGRKAGLVTKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGIS--- 150
Query: 137 EKDGTYHYNVGKALAPL 153
+ Y+ N + ++ +
Sbjct: 151 ANNSPYYLNTKEGMSEM 167
>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVS|B Chain B, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVU|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVU|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVX|A Chain A, Human Kynurenine Aminotransferase I In Complex With Tris
pdb|3FVX|B Chain B, Human Kynurenine Aminotransferase I In Complex With Tris
Length = 422
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 146 VGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQG 198
+G+ + PL++ V + G G+ +AL +GD V+ FDC+ ++ G
Sbjct: 84 LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG 136
>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
pdb|1W7M|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With L-Phe
Length = 422
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 146 VGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQG 198
+G+ + PL++ V + G G+ +AL +GD V+ FDC+ ++ G
Sbjct: 84 LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG 136
>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Pmp Form
Length = 422
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 146 VGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQG 198
+G+ + PL++ V + G G+ +AL +GD V+ FDC+ ++ G
Sbjct: 84 LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG 136
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 16 DESLQVRHFLKAWKEQVFL--QKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQL 73
DE +R + KE+VF+ +K L + VP +N + +F G E
Sbjct: 99 DERFDMRRI--SPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDE-- 154
Query: 74 YKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKR-----GLDHGAWTPLMLMY 122
PAP +L + +KEL FN V E+ KR L H + +MY
Sbjct: 155 ----LPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMY 204
>pdb|1W36|D Chain D, Recbcd:dna Complex
pdb|1W36|G Chain G, Recbcd:dna Complex
pdb|3K70|D Chain D, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|G Chain G, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 608
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 105 DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGS 163
D LD G T + P+ NI Q S PE + T+ V K+ D LI+ S
Sbjct: 497 DIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS 555
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 131 QLSLQPEKDGTYHYNVGKAL 150
Q+SLQ EKDG +H+ G +L
Sbjct: 26 QVSLQYEKDGAFHHTCGGSL 45
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 131 QLSLQPEKDGTYHYNVGKAL 150
Q+SLQ EKDG +H+ G +L
Sbjct: 13 QVSLQYEKDGAFHHTCGGSL 32
>pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 1172
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 122 YPEANIPVCQLSLQPEKDGTYHYNVGKALA----PLKDEGVLIIGSGSATHNL-----KA 172
Y + +IP C P KDG NVG A P ++G L G G A+ K
Sbjct: 672 YNDVDIPGCWFFKLPHKDGN-SCNVGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKM 730
Query: 173 LQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM 215
+ F ++ +S+ WL + L Y+E+ YG +
Sbjct: 731 ISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYDEEGLYGAI 773
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 113 GAWTPLMLMYPEANIPVCQLSLQPE 137
G WT L Y E NI VC+ +PE
Sbjct: 30 GIWTSKKLGYAETNIGVCESCKKPE 54
>pdb|1BOU|B Chain B, Three-Dimensional Structure Of Ligab
pdb|1BOU|D Chain D, Three-Dimensional Structure Of Ligab
pdb|1B4U|B Chain B, Protocatechuate 4,5-Dioxygenase (Ligab) In Complex With
Protocatechuate (Pca)
pdb|1B4U|D Chain D, Protocatechuate 4,5-Dioxygenase (Ligab) In Complex With
Protocatechuate (Pca)
Length = 302
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 82 GAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGT 141
G PDLA + + L F+ + + +DHG PL +++ E C++ P T
Sbjct: 98 GHPDLAWHIAQSLILDEFDMTIMN-QMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVT 156
Query: 142 YHYNVGKALAPLKDE------------GVLIIGSGSATHNLKA 172
Y GK L D V + G+G +H L+
Sbjct: 157 YPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQG 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,659,958
Number of Sequences: 62578
Number of extensions: 388914
Number of successful extensions: 970
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 15
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)