BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042295
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q949R4|DIOXL_ARATH 4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana
GN=At4g15093 PE=2 SV=1
Length = 269
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/254 (70%), Positives = 206/254 (81%), Gaps = 5/254 (1%)
Query: 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQND 61
+TFF+SHGSPTL ID+SL+ R F K+W ++V QKP SILVISAHW+T P+VN V +N+
Sbjct: 6 QTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNTVLRNN 65
Query: 62 TIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELL-RTSGFNHVKEDTKRGLDHGAWTPLML 120
TI+DF GFP+ +YKLKY APGA +L KRVKELL + G V EDTKRGLDHGAW PLML
Sbjct: 66 TIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPLML 125
Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQF---DG 177
MYPEA+IP+CQLS+Q ++G+YHYN+GKALA LKDEGVLIIGSGSATHNL+ L F DG
Sbjct: 126 MYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDFNITDG 185
Query: 178 DSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDA 237
S V WA EFD WL+D+LLQGRY DVN +EEKAP KMAHP PEH YPLHV MGAAG DA
Sbjct: 186 -SPVPWALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGAAGGDA 244
Query: 238 KAEQIHQSWQLCSL 251
KAEQIH SWQL +L
Sbjct: 245 KAEQIHTSWQLGTL 258
>sp|Q7XA48|DODA_PORGR 4,5-DOPA dioxygenase extradiol OS=Portulaca grandiflora GN=DODA
PE=2 SV=1
Length = 271
Score = 316 bits (809), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 153/260 (58%), Positives = 189/260 (72%), Gaps = 1/260 (0%)
Query: 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQND 61
E+FF+SHG+P + DES R+FL WK+ VF KP SILV+SAHWETDVP V+ + +
Sbjct: 11 ESFFLSHGNPAMLADESFIARNFLLGWKKNVFPVKPKSILVVSAHWETDVPCVSAGQYPN 70
Query: 62 TIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLM 121
IYDF P ++++KYPAPG P LAKRV+ELL GF K D +RG DH +W PL +M
Sbjct: 71 VIYDFTEVPASMFQMKYPAPGCPKLAKRVQELLIAGGFKSAKLDEERGFDHSSWVPLSMM 130
Query: 122 YPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSVV 181
PEA+IPVCQLS+QP D T+H+NVG+ALAPLK EGVL IGSG A H D V
Sbjct: 131 CPEADIPVCQLSVQPGLDATHHFNVGRALAPLKGEGVLFIGSGGAVHPSDDTPHWFDGVA 190
Query: 182 SWASEFDCWLKDALLQGRYEDVNHYEEKAPYG-KMAHPSPEHFYPLHVAMGAAGEDAKAE 240
WA+EFD WL+DALL+GRYEDVN+Y+ KAP G K+AHP PEHF PLHVAMGA GE +KAE
Sbjct: 191 PWAAEFDQWLEDALLEGRYEDVNNYQTKAPEGWKLAHPIPEHFLPLHVAMGAGGEKSKAE 250
Query: 241 QIHQSWQLCSLSCSSYKFTA 260
I+++W +L +SYKFT+
Sbjct: 251 LIYRTWDHGTLGYASYKFTS 270
>sp|P24197|YGID_ECOLI Uncharacterized protein YgiD OS=Escherichia coli (strain K12)
GN=ygiD PE=1 SV=3
Length = 262
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 12/237 (5%)
Query: 1 METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQN 60
M F+ HGSP ++++L R + K + L +P +I+V+SAHW T V +
Sbjct: 6 MPALFLGHGSPMNVLEDNLYTRSWQKL---GMTLPRPQAIVVVSAHWFTRGTGVTAMETP 62
Query: 61 DTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML 120
TI+DF GFP+ LY YPAPG+P LA+R+ ELL KE G DHG+W L+
Sbjct: 63 PTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKE--AWGFDHGSWGVLIK 120
Query: 121 MYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLKALQFDGDSV 180
MYP+A+IP+ QLS+ K +H+ +G+ LA L+DEG++++ SG+ HNL+ +++ GDS
Sbjct: 121 MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS 180
Query: 181 -VSWASEFDCWLKDALL-QGRYED---VNHYEEKAPYGKMAHPSPEHFYPLHVAMGA 232
WA+ F+ ++K L QG E VN+ + + G +++P+PEH+ PL +GA
Sbjct: 181 PYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPLLYVLGA 235
>sp|O74741|DIOXL_SCHPO 4,5-DOPA dioxygenase extradiol-like protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC1709.16c PE=3
SV=2
Length = 297
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 24/261 (9%)
Query: 3 TFFISHGSPTLPI-----DESLQVRHFLKAWKEQVFLQ---------KPNSILVISAHWE 48
+++HGSP L + DE L Q Q +P I+V SAH+E
Sbjct: 25 ALYLAHGSPFLMLPQSSDDEVFSNDSKLGGLHYQFLEQLGPFLLEKFRPKGIIVFSAHYE 84
Query: 49 T--DVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDT 106
+ V + +N YD+YGFP+ LY++K+ + G+ +A ++ L+
Sbjct: 85 SRGSVEVYSRDDENPLFYDYYGFPDYLYQIKFHSKGSKRIADQIISALKEYQIPAKTVSG 144
Query: 107 KRGLDHGAWTPLMLMYPEA-NIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGS 165
RGLDHG + P +M+P+ NIP+ ++S+ D Y VG+AL L+ E LI+ G
Sbjct: 145 DRGLDHGVFVPFKIMFPDGLNIPLIEVSMH-TLDPMQLYKVGQALQSLRKE-YLIVSGGL 202
Query: 166 ATHNLKALQ-FDGDSVVSWASEFDCWLKDALLQGRYED-VNHY--EEKAPYGKMAHPSPE 221
H + L F+ D+ EF + A+ + D +N + PY + AHP E
Sbjct: 203 NIHTFEDLSAFNEDTAADGYKEFQLDILKAIETDKQNDRLNKLLGLQLHPYFRKAHPREE 262
Query: 222 HFYPLHVAMGAAGEDAKAEQI 242
HF PL+VA G G K++ +
Sbjct: 263 HFVPLYVAAG-LGSSGKSKVV 282
>sp|B7K0A2|DNLJ_CYAP8 DNA ligase OS=Cyanothece sp. (strain PCC 8801) GN=ligA PE=3 SV=1
Length = 674
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 35/131 (26%)
Query: 13 LPIDESLQVR-HFLKAWKEQVFLQKPNSILVIS--------AHWET---DVPTVN---VV 57
LP D SL + L+ K+ FL PN L + HWET D+P + VV
Sbjct: 232 LPEDNSLSSQWESLEWLKKMGFLVNPNCQLCPTLEAVADYFRHWETARHDLPYMTDGVVV 291
Query: 58 RQND-TIYDFYGFPEQLYK----LKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDH 112
+ ND + + GF ++ + LKYPA AP RVKE++ G
Sbjct: 292 KINDYALQNQLGFTQKFPRWAIALKYPAEEAP---TRVKEIIVNVGRT------------ 336
Query: 113 GAWTPLMLMYP 123
GA TP+ +M P
Sbjct: 337 GAVTPMAIMEP 347
>sp|Q92076|DPOG1_CHICK DNA polymerase subunit gamma-1 (Fragment) OS=Gallus gallus GN=POLG
PE=2 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 122 YPEANIPVCQLSLQPEKDGTYHYNVGKALA----PLKDEGVLIIGSGSATHNLKALQFDG 177
Y + NIP C P KDG + NVG A P ++G L G TH +AL+ +
Sbjct: 151 YNDVNIPGCWFFKLPHKDGNEN-NVGSPFAKDFLPRMEDGTLRAAVGR-THGTRALEIN- 207
Query: 178 DSVVSW-------ASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM 215
V W +S+ WLK L Y E+ YG +
Sbjct: 208 KMVSFWRNAHKRVSSQVVVWLKKGELPRAVTRHPAYSEEEDYGAI 252
>sp|P54099|DPOG1_MOUSE DNA polymerase subunit gamma-1 OS=Mus musculus GN=Polg PE=1 SV=2
Length = 1239
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 122 YPEANIPVCQLSLQPEKDGTYHYNVGKALA----PLKDEGVLIIGSGSATHNL-----KA 172
Y + NIP C P KDG +YNVG A P ++G L G G A+ K
Sbjct: 718 YNDVNIPGCWFFKLPHKDGN-NYNVGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKM 776
Query: 173 LQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM 215
+ F ++ +S+ WL + L ++E+ YG +
Sbjct: 777 ISFWRNAHKRISSQMVVWLPRSALPRVVTRHPAFDEEGHYGAI 819
>sp|Q8TGB2|GPI7_CANAL GPI ethanolamine phosphate transferase 2 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=LAS21 PE=3 SV=2
Length = 892
Score = 32.7 bits (73), Expect = 2.8, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 131 QLSLQPEKDGTYHYNVGKALAPLKDEG-----VLIIGSGSATHNLKALQF--DGDSVVSW 183
Q SL P T+ ++ GK L +KD G +++ + S + + K LQ+ DG+++ W
Sbjct: 558 QGSLVP----TFAFSFGKRLPDVKDPGGLISFIVVFVATSVSFSFKLLQYYIDGNTIPKW 613
Query: 184 ASEFDCWL 191
+ F W+
Sbjct: 614 LNRFLLWI 621
>sp|A9VRK8|FENR1_BACWK Ferredoxin--NADP reductase 1 OS=Bacillus weihenstephanensis (strain
KBAB4) GN=BcerKBAB4_0332 PE=3 SV=1
Length = 349
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 148 KALAPLKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYE 207
K+L KD+ V+I G G +S + WA+E + K L R E+++ +E
Sbjct: 146 KSLKRFKDKTVIISGGG-------------NSAIDWANELEPIAKKVYLTYRKEELSGHE 192
Query: 208 EKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQI-----HQSWQLCSLSC 253
A ++ + S E F+ + AG++ +A + H++ ++ LS
Sbjct: 193 --AQVKQLMNSSAECFFNTSITKLIAGDNHEAIEYVELTNHETGEVSHLSI 241
>sp|A0R1T3|MHPB_MYCS2 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid
1,2-dioxygenase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=mhpB PE=3 SV=2
Length = 313
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 79 PAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN----IPV----C 130
P P D+A E L SG + + T +DHG PL ++ +A +P+
Sbjct: 83 PLPVDADIANACAESLWESGVD-IAISTAMDVDHGTVQPLQELFGDATARPVVPIFINSV 141
Query: 131 QLSLQP-EKDGTYHYNVGKALAPLKDEGVLIIGSGSATHN 169
L P + VG LA L D+ VLI+GSG +H+
Sbjct: 142 ATPLGPLSRSRALGAAVGTFLATL-DKRVLIVGSGGLSHD 180
>sp|Q9QYV8|DPOG1_RAT DNA polymerase subunit gamma-1 OS=Rattus norvegicus GN=Polg PE=2
SV=1
Length = 1216
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 122 YPEANIPVCQLSLQPEKDGTYHYNVGKALA----PLKDEGVLIIGSGSATHNLKALQFDG 177
Y + +IP C P KDG +YNVG A P ++G L G G A +AL+ +
Sbjct: 716 YNDVDIPGCWFFKLPHKDGN-NYNVGSPFAKDFLPKMEDGTLQAGPGGA-RGPRALEIN- 772
Query: 178 DSVVSW-------ASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM 215
+ W +S+ WL + L ++E++ YG +
Sbjct: 773 KMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPSFDEESHYGAI 817
>sp|Q4R2Z8|ZN541_MACFA Zinc finger protein 541 (Fragment) OS=Macaca fascicularis GN=ZNF541
PE=2 SV=2
Length = 804
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 85 DLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQ----LSLQPEKDG 140
+ K ++++LR G H K+ LD A PL++ + +PV + ++++ EKDG
Sbjct: 326 EFCKPLRQVLRPEGDRHSPPGAKKPLDSTAAAPLVVPHSIPVVPVTRHVGSMAMEQEKDG 385
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,138,303
Number of Sequences: 539616
Number of extensions: 4856112
Number of successful extensions: 10042
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10027
Number of HSP's gapped (non-prelim): 16
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)