BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042296
(1446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 43/232 (18%)
Query: 272 DDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVV-AIMGTVPAYPLKE-LSDEDCLN 329
DDVW+ W+ +A +I++TTR+++V ++MG P++ L E L
Sbjct: 243 DDVWDS----WV-----LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 293
Query: 330 VFTQHSLGTRDFNMHKS-LEEIGKKIVIKCNGLPLAAKTLGGLLRG----------KTDQ 378
+ + NM K+ L E I+ +C G PL +G LLR +
Sbjct: 294 ILSLF------VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQN 347
Query: 379 RDWEDVLNCKIWDLPEERCDILPALKVSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILL 438
+ ++ + +D E D A+ +S L +K +T S+L KD + + + +L
Sbjct: 348 KQFKRIRKSSSYDY--EALD--EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCIL 403
Query: 439 WIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSSNDTLRFVMHDLVNDL 490
W E+E++ + + ++ LF + + R+ +HDL D
Sbjct: 404 W-----------DMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 43/232 (18%)
Query: 272 DDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVV-AIMGTVPAYPLKE-LSDEDCLN 329
DDVW+ W+ +A +I++TTR+++V ++MG P++ L E L
Sbjct: 249 DDVWDS----WV-----LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 299
Query: 330 VFTQHSLGTRDFNMHKS-LEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNC- 387
+ + NM K+ L E I+ +C G PL +G LLR ++ WE L
Sbjct: 300 ILSLF------VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEYYLKQL 351
Query: 388 ---------KIWDLPEERCDILPALKVSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILL 438
K E D A+ +S L +K +T S+L KD + + + +L
Sbjct: 352 QNKQFKRIRKSSSYDYEALD--EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCIL 409
Query: 439 WIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSSNDTLRFVMHDLVNDL 490
W E+E++ + + ++ LF + + R+ +HDL D
Sbjct: 410 W-----------DMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 96/232 (41%), Gaps = 43/232 (18%)
Query: 272 DDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVV-AIMGTVPAYPLKE-LSDEDCLN 329
DDVW+ W+ +A +I++TTR+++V ++MG P++ L E L
Sbjct: 243 DDVWDP----WV-----LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLE 293
Query: 330 VFTQHSLGTRDFNMHKS-LEEIGKKIVIKCNGLPLAAKTLGGLLRG----------KTDQ 378
+ + NM K L I+ +C G PL +G LLR +
Sbjct: 294 ILSLF------VNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQN 347
Query: 379 RDWEDVLNCKIWDLPEERCDILPALKVSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILL 438
+ ++ + +D E D A+ +S L +K +T S+L KD + + + +L
Sbjct: 348 KQFKRIRKSSSYDY--EALD--EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVL 403
Query: 439 WIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSSNDTLRFVMHDLVNDL 490
W E+E++ + + ++ LF + + + +HDL D
Sbjct: 404 W-----------DLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 957 EIANIDELTYIWQNETRLLQDISSLKRLK---IKSCPNLQSLVEEDEQNQLGLSCRIEYL 1013
+ A ++ LT L I+SL RL+ I++CP L L E E+
Sbjct: 125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST----DASGEHQ 180
Query: 1014 ELINCQ-------GLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYC 1066
L+N Q G+ LP S++ + +LK + I N P +L + ++ C
Sbjct: 181 GLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 1067 NALKSLPVTWMHDTNTSLETLKVYGC-NLLTYITSVQLPASLKHVEIEDCSNLRTL 1121
AL++ P + L+ L + C NLLT + L+ +++ C NL L
Sbjct: 240 TALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 14/175 (8%)
Query: 1082 TSLETLKVYGCNLLTYITSVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHL 1141
LETL + L S+ L+ + I C L L E + S EH
Sbjct: 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG------EHQ 180
Query: 1142 RIVNCQSL-ITLFSKNELPDSLEHLEVGICSKLK--FLSCSG----NLPQALKFICVFRC 1194
+VN QSL + LP S+ +L+ K++ LS G +LP+ L+ + + C
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK-LEELDLRGC 239
Query: 1195 SKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFP 1249
+ L + L+ + C NL LP +H+L L+++ + C NL P
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 30/161 (18%)
Query: 1031 LINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVY 1090
LIN E+ + N +L P+ LP Q+ ++ I NAL SLP + SLE L
Sbjct: 57 LINQFSELQL-NRLNLSSLPDN-LPPQITVLEITQ-NALISLP-----ELPASLEYLDAC 108
Query: 1091 GCNLLTYITSVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLI 1150
L T +LPASLKH+++ D + L L E +LLE++ N Q
Sbjct: 109 DNRLSTL---PELPASLKHLDV-DNNQLTXLPEL----------PALLEYINADNNQ--- 151
Query: 1151 TLFSKNELPDSLEHLEVGICSKLKFLSCSGNLPQALKFICV 1191
L ELP SLE L V ++L FL LP++L+ + V
Sbjct: 152 -LTXLPELPTSLEVLSVR-NNQLTFLP---ELPESLEALDV 187
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 518 LRHLSYIPGGHDGVKRFADFDDTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFS 577
L L ++ H +K+ ++F LR + + +S+ I L L LK+ +
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM-A 477
Query: 578 LCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLE-----DCDRLK 631
+Q + LP+ +LR L +L+LS+ +E L P + N L +L L + D
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Query: 632 KLCADMGNLI--KLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLK 687
C + ++ L+H+ S L+ P + L Q +FA + S LQ +K
Sbjct: 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN--DFACTCEHQSFLQWIK 593
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 11 ASIELLVNKLASEGLRFFARQEQILADLMKWKKMLMKINVVLDDADE--RQRTDKSVKLW 68
A+I L+ KL F + + ++ K L N L E R++ D KLW
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLW 60
Query: 69 LGELQNLAYDVEDLLDEFETEALGRK 94
E++ L+Y +ED++D+F + G K
Sbjct: 61 ADEVRELSYVIEDVVDKFLVQVDGIK 86
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 43/232 (18%)
Query: 272 DDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVV-AIMGTVPAYPLKE-LSDEDCLN 329
DDVW+ W+ +A +I++TT +++V ++MG P++ L E L
Sbjct: 250 DDVWDP----WV-----LKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLE 300
Query: 330 VFTQHSLGTRDFNMHKS-LEEIGKKIVIKCNGLPLAAKTLGGLLRG----------KTDQ 378
+ + NM K L I+ +C G PL +G LLR +
Sbjct: 301 ILSLF------VNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQN 354
Query: 379 RDWEDVLNCKIWDLPEERCDILPALKVSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILL 438
+ ++ + +D E D A+ +S L +K +T S+L KD + + + +L
Sbjct: 355 KQFKRIRKSSSYDY--EALD--EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVL 410
Query: 439 WIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSSNDTLRFVMHDLVNDL 490
W E+E++ + + ++ LF + + + +HDL D
Sbjct: 411 W-----------DLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 518 LRHLSYIPGGHDGVKRFADFDDTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFS 577
L L ++ H +K+ ++F LR + + +S+ I L L LK+ +
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM-A 158
Query: 578 LCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLE-----DCDRLK 631
+Q + LP+ +LR L +L+LS+ +E L P + N L +L L + D
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Query: 632 KLCADMGNLI--KLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLK 687
C + ++ L+H+ S L+ P + L Q +FA + S LQ +K
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN--DFACTCEHQSFLQWIK 274
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 518 LRHLSYIPGGHDGVKRFADFDDTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFS 577
L L ++ H +K+ ++F LR + + +S+ I L L LK+ +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM-A 453
Query: 578 LCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLE-----DCDRLK 631
+Q + LP+ +LR L +L+LS+ +E L P + N L +L L + D
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 632 KLCADMGNLI--KLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLK 687
C + ++ L+H+ S L+ P + L Q +FA + S LQ +K
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN--DFACTCEHQSFLQWIK 569
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 21/157 (13%)
Query: 1051 EAALPSQLRIIS---IQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYITSVQLPASL 1107
E +PS ++ ++ Y LK + +T T+L YG L I + S+
Sbjct: 198 EFTIPSTVKTVTAYGFSYGKNLKKITIT---SGVTTLGDGAFYGXKALDEIAIPKNVTSI 254
Query: 1108 KHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHLEV 1167
+++C+ L+TL ++ + +L C +L + N ++LE
Sbjct: 255 GSFLLQNCTALKTLNFYAKVKT--------VPYLLCSGCSNLTKVVXDNSAIETLEPRVF 306
Query: 1168 GICSKLKFLSCSGNLPQALKFICVF---RCSKLESIA 1201
C KL S LP ALK I V+ C L +I+
Sbjct: 307 XDCVKLS----SVTLPTALKTIQVYAFKNCKALSTIS 339
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 547 LPVMLSNCWGGYLAYSILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCI 606
+P LSNC L+ LH L L G +P+S+G L LR L L +
Sbjct: 410 IPPTLSNC----------SELVSLH-LSFNYLSG----TIPSSLGSLSKLRDLKLWLNML 454
Query: 607 EI-LPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEMPRGIGKLT 665
E +P + + L TL+L+ D ++ + + N L+ ++ S E+P+ IG+L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 666 FLQTL 670
L L
Sbjct: 515 NLAIL 519
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 547 LPVMLSNCWGGYLAYSILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCI 606
+P LSNC L+ LH L L G +P+S+G L LR L L +
Sbjct: 407 IPPTLSNC----------SELVSLH-LSFNYLSG----TIPSSLGSLSKLRDLKLWLNML 451
Query: 607 EI-LPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEMPRGIGKLT 665
E +P + + L TL+L+ D ++ + + N L+ ++ S E+P+ IG+L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 666 FLQTL 670
L L
Sbjct: 512 NLAIL 516
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 1269 LEALPEGMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKI-WKSLMEWGEGG 1327
+ +P G + ++N+ LA +V + DG +P +L D H T I ++ WG GG
Sbjct: 166 MRIIPPGSGIIHQVNLEYLARVV---FDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGG 222
Query: 1328 L 1328
+
Sbjct: 223 I 223
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 28/155 (18%)
Query: 518 LRHLSYIPGGHDGVKRFADFDDTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFS 577
L L ++ H +K+ ++F LR + + +S+ I L L LK+ +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM-A 453
Query: 578 LCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCAD 636
+Q + LP+ +LR L +L+LS+ +E L P + N L +L L
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL-------------- 499
Query: 637 MGNLIKLHHLNNSTTNSLEEMPRGI-GKLTFLQTL 670
N +N L+ +P GI +LT LQ +
Sbjct: 500 -----------NMASNQLKSVPDGIFDRLTSLQKI 523
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 569 KLHRLKVFSLCGYQISELPNSV-GDLRYLRYLNLSRTCIEILPDSI-NKLYNLHTLLLED 626
+L L L G ++ LPN V L L YLNLS ++ LP+ + +KL L L L +
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-N 108
Query: 627 CDRLKKLCADMGNLIKLHHLNNST--TNSLEEMPRGI-GKLTFLQ 668
++L+ L G KL L + N L+ +P G+ +LT LQ
Sbjct: 109 TNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,268,060
Number of Sequences: 62578
Number of extensions: 1768695
Number of successful extensions: 3786
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3757
Number of HSP's gapped (non-prelim): 58
length of query: 1446
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1335
effective length of database: 8,027,179
effective search space: 10716283965
effective search space used: 10716283965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)