Query 042295
Match_columns 264
No_of_seqs 145 out of 1238
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 07:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pw6_A Uncharacterized protein 100.0 1.4E-74 4.8E-79 517.5 15.7 253 1-259 15-271 (271)
2 3vsj_B 2-amino-5-chlorophenol 100.0 3.7E-47 1.2E-51 346.5 13.7 235 19-259 35-290 (312)
3 1b4u_B LIGA, LIGB, protocatech 100.0 3.6E-46 1.2E-50 338.6 14.0 222 3-241 7-260 (302)
4 3vsj_A 2-amino-5-chlorophenol 100.0 8.9E-46 3E-50 331.1 15.9 235 3-244 6-256 (271)
5 3bcz_A Protein MEMO1; alpha/be 99.7 5.5E-18 1.9E-22 152.8 8.3 177 34-234 64-253 (293)
6 2gfq_A UPF0204 protein PH0006; 80.1 8.2 0.00028 34.1 8.9 115 35-170 91-223 (298)
7 1yqe_A Hypothetical UPF0204 pr 79.9 19 0.00065 31.5 11.2 115 36-170 70-200 (282)
8 2q7s_A N-formylglutamate amido 62.7 2.7 9.3E-05 37.0 1.6 73 77-153 198-278 (290)
9 2q5c_A NTRC family transcripti 57.1 8.9 0.0003 31.4 3.7 70 85-171 39-110 (196)
10 2pju_A Propionate catabolism o 53.3 14 0.00047 31.1 4.4 45 120-171 76-122 (225)
11 2xws_A Sirohydrochlorin cobalt 47.4 19 0.00066 26.8 4.0 30 2-37 5-34 (133)
12 2odf_A AGR_C_3887P, hypothetic 45.7 7.6 0.00026 33.4 1.6 70 82-153 175-247 (257)
13 1o51_A Hypothetical protein TM 41.1 77 0.0026 23.6 6.4 75 84-161 29-105 (114)
14 1bvy_F Protein (cytochrome P45 38.4 58 0.002 26.2 5.8 74 84-168 36-116 (191)
15 3m20_A 4-oxalocrotonate tautom 37.9 42 0.0014 21.6 4.0 25 128-153 1-25 (62)
16 1tjn_A Sirohydrochlorin cobalt 35.5 32 0.0011 26.8 3.6 30 2-37 26-55 (156)
17 3giu_A Pyrrolidone-carboxylate 34.6 1.9E+02 0.0065 23.9 8.5 27 22-48 48-74 (215)
18 3ro0_A Pyrrolidone-carboxylate 32.5 2.2E+02 0.0074 23.7 8.8 78 24-106 50-137 (223)
19 1a2z_A Pyrrolidone carboxyl pe 32.2 1.6E+02 0.0055 24.4 7.7 28 23-50 48-75 (220)
20 3lyh_A Cobalamin (vitamin B12) 31.7 53 0.0018 24.2 4.2 26 3-34 8-33 (126)
21 4dik_A Flavoprotein; TM0755, e 31.7 1.4E+02 0.0047 27.1 7.8 76 85-167 281-364 (410)
22 2ebj_A Pyrrolidone carboxyl pe 31.2 2.1E+02 0.0071 23.1 8.4 76 23-106 44-132 (192)
23 1iu8_A Pyrrolidone-carboxylate 31.2 1.7E+02 0.006 23.9 7.7 27 23-49 44-70 (206)
24 3egc_A Putative ribose operon 30.5 1.1E+02 0.0037 25.1 6.5 78 81-163 47-133 (291)
25 3lac_A Pyrrolidone-carboxylate 30.3 2E+02 0.007 23.6 8.0 26 24-49 49-74 (215)
26 3f6r_A Flavodoxin; FMN binding 29.0 1.7E+02 0.0059 21.5 8.1 76 84-168 16-98 (148)
27 2dcl_A Hypothetical UPF0166 pr 28.4 84 0.0029 23.9 4.8 76 83-162 24-102 (127)
28 1x10_A Pyrrolidone-carboxylate 27.4 2E+02 0.0068 23.5 7.4 27 23-49 47-73 (208)
29 3jy6_A Transcriptional regulat 27.0 1.1E+02 0.0036 25.0 5.8 78 82-165 47-133 (276)
30 3he8_A Ribose-5-phosphate isom 26.9 71 0.0024 25.1 4.2 54 85-164 13-68 (149)
31 4hwg_A UDP-N-acetylglucosamine 26.6 54 0.0018 29.4 4.0 27 19-45 77-103 (385)
32 4hps_A Pyrrolidone-carboxylate 25.4 1.8E+02 0.0063 24.2 6.9 27 23-49 70-96 (228)
33 1uta_A FTSN, MSGA, cell divisi 24.9 62 0.0021 22.0 3.3 72 74-165 10-81 (81)
34 4gxh_A Pyrrolidone-carboxylate 24.0 3E+02 0.01 22.6 8.0 24 23-46 49-72 (216)
35 3ph3_A Ribose-5-phosphate isom 23.3 89 0.003 25.1 4.2 54 85-164 33-88 (169)
36 3bma_A D-alanyl-lipoteichoic a 23.1 43 0.0015 30.8 2.6 25 24-50 89-113 (407)
37 3o74_A Fructose transport syst 23.1 1.7E+02 0.0057 23.5 6.2 40 124-163 80-128 (272)
38 1pjq_A CYSG, siroheme synthase 22.6 1.4E+02 0.0046 27.5 6.1 68 76-152 75-145 (457)
39 3tb6_A Arabinose metabolism tr 22.4 1.2E+02 0.0042 24.7 5.3 81 80-163 53-145 (298)
40 2xwp_A Sirohydrochlorin cobalt 22.4 77 0.0026 26.7 4.0 33 2-40 4-37 (264)
41 3qe2_A CPR, P450R, NADPH--cyto 22.3 91 0.0031 30.0 4.9 80 84-168 33-119 (618)
42 3huu_A Transcription regulator 21.6 1.7E+02 0.0058 24.2 6.1 80 80-164 65-153 (305)
43 4em8_A Ribose 5-phosphate isom 21.3 48 0.0016 26.1 2.2 55 85-164 20-74 (148)
44 1ccw_A Protein (glutamate muta 21.3 1.8E+02 0.0063 21.7 5.7 71 88-166 21-94 (137)
45 3hs3_A Ribose operon repressor 21.3 2.3E+02 0.0078 23.0 6.8 74 79-163 48-130 (277)
46 5nul_A Flavodoxin; electron tr 21.2 2.4E+02 0.0081 20.4 6.8 74 84-167 13-91 (138)
47 3k4h_A Putative transcriptiona 20.9 2.1E+02 0.0071 23.2 6.5 80 80-164 51-140 (292)
No 1
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=100.00 E-value=1.4e-74 Score=517.53 Aligned_cols=253 Identities=34% Similarity=0.654 Sum_probs=222.7
Q ss_pred CcEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEecCCCccCCCCCCccccccccCCC
Q 042295 1 METFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPA 80 (264)
Q Consensus 1 ~p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~ 80 (264)
||++|||||+|++.+++ +++.++|+++++++. +||+|||||+||++..++|+++++++++|||+|||+++|+++|++
T Consensus 15 ~P~~flsHGsP~~~~~~-~~~~~~l~~l~~~l~--~P~aIvviSaHw~~~~~~V~~~~~~~~i~Df~gfp~~ly~~~y~~ 91 (271)
T 2pw6_A 15 MPALFLGHGSPMNVLED-NLYTRSWQKLGMTLP--RPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPA 91 (271)
T ss_dssp CCEEEEECC-CCCCSSC-CHHHHHHHHHHHHSC--CCSEEEEEEEEEEESSEEEECCCC-------------CCSCCCCC
T ss_pred CCEEEECCCCCccCCCc-hHHHHHHHHHHHhCC--CCCEEEEEcCCCCCCceEEEeCCCCCCcCCcCcCCCcCcccccCC
Confidence 79999999999999954 689999999999984 999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEE
Q 042295 81 PGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLI 160 (264)
Q Consensus 81 ~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~i 160 (264)
+|+|+||++|++.|.++||+ +.. .++++|||+||||++|||++|+||||||+|...++++||+||++|+++||+||+|
T Consensus 92 ~g~peLA~~i~~~l~~~g~~-~~~-~~~glDHG~~vPL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd~~VlI 169 (271)
T 2pw6_A 92 PGSPALAQRLVELLAPIPVT-LDK-EAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML 169 (271)
T ss_dssp CBCHHHHHHHHHHHTTSCEE-EES-SCCCCCHHHHHHHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGGGTEEE
T ss_pred CCCHHHHHHHHHHHHhcCCc-ccc-cccCCCcchhhhHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCcEE
Confidence 99999999999999999995 554 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccccccccC-CCCCcchHHHHHHHHHHHHH-cC--CHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCCC
Q 042295 161 IGSGSATHNLKALQFD-GDSVVSWASEFDCWLKDALL-QG--RYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGED 236 (264)
Q Consensus 161 IaSG~lsH~l~~~~~~-~~~~~~~~~~FD~~~~~~l~-~g--d~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~~ 236 (264)
||||++||||+..+++ +.+..+|+++||+|++++|+ +| |.++|++|.. .|.++.+||+.|||+|+++++||++++
T Consensus 170 igSG~lsHnL~~~~~~~~~~~~~~~~eFD~~~~~~l~~~g~~d~~~L~~~~~-~~~a~~a~p~~eh~~pl~~alGa~~~~ 248 (271)
T 2pw6_A 170 VASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLD-HEGGTLSNPTPEHYLPLLYVLGAWDGQ 248 (271)
T ss_dssp EEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCCSCGGGCTTTSGGG-STTHHHHCSSSTTTHHHHHHHHTCCSS
T ss_pred EEeCccccCCCcccccCcCCCCchHHHHHHHHHHHHHhcCCcCHHHHhCccc-ChhHHHhCCchHhHHHHHHHHhCCCCC
Confidence 9999999999988763 23566899999999999999 99 9999999964 499999999999999999999999877
Q ss_pred CceeEeccceeccceeeeEEEec
Q 042295 237 AKAEQIHQSWQLCSLSCSSYKFT 259 (264)
Q Consensus 237 ~~~~~~~~~~~~~~~s~~~~~~~ 259 (264)
.+.++++++|.+||+||+||+|+
T Consensus 249 ~~~~~~~~~~~~g~l~~~~~~~~ 271 (271)
T 2pw6_A 249 EPITIPVEGIEMGSLSMLSVQIG 271 (271)
T ss_dssp SCEECSCCCEETTTEECCCEEEC
T ss_pred CCeEEEecceeeccceEEEEEEC
Confidence 77888999999999999999995
No 2
>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*
Probab=100.00 E-value=3.7e-47 Score=346.48 Aligned_cols=235 Identities=18% Similarity=0.145 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEec-CCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhC
Q 042295 19 LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVR-QNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTS 97 (264)
Q Consensus 19 ~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~-~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~ 97 (264)
+++.++|+++++++.+.+||+|||||+||.+....+.+.. ....+||+++||+. |+++|+++||++||++|++.+.+.
T Consensus 35 ~~~~~~~~~~~~~l~~~~PdaIvviS~Hw~~~~~~~~~~~~~~~~~~~~~~f~~f-~~~~y~~~gd~eLA~~i~~~l~~~ 113 (312)
T 3vsj_B 35 EVLRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGKSVDPIFPNV-FRYDFSLNVDVELAEACAEEGRKA 113 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEEEEEEEESSSEEEECCSEEEEEEECSSCTTT-CEEEEEEEBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEcCCCCccCCeEEeccCCCCccccccCCCcc-CcccCCCCCCHHHHHHHHHHHHHc
Confidence 5789999999999988899999999999999887766632 22346777777743 689999999999999999999999
Q ss_pred CCCcccc--cCCCCCcceeEeeccccccCCCCCeeeeeCCC---CCChH----HHHHHHHHhccc---ccCCeEEEEecC
Q 042295 98 GFNHVKE--DTKRGLDHGAWTPLMLMYPEANIPVCQLSLQP---EKDGT----YHYNVGKALAPL---KDEGVLIIGSGS 165 (264)
Q Consensus 98 gid~~~~--~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~---~~~~~----~~~~lG~aL~~~---~d~~v~iIaSG~ 165 (264)
||| +.. +.++++|||+||||++|+|+.++||||||++. ..+++ +|++||++|+++ +|+||+|||||+
T Consensus 114 g~~-~~~~~~~~~~lDHG~~vpL~~l~p~~~~pVVpis~~~~p~~~~~~~~~~~~~~lG~aL~~~~~~~d~~Vlii~SG~ 192 (312)
T 3vsj_B 114 GLV-TKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISANNSPYYLNTKEGMSEMDVLGKATREAIRKTGRKAVLLASNT 192 (312)
T ss_dssp TCC-EEEECCTTCCCCHHHHHHHHHHCTTCCSCEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCc-eeeccCccccCCcchHhHHHHhCCCCCCCEEEEeecCCCCCCChhhhHHHHHHHHHHHHHHHHhcCCCEEEEEECc
Confidence 996 643 67899999999999999999999999999985 48888 999999999997 389999999999
Q ss_pred CcccccccccCC-------CCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccCC-CC
Q 042295 166 ATHNLKALQFDG-------DSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAGE-DA 237 (264)
Q Consensus 166 lsH~l~~~~~~~-------~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~~-~~ 237 (264)
+|||+...++.. .++.+|+++||+|++++|+++|.++|+++..+ ..+.+++ +|++.++.+++||++. ..
T Consensus 193 lsH~l~~~~~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~gD~~~L~~~~~e--~~~~a~g-~cG~~~~~~l~gAl~~~~~ 269 (312)
T 3vsj_B 193 LSHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGKTSEVFKLLPQ--FIDEAFA-EVKSGAFTWMHAAMQYPEL 269 (312)
T ss_dssp SCCCCCCSCCSSTTCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH--HHHHHTC-GGGGSHHHHHHHHTTCCCC
T ss_pred ccccCCcccccccccccccCCCCHHHHHHHHHHHHHHHcCCHHHHHhCCHH--HHHHhcc-ccCHHHHHHHHHHhcCCCC
Confidence 999998643210 23468999999999999999999999999643 2233444 7999999999999875 34
Q ss_pred ceeEeccceeccceeeeEEEec
Q 042295 238 KAEQIHQSWQLCSLSCSSYKFT 259 (264)
Q Consensus 238 ~~~~~~~~~~~~~~s~~~~~~~ 259 (264)
+++++.+.-.+| .++.+-.|.
T Consensus 270 ~~~ll~Y~~s~g-vGy~~~~~~ 290 (312)
T 3vsj_B 270 AAELFGYGTVIG-TGNAVMEWD 290 (312)
T ss_dssp CCEEEEEEEETT-EEEEEEEEE
T ss_pred cceEEeeECCcc-ceEEEEEEE
Confidence 577765544444 555555554
No 3
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=100.00 E-value=3.6e-46 Score=338.58 Aligned_cols=222 Identities=18% Similarity=0.203 Sum_probs=184.6
Q ss_pred EEEEcCCCCCCCCC-------CC---hHHHHHHHHHHHHhhc--CCCCEEEEEcC-CCCCC-C-----CeEEEecCCCcc
Q 042295 3 TFFISHGSPTLPID-------ES---LQVRHFLKAWKEQVFL--QKPNSILVISA-HWETD-V-----PTVNVVRQNDTI 63 (264)
Q Consensus 3 ~~fisHG~P~~~~~-------~~---~~~~~~l~~l~~~l~~--~~Pd~IVviS~-Hw~~~-~-----~~i~~~~~~~~~ 63 (264)
.+.+|| ||+++. +. .++.++++++++++++ .+||+|||||| ||... . .+|+..+.++ +
T Consensus 7 ~~~~sH--~P~i~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~~H~~~~~~~~~~~~~I~~~~~~~-~ 83 (302)
T 1b4u_B 7 GITSSH--IPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETFK-P 83 (302)
T ss_dssp EEEECC--CHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSSEEC-B
T ss_pred EeECCC--CCcccCccccCCcchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccccccccCCceEEecCCCCc-c
Confidence 467899 665541 11 4788999999999987 89999999999 55332 2 3455565566 7
Q ss_pred CCCCCCccccccccC-CCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCC---CCeeeeeCCCCCC
Q 042295 64 YDFYGFPEQLYKLKY-PAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEAN---IPVCQLSLQPEKD 139 (264)
Q Consensus 64 ~D~~gfP~~~y~~~y-~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~d---iPVV~is~~~~~~ 139 (264)
|||+++| ++| +++||++||++|++.+.+.|+| +..+.++++|||+||||.+|+|+.| +||||||++...+
T Consensus 84 ~d~~~G~-----~~~~~~~G~peLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpisv~~~~~ 157 (302)
T 1b4u_B 84 ADEGWGP-----RPVPDVKGHPDLAWHIAQSLILDEFD-MTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTY 157 (302)
T ss_dssp CBCSSSB-----CSSCCEECCHHHHHHHHHHHHHTTCC-CEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCSSS
T ss_pred CcccCCC-----cCCCCCCCCHHHHHHHHHHHHhcCCC-eeccCCcCCCceeeehHHHhcCcccCCcCcEEEEeecCCCC
Confidence 9986555 357 8999999999999999999996 6666779999999999999999987 9999999997664
Q ss_pred ----hHHHHHHHHHhccc-----ccCCeEEEEecCCcccccccccCCCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhC
Q 042295 140 ----GTYHYNVGKALAPL-----KDEGVLIIGSGSATHNLKALQFDGDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKA 210 (264)
Q Consensus 140 ----~~~~~~lG~aL~~~-----~d~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~ 210 (264)
+++||+||++|+++ +|+||+|||||++|||+...+++ .|+++||+|++++| ++|.++|+++. +.
T Consensus 158 p~~~~~~~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~~~g-----~~~~~fD~~~~~~l-~~d~~~L~~~~-~~ 230 (302)
T 1b4u_B 158 PPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAG-----LINKEFDLNFIDKL-ISDPEELSKMP-HI 230 (302)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTTT-----BCCHHHHHHHHHHH-HHCHHHHTTCC-HH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCcCc-----cchHHHHHHHHHHH-ccCHHHHHhcc-cc
Confidence 59999999999987 57899999999999999875432 57899999999999 99999999995 35
Q ss_pred CcchhcCCCCcchHHHHHHhcccCCCCceeE
Q 042295 211 PYGKMAHPSPEHFYPLHVAMGAAGEDAKAEQ 241 (264)
Q Consensus 211 p~~~~ahp~~~h~~pl~~a~Ga~~~~~~~~~ 241 (264)
+.++.+||+.+|++||++++||++.. +.++
T Consensus 231 ~~a~~ag~~~~~~~~~~~~~GA~~~~-~~~~ 260 (302)
T 1b4u_B 231 QYLRESGSEGVELVMWLIMRGALPEK-VRDL 260 (302)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHTSCSC-EEEE
T ss_pred hHHHHcCCChhHHHHHHHHHHcCCCC-CCcE
Confidence 67788999888899999999999764 3443
No 4
>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*
Probab=100.00 E-value=8.9e-46 Score=331.11 Aligned_cols=235 Identities=16% Similarity=0.163 Sum_probs=195.7
Q ss_pred EEEEcCCCCC--CCCCCC---hHHHHHHHHHHHHhhcCCCCEEEEEcCCCCCCCCeEEEec-CCCccCCCCCCccccccc
Q 042295 3 TFFISHGSPT--LPIDES---LQVRHFLKAWKEQVFLQKPNSILVISAHWETDVPTVNVVR-QNDTIYDFYGFPEQLYKL 76 (264)
Q Consensus 3 ~~fisHG~P~--~~~~~~---~~~~~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~i~~~~-~~~~~~D~~gfP~~~y~~ 76 (264)
++++|| || +++++. +++.++++++++++.+.+||+||||||||.+....++++. +....+++++|| .++++
T Consensus 6 a~~~pH--~P~~~l~pe~~~~~~~~~a~~~~~~~l~~~~Pd~ivvis~h~~~~~~~~~i~~~~~~~~~~~~~f~-~~g~~ 82 (271)
T 3vsj_A 6 AFLVPG--TPLPQLKPEVPSWGQLAAATERAGKALAASRPDVVLVYSTQWLAVLDQQWLTRPRSEGVHVDENWY-EFGDL 82 (271)
T ss_dssp EEEECC--CSHHHHCTTSHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEESSSEEEECCSEEEEEECCTTTG-GGCCE
T ss_pred EEEcCC--CCccCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccCcEEEeccCCCcccccCCch-hhccc
Confidence 578899 77 767665 4778899999999988999999999999999888777633 345678888888 56799
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCCcceeEeeccccccCCC-CCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 77 KYPAPGAPDLAKRVKELLRTSGFNHVK--EDTKRGLDHGAWTPLMLMYPEAN-IPVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 77 ~y~~~g~~elA~~i~~~l~~~gid~~~--~~~~~~lDHG~~vPL~~l~p~~d-iPVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
+|+++||++||++|.+.+.+.|++ +. .+.++++|||+||||++|+|+.+ +||||||++...++++|++||++|+++
T Consensus 83 ~y~~~gd~~la~~i~~~~~~~g~~-~~~~~~~~~~lDHg~~vpl~~l~~~~~~~pvv~i~~~~~~~~~~~~~lG~al~~~ 161 (271)
T 3vsj_A 83 AYDIRADTALAEACVTSSPLHGVH-ARGVNYDGFPIDTGTITACTLMGIGTDAFPLVVGSNNLYHSGEITEKLAALAVDC 161 (271)
T ss_dssp EEEEEBCHHHHHHHHHHHHHTTCC-EEEECCTTCCCCHHHHHHHHHHTCSSSSSCEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred cccCcCCHHHHHHHHHHHHHCCCc-EEeecCCCCCcchhHHHHHHHHhccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999996 53 35789999999999999999977 999999999889999999999999996
Q ss_pred ---ccCCeEEEEecCCcccccccccC---CCCCcchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHH
Q 042295 154 ---KDEGVLIIGSGSATHNLKALQFD---GDSVVSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLH 227 (264)
Q Consensus 154 ---~d~~v~iIaSG~lsH~l~~~~~~---~~~~~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~ 227 (264)
+++||+|||||++|||+...++. ..++.+|+++||+|++++|+++|.++|+++..+ ....+. ++|++.++.
T Consensus 162 ~~~~~~~vlii~SGdlsH~l~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~~D~~~L~~~~~~--~~~~a~-g~~G~~~~~ 238 (271)
T 3vsj_A 162 AKDQNKRVAVVGVGGLSGSLFREEIDPREDRIANEEDDKWNRRVLKLIEAGDVSALREAMPV--YAKEAR-VDMGFKHLH 238 (271)
T ss_dssp HHHTTCCEEEEEECCSCCCCCSSCCCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH--HHHHTT-CGGGGHHHH
T ss_pred HHHcCCCEEEEEECccccCCcccCCCCCCCCCCCcchHHHHHHHHHHHHCCCHHHHHhcCHH--HHHHhc-cCCcHHHHH
Confidence 38999999999999999633321 113368999999999999999999999999643 222232 479999999
Q ss_pred HHhcccCCC-CceeEecc
Q 042295 228 VAMGAAGED-AKAEQIHQ 244 (264)
Q Consensus 228 ~a~Ga~~~~-~~~~~~~~ 244 (264)
+++||.+.. .+++++.+
T Consensus 239 ~l~gal~~~~~~~~ll~Y 256 (271)
T 3vsj_A 239 WILGALKGKFSGANVLGY 256 (271)
T ss_dssp HHHHHTTTCCSEEEEEEE
T ss_pred HHHHhcCCCCCCcceeee
Confidence 999998753 36666654
No 5
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=99.72 E-value=5.5e-18 Score=152.75 Aligned_cols=177 Identities=12% Similarity=0.062 Sum_probs=125.8
Q ss_pred cCCCCEEEEEcC-CCCCCCCeEEEecCCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCccccc-CCCCCc
Q 042295 34 LQKPNSILVISA-HWETDVPTVNVVRQNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTSGFNHVKED-TKRGLD 111 (264)
Q Consensus 34 ~~~Pd~IVviS~-Hw~~~~~~i~~~~~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~-~~~~lD 111 (264)
..+||+|||++| |..... .+.+..... | .-| + .+.+.|.+++++|.+.. .+ ...+ .....|
T Consensus 64 ~~~p~~VvilGP~H~~~~~-~~a~~~~~~----~-~TP--l----G~l~vD~el~~~L~~~~---~~--~~~d~~~~~~E 126 (293)
T 3bcz_A 64 PSITRRIFILGPSHHVPLS-RCALSSVDI----Y-RTP--L----YDLRIDQKIYGELWKTG---MF--ERMSLQTDEDE 126 (293)
T ss_dssp TTTCCEEEEEEECSSSCCS-SEEECSCSE----E-CCS--S----CCEEBCHHHHHHHHHTS---CE--EECCHHHHHHC
T ss_pred cCCCCEEEEECCCCCCCCC-ceEEccCCc----e-ECC--C----ccCCCCHHHHHHHHhcC---Cc--ccccccccchh
Confidence 358999999998 976543 244432111 1 112 1 12455999998887653 22 1112 123468
Q ss_pred ceeEeeccccc---cC--CCCCeeeeeCCCCCChHHHHHHHHHhcccc-cCCeEEEEecCCcccccccccCCCC-----C
Q 042295 112 HGAWTPLMLMY---PE--ANIPVCQLSLQPEKDGTYHYNVGKALAPLK-DEGVLIIGSGSATHNLKALQFDGDS-----V 180 (264)
Q Consensus 112 HG~~vPL~~l~---p~--~diPVV~is~~~~~~~~~~~~lG~aL~~~~-d~~v~iIaSG~lsH~l~~~~~~~~~-----~ 180 (264)
|++-|+|-|+. +. .++|||||.++ ..++++++++|++|+++. +.+++||+||++||+-...+..+.. .
T Consensus 127 HSlEv~LPfL~~~~~~~~~~~~IVPI~vg-~~~~~~~~~~g~~l~~~~~~~~~l~V~SsDlsH~g~~fgy~~~~~~~~~~ 205 (293)
T 3bcz_A 127 HSIEMHLPYTAKAMESHKDEFTIIPVLVG-ALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEI 205 (293)
T ss_dssp CTTGGGHHHHHHHTGGGTTSCEEEEEEEC-CCCHHHHHHHHHHHHHHHTCTTEEEEEECCCCEEBGGGTBCCCCGGGCSH
T ss_pred eEEEeeHHHHHHHhCCCCCCceEEEEEcC-CCCHHHHHHHHHHHHHHHhCCCeEEEEeCCccCCCCCCCCCccccccchh
Confidence 99999988764 32 38999999999 689999999999999974 5599999999999993322211110 2
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHhcchhhCCcchhcCCCCcchHHHHHHhcccC
Q 042295 181 VSWASEFDCWLKDALLQGRYEDVNHYEEKAPYGKMAHPSPEHFYPLHVAMGAAG 234 (264)
Q Consensus 181 ~~~~~~FD~~~~~~l~~gd~~~l~~~~~~~p~~~~ahp~~~h~~pl~~a~Ga~~ 234 (264)
.+++++||+.++++|+++|.++++++.+ ....+.|++.|+.++++++.
T Consensus 206 ~~~~~~~D~~~i~~i~~~d~~~~~~~~~------~~~~t~CG~~pi~~~l~a~~ 253 (293)
T 3bcz_A 206 YRSIEHLDKMGMSIIEQLDPVSFSNYLK------KYHNTICGRHPIGVLLNAIT 253 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH------HHCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH------HhCcCcCcHHHHHHHHHHHH
Confidence 3568999999999999999999999743 34557899999999988764
No 6
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=80.07 E-value=8.2 Score=34.14 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCC-CCCCeEEEec--CCCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhC---CCCcccccCCC
Q 042295 35 QKPNSILVISAHWE-TDVPTVNVVR--QNDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTS---GFNHVKEDTKR 108 (264)
Q Consensus 35 ~~Pd~IVviS~Hw~-~~~~~i~~~~--~~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~---gid~~~~~~~~ 108 (264)
.+||.||++|=|-- +..+.+|+.. ++ ..-+|+|-|.++ ++.+|.+...+.+.+++. +++ +.....
T Consensus 91 ~~~d~iIflSRH~s~~~~p~LTvH~tGN~-g~a~~GG~p~~l------a~a~P~~~~~lLr~l~~~~~~~fe-vt~EAT- 161 (298)
T 2gfq_A 91 FKPEIIAFASRHSSKQKLPALTTHVTGNW-GKAMYGGKDESF------AVAIPSAMKLSLLKMSELNDLGWT-VCYEAT- 161 (298)
T ss_dssp CCCSEEEEEEEEECSSCCCEEEEECCEES-SCCSSSSCTTEE------CBBCHHHHHHHHHHHHHHCCSCCE-EEECCS-
T ss_pred CCCcEEEEEeccccCCCCceEEEeCCCCC-CccccCCCCCcc------ccCCHHHHHHHHHHHHHhcCCCCE-EEEecc-
Confidence 45999999999954 5667777753 23 366788988865 566899988888777654 342 332111
Q ss_pred CCcceeEeeccccccC-CCCCeeeeeCCCC----CChHHHHHHHHHhccccc-------CCeEEEEecCCcccc
Q 042295 109 GLDHGAWTPLMLMYPE-ANIPVCQLSLQPE----KDGTYHYNVGKALAPLKD-------EGVLIIGSGSATHNL 170 (264)
Q Consensus 109 ~lDHG~~vPL~~l~p~-~diPVV~is~~~~----~~~~~~~~lG~aL~~~~d-------~~v~iIaSG~lsH~l 170 (264)
=|| |. .++|.+=|=|... .+++.+-.+.+++-++.+ +...+||-||. |-.
T Consensus 162 --HHG---------Pt~l~~Ps~FVEIGSte~eW~d~~A~~~vA~av~~~l~~~~~~~~~~~~~iG~GGg-HYa 223 (298)
T 2gfq_A 162 --HHG---------PTELEVPSFFIEIGSSEEEWINDRAGEIIAETIIYVLDNYEKGRSKFKVALGIGGG-HYA 223 (298)
T ss_dssp --CSS---------CCCCCSBEEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECSC-TTC
T ss_pred --ccC---------CCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhccchhcccCCCEEEEeCCC-CcC
Confidence 133 34 5788877777644 267777777777666531 45688999987 643
No 7
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=79.95 E-value=19 Score=31.50 Aligned_cols=115 Identities=24% Similarity=0.258 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCC-CCCCeEEEecC-CCccCCCCCCccccccccCCCCCCHHHHHHHHHHHHhC-----CCCcccccCCC
Q 042295 36 KPNSILVISAHWE-TDVPTVNVVRQ-NDTIYDFYGFPEQLYKLKYPAPGAPDLAKRVKELLRTS-----GFNHVKEDTKR 108 (264)
Q Consensus 36 ~Pd~IVviS~Hw~-~~~~~i~~~~~-~~~~~D~~gfP~~~y~~~y~~~g~~elA~~i~~~l~~~-----gid~~~~~~~~ 108 (264)
.+|.||++|=|-- +..+.+|+... +...-+|+|-|.++ ++.+|.+...+.+.+++. +++ +.....
T Consensus 70 g~d~iIflSRH~s~~~~p~LTvH~tGN~~~a~~GG~p~~l------a~a~P~~~~~~L~~l~~~~~~~~~fe-v~~EAT- 141 (282)
T 1yqe_A 70 DFEEILFASRHSSKDGRKIFTVHVSGNVGTADFGGKPYSL------AKPSPQTMKNYVLALRERLDRKPEFE-FTMEVT- 141 (282)
T ss_dssp CCSEEEEEEEEECTTCCCEEEEECCBCSSCCTTSSCTTCB------CCBCHHHHHHHHHHHHTTGGGSTTCE-EEECCS-
T ss_pred CCCEEEEEeccccCCCCceEEEeCCCCCCccccCCCCCcc------ccCCHHHHHHHHHHHHHHhccCCCcE-EEEEcc-
Confidence 3799999999954 56677777632 22466788988764 567999998888888654 232 222111
Q ss_pred CCcceeEeeccccccC-CCCCeeeeeCCCC----CChHHHHHHHHHhcccc----cCCeEEEEecCCcccc
Q 042295 109 GLDHGAWTPLMLMYPE-ANIPVCQLSLQPE----KDGTYHYNVGKALAPLK----DEGVLIIGSGSATHNL 170 (264)
Q Consensus 109 ~lDHG~~vPL~~l~p~-~diPVV~is~~~~----~~~~~~~~lG~aL~~~~----d~~v~iIaSG~lsH~l 170 (264)
=|| |. .++|.+=|=|... .+++.+-.+.+++-++. ++...+||-||. |-.
T Consensus 142 --HHG---------Pt~~~~Ps~FVEIGSte~eW~d~~a~~~vA~av~~~l~~~~~~~~~~ig~GGg-HYa 200 (282)
T 1yqe_A 142 --HHG---------PSEISKPSAFYEIGSTEEEWKDREAAEVVAEAMLDAIRAEKMDWNVAVGVGGT-HYA 200 (282)
T ss_dssp --CSS---------CCCCCSCEEEEEEEESHHHHTCHHHHHHHHHHHHHHHHCCCCCCEEEEEECSC-TTC
T ss_pred --ccC---------CCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhccccccCCEEEEeCCC-CcC
Confidence 132 44 6788887777644 26777777777776663 245678999887 643
No 8
>2q7s_A N-formylglutamate amidohydrolase; YP_297560.1, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.00A {Ralstonia eutropha} SCOP: c.56.5.9
Probab=62.68 E-value=2.7 Score=37.02 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=49.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC--C------hHHHHHHHH
Q 042295 77 KYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK--D------GTYHYNVGK 148 (264)
Q Consensus 77 ~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~--~------~~~~~~lG~ 148 (264)
.+....+++|++.+.+.|++.|+. +..+..+. |.++.=++=.|...++.|||-++..+ + ....-+|.+
T Consensus 198 ~~g~s~~~~l~~~~~~~l~~~g~~-v~~N~Py~---Gg~it~~yg~P~~g~~aiqiEi~~~lymde~~~~~~~~~~~l~~ 273 (290)
T 2q7s_A 198 RDGTTCEPGLVDLVERELREKGYT-VARNDPYK---GVQLIAQIGRPAERRNSLQIEIRRPLYMEEGTRERNEGFATLQR 273 (290)
T ss_dssp TTTTSSCHHHHHHHHHHHHHTTCC-EEESSSCC---C-CHHHHHCBGGGTEEEEEEEEEGGGTEETTTTEECTHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhhcCCE-EEeCCCcC---cchhHHhhCCCCCCcEEEEEEEchhhhcCCCcccCchHHHHHHH
Confidence 344456999999999999999984 76554443 45554455567789999999996432 1 334456666
Q ss_pred Hhccc
Q 042295 149 ALAPL 153 (264)
Q Consensus 149 aL~~~ 153 (264)
.|+.+
T Consensus 274 ~L~~~ 278 (290)
T 2q7s_A 274 DLTLL 278 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 9
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=57.08 E-value=8.9 Score=31.44 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccc--cCCeEEEE
Q 042295 85 DLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLK--DEGVLIIG 162 (264)
Q Consensus 85 elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~--d~~v~iIa 162 (264)
+-+-.+++.+ +.|.| +-. +||- + -.++....++|||.|.++ .|++=++|.+++ ..+|+|||
T Consensus 39 ~~~v~~a~~~-~~~~d-VII--SRGg---t---a~~lr~~~~iPVV~I~~s-------~~Dil~al~~a~~~~~kIavvg 101 (196)
T 2q5c_A 39 TRASKIAFGL-QDEVD-AII--SRGA---T---SDYIKKSVSIPSISIKVT-------RFDTMRAVYNAKRFGNELALIA 101 (196)
T ss_dssp HHHHHHHHHH-TTTCS-EEE--EEHH---H---HHHHHTTCSSCEEEECCC-------HHHHHHHHHHHGGGCSEEEEEE
T ss_pred HHHHHHHHHh-cCCCe-EEE--ECCh---H---HHHHHHhCCCCEEEEcCC-------HhHHHHHHHHHHhhCCcEEEEe
Confidence 3344445555 56765 332 2331 1 233444468999999998 688888888886 46899999
Q ss_pred ecCCccccc
Q 042295 163 SGSATHNLK 171 (264)
Q Consensus 163 SG~lsH~l~ 171 (264)
.++....+.
T Consensus 102 ~~~~~~~~~ 110 (196)
T 2q5c_A 102 YKHSIVDKH 110 (196)
T ss_dssp ESSCSSCHH
T ss_pred CcchhhHHH
Confidence 999876654
No 10
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=53.34 E-value=14 Score=31.13 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=36.1
Q ss_pred ccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccc--cCCeEEEEecCCccccc
Q 042295 120 LMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLK--DEGVLIIGSGSATHNLK 171 (264)
Q Consensus 120 ~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~--d~~v~iIaSG~lsH~l~ 171 (264)
++....++|||.|.++ .|++=++|.+++ ..+|+|||.++....+.
T Consensus 76 ~Lr~~~~iPVV~I~vs-------~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~ 122 (225)
T 2pju_A 76 YLKSRLSVPVILIKPS-------GYDVLQFLAKAGKLTSSIGVVTYQETIPALV 122 (225)
T ss_dssp HHHTTCSSCEEEECCC-------HHHHHHHHHHTTCTTSCEEEEEESSCCHHHH
T ss_pred HHHhhCCCCEEEecCC-------HHHHHHHHHHHHhhCCcEEEEeCchhhhHHH
Confidence 3444468999999998 688999999986 46899999999876654
No 11
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=47.43 E-value=19 Score=26.83 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=21.0
Q ss_pred cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 042295 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKP 37 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 37 (264)
.+++++||+. +..+.+.++++.+.+++..|
T Consensus 5 alllv~HGS~------~~~~~~~~~~la~~l~~~~~ 34 (133)
T 2xws_A 5 GLVIVGHGSQ------LNHYREVMELHRKRIEESGA 34 (133)
T ss_dssp EEEEEECSCC------CHHHHHHHHHHHHHHHHHTS
T ss_pred eEEEEECCCC------CHHHHHHHHHHHHHHHhhCC
Confidence 4789999993 23456678888888865433
No 12
>2odf_A AGR_C_3887P, hypothetical protein ATU2144; structural genomics, unknown FUNC PSI-2, MCSG, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.56.5.9
Probab=45.67 E-value=7.6 Score=33.44 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccCCCCCcce-eEeeccccccCCCCCeeeeeCCCC--CChHHHHHHHHHhccc
Q 042295 82 GAPDLAKRVKELLRTSGFNHVKEDTKRGLDHG-AWTPLMLMYPEANIPVCQLSLQPE--KDGTYHYNVGKALAPL 153 (264)
Q Consensus 82 g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG-~~vPL~~l~p~~diPVV~is~~~~--~~~~~~~~lG~aL~~~ 153 (264)
.++++++.+.+.|++.|+. +..+..+.-.++ .++-=++=.| ..++.|||-++.. ++......+.+.|+++
T Consensus 175 ~~~~l~~~~~~~l~~~g~~-v~~N~Py~G~~~~~~~~~~~g~~-~g~~avqiEi~~~lymde~~~~~~a~~l~~~ 247 (257)
T 2odf_A 175 NDSRLADAMLAGAEGASLT-VRRNDPYGPEDGVTHTLRLHALP-DGLLNVMIEIRNDLIANEGEQAAIAGFLHEL 247 (257)
T ss_dssp SCCHHHHHHHHHTTTCSSC-EEETCSCCGGGTTTHHHHHHTGG-GTCEEEEEEEEGGGGSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCE-EEeCCCCcCCCCCCeeeHhhcCc-CCceEEEEEEehhhhcCCcchhHHHHHHHHH
Confidence 3789999999999988884 665544432232 2222222234 7899999999754 4666666667766664
No 13
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=41.10 E-value=77 Score=23.58 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCCCccc-ccCCCCC-cceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEE
Q 042295 84 PDLAKRVKELLRTSGFNHVK-EDTKRGL-DHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLII 161 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~-~~~~~~l-DHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iI 161 (264)
.-|.+.|++.+++.|+.-+. ...-.|+ .||.+---.++.-..|.||+...+. ++++.-++=..|+++-+++++.+
T Consensus 29 ~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd---~~eki~~~l~~l~~~v~~Glvt~ 105 (114)
T 1o51_A 29 KPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVD---EEERINLFLKEIDNIDFDGLVFT 105 (114)
T ss_dssp EEHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEE---CHHHHHHHHHHHHTCCCCSEEEE
T ss_pred eEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEc---CHHHHHHHHHHHHHHhCCCEEEE
Confidence 34789999999999983111 1122233 2444444445544568999988876 78888888888888866665544
No 14
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=38.42 E-value=58 Score=26.21 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC--CChHHHHHHHHHhcc-----cccC
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE--KDGTYHYNVGKALAP-----LKDE 156 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~--~~~~~~~~lG~aL~~-----~~d~ 156 (264)
..+|+.|.+.+.+.|++ +.. ..++.- .+ -.++ .-.|-+..++. .-+.....|=+.|.. +.++
T Consensus 36 e~~A~~ia~~l~~~g~~-v~v---~~l~~~--~~---~l~~--~d~vi~g~~Ty~G~~p~~~~~fl~~L~~~~~~~l~~~ 104 (191)
T 1bvy_F 36 EGTARDLADIAMSKGFA-PQV---ATLDSH--AG---NLPR--EGAVLIVTASYNGHPPDNAKQFVDWLDQASADEVKGV 104 (191)
T ss_dssp HHHHHHHHHHHHTTTCC-CEE---EEGGGS--TT---CCCS--SSEEEEEECCBTTBCCTTTHHHHHHHHTCCSSCCTTC
T ss_pred HHHHHHHHHHHHhCCCc-eEE---eeHHHh--hh---hhhh--CCeEEEEEeecCCCcCHHHHHHHHHHHhccchhhCCC
Confidence 46799999999888874 432 111110 00 0111 12222222222 123333444455543 4568
Q ss_pred CeEEEEecCCcc
Q 042295 157 GVLIIGSGSATH 168 (264)
Q Consensus 157 ~v~iIaSG~lsH 168 (264)
+++|+|+|+.+.
T Consensus 105 ~~avfG~Gds~y 116 (191)
T 1bvy_F 105 RYSVFGCGDKNW 116 (191)
T ss_dssp CEEEEEEECTTS
T ss_pred EEEEEEccCCch
Confidence 999999998754
No 15
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=37.90 E-value=42 Score=21.57 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.5
Q ss_pred CeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 128 PVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 128 PVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
|+|+|.+ ...|.++--+|-++|.++
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~ 25 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSV 25 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHH
Confidence 8999999 789999999999988886
No 16
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=35.46 E-value=32 Score=26.83 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=19.6
Q ss_pred cEEEEcCCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 042295 2 ETFFISHGSPTLPIDESLQVRHFLKAWKEQVFLQKP 37 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~~~P 37 (264)
.+++++|||.. ..+.+.++++.+.+++..|
T Consensus 26 avlLv~HGS~~------p~~~~~~~~la~~l~~~~~ 55 (156)
T 1tjn_A 26 GLVIVGHGSQL------NHYREVMELHRKRIEESGA 55 (156)
T ss_dssp EEEEEECCTTS------TTHHHHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCC------HHHHHHHHHHHHHHHhhCC
Confidence 47899999942 2345667777777765433
No 17
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=34.57 E-value=1.9e+02 Score=23.85 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCCCC
Q 042295 22 RHFLKAWKEQVFLQKPNSILVISAHWE 48 (264)
Q Consensus 22 ~~~l~~l~~~l~~~~Pd~IVviS~Hw~ 48 (264)
.+..+.+.+.+.+.+||.||.++-|--
T Consensus 48 ~~~~~~l~~~i~~~~Pd~Vi~vG~a~g 74 (215)
T 3giu_A 48 KKVDNIINKTLASNHYDVVLAIGQAGG 74 (215)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEEECTT
T ss_pred HhHHHHHHHHHHHhCCCEEEEeccCCC
Confidence 445566666677789999999976643
No 18
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=32.48 E-value=2.2e+02 Score=23.69 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCCCCCCCe---EEEecCCCccCCCCCC-cccccccc------CCCCCCHHHHHHHHHH
Q 042295 24 FLKAWKEQVFLQKPNSILVISAHWETDVPT---VNVVRQNDTIYDFYGF-PEQLYKLK------YPAPGAPDLAKRVKEL 93 (264)
Q Consensus 24 ~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~---i~~~~~~~~~~D~~gf-P~~~y~~~------y~~~g~~elA~~i~~~ 93 (264)
..+.+.+.+.+.+||.||.++-+--....+ +..+...-.+-|-.|+ |.. -.+. |...-+ .+++++.
T Consensus 50 ~~~~l~~~i~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d-~~i~~~Gp~a~~stLp---v~~~v~~ 125 (223)
T 3ro0_A 50 SLAVLREAMKKHQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVG-EDISQGGPAAYWTGLP---IKRIVEE 125 (223)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCS-BCSSTTSCSEEECCSC---HHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCC-CCCcCCCCceeecCCC---HHHHHHH
Confidence 445555556667999999997765433322 2332211123333333 210 0000 111112 4778888
Q ss_pred HHhCCCCcccccC
Q 042295 94 LRTSGFNHVKEDT 106 (264)
Q Consensus 94 l~~~gid~~~~~~ 106 (264)
+++.|+ ++..+.
T Consensus 126 l~~~gi-pa~vS~ 137 (223)
T 3ro0_A 126 IKKEGI-PAAVSY 137 (223)
T ss_dssp HHHTTC-CBCCBS
T ss_pred HHHCCC-CEEEeC
Confidence 888899 465443
No 19
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=32.20 E-value=1.6e+02 Score=24.41 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCCCC
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWETD 50 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~~~ 50 (264)
+..+.+.+.+.+.+||.||.++=|--..
T Consensus 48 ~~~~~l~~~i~~~~Pd~Vi~vG~aggr~ 75 (220)
T 1a2z_A 48 RATIELKRYLEEIKPEIVINLGLAPTYS 75 (220)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCc
Confidence 4455555556567999999998665433
No 20
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=31.67 E-value=53 Score=24.22 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=18.7
Q ss_pred EEEEcCCCCCCCCCCChHHHHHHHHHHHHhhc
Q 042295 3 TFFISHGSPTLPIDESLQVRHFLKAWKEQVFL 34 (264)
Q Consensus 3 ~~fisHG~P~~~~~~~~~~~~~l~~l~~~l~~ 34 (264)
+++++|||. +..+.+.++++.+.+++
T Consensus 8 lllv~HGS~------~~~~~~~~~~l~~~l~~ 33 (126)
T 3lyh_A 8 IILLAHGSS------DARWCETFEKLAEPTVE 33 (126)
T ss_dssp EEEEECCCS------CHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCC------CHHHHHHHHHHHHHHHh
Confidence 689999993 23456677888777754
No 21
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=31.67 E-value=1.4e+02 Score=27.12 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCCcccc---cCCCCCcceeEeeccccccC-CCCCeeeeeCCCC---CChHHHHHHHHHhcc-cccC
Q 042295 85 DLAKRVKELLRTSGFNHVKE---DTKRGLDHGAWTPLMLMYPE-ANIPVCQLSLQPE---KDGTYHYNVGKALAP-LKDE 156 (264)
Q Consensus 85 elA~~i~~~l~~~gid~~~~---~~~~~lDHG~~vPL~~l~p~-~diPVV~is~~~~---~~~~~~~~lG~aL~~-~~d~ 156 (264)
.+|+.|++.+.++|++ +.. ...-.-|.+ .+..+ .+-.-|-+..++. +-|.-..-|...... +.++
T Consensus 281 ~mA~~ia~gl~~~Gv~-~~~~~~~d~~~~~~s------~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~K 353 (410)
T 4dik_A 281 NVMKKAIDSLKEKGFT-PVVYKFSDEERPAIS------EILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEK 353 (410)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEEECSSCCCCHH------HHHHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhcCCc-eEEEEeccCCCCCHH------HHHHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCCC
Confidence 4799999999999984 321 110111111 11111 2344444433322 223322334433332 2567
Q ss_pred CeEEEEecCCc
Q 042295 157 GVLIIGSGSAT 167 (264)
Q Consensus 157 ~v~iIaSG~ls 167 (264)
.++++||+|-|
T Consensus 354 ~~~~FGSyGWs 364 (410)
T 4dik_A 354 PVLVFGVHGWA 364 (410)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEECCCCC
Confidence 89999998754
No 22
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=31.18 E-value=2.1e+02 Score=23.11 Aligned_cols=76 Identities=18% Similarity=0.121 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCCCCCCe---EEEecCCCccCCCCCC-cc---------ccccccCCCCCCHHHHHH
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWETDVPT---VNVVRQNDTIYDFYGF-PE---------QLYKLKYPAPGAPDLAKR 89 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~~~~~~---i~~~~~~~~~~D~~gf-P~---------~~y~~~y~~~g~~elA~~ 89 (264)
...+.+-+.+.+.+||.||.++-|--....+ +..+...-.+-|-.|. |. ..|.-+- + .++
T Consensus 44 ~~~~~l~~~~~~~~pd~vi~~G~a~~r~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~l----p---~~~ 116 (192)
T 2ebj_A 44 EALGEALEDLHREGPKAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIVPGGPLALPARF----P---VKP 116 (192)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTCCCCCSBCSSTTSCSEEECBS----C---HHH
T ss_pred cHHHHHHHHHHHhCCCEEEEeccCCCCceEEeEEEEEcCCCccCCCCCCCCCCCCceeCCCCceeEcCC----C---HHH
Confidence 4455566666678999999997664333322 2222221222333332 21 1121111 1 477
Q ss_pred HHHHHHhCCCCcccccC
Q 042295 90 VKELLRTSGFNHVKEDT 106 (264)
Q Consensus 90 i~~~l~~~gid~~~~~~ 106 (264)
+++.+++.|+ ++..+.
T Consensus 117 iv~~l~~~g~-p~~vS~ 132 (192)
T 2ebj_A 117 VLARWREAGI-PGRPSL 132 (192)
T ss_dssp HHHHHHHTTC-CEEEES
T ss_pred HHHHHHHCCC-CEEEeC
Confidence 8888888999 465543
No 23
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=31.17 E-value=1.7e+02 Score=23.87 Aligned_cols=27 Identities=4% Similarity=-0.102 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCCC
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWET 49 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~~ 49 (264)
+..+.+.+.+.+.+||.||.++=|--.
T Consensus 44 ~~~~~l~~~~~~~~Pd~vi~vG~a~gr 70 (206)
T 1iu8_A 44 RAREKLLKVLDDVRPDITINLGLAPGR 70 (206)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTC
T ss_pred HHHHHHHHHHHHhCCCEEEEcccCCCC
Confidence 344455555556799999999866543
No 24
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.49 E-value=1.1e+02 Score=25.13 Aligned_cols=78 Identities=4% Similarity=-0.122 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC---------ChHHHHHHHHHhc
Q 042295 81 PGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK---------DGTYHYNVGKALA 151 (264)
Q Consensus 81 ~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~---------~~~~~~~lG~aL~ 151 (264)
..+++....+.+.+.+.++|-+.... .+. ..++.-...+..+|||.+.-.... +.+..+..++.|.
T Consensus 47 ~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~--~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~ 121 (291)
T 3egc_A 47 AEDIVREREAVGQFFERRVDGLILAP---SEG--EHDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLI 121 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCSEEEECC---CSS--CCHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeC---CCC--ChHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHH
Confidence 44666667777777777776222111 111 112222234568999988765331 2355566667777
Q ss_pred ccccCCeEEEEe
Q 042295 152 PLKDEGVLIIGS 163 (264)
Q Consensus 152 ~~~d~~v~iIaS 163 (264)
+...++|++|+.
T Consensus 122 ~~G~~~i~~i~~ 133 (291)
T 3egc_A 122 ARGHTRIGAIVG 133 (291)
T ss_dssp HTTCCSEEEECS
T ss_pred HcCCCEEEEEeC
Confidence 767789999864
No 25
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=30.29 E-value=2e+02 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCCCC
Q 042295 24 FLKAWKEQVFLQKPNSILVISAHWET 49 (264)
Q Consensus 24 ~l~~l~~~l~~~~Pd~IVviS~Hw~~ 49 (264)
..+.+.+.+.+.+||.||.++-|--.
T Consensus 49 ~~~~l~~~~~~~~Pd~VihvG~aggr 74 (215)
T 3lac_A 49 SISVLKEYIEELAPEFIICIGQAGGR 74 (215)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECTTC
T ss_pred HHHHHHHHHHhhCCCeEEEeccCCCC
Confidence 34455555556799999999877543
No 26
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=28.99 E-value=1.7e+02 Score=21.49 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC-----ChHHHHHHHHHhcc--cccC
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK-----DGTYHYNVGKALAP--LKDE 156 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~-----~~~~~~~lG~aL~~--~~d~ 156 (264)
..+|+.|.+.+.+.|++ +....-...| ..-+ . .+.-.|-+..+... -|....++=+.|.. +..+
T Consensus 16 ~~~A~~ia~~l~~~g~~-v~~~~~~~~~------~~~l-~-~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k 86 (148)
T 3f6r_A 16 ESIAQKLEELIAAGGHE-VTLLNAADAS------AENL-A-DGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGR 86 (148)
T ss_dssp HHHHHHHHHHHHTTTCE-EEEEETTTBC------CTTT-T-TTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTC
T ss_pred HHHHHHHHHHHHhCCCe-EEEEehhhCC------HhHh-c-ccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCC
Confidence 46899999999888873 4321100000 0000 1 02223333332221 23444444445543 5678
Q ss_pred CeEEEEecCCcc
Q 042295 157 GVLIIGSGSATH 168 (264)
Q Consensus 157 ~v~iIaSG~lsH 168 (264)
.++++|||+.+.
T Consensus 87 ~~~vfg~G~~~y 98 (148)
T 3f6r_A 87 KVAAFASGDQEY 98 (148)
T ss_dssp EEEEEEEECTTS
T ss_pred EEEEEEeCCCCH
Confidence 899999998754
No 27
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=28.43 E-value=84 Score=23.89 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhCCCCcccc--cCCCCC-cceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeE
Q 042295 83 APDLAKRVKELLRTSGFNHVKE--DTKRGL-DHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVL 159 (264)
Q Consensus 83 ~~elA~~i~~~l~~~gid~~~~--~~~~~l-DHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~ 159 (264)
+.-|.+.|++.+++.|+. =+. ..-.|+ -||.+---+++.-..|.||+...+. ++++.-++=..|.++-+.+++
T Consensus 24 g~pL~~~Iv~~a~~~Gia-GaTV~rgi~GfG~~g~ih~~~~l~ls~dlPVvIe~Vd---~~eki~~~l~~l~~lv~~GlV 99 (127)
T 2dcl_A 24 GRPLYKVIVEKLREMGIA-GATVYRGIYGFGKKSRVHSSDVIRLSTDLPIIVEVVD---RGHNIEKVVNVIKPMIKDGMI 99 (127)
T ss_dssp TEEHHHHHHHHHHHTTCS-CEEEEECSEEEC--------------CCCEEEEEEEE---EHHHHHHHHHHHTTTCSSSEE
T ss_pred CcCHHHHHHHHHHHCCCC-eEEEEcCcEEECCCCCEecceeeecCCCCCEEEEEEc---CHHHHHHHHHHHHHHhCCCEE
Confidence 344889999999999983 211 112222 2444444445544569999988876 788888888889888666655
Q ss_pred EEE
Q 042295 160 IIG 162 (264)
Q Consensus 160 iIa 162 (264)
++-
T Consensus 100 t~e 102 (127)
T 2dcl_A 100 TVE 102 (127)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 28
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=27.42 E-value=2e+02 Score=23.53 Aligned_cols=27 Identities=7% Similarity=-0.009 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCCC
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWET 49 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~~ 49 (264)
++.+.+.+.+.+.+||.||.++=|--.
T Consensus 47 ~~~~~l~~~~~~~~pd~vi~vG~a~gr 73 (208)
T 1x10_A 47 KAKEVLEKTLEEIKPDIAIHVGLAPGR 73 (208)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTC
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCC
Confidence 334455555556799999999866443
No 29
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.98 E-value=1.1e+02 Score=25.05 Aligned_cols=78 Identities=10% Similarity=0.125 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC---------ChHHHHHHHHHhcc
Q 042295 82 GAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK---------DGTYHYNVGKALAP 152 (264)
Q Consensus 82 g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~---------~~~~~~~lG~aL~~ 152 (264)
++++.-..+.+.+.+.++|-+.... .+. .+..-...+..+|||.+.-.... +.+-.+..++.|.+
T Consensus 47 ~~~~~~~~~~~~l~~~~vdgiIi~~---~~~---~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 120 (276)
T 3jy6_A 47 ADIEREKTLLRAIGSRGFDGLILQS---FSN---PQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQ 120 (276)
T ss_dssp TCHHHHHHHHHHHHTTTCSEEEEES---SCC---HHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEec---CCc---HHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHH
Confidence 3455555666666666665211111 111 12222223467888777653221 23556667777777
Q ss_pred cccCCeEEEEecC
Q 042295 153 LKDEGVLIIGSGS 165 (264)
Q Consensus 153 ~~d~~v~iIaSG~ 165 (264)
...++|++|+...
T Consensus 121 ~G~~~I~~i~~~~ 133 (276)
T 3jy6_A 121 QGYQHVVVLTSEL 133 (276)
T ss_dssp TTCCEEEEEEECS
T ss_pred cCCCeEEEEecCC
Confidence 6778899997643
No 30
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=26.91 E-value=71 Score=25.13 Aligned_cols=54 Identities=28% Similarity=0.622 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCC-hHHHHHHHHHhcccc-cCCeEEEE
Q 042295 85 DLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKD-GTYHYNVGKALAPLK-DEGVLIIG 162 (264)
Q Consensus 85 elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~-~~~~~~lG~aL~~~~-d~~v~iIa 162 (264)
+|-+.|.+.|++.|.+ + .|.|+... + ..| |.-..++++++.+=. |++|+|=|
T Consensus 13 ~lK~~i~~~L~~~G~e-V-------~D~G~~~~------~------------~~dYpd~a~~va~~V~~g~~d~GIliCG 66 (149)
T 3he8_A 13 NLKREIADFLKKRGYE-V-------IDFGTHGN------E------------SVDYPDFGLKVAEAVKSGECDRGIVICG 66 (149)
T ss_dssp HHHHHHHHHHHHTTCE-E-------EECCCCSS------S------------CCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred HHHHHHHHHHHHCCCE-E-------EEcCCCCC------C------------CCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 5788999999999983 5 36665211 0 112 456677777777643 67899999
Q ss_pred ec
Q 042295 163 SG 164 (264)
Q Consensus 163 SG 164 (264)
||
T Consensus 67 TG 68 (149)
T 3he8_A 67 TG 68 (149)
T ss_dssp SS
T ss_pred Cc
Confidence 99
No 31
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=26.59 E-value=54 Score=29.35 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcC
Q 042295 19 LQVRHFLKAWKEQVFLQKPNSILVISA 45 (264)
Q Consensus 19 ~~~~~~l~~l~~~l~~~~Pd~IVviS~ 45 (264)
..+.+.+.++.+.+++.+||+||++.+
T Consensus 77 ~~~~~~~~~l~~~l~~~kPD~Vlv~gd 103 (385)
T 4hwg_A 77 KSIGLVIEKVDEVLEKEKPDAVLFYGD 103 (385)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 466788889999898999999999865
No 32
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=25.40 E-value=1.8e+02 Score=24.25 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCCCCC
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAHWET 49 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~Hw~~ 49 (264)
+..+.+.+.+.+.+||.||.++-+--.
T Consensus 70 ~~~~~l~~~i~~~~Pd~VihvG~aggr 96 (228)
T 4hps_A 70 TSLEHLYAAVDKYQPELVISVGQAGGR 96 (228)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTC
T ss_pred HHHHHHHHHHHhhCCCEEEEeccCCCC
Confidence 344555555666799999999776543
No 33
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=24.94 E-value=62 Score=21.99 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=47.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhccc
Q 042295 74 YKLKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPL 153 (264)
Q Consensus 74 y~~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~ 153 (264)
|.++--+-.+.+=|+.+.+.|...|++ +.... .-.+.-|-+....|.++..++-+.|++.
T Consensus 10 ~~vQvGaF~~~~~A~~l~~~L~~~G~~-a~i~~-------------------~~~~yRV~vGpf~s~~~A~~~~~~L~~~ 69 (81)
T 1uta_A 10 WMVQCGSFRGAEQAETVRAQLAFEGFD-SKITT-------------------NNGWNRVVIGPVKGKENADSTLNRLKMA 69 (81)
T ss_dssp CCCBCCEESCHHHHHHHHHHHHHHTCC-EEEEE-------------------CSSSEEEEESSCBTTTHHHHHHHHHHHH
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhCCCC-eEEEe-------------------CCcEEEEEECCcCCHHHHHHHHHHHHHc
Confidence 445655566889999999999988984 43210 1123334455456778888888888875
Q ss_pred ccCCeEEEEecC
Q 042295 154 KDEGVLIIGSGS 165 (264)
Q Consensus 154 ~d~~v~iIaSG~ 165 (264)
.=..++|..|||
T Consensus 70 g~~~~iv~~~~g 81 (81)
T 1uta_A 70 GHTNCIRLAAGG 81 (81)
T ss_dssp CCSCCBCCCCCC
T ss_pred CCCcEEEeCCCC
Confidence 445677778775
No 34
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=23.98 E-value=3e+02 Score=22.59 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCC
Q 042295 23 HFLKAWKEQVFLQKPNSILVISAH 46 (264)
Q Consensus 23 ~~l~~l~~~l~~~~Pd~IVviS~H 46 (264)
++.+.+-+.+.+.+||+||.+.=+
T Consensus 49 ~~~~~l~~~i~~~~Pd~vi~~G~a 72 (216)
T 4gxh_A 49 TSLEHLYAAVDKYQPELVISVGQA 72 (216)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHHhhCCCEEEEeccC
Confidence 445556666667899999999644
No 35
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=23.28 E-value=89 Score=25.11 Aligned_cols=54 Identities=28% Similarity=0.622 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCC-hHHHHHHHHHhcccc-cCCeEEEE
Q 042295 85 DLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKD-GTYHYNVGKALAPLK-DEGVLIIG 162 (264)
Q Consensus 85 elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~-~~~~~~lG~aL~~~~-d~~v~iIa 162 (264)
+|-+.|.+.|++.|.+ + .|.|+... + ..| |.-..++++++.+=. |++|+|=|
T Consensus 33 ~lK~~i~~~L~~~G~e-V-------~D~G~~~~------~------------~~dYpd~a~~va~~V~~g~~d~GIliCG 86 (169)
T 3ph3_A 33 NLKREIADFLKKRGYE-V-------IDFGTHGN------E------------SVDYPDFGLKVAEAVKSGECDRGIVICG 86 (169)
T ss_dssp HHHHHHHHHHHHTTCE-E-------EECCCCSS------S------------CCCHHHHHHHHHHHHHTTSSSEEEEEES
T ss_pred HHHHHHHHHHHHCCCE-E-------EEcCCCCC------C------------CCCHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 5778999999999983 5 35665211 0 112 456677777777643 67899999
Q ss_pred ec
Q 042295 163 SG 164 (264)
Q Consensus 163 SG 164 (264)
||
T Consensus 87 TG 88 (169)
T 3ph3_A 87 TG 88 (169)
T ss_dssp SS
T ss_pred Cc
Confidence 99
No 36
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=23.13 E-value=43 Score=30.83 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=18.7
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCCCCCC
Q 042295 24 FLKAWKEQVFLQKPNSILVISAHWETD 50 (264)
Q Consensus 24 ~l~~l~~~l~~~~Pd~IVviS~Hw~~~ 50 (264)
.|..++..| ..-++|+||||.|++.
T Consensus 89 ~l~a~~~~L--knkKvV~iiSPQWF~k 113 (407)
T 3bma_A 89 GMQQMLPQL--ENKQVVYVISPQWFSK 113 (407)
T ss_dssp HHTTSHHHH--TTCEEEEECCGGGCCS
T ss_pred HHHhhhhhc--cCCeEEEEECccccCC
Confidence 355666776 4558899999999985
No 37
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=23.10 E-value=1.7e+02 Score=23.51 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCCCCeeeeeCCCCC---------ChHHHHHHHHHhcccccCCeEEEEe
Q 042295 124 EANIPVCQLSLQPEK---------DGTYHYNVGKALAPLKDEGVLIIGS 163 (264)
Q Consensus 124 ~~diPVV~is~~~~~---------~~~~~~~lG~aL~~~~d~~v~iIaS 163 (264)
+..+|||.+.-.... +.+..+..++.|.+...++|++|+.
T Consensus 80 ~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~ 128 (272)
T 3o74_A 80 DKGLPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLSSAPRSIALIGA 128 (272)
T ss_dssp HTTCCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred HcCCCEEEEccCCCccccCEEEEchHHHHHHHHHHHHHCCCcEEEEEec
Confidence 357888777654221 2345566667777766788999965
No 38
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=22.62 E-value=1.4e+02 Score=27.46 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=42.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccC--CCCC-eeeeeCCCCCChHHHHHHHHHhcc
Q 042295 76 LKYPAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPE--ANIP-VCQLSLQPEKDGTYHYNVGKALAP 152 (264)
Q Consensus 76 ~~y~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~--~diP-VV~is~~~~~~~~~~~~lG~aL~~ 152 (264)
+-+-++|++++.+.|.+.+++.|+ ++....+.. .+. +.+|. .+-| +|-||.| ..+|.-..++-+.|..
T Consensus 75 lVi~at~~~~~n~~i~~~a~~~~i-~vn~~d~~e--~~~-----~~~pa~~~~~~l~iaIsT~-Gksp~la~~ir~~ie~ 145 (457)
T 1pjq_A 75 LAIAATDDDTVNQRVSDAAESRRI-FCNVVDAPK--AAS-----FIMPSIIDRSPLMVAVSSG-GTSPVLARLLREKLES 145 (457)
T ss_dssp EEEECCSCHHHHHHHHHHHHHTTC-EEEETTCTT--SSS-----EECCEEEEETTEEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCC-EEEECCCcc--cCc-----eEeeeEEEeCCeEEEEECC-CCChHHHHHHHHHHHH
Confidence 445689999999999999999999 663322222 222 23333 2456 8888855 6676655555444444
No 39
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=22.45 E-value=1.2e+02 Score=24.69 Aligned_cols=81 Identities=15% Similarity=0.084 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccCCCCCccee---EeeccccccCCCCCeeeeeCCCCC---------ChHHHHHHH
Q 042295 80 APGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGA---WTPLMLMYPEANIPVCQLSLQPEK---------DGTYHYNVG 147 (264)
Q Consensus 80 ~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~---~vPL~~l~p~~diPVV~is~~~~~---------~~~~~~~lG 147 (264)
...+++.-..+.+.+.+.++|-+... +.|... ..++.-...+..+|||.+.-.... +.+..+..+
T Consensus 53 ~~~~~~~~~~~~~~l~~~~vdgiIi~---~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~ 129 (298)
T 3tb6_A 53 TNNNPDNERRGLENLLSQHIDGLIVE---PTKSALQTPNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMMAA 129 (298)
T ss_dssp CTTCHHHHHHHHHHHHHTCCSEEEEC---CSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHCCCCEEEEe---cccccccCCcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHHHH
Confidence 34577777777777777777622111 111110 011111223468898887654221 235556666
Q ss_pred HHhcccccCCeEEEEe
Q 042295 148 KALAPLKDEGVLIIGS 163 (264)
Q Consensus 148 ~aL~~~~d~~v~iIaS 163 (264)
+.|.+...++|++|+.
T Consensus 130 ~~L~~~G~~~i~~i~~ 145 (298)
T 3tb6_A 130 EHLLSLGHTHMMGIFK 145 (298)
T ss_dssp HHHHHTTCCSEEEEEE
T ss_pred HHHHHCCCCcEEEEcC
Confidence 7777767789998864
No 40
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=22.43 E-value=77 Score=26.74 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=23.2
Q ss_pred cEEEEcCCCCCCCCCCChHHHH-HHHHHHHHhhcCCCCEE
Q 042295 2 ETFFISHGSPTLPIDESLQVRH-FLKAWKEQVFLQKPNSI 40 (264)
Q Consensus 2 p~~fisHG~P~~~~~~~~~~~~-~l~~l~~~l~~~~Pd~I 40 (264)
..++++||+ .+..+.+ .++.+.+.+++.-|+.-
T Consensus 4 aillv~hGS------r~~~~~~~~~~~~~~~v~~~~p~~~ 37 (264)
T 2xwp_A 4 ALLVVSFGT------SYHDTCEKNIVACERDLAASCPDRD 37 (264)
T ss_dssp EEEEEECCC------SCHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred eEEEEECCC------CCHHHHHHHHHHHHHHHHHHCCCCe
Confidence 368899999 2345666 88888888876555543
No 41
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=22.29 E-value=91 Score=29.97 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCC-CeeeeeCCC--CCChHHHHHHHHHhc----ccccC
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANI-PVCQLSLQP--EKDGTYHYNVGKALA----PLKDE 156 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~di-PVV~is~~~--~~~~~~~~~lG~aL~----~~~d~ 156 (264)
.++|++|.+.+.+.|++ +....--.+|-.- +.- .++.+- .||-++... ...|.....|=+.|. .+.+.
T Consensus 33 e~~A~~la~~l~~~g~~-~~v~~~~~~~~~~---l~~-~~~~~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~~~~~l~~~ 107 (618)
T 3qe2_A 33 EEFANRLSKDAHRYGMR-GMSADPEEYDLAD---LSS-LPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGV 107 (618)
T ss_dssp HHHHHHHHHHGGGGTCC-EEEECGGGSCGGG---GGG-GGGSTTCEEEEEEECBGGGBCCGGGHHHHHHHHHCCCCCTTC
T ss_pred HHHHHHHHHHHHhCCCc-eEEechHHcCHHH---hhh-cccccCcEEEEEcCccCCCCCCHHHHHHHHHHhhccccccCC
Confidence 46799999998888884 4321100111111 000 111122 233332221 122333334444454 35678
Q ss_pred CeEEEEecCCcc
Q 042295 157 GVLIIGSGSATH 168 (264)
Q Consensus 157 ~v~iIaSG~lsH 168 (264)
+++|+|+|+.+-
T Consensus 108 ~~avfGlGd~~Y 119 (618)
T 3qe2_A 108 KFAVFGLGNKTY 119 (618)
T ss_dssp EEEEEEEECTTS
T ss_pred EEEEEeCCCCCc
Confidence 999999999875
No 42
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=21.56 E-value=1.7e+02 Score=24.18 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC---C-----C-hHHHHHHHHHh
Q 042295 80 APGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE---K-----D-GTYHYNVGKAL 150 (264)
Q Consensus 80 ~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~---~-----~-~~~~~~lG~aL 150 (264)
...+++.-..+.+.+.+.++|-+.... .+... +..-...+..+|||.+.-... . | .+-.+..++.|
T Consensus 65 ~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~~~--~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L 139 (305)
T 3huu_A 65 SENSGDLYHEVKTMIQSKSVDGFILLY---SLKDD--PIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYL 139 (305)
T ss_dssp CSSHHHHHHHHHHHHHTTCCSEEEESS---CBTTC--HHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCCEEEEeC---CcCCc--HHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHH
Confidence 445666667778888777776222111 11100 221122346899998876531 1 2 34556666777
Q ss_pred cccccCCeEEEEec
Q 042295 151 APLKDEGVLIIGSG 164 (264)
Q Consensus 151 ~~~~d~~v~iIaSG 164 (264)
.+...++|++|+.-
T Consensus 140 ~~~G~~~I~~i~~~ 153 (305)
T 3huu_A 140 YHLGHRHILFLQES 153 (305)
T ss_dssp HHTTCCSEEEEEES
T ss_pred HHCCCCeEEEEcCC
Confidence 77677899999653
No 43
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=21.31 E-value=48 Score=26.10 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEEEec
Q 042295 85 DLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSG 164 (264)
Q Consensus 85 elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iIaSG 164 (264)
+|-+.|.+.|++.|.+ + .|.|+...= ..-|+ |.-..++++++. -.|++|+|=|||
T Consensus 20 ~lK~~i~~~L~~~G~e-V-------~D~G~~~~~----~~~dY------------pd~a~~va~~V~-~~d~GIliCGTG 74 (148)
T 4em8_A 20 ELRLFLSAYLRDLGCE-V-------FDCGCDPKE----HSVDY------------PDYVHDVVREVS-DTSFGVLICGTG 74 (148)
T ss_dssp HHHHHHHHHHHHTTCE-E-------EECCCCTTC----SCCCG------------GGGTHHHHTTCB-TTBEEEEEESSS
T ss_pred HHHHHHHHHHHHCCCE-E-------EEeCCCCCC----CCCCh------------HHHHHHHHHHHH-HhCeEEEEccCc
Confidence 5788999999999983 5 355552110 00011 233467777777 347789999999
No 44
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.30 E-value=1.8e+02 Score=21.71 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCCcccccCCCCCcceeEeecccccc---CCCCCeeeeeCCCCCChHHHHHHHHHhcccccCCeEEEEec
Q 042295 88 KRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYP---EANIPVCQLSLQPEKDGTYHYNVGKALAPLKDEGVLIIGSG 164 (264)
Q Consensus 88 ~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p---~~diPVV~is~~~~~~~~~~~~lG~aL~~~~d~~v~iIaSG 164 (264)
.-+...|+..|++ + +|=|..+|..-+-. +.+.-+|-+|.....+....-++=+.|++..-+++.|+..|
T Consensus 21 ~~v~~~l~~~G~~-V-------i~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 21 KILDHAFTNAGFN-V-------VNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHHHHHHTTCE-E-------EEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHHHHCCCE-E-------EECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 4455677888995 5 35677788655432 24778999998765556666667777766532246666667
Q ss_pred CC
Q 042295 165 SA 166 (264)
Q Consensus 165 ~l 166 (264)
..
T Consensus 93 ~~ 94 (137)
T 1ccw_A 93 NI 94 (137)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 45
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.29 E-value=2.3e+02 Score=23.00 Aligned_cols=74 Identities=12% Similarity=-0.034 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCC-CCC--------ChHHHHHHHHH
Q 042295 79 PAPGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQ-PEK--------DGTYHYNVGKA 149 (264)
Q Consensus 79 ~~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~-~~~--------~~~~~~~lG~a 149 (264)
...++++.-..+.+.+.+.++|-+.... +..-...+..+|||.+.-. ... +.+-.+..++.
T Consensus 48 ~~~~~~~~~~~~~~~l~~~~vdgiIi~~----------~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~ 117 (277)
T 3hs3_A 48 STNSDVKKYQNAIINFENNNVDGIITSA----------FTIPPNFHLNTPLVMYDSANINDDIVRIVSNNTKGGKESIKL 117 (277)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCSEEEEEC----------CCCCTTCCCSSCEEEESCCCCCSSSEEEEECHHHHHHHHHHT
T ss_pred eCCCChHHHHHHHHHHHhCCCCEEEEcc----------hHHHHHHhCCCCEEEEcccccCCCCEEEEEChHHHHHHHHHH
Confidence 3455777777777888777776222111 1111223467888877654 221 23556777777
Q ss_pred hcccccCCeEEEEe
Q 042295 150 LAPLKDEGVLIIGS 163 (264)
Q Consensus 150 L~~~~d~~v~iIaS 163 (264)
|. ...++|++|+.
T Consensus 118 L~-~G~~~I~~i~~ 130 (277)
T 3hs3_A 118 LS-KKIEKVLIQHW 130 (277)
T ss_dssp SC-TTCCEEEEEES
T ss_pred HH-hCCCEEEEEeC
Confidence 77 66788999864
No 46
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.22 E-value=2.4e+02 Score=20.38 Aligned_cols=74 Identities=12% Similarity=0.035 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCC---CChH-HHHHHHHHhcc-cccCCe
Q 042295 84 PDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPE---KDGT-YHYNVGKALAP-LKDEGV 158 (264)
Q Consensus 84 ~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~---~~~~-~~~~lG~aL~~-~~d~~v 158 (264)
..+|+.|.+.+.+.|++ +....-...|- .-+ .+...|-+..+.. ..|. ...++=+.|.. +.++++
T Consensus 13 ~~iA~~ia~~l~~~g~~-v~~~~~~~~~~------~~l---~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~ 82 (138)
T 5nul_A 13 EKMAELIAKGIIESGKD-VNTINVSDVNI------DEL---LNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKV 82 (138)
T ss_dssp HHHHHHHHHHHHHTTCC-CEEEEGGGCCH------HHH---TTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEE
T ss_pred HHHHHHHHHHHHHCCCe-EEEEEhhhCCH------HHH---hhCCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEE
Confidence 46789999999988874 43210000010 001 1233333333322 1232 33444344544 678899
Q ss_pred EEEEecCCc
Q 042295 159 LIIGSGSAT 167 (264)
Q Consensus 159 ~iIaSG~ls 167 (264)
+++||++.+
T Consensus 83 ~~f~t~g~~ 91 (138)
T 5nul_A 83 ALFGSYGWG 91 (138)
T ss_dssp EEEEEESSS
T ss_pred EEEEecCCC
Confidence 999998753
No 47
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.85 E-value=2.1e+02 Score=23.24 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccCCCCCcceeEeeccccccCCCCCeeeeeCCCCC---------C-hHHHHHHHHH
Q 042295 80 APGAPDLAKRVKELLRTSGFNHVKEDTKRGLDHGAWTPLMLMYPEANIPVCQLSLQPEK---------D-GTYHYNVGKA 149 (264)
Q Consensus 80 ~~g~~elA~~i~~~l~~~gid~~~~~~~~~lDHG~~vPL~~l~p~~diPVV~is~~~~~---------~-~~~~~~lG~a 149 (264)
...+++....+.+.+.+.++|-+...... .+. +..-...+..+|||.+.-.... | .+..+..++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~vdgiIi~~~~-~~~----~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~ 125 (292)
T 3k4h_A 51 GETEEEIFNGVVKMVQGRQIGGIILLYSR-END----RIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEY 125 (292)
T ss_dssp CCSHHHHHHHHHHHHHTTCCCEEEESCCB-TTC----HHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCC-CCh----HHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHH
Confidence 34466666777777777777622111111 111 1111123468888887654221 1 2445666666
Q ss_pred hcccccCCeEEEEec
Q 042295 150 LAPLKDEGVLIIGSG 164 (264)
Q Consensus 150 L~~~~d~~v~iIaSG 164 (264)
|.+...++|++|+..
T Consensus 126 L~~~G~~~i~~i~~~ 140 (292)
T 3k4h_A 126 LISLGHKQIAFIGGG 140 (292)
T ss_dssp HHHTTCCCEEEEESC
T ss_pred HHHCCCceEEEEeCc
Confidence 766667899999753
Done!