Query 042295
Match_columns 264
No_of_seqs 145 out of 1238
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3384 Aromatic ring-opening 100.0 2.3E-72 4.9E-77 491.0 22.0 257 1-260 9-268 (268)
2 PRK10628 LigB family dioxygena 100.0 3E-72 6.4E-77 493.4 22.8 242 12-259 1-246 (246)
3 cd07363 45_DOPA_Dioxygenase Th 100.0 7.5E-71 1.6E-75 490.6 23.0 252 2-258 1-253 (253)
4 PF02900 LigB: Catalytic LigB 100.0 3.7E-61 8.1E-66 432.1 5.3 251 2-259 1-272 (272)
5 cd07373 2A5CPDO_A The alpha su 100.0 2.1E-56 4.5E-61 401.4 20.2 236 3-249 5-261 (271)
6 TIGR02298 HpaD_Fe 3,4-dihydrox 100.0 1.5E-52 3.3E-57 378.0 20.8 222 19-244 30-266 (282)
7 cd07370 HPCD The Class III ext 100.0 3.6E-52 7.7E-57 375.7 21.9 253 2-258 12-278 (280)
8 cd07362 HPCD_like Class III ex 100.0 4.5E-51 9.8E-56 366.9 20.5 234 3-242 3-257 (272)
9 cd07371 2A5CPDO_AB The alpha a 100.0 4E-51 8.6E-56 366.7 19.8 242 4-249 3-258 (268)
10 cd07952 ED_3B_like Uncharacter 100.0 2E-49 4.3E-54 353.6 22.5 227 3-244 2-243 (256)
11 cd07320 Extradiol_Dioxygenase_ 100.0 1.1E-49 2.4E-54 355.1 19.8 247 3-258 2-260 (260)
12 cd07367 CarBb CarBb is the B s 100.0 9.7E-46 2.1E-50 331.7 19.8 222 3-243 7-251 (268)
13 cd07359 PCA_45_Doxase_B_like S 100.0 5.6E-45 1.2E-49 327.3 20.3 225 3-242 5-253 (271)
14 PRK03881 hypothetical protein; 100.0 6.9E-44 1.5E-48 341.8 23.3 245 3-260 6-272 (467)
15 cd07372 2A5CPDO_B The beta sub 100.0 1.9E-43 4.2E-48 320.0 19.8 236 3-245 6-275 (294)
16 PRK13372 pcmA protocatechuate 100.0 2.1E-43 4.6E-48 329.7 18.6 221 20-254 179-434 (444)
17 cd07364 PCA_45_Dioxygenase_B S 100.0 2.5E-43 5.3E-48 317.0 18.1 206 19-235 31-253 (277)
18 cd07949 PCA_45_Doxase_B_like_1 100.0 5.5E-43 1.2E-47 314.6 18.8 200 21-235 33-252 (276)
19 cd07368 PhnC_Bs_like PhnC is a 100.0 6.3E-43 1.4E-47 314.8 17.8 225 3-243 7-260 (277)
20 PRK13366 protocatechuate 4,5-d 100.0 7.8E-43 1.7E-47 314.2 17.5 237 3-255 7-275 (284)
21 cd07951 ED_3B_N_AMMECR1 The N- 100.0 1.5E-42 3.4E-47 308.9 18.8 233 5-249 1-248 (256)
22 PRK13364 protocatechuate 4,5-d 100.0 4.2E-41 9E-46 302.3 21.2 201 20-235 32-252 (278)
23 PRK13358 protocatechuate 4,5-d 100.0 7.3E-41 1.6E-45 300.4 19.6 222 3-243 7-251 (269)
24 cd07950 Gallate_Doxase_N The N 100.0 9.4E-41 2E-45 300.4 19.4 218 4-235 8-253 (277)
25 cd07369 PydA_Rs_like PydA is a 100.0 7.4E-40 1.6E-44 299.7 21.1 227 4-242 8-311 (329)
26 cd07366 3MGA_Dioxygenase Subun 100.0 6.2E-39 1.3E-43 293.7 19.2 207 19-243 69-307 (328)
27 PRK13365 protocatechuate 4,5-d 100.0 1.1E-38 2.5E-43 287.1 19.6 205 19-235 31-253 (279)
28 PRK13367 protocatechuate 4,5-d 100.0 1.6E-38 3.5E-43 296.7 19.2 203 20-235 32-253 (420)
29 PRK13363 protocatechuate 4,5-d 100.0 2.6E-38 5.6E-43 290.2 19.5 207 19-243 71-311 (335)
30 cd07365 MhpB_like Subunit B of 100.0 5.6E-38 1.2E-42 286.0 20.2 221 3-235 5-283 (310)
31 PRK13370 mhpB 3-(2,3-dihydroxy 100.0 6.7E-38 1.5E-42 285.8 20.0 218 4-233 6-281 (313)
32 PRK13373 putative dioxygenase; 100.0 2E-34 4.4E-39 261.2 17.4 213 20-236 30-306 (344)
33 COG3885 Uncharacterized conser 99.9 5.7E-23 1.2E-27 175.6 14.3 223 3-242 5-243 (261)
34 cd07361 MEMO_like Memo (mediat 99.9 1.2E-20 2.7E-25 169.1 17.3 204 3-244 38-245 (266)
35 PRK00782 hypothetical protein; 99.8 2.5E-17 5.3E-22 147.9 19.8 190 36-259 63-266 (267)
36 COG1355 Predicted dioxygenase 99.0 2.5E-08 5.4E-13 88.8 14.8 177 35-244 73-257 (279)
37 PF01875 Memo: Memo-like prote 98.8 8.6E-09 1.9E-13 93.1 6.1 186 34-243 59-255 (276)
38 KOG3086 Predicted dioxygenase 95.7 0.056 1.2E-06 47.8 8.1 101 126-233 148-254 (296)
39 TIGR02017 hutG_amidohyd N-form 83.4 19 0.0004 32.4 11.1 105 35-153 136-253 (263)
40 PRK03995 hypothetical protein; 82.8 18 0.0004 32.6 10.7 114 36-170 63-193 (267)
41 PRK05723 flavodoxin; Provision 81.1 6.8 0.00015 32.1 6.8 78 83-168 14-97 (151)
42 PF04414 tRNA_deacylase: D-ami 79.9 12 0.00025 32.7 8.2 116 34-170 10-142 (213)
43 PRK09004 FMN-binding protein M 76.6 15 0.00033 29.7 7.6 92 83-193 15-111 (146)
44 PRK09271 flavodoxin; Provision 76.1 9.8 0.00021 31.2 6.4 79 84-168 15-98 (160)
45 PRK14866 hypothetical protein; 75.0 33 0.00071 33.4 10.4 116 36-170 69-197 (451)
46 TIGR01370 cysRS possible cyste 68.9 19 0.00042 33.3 7.1 91 20-110 188-309 (315)
47 PRK13193 pyrrolidone-carboxyla 67.3 39 0.00085 29.3 8.3 79 23-105 47-134 (209)
48 PRK08105 flavodoxin; Provision 66.0 34 0.00073 27.8 7.4 92 83-193 15-113 (149)
49 PRK10991 fucI L-fucose isomera 64.7 30 0.00065 34.6 7.8 111 25-164 66-181 (588)
50 PF05013 FGase: N-formylglutam 64.5 8.7 0.00019 33.3 3.8 51 82-136 166-217 (222)
51 TIGR01089 fucI L-fucose isomer 64.1 35 0.00076 34.1 8.1 113 25-164 65-180 (587)
52 COG2039 Pcp Pyrrolidone-carbox 54.9 1.1E+02 0.0023 26.5 8.5 83 21-108 45-137 (207)
53 PF06506 PrpR_N: Propionate ca 53.6 14 0.0003 30.8 3.0 100 82-198 17-125 (176)
54 cd03409 Chelatase_Class_II Cla 53.2 21 0.00045 26.3 3.7 27 3-34 2-28 (101)
55 PRK06703 flavodoxin; Provision 50.7 44 0.00096 26.7 5.6 75 83-167 15-94 (151)
56 cd03556 L-fucose_isomerase L-f 49.3 37 0.00081 33.9 5.6 115 25-164 62-177 (584)
57 cd03416 CbiX_SirB_N Sirohydroc 47.2 36 0.00077 25.2 4.2 29 3-37 2-30 (101)
58 PF13607 Succ_CoA_lig: Succiny 46.9 74 0.0016 25.6 6.2 113 83-206 10-134 (138)
59 cd00501 Peptidase_C15 Pyroglut 43.3 1.6E+02 0.0035 24.8 8.1 109 23-135 47-168 (194)
60 cd03413 CbiK_C Anaerobic cobal 43.3 46 0.001 25.3 4.3 28 2-36 2-29 (103)
61 PRK00923 sirohydrochlorin coba 40.8 56 0.0012 25.3 4.6 30 2-37 3-32 (126)
62 cd03414 CbiX_SirB_C Sirohydroc 40.2 60 0.0013 24.7 4.6 29 3-37 3-31 (117)
63 cd03415 CbiX_CbiC Archaeal sir 40.0 52 0.0011 26.1 4.3 26 2-33 2-27 (125)
64 PRK07308 flavodoxin; Validated 39.8 1.2E+02 0.0027 23.9 6.6 74 83-166 15-93 (146)
65 PRK10953 cysJ sulfite reductas 39.7 2.2E+02 0.0048 28.7 9.6 78 83-168 75-158 (600)
66 TIGR02717 AcCoA-syn-alpha acet 38.9 3.7E+02 0.0079 25.9 13.7 119 83-206 159-283 (447)
67 TIGR01931 cysJ sulfite reducta 37.9 1.1E+02 0.0023 30.9 7.1 78 84-169 73-156 (597)
68 cd03412 CbiK_N Anaerobic cobal 37.6 58 0.0012 25.7 4.2 33 3-41 3-35 (127)
69 TIGR00504 pyro_pdase pyrogluta 37.5 2.7E+02 0.0058 24.1 8.7 29 21-49 43-71 (212)
70 PRK13197 pyrrolidone-carboxyla 36.8 2E+02 0.0044 24.9 7.8 26 23-48 48-73 (215)
71 PRK13194 pyrrolidone-carboxyla 35.7 2.3E+02 0.0051 24.4 8.0 79 23-105 47-134 (208)
72 PF12500 TRSP: TRSP domain C t 35.6 35 0.00075 28.3 2.7 27 142-168 43-70 (155)
73 PRK13195 pyrrolidone-carboxyla 34.8 2.5E+02 0.0055 24.6 8.1 79 23-105 48-138 (222)
74 cd00491 4Oxalocrotonate_Tautom 34.3 76 0.0017 20.7 3.8 26 128-153 1-26 (58)
75 PF00258 Flavodoxin_1: Flavodo 33.4 1.1E+02 0.0023 23.9 5.2 95 84-193 11-116 (143)
76 PF01650 Peptidase_C13: Peptid 32.9 78 0.0017 28.3 4.7 41 3-46 111-159 (256)
77 cd07409 MPP_CD73_N CD73 ecto-5 32.5 53 0.0011 29.4 3.6 26 22-48 168-193 (281)
78 PF04918 DltD_M: DltD central 31.8 19 0.00041 29.9 0.5 25 25-51 15-39 (163)
79 TIGR03565 alk_sulf_monoox alka 31.5 1.1E+02 0.0023 28.4 5.5 88 81-169 23-112 (346)
80 PF01488 Shikimate_DH: Shikima 31.2 13 0.00029 29.5 -0.5 19 150-168 7-25 (135)
81 COG4569 MhpF Acetaldehyde dehy 31.1 20 0.00043 31.4 0.6 17 154-170 3-19 (310)
82 cd07405 MPP_UshA_N Escherichia 29.4 63 0.0014 29.1 3.5 27 22-49 159-185 (285)
83 PRK13011 formyltetrahydrofolat 29.2 1.5E+02 0.0033 26.9 6.0 79 81-171 15-104 (286)
84 PF13812 PPR_3: Pentatricopept 28.5 73 0.0016 17.8 2.6 21 80-100 13-33 (34)
85 PRK08564 5'-methylthioadenosin 27.7 2.7E+02 0.0058 25.1 7.2 18 83-100 138-155 (267)
86 COG2820 Udp Uridine phosphoryl 27.4 88 0.0019 27.9 3.9 80 2-99 59-147 (248)
87 PLN02757 sirohydrochlorine fer 27.2 1.1E+02 0.0025 25.0 4.4 26 3-34 16-41 (154)
88 COG3958 Transketolase, C-termi 27.1 1.2E+02 0.0025 28.0 4.8 119 20-170 84-207 (312)
89 cd07410 MPP_CpdB_N Escherichia 26.7 80 0.0017 28.0 3.7 28 22-50 169-196 (277)
90 PRK02289 4-oxalocrotonate taut 26.5 1.2E+02 0.0026 20.3 3.8 27 127-153 1-27 (60)
91 cd07406 MPP_CG11883_N Drosophi 26.4 84 0.0018 27.7 3.8 28 20-48 155-182 (257)
92 PF00850 Hist_deacetyl: Histon 26.1 2.1E+02 0.0046 26.1 6.5 32 137-168 262-296 (311)
93 cd01537 PBP1_Repressors_Sugar_ 25.5 3.5E+02 0.0076 22.3 7.4 79 83-165 40-128 (264)
94 KOG2882 p-Nitrophenyl phosphat 24.9 2.2E+02 0.0048 26.3 6.1 76 88-167 115-191 (306)
95 COG4031 Predicted metal-bindin 24.6 93 0.002 26.8 3.4 33 16-48 53-86 (227)
96 PRK08621 galactose-6-phosphate 24.4 91 0.002 25.4 3.3 54 85-165 13-67 (142)
97 PF01470 Peptidase_C15: Pyrogl 24.3 2.2E+02 0.0047 24.4 5.8 80 22-105 46-134 (202)
98 PRK01964 4-oxalocrotonate taut 24.0 83 0.0018 21.3 2.6 27 127-153 1-27 (64)
99 TIGR00107 deoD purine-nucleosi 23.8 4.8E+02 0.01 22.6 8.4 86 2-99 53-143 (232)
100 cd07491 Peptidases_S8_7 Peptid 23.6 80 0.0017 27.8 3.1 46 125-170 101-149 (247)
101 COG0493 GltD NADPH-dependent g 23.6 1.1E+02 0.0023 29.9 4.1 63 38-109 124-197 (457)
102 PRK15174 Vi polysaccharide exp 23.4 39 0.00085 34.2 1.2 48 84-134 532-592 (656)
103 TIGR03559 F420_Rv3520c probabl 23.3 4E+02 0.0087 24.3 7.8 85 83-169 11-98 (325)
104 KOG2017 Molybdopterin synthase 22.9 84 0.0018 29.8 3.1 44 124-167 25-78 (427)
105 TIGR01753 flav_short flavodoxi 22.8 3.5E+02 0.0076 20.6 7.0 76 83-168 12-93 (140)
106 TIGR01470 cysG_Nterm siroheme 22.8 2.2E+02 0.0047 24.3 5.5 122 74-206 70-199 (205)
107 PRK02220 4-oxalocrotonate taut 22.7 99 0.0021 20.5 2.8 27 127-153 1-27 (61)
108 PRK05948 precorrin-2 methyltra 22.5 1.7E+02 0.0037 25.7 4.9 81 81-167 13-104 (238)
109 TIGR02778 ligD_pol DNA polymer 22.5 2.8E+02 0.0062 24.7 6.2 51 85-153 134-185 (245)
110 TIGR01918 various_sel_PB selen 22.4 1.2E+02 0.0027 29.3 4.2 51 84-134 322-372 (431)
111 PF02641 DUF190: Uncharacteriz 22.2 1.1E+02 0.0024 23.1 3.2 74 82-160 17-94 (101)
112 PF02684 LpxB: Lipid-A-disacch 22.1 1.2E+02 0.0026 28.7 4.1 27 22-48 68-95 (373)
113 COG2257 Uncharacterized homolo 22.0 82 0.0018 23.7 2.3 27 79-106 26-52 (92)
114 COG3737 Uncharacterized conser 21.8 74 0.0016 25.3 2.1 24 143-166 57-80 (127)
115 PF02844 GARS_N: Phosphoribosy 21.8 24 0.00052 27.0 -0.6 15 157-171 2-16 (100)
116 PRK02399 hypothetical protein; 21.7 1.6E+02 0.0035 28.3 4.8 53 139-197 314-370 (406)
117 PRK00745 4-oxalocrotonate taut 21.6 1.1E+02 0.0023 20.4 2.8 27 127-153 1-27 (62)
118 cd07408 MPP_SA0022_N Staphyloc 21.5 1.2E+02 0.0026 26.6 3.8 28 22-50 156-184 (257)
119 PF04914 DltD_C: DltD C-termin 21.2 70 0.0015 25.6 2.0 58 24-104 37-94 (130)
120 PRK10637 cysG siroheme synthas 21.1 4.2E+02 0.009 25.6 7.7 69 76-153 75-146 (457)
121 PRK01021 lpxB lipid-A-disaccha 21.0 1.3E+02 0.0028 30.5 4.2 28 21-48 295-323 (608)
122 PRK06756 flavodoxin; Provision 20.9 3.7E+02 0.008 21.1 6.3 75 84-167 16-95 (148)
123 PF10035 DUF2179: Uncharacteri 20.9 1.2E+02 0.0025 20.0 2.8 21 25-45 29-49 (55)
124 cd07412 MPP_YhcR_N Bacillus su 20.9 1.2E+02 0.0025 27.3 3.6 27 22-49 177-203 (288)
125 PRK13196 pyrrolidone-carboxyla 20.9 5.5E+02 0.012 22.1 8.3 82 22-105 47-137 (211)
126 TIGR03107 glu_aminopep glutamy 20.9 5.2E+02 0.011 24.2 8.0 68 80-153 261-337 (350)
127 TIGR01754 flav_RNR ribonucleot 20.6 3.1E+02 0.0068 21.4 5.7 74 84-166 15-92 (140)
128 PRK00719 alkanesulfonate monoo 20.5 2.4E+02 0.0052 26.5 5.8 86 82-171 25-115 (378)
129 TIGR00013 taut 4-oxalocrotonat 20.5 1.9E+02 0.0041 19.2 3.8 26 128-153 1-27 (63)
130 cd07403 MPP_TTHA0053 Thermus t 20.0 1.2E+02 0.0026 23.7 3.1 41 4-46 59-99 (129)
No 1
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-72 Score=490.95 Aligned_cols=257 Identities=41% Similarity=0.748 Sum_probs=242.6
Q ss_pred CcEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCC-CeEEEecCCCccCCCCCCccccccccCC
Q 042295 1 METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDV-PTVNVVRQNDTIYDFYGFPEQLYKLKYP 79 (264)
Q Consensus 1 ~p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~-~~i~~~~~~~~~~D~~gfP~~~y~~~y~ 79 (264)
||++|+|||+|++++++ +++.+++++||+++++.+||+|||+|+||.+++ ..|++.++++++|||||||+++|+++|+
T Consensus 9 ~p~LflshgsP~~~~~~-n~~~~~l~~lG~~~~e~rp~tIiV~SaHw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~Y~ 87 (268)
T COG3384 9 MPALFLSHGSPMLALED-NAATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVTASEHPETIHDFYGFPDELYDVKYP 87 (268)
T ss_pred ccceeecCCCcccccCc-cHHHHHHHHHHHhhhhcCCCEEEEEeceEEecCceeEEcccCcceeeccCCCCHHHHhccCC
Confidence 69999999999999954 899999999999999899999999999999987 7899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeE
Q 042295 80 APGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVL 159 (264)
Q Consensus 80 ~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~ 159 (264)
++|+||||++|++++.+.||+ .. .++||||||+|+||++|||++|+||||||+++.++++.+|++|++|++||+|.|+
T Consensus 88 a~G~peLa~~i~~~l~~~~v~-a~-~~~~gLDHGtwvpL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree~vl 165 (268)
T COG3384 88 APGSPELAQRIVELLAKLGVP-AD-APSWGLDHGTWVPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEGVL 165 (268)
T ss_pred CCCCHHHHHHHHHHhcccCcc-cc-CCccCCCccceeeehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999994 43 3789999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccccccccCCCCCcchHHHHHHHHHHHHH--cCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCCC
Q 042295 160 IIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALL--QGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDA 237 (264)
Q Consensus 160 iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~--~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~~ 237 (264)
|||||+++|||+...+...+..+|+++||+|+++.|. .||.+.++++.+..|.+.+++|+++|++|+++++|+.+.+.
T Consensus 166 ilaSGs~~H~l~~~~~~~~~~~~~a~~F~~~~~~~v~~~~~d~~~~~~~~~~~p~~~~~~~~~eH~~pL~~~lG~~~~~~ 245 (268)
T COG3384 166 ILASGSLVHNLRLLKWAGDGPYPWAREFDEWMKKNVVLWGGDFAPLCNYLPLYPDALIAEPGEEHLLPLLYALGAWDGDE 245 (268)
T ss_pred EEecCcceeehhhhhhcCCCCChhHHHHHHHHHHHHHHhccchHHHhHhhhhchHhhhCCCCccchHHHHHHhhccCCCC
Confidence 9999999999999988666678999999999999996 45999999997778999999999999999999999998878
Q ss_pred ceeEeccceeccceeeeEEEecc
Q 042295 238 KAEQIHQSWQLCSLSCSSYKFTA 260 (264)
Q Consensus 238 ~~~~~~~~~~~~~~s~~~~~~~~ 260 (264)
+++++.+.+.++++||.+.+|..
T Consensus 246 ~~ei~~d~~~~~s~sm~~~~F~~ 268 (268)
T COG3384 246 KVEIVTDLFESGSLSMLNAQFPE 268 (268)
T ss_pred CeeEEecccccccceeEEEecCC
Confidence 99999999999999999999964
No 2
>PRK10628 LigB family dioxygenase; Provisional
Probab=100.00 E-value=3e-72 Score=493.44 Aligned_cols=242 Identities=33% Similarity=0.618 Sum_probs=220.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHH
Q 042295 12 TLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVK 91 (264)
Q Consensus 12 ~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~ 91 (264)
++++ +++++.++|+++++++ .+|++|||||+||++..+.|+.+++++++|||||||+++|+++|+++|+|+||++|+
T Consensus 1 ~~~l-e~~~~~~~l~~lg~~l--~~PkaIlvvSAHW~t~~~~v~~~~~p~~i~DF~GFP~elY~~~Ypa~G~p~LA~~i~ 77 (246)
T PRK10628 1 MNVL-EDNLYTRAWRTLGETL--PRPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSPALAQRLV 77 (246)
T ss_pred Cccc-cccHHHHHHHHHHHhC--CCCCEEEEEcCCcCCCCCcEEecCCCCcccCCCCCCHHHeeecCCCCCCHHHHHHHH
Confidence 3556 4578999999999986 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEEEecCCccccc
Q 042295 92 ELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSATHNLK 171 (264)
Q Consensus 92 ~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iIaSG~lsH~l~ 171 (264)
+.|++.|+. ..+.+||||||+||||++|||++||||||||++...+++.||+||++|++|||++|+|||||+++|||+
T Consensus 78 ~ll~~~~~~--~~~~~rGlDHG~WvpL~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLIigSG~~~HNL~ 155 (246)
T PRK10628 78 ELLAPVPVT--LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLR 155 (246)
T ss_pred HHhhhcCcc--cCCcccCcccchhhhhhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEEEecCccccchh
Confidence 999988872 233459999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccC-CCCCcchHHHHHHHHHHHHHcC-C--HHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCCCceeEecccee
Q 042295 172 ALQFD-GDSVVSWASEFDCWLKDALLQG-R--YEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQIHQSWQ 247 (264)
Q Consensus 172 ~~~~~-~~~~~~~~~~FD~~~~~~l~~g-d--~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~~~~~~~~~~~~ 247 (264)
...+. .....+|+.+||+|+.++|+++ | .++|++|++ .|+++.||||+|||+||++++||++.+++.+++|++|+
T Consensus 156 ~~~~~~~~~~~~wa~~F~~wl~~~l~~~~~~r~~~L~~~~~-~p~a~~ahPt~EH~lPL~~alGAa~~~~~~~~~~~~~~ 234 (246)
T PRK10628 156 TVKWHGDSSPYPWAESFNQFVKANLTWQGPVEQHPLVNYLQ-HEGGALSNPTPEHYLPLLYVLGAWDGKEPISIPVDGIE 234 (246)
T ss_pred hhcccCCCCCchHHHHHHHHHHHHHhcCccchHHHHHHHHh-CcChhhcCCChHHHHHHHHHhcCCCCCCCceeeecccc
Confidence 76542 2345689999999999999944 6 999999954 59999999999999999999999876666789999999
Q ss_pred ccceeeeEEEec
Q 042295 248 LCSLSCSSYKFT 259 (264)
Q Consensus 248 ~~~~s~~~~~~~ 259 (264)
+||+||+||+|+
T Consensus 235 ~gslsm~s~~f~ 246 (246)
T PRK10628 235 MGSLSMLSVQVG 246 (246)
T ss_pred cccceeEEEEeC
Confidence 999999999996
No 3
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=100.00 E-value=7.5e-71 Score=490.58 Aligned_cols=252 Identities=56% Similarity=0.969 Sum_probs=233.9
Q ss_pred cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCCC
Q 042295 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAP 81 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~ 81 (264)
||+|||||+|++.+++ +...++|+++++++. +||+||||||||++....|+++++++++|||+|||+++|+++|+++
T Consensus 1 p~~fi~HG~p~~~~~~-~~~~~~l~~~~~~l~--~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~ 77 (253)
T cd07363 1 PVLFISHGSPMLALED-NPATAFLRELGKELP--KPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAP 77 (253)
T ss_pred CeEEeCCCCcccccCC-ChHHHHHHHHHHhcC--CCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCC
Confidence 8999999999999855 445599999999985 9999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEE
Q 042295 82 GAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLII 161 (264)
Q Consensus 82 g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iI 161 (264)
||++||++|++.++++||+ ++.+.++++|||+||||++|+|+.++||||||+|...++++||+||++|++++++||+||
T Consensus 78 g~~eLa~~i~~~l~~~gi~-~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~~~~v~ii 156 (253)
T cd07363 78 GSPELAERVAELLKAAGIP-ARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLII 156 (253)
T ss_pred CCHHHHHHHHHHHHhcCCC-ccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhhhCCEEEE
Confidence 9999999999999999996 777778999999999999999999999999999988899999999999999999999999
Q ss_pred EecCCcccccccccCC-CCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCCCcee
Q 042295 162 GSGSATHNLKALQFDG-DSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAKAE 240 (264)
Q Consensus 162 aSG~lsH~l~~~~~~~-~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~~~~~ 240 (264)
|||++||||...+++. .++.+|+++||+|++++|+++|.++++......|.++.|||++|||+|+++++||+++.. .+
T Consensus 157 ~SG~lsH~l~~~~~~~~~~~~~~~~~Fd~~i~~~l~~~d~~~l~~~~~~~~~~~~ahp~~~h~~pll~~lGa~~~~~-~~ 235 (253)
T cd07363 157 GSGSSVHNLRALRWGGPAPPPPWALEFDDWLKDALTAGDLDALLDYWEKAPHARRAHPTEEHLLPLLVALGAAGGDE-AR 235 (253)
T ss_pred ecCcceechhhhccccCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHhCccHHHcCCChHHHHHHHHHhcCCCCCC-cE
Confidence 9999999999877531 367899999999999999999999977554558999999999999999999999997654 88
Q ss_pred EeccceeccceeeeEEEe
Q 042295 241 QIHQSWQLCSLSCSSYKF 258 (264)
Q Consensus 241 ~~~~~~~~~~~s~~~~~~ 258 (264)
+++++++++++||+||+|
T Consensus 236 ~~~~~~~~~~~~~~s~~~ 253 (253)
T cd07363 236 RLHDSIEYGSLSMSSYRF 253 (253)
T ss_pred EeecceecccceEEEEEC
Confidence 899999999999999997
No 4
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=100.00 E-value=3.7e-61 Score=432.06 Aligned_cols=251 Identities=41% Similarity=0.755 Sum_probs=198.3
Q ss_pred cEEEEcCCCCCCCCCCC------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCC----C-C--CeEEEecCCCccCCCCC
Q 042295 2 ETFFISHGSPTLPIDES------LQVRHFLKAWKEQVFLQKPNSILVISAHWET----D-V--PTVNVVRQNDTIYDFYG 68 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~----~-~--~~i~~~~~~~~~~D~~g 68 (264)
|++|+|||.|++...+. +.+.++|+++++++++.+||+|||||+||++ . . ..|..++.++.+|||+|
T Consensus 1 p~~~~sHgp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~g 80 (272)
T PF02900_consen 1 PAYFISHGPPMLPLEDPEPEGKWQRTFAALQELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYG 80 (272)
T ss_dssp -EEEEE--HHHHHCCH-CCCCCCHHHHHHHHHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS---
T ss_pred CEEEEeCCCccccccCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCccccccccc
Confidence 89999999888765331 3678999999999999999999999999998 2 2 34777777899999999
Q ss_pred CccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCC----CCChHHHH
Q 042295 69 FPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP----EKDGTYHY 144 (264)
Q Consensus 69 fP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~----~~~~~~~~ 144 (264)
||+++|+++|+++||++||++|++.+.++||+ ++.+.++++|||+||||++|+|+.++||||||+|. ..|+++||
T Consensus 81 fp~~~~~~~~~~~g~~~la~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~ 159 (272)
T PF02900_consen 81 FPPELYEIKYPAPGDPELAERIAEHLRKAGFD-VAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHY 159 (272)
T ss_dssp --SSSBSSS--EEB-HHHHHHHHHHHHHTTS--EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHH
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhcCCC-EEeccCcCCccccceeeeecccccCcceeeeEeecccccCCCHHHHH
Confidence 99999999999999999999999999999996 76788999999999999999999999999999998 78999999
Q ss_pred HHHHHhcccc---cCCeEEEEecCCcccccccccCCCCCc-chHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCC
Q 042295 145 NVGKALAPLK---DEGVLIIGSGSATHNLKALQFDGDSVV-SWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSP 220 (264)
Q Consensus 145 ~lG~aL~~~~---d~~v~iIaSG~lsH~l~~~~~~~~~~~-~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~ 220 (264)
+||++|++++ ++||+|||||++||||...+++ ++. +++++||+|++++|++||.++|+++..+.+..+.+|| +
T Consensus 160 ~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~~--~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~~~~~~-~ 236 (272)
T PF02900_consen 160 RLGRALRKARESSDERVAVIASGGLSHNLRDPRPG--GYDPPWAEEFDEWILDALESGDLEALLDLDDEEPEAAAAHP-E 236 (272)
T ss_dssp HHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTTT--S---CHHHHHHHHHHCCCCH-HHHTCTTGGHCCHCHHHHGC-C
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCcccCCCccccc--chhhHhHHHHHHHHHHHHHcCChHHHhhcChhhHHHHhCCC-h
Confidence 9999999998 9999999999999999988753 333 5999999999999999999999999766777788999 9
Q ss_pred cchHHHHHHhcccCCCCceeEeccceeccceeeeEEEec
Q 042295 221 EHFYPLHVAMGAAGEDAKAEQIHQSWQLCSLSCSSYKFT 259 (264)
Q Consensus 221 ~h~~pl~~a~Ga~~~~~~~~~~~~~~~~~~~s~~~~~~~ 259 (264)
|||+||++++||+++ .++.++.+.|++++|.+|.||
T Consensus 237 ~~~~~~~~~~GA~~~---~~~~~~~~~y~~~~~~~~~~g 272 (272)
T PF02900_consen 237 EHFRPWLVAAGAAGG---AEIKAEVLSYEPPFGWGYGFG 272 (272)
T ss_dssp CCCHHHHHHHHTS-S---ECSCEEEEECCCEEETTEEE-
T ss_pred hHHHHHHHHHHhcCC---CccceeeEEEeCcceeEEEeC
Confidence 999999999999986 334455688999999999986
No 5
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=100.00 E-value=2.1e-56 Score=401.44 Aligned_cols=236 Identities=18% Similarity=0.210 Sum_probs=203.5
Q ss_pred EEEEcCCCCCCCCCCC----hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC--CCeEEEe-----cCCCccCCCCCCcc
Q 042295 3 TFFISHGSPTLPIDES----LQVRHFLKAWKEQVFLQKPNSILVISAHWETD--VPTVNVV-----RQNDTIYDFYGFPE 71 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~----~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~--~~~i~~~-----~~~~~~~D~~gfP~ 71 (264)
++|++||+|++.+.+. ..+.++|+++++++++.+||+||||||||+++ ...|+.. ..++++|||+|||
T Consensus 5 ~~f~~hh~P~~~~~~~~~~~~~~~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~p- 83 (271)
T cd07373 5 SAFLVPGSPLPQLRPDVPSWGQFAAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGELP- 83 (271)
T ss_pred EEEecCCCCccccCCCcccHHHHHHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhcCcc-
Confidence 5799999998877553 27899999999999888999999999999984 4555442 2357899999998
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHhCCCCccc-ccCC-CCCcceeEeecccc-ccCCCCCeeeeeCCCCCChHHHHHHHH
Q 042295 72 QLYKLKYPAPGAPDLAKRVKELLRTSGFNHVK-EDTK-RGLDHGAWTPLMLM-YPEANIPVCQLSLQPEKDGTYHYNVGK 148 (264)
Q Consensus 72 ~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~-~~~~-~~lDHG~~vPL~~l-~p~~diPVV~is~~~~~~~~~~~~lG~ 148 (264)
|+++|+++||++|++.++++|++ +. .+.. +++|||+||||++| +|+.++||||+|++..+++++||+||+
T Consensus 84 ------~~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~~~~~~~~~~lG~ 156 (271)
T cd07373 84 ------YDIRSDTALAEACVTACPEHGVH-ARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNLYHSGEITEKLGA 156 (271)
T ss_pred ------cccCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 35799999999999999999995 65 4554 59999999999999 778999999999998899999999999
Q ss_pred Hhcc-ccc--CCeEEEEecCCccccccccc--C-CCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcc
Q 042295 149 ALAP-LKD--EGVLIIGSGSATHNLKALQF--D-GDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEH 222 (264)
Q Consensus 149 aL~~-~~d--~~v~iIaSG~lsH~l~~~~~--~-~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h 222 (264)
+|++ +++ +||+|||||+|||||...++ + +.++.+|+++||+|+++++++||.++|+++ .|.++.+||++||
T Consensus 157 al~~~l~~~~~rV~iIgSG~lSH~L~~~~~~~~~~~~~~p~~~~FD~~~~~~l~~gd~~~ll~~---~~~~~~~~~~~~g 233 (271)
T cd07373 157 IAADAAKDQNKRVAVVGVGGLSGSLFREEIDPREDHIANEEDDKWNRRVLKLIEAGDLPALREA---MPVYAKAARVDMG 233 (271)
T ss_pred HHHHHHHHcCCeEEEEEecccccCcCcCCCcCCCCCccCccHHHHHHHHHHHHHcCCHHHHHhc---CHHHHHHhcccCC
Confidence 9996 676 99999999999999976543 1 345789999999999999999999999976 5678899999999
Q ss_pred hHHHHHHhcccCCCCc-eeEeccceecc
Q 042295 223 FYPLHVAMGAAGEDAK-AEQIHQSWQLC 249 (264)
Q Consensus 223 ~~pl~~a~Ga~~~~~~-~~~~~~~~~~~ 249 (264)
|+|+++++||+++... .+++++++.+|
T Consensus 234 ~~pl~~~~Ga~~~~~~~~~~l~ye~~~G 261 (271)
T cd07373 234 FKHLHWILGALGGKFSGANVLGYGPSYG 261 (271)
T ss_pred hHHHHHHHHhcCCCccCcceeeccCCcc
Confidence 9999999999986543 77888887766
No 6
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=100.00 E-value=1.5e-52 Score=378.05 Aligned_cols=222 Identities=19% Similarity=0.246 Sum_probs=194.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-CCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhC
Q 042295 19 LQVRHFLKAWKEQVFLQKPNSILVISAHWETD-VPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTS 97 (264)
Q Consensus 19 ~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~ 97 (264)
+.+.++|+++++++++.+||+||||||||.++ ...|+..++++++|||+|||+++|+++|+++||++||++|++.+.++
T Consensus 30 ~~~~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~ 109 (282)
T TIGR02298 30 QGAIDGHKEISRRAKEMGVDTIVVFDTHWLVNSGYHINCNDQFSGSYTSHELPHFIQDLRYDYPGNPALGQLIADEAQEH 109 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECCCCCcCCCeEEecCCCCcceecCCCCChhhhCceeeCCCCHHHHHHHHHHHHHC
Confidence 47889999999999888999999999999987 57788888899999999999999999999999999999999999999
Q ss_pred CCCccc--ccCCCCCcceeEeeccccccCCCCCeeeeeCC-CCCChHHHHHHHHHhccc---ccCCeEEEEecCCccccc
Q 042295 98 GFNHVK--EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQ-PEKDGTYHYNVGKALAPL---KDEGVLIIGSGSATHNLK 171 (264)
Q Consensus 98 gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~-~~~~~~~~~~lG~aL~~~---~d~~v~iIaSG~lsH~l~ 171 (264)
||+ +. .+.+++||||+||||++|+|+.++||||||+| ...+++++|+||++|+++ +++||+|||||++||||.
T Consensus 110 gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~~~~~rV~iIaSG~lSH~L~ 188 (282)
T TIGR02298 110 GVK-TLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCTVHDIEESRALGEAIRKAIEQSDGRVAVLASGSLSHRFW 188 (282)
T ss_pred CCc-eeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEecccceecC
Confidence 995 65 46789999999999999999999999999998 457999999999999999 789999999999999998
Q ss_pred cccc-CCCCCcchHHHH----HHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC---CCceeEec
Q 042295 172 ALQF-DGDSVVSWASEF----DCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE---DAKAEQIH 243 (264)
Q Consensus 172 ~~~~-~~~~~~~~~~~F----D~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~---~~~~~~~~ 243 (264)
..+. +++++.+|+.+| |+.+++++++||.++|+++.. ........+|+++++++++||.+. ..+.++++
T Consensus 189 ~~~~~~p~g~~~~a~~f~~~~D~~v~~~l~~gd~~~l~~~~~---~~~~~~age~g~~~~~~l~Gal~~~~~~~~~~~l~ 265 (282)
T TIGR02298 189 DNKDLAPEGMTTIASEFNRQVDLRVLELWRERDYREFCAMLP---DYAVKCNGEGGMHDTVMLFGALGWDDYDGEVEVIT 265 (282)
T ss_pred cccCCCcccCCchhhHHHHHHHHHHHHHHHcCCHHHHHHhCH---HHHHhcCcccChHHHHHHHhccCCCCccccceEec
Confidence 7642 255677897775 888999999999999999743 233333568999999999999952 24566665
Q ss_pred c
Q 042295 244 Q 244 (264)
Q Consensus 244 ~ 244 (264)
+
T Consensus 266 ~ 266 (282)
T TIGR02298 266 E 266 (282)
T ss_pred c
Confidence 3
No 7
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=100.00 E-value=3.6e-52 Score=375.67 Aligned_cols=253 Identities=18% Similarity=0.204 Sum_probs=213.2
Q ss_pred cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-CCeEEEecCCCccCCCCCCccccccccCCC
Q 042295 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETD-VPTVNVVRQNDTIYDFYGFPEQLYKLKYPA 80 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~ 80 (264)
|++|++||.++... ..+++.++|+++++++.+.+||+||||||||++. ...|+..+++.++|||+|||+++|+++|++
T Consensus 12 P~i~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~Pd~ivviS~H~~~~~~~~i~~~~~~~g~~~~~g~p~~~~~i~~~~ 90 (280)
T cd07370 12 PTMMLSEQPGPNKG-CRQAAIDGLKEIGRRARELGVDTIVVFDTHWLVNAGYHINANARFSGLFTSNELPHFIADMPYDY 90 (280)
T ss_pred CeEEecCCCCCccc-hHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeEeccCCCCceecCCCCCchhcCCCCCC
Confidence 67889998655422 2257899999999999878999999999999885 577888888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCccc--ccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhccc---cc
Q 042295 81 PGAPDLAKRVKELLRTSGFNHVK--EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPL---KD 155 (264)
Q Consensus 81 ~g~~elA~~i~~~l~~~gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~---~d 155 (264)
+||++||++|++.+.+.|++ +. .+.++++|||+||||++|+|+.++||||||+|...+++++++||++|+++ ++
T Consensus 91 ~gd~ela~~i~~~~~~~g~~-~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~~~~~~~~~lG~al~~~~~~~~ 169 (280)
T cd07370 91 AGDPELAHLIAEEATEHGVK-TLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLGEAIRRAIAASD 169 (280)
T ss_pred CCCHHHHHHHHHHHHHCCCC-eeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecCCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999996 44 56789999999999999999999999999999889999999999999998 57
Q ss_pred CCeEEEEecCCcccccccccCCC------CCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCC--CcchHHHH
Q 042295 156 EGVLIIGSGSATHNLKALQFDGD------SVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPS--PEHFYPLH 227 (264)
Q Consensus 156 ~~v~iIaSG~lsH~l~~~~~~~~------~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~--~~h~~pl~ 227 (264)
+||+|||||++||+|....+... ...+|+++||+|++++|+++|.++|+++.. +..+.++|+ .+||++++
T Consensus 170 ~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~~p~~~~fD~~~~~~i~~gD~~~L~~~~~--~~~~~~~g~~g~~~~l~l~ 247 (280)
T cd07370 170 RRVALLASGSLSHRFWPNRELEAHEDPFTISSPFNRQVDLRVLELWKEGRHAEFLDMLP--DYARRCAGEGGMHDTAMLF 247 (280)
T ss_pred CCEEEEEeccccccCccCCCccccccccccCChhHHHHHHHHHHHHHcCCHHHHHHhCH--HHHHHhCccCChHHHHHHH
Confidence 79999999999999865432111 246899999999999999999999999842 455578887 78999999
Q ss_pred HHhcccCCCCceeEeccceeccceeeeEEEe
Q 042295 228 VAMGAAGEDAKAEQIHQSWQLCSLSCSSYKF 258 (264)
Q Consensus 228 ~a~Ga~~~~~~~~~~~~~~~~~~~s~~~~~~ 258 (264)
.++|+.+.+.+.+++.+-..-.+++|..=.|
T Consensus 248 ~alG~~~~~~~~~~~~~ye~~~g~g~~v~~~ 278 (280)
T cd07370 248 GALGWDDYDGKAEVVTEYFPSSGTGQVNVWF 278 (280)
T ss_pred hhhCccccccceeEecccCCCCccceEEEEe
Confidence 9999987777777766333334555554444
No 8
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=100.00 E-value=4.5e-51 Score=366.88 Aligned_cols=234 Identities=22% Similarity=0.273 Sum_probs=193.9
Q ss_pred EEEEcCCCCCCCCCCC---------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCC-eEEEecCCCccCCCCCCccc
Q 042295 3 TFFISHGSPTLPIDES---------LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVP-TVNVVRQNDTIYDFYGFPEQ 72 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~---------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~-~i~~~~~~~~~~D~~gfP~~ 72 (264)
++++|| ||+++++. .+|.++|+++++++++.+||+||||||||++... .+.........+|++|||+.
T Consensus 3 a~~~pH--~P~i~~~~~~~~~~~~~~~t~~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~ 80 (272)
T cd07362 3 AMLAPH--VPSMCHEENPPENQGCLVGAIKGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDL 80 (272)
T ss_pred ccccCC--CCEeecCCCCCchhhhHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCch
Confidence 578899 88776442 1367999999999988899999999999999863 23333333457999999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCCcceeEeeccccccCCCCCeeeeeCCC-CCChHHHHHHHHH
Q 042295 73 LYKLKYPAPGAPDLAKRVKELLRTSGFNHVK--EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP-EKDGTYHYNVGKA 149 (264)
Q Consensus 73 ~y~~~y~~~g~~elA~~i~~~l~~~gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~-~~~~~~~~~lG~a 149 (264)
+|+++|+++||++||++|++.+.++||+ ++ .+.++++|||+||||++|+|+.++||||||+|+ ..++++||+||++
T Consensus 81 ~~~~~y~~~g~~~LA~~i~~~l~~~Gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~~~~~~~~~~lG~a 159 (272)
T cd07362 81 ISDVPYDYPGDPELGRLLVEEGQEAGLR-VKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEV 159 (272)
T ss_pred hhccccCCCCCHHHHHHHHHHHHHcCCc-eeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999996 65 356899999999999999999999999999998 6899999999976
Q ss_pred hccc-c--cCCeEEEEecCCccccccccc---CCCCC-cchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcc
Q 042295 150 LAPL-K--DEGVLIIGSGSATHNLKALQF---DGDSV-VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEH 222 (264)
Q Consensus 150 L~~~-~--d~~v~iIaSG~lsH~l~~~~~---~~~~~-~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h 222 (264)
|+++ + ++||+|||||++||||+...+ +..++ .+|+++||+|+++++++||.++|+++..+ ....|-+ +|+
T Consensus 160 i~~al~~~~~rv~ii~SG~lsH~l~~~~~~~~g~~~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~--~~~~A~~-e~g 236 (272)
T cd07362 160 IGKALLESDKRVVFLASGSLSHNLVRGPEAEEGMNHYPSLAEQQMDRRFIQLLREGQFQEACNMLPQ--YARAAGV-ESG 236 (272)
T ss_pred HHHHHHhhCCCEEEEEeCcccccCCCCCCCcccccCCCChhHHHHHHHHHHHHHcCCHHHHHHhCHH--HHHHhcC-Ccc
Confidence 6664 1 789999999999999987664 22333 47999999999999999999999999533 3334444 899
Q ss_pred hHHHHHHhcccCCCC-ceeEe
Q 042295 223 FYPLHVAMGAAGEDA-KAEQI 242 (264)
Q Consensus 223 ~~pl~~a~Ga~~~~~-~~~~~ 242 (264)
++++++++|++.... +.+++
T Consensus 237 ~~~~~~~~g~~~g~~~~~~v~ 257 (272)
T cd07362 237 GRHLTVMLGVMQGWGKVAELH 257 (272)
T ss_pred cHHHHHHHHHhcCCcccceec
Confidence 999999999997543 34443
No 9
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=100.00 E-value=4e-51 Score=366.67 Aligned_cols=242 Identities=18% Similarity=0.177 Sum_probs=196.8
Q ss_pred EEEcCCCCCCCCCCC----hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEe-cCCCccCCCCCCccccccccC
Q 042295 4 FFISHGSPTLPIDES----LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVV-RQNDTIYDFYGFPEQLYKLKY 78 (264)
Q Consensus 4 ~fisHG~P~~~~~~~----~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~-~~~~~~~D~~gfP~~~y~~~y 78 (264)
.|++||+|++.+.+. .++.++|+++++++.+.+||+||||||||++..+.+++. +..+..++.++|| ++|+++|
T Consensus 3 ~~l~~H~P~~~~~~~~~~~~~~~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~y 81 (268)
T cd07371 3 AFLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWP-EFGRLDY 81 (268)
T ss_pred eEecCCCCcccCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCcccc-hhceeee
Confidence 589999998886542 267899999999998889999999999999987644443 2345556667886 7889999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccc--cCCCCCcceeEeeccccccCCCCCeeeeeCCCC-CChHHHHHHHHHhccc-c
Q 042295 79 PAPGAPDLAKRVKELLRTSGFNHVKE--DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE-KDGTYHYNVGKALAPL-K 154 (264)
Q Consensus 79 ~~~g~~elA~~i~~~l~~~gid~~~~--~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~-~~~~~~~~lG~aL~~~-~ 154 (264)
+++||++||++|++.++++||+ +.. +.++++|||+||||++|+|+.++||||+|+|+. .|+++||+||++|+++ +
T Consensus 82 ~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~ 160 (268)
T cd07371 82 SINVDVELAEACVEEGRKAGLV-TRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATR 160 (268)
T ss_pred cCCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 654 678999999999999999999999999999876 7999999999999864 7
Q ss_pred c--CCeEEEEecCCcccccccccCCC---CCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHH
Q 042295 155 D--EGVLIIGSGSATHNLKALQFDGD---SVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVA 229 (264)
Q Consensus 155 d--~~v~iIaSG~lsH~l~~~~~~~~---~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a 229 (264)
+ +||+|||||++||||...+.+.+ ++.+++++||+++++.+++||.++|+++..+.......+++.+|+++++.+
T Consensus 161 ~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~~~~gd~~~l~~~~~~~~~~a~~~~g~~~~~~l~ga 240 (268)
T cd07371 161 DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLELMEQGDMSALFELLPQYIKEARADMGSKAFTWMLGA 240 (268)
T ss_pred HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcccccHHHHHHHHHh
Confidence 5 89999999999999976553211 456999999999999999999999999864433333456666777777777
Q ss_pred hcccCCCCceeEeccceecc
Q 042295 230 MGAAGEDAKAEQIHQSWQLC 249 (264)
Q Consensus 230 ~Ga~~~~~~~~~~~~~~~~~ 249 (264)
+|..+ .+++++.++..+|
T Consensus 241 l~~~~--~~~~v~~Ye~~~G 258 (268)
T cd07371 241 MGYPE--LAAEVHGYGTVYG 258 (268)
T ss_pred cCCcc--cCccEeeccCCCc
Confidence 76653 3566776554444
No 10
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=100.00 E-value=2e-49 Score=353.56 Aligned_cols=227 Identities=19% Similarity=0.261 Sum_probs=191.8
Q ss_pred EEEEcCCCCCCCCCC--ChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCC
Q 042295 3 TFFISHGSPTLPIDE--SLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPA 80 (264)
Q Consensus 3 ~~fisHG~P~~~~~~--~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~ 80 (264)
++|||||+|++.... .+++.+++++.+.+ +.+||+||||||||.+....++++.. +.+||++|||.++|+.+|
T Consensus 2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~--~~~Pd~IvvispH~~~~~~~~~i~~~-~~~~g~~~~p~~~~~~~~-- 76 (256)
T cd07952 2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAK--NDDPDVLVVITPHGIRLSGHVAVILT-EYLEGTLRTNKVLIRSKY-- 76 (256)
T ss_pred eEEcCCCCccCCCCCcchHHHHHHHHHHHHH--hcCCCEEEEECCCcccccCceEEeec-CeeeeecccCCCceEEec--
Confidence 589999998887633 24667788886655 57899999999999987666766654 449999999999988777
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccc---------cCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhc
Q 042295 81 PGAPDLAKRVKELLRTSGFNHVKE---------DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALA 151 (264)
Q Consensus 81 ~g~~elA~~i~~~l~~~gid~~~~---------~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~ 151 (264)
|||++||++|++.+.++|++ +.. ...+++|||+||||+||+|. ||||+|++...+++++++||++|+
T Consensus 77 ~~d~ela~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~---pvV~is~~~~~~~~~~~~lG~aL~ 152 (256)
T cd07952 77 PNDRELANEIYKSARADGIP-VLGINFATSSGDNSDFPLDWGELIPLSFLKKR---PIVLITPPRLLPREELVEFGRALG 152 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCc-eeeccchhhccccCCCCCCccccccHhhCCCC---CeEEEccccCCCHHHHHHHHHHHH
Confidence 69999999999999999984 542 23688999999999999985 999999986679999999999999
Q ss_pred cc---ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHH
Q 042295 152 PL---KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHV 228 (264)
Q Consensus 152 ~~---~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~ 228 (264)
++ +++||+|||||++|||+.... +.++.+|+++||+|++++|+++|.++|+++.+. +.+|++.|||+|+++
T Consensus 153 ~~~~~~~~~vliIaSGdlSH~l~~~~--p~~~~~~a~~fD~~~~~~l~~~d~~~l~~~~~~----~~~~a~~cg~~pl~~ 226 (256)
T cd07952 153 KALEGYEKRVAVIISADHAHTHDPDG--PYGYSPDAAEYDAAIVEAIENNDFEALLELDDE----LIEKAKPDSYWQLLI 226 (256)
T ss_pred HHHHhcCCcEEEEEecCccccCCCCC--CCCCCcchHHHHHHHHHHHHcCCHHHHHhCCHH----HHHHhhhcCHHHHHH
Confidence 98 577999999999999997543 566789999999999999999999999998432 678889999999999
Q ss_pred HhcccCCC-CceeEecc
Q 042295 229 AMGAAGED-AKAEQIHQ 244 (264)
Q Consensus 229 a~Ga~~~~-~~~~~~~~ 244 (264)
++|++... .+++++..
T Consensus 227 ~lga~~~~~~~~~vl~Y 243 (256)
T cd07952 227 LAGILESSPRKSKVLYY 243 (256)
T ss_pred HHhhccCCCccceEEEc
Confidence 99998643 46677654
No 11
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=100.00 E-value=1.1e-49 Score=355.06 Aligned_cols=247 Identities=21% Similarity=0.265 Sum_probs=210.8
Q ss_pred EEEEcCCCCCCCCCCCh--HHHHHHHHHHHHhhcCCCCEEEEEcCCCC--CCCCeEEEecCCCccCCCCCCccccccccC
Q 042295 3 TFFISHGSPTLPIDESL--QVRHFLKAWKEQVFLQKPNSILVISAHWE--TDVPTVNVVRQNDTIYDFYGFPEQLYKLKY 78 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~~--~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~--~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y 78 (264)
++|+|||+|+...+... ...++|+++++++.+.+||+||||||||. +....|+..+..+++||| +.+|++.|
T Consensus 2 ~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~ 77 (260)
T cd07320 2 AIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSG----QWGRRPVY 77 (260)
T ss_pred CCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceecccccc----ccCCCCCc
Confidence 58999999988774422 11246888999887789999999999999 455667777788899997 44677889
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccccCC-CCCcceeEeeccccccC-CCCCeeeeeCCCCC-ChHHHHHHHHHhcccc-
Q 042295 79 PAPGAPDLAKRVKELLRTSGFNHVKEDTK-RGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEK-DGTYHYNVGKALAPLK- 154 (264)
Q Consensus 79 ~~~g~~elA~~i~~~l~~~gid~~~~~~~-~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~-~~~~~~~lG~aL~~~~- 154 (264)
+++||++||++|++.+.+ |++ +..... +++|||+||||.+|+|+ .++|||||+++... ++++|++||++|++++
T Consensus 78 ~~~~d~ela~~l~~~~~~-~~~-~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~ 155 (260)
T cd07320 78 DVKGDPDLAWEIAEELIK-EIP-VTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVE 155 (260)
T ss_pred CCCCCHHHHHHHHHHHHh-cCC-EEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988 995 654444 69999999999999999 89999999999665 9999999999999998
Q ss_pred --cCCeEEEEecCCcccccccccC-CCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhc
Q 042295 155 --DEGVLIIGSGSATHNLKALQFD-GDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMG 231 (264)
Q Consensus 155 --d~~v~iIaSG~lsH~l~~~~~~-~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~G 231 (264)
++||+|||||++|||+...++. ..+..+|+++||++++++|+++|.++|+++. |..+.+|++.||++||++++|
T Consensus 156 ~~~~~vliI~SGdlsH~~~~~~~~~~~~~~~~~~efD~~~~~~l~~~d~~~l~~~~---~~~~~~~~~~~g~~~~~~~~g 232 (260)
T cd07320 156 PSDLRVHVVASGDLSHQLQGDRPSSQSGYYPIAEEFDKYVIDNLEELDPVEFKNMH---QYLTISNATPCGFHPLLILLG 232 (260)
T ss_pred hcCCcEEEEEeCccccCCCCCCcccccCcCcchHHHHHHHHHHHHcCCHHHHhhcC---hHHHhcCCCccCHHHHHHHHH
Confidence 8899999999999999776531 1345689999999999999999999999873 567889999999999999999
Q ss_pred ccCCCCc-eeEeccceeccceeeeEEEe
Q 042295 232 AAGEDAK-AEQIHQSWQLCSLSCSSYKF 258 (264)
Q Consensus 232 a~~~~~~-~~~~~~~~~~~~~s~~~~~~ 258 (264)
|+++... .+++++.+..+++||.+..|
T Consensus 233 a~~~~~~~~~~~~~~~~~~~vg~~~~~~ 260 (260)
T cd07320 233 ALDGKERKDLFTVYGIPSSSTGYAAAIL 260 (260)
T ss_pred hcCCCccceEEeecCCCCCCceEEEEEC
Confidence 9986554 67889998889999998876
No 12
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=100.00 E-value=9.7e-46 Score=331.68 Aligned_cols=222 Identities=22% Similarity=0.295 Sum_probs=177.7
Q ss_pred EEEEcCCCCCCCCCC-C---hHHHHHHHHHHHHhhcCCCCEEEEEcC-CCCCC----CCeEEEecCCCccCCCC--CCcc
Q 042295 3 TFFISHGSPTLPIDE-S---LQVRHFLKAWKEQVFLQKPNSILVISA-HWETD----VPTVNVVRQNDTIYDFY--GFPE 71 (264)
Q Consensus 3 ~~fisHG~P~~~~~~-~---~~~~~~l~~l~~~l~~~~Pd~IVviS~-Hw~~~----~~~i~~~~~~~~~~D~~--gfP~ 71 (264)
++++|| +++.-.. . +++.++|+++++++++.+||+|||||| ||.+. .+.++++... .++||+ |||+
T Consensus 7 ~~~~~H--~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~-~~~~~~~~g~p~ 83 (268)
T cd07367 7 AAATSH--ILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTAD-SYTPFGDMDIPR 83 (268)
T ss_pred EEecCC--cCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeecc-ccccCCcCCCCc
Confidence 578999 5443211 1 367899999999998889999999999 55542 3444444332 233554 8885
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC----ChHHHHHHH
Q 042295 72 QLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK----DGTYHYNVG 147 (264)
Q Consensus 72 ~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~----~~~~~~~lG 147 (264)
.. ++||++||++|++.+.++||| +..+.++++|||+||||++|+|+.++||||||+|... ++++||+||
T Consensus 84 ~~------~~gd~~LA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~~~~~lG 156 (268)
T cd07367 84 EL------FPGHREFARAFVRQAAEDGFD-LAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWALG 156 (268)
T ss_pred cc------CCCCHHHHHHHHHHHHHcCCC-eeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHHHHHHHH
Confidence 43 589999999999999999996 7777889999999999999999999999999998775 589999999
Q ss_pred HHhccc------ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCc
Q 042295 148 KALAPL------KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPE 221 (264)
Q Consensus 148 ~aL~~~------~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~ 221 (264)
++|+++ +++||+|||||+|||||.... ..+++++||+|+++++++||.++|++++.+ ......++|
T Consensus 157 ~al~~~i~~~~~~d~rV~iiaSGgLSH~l~~~~-----~~~~~~efD~~i~~~l~~gd~~~L~~~~~~---~~~~~ag~~ 228 (268)
T cd07367 157 KVLAQYVEKRRPAGERVAVIAAGGLSHWLGVPR-----HGEVNEAFDRMFLDLLEGGNGERLAGMGND---EILDQAGNG 228 (268)
T ss_pred HHHHHHHHhcCCCCCcEEEEEcccccCCCCCCc-----ccccCHHHHHHHHHHHHcCCHHHHHhCCHH---HHHHhCccc
Confidence 999999 789999999999999996532 236889999999999999999999999532 123344577
Q ss_pred chH--HHHHHhcccCCCCceeEec
Q 042295 222 HFY--PLHVAMGAAGEDAKAEQIH 243 (264)
Q Consensus 222 h~~--pl~~a~Ga~~~~~~~~~~~ 243 (264)
++. +|++++||.++.. .+++.
T Consensus 229 g~e~~~w~~~~GAl~~~~-~~v~~ 251 (268)
T cd07367 229 GLEIVNWIMAAAAVEAQS-GEKVY 251 (268)
T ss_pred chHHHHHHHHHhhcCCCC-ccEEE
Confidence 777 9999999997643 55544
No 13
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=100.00 E-value=5.6e-45 Score=327.28 Aligned_cols=225 Identities=22% Similarity=0.309 Sum_probs=183.2
Q ss_pred EEEEcCCCCCCCCCCC--------hHHHHHHHHHHHHhhcCCCCEEEEEcCC-----CCCCCC--eEEEecCCCccCCCC
Q 042295 3 TFFISHGSPTLPIDES--------LQVRHFLKAWKEQVFLQKPNSILVISAH-----WETDVP--TVNVVRQNDTIYDFY 67 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~--------~~~~~~l~~l~~~l~~~~Pd~IVviS~H-----w~~~~~--~i~~~~~~~~~~D~~ 67 (264)
+++.|| ||+++++. +++.++|+++++++++.+||+|||||+| |.+..+ +|++.+.....++
T Consensus 5 ~~~~~H--~P~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~~~~-- 80 (271)
T cd07359 5 GIGASH--APGLTGAADPGPDAVRAAVFAAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEGPDE-- 80 (271)
T ss_pred EEecCC--CCcccCCCCCCcHhHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccCCcc--
Confidence 467899 88776442 3678999999999988999999999995 434333 4554444332222
Q ss_pred CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC----ChHHH
Q 042295 68 GFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK----DGTYH 143 (264)
Q Consensus 68 gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~----~~~~~ 143 (264)
++ +|..+|+++||++||++|.+.+.+.|++ ++.+.++++|||+||||++|+|+.++||||||+|... ++++|
T Consensus 81 ~~---~~~~~~~~~~d~elA~~i~~~~~~~g~~-~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~~~~ 156 (271)
T cd07359 81 GW---LGIPRAPVPGDADLARHLLAGLVEDGFD-VAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSLRRC 156 (271)
T ss_pred cc---ccCcCCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCHHHH
Confidence 22 5677899999999999999999999995 7777789999999999999999999999999998754 78999
Q ss_pred HHHHHHhccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCC
Q 042295 144 YNVGKALAPL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHP 218 (264)
Q Consensus 144 ~~lG~aL~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp 218 (264)
++||++|+++ ||+||+|||||++|||+..... .+++++||++++++|+++|.++|+++. ..+..+.+++
T Consensus 157 ~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH~l~~~~~-----g~~~~~fD~~~~~~l~~~d~~~l~~~~-~~~~~~~ag~ 230 (271)
T cd07359 157 YALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPRH-----GEINEEFDREFLDLLERGDLEALLKAT-TEETLEEAGN 230 (271)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCcccCCCCCccc-----cccCHHHHHHHHHHHHhCCHHHHHhcC-HHHHHHHcCC
Confidence 9999999997 5889999999999999976432 267899999999999999999999883 3455567777
Q ss_pred CCcchHHHHHHhcccCCCCceeEe
Q 042295 219 SPEHFYPLHVAMGAAGEDAKAEQI 242 (264)
Q Consensus 219 ~~~h~~pl~~a~Ga~~~~~~~~~~ 242 (264)
...||+||++++||++... ++++
T Consensus 231 ~~~e~~~~~~~~GA~~~~~-~~~~ 253 (271)
T cd07359 231 GGHEILNWIAAAGALGEAP-GEVL 253 (271)
T ss_pred CcHHHHHHHHHHHhhccCc-ccee
Confidence 6677999999999987543 4443
No 14
>PRK03881 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-44 Score=341.82 Aligned_cols=245 Identities=19% Similarity=0.283 Sum_probs=210.4
Q ss_pred EEEEcCCCCCCCCCCC--------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccc
Q 042295 3 TFFISHGSPTLPIDES--------LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLY 74 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~--------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y 74 (264)
++++|| ||+++++. +++.++|+++++++.+.+||+||||||||......+.+...+...+||+||+. |
T Consensus 6 a~~~PH--~P~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~--~ 81 (467)
T PRK03881 6 AYLMPH--PPIIVPEVGRGEEKKIQATIDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGA--P 81 (467)
T ss_pred EEEcCC--CCEeecCCCCCchhhHHHHHHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCC--C
Confidence 678999 67777642 47889999999999888999999999999987788888888899999999974 7
Q ss_pred cccCCCCCCHHHHHHHHHHHHhCCCCcccc---------cCCCCCcceeEeeccccccC-CCCCeeeeeCCCCCChHHHH
Q 042295 75 KLKYPAPGAPDLAKRVKELLRTSGFNHVKE---------DTKRGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEKDGTYHY 144 (264)
Q Consensus 75 ~~~y~~~g~~elA~~i~~~l~~~gid~~~~---------~~~~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~~~~~~~ 144 (264)
+++|+++||++||++|++.++++||+ +.. +..+++|||+||||.||+|+ .++|||||+++ ..++++|+
T Consensus 82 ~v~~~~~~d~eLA~~i~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~d~pVVpis~~-~~~~~~~~ 159 (467)
T PRK03881 82 EVSFSFKNDLELVEEIAEEAKKEGIP-VVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLVHISYG-GLSPEELY 159 (467)
T ss_pred CccccCCCCHHHHHHHHHHHHHcCCc-eEeecccccccccCCCCCCceEEeehhhhccccCCCCEEEEeCC-CCCHHHHH
Confidence 89999999999999999999999995 654 56789999999999999998 79999999996 77999999
Q ss_pred HHHHHhcccc---cCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCc
Q 042295 145 NVGKALAPLK---DEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPE 221 (264)
Q Consensus 145 ~lG~aL~~~~---d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~ 221 (264)
+||++|++++ ++||+|||||++|||+.... +.++.+++++||++++++|+++|.++|+++..+ ...+++.|
T Consensus 160 ~lG~aL~~~~~~~~~rvliIaSGdLSH~l~~~~--p~g~~~~a~~fD~~ii~~i~~gD~~~L~~~~~~----~~~~a~~c 233 (467)
T PRK03881 160 KFGMAIREAAEELGRKVVLIASGDLSHRLTPDG--PYGYAPEGPEFDRAIVELLSKGDVEGLLSIDEE----LIEEAGEC 233 (467)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCcccccCCCCC--CCCCCcchHHHHHHHHHHHHcCCHHHHHhcCHH----HHHhhhhc
Confidence 9999999986 45999999999999996542 556678999999999999999999999998432 34566789
Q ss_pred chHHHHHHhcccCCC-CceeEeccceeccceeeeEEEecc
Q 042295 222 HFYPLHVAMGAAGED-AKAEQIHQSWQLCSLSCSSYKFTA 260 (264)
Q Consensus 222 h~~pl~~a~Ga~~~~-~~~~~~~~~~~~~~~s~~~~~~~~ 260 (264)
||+||++++|++... .+++++.....+| ++|.++.|..
T Consensus 234 G~~p~~~~lga~~~~~~~~~~l~Y~~~~g-VGYa~~~f~~ 272 (467)
T PRK03881 234 GLRSVLIMLGALDGYSVKSEVLSYEGPFG-VGYGVARFEP 272 (467)
T ss_pred CHHHHHHHHHhccccCCCceEEEEeCCcc-cceEEEEEec
Confidence 999999999998743 3577776554555 8899999965
No 15
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=100.00 E-value=1.9e-43 Score=320.01 Aligned_cols=236 Identities=20% Similarity=0.227 Sum_probs=185.8
Q ss_pred EEEEcCCCCCCCCCCC------------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCC-
Q 042295 3 TFFISHGSPTLPIDES------------LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGF- 69 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~------------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gf- 69 (264)
+.+++| .|++++.+. ..+.++++++++++++.+||+||||||||.++.. ..+...++..++|.+|
T Consensus 6 a~~~pH-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~~~~~~ 83 (294)
T cd07372 6 GFLAPH-PPHLVYGENPPQNEPRSQGGWEQLRWAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGRSVDPI 83 (294)
T ss_pred EEecCC-CCeeecccCCcccccccchhHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCcccccccccc
Confidence 467889 455553221 1367999999999999999999999999998754 3334445556666654
Q ss_pred -ccccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCCcceeEeeccccccCCCCCeeeeeCCC-------CCC
Q 042295 70 -PEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVK--EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP-------EKD 139 (264)
Q Consensus 70 -P~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~--~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~-------~~~ 139 (264)
| ++|+++|+++||++||++|.+.++++||+ +. .+.+++||||+||||+||+|+.++|||+||++. ..+
T Consensus 84 ~p-~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~-~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~~~ 161 (294)
T cd07372 84 FP-NLFRYDFSMNVDVELAEACCEEGRKAGLV-TKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTKEG 161 (294)
T ss_pred cc-cceeeccCCCCCHHHHHHHHHHHHHCCCC-eeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccccccCC
Confidence 4 58888999999999999999999999996 64 367899999999999999999999999999873 235
Q ss_pred hHHHHHHHHHhccc-c--cCCeEEEEecCCccccccccc-CCCCCcc------hHHHHHHHHHHHHHcCCHHHHhcchhh
Q 042295 140 GTYHYNVGKALAPL-K--DEGVLIIGSGSATHNLKALQF-DGDSVVS------WASEFDCWLKDALLQGRYEDVNHYEEK 209 (264)
Q Consensus 140 ~~~~~~lG~aL~~~-~--d~~v~iIaSG~lsH~l~~~~~-~~~~~~~------~~~~FD~~~~~~l~~gd~~~l~~~~~~ 209 (264)
++++|+||++|+++ + ++||+|||||+|||++..... ++.++.+ .+++||+.+++.+++||.++|+++..+
T Consensus 162 ~~~~~~lG~ai~~al~~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~l~~gd~~~l~~~~~~ 241 (294)
T cd07372 162 LGEMDVLGKATREAIRKTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIELMRQGRMKEVFRLLPQ 241 (294)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHHHHcCCHHHHHhcCHH
Confidence 89999999999994 4 678999999999999743221 2333333 789999999999999999999999543
Q ss_pred CCcchhcCCCCcchHHHHHHhcccCCC-CceeEeccc
Q 042295 210 APYGKMAHPSPEHFYPLHVAMGAAGED-AKAEQIHQS 245 (264)
Q Consensus 210 ~p~~~~ahp~~~h~~pl~~a~Ga~~~~-~~~~~~~~~ 245 (264)
....|. .+|++.++++++||++.. .+.+++..+
T Consensus 242 --~~~~A~-ge~g~~~~~~~~ga~~~~~~~~~vlsYe 275 (294)
T cd07372 242 --FIEEAF-AEVKSGAFTWMHAAMQYPELAAELHGYG 275 (294)
T ss_pred --HHHHhc-cccchHHHHHHHHhhcCCCcCceEeecc
Confidence 223333 489999999999998643 467766543
No 16
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=100.00 E-value=2.1e-43 Score=329.73 Aligned_cols=221 Identities=22% Similarity=0.286 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEE-cCCCCC----CCCeEEEecCCCcc-CCC-CCCccccccccCCCCCCHHHHHHHHH
Q 042295 20 QVRHFLKAWKEQVFLQKPNSILVI-SAHWET----DVPTVNVVRQNDTI-YDF-YGFPEQLYKLKYPAPGAPDLAKRVKE 92 (264)
Q Consensus 20 ~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~----~~~~i~~~~~~~~~-~D~-~gfP~~~y~~~y~~~g~~elA~~i~~ 92 (264)
+..++++++++++++.+||+|||| ++|... ..++|+++...... +|+ +| |. -..++||+|+||++|++
T Consensus 179 ~v~~~~~~~r~~l~~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~p~d~g~G-~~----~v~~~pG~peLA~~I~~ 253 (444)
T PRK13372 179 KLFAGYDLSREWAKEHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFPPADEGWG-PR----PVPDVIGHPELAAHIAQ 253 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEEccccCCCcccCC-CC----CCCCCCCCHHHHHHHHH
Confidence 567889999999999999999999 558553 34556555443333 564 22 11 12468999999999999
Q ss_pred HHHhCCCCcccccCCCCCcceeEeeccccccCC---CCCeeeeeCCCCC----ChHHHHHHHHHhccccc------CCeE
Q 042295 93 LLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA---NIPVCQLSLQPEK----DGTYHYNVGKALAPLKD------EGVL 159 (264)
Q Consensus 93 ~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~---diPVV~is~~~~~----~~~~~~~lG~aL~~~~d------~~v~ 159 (264)
.|.++||| ++.+.++++|||+||||.+|+|++ +|||||||+|+.. |+++||+||++|+++++ +||+
T Consensus 254 ~L~~~GfD-~a~~~erglDHG~~vPL~lm~P~ad~~~IPVVPvsvN~~~~Plps~~R~~~LG~AL~~lres~~~D~erVl 332 (444)
T PRK13372 254 SVIQDDFD-LTIVNEMDVDHGLTVPLSLMCGDPEAWPCPVIPFAVNVVQYPVPSGRRCYELGQAIRRAIDKWDADPLNVQ 332 (444)
T ss_pred HHHhcCCC-hhhccCCCCCchhhhhHHHhCCcccCCCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHhhcccccCCEE
Confidence 99999997 788899999999999999999996 4999999999884 99999999999999986 9999
Q ss_pred EEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCCCc-
Q 042295 160 IIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGEDAK- 238 (264)
Q Consensus 160 iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~~~- 238 (264)
|||||++||||...+. ..|+++||+|++++|++ |.++|.+|+ ..+.++.+||+.+|++||++++||+++..+
T Consensus 333 IIGSGGLSHnL~~~~~-----g~in~eFD~~~ld~L~~-D~e~L~~~~-~~~~~~~aG~~g~El~~Wiva~GAl~~~~~~ 405 (444)
T PRK13372 333 IWGTGGMSHQLQGPRA-----GLINEEFDNAFLDHLIA-DPEAAAEIP-HIDYVDEAGSEGIELVDWLIARGAMDDQAGG 405 (444)
T ss_pred EEecCcccCCCCCCCC-----ccchHHHHHHHHHHHHh-CHHHHHcCc-ccHHHHHcCCchHHHHHHHHHHhhhhccccc
Confidence 9999999999985432 26899999999999997 999999994 578899999999999999999999965332
Q ss_pred --------------eeEeccceeccceeee
Q 042295 239 --------------AEQIHQSWQLCSLSCS 254 (264)
Q Consensus 239 --------------~~~~~~~~~~~~~s~~ 254 (264)
.+.+|+.|. --.|++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~y~-~p~s~t 434 (444)
T PRK13372 406 ASPDAAADGATGRPPKVNHRFYH-VPASNT 434 (444)
T ss_pred cccccccccccccccceeeccee-cccccc
Confidence 467887763 335555
No 17
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=100.00 E-value=2.5e-43 Score=317.03 Aligned_cols=206 Identities=21% Similarity=0.294 Sum_probs=175.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEE-cCCCCCC----CCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHH
Q 042295 19 LQVRHFLKAWKEQVFLQKPNSILVI-SAHWETD----VPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKEL 93 (264)
Q Consensus 19 ~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~~----~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~ 93 (264)
..+.++++++++++++.+||+|||| |+|...+ .+.+.++..+....++++|...- ++ +++||++||++|++.
T Consensus 31 ~~~~~a~~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~--~~-~~~g~~~LA~~i~~~ 107 (277)
T cd07364 31 KPLFKGYQPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEFQPADEGYGPRP--VP-DVQGHPDLAWHIAQS 107 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceEEeeccccccCccccCCCC--CC-CCCCCHHHHHHHHHH
Confidence 3778999999999999999999999 8896543 45777777666676776664221 12 679999999999999
Q ss_pred HHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCC----CChHHHHHHHHHhccc-----ccCCeEEE
Q 042295 94 LRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPE----KDGTYHYNVGKALAPL-----KDEGVLII 161 (264)
Q Consensus 94 l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~----~~~~~~~~lG~aL~~~-----~d~~v~iI 161 (264)
+.++||| +....++++|||+||||++|+|+.+ +||||+|+|.. .|+++||+||++|+++ ||+||+||
T Consensus 108 ~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i~~~~rd~rV~iI 186 (277)
T cd07364 108 LILDDFD-MTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVESYDEDLKVAIW 186 (277)
T ss_pred HHHcCCC-EEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEE
Confidence 9999996 7777889999999999999999765 78999999877 5899999999999999 78999999
Q ss_pred EecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC
Q 042295 162 GSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE 235 (264)
Q Consensus 162 aSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~ 235 (264)
|||+|||||.... .+ .++++||+|+++++++ |.++|++++ ..+..+.+|+...|++||++++||.+.
T Consensus 187 aSG~lSH~L~~~~---~g--~~~~eFD~~i~~~l~~-d~~~l~~~~-~~~~~~~ag~~g~e~~~wi~~~GAl~~ 253 (277)
T cd07364 187 GTGGMSHQLQGER---AG--LINKEFDNRFLDKLIS-DPEGLAKMP-HIEYLREAGSEGIELVMWLIMRGALDE 253 (277)
T ss_pred ecCccccCCCCCC---cc--CchHHHHHHHHHHHHh-CHHHHHcCC-chHHHHHcCccchhHHHHHHHHhhhcc
Confidence 9999999997643 22 4589999999999997 999999995 346678899988899999999999965
No 18
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=5.5e-43 Score=314.61 Aligned_cols=200 Identities=21% Similarity=0.305 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEc-CC----CCCCCCeEEEecCCCccCC--CCCCccccccccCCCCCCHHHHHHHHHH
Q 042295 21 VRHFLKAWKEQVFLQKPNSILVIS-AH----WETDVPTVNVVRQNDTIYD--FYGFPEQLYKLKYPAPGAPDLAKRVKEL 93 (264)
Q Consensus 21 ~~~~l~~l~~~l~~~~Pd~IVviS-~H----w~~~~~~i~~~~~~~~~~D--~~gfP~~~y~~~y~~~g~~elA~~i~~~ 93 (264)
..++++++++++++.+||+||||| || |.+..+.|+++..++...| ++|+|+ +|+++||++||++|++.
T Consensus 33 ~~~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~~g~~~~~g~~~-----~~~~~g~~~LA~~i~~~ 107 (276)
T cd07949 33 FFDGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSYRNADEGWGIPA-----LAPFKGDPELSWHLIES 107 (276)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccccCcccccCCCC-----CCCCCCCHHHHHHHHHH
Confidence 369999999999999999999999 69 5565677888765554444 357775 57889999999999999
Q ss_pred HHhCCCCcccccCCCCCcceeEeeccccccCC--CCCeeeeeCCCCC----ChHHHHHHHHHhccc-----ccCCeEEEE
Q 042295 94 LRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA--NIPVCQLSLQPEK----DGTYHYNVGKALAPL-----KDEGVLIIG 162 (264)
Q Consensus 94 l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~--diPVV~is~~~~~----~~~~~~~lG~aL~~~-----~d~~v~iIa 162 (264)
+.++||| +..+.++++|||+||||++|+|+. ++||||||+|+.. ++++||+||++|+++ +|+||+|||
T Consensus 108 ~~~~g~d-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iia 186 (276)
T cd07949 108 LVEDEFD-ITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLG 186 (276)
T ss_pred HHHcCCC-eeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEE
Confidence 9999996 777889999999999999999986 4999999999775 889999999999998 568999999
Q ss_pred ecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchH--HHHHHhcccCC
Q 042295 163 SGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFY--PLHVAMGAAGE 235 (264)
Q Consensus 163 SG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~--pl~~a~Ga~~~ 235 (264)
||+|||||.... . ..|+++||+|++++++ +|.++|++++.+ ......++|++. +|++++||.+.
T Consensus 187 SG~lSH~l~~~~---~--g~~~~~fD~~~~~~l~-~d~~~L~~~~~~---~~~~~AG~~g~e~~~wi~~~GAl~~ 252 (276)
T cd07949 187 TGGLSHQLDGER---A--GFINKDFDRYCLDKMV-DNPEWLTKYSIE---ELVELAGTQGVEFLMWIAMRGALGD 252 (276)
T ss_pred eCccccCCCCCC---c--ccchHHHHHHHHHHHh-cCHHHHHcCCHH---HHHHHcccccHHHHHHHHHHHhhcc
Confidence 999999996432 2 2478999999999999 699999999622 123445567766 89999999965
No 19
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=6.3e-43 Score=314.80 Aligned_cols=225 Identities=17% Similarity=0.169 Sum_probs=177.4
Q ss_pred EEEEcCCCCCCCC--CCC------hHHHHHHHHHHHHhhcCCCCEEEEEc-CCCCCC----CCeEEEecCCCccCCCCCC
Q 042295 3 TFFISHGSPTLPI--DES------LQVRHFLKAWKEQVFLQKPNSILVIS-AHWETD----VPTVNVVRQNDTIYDFYGF 69 (264)
Q Consensus 3 ~~fisHG~P~~~~--~~~------~~~~~~l~~l~~~l~~~~Pd~IVviS-~Hw~~~----~~~i~~~~~~~~~~D~~gf 69 (264)
++++|| ||+++ ++. ..+.++++++++++++.+||+||||| +||.++ .+.+.++... ...||..|
T Consensus 7 a~~~sH--~P~i~~~~~~~~~~~~~~~~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~-~~g~~~~~ 83 (277)
T cd07368 7 GFMMPH--DPVMFVTPTAPPAAQREICWHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGD-VDGPYDPL 83 (277)
T ss_pred EeecCC--CccccCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEeccc-ccCCcccc
Confidence 578999 88775 331 37789999999999999999999997 688764 3445555443 35555545
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCC-----CCCeeeeeCCC----CCCh
Q 042295 70 PEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA-----NIPVCQLSLQP----EKDG 140 (264)
Q Consensus 70 P~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~-----diPVV~is~~~----~~~~ 140 (264)
|... +...+|+++||++|++.+.++||| +..+.++++|||+|+||++|+|+. ++|+|||++|+ ..++
T Consensus 84 ~~~~---~~~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~~p~~~~ 159 (277)
T cd07368 84 PGLP---RAVIENNEPLAHHIMQHGLEYGID-WAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGVDPFITS 159 (277)
T ss_pred CCCC---cccCcCCHHHHHHHHHHHHHcCCC-EeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEecccCCCCCH
Confidence 4421 245799999999999999999995 777789999999999999999854 77777777654 4678
Q ss_pred HHHHHHHHHhcc-----cccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchh
Q 042295 141 TYHYNVGKALAP-----LKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM 215 (264)
Q Consensus 141 ~~~~~lG~aL~~-----~~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ 215 (264)
++||+||++|++ ++|+||+|||||+|||||+...+ .+|+++||+|+++++++||.++|++++.+ ...
T Consensus 160 ~~~~~lG~al~~ai~~~~~d~rVliIaSG~LSH~l~~~~~-----~~~~~~fD~~~~~~l~~gd~~~L~~~~~~--~~~- 231 (277)
T cd07368 160 WRAHELGRVIGAAVEAWQGDERVAIIGSGGISHWVGTAEM-----GAVNEGFDREIMKLVAQGDLAALIALSDE--EIL- 231 (277)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEEcCcccCCCCCccc-----cccCHHHHHHHHHHHHcCCHHHHHhCCHH--HHH-
Confidence 999999999999 56899999999999999966532 37889999999999999999999999532 122
Q ss_pred cCCCCcc--hHHHHHHhcccCCCCceeEec
Q 042295 216 AHPSPEH--FYPLHVAMGAAGEDAKAEQIH 243 (264)
Q Consensus 216 ahp~~~h--~~pl~~a~Ga~~~~~~~~~~~ 243 (264)
...++|+ +++|++++||.++. +.+++.
T Consensus 232 ~~aG~gg~e~~~~~~~~Gal~~~-~~~vl~ 260 (277)
T cd07368 232 EDGGNGGMEIRNWACAMGALPAA-RGEVIA 260 (277)
T ss_pred HHcccccHHHHHHHHHHHhcCCC-CccEEE
Confidence 2233554 99999999999754 556543
No 20
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=7.8e-43 Score=314.18 Aligned_cols=237 Identities=20% Similarity=0.283 Sum_probs=186.8
Q ss_pred EEEEcCCCCCCCCCC-C---------hHHHHHHHHHHHHhhcCCCCEEEEE-cCCCCCC----CCeEEEecCCCccCCCC
Q 042295 3 TFFISHGSPTLPIDE-S---------LQVRHFLKAWKEQVFLQKPNSILVI-SAHWETD----VPTVNVVRQNDTIYDFY 67 (264)
Q Consensus 3 ~~fisHG~P~~~~~~-~---------~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~~----~~~i~~~~~~~~~~D~~ 67 (264)
++..|| ||++..+ + .++.++++++++++++.+||+|||| |+|+..+ .+.++++.......++.
T Consensus 7 a~~~sH--~P~i~~~~~~g~~~~~~~~~~~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~~~~~~~ 84 (284)
T PRK13366 7 SVYTSH--VPAIGAAIDLGKTGEPYWQPVFKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAEYQPADE 84 (284)
T ss_pred EeecCC--CCccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCceecCccc
Confidence 578899 8877653 1 3778999999999999999999999 9997653 34666665554444444
Q ss_pred CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCCC----Ch
Q 042295 68 GFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPEK----DG 140 (264)
Q Consensus 68 gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~~----~~ 140 (264)
+|-. .++. +++||++||++|++.+.++||| +....++++|||+|+||++|+|+.+ +||||||+|+.. ++
T Consensus 85 ~~g~--~~v~-~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~ 160 (284)
T PRK13366 85 GWGP--RPVP-KVIGHPDLAAHIAQSVIQDDFD-LTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSG 160 (284)
T ss_pred ccCC--CCCC-CCCCCHHHHHHHHHHHHHCCCC-EeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCH
Confidence 3321 2345 6899999999999999999996 7777789999999999999999765 999999999887 89
Q ss_pred HHHHHHHHHhccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchh
Q 042295 141 TYHYNVGKALAPL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM 215 (264)
Q Consensus 141 ~~~~~lG~aL~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ 215 (264)
++||+||++|+++ +|+||+|||||+|||||..++. ++ .+++||+++++.+++ |.++|.+++.+ . ..
T Consensus 161 ~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH~l~~p~~---g~--~~~~fD~~~l~~l~~-d~~~l~~l~~~-~--~~ 231 (284)
T PRK13366 161 RRCFALGQAIRRAVESYDEDLNVQIWGTGGMSHQLQGPRA---GL--INREWDNAFLDRLIA-DPDGLSKMPHI-D--YV 231 (284)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCC---CC--CcHHHHHHHHHHHhc-CHHHHHcCCHH-H--HH
Confidence 9999999999999 4789999999999999985432 22 269999999999976 99999999641 1 22
Q ss_pred cCCCCc--chHHHHHHhcccCC---CCceeEeccceeccceeeeE
Q 042295 216 AHPSPE--HFYPLHVAMGAAGE---DAKAEQIHQSWQLCSLSCSS 255 (264)
Q Consensus 216 ahp~~~--h~~pl~~a~Ga~~~---~~~~~~~~~~~~~~~~s~~~ 255 (264)
...++| +.+.|++|+||.++ +.+.+.+|+.|.. -+|++.
T Consensus 232 ~~AG~~G~e~~~Wi~~~gAl~~~~~~~~~~~~~~~~~~-~~~~~~ 275 (284)
T PRK13366 232 REAGSEGIELVMWLIARGAMSDVAGGPKPKVAHRFYHV-PASNTA 275 (284)
T ss_pred HHcccchHHHHHHHHHHHhhhcccccCCceEeeeceec-ccccch
Confidence 334455 56777999999865 4578889988742 356663
No 21
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=100.00 E-value=1.5e-42 Score=308.92 Aligned_cols=233 Identities=20% Similarity=0.248 Sum_probs=198.1
Q ss_pred EEcCCCCCCCCCCC--------hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccc
Q 042295 5 FISHGSPTLPIDES--------LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKL 76 (264)
Q Consensus 5 fisHG~P~~~~~~~--------~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~ 76 (264)
|.|| ||+++++. .+++++++++++++.+.+||+||||||||.+....|+++..+...+||+||+ .|++
T Consensus 1 ~~ph--~p~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~--~~~~ 76 (256)
T cd07951 1 LVPH--PPLLVPEVGGGEEAEIAATRAACEAAARRLAAARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFG--APEV 76 (256)
T ss_pred CCCC--CCcccccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccceeEeccCCceecchhhcC--CCcc
Confidence 5689 77776432 3678999999999988899999999999999888899998889999999997 4889
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCcccccCC--CCCcceeEeeccccccC-CCCCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 77 KYPAPGAPDLAKRVKELLRTSGFNHVKEDTK--RGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 77 ~y~~~g~~elA~~i~~~l~~~gid~~~~~~~--~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
+|++++|++||++|.+.+.+.|++ +..... +++|||+||||.+|+|. .++|||||+++ ..++++|++||++|+++
T Consensus 77 ~~~~~~d~~la~~l~~~l~~~g~~-~~~~~~~~~~~DHg~~vpl~~l~~~~~~~pvVpi~~~-~~~~~~~~~lG~aL~~~ 154 (256)
T cd07951 77 SFGVDLDLELVEEIAGEADKEGLP-VGALGERIPELDHGTLVPLYFLRKAGSDGKLVRIGLS-GLSPEELYAFGRALAAA 154 (256)
T ss_pred eEeeeCCHHHHHHHHHHhhhcCCC-cccccCCCCCCCchhhhhHHhhcccCCcCCeEEEecC-CCCHHHHHHHHHHHHHH
Confidence 999999999999999999999995 655433 69999999999999998 79999999997 67999999999999998
Q ss_pred ---ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHh
Q 042295 154 ---KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAM 230 (264)
Q Consensus 154 ---~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~ 230 (264)
++++|+|||||++|||+.... +.+..+++++||++++++|+++|.++|+++... .....+.|++.||.+++
T Consensus 155 ~~~~~~~vlii~SgdlsH~l~~~~--p~~~~~~a~~~D~~~~~~l~~~D~~~L~~~~~~----~~~~~~~~G~~~~~~l~ 228 (256)
T cd07951 155 AEELGRRVALIASGDLSHRLTEDA--PGGYDPRGPEFDAAIAEALAKGDVDALLALDPE----LAEEAGECGRRSWQVLA 228 (256)
T ss_pred HHhcCCcEEEEEecccccccCCCC--CCCCCcchHHHHHHHHHHHHcCCHHHHHhcCHH----HHHHHHhcChHHHHHHH
Confidence 478999999999999997542 445567899999999999999999999998432 11223579999999999
Q ss_pred cccCCC-CceeEeccceecc
Q 042295 231 GAAGED-AKAEQIHQSWQLC 249 (264)
Q Consensus 231 Ga~~~~-~~~~~~~~~~~~~ 249 (264)
|++... .++++++....+|
T Consensus 229 ~~~~~~~~~~~~l~y~~~~g 248 (256)
T cd07951 229 GALDGASVKGEVLSYEGPFG 248 (256)
T ss_pred HhccCCCccceeeeccCCcc
Confidence 998643 3677777766655
No 22
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=4.2e-41 Score=302.30 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEc-CCCCC----CCCeEEEecCCCccCCCCCC--ccccccccCCCCCCHHHHHHHHH
Q 042295 20 QVRHFLKAWKEQVFLQKPNSILVIS-AHWET----DVPTVNVVRQNDTIYDFYGF--PEQLYKLKYPAPGAPDLAKRVKE 92 (264)
Q Consensus 20 ~~~~~l~~l~~~l~~~~Pd~IVviS-~Hw~~----~~~~i~~~~~~~~~~D~~gf--P~~~y~~~y~~~g~~elA~~i~~ 92 (264)
+..++++++++++++.+||+||||| ||... ..+.|.++.......|+.+| |+ . .+++||++||++|.+
T Consensus 32 ~v~~a~~~~~~~v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~~g~~~~~g~~~----~-~~~~~~~~lA~~i~~ 106 (278)
T PRK13364 32 PFFDGFPPVREWLEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEYSNADEGWGIPT----L-APFKGDTELSWHIIE 106 (278)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCchHhhhccccCCeEEEeeCceecCChhhcCCCC----C-CCCCCCHHHHHHHHH
Confidence 3489999999999999999999998 89654 34678887777777776544 43 2 568999999999999
Q ss_pred HHHhCCCCcccccCCCCCcceeEeeccccccCCC--CCeeeeeCCCCC----ChHHHHHHHHHhccc-----ccCCeEEE
Q 042295 93 LLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN--IPVCQLSLQPEK----DGTYHYNVGKALAPL-----KDEGVLII 161 (264)
Q Consensus 93 ~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d--iPVV~is~~~~~----~~~~~~~lG~aL~~~-----~d~~v~iI 161 (264)
.+.++||| ++...++++|||+|+||++|+|+.+ +||||||+|+.. ++++||+||++|+++ +|+||+||
T Consensus 107 ~l~~~gid-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iI 185 (278)
T PRK13364 107 SLVEEEFD-ITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIASWPSDERVVVI 185 (278)
T ss_pred HHHHcCCC-eecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 99999996 8778889999999999999999976 889999998765 799999999999998 57899999
Q ss_pred EecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcch--HHHHHHhcccCC
Q 042295 162 GSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHF--YPLHVAMGAAGE 235 (264)
Q Consensus 162 aSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~--~pl~~a~Ga~~~ 235 (264)
|||+|||||... +.++. +++||+++++++++ |.++|++++.+ ......++|++ ++|++++||.+.
T Consensus 186 aSG~LSH~l~~~---p~G~~--~~~fD~~~l~~l~~-d~~~l~~~~~~---e~~~~AG~~g~Eir~wi~~~gAl~~ 252 (278)
T PRK13364 186 GTGGLSHQLDGE---RAGFI--NKDFDLQCMDSLVS-DPEWLTQYSNH---ELVELAGTQGVELLNWLAMRGALGG 252 (278)
T ss_pred EeCccccCCCCC---CcccC--CHHHHHHHHHHHHh-CHHHHHcCCHH---HHHHHcccccHHHHHHHHHHHhhcC
Confidence 999999999743 44554 49999999999999 99999999622 13455667877 999999999965
No 23
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=7.3e-41 Score=300.41 Aligned_cols=222 Identities=21% Similarity=0.299 Sum_probs=179.4
Q ss_pred EEEEcCCCCCCCC-CC---ChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-------CCeEEEecCCCccCCCCCCcc
Q 042295 3 TFFISHGSPTLPI-DE---SLQVRHFLKAWKEQVFLQKPNSILVISAHWETD-------VPTVNVVRQNDTIYDFYGFPE 71 (264)
Q Consensus 3 ~~fisHG~P~~~~-~~---~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-------~~~i~~~~~~~~~~D~~gfP~ 71 (264)
++++|| +.+.- ++ ..++.++|+++++++.+.+||+||||||||.+. ..+|+.+.....++|| |||+
T Consensus 7 ~~~~pH--~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i~~~~~~~p~gd~-g~~~ 83 (269)
T PRK13358 7 AFATSH--VLMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLVGTGDSDTPYGDM-DIPR 83 (269)
T ss_pred ehcccc--cccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEEEecCCCCCcccc-CCCc
Confidence 468899 42211 11 148889999999999888999999999998743 2356666666678887 9998
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCC----hHHHHHHH
Q 042295 72 QLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKD----GTYHYNVG 147 (264)
Q Consensus 72 ~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~----~~~~~~lG 147 (264)
++ ++||++||++|.+.+.+.|+| ++.+.++++|||+|+||++|+|+.++||||||+++..+ +++|++||
T Consensus 84 ~~------~~g~~~LA~~l~~~~~~~~~~-~a~~~~~~~DHg~~vPl~~l~~~~~~pvVpisv~~~~~p~~~~~~~~~lG 156 (269)
T PRK13358 84 EL------VPGHRAFAQAIALHRAADGFD-LAQAEELRPDHGVMIPLLFMDPGRRIPVVPVYVNINTDPFPSAKRCAALG 156 (269)
T ss_pred cc------CCCCHHHHHHHHHHHHHcCCC-eeeccccCCCcchhhhHHHhcCCCCCCEEEEEecccCCCCCCHHHHHHHH
Confidence 64 589999999999999999995 77777899999999999999999999999999997555 49999999
Q ss_pred HHhcccc------cCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCc
Q 042295 148 KALAPLK------DEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPE 221 (264)
Q Consensus 148 ~aL~~~~------d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~ 221 (264)
++|++++ ++||+|||||++||++...+ +.+++++||+|++++++++|.++|.++.++ +. ....++|
T Consensus 157 ~al~~~~~~~~~~~~rvlvIaSGdlSH~l~~~~-----~~~~~~~fD~~~~~~i~~~D~~~l~~~~~~--~~-~~~~G~g 228 (269)
T PRK13358 157 EVIRQAVEKDRPADERVAVIGTGGLSHWLGVPE-----HGEVNEDFDRMVMDALVSGDLEALVALGNE--EI-LEQGGNG 228 (269)
T ss_pred HHHHHHHHhhCCCCCcEEEEecCCccCCCCCcc-----ccccHHHHHHHHHHHHHcCCHHHHHhcCHH--HH-HHhcCcc
Confidence 9999973 57999999999999997432 247899999999999999999999988432 11 1234456
Q ss_pred ch--HHHHHHhcccCCCCceeEec
Q 042295 222 HF--YPLHVAMGAAGEDAKAEQIH 243 (264)
Q Consensus 222 h~--~pl~~a~Ga~~~~~~~~~~~ 243 (264)
.+ ++|++++|+.++ .+.+++.
T Consensus 229 ~~~~~~~~~~~ga~~g-~~~~~l~ 251 (269)
T PRK13358 229 GLEIRNWIMAAAAVPG-RRGEKIY 251 (269)
T ss_pred cHHHHHHHHHHhhcCC-CccceEE
Confidence 66 899999999875 4666654
No 24
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=100.00 E-value=9.4e-41 Score=300.41 Aligned_cols=218 Identities=20% Similarity=0.267 Sum_probs=175.4
Q ss_pred EEEcCCCCCCCCCCC----------hHHHHHHHHHHHHhhcCCCCEEEEEc-CCCCCC----CCeEEEecCCCc-cCCCC
Q 042295 4 FFISHGSPTLPIDES----------LQVRHFLKAWKEQVFLQKPNSILVIS-AHWETD----VPTVNVVRQNDT-IYDFY 67 (264)
Q Consensus 4 ~fisHG~P~~~~~~~----------~~~~~~l~~l~~~l~~~~Pd~IVviS-~Hw~~~----~~~i~~~~~~~~-~~D~~ 67 (264)
+..|| ||++.... +.+.++++++++++++.+||+||||| +|..++ .+.++++..... .+|+.
T Consensus 8 ~~~sH--~P~ig~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~~~~~d~~ 85 (277)
T cd07950 8 IGSSH--TPTIGFAYDKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDSYEVADEG 85 (277)
T ss_pred hhcCC--CCccCcccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEecccccccccc
Confidence 45799 87663221 37889999999999999999999998 664433 345665544433 66777
Q ss_pred CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCC---C-Ch
Q 042295 68 GFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPE---K-DG 140 (264)
Q Consensus 68 gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~---~-~~ 140 (264)
++|+++ ++++||++||++|++.+.++||| +..+.++++|||+||||++|+|+.+ +|||+|++|.. + ++
T Consensus 86 ~~~~~~----~~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~~~l~~~ 160 (277)
T cd07950 86 GGPRDL----PPIRGHAALAQHIAESLVADEFD-LTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQFPLPTA 160 (277)
T ss_pred cCCccC----CCCCCCHHHHHHHHHHHHhcCCC-eeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeEecCCCCH
Confidence 788765 57899999999999999999996 7778899999999999999999876 88999998753 3 79
Q ss_pred HHHHHHHHHhccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchh
Q 042295 141 TYHYNVGKALAPL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKM 215 (264)
Q Consensus 141 ~~~~~lG~aL~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ 215 (264)
++||+||++|+++ +|+||+|||||+|||||... +.++.+ ++||+++++++++ |.++|++++.+ .....
T Consensus 161 ~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH~l~~~---~~g~~~--~~~D~~f~~~l~~-d~~~l~~~~~~-~~~~~ 233 (277)
T cd07950 161 RRCYKLGQALRRAIESYPEDLKVAVVGTGGLSHQVHGE---RAGFNN--TEWDMEFLDLIEN-DPESLAAMTHA-DYATL 233 (277)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCEEEEEcCccccCCCCC---CCCCCC--HHHHHHHHHHHHh-CHHHHHcCCHH-HHHHH
Confidence 9999999999999 67899999999999999743 233333 8899999999996 99999999643 11245
Q ss_pred cCCCCcchHHHHHHhcccCC
Q 042295 216 AHPSPEHFYPLHVAMGAAGE 235 (264)
Q Consensus 216 ahp~~~h~~pl~~a~Ga~~~ 235 (264)
++.+.-+.+.|+.++||+++
T Consensus 234 aG~~~~E~~~wi~~~gal~~ 253 (277)
T cd07950 234 GGAEGAEVIMWLIMRGALSD 253 (277)
T ss_pred cCcchHHHHHHHHHHHhhcC
Confidence 55555578999999999865
No 25
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=7.4e-40 Score=299.72 Aligned_cols=227 Identities=17% Similarity=0.195 Sum_probs=180.1
Q ss_pred EEEcCCCCCCCC--CCC------hHHHHHHHHHHHHhhcCCCCEEEEE-cCCCCC----CCCeEEEecCCCccCCCC---
Q 042295 4 FFISHGSPTLPI--DES------LQVRHFLKAWKEQVFLQKPNSILVI-SAHWET----DVPTVNVVRQNDTIYDFY--- 67 (264)
Q Consensus 4 ~fisHG~P~~~~--~~~------~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~----~~~~i~~~~~~~~~~D~~--- 67 (264)
+.+|| ||+++ ++. ..+.++++++++++++.+||+|||| |+||.. ..+.|+++..+...+||.
T Consensus 8 ~~~sH--~P~i~~~p~~~~~~~~~~~~~a~~~l~~~v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~G~~~~~~ 85 (329)
T cd07369 8 IGMSH--APGALGWPDAPSPDVRARTEEATLKLGRTLTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHSGPADQLM 85 (329)
T ss_pred eecCC--CccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhhccccCccEEEeecceeeccchhcc
Confidence 56899 88775 441 4788999999999999999999997 999873 345677766555555643
Q ss_pred -CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC----CChHH
Q 042295 68 -GFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE----KDGTY 142 (264)
Q Consensus 68 -gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~----~~~~~ 142 (264)
+|.- ..+++++||++||++|++.+.+.||| +..+.++++|||+|+||++|+|+.++||||||+|+. +++++
T Consensus 86 ~~~~~---~~~~~~~gd~eLA~~I~~~l~~~G~d-va~~~~~~~DHG~~vPL~~l~p~~~ipvVpI~in~~~~p~~~~~r 161 (329)
T cd07369 86 EALRV---PKKHYFPGNPEVAEQLLRALVHDSFD-CARMGEIEYGNNLLVPWKLMKPDLDVSVIPIYTNVFSPPLMKYSR 161 (329)
T ss_pred ccCCC---CcccCCCCCHHHHHHHHHHHHHCCCC-eeecCCcCCCccceeeHHHhcCCCCCcEEEEEEeccCCCCCCHHH
Confidence 3321 13578899999999999999999996 777778999999999999999999999999999887 78999
Q ss_pred HHHHHHHhcccc-----cCCeEEEEecCCcccc-----------------cccccCCCCC--------------------
Q 042295 143 HYNVGKALAPLK-----DEGVLIIGSGSATHNL-----------------KALQFDGDSV-------------------- 180 (264)
Q Consensus 143 ~~~lG~aL~~~~-----d~~v~iIaSG~lsH~l-----------------~~~~~~~~~~-------------------- 180 (264)
||+||++|++++ |+||+|||||+|||++ ...+ ++++
T Consensus 162 ~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~~~~~~~~~~~~~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~ 239 (329)
T cd07369 162 AYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWNPNQPETDPFLQRMKEYQ--TYGKPVLEKDPNLFVDLAAYEIEM 239 (329)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCccccccchhhhhhhhhccccC--cCCcCcchhhhhhhhhhhhhhhhh
Confidence 999999999985 4899999999999943 3222 4444
Q ss_pred -----------cc-hHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcc--hHHHHHHhcccCCCCceeEe
Q 042295 181 -----------VS-WASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEH--FYPLHVAMGAAGEDAKAEQI 242 (264)
Q Consensus 181 -----------~~-~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h--~~pl~~a~Ga~~~~~~~~~~ 242 (264)
.| .+++||+++++++++||.++|.+++.+ ...+..+.|. .+.|++++||.++. +.+++
T Consensus 240 ~~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd~~~l~~~~~~---~~~~~aG~~g~e~~~wi~~~gAl~~~-~~~~~ 311 (329)
T cd07369 240 AKKNQWPLNSKHPLVNAAWDRKFLKAYCRGDSEWLKNLTYE---EVEEEGGHGGHEILNWVAVMGAMDGK-KAKLL 311 (329)
T ss_pred hhhhcccccccCCccCHHHHHHHHHHHHcCCHHHHHcCCHH---HHHHHcccchHHHHHHHHHHHhcCCC-CcceE
Confidence 55 599999999999999999999999632 1233344554 45599999999654 44544
No 26
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=6.2e-39 Score=293.74 Aligned_cols=207 Identities=18% Similarity=0.195 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcC-CCCC----CCCeEEEecCCCccCCCCCC------cc------ccccccCCCC
Q 042295 19 LQVRHFLKAWKEQVFLQKPNSILVISA-HWET----DVPTVNVVRQNDTIYDFYGF------PE------QLYKLKYPAP 81 (264)
Q Consensus 19 ~~~~~~l~~l~~~l~~~~Pd~IVviS~-Hw~~----~~~~i~~~~~~~~~~D~~gf------P~------~~y~~~y~~~ 81 (264)
....++++++++++++.+||+|||||| |.+. ..+.|+++.......|+... |. ..-+++++++
T Consensus 69 ~~~~~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (328)
T cd07366 69 ARCQAALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEAAAGYAPDEARTYP 148 (328)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhccccccccccccccccCCCCCcCCC
Confidence 366799999999999999999999999 6543 34577777666666664320 00 1123667889
Q ss_pred CCHHHHHHHHHHHHhCCCCcccc----cCCCCCcceeEeeccccccCCCCCeeeeeCCCCC-----ChHHHHHHHHHhcc
Q 042295 82 GAPDLAKRVKELLRTSGFNHVKE----DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK-----DGTYHYNVGKALAP 152 (264)
Q Consensus 82 g~~elA~~i~~~l~~~gid~~~~----~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~-----~~~~~~~lG~aL~~ 152 (264)
||++||++|++.+.+.||| +.. +.++++|||+|+|+++++|+.++||||||+|... ++++||+||++|++
T Consensus 149 gd~eLA~~I~~~l~~~G~d-v~~~~~~~~~~~lDHG~~~~l~~~~p~~~iPVVpisin~~~~p~~ps~~r~y~lG~aL~~ 227 (328)
T cd07366 149 CHPELARHLIKHTVADGFD-VAALDHLPDTVGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSARRCFEFGRAVAR 227 (328)
T ss_pred CCHHHHHHHHHHHHHcCCC-eeeecccCcccCCCcchhhHHHHhcCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999996 665 3345889999999999999999999999999754 77999999999999
Q ss_pred c-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHH
Q 042295 153 L-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLH 227 (264)
Q Consensus 153 ~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~ 227 (264)
+ +|+||+|||||+||||| ++++||+|+++++++||.++|++++.+. ...++|++++|+
T Consensus 228 ai~~~~~d~rV~IIaSGgLSH~l------------~~~eFD~~~l~~l~~gD~~~L~~~~~~~-----~~aG~~elr~wi 290 (328)
T cd07366 228 AIRSWPGDARVGVIASGGLSHFV------------IDEEFDRRILDALRNRDAEFLSSLPEAH-----LQSGTSELKNWI 290 (328)
T ss_pred HHHhcCCCCCEEEEEeCccccCC------------ChHHHHHHHHHHHHcCCHHHHHcCCHHH-----HhccchhHHHHH
Confidence 8 48999999999999998 3499999999999999999999996442 124579999999
Q ss_pred HHhcccCCC-CceeEec
Q 042295 228 VAMGAAGED-AKAEQIH 243 (264)
Q Consensus 228 ~a~Ga~~~~-~~~~~~~ 243 (264)
+++||.+.. .+.+++.
T Consensus 291 ~~~GAl~~~~~~~~vl~ 307 (328)
T cd07366 291 AAAGALDDLGLKMTSVD 307 (328)
T ss_pred HHHHhhcCCCcceeEEE
Confidence 999999653 3455543
No 27
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=1.1e-38 Score=287.06 Aligned_cols=205 Identities=19% Similarity=0.256 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEE-cCCCCC----CCCeEEEecCCCc-cCCCCCCccccccccCCCCCCHHHHHHHHH
Q 042295 19 LQVRHFLKAWKEQVFLQKPNSILVI-SAHWET----DVPTVNVVRQNDT-IYDFYGFPEQLYKLKYPAPGAPDLAKRVKE 92 (264)
Q Consensus 19 ~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~----~~~~i~~~~~~~~-~~D~~gfP~~~y~~~y~~~g~~elA~~i~~ 92 (264)
.++.++++++++++++.+||+|||| |+|... ..+.++++..... ..|| |.+.. -..+++||++||++|++
T Consensus 31 ~~~~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~~~~~~-g~~~~---~~~~~~g~~eLA~~i~~ 106 (279)
T PRK13365 31 KPLFDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERFPVADE-GAGLR---PLPPIRGDVQLQAHIAE 106 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEeccccccccc-ccCCC---CCCCCCCCHHHHHHHHH
Confidence 4788999999999999999999999 778443 3345665543332 3332 12221 11367999999999999
Q ss_pred HHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCCC----ChHHHHHHHHHhccc-----ccCCeEE
Q 042295 93 LLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPEK----DGTYHYNVGKALAPL-----KDEGVLI 160 (264)
Q Consensus 93 ~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~~----~~~~~~~lG~aL~~~-----~d~~v~i 160 (264)
.+.++||| +....++++|||+||||++|+|+.+ +|||||++|+.. ++++||+||++|+++ +|+||+|
T Consensus 107 ~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rV~i 185 (279)
T PRK13365 107 CLVNDEFD-LTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQYPLPTARRCYRLGQALRRAIESYPEDLRVVV 185 (279)
T ss_pred HHHHcCCC-eeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEE
Confidence 99999996 7777789999999999999999876 999999998654 789999999999998 3789999
Q ss_pred EEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC
Q 042295 161 IGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE 235 (264)
Q Consensus 161 IaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~ 235 (264)
||||+|||||.... .++. .++||++++++++ +|.++|++++.+ .....+....-+.+.|++++||++.
T Consensus 186 IaSG~LSH~l~~~~---~g~~--~~~~D~~f~~~l~-~d~~~l~~~~~~-~~~~~aG~~g~ei~~wi~~~gal~~ 253 (279)
T PRK13365 186 VGTGGLSHQIHGER---SGFN--NTEWDMEFLDRFQ-HAPETLTDLTHT-DYVRLGGAESVEQIMWLAMRGALGG 253 (279)
T ss_pred EEeCccccCCCCCC---ccCC--CHHHHHHHHHHHh-hCHHHHHcCCHH-HHHHHcCcccHHHHHHHHHHHhhcC
Confidence 99999999998643 3333 3899999999997 699999999642 2234555555578999999999865
No 28
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=100.00 E-value=1.6e-38 Score=296.68 Aligned_cols=203 Identities=21% Similarity=0.311 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEE-cCCCCC----CCCe--EEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHH
Q 042295 20 QVRHFLKAWKEQVFLQKPNSILVI-SAHWET----DVPT--VNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKE 92 (264)
Q Consensus 20 ~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~----~~~~--i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~ 92 (264)
+..++++.+++++++.+||+|||| ++|... ..++ |+++++.. .|||+|||+++ |+++|+++||++|++
T Consensus 32 ~v~~~~~~~r~~l~~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~~-~~D~~g~P~~l----y~~~G~peLA~~I~~ 106 (420)
T PRK13367 32 PIFESFAPLRRWLEEKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQYA-VADEGGGPRDL----PPVRGHAALSRHIGA 106 (420)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEeccccc-ccccCCCcccc----CCCCCCHHHHHHHHH
Confidence 667899999999999999999999 558553 3444 55555544 79999999987 589999999999999
Q ss_pred HHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCC---C-ChHHHHHHHHHhcccc-----cCCeEE
Q 042295 93 LLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPE---K-DGTYHYNVGKALAPLK-----DEGVLI 160 (264)
Q Consensus 93 ~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~---~-~~~~~~~lG~aL~~~~-----d~~v~i 160 (264)
.|.++||| ++.+.++++|||+||||++|+|+.+ +|||||++|.. + |+++||+||++|++++ |+||+|
T Consensus 107 ~L~~~gfD-~a~~~~~~lDHG~~VPL~~l~p~ad~~P~~VVPi~invvq~Plps~~r~~~LG~AL~~aie~~~~d~rVlI 185 (420)
T PRK13367 107 SLMADEFD-MSFFQDKPLDHGLFSPLSALLPHDDGWPVQVVPLQVGVLQFPIPSARRCYKLGQALRRAIESYPEDLKVAI 185 (420)
T ss_pred HHHhcCCC-eecccCCCCCcchhhhHHHhCCccccCCCceeeeeeceeecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEE
Confidence 99999997 8888999999999999999999875 77999988864 2 7999999999999995 689999
Q ss_pred EEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC
Q 042295 161 IGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE 235 (264)
Q Consensus 161 IaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~ 235 (264)
||||+|||||..... ++. +++||+++++++++ |.++|.+++. ....+.+..+.-+++.|++++||.+.
T Consensus 186 IgSGgLSH~L~~~~~---g~~--n~~wD~~Fld~L~~-d~e~L~~~~~-~e~~~~aG~~g~Ei~~Wl~a~GAL~~ 253 (420)
T PRK13367 186 VATGGLSHQVHGERC---GFN--NPEWDAQFLDLLVN-DPERLTEMTL-AEYATLGGMEGAEVIMWLIMRGALSA 253 (420)
T ss_pred EEeCccccCCCCCCC---CCC--CHHHHHHHHHHHHh-CHHHHHcCCH-HHHHHHcCCchHHHHHHHHHHhhhcc
Confidence 999999999975432 222 38899999999986 9999999953 23445555555579999999999865
No 29
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=2.6e-38 Score=290.21 Aligned_cols=207 Identities=14% Similarity=0.198 Sum_probs=170.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCCC-CC----CCCeEEEecCCCccCCCCCC--------------ccccccccCC
Q 042295 19 LQVRHFLKAWKEQVFLQKPNSILVISAHW-ET----DVPTVNVVRQNDTIYDFYGF--------------PEQLYKLKYP 79 (264)
Q Consensus 19 ~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw-~~----~~~~i~~~~~~~~~~D~~gf--------------P~~~y~~~y~ 79 (264)
....++++++++++++.+||+|||||||. .. ..+.|+++.......|+..| |...-+++++
T Consensus 71 ~~~~~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 150 (335)
T PRK13363 71 AACEAAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETT 150 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcC
Confidence 36679999999999999999999999975 33 24777777766667665443 2233346788
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccc----cCCCCCcceeEeeccccccCCCCCeeeeeCCCCCC-----hHHHHHHHHHh
Q 042295 80 APGAPDLAKRVKELLRTSGFNHVKE----DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKD-----GTYHYNVGKAL 150 (264)
Q Consensus 80 ~~g~~elA~~i~~~l~~~gid~~~~----~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~-----~~~~~~lG~aL 150 (264)
++||++||++|++.+.++||| +.. +.++++|||+|+||++++|+.++|||||++|...+ +++||+||++|
T Consensus 151 ~~gd~eLA~~I~~~l~~~G~d-~~~~~~~~~~~glDHG~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL 229 (335)
T PRK13363 151 YPVVPELARHMIRRLVDDGFD-ITALDRLPDGEGEGHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSL 229 (335)
T ss_pred CCCCHHHHHHHHHHHHHcCCC-eeeecccccccCCCccchhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHH
Confidence 999999999999999999996 663 34567999999999999999999999999997544 59999999999
Q ss_pred ccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHH
Q 042295 151 APL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYP 225 (264)
Q Consensus 151 ~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~p 225 (264)
+++ +|+||+|||||+||||+. +++||+|++++|+++|.+.|++++.+ .. ..++|++++
T Consensus 230 ~~~i~~~~~d~rVlIIaSGdLSH~l~------------~~efD~~~l~~l~~~D~~~L~~~~~~----~~-~aG~~eir~ 292 (335)
T PRK13363 230 RRAIRSWPEDARVAVIASGGLSHFVI------------DEELDRLIIDAIRAKDFAALASLDEA----IL-QSGTSEIKN 292 (335)
T ss_pred HHHHHhcCcCCCEEEEEeCccccCCc------------HHHHHHHHHHHHHcCCHHHHHccCHH----HH-HhCchhHHH
Confidence 998 468999999999999984 38999999999999999999999643 11 346799999
Q ss_pred HHHHhcccCC-CCceeEec
Q 042295 226 LHVAMGAAGE-DAKAEQIH 243 (264)
Q Consensus 226 l~~a~Ga~~~-~~~~~~~~ 243 (264)
|++++||.++ +.+.+++.
T Consensus 293 wi~~~GAl~~~~~~~evls 311 (335)
T PRK13363 293 WIAVAGALDDAGLDMTWVD 311 (335)
T ss_pred HHHHHHhhccCCCCceEEE
Confidence 9999999975 34556654
No 30
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=100.00 E-value=5.6e-38 Score=286.00 Aligned_cols=221 Identities=19% Similarity=0.262 Sum_probs=180.2
Q ss_pred EEEEcCCCCCCCCCCC-----hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-----CCeEEEecCCCccCCCCCCccc
Q 042295 3 TFFISHGSPTLPIDES-----LQVRHFLKAWKEQVFLQKPNSILVISAHWETD-----VPTVNVVRQNDTIYDFYGFPEQ 72 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~-----~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-----~~~i~~~~~~~~~~D~~gfP~~ 72 (264)
++..|| +|.+..... .+..++++++++++++.+||+||||||||... .++|+++......+||.+|+..
T Consensus 5 ~~~~sH-~p~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~~~p~g~ 83 (310)
T cd07365 5 LICMSH-SPLLGFNDPAPEVVAEVDAAFAAARAFVAAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDYGTLAGP 83 (310)
T ss_pred eeeeCC-CcccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccCCceEeeccCccccccccCCCC
Confidence 356678 443322111 36679999999999999999999999997663 3578888878889999998763
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCC-CCCeeeeeCCCC----CChHHHHHHH
Q 042295 73 LYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA-NIPVCQLSLQPE----KDGTYHYNVG 147 (264)
Q Consensus 73 ~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~-diPVV~is~~~~----~~~~~~~~lG 147 (264)
.++|++||++|.+.+.+.||| ++...++++|||+||||+||++.. ++|||||++|.. .++++|++||
T Consensus 84 -------~~~d~eLA~~L~~~~~~~g~d-~a~~~~~~lDHg~~VPL~fL~~~~~~~pVVPI~vn~~~~P~~s~~r~~~lG 155 (310)
T cd07365 84 -------LNVPRDLAEDLARHVLDSGID-VAISHRMQVDHGFTQPLEELFGGLDRYPVIPIFVNSVAPPLAPMRRARALG 155 (310)
T ss_pred -------CCCCHHHHHHHHHhhhhcCCC-hhhccCCCCCcchHhhHHHHhCCCCCCeEEEEEecCCCCCCCCHHHHHHHH
Confidence 467999999999999999995 777788999999999999999874 699999999954 5789999999
Q ss_pred HHhcccc---cCCeEEEEecCCcccccccc--------------------------------------cCCCCCcchHHH
Q 042295 148 KALAPLK---DEGVLIIGSGSATHNLKALQ--------------------------------------FDGDSVVSWASE 186 (264)
Q Consensus 148 ~aL~~~~---d~~v~iIaSG~lsH~l~~~~--------------------------------------~~~~~~~~~~~~ 186 (264)
++|+++. ++||+|||||+|||++.... .+++++.|.+++
T Consensus 156 ~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~~~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~~p~~~~ 235 (310)
T cd07365 156 EAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAERLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTLMPLNPE 235 (310)
T ss_pred HHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHHHHHHhcccchHHHHHHHHhhhhhhhhhcccCcccCCCCCHH
Confidence 9999973 67999999999999942111 246677889999
Q ss_pred HHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcch--HHHHHHhcccCC
Q 042295 187 FDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHF--YPLHVAMGAAGE 235 (264)
Q Consensus 187 FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~--~pl~~a~Ga~~~ 235 (264)
||+++++++++||.++|++++.+ ......+.|++ ++|++++||...
T Consensus 236 fD~~~l~~~~~gd~~~l~~~~~~---~~~~~aG~~g~Ei~~w~~~~gal~~ 283 (310)
T cd07365 236 WDRAFLDLLASGDLAALDAMTND---EIAAQAGNSAHEVRTWVAAFAALAA 283 (310)
T ss_pred HHHHHHHHHHcCCHHHHHcCCHH---HHHHHhccccHHHHHHHHHHHHhhh
Confidence 99999999999999999999643 12344556777 999999999863
No 31
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=100.00 E-value=6.7e-38 Score=285.81 Aligned_cols=218 Identities=19% Similarity=0.254 Sum_probs=179.0
Q ss_pred EEEcCCCCCCCCCCC-----hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCC-----CCeEEEecCCCccCCCCCCcccc
Q 042295 4 FFISHGSPTLPIDES-----LQVRHFLKAWKEQVFLQKPNSILVISAHWETD-----VPTVNVVRQNDTIYDFYGFPEQL 73 (264)
Q Consensus 4 ~fisHG~P~~~~~~~-----~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~-----~~~i~~~~~~~~~~D~~gfP~~~ 73 (264)
+..|| +|.+-..+. ....++|+++++++++.+||+||||||||.+. .+.|+++......+||.+|+..
T Consensus 6 ~~~sH-~P~~~~~~~~~~~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~~~~~g~- 83 (313)
T PRK13370 6 VCLSH-SPLVGYVDPAQEVLAEVNAVIAAAREFVAAFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDYGTAAGP- 83 (313)
T ss_pred eecCC-CCccCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcccccccccCCceEeccCCCcCcccccCCCC-
Confidence 34577 554433221 36679999999999999999999999976554 5688888888889999998753
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCC-CCCeeeeeCCC----CCChHHHHHHHH
Q 042295 74 YKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEA-NIPVCQLSLQP----EKDGTYHYNVGK 148 (264)
Q Consensus 74 y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~-diPVV~is~~~----~~~~~~~~~lG~ 148 (264)
.++|++||++|.+.+.+.||| ++.+.++++|||+|+||++|+|+. ++|||||++|+ ..++++|++||+
T Consensus 84 ------~~~d~eLA~~i~~~~~~~g~d-~a~~~~~~lDHG~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~r~~~lG~ 156 (313)
T PRK13370 84 ------LPVPSDLAEALAEAVLDSGID-VAVSYRMQVDHGFAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFRRVRLLGE 156 (313)
T ss_pred ------CCCCHHHHHHHHHHhHhcCCC-hhhcCCcCCCEeHHHHHHHhcCCCCCceEEEEeecCCCCCcCCHHHHHHHHH
Confidence 588999999999999999997 777788999999999999999874 59999999996 357899999999
Q ss_pred Hhcccc---cCCeEEEEecCCcccccccc--------------------------------------cCCCCCcchHHHH
Q 042295 149 ALAPLK---DEGVLIIGSGSATHNLKALQ--------------------------------------FDGDSVVSWASEF 187 (264)
Q Consensus 149 aL~~~~---d~~v~iIaSG~lsH~l~~~~--------------------------------------~~~~~~~~~~~~F 187 (264)
+|+++. ++||+|||||+|||++.... .+++++.|.+++|
T Consensus 157 aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~erl~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~p~~~~~ 236 (313)
T PRK13370 157 AVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRERLIAGRNPTPEERAARQQRVIAAARIFAAGQSALHPLNPEW 236 (313)
T ss_pred HHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHHHHccCCccHHHHHHHHhhHHhhhhhcccCcccCCCCCHHH
Confidence 999962 78999999999999842111 2467778999999
Q ss_pred HHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcc--hHHHHHHhccc
Q 042295 188 DCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEH--FYPLHVAMGAA 233 (264)
Q Consensus 188 D~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h--~~pl~~a~Ga~ 233 (264)
|+++++.+++||.++|.+++.+ ......+.|+ +++|++|+||.
T Consensus 237 D~~~l~~l~~gd~~~l~~~~~~---~~~~~aG~~g~E~r~w~~~~gal 281 (313)
T PRK13370 237 DRAFLDLLESGDLAALDAWTNE---EITREAGKSAHEIRTWVAAFAAL 281 (313)
T ss_pred HHHHHHHHHcCCHHHHhcCCHH---HHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999999999643 1223355666 99999999998
No 32
>PRK13373 putative dioxygenase; Provisional
Probab=100.00 E-value=2e-34 Score=261.18 Aligned_cols=213 Identities=17% Similarity=0.182 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEE-cCCCCCC----CCeEEEecCCCccCCCCCC---ccccccccCCCCCCHHHHHHHH
Q 042295 20 QVRHFLKAWKEQVFLQKPNSILVI-SAHWETD----VPTVNVVRQNDTIYDFYGF---PEQLYKLKYPAPGAPDLAKRVK 91 (264)
Q Consensus 20 ~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~~----~~~i~~~~~~~~~~D~~gf---P~~~y~~~y~~~g~~elA~~i~ 91 (264)
+..++++++++++++.+||+|||| ++||..+ .++|+++......+|+.|. |+- ...-+.+|+++||++|+
T Consensus 30 ~v~~a~~~ir~~i~e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g~~~~~g~~~~~--~~~~~~~g~~elA~~l~ 107 (344)
T PRK13373 30 RLLQAADRLGRSLDAARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPGPATQWLEALRL--TRQERFGGAPEIAERLL 107 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEccchhhhhccccCCceEEEecccccCCccccccccCC--CCCCCCCCCHHHHHHHH
Confidence 667999999999999999999999 7798753 4556665544444555531 110 11236799999999999
Q ss_pred HHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC----ChHHHHHHHHHhcccc-----cCCeEEEE
Q 042295 92 ELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK----DGTYHYNVGKALAPLK-----DEGVLIIG 162 (264)
Q Consensus 92 ~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~----~~~~~~~lG~aL~~~~-----d~~v~iIa 162 (264)
+.+.++||| ++.+.++.+|||+++||++|+|+..+|||||.+|+.. +++||++||++|+++. |+||+|||
T Consensus 108 ~~l~~~gfD-va~s~~m~vDHg~~vPl~~l~~~~~~pvVPV~vN~~~~P~p~~~R~~~lG~ai~~ai~~~~~d~rV~~~~ 186 (344)
T PRK13373 108 RSLVADGYD-VARMGEIEYGNNLMVPWKLMAPRSAPAIIPVFTNVFSPPVMPYRRAYAFGAALRNAAEALDADLRVAFMA 186 (344)
T ss_pred HHHHHcCCC-eeeeeceeCCcceeeeHHHhCCCCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999999998 8888999999999999999999988899999999853 6799999999999972 58999999
Q ss_pred ecCCcccccccc----------------------------------------------cCCCCCcc-hHHHHHHHHHHHH
Q 042295 163 SGSATHNLKALQ----------------------------------------------FDGDSVVS-WASEFDCWLKDAL 195 (264)
Q Consensus 163 SG~lsH~l~~~~----------------------------------------------~~~~~~~~-~~~~FD~~~~~~l 195 (264)
||+|||++.-.. ++.....+ .+++||+++++.+
T Consensus 187 sGgLSH~p~~~~~~~p~~~~~l~~~~~~q~~G~~~~~r~~~~~r~~~~~~i~~~~r~~~~~~~~~~~iN~ewD~~fLd~l 266 (344)
T PRK13373 187 TGGMSHWPPFWNDSSPEADAFLARMKAFQTHGKSVLEKDPHLLRDLAAYEIEMAERNQWPLNSPHPLVNEAWDRQMLDAL 266 (344)
T ss_pred cCcccCCCcccccCchhhhhhhhccccccccCCCchhhhhhhhhhhhhhhhhHHHHhhccccccccccCHHHHHHHHHHH
Confidence 999999753200 01111224 8899999999999
Q ss_pred HcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCC
Q 042295 196 LQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED 236 (264)
Q Consensus 196 ~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~ 236 (264)
++||.+.|.+++.+ ...+.+..+.-.++.|+.++||+++.
T Consensus 267 ~~gD~e~L~~~t~~-e~~~~~G~gg~Ei~~Wiaa~gAlg~~ 306 (344)
T PRK13373 267 ARGDVEFLCGLQYE-DVKRDGGHGGQEIINWIELMGAMKGA 306 (344)
T ss_pred HcCCHHHHHcCCHH-HHHHHcCcccHHHHHHHHHHHhccCC
Confidence 99999999999642 22344544455699999999999754
No 33
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=5.7e-23 Score=175.60 Aligned_cols=223 Identities=17% Similarity=0.217 Sum_probs=171.2
Q ss_pred EEEEcCCCCCCCCCCC---hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCC
Q 042295 3 TFFISHGSPTLPIDES---LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYP 79 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~---~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~ 79 (264)
-|.++|| +-+.-+++ ..+.++++++++.+ ..++++||||||.......+++.-...+++-++.+-..- ++..
T Consensus 5 iyv~PHg-dEii~~~~~e~~~l~kA~k~i~~~~--~~seT~VvIsPHgi~ldd~iaviys~~l~g~~~~~k~~~--i~~e 79 (261)
T COG3885 5 IYVIPHG-DEIIDPEDEESRKLNKAIKEIASDD--KGSETYVVISPHGIRLDDYIAVIYSEYLSGLPYRTKHHP--IRKE 79 (261)
T ss_pred EEeccCC-ccccCCchhHHHHHHHHHHHHHccc--CCCceEEEEcCCceeeechhhHHhHHhhcccccccccCc--chhh
Confidence 4789997 33433332 57889999998885 349999999999877666666554444444334332222 4444
Q ss_pred CCCCHHHHHHHHHHHHhCCCCccc---c------cCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHh
Q 042295 80 APGAPDLAKRVKELLRTSGFNHVK---E------DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKAL 150 (264)
Q Consensus 80 ~~g~~elA~~i~~~l~~~gid~~~---~------~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL 150 (264)
...|.+||..|.+....+ | |+. . ..+..||||.++||+|+- .-.||.+.-.. ++-++.++||..|
T Consensus 80 y~~dreLa~~I~~~a~g~-~-p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk---~rrIV~lt~ar-l~~~~l~~Fg~~l 153 (261)
T COG3885 80 YKNDRELADKIYEEAKGQ-F-PLVCITFSILKGNYSRCPLDWGSLIPLYFLK---RRRIVLLTPAR-LSREILVKFGDNL 153 (261)
T ss_pred hhccHHHHHHHHHHhccC-C-ceEEEechhhcCcCCccccccccccchhhcc---ceeEEEechhh-ccHHHHHHHHHHH
Confidence 577999999999998765 6 432 1 145789999999999994 55688888775 9999999999999
Q ss_pred cccc---cCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHH
Q 042295 151 APLK---DEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLH 227 (264)
Q Consensus 151 ~~~~---d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~ 227 (264)
.++- +++|.+|.|++.+|.....+ |+|+.+.+++||+.+++.+.+||.++|++++.+ -.+.+.+|.|++++
T Consensus 154 ~~~le~~~~ki~lIiSaD~aHth~edG--PYGYs~~se~yDk~iv~~lks~n~e~l~~iD~~----~I~~Akpdsy~sll 227 (261)
T COG3885 154 GKALEEYERKISLIISADHAHTHDEDG--PYGYSEESEEYDKIIVDSLKSGNFEALLSIDDE----VIAEAKPDSYWSLL 227 (261)
T ss_pred HHHHHHhhcceEEEEecccccccCCCC--CCCCChhHHHHHHHHHHHhcccCHHHHHhccHH----HHHhcCCchHHHHH
Confidence 9973 67999999999999998865 899999999999999999999999999999654 34555579999999
Q ss_pred HHhcccCCC-CceeEe
Q 042295 228 VAMGAAGED-AKAEQI 242 (264)
Q Consensus 228 ~a~Ga~~~~-~~~~~~ 242 (264)
+++|..... .|.++.
T Consensus 228 i~lgiLe~~~~K~~~~ 243 (261)
T COG3885 228 ILLGILEESPRKMSLV 243 (261)
T ss_pred HHHHHHhcccccceEE
Confidence 999998642 344433
No 34
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=99.86 E-value=1.2e-20 Score=169.08 Aligned_cols=204 Identities=17% Similarity=0.139 Sum_probs=149.8
Q ss_pred EEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCCCC
Q 042295 3 TFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPG 82 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g 82 (264)
++..+|.+....- .-+..+++.+. ..+||+|||++||.......+.+.........++ +.+.
T Consensus 38 ~~i~PHagy~ysG---~~aa~ay~~l~----~~~p~~vvilgP~H~~~~~~~~~~~~~~~~TPlG-----------~v~v 99 (266)
T cd07361 38 AIIVPHAGYVYSG---PVAAHAYAALD----PGKPKRVVILGPSHTGYGRGCALSSAGAWETPLG-----------DVPV 99 (266)
T ss_pred EEEeCCCCccccH---HHHHHHHHHhc----cCCCCEEEEECCCCCCCCCceeeCCCCCeeCCCc-----------CCcc
Confidence 3566776643321 23345566654 5789999999996544434444433222111222 4577
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccC-CCCCeeeeeCCCCCChHHHHHHHHHhccc-ccCCeEE
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEKDGTYHYNVGKALAPL-KDEGVLI 160 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~~~~~~~~lG~aL~~~-~d~~v~i 160 (264)
|.+++++|.+.. +++ .........|||+.|||.|+..- .++|||||.++ ..++++++++|++|+++ .+++++|
T Consensus 100 d~~l~~~L~~~~---~~~-~~~~~~~~~EHs~EvqLpfLq~~~~~~~iVPi~vg-~~~~~~~~~~g~~l~~~~~~~~~~i 174 (266)
T cd07361 100 DRELVEELLKLG---GFI-VDDELAHEEEHSLEVQLPFLQYLLPDFKIVPILVG-DQSPEAAEALAEALSKYLLDPDTLI 174 (266)
T ss_pred CHHHHHHHHhcC---Ccc-ccCcchhhhhceeeeHHHHHHHHcCCCeEEEEEeC-CCCHHHHHHHHHHHHHHhcCCCeEE
Confidence 999999998664 553 32235677999999999997432 49999999997 67999999999999998 6889999
Q ss_pred EEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCC--Cc
Q 042295 161 IGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED--AK 238 (264)
Q Consensus 161 IaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~--~~ 238 (264)
|+||++||++.. +.+++||+.+++.|+++|.+.++++..+ ...+.|++.|+.++++++... .+
T Consensus 175 V~SsDlSH~~~~---------~~a~~~D~~~i~~i~~~d~~~~~~~~~~------~~~~~CG~~~i~~~l~~~~~~~~~~ 239 (266)
T cd07361 175 VISSDFSHYGPR---------ESAERLDRKAIEAILALDPEGFYEYLRE------TGNTACGRGPIAVLLEAAKELGALK 239 (266)
T ss_pred EEeCCCCCcCCH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHh------cCCceECHHHHHHHHHHHHhcCCCE
Confidence 999999998765 5689999999999999999999998543 125689999999999987643 36
Q ss_pred eeEecc
Q 042295 239 AEQIHQ 244 (264)
Q Consensus 239 ~~~~~~ 244 (264)
++++..
T Consensus 240 ~~ll~Y 245 (266)
T cd07361 240 AELLDY 245 (266)
T ss_pred EEEeee
Confidence 676653
No 35
>PRK00782 hypothetical protein; Provisional
Probab=99.78 E-value=2.5e-17 Score=147.93 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=135.4
Q ss_pred CCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeE
Q 042295 36 KPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAW 115 (264)
Q Consensus 36 ~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~ 115 (264)
+||+|||++||.......+++.... + .-|= -+.+.|.+++++|...+ + ...+.....||+.-
T Consensus 63 ~p~~vvilGp~H~~~~~~~av~~~~--~----~TPl------G~v~vD~~l~~~L~~~~----~--~~~~~ah~~EHSiE 124 (267)
T PRK00782 63 EAETFVIIGPNHTGLGSPVAVSPEG--W----KTPL------GDVEVDEELAKALASGI----I--DLDELAHKYEHSIE 124 (267)
T ss_pred CCCEEEEECCCCCCCCCCeEEecCc--c----cCCC------cCCcCCHHHHHHHHHhh----h--ccchhhhhhhceEE
Confidence 4999999998544555556554322 1 1121 14677999999997222 1 11122356799999
Q ss_pred eecccccc--CCCCCeeeeeCCCCCChHHHHHHHHHhccc-c--cCCeEEEEecCCcccccccccCCCCCcchHHHHHHH
Q 042295 116 TPLMLMYP--EANIPVCQLSLQPEKDGTYHYNVGKALAPL-K--DEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCW 190 (264)
Q Consensus 116 vPL~~l~p--~~diPVV~is~~~~~~~~~~~~lG~aL~~~-~--d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~ 190 (264)
|+|-|+.. ..++|||||.++ ..++++++++|++|+++ + +++++||+||++||+... +.+++||+.
T Consensus 125 vqlPFLq~~~~~~~~iVPI~vg-~~~~~~~~~lg~~L~~~~~~~~~~vliIaSsDlSH~~~~---------~~a~~~D~~ 194 (267)
T PRK00782 125 VQLPFLQYLFGKDFKIVPICLG-MQDEETAREVGEAIAEAIEELGKKVVVIASSDFTHYEPA---------ERAKEKDMI 194 (267)
T ss_pred ecHHHhhHhhcCCCeEEEEEcC-CCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCH---------HHHHHHHHH
Confidence 99955532 358999999998 78999999999999986 3 679999999999997642 567999999
Q ss_pred HHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCC--CceeEeccc-------eeccceeeeEEEec
Q 042295 191 LKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED--AKAEQIHQS-------WQLCSLSCSSYKFT 259 (264)
Q Consensus 191 ~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~--~~~~~~~~~-------~~~~~~s~~~~~~~ 259 (264)
+++.|+++|.+.|.+... ..+.+.|++.|+.++++++..- .+++++... -.--+.++.++.|.
T Consensus 195 ~i~~I~~~d~~~l~~~~~------~~~~~~CG~~pi~~~l~~~~~~g~~~~~ll~Y~~S~d~~~~~~~vVgYa~~~~~ 266 (267)
T PRK00782 195 LIEAILDLDVDGFYDEIY------RMNATACGYGPIAAMMTYSKKLGASKAELLHYATSGDVSGDTSAVVGYAAIVFR 266 (267)
T ss_pred HHHHHHcCCHHHHHHHHH------hcCCceECHHHHHHHHHHHHhcCCCeEEEeeecCccCCCCCCCccEEeeEEEEE
Confidence 999999999999987632 2334689999999999887532 256666521 11225566666653
No 36
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=98.95 E-value=2.5e-08 Score=88.80 Aligned_cols=177 Identities=17% Similarity=0.223 Sum_probs=124.8
Q ss_pred CCCCEEEEEcC-CCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcce
Q 042295 35 QKPNSILVISA-HWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHG 113 (264)
Q Consensus 35 ~~Pd~IVviS~-Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG 113 (264)
.+||+|||++| |.- .+..+.+.... ++--.| -++..|.|+++.|.+. .++. ..........|+
T Consensus 73 ~~~~~vVIlGPnHtg-~g~~vsv~~~g-------~w~TPL----G~v~vD~e~~~~l~~~---~~~~-~~D~~ah~~EHS 136 (279)
T COG1355 73 GEPDTVVILGPNHTG-LGSPVSVSPEG-------EWETPL----GDVKVDSELAEELVKH---SGII-DLDELAHLYEHS 136 (279)
T ss_pred CCCCEEEEECCCCCC-CCCceEEecCC-------ccccCC----CCeeeCHHHHHHHHHh---cCCC-Cchhhhhhhhce
Confidence 78999999988 643 33334443211 111111 1345699999998877 2442 111223445787
Q ss_pred eEee---ccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccc-cC-CeEEEEecCCcccccccccCCCCCcchHHHHH
Q 042295 114 AWTP---LMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLK-DE-GVLIIGSGSATHNLKALQFDGDSVVSWASEFD 188 (264)
Q Consensus 114 ~~vP---L~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~-d~-~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD 188 (264)
.=|= |.++|++ ++.||||.+. ..+.+...++|++|.++. +. +++||+|=+.+|... ....+++|
T Consensus 137 iEvQlPFLqy~f~~-~fKIVPi~m~-~q~~~~a~~ig~~i~k~i~e~~~~liIaSSDf~HYep---------~~~~~~~D 205 (279)
T COG1355 137 IEVQLPFLQYLFGD-EFKIVPICMG-MQDKEVARDIGRAIAKVIKELGDALIIASSDFTHYEP---------QDIVRRKD 205 (279)
T ss_pred EEeehHHHHHHccC-CcEEEeEEEe-cccHHHHHHHHHHHHHHHhhcCCeEEEEecCccccCc---------hhhhhhhH
Confidence 6654 4556766 8999999997 789999999999999984 44 599999999999843 25568999
Q ss_pred HHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccC--CCCceeEecc
Q 042295 189 CWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAG--EDAKAEQIHQ 244 (264)
Q Consensus 189 ~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~--~~~~~~~~~~ 244 (264)
+.++++|++.|.+.+..+.+ ..+.|.|++-|+.+.+=++. +..+.++++.
T Consensus 206 ~~~I~~I~~~d~~g~~~~~~------~~n~t~CG~gpi~~~l~~~k~~g~~~~~ll~y 257 (279)
T COG1355 206 RILIKAILALDLDGFYELLE------RTNATMCGYGPIAVLLEASKKLGAKEAKLLDY 257 (279)
T ss_pred HHHHHHHHhcCHHHHHHHHH------hcCCccccccHHHHHHHHHHHcCcccceeecc
Confidence 99999999999999998843 45667899999888876542 2235666653
No 37
>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life. The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.
Probab=98.79 E-value=8.6e-09 Score=93.11 Aligned_cols=186 Identities=20% Similarity=0.239 Sum_probs=104.8
Q ss_pred cCCCCEEEEEcC-CCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcc
Q 042295 34 LQKPNSILVISA-HWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDH 112 (264)
Q Consensus 34 ~~~Pd~IVviS~-Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDH 112 (264)
..+||.|||++| |..... .+.+... .. +..| + -+.+.|.+++++|.+.... + ...+.....+|
T Consensus 59 ~~~~~~vvilGpsH~~~~~-~~~~~~~-~~----~~TP--l----G~v~vD~e~~~~L~~~~~~--~--~~~~~~h~~EH 122 (276)
T PF01875_consen 59 ESKPKRVVILGPSHTGYGD-GIAVSPF-DS----WETP--L----GEVPVDSELAEELAKNFPF--F--EFDDEAHEEEH 122 (276)
T ss_dssp TTT--EEEEEEE-SSS--S-SEEE-SS-SE----E--S--S------EEB-HHHHHHHHHTT-E-----EE--HHHHH--
T ss_pred hcCCCEEEEECCCccCCCC-CeEeccC-Ce----EECC--C----cccccCHHHHHHHHhcCCC--c--ccchhhccccC
Confidence 357888888876 764432 2333221 10 1112 1 1345688888888775321 1 11111124466
Q ss_pred eeEee---ccccccC-CCCCeeeeeCCCCCChHHHHHHHHHhccc-ccCCeEEEEecCCcccccccccCCCCCcchHHH-
Q 042295 113 GAWTP---LMLMYPE-ANIPVCQLSLQPEKDGTYHYNVGKALAPL-KDEGVLIIGSGSATHNLKALQFDGDSVVSWASE- 186 (264)
Q Consensus 113 G~~vP---L~~l~p~-~diPVV~is~~~~~~~~~~~~lG~aL~~~-~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~- 186 (264)
..=+- |++++|+ .+++||||.+. ..+.+.+.++|++|.++ ++++++||+|-++||.....+..+ ...+.+++
T Consensus 123 SlEvqlPFLq~~~~~~~~~~IVPI~vg-~~~~~~~~~~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~~-~~~~~~~~~ 200 (276)
T PF01875_consen 123 SLEVQLPFLQYLFPDRRDFKIVPILVG-DQSPETAKELAEALAEYLKDEGTLIVASSDFSHYGPRFGDAP-KPEEIAEKI 200 (276)
T ss_dssp TTGGGHHHHHHHTGGGTS-EEEEEEE--S--HHHHHHHHHHHHHHHTSTTEEEEEE----EEBGGGT--G-GGSSHHHHH
T ss_pred cEEEHHHHHHHHhccCCceEEEEEEec-CCCHHHHHHHHHHHHHHHcCCCEEEEEeCccccccccccCCC-CCHHHHHHH
Confidence 66555 4556787 68999999997 67888899999999997 577899999999999886544211 12234444
Q ss_pred --HHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC--CCceeEec
Q 042295 187 --FDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE--DAKAEQIH 243 (264)
Q Consensus 187 --FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~--~~~~~~~~ 243 (264)
.|+..++.|+++|.+.+.+.-+ ..+.+-|++-|+.+++-++.. ..++++++
T Consensus 201 ~~~D~~~i~~i~~~d~~~~~~~~~------~~~~t~CG~~pi~~~l~~~~~~~~~~~~ll~ 255 (276)
T PF01875_consen 201 EALDREAIEAIEALDPEGFYEYLK------ETNNTACGRGPIAVLLEAAKALGAWKGELLD 255 (276)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH------HH----TTHHHHHHHHHHHHHHHCEEEEEEE
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH------HcCCceechHHHHHHHHHHHHcCCCeEEEee
Confidence 4999999999999999988632 334558999999998876542 13566654
No 38
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=95.72 E-value=0.056 Score=47.80 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=80.6
Q ss_pred CCCeeeeeCCCCCChHHHHHHHHHhccc-ccCCeEEEEecCCcccccccccCCCC-----CcchHHHHHHHHHHHHHcCC
Q 042295 126 NIPVCQLSLQPEKDGTYHYNVGKALAPL-KDEGVLIIGSGSATHNLKALQFDGDS-----VVSWASEFDCWLKDALLQGR 199 (264)
Q Consensus 126 diPVV~is~~~~~~~~~~~~lG~aL~~~-~d~~v~iIaSG~lsH~l~~~~~~~~~-----~~~~~~~FD~~~~~~l~~gd 199 (264)
.+.||||-+. .+++..--..|+.|++. .|.+=+++-|-+.-||=+..+...+. -..--+..|+.=++.|+..|
T Consensus 148 ~~kivPilvg-~ls~~~e~~~g~lls~Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I~~sIe~lDk~gM~iiet~~ 226 (296)
T KOG3086|consen 148 TVKIVPILVG-ALSPSVEQCYGKLLSKYIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPIYESIENLDKQGMKIIETLD 226 (296)
T ss_pred eEEEEeeEec-ccChHHHHHHHHHHHHHhcCccceEEEeccccccccccccccccCCCchHHHHHHHHHHhhhhhhhcCC
Confidence 4789999998 78898899999999997 57777888899999998766532111 12334779999999999999
Q ss_pred HHHHhcchhhCCcchhcCCCCcchHHHHHHhccc
Q 042295 200 YEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAA 233 (264)
Q Consensus 200 ~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~ 233 (264)
.++.-+|-+ .-+.|-|+--|+-++|+|+
T Consensus 227 pdaf~~YLk------~~~NTICGr~PI~v~l~a~ 254 (296)
T KOG3086|consen 227 PDAFSEYLK------KTQNTICGRHPISVILSAL 254 (296)
T ss_pred hHHHHHHHH------HhCCccccCccHHHHHHHH
Confidence 999888843 4567789999999999865
No 39
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=83.42 E-value=19 Score=32.38 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCCCC-CCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHH-hCCCCcccccCCCCCcc
Q 042295 35 QKPNSILVISAHWE-TDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLR-TSGFNHVKEDTKRGLDH 112 (264)
Q Consensus 35 ~~Pd~IVviS~Hw~-~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~-~~gid~~~~~~~~~lDH 112 (264)
.+-...|+|+.|-. ...+.... ...|+......+....+++|++.+.+.++ +.|+ .+..+..+ .
T Consensus 136 ~~~g~~~liD~HSm~s~~p~~~~----------g~~pd~~lG~~~G~s~~~~l~~~l~~~l~~~~g~-~v~~N~Py---~ 201 (263)
T TIGR02017 136 AQHGYAVLYDAHSIRSVIPRLFE----------GKLPDFNIGTNDGASCDPALTDAVEAVCAKATGY-SHVLNGRF---K 201 (263)
T ss_pred HhCCCEEEEEeccCCccCCCcCC----------CCCCCEEEeCCCCCCCCHHHHHHHHHHHHhcCCc-eEEeCCCC---C
Confidence 45567788999933 22111110 11234333344455569999999999996 6788 46544333 6
Q ss_pred eeEeeccccccCCCCCeeeeeCCCC--CC---------hHHHHHHHHHhccc
Q 042295 113 GAWTPLMLMYPEANIPVCQLSLQPE--KD---------GTYHYNVGKALAPL 153 (264)
Q Consensus 113 G~~vPL~~l~p~~diPVV~is~~~~--~~---------~~~~~~lG~aL~~~ 153 (264)
|.++.-+|=.|+..+..|||-+|.. ++ .++.-+|.+.|+.+
T Consensus 202 Gg~itr~yg~p~~~vhaiQiEi~r~lYm~e~~~~~~~~~~~~~~l~~~l~~~ 253 (263)
T TIGR02017 202 GGWITRHYGQPQNGVHAVQMELAQRGYMAEEAEPFAYRPDRAAPLRAVLKQL 253 (263)
T ss_pred CcceecccCCCCCCCceEeeeEchhhhcCCCCCCCCcCHhHHHHHHHHHHHH
Confidence 7888888888999999999999853 22 22555555555554
No 40
>PRK03995 hypothetical protein; Provisional
Probab=82.83 E-value=18 Score=32.63 Aligned_cols=114 Identities=22% Similarity=0.324 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCC-CCCCeEEEec--CCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCC----CCcccccCCC
Q 042295 36 KPNSILVISAHWE-TDVPTVNVVR--QNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSG----FNHVKEDTKR 108 (264)
Q Consensus 36 ~Pd~IVviS~Hw~-~~~~~i~~~~--~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~g----id~~~~~~~~ 108 (264)
++|.||++|=|-- +..+.+|+.. ++ .--+|+|-|.++ ++.+|.+...+.+.+++.. ++ +....
T Consensus 63 ~~d~iIflSRH~s~~~~p~LTvH~tGN~-~~a~~GG~p~~l------a~a~P~~~~~lL~~l~~~~~~~~ye-vt~Ea-- 132 (267)
T PRK03995 63 KGEYIIFLSRHSSKAKKPSLTVHTPGNP-GEASYGGKPKEL------AIANPRLMTSLLRNLKKLAKELGFE-VTFEA-- 132 (267)
T ss_pred CCCEEEEEecccCCCCCceEEEECCCCC-chhhcCCCCCcc------ccCCHHHHHHHHHHHHHhcCCCCcE-EEEEc--
Confidence 8899999999964 5567777754 22 333688888764 5678998888888775433 32 32211
Q ss_pred CCcceeEeecccccc-CCCCCeeeeeCCCCC----ChHHHHHHHHHhcccc-----cCCeEEEEecCCcccc
Q 042295 109 GLDHGAWTPLMLMYP-EANIPVCQLSLQPEK----DGTYHYNVGKALAPLK-----DEGVLIIGSGSATHNL 170 (264)
Q Consensus 109 ~lDHG~~vPL~~l~p-~~diPVV~is~~~~~----~~~~~~~lG~aL~~~~-----d~~v~iIaSG~lsH~l 170 (264)
-=|| | +.+.|.+=|=|.... +++.+-.+.+++-++. ++...+||-||. |--
T Consensus 133 -THHG---------Pt~l~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~l~~~~~~~~~~~iGiGGg-HYa 193 (267)
T PRK03995 133 -THHG---------PTELKVPSVFVEIGSTEEEWKNERAGEILAEAVIEVLDSIEYEKFKPAIGIGGG-HYA 193 (267)
T ss_pred -cccC---------CCCCCCCeEEEEeCCCHHHhCCcHHHHHHHHHHHHHHhcccccCCCEEEEECCC-Ccc
Confidence 1233 4 378898888887542 5666677777766652 345678899987 643
No 41
>PRK05723 flavodoxin; Provisional
Probab=81.08 E-value=6.8 Score=32.07 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCC-CCChHHHHHHHHHhc-----ccccC
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP-EKDGTYHYNVGKALA-----PLKDE 156 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~-~~~~~~~~~lG~aL~-----~~~d~ 156 (264)
..++|++|.+.+.+.|++ +.......++ .+.- + +.+.=|+-+|.-. .-.|.....|=+.|. .+.+.
T Consensus 14 ae~~A~~la~~l~~~g~~-~~~~~~~~~~-----~~~~-~-~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~~~l~~~ 85 (151)
T PRK05723 14 AEEVARHAESLLKAAGFE-AWHNPRASLQ-----DLQA-F-APEALLAVTSTTGMGELPDNLMPLYSAIRDQLPAAWRGL 85 (151)
T ss_pred HHHHHHHHHHHHHHCCCc-eeecCcCCHh-----HHHh-C-CCCeEEEEECCCCCCCCchhHHHHHHHHHhcCccCCCCC
Confidence 456889999999888884 4321111110 0000 0 1121133333321 123555555555555 35678
Q ss_pred CeEEEEecCCcc
Q 042295 157 GVLIIGSGSATH 168 (264)
Q Consensus 157 ~v~iIaSG~lsH 168 (264)
+++|+|.|+.++
T Consensus 86 ~~aVfGLGDs~Y 97 (151)
T PRK05723 86 PGAVIALGDSSY 97 (151)
T ss_pred EEEEEeEeCCcc
Confidence 999999999976
No 42
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=79.90 E-value=12 Score=32.74 Aligned_cols=116 Identities=24% Similarity=0.444 Sum_probs=62.3
Q ss_pred cCCCCEEEEEcCCCCCC-CCeEEEec--CCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHh---CCCCcccccCC
Q 042295 34 LQKPNSILVISAHWETD-VPTVNVVR--QNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRT---SGFNHVKEDTK 107 (264)
Q Consensus 34 ~~~Pd~IVviS~Hw~~~-~~~i~~~~--~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~---~gid~~~~~~~ 107 (264)
..++|.||++|=|--.+ .+.+|+.. ++.. -+|+|-|.++ ++.+|.+...+.+.+.+ .|++ +.....
T Consensus 10 ~~~~d~iIf~SrH~s~~~~p~LTvH~tGN~~~-a~~GG~p~~l------a~a~P~~~~~~l~~l~~~~~e~y~-v~~EaT 81 (213)
T PF04414_consen 10 FEDPDLIIFLSRHSSESGRPSLTVHTTGNFGE-AEYGGKPGEL------APANPRLMKALLRALKKHAPEGYE-VSYEAT 81 (213)
T ss_dssp TS--SEEEEEEEEE-TT---EEEEE--EESS---TTSS-TTEE-------BB-HHHHHHHHHHHHHHGGCT-E-EEE--S
T ss_pred cCCCCEEEEEeeccCCCCCceEEEeCCCCCCc-cccCCCCCcc------ccCCHHHHHHHHHHHHHhccCCCE-EEEEee
Confidence 56899999999995443 46676653 3333 6788988765 45688888888877752 2553 443211
Q ss_pred CCCcceeEeeccccccC-CCCCeeeeeCCCCC----ChHHHHHHHHHhcccc----cCC--eEEEEecCCcccc
Q 042295 108 RGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEK----DGTYHYNVGKALAPLK----DEG--VLIIGSGSATHNL 170 (264)
Q Consensus 108 ~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~----~~~~~~~lG~aL~~~~----d~~--v~iIaSG~lsH~l 170 (264)
=|| |. .++|.+=|=|.... +++-+-.+.+++-++. +.. ..+||-||. |--
T Consensus 82 ---HHG---------Pt~~~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~GG~-HYa 142 (213)
T PF04414_consen 82 ---HHG---------PTDLSVPSVFVEIGSTEEEWNDPDAAEAVARAVLEVLESDEKAECCPVAIGFGGG-HYA 142 (213)
T ss_dssp ----SS--------------SBEEEEEEEESHHHHT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE-S--TT-
T ss_pred ---ccC---------CCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhcccccccccceeEEecCc-ccc
Confidence 244 33 57887777776442 5666666777766662 122 889999997 643
No 43
>PRK09004 FMN-binding protein MioC; Provisional
Probab=76.58 E-value=15 Score=29.72 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCC-CCCChHHHHHHHHHhcc----cccCC
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQ-PEKDGTYHYNVGKALAP----LKDEG 157 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~-~~~~~~~~~~lG~aL~~----~~d~~ 157 (264)
..++|++|.+.+++.|++ +.... .+. +- -+++.+.=|+-+|.- ..-.|..+..|=+.|.+ +.+.+
T Consensus 15 ae~~A~~l~~~~~~~g~~-~~~~~---~~~----~~--~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~ 84 (146)
T PRK09004 15 AEYVADHLAEKLEEAGFS-TETLH---GPL----LD--DLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVR 84 (146)
T ss_pred HHHHHHHHHHHHHHcCCc-eEEec---cCC----HH--HhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCE
Confidence 456889999999988884 43211 010 10 112233222222221 12345666677666654 45679
Q ss_pred eEEEEecCCcccccccccCCCCCcchHHHHHHHHHH
Q 042295 158 VLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKD 193 (264)
Q Consensus 158 v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~ 193 (264)
++|+|.|+.+.. . +..+++.+|+++.+
T Consensus 85 ~aVfGlGds~Y~----~-----fc~~~~~ld~~l~~ 111 (146)
T PRK09004 85 FAAIGIGSSEYD----T-----FCGAIDKLEQLLKA 111 (146)
T ss_pred EEEEeecCCCHH----H-----HhHHHHHHHHHHHH
Confidence 999999998741 1 23455666666654
No 44
>PRK09271 flavodoxin; Provisional
Probab=76.10 E-value=9.8 Score=31.16 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCC---CCChHHHHHHHHHhccc--ccCCe
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP---EKDGTYHYNVGKALAPL--KDEGV 158 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~---~~~~~~~~~lG~aL~~~--~d~~v 158 (264)
..+|+.|.+.+++.|++ +... .....+ ..+. ...-.+.-+|-+..++ ..-|.....|=+.|... ..+++
T Consensus 15 e~~A~~ia~~l~~~g~~-v~~~-~~~~~~--~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~ 88 (160)
T PRK09271 15 REVAREIEERCEEAGHE-VDWV-ETDVQT--LAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNV 88 (160)
T ss_pred HHHHHHHHHHHHhCCCe-eEEE-eccccc--cccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeE
Confidence 56799999999998984 4321 111111 0011 0001234555555543 23455666666666653 45679
Q ss_pred EEEEecCCcc
Q 042295 159 LIIGSGSATH 168 (264)
Q Consensus 159 ~iIaSG~lsH 168 (264)
+|+|||+.+.
T Consensus 89 avfgsgd~~~ 98 (160)
T PRK09271 89 AVFGTGETQW 98 (160)
T ss_pred EEEecCCCCc
Confidence 9999997654
No 45
>PRK14866 hypothetical protein; Provisional
Probab=75.04 E-value=33 Score=33.39 Aligned_cols=116 Identities=25% Similarity=0.383 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCC-CCCCeEEEecC-CCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhC---CCCcccccCCCCC
Q 042295 36 KPNSILVISAHWE-TDVPTVNVVRQ-NDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTS---GFNHVKEDTKRGL 110 (264)
Q Consensus 36 ~Pd~IVviS~Hw~-~~~~~i~~~~~-~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~---gid~~~~~~~~~l 110 (264)
+||.||++|=|-- +..+.+|+... +...-+|+|-|.++ ++.+|.+...+.+.+++. |++ +.....
T Consensus 69 ~~d~iIf~SRH~s~~~~p~LTvH~tGN~~~a~~GG~p~~l------a~a~P~~~~~lL~~l~~~~~~~ye-vt~EaT--- 138 (451)
T PRK14866 69 DPDLLIFASRHSSVDTGPLLTAHFTGNFGPAEYGGEPGSL------APAAPNAMKAVLEALAEHAPEGYD-VSMECT--- 138 (451)
T ss_pred CCCEEEEEecccCCCCCceEEEECCCCCChhhcCCCCCcc------ccCCHHHHHHHHHHHHHhCcCCcE-EEEEcc---
Confidence 8999999999965 55677777542 22334578888754 566888888888766432 443 332111
Q ss_pred cceeEeeccccccCCCCCeeeeeCCCCC----ChHHHHHHHHHhcccc----cCCeEEEEecCCcccc
Q 042295 111 DHGAWTPLMLMYPEANIPVCQLSLQPEK----DGTYHYNVGKALAPLK----DEGVLIIGSGSATHNL 170 (264)
Q Consensus 111 DHG~~vPL~~l~p~~diPVV~is~~~~~----~~~~~~~lG~aL~~~~----d~~v~iIaSG~lsH~l 170 (264)
-||-+ +.++|.+=|=|.... +++.+-.+.+++-++. ++...+||-||. |--
T Consensus 139 HHGPt--------~l~~Ps~FvEIGSte~eW~d~~a~~~vA~ail~~~~~~~~~~~~~iG~GGg-HYa 197 (451)
T PRK14866 139 HHGPT--------DVGVPSLFVELGSTEKEWDDPDAARAVARAILDLRGVPPHTDRPLVGFGGG-HYA 197 (451)
T ss_pred ccCCC--------CCCCceEEEEeCCCHHHhCCcHHHHHHHHHHHHHhcccccCCCEEEEeCCC-Ccc
Confidence 23321 258888888887542 5666666677666653 234677899987 643
No 46
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=68.88 E-value=19 Score=33.28 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEE--cCCCCCC-----CCeEEEecCCCccCCCCCCc-------------------ccc
Q 042295 20 QVRHFLKAWKEQVFLQKPNSILVI--SAHWETD-----VPTVNVVRQNDTIYDFYGFP-------------------EQL 73 (264)
Q Consensus 20 ~~~~~l~~l~~~l~~~~Pd~IVvi--S~Hw~~~-----~~~i~~~~~~~~~~D~~gfP-------------------~~~ 73 (264)
.+.+++++|++.+++..|+.+||. ....... ...|..-....+.++.++-. ...
T Consensus 188 ~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~~g~~~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~V 267 (315)
T TIGR01370 188 EMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDDHGGLAATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFV 267 (315)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEecCchhhhhccccchhhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcE
Confidence 456778888777787889998876 2233321 12222222233444433221 114
Q ss_pred ccccCCCCC-----CHHHHHHHHHHHHhCCCCcccccCCCCC
Q 042295 74 YKLKYPAPG-----APDLAKRVKELLRTSGFNHVKEDTKRGL 110 (264)
Q Consensus 74 y~~~y~~~g-----~~elA~~i~~~l~~~gid~~~~~~~~~l 110 (264)
+-+.|-.+| +.++++.+.+.+++.||-|-..+..+.|
T Consensus 268 l~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf~pYVsd~~l~l 309 (315)
T TIGR01370 268 LTVDYVDDGTKTNENPARMKDAAEKARAAGLIPYVAESDLEL 309 (315)
T ss_pred EEEEecCCcccchhhHHHHHHHHHHHHHcCCeeeecCchhcc
Confidence 567787777 5688899999999999843222334444
No 47
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=67.26 E-value=39 Score=29.30 Aligned_cols=79 Identities=15% Similarity=0.058 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCCCCCCe---EEEecCCCccCCCCCC-ccccccccCCCCCCHHH-----HHHHHHH
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWETDVPT---VNVVRQNDTIYDFYGF-PEQLYKLKYPAPGAPDL-----AKRVKEL 93 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~---i~~~~~~~~~~D~~gf-P~~~y~~~y~~~g~~el-----A~~i~~~ 93 (264)
...+.+.+.+.+.+||+||.+.=+--..... +.++.....+-|-.|. |.. ..-...|...+ .++|++.
T Consensus 47 ~~~~~l~~~~~~~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~---~~I~~~gp~~~~t~lp~~~l~~~ 123 (209)
T PRK13193 47 KIEDLIVTKIREMKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKG---EKIDPLGQDGIFTNIPVEDLVDL 123 (209)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCC---CcccCCCcceeecCCCHHHHHHH
Confidence 3344455555667999999997664333322 3333333334454443 221 11111222222 5888899
Q ss_pred HHhCCCCccccc
Q 042295 94 LRTSGFNHVKED 105 (264)
Q Consensus 94 l~~~gid~~~~~ 105 (264)
++++|+ ++..+
T Consensus 124 l~~~Gi-p~~~S 134 (209)
T PRK13193 124 LNENGI-PAELS 134 (209)
T ss_pred HHhcCC-CceEe
Confidence 999999 56544
No 48
>PRK08105 flavodoxin; Provisional
Probab=66.03 E-value=34 Score=27.76 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC---CChHHHHHHHHHhcc----ccc
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE---KDGTYHYNVGKALAP----LKD 155 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~---~~~~~~~~lG~aL~~----~~d 155 (264)
..++|++|.+.+++.|++ +.... ++. .-+ + ...+..+|.+.+.+. -.|....++=+.|++ +.+
T Consensus 15 te~~A~~l~~~l~~~g~~-~~~~~---~~~--~~~---~-~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~ 84 (149)
T PRK08105 15 ALLVAEEAEAILTAQGHE-VTLFE---DPE--LSD---W-QPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPN 84 (149)
T ss_pred HHHHHHHHHHHHHhCCCc-eEEec---hhh--CCc---h-hcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCC
Confidence 456899999999988985 43211 111 011 1 111123333333222 245555555555554 356
Q ss_pred CCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHH
Q 042295 156 EGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKD 193 (264)
Q Consensus 156 ~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~ 193 (264)
.+++|+|.|+.++.- +..++..+|+++.+
T Consensus 85 ~~~avfGlGds~Y~~---------fc~~~~~ld~~l~~ 113 (149)
T PRK08105 85 LRYGVIALGDSSYDN---------FCGAGKQFDALLQE 113 (149)
T ss_pred CEEEEEeeecCCHHH---------HHHHHHHHHHHHHH
Confidence 789999999987511 22455666666654
No 49
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=64.72 E-value=30 Score=34.63 Aligned_cols=111 Identities=21% Similarity=0.284 Sum_probs=61.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecC-CCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCccc
Q 042295 25 LKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQ-NDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVK 103 (264)
Q Consensus 25 l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~-~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~ 103 (264)
.++.++++++.++|++|+++++|.-...++..... |.+++ ||++ -+.||.-.|+..+ ..+++.|+ +.
T Consensus 66 A~~~aekFk~e~Vd~~I~vt~cw~fG~Et~d~~~~~PvllW---g~~d------perPGav~L~A~l-aa~~Q~Gi-p~- 133 (588)
T PRK10991 66 AAACEEKFSSENVGLTITVTPCWCYGSETIDMDPTRPKAIW---GFNG------TERPGAVYLAAAL-AAHSQKGI-PA- 133 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCcccchhHHHhcCCCCCEEEe---CCCC------CCCCcHHHHHHHH-HHHHhcCC-Ce-
Confidence 34555666667899999999999754433322222 44443 4433 1236776676333 33345555 32
Q ss_pred ccCCCCCcceeEeecccccc----CCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEEEec
Q 042295 104 EDTKRGLDHGAWTPLMLMYP----EANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSG 164 (264)
Q Consensus 104 ~~~~~~lDHG~~vPL~~l~p----~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iIaSG 164 (264)
.+++. +.+=+-+|=.+ .-...+..+-+.+++.+|.++++.||+=
T Consensus 134 ---------------~~IyGh~vqd~dd~~i~~dv--~ekLl~FaRAa~aV~~LRg~syl~IG~r 181 (588)
T PRK10991 134 ---------------FSIYGHDVQDADDTSIPADV--EEKLLRFARAGLAVASMKGKSYLSIGGV 181 (588)
T ss_pred ---------------EEEeCCCccccccccchHHH--HHHHHHHHHHHHHHHHhcCCeEEEECCc
Confidence 12221 11111000000 1134577888888889999999999974
No 50
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=64.54 E-value=8.7 Score=33.33 Aligned_cols=51 Identities=18% Similarity=0.382 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHH-hCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCC
Q 042295 82 GAPDLAKRVKELLR-TSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP 136 (264)
Q Consensus 82 g~~elA~~i~~~l~-~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~ 136 (264)
.++++++.+.+.++ +.|+. +..+..+ .|..++-++-.|+..++.|||-++.
T Consensus 166 ~~~~l~~~~~~~l~~~~g~~-v~~N~Py---~Gg~~~~~~~~~~~~v~~iqiEi~~ 217 (222)
T PF05013_consen 166 CDPELVDALAEALEASDGYS-VRVNEPY---SGGYITRYYGRPARGVHAIQIEINR 217 (222)
T ss_dssp S-HHHHHHHHHHCC-CTTS--EEETSS-----GGHCCCHHHCCCCTEEEEEEEEEG
T ss_pred CCHHHHHHHHHHhhcccCcE-EeeCCCC---CCcchhcEEecCCCCceEEEEEEEH
Confidence 38899999999999 77884 7665444 3444556677788999999998874
No 51
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=64.09 E-value=35 Score=34.09 Aligned_cols=113 Identities=21% Similarity=0.275 Sum_probs=61.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecC-CCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCccc
Q 042295 25 LKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQ-NDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVK 103 (264)
Q Consensus 25 l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~-~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~ 103 (264)
.++.++++++..+|++|+++|+|.....++..... |..++ ||++ . +.||.--|+..+..+. +.|+ +..
T Consensus 65 A~a~a~kfk~~~Vd~tItvtpcWcygseT~dm~p~~P~alW---gfn~----p--erpGaVyLaA~lAaha-Q~Gl-p~f 133 (587)
T TIGR01089 65 AAACAEKFSRENVGLTITVTPCWCYGSETIDMDPHRPKAIW---GFNG----T--ERPGAVYLAAALAGHS-QKGL-PAF 133 (587)
T ss_pred HHHHHHHHhhcCCCEEEEecceecCcHhhhhcCCCCCEEEE---cCCC----C--CCCchHHHHHhhhHHh-hCCC-Cee
Confidence 33455666667899999999999876544433332 44444 4433 1 2378888877766554 4566 321
Q ss_pred ccCCCCCcceeEeeccccccCCCCCeeeeeCCC--CCChHHHHHHHHHhcccccCCeEEEEec
Q 042295 104 EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP--EKDGTYHYNVGKALAPLKDEGVLIIGSG 164 (264)
Q Consensus 104 ~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~--~~~~~~~~~lG~aL~~~~d~~v~iIaSG 164 (264)
. -+|-| + -+.+=+ +|+. .-...+..+-+.+++.++.++++.|||=
T Consensus 134 ~--IyG~~--v--------qd~~d~----~ip~dV~eKll~faRAa~AV~~Lkgksyl~IG~~ 180 (587)
T TIGR01089 134 S--IYGHD--V--------QDADDT----SIPEDVEEKLLRFARAGLAVASMRGKSYLSLGSV 180 (587)
T ss_pred E--EeCCC--c--------cccccc----cCcHHHHHHHHHHHHHHHHHHHhccCeEEEECCc
Confidence 1 01100 0 011100 1110 0112355566666777899999999873
No 52
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=54.87 E-value=1.1e+02 Score=26.52 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEc-CCCCC----CCCeEEEecCCCccCCCCCCccccccccCCCCCCHHH-----HHHH
Q 042295 21 VRHFLKAWKEQVFLQKPNSILVIS-AHWET----DVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDL-----AKRV 90 (264)
Q Consensus 21 ~~~~l~~l~~~l~~~~Pd~IVviS-~Hw~~----~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~el-----A~~i 90 (264)
..++.+.|-+.+.+.+||+++.+. +=.-+ ...+|++.+ --+-|-.|.-. -+..-...|.... .+++
T Consensus 45 f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~~iT~ERVAINv~D--arIpDN~G~qp--iDepI~~dGpaAYfstlPvkam 120 (207)
T COG2039 45 FKKSIDALVQAIAEVQPDLVLAIGQAGGRTKITPERVAINVDD--ARIPDNAGNQP--IDEPIDPDGPAAYFSTLPVKAM 120 (207)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEecccCCCCcCChhheeecccc--ccCCCCCCCCc--CCCccCCCCchhhhhcCcHHHH
Confidence 345666777778889999999994 21111 123444443 23666666411 1122233344332 4889
Q ss_pred HHHHHhCCCCcccccCCC
Q 042295 91 KELLRTSGFNHVKEDTKR 108 (264)
Q Consensus 91 ~~~l~~~gid~~~~~~~~ 108 (264)
++.++++|+ |...+.+-
T Consensus 121 v~~~~~~Gi-PA~vS~sA 137 (207)
T COG2039 121 VQAIREAGI-PASVSNSA 137 (207)
T ss_pred HHHHHHcCC-Chhhhccc
Confidence 999999999 67655443
No 53
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=53.56 E-value=14 Score=30.82 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHH-HhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccc--cCCe
Q 042295 82 GAPDLAKRVKELL-RTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLK--DEGV 158 (264)
Q Consensus 82 g~~elA~~i~~~l-~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~--d~~v 158 (264)
+.-+=+-.+++.+ .+.|.| +-. .||- .-.++....++|||.|-+. .+++-++|.+++ .++|
T Consensus 17 ~~~e~~v~~a~~~~~~~g~d-ViI--sRG~------ta~~lr~~~~iPVV~I~~s-------~~Dil~al~~a~~~~~~I 80 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGAD-VII--SRGG------TAELLRKHVSIPVVEIPIS-------GFDILRALAKAKKYGPKI 80 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-S-EEE--EEHH------HHHHHHCC-SS-EEEE----------HHHHHHHHHHCCCCTSEE
T ss_pred ecHHHHHHHHHHhhHhcCCe-EEE--ECCH------HHHHHHHhCCCCEEEECCC-------HhHHHHHHHHHHhcCCcE
Confidence 3444455555666 677886 432 2331 1333444469999999988 689999999986 5689
Q ss_pred EEEEecCCccccccccc--C----CCCCcchHHHHHHHHHHHHHcC
Q 042295 159 LIIGSGSATHNLKALQF--D----GDSVVSWASEFDCWLKDALLQG 198 (264)
Q Consensus 159 ~iIaSG~lsH~l~~~~~--~----~~~~~~~~~~FD~~~~~~l~~g 198 (264)
+||+..+....+..... + ...+. -.++....+.++..+|
T Consensus 81 avv~~~~~~~~~~~~~~ll~~~i~~~~~~-~~~e~~~~i~~~~~~G 125 (176)
T PF06506_consen 81 AVVGYPNIIPGLESIEELLGVDIKIYPYD-SEEEIEAAIKQAKAEG 125 (176)
T ss_dssp EEEEESS-SCCHHHHHHHHT-EEEEEEES-SHHHHHHHHHHHHHTT
T ss_pred EEEecccccHHHHHHHHHhCCceEEEEEC-CHHHHHHHHHHHHHcC
Confidence 99999998876543321 1 01111 1256666666666654
No 54
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=53.20 E-value=21 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=17.6
Q ss_pred EEEEcCCCCCCCCCCChHHHHHHHHHHHHhhc
Q 042295 3 TFFISHGSPTLPIDESLQVRHFLKAWKEQVFL 34 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~ 34 (264)
.+|++||+|.- ++..+.++++.+.+.+
T Consensus 2 lllv~HGs~~~-----s~~~~~~~~~~~~l~~ 28 (101)
T cd03409 2 LLVVGHGSPYK-----DPYKKDIEAQAHNLAE 28 (101)
T ss_pred EEEEECCCCCC-----ccHHHHHHHHHHHHHH
Confidence 68999999754 1334556666666653
No 55
>PRK06703 flavodoxin; Provisional
Probab=50.72 E-value=44 Score=26.67 Aligned_cols=75 Identities=19% Similarity=0.122 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC---CChHHHHHHHHHhcc--cccCC
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE---KDGTYHYNVGKALAP--LKDEG 157 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~---~~~~~~~~lG~aL~~--~~d~~ 157 (264)
...+|+.|.+.+.+.|++ +....-...+.. -.+ +...|-+..++. ..|.....+=+.|.+ +.++.
T Consensus 15 T~~iA~~ia~~l~~~g~~-v~~~~~~~~~~~-------~l~--~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~ 84 (151)
T PRK06703 15 TEDIADLIKVSLDAFDHE-VVLQEMDGMDAE-------ELL--AYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKK 84 (151)
T ss_pred HHHHHHHHHHHHHhcCCc-eEEEehhhCCHH-------HHh--cCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCE
Confidence 346789999999888874 432111111110 011 233344433322 235556666555653 45778
Q ss_pred eEEEEecCCc
Q 042295 158 VLIIGSGSAT 167 (264)
Q Consensus 158 v~iIaSG~ls 167 (264)
++++|||+.+
T Consensus 85 ~~vfg~g~~~ 94 (151)
T PRK06703 85 VAVFGSGDTA 94 (151)
T ss_pred EEEEccCCCC
Confidence 9999999775
No 56
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=49.31 E-value=37 Score=33.86 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=62.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEe-cCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCccc
Q 042295 25 LKAWKEQVFLQKPNSILVISAHWETDVPTVNVV-RQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVK 103 (264)
Q Consensus 25 l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~-~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~ 103 (264)
.++..+++++..+|++|+++|+|.....++-.. ..|..++- |++ . +.||.--|+..+..+. +.|+ +..
T Consensus 62 A~~~a~kf~~~~Vd~tI~vtpcWcygset~dm~~~~P~alWg---fn~----p--erpGaVyLaA~lAaha-Q~Gl-p~f 130 (584)
T cd03556 62 AAACAEKFTRENVGATITVTPCWCYGSETMDMDPNTPKAIWG---FNG----T--ERPGAVYLAAVLAGHA-QKGI-PAF 130 (584)
T ss_pred HHHHHHHHhhcCCCEEEEecceecCcHHHHhhcccCCEEEEc---CCC----C--CCCchHHHHhhhhHHh-hCCC-Cce
Confidence 344556666778999999999998654433222 23555544 433 1 2378888888655444 4565 221
Q ss_pred ccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEEEec
Q 042295 104 EDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSG 164 (264)
Q Consensus 104 ~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iIaSG 164 (264)
. -+|-| + -+.+=+-+|-.+ .-...+..+-+.+++.++.++++.|||=
T Consensus 131 ~--IyG~~--v--------qd~~d~~iP~DV--~eKll~faRAa~AV~~Lkgksyl~IG~~ 177 (584)
T cd03556 131 G--IYGHD--V--------QEADDTTIPEDV--KEKILRFARAAIAVASMRGKSYLSIGSV 177 (584)
T ss_pred E--EecCC--c--------cccccccCcHHH--HHHHHHHHHHHHHHHHhcCCeEEEECCc
Confidence 1 11110 0 011111111111 1123455566666777889999999873
No 57
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=47.19 E-value=36 Score=25.23 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 042295 3 TFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKP 37 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 37 (264)
+++++|||.. ..+.+.+.++.+++++..|
T Consensus 2 ivlv~hGS~~------~~~~~~~~~l~~~l~~~~~ 30 (101)
T cd03416 2 LLLVGHGSRD------PRAAEALEALAERLRERLP 30 (101)
T ss_pred EEEEEcCCCC------HHHHHHHHHHHHHHHhhCC
Confidence 5899999932 2456778888888865444
No 58
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=46.91 E-value=74 Score=25.60 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEe--eccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEE
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWT--PLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLI 160 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~v--PL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~i 160 (264)
+-.++..+.+.+...|+. ++...+.|-+=.+-. -|.++-.+.+..+|-+.+-..-++++..+.-+.+++- +-|++
T Consensus 10 SG~~~~~~~~~~~~~g~g-~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a~~~--KPVv~ 86 (138)
T PF13607_consen 10 SGALGTAILDWAQDRGIG-FSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRAARR--KPVVV 86 (138)
T ss_dssp -HHHHHHHHHHHHHTT-E-ESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHHCCC--S-EEE
T ss_pred CHHHHHHHHHHHHHcCCC-eeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHHhcC--CCEEE
Confidence 456788888999888883 543222222111212 2666767789999999998667887777766666553 77888
Q ss_pred EEecC--------CcccccccccCCCCCcchHHHHHHHHHHH--HHcCCHHHHhcc
Q 042295 161 IGSGS--------ATHNLKALQFDGDSVVSWASEFDCWLKDA--LLQGRYEDVNHY 206 (264)
Q Consensus 161 IaSG~--------lsH~l~~~~~~~~~~~~~~~~FD~~~~~~--l~~gd~~~l~~~ 206 (264)
+=+|- .||.=. .......||..+.++ +.-.+.++|++.
T Consensus 87 lk~Grt~~g~~aa~sHTgs--------lag~~~~~~a~~~~aGv~~v~~~~el~~~ 134 (138)
T PF13607_consen 87 LKAGRTEAGARAAASHTGS--------LAGDDAVYDAALRQAGVVRVDDLDELLDA 134 (138)
T ss_dssp EE-----------------------------HHHHHHHHHHCTEEEESSHHHHHHH
T ss_pred EeCCCchhhhhhhhccCCc--------ccCcHHHHHHHHHHcCceEECCHHHHHHH
Confidence 88886 344211 111224555555542 334577777765
No 59
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=43.34 E-value=1.6e+02 Score=24.77 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeE---EEecCCCccCCCCCCcccccccc------CCCCCCHHHHHHHHHH
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWETDVPTV---NVVRQNDTIYDFYGFPEQLYKLK------YPAPGAPDLAKRVKEL 93 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i---~~~~~~~~~~D~~gfP~~~y~~~------y~~~g~~elA~~i~~~ 93 (264)
...+.+-+.+.+.+||+||.++-|-......+ ..+.....+-|-.|+...--.+. |...-+ .+++++.
T Consensus 47 ~~~~~~~~~~~~~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~lp---~~~l~~~ 123 (194)
T cd00501 47 KAVEVLPELIEEHKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFSTLP---VKAIVKA 123 (194)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCCCCCeeeecCC---HHHHHHH
Confidence 34444445555679999999988865444332 22222222344444411100000 111111 5888899
Q ss_pred HHhCCCCcccccCCCC--C-cceeEeecccccc-CCCCCeeeeeCC
Q 042295 94 LRTSGFNHVKEDTKRG--L-DHGAWTPLMLMYP-EANIPVCQLSLQ 135 (264)
Q Consensus 94 l~~~gid~~~~~~~~~--l-DHG~~vPL~~l~p-~~diPVV~is~~ 135 (264)
+++.|++ +..+.+-| + ++-.+.-|+..-. ..++|+.-|.++
T Consensus 124 l~~~g~~-~~~S~dAG~YlCn~~~Y~sL~~~~~~~~~~~a~FvHvP 168 (194)
T cd00501 124 LREAGIP-ARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVP 168 (194)
T ss_pred HHhcCCC-ceEcCCCCceeeHHHHHHHHHHHhccCCCceeceeecC
Confidence 9999994 65443222 1 2222222333211 123666666666
No 60
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=43.28 E-value=46 Score=25.33 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=18.7
Q ss_pred cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 042295 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQK 36 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~ 36 (264)
.++|++|||+... .+.++++.+.+++..
T Consensus 2 ~illvgHGSr~~~-------~~~~~~l~~~l~~~~ 29 (103)
T cd03413 2 AVVFMGHGTDHPS-------NAVYAALEYVLREED 29 (103)
T ss_pred eEEEEECCCCchh-------hhHHHHHHHHHHhcC
Confidence 3689999996541 356777777775433
No 61
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=40.76 E-value=56 Score=25.33 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 042295 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKP 37 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 37 (264)
-+++++|||.. ..+.+.++++.+.+++..+
T Consensus 3 ~lvlv~hGS~~------~~~~~~~~~~~~~l~~~~~ 32 (126)
T PRK00923 3 GLLLVGHGSRL------PYNKEVVTKIAEKIKEKHP 32 (126)
T ss_pred EEEEEeCCCCC------hHHHHHHHHHHHHHHHhCC
Confidence 36889999942 3445677888887754333
No 62
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=40.22 E-value=60 Score=24.67 Aligned_cols=29 Identities=7% Similarity=-0.005 Sum_probs=20.2
Q ss_pred EEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 042295 3 TFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKP 37 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 37 (264)
+++++|||.. ..+.+.++++++.+++.-+
T Consensus 3 ~llv~HGS~~------~~~~~~~~~l~~~l~~~~~ 31 (117)
T cd03414 3 VVLVGRGSSD------PDANADVAKIARLLEEGTG 31 (117)
T ss_pred EEEEcCCCCC------HHHHHHHHHHHHHHHHhcC
Confidence 6899999942 3445678888888864333
No 63
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=39.99 E-value=52 Score=26.07 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.6
Q ss_pred cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhh
Q 042295 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVF 33 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~ 33 (264)
..++++|||. +..+.+.++++++.++
T Consensus 2 ~lllvgHGSR------~~~~~~~~~~la~~l~ 27 (125)
T cd03415 2 AIIIITHGSR------RNTFNEDMEEWAAYLE 27 (125)
T ss_pred EEEEEecCCC------ChHHHHHHHHHHHHHH
Confidence 4689999993 3467788999999886
No 64
>PRK07308 flavodoxin; Validated
Probab=39.78 E-value=1.2e+02 Score=23.91 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC---CChHHHHHHHHHhccc--ccCC
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE---KDGTYHYNVGKALAPL--KDEG 157 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~---~~~~~~~~lG~aL~~~--~d~~ 157 (264)
-.++|+.|.+.+.+.|++ +....-...|. .-+ .+...|-+..++. .-|....++=+.|... .++.
T Consensus 15 Te~iA~~ia~~l~~~g~~-~~~~~~~~~~~------~~l---~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~ 84 (146)
T PRK07308 15 TEEIADIVADKLRELGHD-VDVDECTTVDA------SDF---EDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKI 84 (146)
T ss_pred HHHHHHHHHHHHHhCCCc-eEEEecccCCH------hHh---ccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCE
Confidence 346789999999888874 43211111111 001 1223344444332 2345566666666554 5788
Q ss_pred eEEEEecCC
Q 042295 158 VLIIGSGSA 166 (264)
Q Consensus 158 v~iIaSG~l 166 (264)
++|+|||+.
T Consensus 85 ~~vfG~Gd~ 93 (146)
T PRK07308 85 YGVVGSGDT 93 (146)
T ss_pred EEEEeeCCC
Confidence 999999995
No 65
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=39.75 E-value=2.2e+02 Score=28.71 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCC-CCCChHHHHHHHHHhcc-----cccC
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQ-PEKDGTYHYNVGKALAP-----LKDE 156 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~-~~~~~~~~~~lG~aL~~-----~~d~ 156 (264)
..++|++|.+.+++.|++ +.... .. |. ...- .++.+.=|+.+|.. .+-.|.....|=+.|.+ |.+.
T Consensus 75 ae~lA~~la~~l~~~g~~-~~v~~-~~-d~----~~~~-L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~~~~L~~~ 146 (600)
T PRK10953 75 ARRVAEQLRDDLLAAKLN-VNLVN-AG-DY----KFKQ-IAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENT 146 (600)
T ss_pred HHHHHHHHHHHHHhCCCC-cEEec-hH-hC----CHhH-hccCCeEEEEECCCCCCCCChhHHHHHHHHhhCcCcCCCCC
Confidence 445899999999999985 43211 00 00 0000 11222223333332 12356666666666642 4567
Q ss_pred CeEEEEecCCcc
Q 042295 157 GVLIIGSGSATH 168 (264)
Q Consensus 157 ~v~iIaSG~lsH 168 (264)
+++|+|.|+.|.
T Consensus 147 ~faVfGLGDssY 158 (600)
T PRK10953 147 AFAVFGLGDTSY 158 (600)
T ss_pred EEEEEccCccCH
Confidence 999999999984
No 66
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=38.87 E-value=3.7e+02 Score=25.93 Aligned_cols=119 Identities=17% Similarity=0.244 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhCCCCccccc----CCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCe
Q 042295 83 APDLAKRVKELLRTSGFNHVKED----TKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGV 158 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~----~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v 158 (264)
+-.++..+...+.+.|+. .+.. ++..+|-+- -|.++.-|.+..+|-+.+-..-++++..+.-+..+ +.+-|
T Consensus 159 SG~~~~~~~~~~~~~g~g-~s~~vs~Gn~~d~~~~d--~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~--~~KPV 233 (447)
T TIGR02717 159 SGALLTALLDWAEKNGVG-FSYFVSLGNKADIDESD--LLEYLADDPDTKVILLYLEGIKDGRKFLKTAREIS--KKKPI 233 (447)
T ss_pred hHHHHHHHHHHHHhcCCC-cceEEECCchhhCCHHH--HHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHc--CCCCE
Confidence 456788888888888773 4431 222222221 26666677899999999986667776665555554 36889
Q ss_pred EEEEecCCcccccccccCCCCCcchHHHHHHHHHHH--HHcCCHHHHhcc
Q 042295 159 LIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDA--LLQGRYEDVNHY 206 (264)
Q Consensus 159 ~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~--l~~gd~~~l~~~ 206 (264)
+++=+|-..+.-+...............||..+.++ +...+.++|++.
T Consensus 234 v~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~~~~~el~~~ 283 (447)
T TIGR02717 234 VVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRADSIEELFDL 283 (447)
T ss_pred EEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEeCCHHHHHHH
Confidence 999888754321111000011111235566665553 334566666664
No 67
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=37.94 E-value=1.1e+02 Score=30.86 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCC-CCCChHHHHHHHHHhcc-----cccCC
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQ-PEKDGTYHYNVGKALAP-----LKDEG 157 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~-~~~~~~~~~~lG~aL~~-----~~d~~ 157 (264)
..+|++|.+.+++.|++ +... .+|.- ... -.++.+.=|+-+|.. ....|..+.+|=+.|.+ +.+.+
T Consensus 73 e~~A~~l~~~l~~~g~~-~~v~---~~~d~---~~~-~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~~~~L~~~~ 144 (597)
T TIGR01931 73 RRLAKRLAEKLEAAGFS-VRLS---SADDY---KFK-QLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKKAPKLENLR 144 (597)
T ss_pred HHHHHHHHHHHHhCCCc-cEEe---chHHC---CHh-hcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCCCcccCCCe
Confidence 45899999999988984 4321 11110 000 011222213333332 12356777777777753 45679
Q ss_pred eEEEEecCCccc
Q 042295 158 VLIIGSGSATHN 169 (264)
Q Consensus 158 v~iIaSG~lsH~ 169 (264)
++|+|.|+.+..
T Consensus 145 ~aVfGLGDssY~ 156 (597)
T TIGR01931 145 YSVLGLGDSSYE 156 (597)
T ss_pred EEEEeCCcCCHH
Confidence 999999999853
No 68
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=37.64 E-value=58 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=23.7
Q ss_pred EEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEE
Q 042295 3 TFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSIL 41 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IV 41 (264)
+++++||| .+..+.+.++++.+.+++.-|+..|
T Consensus 3 illv~fGS------~~~~~~~~~~~i~~~l~~~~p~~~V 35 (127)
T cd03412 3 ILLVSFGT------SYPTAEKTIDAIEDKVRAAFPDYEV 35 (127)
T ss_pred EEEEeCCC------CCHHHHHHHHHHHHHHHHHCCCCeE
Confidence 68899998 2235667888888888766666554
No 69
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=37.51 E-value=2.7e+02 Score=24.08 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCCCCC
Q 042295 21 VRHFLKAWKEQVFLQKPNSILVISAHWET 49 (264)
Q Consensus 21 ~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~ 49 (264)
+.++.+.+.+.+.+.+||+||.++=+--.
T Consensus 43 ~~~~~~~l~~~l~~~~Pd~vi~~G~a~g~ 71 (212)
T TIGR00504 43 FFEAIEALQQAIDEIEPDIVIMLGLAPGR 71 (212)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEeccCCCc
Confidence 34556666666667899999999876533
No 70
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=36.75 E-value=2e+02 Score=24.90 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCC
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWE 48 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~ 48 (264)
++.+.+-+.+.+.+||+||.++=|--
T Consensus 48 ~~~~~l~~~l~~~~Pd~vih~G~a~~ 73 (215)
T PRK13197 48 KSAEVLKEAIEEVQPDAVICIGQAGG 73 (215)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccCCC
Confidence 44555555555678999999987643
No 71
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.74 E-value=2.3e+02 Score=24.44 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCCCCCCe---EEEecCCCccCCCCCC-ccccccccCCCCCCHH----H-HHHHHHH
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWETDVPT---VNVVRQNDTIYDFYGF-PEQLYKLKYPAPGAPD----L-AKRVKEL 93 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~---i~~~~~~~~~~D~~gf-P~~~y~~~y~~~g~~e----l-A~~i~~~ 93 (264)
+..+.+.+.+.+.+||+||.+.=|--..... +.++.....+-|..|. |... .-...|... | .+++++.
T Consensus 47 ~~~~~l~~~l~~~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~---~i~~~gp~~y~ttlp~~~l~~~ 123 (208)
T PRK13194 47 RAREELEKVLDEIKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDE---PIVEGAPAAYFATLPTREIVEE 123 (208)
T ss_pred hHHHHHHHHHHHhCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCC---cccCCCCCcccCCCCHHHHHHH
Confidence 3444455555567999999997774433322 2333222234454443 2110 000011100 1 5788888
Q ss_pred HHhCCCCccccc
Q 042295 94 LRTSGFNHVKED 105 (264)
Q Consensus 94 l~~~gid~~~~~ 105 (264)
+++.|+ ++..+
T Consensus 124 l~~~gi-p~~~S 134 (208)
T PRK13194 124 LKKNGI-PAVLS 134 (208)
T ss_pred HHhcCC-CcEEe
Confidence 899999 46544
No 72
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=35.58 E-value=35 Score=28.29 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=20.7
Q ss_pred HHHHHHHHhcccc-cCCeEEEEecCCcc
Q 042295 142 YHYNVGKALAPLK-DEGVLIIGSGSATH 168 (264)
Q Consensus 142 ~~~~lG~aL~~~~-d~~v~iIaSG~lsH 168 (264)
.+-++|+.|+..+ +++|+|||||=+.+
T Consensus 43 ~~~~~~~~l~~~~~~~~vLVLGTgEfMy 70 (155)
T PF12500_consen 43 ALQALAARLAAKRPGERVLVLGTGEFMY 70 (155)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccchHHH
Confidence 3467777777665 58999999998755
No 73
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=34.78 E-value=2.5e+02 Score=24.59 Aligned_cols=79 Identities=9% Similarity=0.062 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCCCCCC---eEEEecCC---CccCCCCCC-ccccccccCCCCCCHH----H-HHHH
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWETDVP---TVNVVRQN---DTIYDFYGF-PEQLYKLKYPAPGAPD----L-AKRV 90 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~---~i~~~~~~---~~~~D~~gf-P~~~y~~~y~~~g~~e----l-A~~i 90 (264)
++.+.+.+.+.+.+||+||.+.=+--.... .+.++... ..+-|-.|. |.. ..-...|... | .++|
T Consensus 48 ~~~~~l~~~i~~~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~---~~I~~~gp~ay~stLpv~~i 124 (222)
T PRK13195 48 ESIAAAQQAIAEIEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVG---EPTDPAGPVAYHATVPVRAM 124 (222)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCC---CcccCCCcceeecCCCHHHH
Confidence 344455555667799999999655332222 13333211 124444443 211 0111111111 1 5888
Q ss_pred HHHHHhCCCCccccc
Q 042295 91 KELLRTSGFNHVKED 105 (264)
Q Consensus 91 ~~~l~~~gid~~~~~ 105 (264)
++.++++|+ ++..+
T Consensus 125 v~~l~~~gi-pa~vS 138 (222)
T PRK13195 125 VLAMRKAGV-PADVS 138 (222)
T ss_pred HHHHHhcCC-CceEe
Confidence 999999999 56544
No 74
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=34.29 E-value=76 Score=20.68 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=23.2
Q ss_pred CeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 128 PVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 128 PVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
|+|.|.+....+.++--+|.++|.++
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~ 26 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEA 26 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 88999988788999999999998885
No 75
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=33.39 E-value=1.1e+02 Score=23.90 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeC-CCCCCh---H-HHHHHHHHhc------c
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSL-QPEKDG---T-YHYNVGKALA------P 152 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~-~~~~~~---~-~~~~lG~aL~------~ 152 (264)
..+|++|.+.|++.|++ +..-.-...|.. +..+ .+.+.=|+-+|. +....| . ...++-.... .
T Consensus 11 e~~A~~ia~~l~~~g~~-~~~~~~~~~~~~----~~~~-~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
T PF00258_consen 11 EKMAEAIAEGLRERGVE-VRVVDLDDFDDS----PSDL-SEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPD 84 (143)
T ss_dssp HHHHHHHHHHHHHTTSE-EEEEEGGGSCHH----HHHH-CTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSH
T ss_pred HHHHHHHHHHHHHcCCc-eeeechhhhhhh----hhhh-hhhceeeEeecccCCCcchhhhhhhhhhccccccccccccc
Confidence 46899999999999984 432111111211 1111 122222333332 212112 1 3455555442 3
Q ss_pred cccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHH
Q 042295 153 LKDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKD 193 (264)
Q Consensus 153 ~~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~ 193 (264)
+...+++|+|+|+.+-.- +...++.+|+++.+
T Consensus 85 l~~~~~avfg~Gd~~~~~---------f~~~~k~l~~~l~~ 116 (143)
T PF00258_consen 85 LKGKKYAVFGLGDSGYGG---------FCAAAKKLDERLEE 116 (143)
T ss_dssp CTTCEEEEEEEEETTSST---------TTHHHHHHHHHHHH
T ss_pred cccceeeeeecCCccchh---------hhhHHHHHHHHHHH
Confidence 567889999999874321 33455667766655
No 76
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=32.90 E-value=78 Score=28.26 Aligned_cols=41 Identities=17% Similarity=0.405 Sum_probs=23.6
Q ss_pred EEEEcCCCCCCC-CCCC-----hHHHHHHHHHHHHhhcCCC-CEEEEE-cCC
Q 042295 3 TFFISHGSPTLP-IDES-----LQVRHFLKAWKEQVFLQKP-NSILVI-SAH 46 (264)
Q Consensus 3 ~~fisHG~P~~~-~~~~-----~~~~~~l~~l~~~l~~~~P-d~IVvi-S~H 46 (264)
+||.+||+|.++ +++. ....+.|+++.++ .+- +.||++ +++
T Consensus 111 iy~~~HG~~~~l~~~~~~~l~~~~L~~~L~~m~~~---~~y~~lv~~veaC~ 159 (256)
T PF01650_consen 111 IYFTGHGGPGFLKFPDGEELTADDLADALDKMHEK---KRYKKLVFVVEACY 159 (256)
T ss_pred EEEeccCCCCcccCCCcccccHHHHHHHHHHHHhh---CCcceEEEEEeccc
Confidence 689999999865 3321 2445556666543 232 345556 445
No 77
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=32.46 E-value=53 Score=29.42 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCCC
Q 042295 22 RHFLKAWKEQVFLQKPNSILVISAHWE 48 (264)
Q Consensus 22 ~~~l~~l~~~l~~~~Pd~IVviS~Hw~ 48 (264)
.+.+++..+++++.++|.||++| ||-
T Consensus 168 ~~~~~~~v~~lr~~~~D~II~l~-H~G 193 (281)
T cd07409 168 IEAAQKEADKLKAQGVNKIIALS-HSG 193 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEe-ccC
Confidence 34566666677666899999886 984
No 78
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=31.84 E-value=19 Score=29.85 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=13.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCCCCCC
Q 042295 25 LKAWKEQVFLQKPNSILVISAHWETDV 51 (264)
Q Consensus 25 l~~l~~~l~~~~Pd~IVviS~Hw~~~~ 51 (264)
|..+++.+ ..-++|+||||.|++..
T Consensus 15 m~s~~~~l--k~KK~V~iiSPQWF~k~ 39 (163)
T PF04918_consen 15 MGSIGDQL--KNKKAVFIISPQWFTKK 39 (163)
T ss_dssp HTTSHHHH--TT-EEEEE--GGG--TT
T ss_pred HHhhhccc--cCCcEEEEECCcccCCC
Confidence 44556665 35588999999999854
No 79
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=31.51 E-value=1.1e+02 Score=28.40 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccC-CCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeE
Q 042295 81 PGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPE-ANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVL 159 (264)
Q Consensus 81 ~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~ 159 (264)
+.+.+...++++.+.+.|||.+...... .-.-.|+.+-.+-.. ..|.+.....+...+|....+--..|..+.+.|+.
T Consensus 23 ~~~~~~~~~~a~~AE~~Gfd~~~~~~~~-~~~~p~~~laalA~~T~rI~l~~~v~~~~~~P~~~A~~~AtLD~lS~GR~~ 101 (346)
T TIGR03565 23 AVDHGYLKQIAQAADRLGYTGVLLPTGR-SCEDSWVTASALAPVTERLKFLVAVRPGLMSPTVAARMAATLDRLSGGRLL 101 (346)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCC-CCCCHHHHHHHHHHhcCeeEEEEEecCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 3467888999999999999733221110 011122223333222 46666554344356787777777778778888988
Q ss_pred E-EEecCCccc
Q 042295 160 I-IGSGSATHN 169 (264)
Q Consensus 160 i-IaSG~lsH~ 169 (264)
+ ||+|..-..
T Consensus 102 lgvg~G~~~~e 112 (346)
T TIGR03565 102 INVVTGGDPVE 112 (346)
T ss_pred EEEeCCCCHHH
Confidence 8 999975433
No 80
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=31.24 E-value=13 Score=29.47 Aligned_cols=19 Identities=42% Similarity=0.739 Sum_probs=15.1
Q ss_pred hcccccCCeEEEEecCCcc
Q 042295 150 LAPLKDEGVLIIGSGSATH 168 (264)
Q Consensus 150 L~~~~d~~v~iIaSG~lsH 168 (264)
+..+.+++|+|||+|+..-
T Consensus 7 ~~~l~~~~vlviGaGg~ar 25 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAAR 25 (135)
T ss_dssp HSTGTTSEEEEESSSHHHH
T ss_pred cCCcCCCEEEEECCHHHHH
Confidence 3456789999999999854
No 81
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.14 E-value=20 Score=31.39 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=14.5
Q ss_pred ccCCeEEEEecCCcccc
Q 042295 154 KDEGVLIIGSGSATHNL 170 (264)
Q Consensus 154 ~d~~v~iIaSG~lsH~l 170 (264)
++.+|+|||||+++-.|
T Consensus 3 sk~kvaiigsgni~tdl 19 (310)
T COG4569 3 SKRKVAIIGSGNIGTDL 19 (310)
T ss_pred CcceEEEEccCcccHHH
Confidence 35689999999998876
No 82
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=29.38 E-value=63 Score=29.07 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCCCC
Q 042295 22 RHFLKAWKEQVFLQKPNSILVISAHWET 49 (264)
Q Consensus 22 ~~~l~~l~~~l~~~~Pd~IVviS~Hw~~ 49 (264)
.+..+++.+++++.++|.||++| ||-.
T Consensus 159 ~~~~~~~v~~lk~~~~D~VI~ls-H~G~ 185 (285)
T cd07405 159 IHEAKEVVPELKQEKPDIVIAAT-HMGH 185 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe-cccc
Confidence 44566666777666899998887 9854
No 83
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.18 E-value=1.5e+02 Score=26.90 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCCh----HHHHHHHHHhcc---c
Q 042295 81 PGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDG----TYHYNVGKALAP---L 153 (264)
Q Consensus 81 ~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~----~~~~~lG~aL~~---~ 153 (264)
+-.|.+..+|.+.|.+.|++ +.......-+ ..++..| .+.+.++...+. ++..++++.|.- +
T Consensus 15 ~DrpGIVa~VT~~La~~~vN-I~dls~~~~~---~~~~F~m-------~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~i 83 (286)
T PRK13011 15 PSAAGIVAAVTGFLAEHGCY-ITELHSFDDR---LSGRFFM-------RVEFHSEEGLDEDALRAGFAPIAARFGMQWEL 83 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCC-EEEeeeeecC---CCCeEEE-------EEEEecCCCCCHHHHHHHHHHHHHHhCcEEEE
Confidence 34667899999999999986 5432221000 2233333 344444434333 334556665541 1
Q ss_pred ----ccCCeEEEEecCCccccc
Q 042295 154 ----KDEGVLIIGSGSATHNLK 171 (264)
Q Consensus 154 ----~d~~v~iIaSG~lsH~l~ 171 (264)
+..||+|++||. .|||.
T Consensus 84 ~~~~~~~ri~vl~Sg~-g~nl~ 104 (286)
T PRK13011 84 HDPAARPKVLIMVSKF-DHCLN 104 (286)
T ss_pred eecccCceEEEEEcCC-cccHH
Confidence 356999999996 57774
No 84
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=28.50 E-value=73 Score=17.84 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCC
Q 042295 80 APGAPDLAKRVKELLRTSGFN 100 (264)
Q Consensus 80 ~~g~~elA~~i~~~l~~~gid 100 (264)
..|+++.|..+.+..++.|+.
T Consensus 13 ~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 13 KAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HCCCHHHHHHHHHHHHHhCCC
Confidence 368999999999999888874
No 85
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=27.67 E-value=2.7e+02 Score=25.06 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 042295 83 APDLAKRVKELLRTSGFN 100 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid 100 (264)
+++|.+.+.+.+++.|++
T Consensus 138 ~~~Lr~~l~~aA~~~g~~ 155 (267)
T PRK08564 138 CPELRKIIIETAKELGIR 155 (267)
T ss_pred CHHHHHHHHHHHHHcCCc
Confidence 889999999999888873
No 86
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=27.43 E-value=88 Score=27.90 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=47.2
Q ss_pred cEEEEcCC--CCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEE-cCCCC----CCCCe-EEEec-CCCccCCCCCCccc
Q 042295 2 ETFFISHG--SPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVI-SAHWE----TDVPT-VNVVR-QNDTIYDFYGFPEQ 72 (264)
Q Consensus 2 p~~fisHG--~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~----~~~~~-i~~~~-~~~~~~D~~gfP~~ 72 (264)
|+.+.||| +|...| ++++|++ ..-|++|=+ |.=.. ..+.. |+.+. ..+ |...+
T Consensus 59 ~v~v~StGIGgPSaaI--------AvEEL~~----lGa~tfiRVGT~Galq~~i~~Gdvvi~tgAvr~d------G~s~~ 120 (248)
T COG2820 59 PVTVCSTGIGGPSAAI--------AVEELAR----LGAKTFIRVGTTGALQPDINVGDVVVATGAVRLD------GASKH 120 (248)
T ss_pred EEEEEecCCCCchHHH--------HHHHHHh----cCCeEEEEeeccccccCCCCCCCEEEeccccccc------ccccc
Confidence 67889998 544433 4666644 356788777 33221 22332 33322 221 11122
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhCCC
Q 042295 73 LYKLKYPAPGAPDLAKRVKELLRTSGF 99 (264)
Q Consensus 73 ~y~~~y~~~g~~elA~~i~~~l~~~gi 99 (264)
.-..+||+--|.++..+|++.+++.++
T Consensus 121 y~~~~~PAv~d~~~t~al~~aa~~~~~ 147 (248)
T COG2820 121 YAPEEFPAVADFELTNALVEAAESLGV 147 (248)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 122448999999999999999998876
No 87
>PLN02757 sirohydrochlorine ferrochelatase
Probab=27.18 E-value=1.1e+02 Score=24.99 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=19.8
Q ss_pred EEEEcCCCCCCCCCCChHHHHHHHHHHHHhhc
Q 042295 3 TFFISHGSPTLPIDESLQVRHFLKAWKEQVFL 34 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~ 34 (264)
+++++|||. +..+.+.++++++.+++
T Consensus 16 lllvgHGSr------d~~a~~~~~~la~~l~~ 41 (154)
T PLN02757 16 VVIVDHGSR------RKESNLMLEEFVAMYKQ 41 (154)
T ss_pred EEEEeCCCC------CHHHHHHHHHHHHHHHh
Confidence 688999993 34567888888888853
No 88
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=27.07 E-value=1.2e+02 Score=28.00 Aligned_cols=119 Identities=17% Similarity=0.231 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCC---CCCCccccccccCCCCCCHHHHHHHHHHHHh
Q 042295 20 QVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYD---FYGFPEQLYKLKYPAPGAPDLAKRVKELLRT 96 (264)
Q Consensus 20 ~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D---~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~ 96 (264)
.+.++|++++..+...+-++=||.+.=..+.+. -+.++..+.| +.|+|. +.--.|.|+-..+.+...+.+
T Consensus 84 ~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~---dG~sHq~~EDiaimR~lpn----~~V~~P~D~v~~~~i~~~~~~ 156 (312)
T COG3958 84 LSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGE---DGSSHQALEDIAIMRGLPN----MTVIAPADAVETRAILDQIAD 156 (312)
T ss_pred HHHHHHHHHHHHhhhccCCeEEEEecCCcccCC---CCccchhHHHHHHHhcCCC----ceEEccCcHHHHHHHHHHHHh
Confidence 456899999999876666664444311222211 1223444445 568886 333467788888888877653
Q ss_pred CCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHH--hcccccCCeEEEEecCCcccc
Q 042295 97 SGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKA--LAPLKDEGVLIIGSGSATHNL 170 (264)
Q Consensus 97 ~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~a--L~~~~d~~v~iIaSG~lsH~l 170 (264)
..= |+- .=....+.|++ +... ..-|++|++ |++ .+.+.||+||-++|.-
T Consensus 157 ~~G-P~Y----------------~Rl~R~~~p~~---~~~~---~~~F~iGka~vLrd--G~D~tiiA~G~mv~~a 207 (312)
T COG3958 157 YKG-PVY----------------MRLGRGKVPVV---VDEG---GYTFEIGKANVLRD--GSDLTIIATGVMVAEA 207 (312)
T ss_pred cCC-CEE----------------EEecCCCCCce---ecCC---CceEeccceeEeec--CCceEEEecCcchHHH
Confidence 221 221 11112244433 1111 345788876 333 4679999999999864
No 89
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=26.69 E-value=80 Score=27.97 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCCCCC
Q 042295 22 RHFLKAWKEQVFLQKPNSILVISAHWETD 50 (264)
Q Consensus 22 ~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~ 50 (264)
.+++++..+++++.++|.||+++ ||-..
T Consensus 169 ~~~~~~~v~~lr~~~~D~IIvl~-H~g~~ 196 (277)
T cd07410 169 VETAKKYVPKLRAEGADVVVVLA-HGGFE 196 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe-cCCcC
Confidence 34566777777666899888877 98443
No 90
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=26.53 E-value=1.2e+02 Score=20.34 Aligned_cols=27 Identities=7% Similarity=0.287 Sum_probs=24.5
Q ss_pred CCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 127 IPVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 127 iPVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
.|+|.|.+....|.++--+|.++|-++
T Consensus 1 MP~i~i~~~~Grs~EqK~~L~~~it~a 27 (60)
T PRK02289 1 MPFVRIDLFEGRSQEQKNALAREVTEV 27 (60)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 489999999889999999999999886
No 91
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=26.40 E-value=84 Score=27.67 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCCCC
Q 042295 20 QVRHFLKAWKEQVFLQKPNSILVISAHWE 48 (264)
Q Consensus 20 ~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~ 48 (264)
...+.++++.+.+++.++|+||++| |+.
T Consensus 155 d~~~~~~~~v~~~~~~~~D~iVvl~-H~g 182 (257)
T cd07406 155 DYVETARELVDELREQGADLIIALT-HMR 182 (257)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEe-ccC
Confidence 3455666766667778899999998 873
No 92
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=26.12 E-value=2.1e+02 Score=26.06 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=23.6
Q ss_pred CCChHHHHHHHHHhccccc---CCeEEEEecCCcc
Q 042295 137 EKDGTYHYNVGKALAPLKD---EGVLIIGSGSATH 168 (264)
Q Consensus 137 ~~~~~~~~~lG~aL~~~~d---~~v~iIaSG~lsH 168 (264)
.++++...++++.|+++.+ .+++++..||=+.
T Consensus 262 ~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~ 296 (311)
T PF00850_consen 262 NLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNP 296 (311)
T ss_dssp BB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCCh
Confidence 3678999999999999843 3899999998655
No 93
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=25.53 E-value=3.5e+02 Score=22.30 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC----------CChHHHHHHHHHhcc
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE----------KDGTYHYNVGKALAP 152 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~----------~~~~~~~~lG~aL~~ 152 (264)
+++-..+..+.+.+.++| .... .+.+..... +.-...+..+|+|.+..... .+.+....+++.|.+
T Consensus 40 ~~~~~~~~~~~~~~~~~d-~ii~--~~~~~~~~~-~~~~l~~~~ip~v~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 115 (264)
T cd01537 40 DAEKQLSALENLIARGVD-GIII--APSDLTAPT-IVKLARKAGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEHLAE 115 (264)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEE--ecCCCcchh-HHHHhhhcCCCEEEeccCCCCCcccceEecCcHHHHHHHHHHHHH
Confidence 445555555555556665 2211 122222211 11122346788887654321 123444555555555
Q ss_pred cccCCeEEEEecC
Q 042295 153 LKDEGVLIIGSGS 165 (264)
Q Consensus 153 ~~d~~v~iIaSG~ 165 (264)
...++|++|+...
T Consensus 116 ~g~~~i~~i~~~~ 128 (264)
T cd01537 116 KGHRRIALLAGPL 128 (264)
T ss_pred hcCCcEEEEECCC
Confidence 5567999997543
No 94
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=24.90 E-value=2.2e+02 Score=26.28 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCCcccccCCCCCcceeEeec-cccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEEEecCC
Q 042295 88 KRVKELLRTSGFNHVKEDTKRGLDHGAWTPL-MLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSGSA 166 (264)
Q Consensus 88 ~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL-~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iIaSG~l 166 (264)
+-|.+.|+++|+. ......-+.|---+.+. ...-++.|+--|.+.....+|. .+|=+|++-|++-++++|+++-=
T Consensus 115 ~gi~~eL~~aG~~-~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hfsy---~KL~kA~~yLqnP~clflatn~D 190 (306)
T KOG2882|consen 115 EGIREELDEAGFE-YFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHFSY---PKLMKALNYLQNPGCLFLATNRD 190 (306)
T ss_pred hhhhHHHHHcCce-eecCCCCcccccccccchhhcCCCCCCCEEEEecccccCH---HHHHHHHHHhCCCCcEEEeccCc
Confidence 4455667777873 32222222222122333 2334578899999999888876 45566999999999999998864
Q ss_pred c
Q 042295 167 T 167 (264)
Q Consensus 167 s 167 (264)
+
T Consensus 191 ~ 191 (306)
T KOG2882|consen 191 A 191 (306)
T ss_pred c
Confidence 4
No 95
>COG4031 Predicted metal-binding protein [General function prediction only]
Probab=24.61 E-value=93 Score=26.75 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=26.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCEEEEEcCC-CC
Q 042295 16 DESLQVRHFLKAWKEQVFLQKPNSILVISAH-WE 48 (264)
Q Consensus 16 ~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H-w~ 48 (264)
+++...+.+.++|+++|..++|+.|++..+| |.
T Consensus 53 Dedg~lRNl~erlae~i~s~rpe~~~v~gs~e~I 86 (227)
T COG4031 53 DEDGSLRNLYERLAERIYSYRPESIVVSGSEELI 86 (227)
T ss_pred CCcchHHHHHHHHHHHHHhcCccceEecCChHHH
Confidence 3445677889999999999999999999665 64
No 96
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=24.43 E-value=91 Score=25.44 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccc-cCCeEEEEe
Q 042295 85 DLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLK-DEGVLIIGS 163 (264)
Q Consensus 85 elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~-d~~v~iIaS 163 (264)
+|-+.|.+.|++.|.+ +. |.|+ ...-| =|.-..++++++++=+ +++|+|=||
T Consensus 13 ~lK~~l~~~L~~~G~e-V~-------D~G~-------~~~~d------------Ypd~a~~va~~V~~~~~~~GIliCGT 65 (142)
T PRK08621 13 ELKEVVKDYLEDNKYE-VV-------DVTE-------EGAED------------FVDSTLAVAKEVNKSEDNLGIVIDAY 65 (142)
T ss_pred HHHHHHHHHHHHCCCE-EE-------ECCC-------CCCCC------------cHHHHHHHHHHHHcCCCceEEEEcCC
Confidence 5788999999999983 52 3443 00011 1344678888886643 678999999
Q ss_pred cC
Q 042295 164 GS 165 (264)
Q Consensus 164 G~ 165 (264)
|-
T Consensus 66 Gi 67 (142)
T PRK08621 66 GA 67 (142)
T ss_pred Ch
Confidence 95
No 97
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=24.29 E-value=2.2e+02 Score=24.35 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCe---EEEecCCCccCCCCCC-ccccccccCCCCCCHH-----HHHHHHH
Q 042295 22 RHFLKAWKEQVFLQKPNSILVISAHWETDVPT---VNVVRQNDTIYDFYGF-PEQLYKLKYPAPGAPD-----LAKRVKE 92 (264)
Q Consensus 22 ~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~---i~~~~~~~~~~D~~gf-P~~~y~~~y~~~g~~e-----lA~~i~~ 92 (264)
.+..+.+.+.+.+.+||+||-+.=+--..... +..+.....+-|..|+ |.. ......|... =.++|++
T Consensus 46 ~~~~~~l~~~l~~~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~---~~i~~~gp~~~~t~lp~~~l~~ 122 (202)
T PF01470_consen 46 EKAFEALEELLEEHQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKD---EPIVPDGPEAYFTTLPVRALVE 122 (202)
T ss_dssp HHHHHHHHHHHHHH--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ES---B-SSTTS-SEEE-BS-HHHHHH
T ss_pred HhHHHHHHHHHHhcCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCC---ccccCCCccceecCCCHHHHHH
Confidence 34445555556667999999884432222222 2222211123344443 221 1111112111 2477888
Q ss_pred HHHhCCCCccccc
Q 042295 93 LLRTSGFNHVKED 105 (264)
Q Consensus 93 ~l~~~gid~~~~~ 105 (264)
.|+++|+ ++..+
T Consensus 123 ~l~~~gi-p~~~S 134 (202)
T PF01470_consen 123 ALREAGI-PVEIS 134 (202)
T ss_dssp HHHHTT---EEEE
T ss_pred HHHHcCC-CCccc
Confidence 8888888 46543
No 98
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=23.98 E-value=83 Score=21.27 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.9
Q ss_pred CCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 127 IPVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 127 iPVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
.|+|+|.+....|.++--+|.++|.++
T Consensus 1 MP~v~i~l~~grt~eqk~~l~~~it~~ 27 (64)
T PRK01964 1 MPIVQIQLLEGRPEEKIKNLIREVTEA 27 (64)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 499999998788999999999998886
No 99
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=23.78 E-value=4.8e+02 Score=22.58 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=45.3
Q ss_pred cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEE-cCCCCCC---CCeEEEecCCCccCCCCCCcc-ccccc
Q 042295 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVI-SAHWETD---VPTVNVVRQNDTIYDFYGFPE-QLYKL 76 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~~~---~~~i~~~~~~~~~~D~~gfP~-~~y~~ 76 (264)
++.+++||= .. ..+.-.++++.. ..+||.||.+ ++=-... ...+-+.... ..+ .|... .....
T Consensus 53 ~v~v~~~G~-----G~-~~aai~~~eli~---~~~~~~iI~~Gt~G~l~~~~~~GdvvI~~~a-~~~--~~~~~~~~~~~ 120 (232)
T TIGR00107 53 KISVMGHGM-----GI-PSISIYVYELIK---FYEVKTIIRIGSCGAIRPDVKLRDVIIAMGA-STD--SKYNRVRFVEV 120 (232)
T ss_pred EEEEEeCCC-----CH-hHHHHHHHHHHH---HcCCCEEEEEeccccCCCCCCCCCEEEECce-ecc--CCcchhhcCCC
Confidence 466777761 11 122223444432 3689999999 4432221 1123332211 111 12221 11234
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCC
Q 042295 77 KYPAPGAPDLAKRVKELLRTSGF 99 (264)
Q Consensus 77 ~y~~~g~~elA~~i~~~l~~~gi 99 (264)
.|++..|++|.+.+.+.+++.++
T Consensus 121 ~~~~~ad~~l~~~l~~~~~~~~~ 143 (232)
T TIGR00107 121 DFAAIADFELVELAYQTAKALGL 143 (232)
T ss_pred CcCccCCHHHHHHHHHHHHHCCC
Confidence 57888999999999998887666
No 100
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=23.65 E-value=80 Score=27.76 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=32.9
Q ss_pred CCCCeeeeeCCCCCC---hHHHHHHHHHhcccccCCeEEEEecCCcccc
Q 042295 125 ANIPVCQLSLQPEKD---GTYHYNVGKALAPLKDEGVLIIGSGSATHNL 170 (264)
Q Consensus 125 ~diPVV~is~~~~~~---~~~~~~lG~aL~~~~d~~v~iIaSG~lsH~l 170 (264)
...-||.+|+..... ....-.|-++++++.+++|+||+|.+=+.+.
T Consensus 101 ~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~ 149 (247)
T cd07491 101 KKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAF 149 (247)
T ss_pred CCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCc
Confidence 467789888763221 1235678889999888999999888765543
No 101
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=23.60 E-value=1.1e+02 Score=29.88 Aligned_cols=63 Identities=27% Similarity=0.293 Sum_probs=38.8
Q ss_pred CEEEEEcCC--CC-------CCCCeEEEecCCCccCC--CCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccC
Q 042295 38 NSILVISAH--WE-------TDVPTVNVVRQNDTIYD--FYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDT 106 (264)
Q Consensus 38 d~IVviS~H--w~-------~~~~~i~~~~~~~~~~D--~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~ 106 (264)
+-|-||.+| .. ..+..|++.++....+- .||.|+.. -..+++++-++.|.+.|++ +....
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~k--------l~k~i~d~~i~~l~~~Gv~-~~~~~ 194 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFK--------LPKDILDRRLELLERSGVE-FKLNV 194 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhh--------ccchHHHHHHHHHHHcCeE-EEEcc
Confidence 567778766 22 23456777765443332 35677632 2457899999999999984 65444
Q ss_pred CCC
Q 042295 107 KRG 109 (264)
Q Consensus 107 ~~~ 109 (264)
.+|
T Consensus 195 ~vG 197 (457)
T COG0493 195 RVG 197 (457)
T ss_pred eEC
Confidence 444
No 102
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=23.35 E-value=39 Score=34.21 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCcccc--cCCCCCcceeEeecccc---ccC--------CCCCeeeeeC
Q 042295 84 PDLAKRVKELLRTSGFNHVKE--DTKRGLDHGAWTPLMLM---YPE--------ANIPVCQLSL 134 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~--~~~~~lDHG~~vPL~~l---~p~--------~diPVV~is~ 134 (264)
..-+..|.+.|++.++ +.. |...+- .|++||+.=. +|. .+.|||++.+
T Consensus 532 ~~~~r~i~~aLk~g~~--v~il~Dq~~~~-~~~~v~FfG~~a~~~~g~~~lA~~~~~pvv~~~~ 592 (656)
T PRK15174 532 ADVVRACMQTLHSGQS--LVVAIDGALNL-SAPTIDFFGQQITYSTFCSRLAWKMHLPTVFSVP 592 (656)
T ss_pred chHHHHHHHHHHcCCe--EEEEeCCCCCC-CCceeccCCCccCcCcHHHHHHHHHCCCEEEeEE
Confidence 4557889999987764 332 444443 3788884321 221 3678888776
No 103
>TIGR03559 F420_Rv3520c probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis.
Probab=23.29 E-value=4e+02 Score=24.31 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccC-CCCCeeeeeCCC-CCChHHHHHHHHHhcccccCCeEE
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPE-ANIPVCQLSLQP-EKDGTYHYNVGKALAPLKDEGVLI 160 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~is~~~-~~~~~~~~~lG~aL~~~~d~~v~i 160 (264)
+++-.-++++.+.+.|||.+......+.| .|+.|-.+-.. ..|.+-+-.++. ..+|...-+--..|..+.+.|+.+
T Consensus 11 ~~~~~~~~a~~AE~~Gfd~~w~~eh~~~d--~~~~laa~a~~T~ri~lgt~v~~~~~~~P~~~A~~~atLd~lS~GR~~l 88 (325)
T TIGR03559 11 PPRNAVDLVAAAEKAGLDSVWVAEAYGFD--AVTPLGYLAARTSRVRLGTGVLQLYARTPTLTAMTAAGLDHLSGGRFIL 88 (325)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccC--HHHHHHHHHHhCCceeEEeeeecCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44455666777788899743333222222 33334333333 467776655553 347877777777777777777544
Q ss_pred -EEecCCccc
Q 042295 161 -IGSGSATHN 169 (264)
Q Consensus 161 -IaSG~lsH~ 169 (264)
||+|+....
T Consensus 89 GlG~g~~~~~ 98 (325)
T TIGR03559 89 GLGASGPQVV 98 (325)
T ss_pred EecCCCchhh
Confidence 676665553
No 104
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=22.87 E-value=84 Score=29.77 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=32.2
Q ss_pred CCCCCeeeeeCCCCCChHHHHHHHHHhc--cc--------ccCCeEEEEecCCc
Q 042295 124 EANIPVCQLSLQPEKDGTYHYNVGKALA--PL--------KDEGVLIIGSGSAT 167 (264)
Q Consensus 124 ~~diPVV~is~~~~~~~~~~~~lG~aL~--~~--------~d~~v~iIaSG~ls 167 (264)
+...++...+....++..+..+.++.|- ++ .+..|+|||.|||-
T Consensus 25 ~~l~~~~~~~~~~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLG 78 (427)
T KOG2017|consen 25 NRLEKVIDSSREAGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLG 78 (427)
T ss_pred cccccccccccccCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCC
Confidence 4455666666666788999999888742 22 35789999999983
No 105
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=22.78 E-value=3.5e+02 Score=20.59 Aligned_cols=76 Identities=17% Similarity=0.081 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC---CCh-HHHHHHHHHhcc--cccC
Q 042295 83 APDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE---KDG-TYHYNVGKALAP--LKDE 156 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~---~~~-~~~~~lG~aL~~--~~d~ 156 (264)
...+|+.|.+.+.+.|++ +....-...+. .-+ .+...|-+..+.. ..| .....+=+.|.+ +.++
T Consensus 12 T~~~A~~i~~~~~~~g~~-v~~~~~~~~~~------~~l---~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk 81 (140)
T TIGR01753 12 TEEMANIIAEGLKEAGAE-VDLLEVADADA------EDL---LSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGK 81 (140)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEEcccCCH------HHH---hcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCC
Confidence 346789999999888874 43211011110 001 1233444444432 233 455555555554 4678
Q ss_pred CeEEEEecCCcc
Q 042295 157 GVLIIGSGSATH 168 (264)
Q Consensus 157 ~v~iIaSG~lsH 168 (264)
+++++|||+.+.
T Consensus 82 ~~~vfgt~g~~~ 93 (140)
T TIGR01753 82 KVALFGSGDWGY 93 (140)
T ss_pred EEEEEecCCCCc
Confidence 899999998654
No 106
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=22.75 E-value=2.2e+02 Score=24.34 Aligned_cols=122 Identities=19% Similarity=0.231 Sum_probs=64.5
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccC--CCCC-eeeeeCCCCCChHHHHHHHHHh
Q 042295 74 YKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPE--ANIP-VCQLSLQPEKDGTYHYNVGKAL 150 (264)
Q Consensus 74 y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~--~diP-VV~is~~~~~~~~~~~~lG~aL 150 (264)
+.+-+-++||+++.+.|...+++.|+ ++....+..+ +. |.+|. ..-+ +|-||.+ +.+|.-..++-+.|
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~i-lvn~~d~~e~--~~-----f~~pa~~~~g~l~iaisT~-G~sP~la~~lr~~i 140 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGV-PVNVVDDPEL--CS-----FIFPSIVDRSPVVVAISSG-GAAPVLARLLRERI 140 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCC-EEEECCCccc--Ce-----EEEeeEEEcCCEEEEEECC-CCCcHHHHHHHHHH
Confidence 34556789999999999999999998 5643222221 11 33343 1223 4445555 57777777777666
Q ss_pred cccccCCe--EEEEecCCcccccccccCCCC---CcchHHHHHHHHHHHHHcCCHHHHhcc
Q 042295 151 APLKDEGV--LIIGSGSATHNLKALQFDGDS---VVSWASEFDCWLKDALLQGRYEDVNHY 206 (264)
Q Consensus 151 ~~~~d~~v--~iIaSG~lsH~l~~~~~~~~~---~~~~~~~FD~~~~~~l~~gd~~~l~~~ 206 (264)
.+.-.+.+ ++--.|.+-+.+.... +.. ..=|..-+|..+.+++.+|+.++..++
T Consensus 141 e~~l~~~~~~~~~~~~~~R~~~k~~~--~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~ 199 (205)
T TIGR01470 141 ETLLPPSLGDLATLAATWRDAVKKRL--PNGAARRRFWEKFFDGAFAERVLAGREEQAERV 199 (205)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHhccHHHHHHHcCCHHHHHHH
Confidence 66522111 1111111111111100 000 012344556667777888887766654
No 107
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=22.73 E-value=99 Score=20.49 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=23.9
Q ss_pred CCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 127 IPVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 127 iPVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
.|+|.|.+....|.++--+|.++|.+.
T Consensus 1 MP~i~i~~~~Grs~eqk~~l~~~it~~ 27 (61)
T PRK02220 1 MPYVHIKLIEGRTEEQLKALVKDVTAA 27 (61)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 489999988788999999999998885
No 108
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=22.55 E-value=1.7e+02 Score=25.74 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=38.1
Q ss_pred CCCHHHH-HHHHHHHHhCCCCcccccCC----CCCcceeEeeccccccCCCCCeeeeeCCCCCCh---HHHHH-HHHHhc
Q 042295 81 PGAPDLA-KRVKELLRTSGFNHVKEDTK----RGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDG---TYHYN-VGKALA 151 (264)
Q Consensus 81 ~g~~elA-~~i~~~l~~~gid~~~~~~~----~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~---~~~~~-lG~aL~ 151 (264)
||||+|- -+-++.|+++.+ +..... ..+.+...-+ ++.+ +..++.+..+...+. +.+|+ .-+.+.
T Consensus 13 PGdp~LlTlkA~~~L~~adv--i~~p~~~~~~~s~a~~i~~~--~~~~--~~~~~~l~fpm~~~~~~~~~~~~~~~~~i~ 86 (238)
T PRK05948 13 PGDPELITLKGLRLLQSAPV--VAFPAGLAGQPGLAEQIIAP--WLSP--QQIKLPLYFPYVQDEEQLEQAWQAAADQVW 86 (238)
T ss_pred CCChHHhHHHHHHHHhhCCE--EEEeCCCCCchhHHHHHHHH--HcCC--CcEEEEecCCccCChHHHHHHHHHHHHHHH
Confidence 7899984 556667776654 221111 1122211111 1111 233554444433332 22332 223333
Q ss_pred c-c-ccCCeEEEEecCCc
Q 042295 152 P-L-KDEGVLIIGSGSAT 167 (264)
Q Consensus 152 ~-~-~d~~v~iIaSG~ls 167 (264)
+ + ..++|+++.+|+.+
T Consensus 87 ~~~~~g~~v~~l~~GDp~ 104 (238)
T PRK05948 87 HYLEQGEDVAFACEGDVS 104 (238)
T ss_pred HHHHcCCeEEEEeCCChH
Confidence 3 2 35689999999974
No 109
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=22.45 E-value=2.8e+02 Score=24.72 Aligned_cols=51 Identities=33% Similarity=0.506 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCCc-ccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 85 DLAKRVKELLRTSGFNH-VKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 85 elA~~i~~~l~~~gid~-~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
+.|..+.+.|.+.|+.. +..+...|+ | ++|| +....+.++..++.++|++.
T Consensus 134 ~~A~~~r~~L~~lgL~~f~KTSG~kGl-H-V~vP----------------l~~~~~~~~~r~fa~~iA~~ 185 (245)
T TIGR02778 134 EAAQLIRELLDELGLESFVKTSGGKGL-H-VYVP----------------LRPTLSWDEVKDFAKALAQA 185 (245)
T ss_pred HHHHHHHHHHHHcCCccceEccCCCeE-E-EEEE----------------CCCCCCHHHHHHHHHHHHHH
Confidence 46677778888888842 123566776 6 5566 34457888889999998886
No 110
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=22.42 E-value=1.2e+02 Score=29.25 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeC
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSL 134 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~ 134 (264)
.+++.+|++.|+++|+|.+-....=|.=|=+-.-+..-...+.||||+|..
T Consensus 322 ~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 322 KQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 477889999999999984332223343332211122222346799998875
No 111
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=22.18 E-value=1.1e+02 Score=23.06 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHhCCCCcccc--c--CCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCC
Q 042295 82 GAPDLAKRVKELLRTSGFNHVKE--D--TKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEG 157 (264)
Q Consensus 82 g~~elA~~i~~~l~~~gid~~~~--~--~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~ 157 (264)
++..+.+.|++.+++.|+. -+. . ..+| .||.+-.-.++.-..+.||+-..+. +.++.-++=..|+++-..+
T Consensus 17 ~g~~l~~~ll~~~~~~gi~-GaTV~rgi~G~G-~~~~ih~~~~~~l~~~lPvvIe~id---~~eki~~~l~~l~~~~~~g 91 (101)
T PF02641_consen 17 GGKPLYEWLLERAREAGIA-GATVFRGIEGFG-SSGRIHSARLLELSDDLPVVIEFID---TEEKIEAFLPELKELVKDG 91 (101)
T ss_dssp TTEEHHHHHHHHHHHTT-S-EEEEEE-SEEEE--------------TTS-EEEEEEEE---EHHHHHHHHHHHCTT-SSS
T ss_pred CceEHHHHHHHHHHHCCCC-eEEEEcceeeeC-CCCcccccchhhhcCCCCEEEEEEc---CHHHHHHHHHHHHHHcCCC
Confidence 3556899999999999984 221 1 2232 3444555555544568998877765 6677777777788776555
Q ss_pred eEE
Q 042295 158 VLI 160 (264)
Q Consensus 158 v~i 160 (264)
.++
T Consensus 92 lit 94 (101)
T PF02641_consen 92 LIT 94 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 112
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=22.13 E-value=1.2e+02 Score=28.71 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcCCCCEEEEE-cCCCC
Q 042295 22 RHFLKAWKEQVFLQKPNSILVI-SAHWE 48 (264)
Q Consensus 22 ~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~ 48 (264)
.+.++++.+.+.+.+||++|.| +|.+.
T Consensus 68 ~~~~~~~~~~~~~~~pd~vIlID~pgFN 95 (373)
T PF02684_consen 68 KRLFRKLVERIKEEKPDVVILIDYPGFN 95 (373)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcc
Confidence 4555566676678899999999 77654
No 113
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=22.00 E-value=82 Score=23.73 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccccC
Q 042295 79 PAPGAPDLAKRVKELLRTSGFNHVKEDT 106 (264)
Q Consensus 79 ~~~g~~elA~~i~~~l~~~gid~~~~~~ 106 (264)
-+.|.-++|++|++.+++.|+ |+..++
T Consensus 26 vA~G~G~iAe~II~~Ake~~V-pi~edp 52 (92)
T COG2257 26 VASGKGEIAEKIIEKAKEHGV-PIQEDP 52 (92)
T ss_pred EeecchHHHHHHHHHHHHcCC-CcccCH
Confidence 468999999999999999999 777653
No 114
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=21.81 E-value=74 Score=25.30 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.5
Q ss_pred HHHHHHHhcccccCCeEEEEecCC
Q 042295 143 HYNVGKALAPLKDEGVLIIGSGSA 166 (264)
Q Consensus 143 ~~~lG~aL~~~~d~~v~iIaSG~l 166 (264)
--+|.+.|+.+.+--|+|||||.-
T Consensus 57 ~e~f~~vl~~a~~~EilliGTG~~ 80 (127)
T COG3737 57 PEDFERVLAEAPDVEILLIGTGAR 80 (127)
T ss_pred HHHHHHHHhcCCCceEEEEecCcc
Confidence 356888899998888999999985
No 115
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=21.77 E-value=24 Score=27.02 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=12.9
Q ss_pred CeEEEEecCCccccc
Q 042295 157 GVLIIGSGSATHNLK 171 (264)
Q Consensus 157 ~v~iIaSG~lsH~l~ 171 (264)
||+|||||+=-|-+.
T Consensus 2 kVLviGsGgREHAia 16 (100)
T PF02844_consen 2 KVLVIGSGGREHAIA 16 (100)
T ss_dssp EEEEEESSHHHHHHH
T ss_pred EEEEECCCHHHHHHH
Confidence 699999999888773
No 116
>PRK02399 hypothetical protein; Provisional
Probab=21.71 E-value=1.6e+02 Score=28.29 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHhccc----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHc
Q 042295 139 DGTYHYNVGKALAPL----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQ 197 (264)
Q Consensus 139 ~~~~~~~lG~aL~~~----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~ 197 (264)
+++++.++|+.|++- ...-.++|=.||+|++=.+.+ . =|.++-|+.+.+.|++
T Consensus 314 t~eE~~~~g~~ia~kLn~a~gpv~vllP~~G~S~~D~~G~----~--f~Dpead~alf~~l~~ 370 (406)
T PRK02399 314 TPEENRQIGRWIAEKLNRAKGPVAFLIPLGGVSALDRPGQ----P--FHDPEADAAFFDALEE 370 (406)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCccccCCCC----C--ccChhHHHHHHHHHHH
Confidence 789999999998873 244568899999999754332 1 1446667777777765
No 117
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.62 E-value=1.1e+02 Score=20.40 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=24.1
Q ss_pred CCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 127 IPVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 127 iPVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
.|+|.|.+....|.++--+|.++|.++
T Consensus 1 MP~i~I~~~~grs~eqk~~l~~~it~~ 27 (62)
T PRK00745 1 MPTFHIELFEGRTVEQKRKLVEEITRV 27 (62)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 489999998788999999999999885
No 118
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=21.45 E-value=1.2e+02 Score=26.61 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=19.2
Q ss_pred HHHHHHH-HHHhhcCCCCEEEEEcCCCCCC
Q 042295 22 RHFLKAW-KEQVFLQKPNSILVISAHWETD 50 (264)
Q Consensus 22 ~~~l~~l-~~~l~~~~Pd~IVviS~Hw~~~ 50 (264)
.+.+++. .+.+++.++|+||+++ ||-..
T Consensus 156 ~~~~~~~~v~~l~~~~~D~iIvl~-H~G~~ 184 (257)
T cd07408 156 IEEAKKVIVAALKAKGADVIVALG-HLGVD 184 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEe-CcCcC
Confidence 3445555 5566677899999887 98543
No 119
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=21.20 E-value=70 Score=25.63 Aligned_cols=58 Identities=22% Similarity=0.397 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCccc
Q 042295 24 FLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVK 103 (264)
Q Consensus 24 ~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~ 103 (264)
-|+-+=+.+++...|+++||-| -+.-+|||-|++.+.++ +..+.|...+++.|+ .+.
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~P-------------vNg~wydytG~~~~~r~---------~~y~kI~~~~~~~gf-~v~ 93 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQP-------------VNGKWYDYTGLSKEMRQ---------EYYKKIKYQLKSQGF-NVA 93 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-----------------HHHHHHTT--HHHHH---------HHHHHHHHHHHTTT---EE
T ss_pred HHHHHHHHHHHcCCceEEEecC-------------CcHHHHHHhCCCHHHHH---------HHHHHHHHHHHHCCC-EEE
Confidence 3455555566778899988864 23468999999987654 567999999999999 465
Q ss_pred c
Q 042295 104 E 104 (264)
Q Consensus 104 ~ 104 (264)
.
T Consensus 94 D 94 (130)
T PF04914_consen 94 D 94 (130)
T ss_dssp E
T ss_pred e
Confidence 3
No 120
>PRK10637 cysG siroheme synthase; Provisional
Probab=21.14 E-value=4.2e+02 Score=25.59 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=44.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccC--CCCC-eeeeeCCCCCChHHHHHHHHHhcc
Q 042295 76 LKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPE--ANIP-VCQLSLQPEKDGTYHYNVGKALAP 152 (264)
Q Consensus 76 ~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~--~diP-VV~is~~~~~~~~~~~~lG~aL~~ 152 (264)
+-+-+.+|+++.++|.+.+++.|+ .+........ + .|.+|. ..-+ +|-||.+ ..+|.-..++-+.|.+
T Consensus 75 lv~~at~d~~~n~~i~~~a~~~~~-lvN~~d~~~~--~-----~f~~pa~~~~g~l~iaisT~-G~sP~~a~~lr~~ie~ 145 (457)
T PRK10637 75 LAIAATDDDAVNQRVSEAAEARRI-FCNVVDAPKA--A-----SFIMPSIIDRSPLMVAVSSG-GTSPVLARLLREKLES 145 (457)
T ss_pred EEEECCCCHHHhHHHHHHHHHcCc-EEEECCCccc--C-----eEEEeeEEecCCEEEEEECC-CCCcHHHHHHHHHHHH
Confidence 456788999999999999999998 4543222221 1 134443 2233 5556665 6788777777766666
Q ss_pred c
Q 042295 153 L 153 (264)
Q Consensus 153 ~ 153 (264)
+
T Consensus 146 ~ 146 (457)
T PRK10637 146 L 146 (457)
T ss_pred h
Confidence 5
No 121
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=21.01 E-value=1.3e+02 Score=30.53 Aligned_cols=28 Identities=7% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEE-cCCCC
Q 042295 21 VRHFLKAWKEQVFLQKPNSILVI-SAHWE 48 (264)
Q Consensus 21 ~~~~l~~l~~~l~~~~Pd~IVvi-S~Hw~ 48 (264)
..+.++++.+.+.+.+||++|.| +|.+.
T Consensus 295 l~~~~~~l~~~i~~~kPD~vIlID~PgFN 323 (608)
T PRK01021 295 LWYRYRKLYKTILKTNPRTVICIDFPDFH 323 (608)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 34556666777778899999999 77654
No 122
>PRK06756 flavodoxin; Provisional
Probab=20.95 E-value=3.7e+02 Score=21.10 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC---CChHHHHHHHHHhcc--cccCCe
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE---KDGTYHYNVGKALAP--LKDEGV 158 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~---~~~~~~~~lG~aL~~--~~d~~v 158 (264)
..+|+.|.+.+++.|++ +....-... +. ..-+ .+.-.|-+..+.. .-|.....+=+.|.. ++++.+
T Consensus 16 e~vA~~ia~~l~~~g~~-v~~~~~~~~-~~----~~~~---~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~ 86 (148)
T PRK06756 16 EEMADHIAGVIRETENE-IEVIDIMDS-PE----ASIL---EQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKA 86 (148)
T ss_pred HHHHHHHHHHHhhcCCe-EEEeehhcc-CC----HHHH---hcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEE
Confidence 45789999999888873 432110000 00 0111 1233444444432 234556666666653 468899
Q ss_pred EEEEecCCc
Q 042295 159 LIIGSGSAT 167 (264)
Q Consensus 159 ~iIaSG~ls 167 (264)
+++|||+.+
T Consensus 87 ~~fgt~~~~ 95 (148)
T PRK06756 87 AVFGSCDSA 95 (148)
T ss_pred EEEeCCCCc
Confidence 999999863
No 123
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=20.90 E-value=1.2e+02 Score=19.96 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=14.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcC
Q 042295 25 LKAWKEQVFLQKPNSILVISA 45 (264)
Q Consensus 25 l~~l~~~l~~~~Pd~IVviS~ 45 (264)
+.++.+.+++..|++.|+++.
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~~ 49 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVSD 49 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE--
T ss_pred HHHHHHHHHHhCCCEEEEEEc
Confidence 557777788899999999865
No 124
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=20.90 E-value=1.2e+02 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCCCC
Q 042295 22 RHFLKAWKEQVFLQKPNSILVISAHWET 49 (264)
Q Consensus 22 ~~~l~~l~~~l~~~~Pd~IVviS~Hw~~ 49 (264)
.+.++++.+++++.++|.||+++ |+-.
T Consensus 177 ~e~~~~~v~~lr~~~~D~IIvL~-H~G~ 203 (288)
T cd07412 177 VEAINAVAPELKAGGVDAIVVLA-HEGG 203 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEe-CCCC
Confidence 45667777777767899999987 8643
No 125
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=20.89 E-value=5.5e+02 Score=22.15 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCe---EEEecCCCccCCCCCC-ccccccccCCCCCCHH----H-HHHHHH
Q 042295 22 RHFLKAWKEQVFLQKPNSILVISAHWETDVPT---VNVVRQNDTIYDFYGF-PEQLYKLKYPAPGAPD----L-AKRVKE 92 (264)
Q Consensus 22 ~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~---i~~~~~~~~~~D~~gf-P~~~y~~~y~~~g~~e----l-A~~i~~ 92 (264)
.++.+.+.+.+.+.+||+||.+.=+--....+ +.++...-.+-|..|. |... .+.-...|... | .+++++
T Consensus 47 ~~~~~~l~~~~~~~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~-~i~~~~~gp~~y~stLpv~~l~~ 125 (211)
T PRK13196 47 RAAMAALSRLLDELQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDT-PVCTEPDAPAAYLSTLPLRAILA 125 (211)
T ss_pred hHHHHHHHHHHHHhCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCC-CcccCCCCccceecCCCHHHHHH
Confidence 34445555556678999999986553222222 2333222223444443 2110 11000111111 1 477888
Q ss_pred HHHhCCCCccccc
Q 042295 93 LLRTSGFNHVKED 105 (264)
Q Consensus 93 ~l~~~gid~~~~~ 105 (264)
.+++.|+ ++..+
T Consensus 126 ~l~~~gi-p~~iS 137 (211)
T PRK13196 126 AWHDAGI-PGHIS 137 (211)
T ss_pred HHHhcCC-CceEc
Confidence 8888898 56544
No 126
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=20.86 E-value=5.2e+02 Score=24.17 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccCC-CCCcceeEeeccccccCCCCCeeeeeCCCCC--------ChHHHHHHHHHh
Q 042295 80 APGAPDLAKRVKELLRTSGFNHVKEDTK-RGLDHGAWTPLMLMYPEANIPVCQLSLQPEK--------DGTYHYNVGKAL 150 (264)
Q Consensus 80 ~~g~~elA~~i~~~l~~~gid~~~~~~~-~~lDHG~~vPL~~l~p~~diPVV~is~~~~~--------~~~~~~~lG~aL 150 (264)
...++.|.+.|.+.+++.+| +.+.... -|-|=++ .+ +-...+|.+.||+++.+ +.++..+..+.|
T Consensus 261 ~i~~~~l~~~l~~~A~~~~I-~~Q~~~~~gGtDa~~---~~--~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~Ll 334 (350)
T TIGR03107 261 HIMLPRMKDFLLTTAEEAGI-KYQYYVAKGGTDAGA---AH--LKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAAQAFL 334 (350)
T ss_pred CCCCHHHHHHHHHHHHHcCC-CcEEecCCCCchHHH---HH--HhCCCCcEEEEccCcccccChhheeeHHHHHHHHHHH
Confidence 45699999999999999999 5654211 2444443 11 12358999999998653 345555555555
Q ss_pred ccc
Q 042295 151 APL 153 (264)
Q Consensus 151 ~~~ 153 (264)
.++
T Consensus 335 ~~~ 337 (350)
T TIGR03107 335 QAI 337 (350)
T ss_pred HHH
Confidence 553
No 127
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=20.58 E-value=3.1e+02 Score=21.41 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccC-CCCCeeeeeCCC---CCChHHHHHHHHHhcccccCCeE
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPE-ANIPVCQLSLQP---EKDGTYHYNVGKALAPLKDEGVL 159 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~-~diPVV~is~~~---~~~~~~~~~lG~aL~~~~d~~v~ 159 (264)
..+|+.|.+.+...|++ +....... |... ...+ .+.-+|-+..++ ...|.....+=+.|.. ..++++
T Consensus 15 e~iA~~ia~~l~~~g~~-v~~~~~~~-~~~~------~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~-~~k~~a 85 (140)
T TIGR01754 15 EEVAFMIQDYLQKDGHE-VDILHRIG-TLAD------APLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY-KPSNVA 85 (140)
T ss_pred HHHHHHHHHHHhhCCee-EEeccccc-cccc------CcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc-cCCEEE
Confidence 45789999999888873 42100000 0000 0001 133445555442 2334556666555543 568999
Q ss_pred EEEecCC
Q 042295 160 IIGSGSA 166 (264)
Q Consensus 160 iIaSG~l 166 (264)
++|||+.
T Consensus 86 vfgtgd~ 92 (140)
T TIGR01754 86 IFGTGET 92 (140)
T ss_pred EEEcCCC
Confidence 9999975
No 128
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=20.50 E-value=2.4e+02 Score=26.48 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccc---cccC-CCCCeeeeeCCCCCChHHHHHHHHHhcccccCC
Q 042295 82 GAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLML---MYPE-ANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEG 157 (264)
Q Consensus 82 g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~---l~p~-~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~ 157 (264)
.+.+...++++.+.+.|||.+.... +++..-|+.+ +-.. ..|.+.....+...+|....+--..|..+.+.|
T Consensus 25 ~~~~~~~~~a~~AE~~Gfd~~~~~~----~~~~~dp~~~laalAa~T~ri~l~~av~p~~~~P~~~A~~~AtLD~lS~GR 100 (378)
T PRK00719 25 VDHGYLQQIAQAADRLGYTGVLIPT----GRSCEDAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLDRLSNGR 100 (378)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC----CCCCCCHHHHHHHHHHHcCeeEEEEEEeCCCcCHHHHHHHHHHHHHHcCCC
Confidence 3677888899999999997322211 1122223222 2222 456665544443568888888888888887777
Q ss_pred eEE-EEecCCccccc
Q 042295 158 VLI-IGSGSATHNLK 171 (264)
Q Consensus 158 v~i-IaSG~lsH~l~ 171 (264)
+.+ ||+|...+.+.
T Consensus 101 ~~lgig~G~~~~e~~ 115 (378)
T PRK00719 101 LLINLVTGGDPAELA 115 (378)
T ss_pred EEEEEecCCCHHHHH
Confidence 665 88887765543
No 129
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=20.49 E-value=1.9e+02 Score=19.16 Aligned_cols=26 Identities=4% Similarity=0.123 Sum_probs=23.0
Q ss_pred CeeeeeCC-CCCChHHHHHHHHHhccc
Q 042295 128 PVCQLSLQ-PEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 128 PVV~is~~-~~~~~~~~~~lG~aL~~~ 153 (264)
|+|.|.+. ...|.++--+|.++|.++
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~ 27 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEA 27 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999998 678999999999998886
No 130
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=20.02 E-value=1.2e+02 Score=23.67 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=19.1
Q ss_pred EEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCC
Q 042295 4 FFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAH 46 (264)
Q Consensus 4 ~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~H 46 (264)
+++.|+-|..............+.+.+.+.+.+|+ ++++.|
T Consensus 59 Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~~~~--~vl~GH 99 (129)
T cd07403 59 ILLTHAPPAGIGDGEDFAHRGFEAFLDFIDRFRPK--LFIHGH 99 (129)
T ss_pred EEEECCCCCcCcCcccccccCHHHHHHHHHHHCCc--EEEEcC
Confidence 68899865432211111111223333444445666 566776
Done!