Query 042296
Match_columns 1446
No_of_seqs 759 out of 5808
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.4E-81 9.6E-86 772.2 47.7 669 26-728 18-726 (889)
2 PLN03210 Resistant to P. syrin 100.0 8E-59 1.7E-63 613.3 46.9 668 183-967 205-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-39 2.6E-44 370.4 10.3 260 185-447 19-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 3E-34 6.5E-39 383.4 24.8 496 561-1274 83-589 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.1E-33 2.3E-38 378.0 24.2 530 517-1267 70-605 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 1.7E-26 3.7E-31 242.1 -15.0 245 562-915 59-308 (565)
7 PLN03210 Resistant to P. syrin 99.9 9.9E-22 2.1E-26 261.1 22.8 311 1034-1375 590-909 (1153)
8 KOG0618 Serine/threonine phosp 99.9 2.1E-24 4.6E-29 250.6 -5.3 244 1006-1316 239-488 (1081)
9 KOG4194 Membrane glycoprotein 99.9 2.8E-22 6E-27 220.3 5.0 357 573-1064 80-447 (873)
10 KOG0618 Serine/threonine phosp 99.8 4.8E-23 1E-27 239.4 -3.7 99 570-670 44-142 (1081)
11 KOG0444 Cytoskeletal regulator 99.8 1.4E-22 3E-27 223.5 -6.2 314 516-896 55-375 (1255)
12 KOG4194 Membrane glycoprotein 99.8 4.8E-21 1E-25 210.6 5.1 377 574-1091 55-448 (873)
13 KOG0444 Cytoskeletal regulator 99.8 3.9E-22 8.5E-27 219.9 -5.5 366 570-1074 6-380 (1255)
14 KOG0472 Leucine-rich repeat pr 99.8 1.2E-22 2.6E-27 213.5 -9.6 228 560-813 80-308 (565)
15 PRK15387 E3 ubiquitin-protein 99.5 6.3E-13 1.4E-17 162.7 15.9 114 1257-1394 343-456 (788)
16 PRK15387 E3 ubiquitin-protein 99.4 1.2E-12 2.6E-17 160.3 13.3 254 571-915 201-456 (788)
17 KOG4237 Extracellular matrix p 99.4 1.5E-14 3.3E-19 153.1 -5.0 101 574-675 70-174 (498)
18 KOG4237 Extracellular matrix p 99.3 2.4E-14 5.3E-19 151.7 -5.0 125 560-686 79-209 (498)
19 KOG0617 Ras suppressor protein 99.3 2.5E-14 5.5E-19 133.1 -4.7 108 562-670 47-155 (264)
20 PRK15370 E3 ubiquitin-protein 99.3 4E-12 8.6E-17 157.2 9.2 179 571-813 178-357 (754)
21 KOG0617 Ras suppressor protein 99.3 1.4E-13 3.1E-18 128.2 -3.3 104 566-670 28-132 (264)
22 PRK15370 E3 ubiquitin-protein 99.2 2.8E-11 6E-16 149.8 9.1 178 572-813 200-378 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.2 2.9E-11 6.2E-16 152.1 7.5 104 569-673 543-650 (889)
24 PRK04841 transcriptional regul 99.1 1.8E-09 3.9E-14 144.5 23.7 273 187-495 34-332 (903)
25 TIGR03015 pepcterm_ATPase puta 98.9 5.1E-08 1.1E-12 109.6 19.3 179 188-372 46-242 (269)
26 PRK15386 type III secretion pr 98.8 1.6E-08 3.4E-13 113.4 9.9 174 1204-1428 48-222 (426)
27 PRK00411 cdc6 cell division co 98.8 4.5E-07 9.7E-12 108.1 21.7 271 188-473 58-357 (394)
28 cd00116 LRR_RI Leucine-rich re 98.7 1.2E-09 2.6E-14 126.9 -2.5 84 569-652 21-119 (319)
29 PF05729 NACHT: NACHT domain 98.7 6.5E-08 1.4E-12 99.9 9.9 142 187-335 2-163 (166)
30 KOG0532 Leucine-rich repeat (L 98.7 1.3E-09 2.7E-14 122.0 -3.3 180 561-812 88-270 (722)
31 cd00116 LRR_RI Leucine-rich re 98.7 1.7E-09 3.7E-14 125.6 -3.5 90 563-652 43-148 (319)
32 TIGR02928 orc1/cdc6 family rep 98.6 5.1E-06 1.1E-10 98.0 23.5 274 188-474 43-350 (365)
33 KOG4341 F-box protein containi 98.6 1.8E-09 3.9E-14 116.5 -5.2 283 1058-1348 140-442 (483)
34 PF14580 LRR_9: Leucine-rich r 98.5 6.1E-08 1.3E-12 97.2 4.0 109 565-676 35-151 (175)
35 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.5E-12 113.4 4.9 103 566-670 111-214 (394)
36 PRK06893 DNA replication initi 98.4 1.1E-06 2.3E-11 94.8 11.5 150 188-369 42-204 (229)
37 PRK15386 type III secretion pr 98.4 6.1E-07 1.3E-11 100.8 9.3 136 1229-1416 49-187 (426)
38 KOG4341 F-box protein containi 98.4 9.4E-09 2E-13 111.1 -5.8 285 781-1099 140-443 (483)
39 COG2909 MalT ATP-dependent tra 98.4 1.4E-05 3.1E-10 95.6 18.6 275 187-496 39-339 (894)
40 COG3903 Predicted ATPase [Gene 98.4 7.8E-07 1.7E-11 97.9 7.6 291 185-496 14-315 (414)
41 PF14580 LRR_9: Leucine-rich r 98.3 1.7E-07 3.7E-12 94.0 2.2 98 569-670 17-118 (175)
42 PRK00080 ruvB Holliday junctio 98.3 6.6E-06 1.4E-10 94.5 15.1 250 187-475 53-311 (328)
43 KOG0532 Leucine-rich repeat (L 98.3 3.2E-08 7E-13 111.0 -4.2 171 570-813 74-245 (722)
44 TIGR00635 ruvB Holliday juncti 98.2 2.2E-05 4.8E-10 89.8 16.8 247 188-474 33-289 (305)
45 KOG1259 Nischarin, modulator o 98.2 1.7E-07 3.6E-12 96.5 -0.6 99 568-670 281-379 (490)
46 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.4E-11 72.1 4.0 56 572-627 2-59 (61)
47 PF13401 AAA_22: AAA domain; P 98.2 3.1E-06 6.8E-11 83.0 6.8 115 187-304 6-125 (131)
48 PLN03150 hypothetical protein; 98.2 1.7E-06 3.6E-11 107.9 5.7 93 572-664 419-513 (623)
49 PF01637 Arch_ATPase: Archaeal 98.2 8.3E-06 1.8E-10 89.8 10.4 175 187-367 22-233 (234)
50 COG2256 MGS1 ATPase related to 98.1 1.2E-05 2.5E-10 88.0 10.4 150 187-363 50-207 (436)
51 cd01128 rho_factor Transcripti 98.1 2.7E-06 5.9E-11 91.4 5.6 88 187-275 18-113 (249)
52 KOG3207 Beta-tubulin folding c 98.1 1.3E-06 2.9E-11 95.4 2.8 128 537-670 142-276 (505)
53 PF13855 LRR_8: Leucine rich r 98.1 2.9E-06 6.2E-11 69.6 3.9 58 594-652 1-60 (61)
54 COG4886 Leucine-rich repeat (L 98.1 2.5E-06 5.4E-11 101.9 4.5 108 561-670 129-237 (394)
55 PTZ00112 origin recognition co 98.1 0.00029 6.4E-09 85.3 21.4 270 189-475 785-1087(1164)
56 PLN03150 hypothetical protein; 98.0 3.8E-06 8.2E-11 104.7 5.5 101 558-658 429-532 (623)
57 KOG3207 Beta-tubulin folding c 98.0 6.6E-07 1.4E-11 97.8 -1.1 62 591-652 118-183 (505)
58 PF13173 AAA_14: AAA domain 98.0 1.2E-05 2.5E-10 78.0 7.4 118 187-327 4-127 (128)
59 TIGR03420 DnaA_homol_Hda DnaA 98.0 3.4E-05 7.3E-10 84.1 11.1 151 188-370 41-203 (226)
60 KOG1259 Nischarin, modulator o 98.0 1.9E-06 4.1E-11 88.9 1.0 107 561-671 297-405 (490)
61 PRK09376 rho transcription ter 98.0 1E-05 2.2E-10 90.1 6.6 85 189-274 173-265 (416)
62 PRK08727 hypothetical protein; 97.9 0.00014 3E-09 78.7 13.0 146 188-365 44-201 (233)
63 PF12799 LRR_4: Leucine Rich r 97.9 9.7E-06 2.1E-10 60.3 2.8 38 572-609 2-39 (44)
64 PRK09087 hypothetical protein; 97.9 0.00015 3.3E-09 77.5 13.0 137 188-367 47-194 (226)
65 PRK13342 recombination factor 97.8 0.00013 2.8E-09 86.6 12.4 153 188-369 39-197 (413)
66 KOG2120 SCF ubiquitin ligase, 97.8 7.8E-07 1.7E-11 91.9 -5.5 60 754-815 286-351 (419)
67 PRK05564 DNA polymerase III su 97.8 0.00041 8.9E-09 79.2 15.2 152 189-366 30-188 (313)
68 PF12799 LRR_4: Leucine Rich r 97.7 2.3E-05 5E-10 58.3 3.0 40 594-634 1-40 (44)
69 TIGR02903 spore_lon_C ATP-depe 97.7 0.0027 5.9E-08 78.6 22.5 180 187-371 177-398 (615)
70 PRK06645 DNA polymerase III su 97.7 0.0004 8.7E-09 82.7 13.7 97 263-363 126-224 (507)
71 PRK08084 DNA replication initi 97.7 0.00034 7.4E-09 75.7 12.1 149 188-368 48-209 (235)
72 TIGR00767 rho transcription te 97.7 5.5E-05 1.2E-09 84.9 6.0 87 188-275 171-265 (415)
73 KOG0531 Protein phosphatase 1, 97.7 1.3E-05 2.9E-10 95.6 1.2 102 565-670 89-191 (414)
74 PRK14963 DNA polymerase III su 97.7 9.3E-05 2E-09 88.6 8.3 177 189-370 40-220 (504)
75 PRK14961 DNA polymerase III su 97.6 0.00092 2E-08 77.8 15.6 97 264-364 118-216 (363)
76 TIGR00678 holB DNA polymerase 97.6 0.00089 1.9E-08 70.1 14.1 90 264-363 95-186 (188)
77 KOG2120 SCF ubiquitin ligase, 97.6 5.9E-06 1.3E-10 85.6 -2.9 149 1189-1342 215-373 (419)
78 PRK05642 DNA replication initi 97.6 0.00053 1.2E-08 74.1 11.6 150 188-369 48-209 (234)
79 cd00009 AAA The AAA+ (ATPases 97.6 0.00028 6.1E-09 71.1 8.9 104 187-305 21-130 (151)
80 KOG4579 Leucine-rich repeat (L 97.5 2E-05 4.4E-10 72.0 0.3 96 563-660 45-141 (177)
81 PF00308 Bac_DnaA: Bacterial d 97.5 0.00092 2E-08 71.3 12.1 155 188-367 37-207 (219)
82 KOG2028 ATPase related to the 97.5 0.00083 1.8E-08 72.0 11.2 124 188-334 165-293 (554)
83 COG3899 Predicted ATPase [Gene 97.5 0.0014 3.1E-08 84.1 15.2 210 263-492 152-383 (849)
84 KOG0531 Protein phosphatase 1, 97.4 1.8E-05 3.8E-10 94.5 -1.8 98 569-670 70-167 (414)
85 PRK12323 DNA polymerase III su 97.4 0.0011 2.3E-08 79.4 12.7 100 263-366 122-223 (700)
86 PRK14949 DNA polymerase III su 97.4 0.0012 2.7E-08 81.6 13.5 102 263-368 117-221 (944)
87 PRK14957 DNA polymerase III su 97.4 0.0015 3.2E-08 78.5 13.6 104 263-370 117-223 (546)
88 PRK07003 DNA polymerase III su 97.4 0.0012 2.5E-08 80.1 12.6 102 264-369 118-222 (830)
89 PRK08903 DnaA regulatory inact 97.4 0.0011 2.3E-08 72.1 11.3 149 188-372 45-203 (227)
90 PRK14087 dnaA chromosomal repl 97.4 0.0023 5E-08 76.1 14.9 164 187-369 143-320 (450)
91 PLN03025 replication factor C 97.4 0.0012 2.6E-08 75.6 12.0 154 189-362 38-194 (319)
92 KOG1909 Ran GTPase-activating 97.4 9.9E-06 2.2E-10 86.5 -4.8 87 566-652 25-131 (382)
93 PRK04195 replication factor C 97.4 0.0054 1.2E-07 74.5 17.9 220 187-447 41-271 (482)
94 CHL00181 cbbX CbbX; Provisiona 97.3 0.0097 2.1E-07 66.3 18.4 132 188-336 62-210 (287)
95 PRK13341 recombination factor 97.3 0.0011 2.3E-08 82.9 11.9 144 188-362 55-211 (725)
96 PRK14960 DNA polymerase III su 97.3 0.0021 4.6E-08 77.1 13.5 99 263-365 116-216 (702)
97 PRK14956 DNA polymerase III su 97.3 0.00033 7.3E-09 81.4 6.6 97 263-363 119-217 (484)
98 PRK14962 DNA polymerase III su 97.3 0.0024 5.2E-08 76.0 13.6 105 264-372 116-223 (472)
99 PF05496 RuvB_N: Holliday junc 97.3 0.002 4.4E-08 66.2 11.0 153 187-372 52-225 (233)
100 PRK12402 replication factor C 97.3 0.0021 4.6E-08 75.0 13.0 98 264-365 124-223 (337)
101 PRK06620 hypothetical protein; 97.3 0.0021 4.6E-08 68.1 11.5 132 188-364 47-185 (214)
102 TIGR02880 cbbX_cfxQ probable R 97.2 0.0081 1.7E-07 67.0 16.3 131 188-335 61-208 (284)
103 PRK14088 dnaA chromosomal repl 97.2 0.0027 5.9E-08 75.5 13.2 152 187-362 132-299 (440)
104 COG1474 CDC6 Cdc6-related prot 97.2 0.01 2.3E-07 68.1 17.4 177 188-369 45-239 (366)
105 PRK07940 DNA polymerase III su 97.2 0.0043 9.4E-08 71.9 14.4 96 264-368 116-213 (394)
106 PRK12422 chromosomal replicati 97.2 0.0022 4.9E-08 75.8 12.2 151 187-360 143-305 (445)
107 TIGR00362 DnaA chromosomal rep 97.2 0.0033 7.1E-08 74.9 13.5 154 188-364 139-306 (405)
108 KOG1909 Ran GTPase-activating 97.2 0.0001 2.2E-09 78.9 0.7 63 566-628 53-131 (382)
109 KOG4579 Leucine-rich repeat (L 97.2 3.8E-05 8.2E-10 70.3 -2.5 97 572-670 28-128 (177)
110 PRK14964 DNA polymerase III su 97.2 0.005 1.1E-07 72.9 14.0 97 264-364 115-213 (491)
111 PRK07471 DNA polymerase III su 97.1 0.0082 1.8E-07 69.1 15.2 97 264-368 140-238 (365)
112 PRK07994 DNA polymerase III su 97.1 0.0031 6.8E-08 77.0 12.2 102 263-368 117-221 (647)
113 COG0593 DnaA ATPase involved i 97.1 0.0031 6.6E-08 71.9 11.0 241 187-474 115-372 (408)
114 TIGR02881 spore_V_K stage V sp 97.1 0.01 2.2E-07 65.7 15.0 133 187-336 44-192 (261)
115 TIGR02397 dnaX_nterm DNA polym 97.1 0.01 2.2E-07 69.7 15.9 101 264-368 116-218 (355)
116 PRK14958 DNA polymerase III su 97.1 0.005 1.1E-07 74.2 13.2 98 264-365 118-217 (509)
117 PRK14951 DNA polymerase III su 97.1 0.006 1.3E-07 74.4 13.8 98 264-365 123-222 (618)
118 PRK05896 DNA polymerase III su 97.0 0.0061 1.3E-07 73.3 13.6 102 265-370 119-223 (605)
119 TIGR01242 26Sp45 26S proteasom 97.0 0.004 8.6E-08 72.9 11.9 148 188-362 159-328 (364)
120 PRK14959 DNA polymerase III su 97.0 0.0084 1.8E-07 72.6 14.6 106 263-372 117-225 (624)
121 PRK14086 dnaA chromosomal repl 97.0 0.0064 1.4E-07 73.1 13.5 151 188-361 317-481 (617)
122 PRK00149 dnaA chromosomal repl 97.0 0.0038 8.3E-08 75.2 11.8 153 187-364 150-318 (450)
123 PRK09112 DNA polymerase III su 97.0 0.013 2.9E-07 67.0 15.3 101 263-369 139-241 (351)
124 PRK08691 DNA polymerase III su 97.0 0.0054 1.2E-07 74.5 12.4 98 264-365 118-217 (709)
125 PRK14969 DNA polymerase III su 97.0 0.0089 1.9E-07 72.7 14.4 103 263-369 117-222 (527)
126 PF05621 TniB: Bacterial TniB 97.0 0.011 2.4E-07 64.1 13.3 175 188-365 64-258 (302)
127 PRK08116 hypothetical protein; 97.0 0.0026 5.6E-08 70.1 8.8 102 188-305 117-221 (268)
128 PRK05707 DNA polymerase III su 97.0 0.013 2.8E-07 66.4 14.6 97 264-368 105-203 (328)
129 PRK00440 rfc replication facto 96.9 0.01 2.2E-07 68.7 13.9 155 188-364 41-199 (319)
130 PRK09111 DNA polymerase III su 96.9 0.0092 2E-07 73.1 13.3 99 264-366 131-231 (598)
131 PF04665 Pox_A32: Poxvirus A32 96.8 0.0029 6.2E-08 66.9 7.6 35 188-224 16-50 (241)
132 PRK14955 DNA polymerase III su 96.8 0.0085 1.8E-07 70.7 12.5 101 264-368 126-229 (397)
133 COG5238 RNA1 Ran GTPase-activa 96.8 0.00012 2.6E-09 75.1 -2.6 94 563-657 22-135 (388)
134 PF00004 AAA: ATPase family as 96.8 0.0018 3.9E-08 63.5 5.7 20 189-208 2-21 (132)
135 KOG1947 Leucine rich repeat pr 96.8 0.00013 2.7E-09 90.6 -3.4 90 1006-1095 212-308 (482)
136 PRK11331 5-methylcytosine-spec 96.8 0.0025 5.4E-08 73.4 6.9 90 187-280 196-287 (459)
137 KOG1859 Leucine-rich repeat pr 96.8 7.4E-05 1.6E-09 87.0 -5.2 94 572-670 165-259 (1096)
138 PRK14954 DNA polymerase III su 96.8 0.023 4.9E-07 69.8 15.5 101 264-368 126-229 (620)
139 KOG1859 Leucine-rich repeat pr 96.7 0.00019 4.2E-09 83.7 -2.3 80 569-652 185-265 (1096)
140 smart00382 AAA ATPases associa 96.7 0.0055 1.2E-07 61.1 8.3 86 187-277 4-90 (148)
141 PRK14950 DNA polymerase III su 96.7 0.028 6.1E-07 69.7 15.9 100 264-367 119-220 (585)
142 PRK08118 topology modulation p 96.7 0.00076 1.6E-08 68.5 1.6 34 187-220 3-37 (167)
143 PRK07133 DNA polymerase III su 96.6 0.032 6.8E-07 68.9 15.4 102 264-369 117-221 (725)
144 KOG1947 Leucine rich repeat pr 96.6 0.00023 5E-09 88.2 -3.0 111 1159-1269 187-308 (482)
145 KOG3665 ZYG-1-like serine/thre 96.6 0.0012 2.5E-08 82.2 3.1 108 538-652 145-261 (699)
146 KOG3665 ZYG-1-like serine/thre 96.6 0.0008 1.7E-08 83.6 1.7 136 594-765 122-261 (699)
147 KOG0989 Replication factor C, 96.6 0.0082 1.8E-07 63.8 8.6 158 189-362 61-224 (346)
148 PRK08451 DNA polymerase III su 96.6 0.028 6E-07 67.4 14.2 100 264-367 116-217 (535)
149 KOG2982 Uncharacterized conser 96.6 0.00034 7.3E-09 73.0 -1.5 34 594-627 71-107 (418)
150 PRK14953 DNA polymerase III su 96.6 0.039 8.5E-07 66.2 15.5 99 263-365 117-217 (486)
151 PRK07764 DNA polymerase III su 96.6 0.021 4.6E-07 72.5 13.9 97 263-363 118-216 (824)
152 COG2255 RuvB Holliday junction 96.6 0.047 1E-06 57.6 13.7 63 298-364 155-219 (332)
153 PRK14971 DNA polymerase III su 96.5 0.032 6.8E-07 69.1 14.6 96 264-363 120-217 (614)
154 PRK14970 DNA polymerase III su 96.5 0.03 6.4E-07 65.9 13.9 102 264-369 107-211 (367)
155 PRK14952 DNA polymerase III su 96.5 0.034 7.4E-07 67.8 14.4 105 264-372 117-224 (584)
156 KOG2543 Origin recognition com 96.3 0.069 1.5E-06 58.8 13.9 140 188-334 33-192 (438)
157 PRK14948 DNA polymerase III su 96.3 0.069 1.5E-06 66.1 15.9 98 264-365 120-219 (620)
158 PRK08181 transposase; Validate 96.3 0.0076 1.6E-07 65.9 6.6 99 188-305 109-209 (269)
159 PRK03992 proteasome-activating 96.3 0.018 3.8E-07 67.6 10.0 149 187-362 167-337 (389)
160 PRK06647 DNA polymerase III su 96.2 0.079 1.7E-06 64.8 15.7 99 263-365 117-217 (563)
161 PF14516 AAA_35: AAA-like doma 96.2 0.1 2.2E-06 59.8 15.5 178 188-375 34-246 (331)
162 TIGR03689 pup_AAA proteasome A 96.2 0.027 5.9E-07 67.1 10.9 136 187-335 218-378 (512)
163 KOG2982 Uncharacterized conser 96.2 0.0016 3.4E-08 68.2 0.5 58 595-652 46-108 (418)
164 PF01695 IstB_IS21: IstB-like 96.1 0.0039 8.4E-08 63.9 3.3 98 188-305 50-150 (178)
165 PRK06305 DNA polymerase III su 96.1 0.064 1.4E-06 64.0 13.9 102 264-369 120-224 (451)
166 PRK12608 transcription termina 96.1 0.022 4.8E-07 64.2 9.1 85 188-274 136-229 (380)
167 PHA02544 44 clamp loader, smal 96.0 0.032 7E-07 64.2 10.6 122 189-333 47-171 (316)
168 PF13191 AAA_16: AAA ATPase do 96.0 0.013 2.9E-07 61.3 6.9 23 187-209 26-48 (185)
169 PRK08769 DNA polymerase III su 96.0 0.12 2.5E-06 58.2 14.3 96 264-369 112-209 (319)
170 PF00560 LRR_1: Leucine Rich R 95.9 0.0032 6.9E-08 38.7 1.0 19 596-614 2-20 (22)
171 COG1373 Predicted ATPase (AAA+ 95.9 0.042 9.1E-07 64.4 11.0 147 187-367 39-191 (398)
172 PRK09183 transposase/IS protei 95.9 0.014 3.1E-07 63.9 6.7 100 187-305 104-206 (259)
173 PRK14965 DNA polymerase III su 95.9 0.066 1.4E-06 66.1 13.1 102 264-369 118-222 (576)
174 PRK07952 DNA replication prote 95.9 0.014 3E-07 62.8 6.3 100 188-304 102-204 (244)
175 PRK06921 hypothetical protein; 95.8 0.021 4.5E-07 62.8 7.4 35 187-223 119-154 (266)
176 PRK06526 transposase; Provisio 95.8 0.015 3.3E-07 63.3 6.2 98 188-305 101-201 (254)
177 PF05673 DUF815: Protein of un 95.8 0.17 3.8E-06 53.2 13.3 95 188-308 55-154 (249)
178 PTZ00361 26 proteosome regulat 95.7 0.014 3.1E-07 68.3 6.0 128 188-336 220-368 (438)
179 PRK06090 DNA polymerase III su 95.7 0.17 3.6E-06 56.9 14.1 93 264-368 107-201 (319)
180 KOG1644 U2-associated snRNP A' 95.7 0.011 2.5E-07 58.7 4.2 99 570-671 41-146 (233)
181 PTZ00202 tuzin; Provisional 95.7 0.14 3E-06 58.2 13.1 137 186-334 287-433 (550)
182 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.029 6.2E-07 55.5 6.9 117 187-305 4-138 (159)
183 PRK09361 radB DNA repair and r 95.7 0.021 4.5E-07 61.9 6.7 43 187-232 25-67 (225)
184 PRK08939 primosomal protein Dn 95.7 0.023 5E-07 63.7 7.0 99 187-304 158-260 (306)
185 PRK07261 topology modulation p 95.7 0.02 4.4E-07 58.5 6.1 65 188-276 3-68 (171)
186 PRK04296 thymidine kinase; Pro 95.6 0.018 4E-07 60.0 5.8 112 188-306 5-117 (190)
187 KOG0741 AAA+-type ATPase [Post 95.6 0.13 2.8E-06 58.9 12.4 144 188-358 541-704 (744)
188 PRK07399 DNA polymerase III su 95.6 0.18 3.9E-06 57.0 14.0 97 263-367 122-220 (314)
189 TIGR02640 gas_vesic_GvpN gas v 95.6 0.13 2.8E-06 56.9 12.7 40 189-233 25-64 (262)
190 PRK05563 DNA polymerase III su 95.6 0.2 4.3E-06 61.7 15.3 98 263-364 117-216 (559)
191 PRK06835 DNA replication prote 95.5 0.011 2.3E-07 66.9 3.9 102 186-304 184-288 (329)
192 PRK12377 putative replication 95.5 0.021 4.5E-07 61.7 5.7 99 188-304 104-205 (248)
193 KOG2739 Leucine-rich acidic nu 95.5 0.0075 1.6E-07 62.9 2.2 103 570-676 42-154 (260)
194 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.028 6.1E-07 61.5 6.8 88 187-275 21-125 (235)
195 PF08423 Rad51: Rad51; InterP 95.5 0.021 4.6E-07 62.5 5.7 87 187-274 40-142 (256)
196 KOG2227 Pre-initiation complex 95.5 0.17 3.8E-06 57.4 12.6 149 188-337 178-340 (529)
197 PTZ00454 26S protease regulato 95.4 0.052 1.1E-06 63.3 9.2 150 187-362 181-351 (398)
198 PRK06871 DNA polymerase III su 95.4 0.25 5.5E-06 55.7 14.1 157 189-364 28-199 (325)
199 TIGR02237 recomb_radB DNA repa 95.4 0.029 6.3E-07 60.0 6.4 45 187-234 14-58 (209)
200 cd01133 F1-ATPase_beta F1 ATP 95.4 0.037 8E-07 60.0 7.1 85 188-274 72-172 (274)
201 PRK10536 hypothetical protein; 95.3 0.05 1.1E-06 58.0 7.7 114 187-305 76-213 (262)
202 CHL00176 ftsH cell division pr 95.2 0.12 2.7E-06 64.0 11.9 149 187-361 218-387 (638)
203 PRK12727 flagellar biosynthesi 95.2 0.46 1E-05 56.3 15.7 87 186-275 351-438 (559)
204 cd00983 recA RecA is a bacter 95.2 0.034 7.3E-07 62.1 6.3 82 187-275 57-143 (325)
205 COG3267 ExeA Type II secretory 95.1 0.48 1E-05 49.8 13.8 178 187-370 53-247 (269)
206 TIGR02012 tigrfam_recA protein 95.1 0.042 9E-07 61.4 6.5 82 187-275 57-143 (321)
207 PRK08058 DNA polymerase III su 95.0 0.24 5.2E-06 56.8 12.8 71 264-334 109-181 (329)
208 PRK09354 recA recombinase A; P 95.0 0.047 1E-06 61.5 6.8 82 187-275 62-148 (349)
209 PRK06964 DNA polymerase III su 95.0 0.34 7.4E-06 55.0 13.7 93 264-368 131-225 (342)
210 cd01393 recA_like RecA is a b 95.0 0.074 1.6E-06 57.7 8.3 86 187-275 21-124 (226)
211 COG0468 RecA RecA/RadA recombi 95.0 0.067 1.5E-06 58.3 7.6 86 187-275 62-151 (279)
212 COG1222 RPT1 ATP-dependent 26S 95.0 0.25 5.4E-06 54.3 11.6 160 187-373 187-372 (406)
213 PRK07993 DNA polymerase III su 95.0 0.14 2.9E-06 58.5 10.4 160 189-365 28-201 (334)
214 PF13177 DNA_pol3_delta2: DNA 94.9 0.19 4.1E-06 50.8 10.2 43 264-306 101-143 (162)
215 PF00560 LRR_1: Leucine Rich R 94.8 0.014 3E-07 35.9 1.0 22 572-593 1-22 (22)
216 KOG2123 Uncharacterized conser 94.7 0.0028 6.1E-08 65.7 -3.3 76 574-652 22-99 (388)
217 PRK05541 adenylylsulfate kinas 94.7 0.068 1.5E-06 55.2 6.8 34 187-222 9-42 (176)
218 TIGR01241 FtsH_fam ATP-depende 94.7 0.2 4.3E-06 61.3 11.9 149 188-362 91-260 (495)
219 KOG0473 Leucine-rich repeat pr 94.7 0.0023 5E-08 64.5 -3.9 85 567-652 38-122 (326)
220 PRK04132 replication factor C 94.6 0.55 1.2E-05 59.6 15.4 152 193-365 574-728 (846)
221 PRK05703 flhF flagellar biosyn 94.5 1.8 3.9E-05 51.3 18.5 85 187-274 223-308 (424)
222 TIGR02238 recomb_DMC1 meiotic 94.5 0.065 1.4E-06 60.3 6.3 87 187-274 98-200 (313)
223 KOG2123 Uncharacterized conser 94.4 0.0056 1.2E-07 63.6 -2.0 80 567-647 36-123 (388)
224 cd01394 radB RadB. The archaea 94.4 0.08 1.7E-06 57.0 6.6 40 187-228 21-60 (218)
225 PF02562 PhoH: PhoH-like prote 94.3 0.083 1.8E-06 54.8 6.2 114 187-305 21-156 (205)
226 PF13207 AAA_17: AAA domain; P 94.3 0.024 5.3E-07 54.3 2.2 20 188-207 2-21 (121)
227 TIGR02639 ClpA ATP-dependent C 94.3 0.21 4.6E-06 64.1 11.2 134 187-335 205-358 (731)
228 PF07728 AAA_5: AAA domain (dy 94.2 0.021 4.6E-07 56.4 1.6 86 188-287 2-87 (139)
229 KOG1644 U2-associated snRNP A' 94.2 0.037 8.1E-07 55.2 3.2 86 566-652 59-151 (233)
230 PF00154 RecA: recA bacterial 94.2 0.11 2.4E-06 57.9 7.2 84 186-276 54-142 (322)
231 COG1484 DnaC DNA replication p 94.2 0.11 2.3E-06 56.8 7.0 78 188-283 108-185 (254)
232 TIGR03345 VI_ClpV1 type VI sec 94.2 0.29 6.4E-06 63.4 12.1 131 187-335 210-363 (852)
233 PRK11889 flhF flagellar biosyn 94.2 0.23 5E-06 56.3 9.5 87 186-276 242-331 (436)
234 PRK04301 radA DNA repair and r 94.1 0.089 1.9E-06 60.1 6.6 54 187-241 104-161 (317)
235 TIGR00763 lon ATP-dependent pr 94.1 5.9 0.00013 51.5 23.6 22 187-208 349-370 (775)
236 PRK13695 putative NTPase; Prov 94.0 0.045 9.7E-07 56.4 3.4 21 188-208 3-23 (174)
237 PF00448 SRP54: SRP54-type pro 94.0 0.14 3E-06 53.5 7.0 86 187-274 3-92 (196)
238 TIGR00602 rad24 checkpoint pro 94.0 0.17 3.6E-06 62.3 8.7 22 187-208 112-133 (637)
239 PHA00729 NTP-binding motif con 93.9 0.064 1.4E-06 56.2 4.5 21 187-207 19-39 (226)
240 PRK10787 DNA-binding ATP-depen 93.9 3.9 8.5E-05 52.6 21.1 136 187-335 351-506 (784)
241 PRK08699 DNA polymerase III su 93.9 0.42 9.2E-06 54.3 11.4 71 264-334 112-184 (325)
242 cd01120 RecA-like_NTPases RecA 93.9 0.22 4.9E-06 50.7 8.5 39 188-228 2-40 (165)
243 COG1618 Predicted nucleotide k 93.8 0.05 1.1E-06 52.3 3.0 21 188-208 8-28 (179)
244 KOG2004 Mitochondrial ATP-depe 93.6 1.3 2.8E-05 53.4 14.4 77 187-276 440-516 (906)
245 PLN03187 meiotic recombination 93.6 0.23 5.1E-06 56.3 8.4 56 187-243 128-187 (344)
246 TIGR03499 FlhF flagellar biosy 93.6 0.2 4.3E-06 55.9 7.8 85 187-274 196-281 (282)
247 PLN03186 DNA repair protein RA 93.6 0.2 4.3E-06 57.0 7.9 55 187-242 125-183 (342)
248 COG0470 HolB ATPase involved i 93.5 0.21 4.5E-06 57.9 8.3 117 188-321 27-167 (325)
249 PRK12724 flagellar biosynthesi 93.5 0.16 3.4E-06 58.5 6.8 21 187-207 225-245 (432)
250 cd01131 PilT Pilus retraction 93.4 0.087 1.9E-06 55.4 4.5 109 187-308 3-112 (198)
251 KOG0728 26S proteasome regulat 93.3 1.1 2.3E-05 46.3 11.4 128 187-335 183-331 (404)
252 KOG0733 Nuclear AAA ATPase (VC 93.3 0.8 1.7E-05 53.9 12.0 69 187-276 225-293 (802)
253 PRK14722 flhF flagellar biosyn 93.3 0.21 4.5E-06 57.2 7.4 85 187-276 139-226 (374)
254 PRK08233 hypothetical protein; 93.3 0.17 3.6E-06 52.8 6.4 22 187-208 5-26 (182)
255 KOG0735 AAA+-type ATPase [Post 93.2 0.13 2.8E-06 61.2 5.7 68 189-275 435-504 (952)
256 TIGR02239 recomb_RAD51 DNA rep 93.2 0.15 3.2E-06 57.7 6.1 55 187-242 98-156 (316)
257 COG0572 Udk Uridine kinase [Nu 93.2 0.14 3.1E-06 53.0 5.3 74 186-266 9-85 (218)
258 PRK05986 cob(I)alamin adenolsy 93.1 0.2 4.3E-06 51.0 6.1 117 187-305 24-158 (191)
259 PF13504 LRR_7: Leucine rich r 93.1 0.055 1.2E-06 30.7 1.2 16 595-610 2-17 (17)
260 TIGR00708 cobA cob(I)alamin ad 93.0 0.27 5.9E-06 49.3 6.9 117 187-305 7-140 (173)
261 PF05659 RPW8: Arabidopsis bro 93.0 1.9 4.1E-05 42.2 12.4 84 4-87 2-86 (147)
262 TIGR02236 recomb_radA DNA repa 92.9 0.19 4.2E-06 57.3 6.7 54 187-241 97-154 (310)
263 PRK06762 hypothetical protein; 92.9 1 2.3E-05 45.9 11.5 21 187-207 4-24 (166)
264 KOG2739 Leucine-rich acidic nu 92.9 0.071 1.5E-06 55.9 2.7 61 591-652 40-102 (260)
265 KOG1969 DNA replication checkp 92.8 0.19 4.2E-06 60.1 6.4 71 189-278 330-400 (877)
266 CHL00195 ycf46 Ycf46; Provisio 92.8 0.34 7.4E-06 58.1 8.7 130 187-337 261-407 (489)
267 COG2842 Uncharacterized ATPase 92.8 0.88 1.9E-05 49.2 10.7 131 187-338 96-226 (297)
268 TIGR01243 CDC48 AAA family ATP 92.8 0.65 1.4E-05 60.0 12.0 149 188-362 490-657 (733)
269 COG4608 AppF ABC-type oligopep 92.7 0.3 6.4E-06 52.2 7.0 124 187-313 41-178 (268)
270 PRK06067 flagellar accessory p 92.7 0.31 6.8E-06 53.1 7.7 84 187-275 27-130 (234)
271 COG0466 Lon ATP-dependent Lon 92.7 3 6.5E-05 50.7 15.8 136 187-335 352-508 (782)
272 PRK06995 flhF flagellar biosyn 92.6 4.4 9.5E-05 48.4 17.3 87 186-275 257-344 (484)
273 COG0563 Adk Adenylate kinase a 92.6 0.15 3.3E-06 52.1 4.7 21 188-208 3-23 (178)
274 PF00485 PRK: Phosphoribulokin 92.6 0.33 7.1E-06 51.0 7.4 81 187-270 1-88 (194)
275 cd03214 ABC_Iron-Siderophores_ 92.5 0.79 1.7E-05 47.4 10.1 120 187-310 27-163 (180)
276 PTZ00301 uridine kinase; Provi 92.5 0.16 3.6E-06 53.4 5.0 21 187-207 5-25 (210)
277 cd03238 ABC_UvrA The excision 92.5 0.63 1.4E-05 47.5 9.0 113 187-309 23-153 (176)
278 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.5 0.62 1.4E-05 46.0 8.7 104 187-310 28-132 (144)
279 cd01125 repA Hexameric Replica 92.5 0.68 1.5E-05 50.6 9.9 20 188-207 4-23 (239)
280 PLN00020 ribulose bisphosphate 92.4 0.15 3.2E-06 57.0 4.5 23 186-208 149-171 (413)
281 PF08433 KTI12: Chromatin asso 92.3 0.21 4.7E-06 54.8 5.7 21 188-208 4-24 (270)
282 PF13238 AAA_18: AAA domain; P 92.3 0.079 1.7E-06 51.4 2.2 21 188-208 1-21 (129)
283 KOG0730 AAA+-type ATPase [Post 92.3 0.73 1.6E-05 55.0 10.2 27 187-215 470-496 (693)
284 PTZ00088 adenylate kinase 1; P 92.3 0.14 3.1E-06 54.8 4.2 20 188-207 9-28 (229)
285 TIGR03346 chaperone_ClpB ATP-d 92.3 0.33 7.2E-06 63.4 8.4 109 187-304 597-717 (852)
286 KOG1514 Origin recognition com 92.3 1.4 3.1E-05 53.0 12.5 107 188-302 425-546 (767)
287 KOG0991 Replication factor C, 92.3 0.71 1.5E-05 47.2 8.6 21 187-207 50-70 (333)
288 PF13671 AAA_33: AAA domain; P 92.2 0.2 4.4E-06 49.6 5.0 20 188-207 2-21 (143)
289 CHL00095 clpC Clp protease ATP 92.2 0.46 9.9E-06 62.0 9.4 132 187-333 202-352 (821)
290 TIGR03575 selen_PSTK_euk L-ser 92.1 0.39 8.5E-06 54.3 7.6 20 189-208 3-22 (340)
291 cd01122 GP4d_helicase GP4d_hel 92.1 0.99 2.1E-05 50.5 11.0 51 187-240 32-82 (271)
292 PRK10865 protein disaggregatio 92.1 0.35 7.7E-06 62.9 8.2 109 187-304 600-720 (857)
293 PRK11034 clpA ATP-dependent Cl 92.1 0.83 1.8E-05 58.0 11.2 134 187-335 209-362 (758)
294 cd02025 PanK Pantothenate kina 92.0 0.55 1.2E-05 50.2 8.3 73 188-263 2-76 (220)
295 cd03247 ABCC_cytochrome_bd The 92.0 0.65 1.4E-05 48.0 8.6 22 187-208 30-51 (178)
296 KOG0744 AAA+-type ATPase [Post 91.9 0.33 7.1E-06 52.3 6.2 77 187-274 179-259 (423)
297 PF00006 ATP-synt_ab: ATP synt 91.9 0.31 6.7E-06 51.4 6.1 82 187-274 17-114 (215)
298 COG2812 DnaX DNA polymerase II 91.9 0.48 1E-05 56.3 8.2 95 263-361 117-213 (515)
299 TIGR02639 ClpA ATP-dependent C 91.9 0.35 7.6E-06 62.2 7.8 92 188-291 487-579 (731)
300 cd03115 SRP The signal recogni 91.9 0.48 1E-05 48.7 7.5 20 188-207 3-22 (173)
301 TIGR00064 ftsY signal recognit 91.8 0.54 1.2E-05 52.0 8.2 87 186-275 73-164 (272)
302 TIGR03345 VI_ClpV1 type VI sec 91.8 0.23 4.9E-06 64.4 6.0 109 187-304 598-718 (852)
303 cd03222 ABC_RNaseL_inhibitor T 91.7 0.83 1.8E-05 46.8 8.8 102 187-311 27-138 (177)
304 PRK00771 signal recognition pa 91.7 0.75 1.6E-05 54.2 9.5 86 187-275 97-185 (437)
305 COG1136 SalX ABC-type antimicr 91.7 1.2 2.6E-05 46.9 10.0 60 253-312 148-210 (226)
306 COG2884 FtsE Predicted ATPase 91.7 0.8 1.7E-05 45.7 8.0 59 252-312 142-204 (223)
307 KOG0473 Leucine-rich repeat pr 91.6 0.015 3.2E-07 58.9 -3.8 85 584-670 31-116 (326)
308 PTZ00035 Rad51 protein; Provis 91.6 0.66 1.4E-05 53.1 8.8 87 187-274 120-222 (337)
309 cd03228 ABCC_MRP_Like The MRP 91.5 0.68 1.5E-05 47.5 8.1 117 187-310 30-160 (171)
310 PRK12726 flagellar biosynthesi 91.5 0.64 1.4E-05 52.7 8.2 88 186-276 207-296 (407)
311 COG1121 ZnuC ABC-type Mn/Zn tr 91.5 0.94 2E-05 48.5 9.1 122 187-310 32-204 (254)
312 COG0542 clpA ATP-binding subun 91.5 0.32 7E-06 60.3 6.4 102 189-304 525-643 (786)
313 PRK10867 signal recognition pa 91.4 0.51 1.1E-05 55.5 7.8 22 186-207 101-122 (433)
314 cd03216 ABC_Carb_Monos_I This 91.3 0.46 1E-05 48.2 6.5 116 187-310 28-147 (163)
315 TIGR03346 chaperone_ClpB ATP-d 91.2 1.2 2.6E-05 58.4 11.7 132 187-335 196-349 (852)
316 TIGR02858 spore_III_AA stage I 91.2 0.51 1.1E-05 51.8 7.0 110 187-309 113-233 (270)
317 COG1419 FlhF Flagellar GTP-bin 91.2 0.57 1.2E-05 53.2 7.4 86 185-274 203-290 (407)
318 PHA02244 ATPase-like protein 91.1 0.56 1.2E-05 53.0 7.4 21 188-208 122-142 (383)
319 cd03223 ABCD_peroxisomal_ALDP 91.1 1.3 2.7E-05 45.2 9.5 115 187-309 29-152 (166)
320 PF13604 AAA_30: AAA domain; P 91.0 0.2 4.4E-06 52.5 3.7 104 187-303 20-129 (196)
321 cd02028 UMPK_like Uridine mono 91.0 0.37 8.1E-06 49.6 5.6 20 188-207 2-21 (179)
322 PRK12723 flagellar biosynthesi 91.0 0.99 2.1E-05 52.3 9.5 86 187-276 176-265 (388)
323 KOG2035 Replication factor C, 91.0 1.9 4.1E-05 45.7 10.4 163 189-368 38-229 (351)
324 cd02019 NK Nucleoside/nucleoti 91.0 0.16 3.4E-06 42.6 2.3 21 188-208 2-22 (69)
325 TIGR00959 ffh signal recogniti 91.0 0.48 1E-05 55.6 7.1 87 187-275 101-192 (428)
326 cd02024 NRK1 Nicotinamide ribo 90.9 0.36 7.8E-06 49.7 5.3 21 188-208 2-22 (187)
327 PRK06217 hypothetical protein; 90.9 0.29 6.3E-06 50.8 4.7 21 188-208 4-24 (183)
328 PF07726 AAA_3: ATPase family 90.9 0.11 2.3E-06 48.7 1.2 26 189-216 3-28 (131)
329 cd01121 Sms Sms (bacterial rad 90.8 0.83 1.8E-05 52.9 8.7 80 187-274 84-167 (372)
330 cd03230 ABC_DR_subfamily_A Thi 90.8 0.88 1.9E-05 46.7 8.2 119 187-311 28-161 (173)
331 KOG3864 Uncharacterized conser 90.8 0.033 7.1E-07 55.7 -2.3 84 1306-1394 103-187 (221)
332 CHL00095 clpC Clp protease ATP 90.8 0.5 1.1E-05 61.6 7.7 106 189-304 543-661 (821)
333 PRK06002 fliI flagellum-specif 90.7 0.69 1.5E-05 54.1 7.9 85 187-274 167-263 (450)
334 cd02027 APSK Adenosine 5'-phos 90.6 1.4 3.1E-05 43.7 9.2 20 188-207 2-21 (149)
335 cd01135 V_A-ATPase_B V/A-type 90.6 0.68 1.5E-05 50.3 7.1 88 187-274 71-175 (276)
336 PRK14974 cell division protein 90.6 1.2 2.6E-05 50.6 9.4 89 186-277 141-234 (336)
337 PRK07132 DNA polymerase III su 90.6 5.3 0.00011 44.7 14.4 95 264-368 89-185 (299)
338 KOG1532 GTPase XAB1, interacts 90.6 0.97 2.1E-05 47.5 7.8 80 188-269 22-120 (366)
339 PTZ00185 ATPase alpha subunit; 90.4 1 2.2E-05 52.9 8.8 88 188-275 192-299 (574)
340 TIGR03877 thermo_KaiC_1 KaiC d 90.4 0.67 1.5E-05 50.4 7.2 45 187-235 23-67 (237)
341 PF03969 AFG1_ATPase: AFG1-lik 90.4 0.34 7.3E-06 55.7 5.0 78 185-281 62-143 (362)
342 KOG0924 mRNA splicing factor A 90.4 1.1 2.4E-05 53.1 8.8 131 187-322 373-530 (1042)
343 PRK09280 F0F1 ATP synthase sub 90.3 0.89 1.9E-05 53.4 8.4 86 188-274 147-247 (463)
344 PRK09519 recA DNA recombinatio 90.2 0.61 1.3E-05 58.5 7.3 82 187-275 62-148 (790)
345 PRK03839 putative kinase; Prov 90.2 0.16 3.5E-06 52.7 2.1 21 188-208 3-23 (180)
346 PRK00625 shikimate kinase; Pro 90.2 0.17 3.7E-06 51.5 2.2 20 188-207 3-22 (173)
347 COG1102 Cmk Cytidylate kinase 90.1 0.27 5.8E-06 47.5 3.2 43 188-243 3-45 (179)
348 PF13504 LRR_7: Leucine rich r 90.1 0.15 3.3E-06 29.0 1.0 17 571-587 1-17 (17)
349 PF00910 RNA_helicase: RNA hel 90.1 0.18 4E-06 46.7 2.2 20 189-208 2-21 (107)
350 PF07724 AAA_2: AAA domain (Cd 90.0 0.16 3.4E-06 51.7 1.8 37 188-226 6-43 (171)
351 cd03246 ABCC_Protease_Secretio 90.0 0.84 1.8E-05 46.9 7.2 21 187-207 30-50 (173)
352 TIGR01650 PD_CobS cobaltochela 90.0 3 6.5E-05 46.7 11.7 41 187-232 66-106 (327)
353 PRK12597 F0F1 ATP synthase sub 90.0 0.57 1.2E-05 55.2 6.5 86 188-274 146-246 (461)
354 COG4088 Predicted nucleotide k 90.0 0.61 1.3E-05 47.0 5.6 20 188-207 4-23 (261)
355 KOG2228 Origin recognition com 90.0 2.6 5.6E-05 46.2 10.6 145 187-335 51-219 (408)
356 KOG0733 Nuclear AAA ATPase (VC 90.0 0.62 1.3E-05 54.7 6.5 152 188-362 548-718 (802)
357 cd02021 GntK Gluconate kinase 89.9 1.9 4E-05 43.1 9.5 21 188-208 2-22 (150)
358 PF12061 DUF3542: Protein of u 89.8 0.85 1.8E-05 48.8 6.8 55 33-87 318-373 (402)
359 cd03229 ABC_Class3 This class 89.7 0.71 1.5E-05 47.7 6.4 21 187-207 28-48 (178)
360 COG0396 sufC Cysteine desulfur 89.7 2.3 4.9E-05 44.2 9.6 63 253-317 150-216 (251)
361 PF14532 Sigma54_activ_2: Sigm 89.7 0.36 7.7E-06 47.4 3.9 85 188-305 24-110 (138)
362 TIGR03574 selen_PSTK L-seryl-t 89.6 0.64 1.4E-05 51.2 6.3 21 188-208 2-22 (249)
363 PRK08972 fliI flagellum-specif 89.5 1 2.3E-05 52.4 8.0 83 188-274 165-261 (444)
364 COG1428 Deoxynucleoside kinase 89.5 0.19 4.2E-06 51.2 1.9 22 187-208 6-27 (216)
365 PRK14723 flhF flagellar biosyn 89.5 1.1 2.3E-05 56.2 8.5 86 186-275 186-273 (767)
366 PRK08149 ATP synthase SpaL; Va 89.4 0.8 1.7E-05 53.5 7.0 84 187-274 153-250 (428)
367 cd02034 CooC The accessory pro 89.4 1.2 2.6E-05 41.9 6.9 21 188-208 2-22 (116)
368 KOG3347 Predicted nucleotide k 89.3 0.41 8.9E-06 45.4 3.7 67 188-265 10-76 (176)
369 PRK06731 flhF flagellar biosyn 89.3 2 4.3E-05 47.2 9.6 89 186-277 76-166 (270)
370 PRK07004 replicative DNA helic 89.3 8.4 0.00018 46.4 15.8 52 187-241 215-266 (460)
371 PRK14721 flhF flagellar biosyn 89.2 1.4 3E-05 51.6 8.7 86 186-274 192-278 (420)
372 cd03283 ABC_MutS-like MutS-lik 89.2 1.6 3.5E-05 45.9 8.6 22 186-207 26-47 (199)
373 PF01583 APS_kinase: Adenylyls 89.1 0.37 7.9E-06 47.6 3.5 33 188-222 5-37 (156)
374 KOG0743 AAA+-type ATPase [Post 89.1 5.7 0.00012 45.8 13.1 72 297-375 339-416 (457)
375 PF07693 KAP_NTPase: KAP famil 89.1 3 6.5E-05 48.2 11.8 22 187-208 22-43 (325)
376 PRK05480 uridine/cytidine kina 89.1 0.22 4.9E-06 53.1 2.2 22 187-208 8-29 (209)
377 TIGR00235 udk uridine kinase. 89.1 0.23 4.9E-06 52.9 2.2 22 186-207 7-28 (207)
378 KOG0731 AAA+-type ATPase conta 89.1 4.2 9.2E-05 50.5 13.0 154 186-365 345-521 (774)
379 TIGR03600 phage_DnaB phage rep 89.1 8.5 0.00018 46.2 15.8 52 187-241 196-247 (421)
380 TIGR01313 therm_gnt_kin carboh 89.0 1.6 3.4E-05 44.4 8.3 19 189-207 2-20 (163)
381 cd01878 HflX HflX subfamily. 88.9 0.53 1.1E-05 50.1 4.9 57 138-208 8-64 (204)
382 PRK11034 clpA ATP-dependent Cl 88.9 0.28 6E-06 62.2 3.1 91 188-290 491-582 (758)
383 PRK10865 protein disaggregatio 88.8 2.6 5.7E-05 55.0 11.9 22 187-208 201-222 (857)
384 TIGR01243 CDC48 AAA family ATP 88.8 1.5 3.2E-05 56.7 9.7 151 187-363 214-382 (733)
385 TIGR00554 panK_bact pantothena 88.8 0.88 1.9E-05 50.4 6.5 76 187-265 64-141 (290)
386 cd00267 ABC_ATPase ABC (ATP-bi 88.8 0.88 1.9E-05 45.9 6.1 116 187-311 27-146 (157)
387 PRK04328 hypothetical protein; 88.7 0.82 1.8E-05 50.1 6.3 38 187-226 25-62 (249)
388 PF13481 AAA_25: AAA domain; P 88.7 1.3 2.8E-05 46.6 7.6 40 187-226 34-81 (193)
389 PRK00889 adenylylsulfate kinas 88.7 0.63 1.4E-05 48.0 5.1 22 187-208 6-27 (175)
390 PRK06547 hypothetical protein; 88.6 0.27 5.9E-06 50.0 2.2 22 187-208 17-38 (172)
391 COG2607 Predicted ATPase (AAA+ 88.5 1.2 2.6E-05 46.3 6.5 92 187-304 87-182 (287)
392 cd03281 ABC_MSH5_euk MutS5 hom 88.4 0.49 1.1E-05 50.3 4.1 121 186-311 30-160 (213)
393 TIGR01040 V-ATPase_V1_B V-type 88.4 0.77 1.7E-05 53.5 5.9 88 187-274 143-256 (466)
394 cd03282 ABC_MSH4_euk MutS4 hom 88.4 0.53 1.1E-05 49.6 4.3 121 186-313 30-159 (204)
395 TIGR03881 KaiC_arch_4 KaiC dom 88.2 1.3 2.8E-05 48.1 7.4 38 187-226 22-59 (229)
396 COG3640 CooC CO dehydrogenase 88.2 0.58 1.3E-05 48.4 4.2 49 187-244 2-51 (255)
397 PRK13947 shikimate kinase; Pro 88.2 0.28 6.1E-06 50.4 2.1 20 188-207 4-23 (171)
398 cd01134 V_A-ATPase_A V/A-type 88.2 2.2 4.7E-05 48.0 8.9 46 188-237 160-206 (369)
399 PRK06696 uridine kinase; Valid 88.2 0.28 6.1E-06 52.8 2.2 21 187-207 24-44 (223)
400 PRK00279 adk adenylate kinase; 88.1 1.4 3E-05 47.2 7.5 20 188-207 3-22 (215)
401 TIGR03305 alt_F1F0_F1_bet alte 88.1 0.69 1.5E-05 54.2 5.4 86 188-274 141-241 (449)
402 PRK10733 hflB ATP-dependent me 88.1 3 6.5E-05 52.7 11.4 127 188-335 188-335 (644)
403 PRK05439 pantothenate kinase; 88.0 1.2 2.6E-05 49.8 6.9 77 187-266 88-166 (311)
404 KOG0734 AAA+-type ATPase conta 88.0 2.7 5.9E-05 48.8 9.6 25 185-209 337-361 (752)
405 PRK05973 replicative DNA helic 87.9 1.9 4.1E-05 46.2 8.1 46 187-236 66-111 (237)
406 PRK08927 fliI flagellum-specif 87.9 1.7 3.7E-05 50.9 8.4 84 187-274 160-257 (442)
407 PRK04040 adenylate kinase; Pro 87.9 0.31 6.7E-06 50.6 2.2 21 187-207 4-24 (188)
408 PF00158 Sigma54_activat: Sigm 87.8 0.79 1.7E-05 46.5 5.0 21 188-208 25-45 (168)
409 cd02023 UMPK Uridine monophosp 87.7 0.33 7.1E-06 51.3 2.3 20 188-207 2-21 (198)
410 smart00370 LRR Leucine-rich re 87.7 0.35 7.7E-06 31.2 1.6 20 593-612 1-20 (26)
411 smart00369 LRR_TYP Leucine-ric 87.7 0.35 7.7E-06 31.2 1.6 20 593-612 1-20 (26)
412 cd00544 CobU Adenosylcobinamid 87.7 1.2 2.7E-05 45.1 6.3 78 189-274 3-82 (169)
413 COG1936 Predicted nucleotide k 87.7 0.34 7.4E-06 47.6 2.1 19 188-206 3-21 (180)
414 PRK07667 uridine kinase; Provi 87.7 0.52 1.1E-05 49.4 3.7 21 187-207 19-39 (193)
415 cd01132 F1_ATPase_alpha F1 ATP 87.5 2.2 4.7E-05 46.5 8.3 84 187-274 71-170 (274)
416 COG0703 AroK Shikimate kinase 87.5 0.2 4.4E-06 49.8 0.5 26 188-215 5-30 (172)
417 COG1066 Sms Predicted ATP-depe 87.5 2.5 5.3E-05 47.9 8.8 78 189-275 97-178 (456)
418 PRK13949 shikimate kinase; Pro 87.4 0.35 7.7E-06 49.2 2.2 22 187-208 3-24 (169)
419 PRK09099 type III secretion sy 87.3 1.4 3.1E-05 51.7 7.3 85 187-274 165-262 (441)
420 COG5238 RNA1 Ran GTPase-activa 87.3 0.15 3.2E-06 53.3 -0.6 150 590-767 26-198 (388)
421 TIGR01359 UMP_CMP_kin_fam UMP- 87.2 0.36 7.9E-06 50.2 2.3 20 188-207 2-21 (183)
422 PRK05922 type III secretion sy 87.1 0.87 1.9E-05 53.2 5.4 84 187-274 159-256 (434)
423 PRK12678 transcription termina 87.1 1 2.3E-05 53.4 6.0 85 189-274 420-512 (672)
424 PRK13543 cytochrome c biogenes 87.0 4.1 8.8E-05 43.6 10.3 22 187-208 39-60 (214)
425 PF12775 AAA_7: P-loop contain 87.0 0.19 4.1E-06 55.6 -0.0 81 188-281 36-116 (272)
426 TIGR03498 FliI_clade3 flagella 87.0 1.5 3.2E-05 51.4 7.2 85 187-274 142-239 (418)
427 PRK09270 nucleoside triphospha 86.9 1.5 3.3E-05 47.4 6.9 21 187-207 35-55 (229)
428 cd01136 ATPase_flagellum-secre 86.8 2.1 4.6E-05 48.2 8.1 84 187-274 71-168 (326)
429 PRK06904 replicative DNA helic 86.8 14 0.00029 44.8 15.4 52 187-241 223-274 (472)
430 PRK11823 DNA repair protein Ra 86.8 1.7 3.7E-05 51.9 7.9 80 187-274 82-165 (446)
431 cd02029 PRK_like Phosphoribulo 86.7 1.7 3.7E-05 46.9 6.8 76 188-265 2-84 (277)
432 COG0541 Ffh Signal recognition 86.6 38 0.00082 39.3 17.5 55 187-244 102-158 (451)
433 PRK06793 fliI flagellum-specif 86.5 1.7 3.6E-05 51.0 7.2 120 187-312 158-293 (432)
434 cd03217 ABC_FeS_Assembly ABC-t 86.5 2.1 4.5E-05 45.2 7.5 22 187-208 28-49 (200)
435 PF10443 RNA12: RNA12 protein; 86.5 11 0.00025 43.5 13.5 117 266-386 149-297 (431)
436 KOG0736 Peroxisome assembly fa 86.4 1.4 3.1E-05 53.4 6.7 68 188-276 708-775 (953)
437 PRK07594 type III secretion sy 86.4 1.3 2.9E-05 51.7 6.5 84 187-274 157-254 (433)
438 PRK08533 flagellar accessory p 86.4 2.4 5.1E-05 45.8 8.0 46 187-236 26-71 (230)
439 PRK00131 aroK shikimate kinase 86.4 0.42 9.1E-06 49.3 2.2 21 187-207 6-26 (175)
440 TIGR01069 mutS2 MutS2 family p 86.4 0.44 9.6E-06 60.8 2.8 102 264-375 401-508 (771)
441 TIGR01041 ATP_syn_B_arch ATP s 86.3 1.2 2.6E-05 52.7 6.0 87 188-274 144-247 (458)
442 TIGR02322 phosphon_PhnN phosph 86.3 0.43 9.4E-06 49.4 2.2 22 187-208 3-24 (179)
443 COG0464 SpoVK ATPases of the A 86.3 3.5 7.6E-05 50.7 10.5 129 187-336 278-424 (494)
444 TIGR01360 aden_kin_iso1 adenyl 86.3 0.45 9.7E-06 49.8 2.4 21 187-207 5-25 (188)
445 TIGR03878 thermo_KaiC_2 KaiC d 86.1 1.8 3.9E-05 47.7 7.1 38 187-226 38-75 (259)
446 PRK15453 phosphoribulokinase; 86.1 2.4 5.1E-05 46.2 7.6 74 187-263 7-88 (290)
447 cd00464 SK Shikimate kinase (S 86.0 0.47 1E-05 47.7 2.2 20 188-207 2-21 (154)
448 PRK06936 type III secretion sy 85.9 1.6 3.5E-05 51.0 6.8 84 187-274 164-261 (439)
449 PRK10875 recD exonuclease V su 85.9 1.9 4.2E-05 53.4 7.9 112 187-303 169-300 (615)
450 PF03029 ATP_bind_1: Conserved 85.9 0.41 8.8E-06 51.7 1.8 20 190-209 1-20 (238)
451 cd03243 ABC_MutS_homologs The 85.9 0.74 1.6E-05 48.8 3.8 22 186-207 30-51 (202)
452 cd00071 GMPK Guanosine monopho 85.8 0.53 1.1E-05 46.0 2.4 20 188-207 2-21 (137)
453 TIGR01039 atpD ATP synthase, F 85.8 1.8 3.8E-05 50.9 7.0 86 188-274 146-246 (461)
454 COG0467 RAD55 RecA-superfamily 85.8 0.75 1.6E-05 51.0 3.9 38 187-226 25-62 (260)
455 TIGR01425 SRP54_euk signal rec 85.7 1.9 4.2E-05 50.4 7.3 22 186-207 101-122 (429)
456 PF08477 Miro: Miro-like prote 85.7 0.53 1.2E-05 44.8 2.4 22 188-209 2-23 (119)
457 COG4181 Predicted ABC-type tra 85.7 8.9 0.00019 37.8 10.3 86 227-313 121-215 (228)
458 TIGR03324 alt_F1F0_F1_al alter 85.6 2.4 5.2E-05 50.3 8.0 83 188-274 165-263 (497)
459 TIGR00416 sms DNA repair prote 85.5 2.6 5.6E-05 50.5 8.4 38 187-226 96-133 (454)
460 cd02020 CMPK Cytidine monophos 85.5 0.53 1.1E-05 46.9 2.3 20 188-207 2-21 (147)
461 TIGR02902 spore_lonB ATP-depen 85.3 1.8 3.8E-05 53.3 7.1 20 188-207 89-108 (531)
462 KOG0729 26S proteasome regulat 85.3 0.53 1.2E-05 48.9 2.2 26 188-215 214-239 (435)
463 TIGR01447 recD exodeoxyribonuc 85.3 1.8 3.9E-05 53.5 7.2 32 268-302 262-293 (586)
464 PRK13948 shikimate kinase; Pro 85.3 0.51 1.1E-05 48.5 2.1 21 187-207 12-32 (182)
465 PRK05636 replicative DNA helic 85.2 19 0.00041 43.9 15.6 51 187-240 267-317 (505)
466 COG1124 DppF ABC-type dipeptid 85.2 0.78 1.7E-05 48.0 3.3 21 187-207 35-55 (252)
467 cd00227 CPT Chloramphenicol (C 85.2 0.53 1.2E-05 48.5 2.2 21 187-207 4-24 (175)
468 PRK13946 shikimate kinase; Pro 85.1 0.53 1.2E-05 48.9 2.2 21 187-207 12-32 (184)
469 cd00984 DnaB_C DnaB helicase C 85.1 3.6 7.9E-05 45.0 9.0 50 187-239 15-64 (242)
470 COG0003 ArsA Predicted ATPase 85.1 1 2.2E-05 50.6 4.5 47 187-235 4-50 (322)
471 KOG1051 Chaperone HSP104 and r 85.0 1.9 4.2E-05 54.6 7.2 89 190-290 596-685 (898)
472 KOG0736 Peroxisome assembly fa 85.0 3.9 8.4E-05 49.9 9.2 65 294-363 532-599 (953)
473 PRK10078 ribose 1,5-bisphospho 84.8 0.59 1.3E-05 48.7 2.4 22 187-208 4-25 (186)
474 PRK05057 aroK shikimate kinase 84.7 0.57 1.2E-05 47.9 2.2 22 187-208 6-27 (172)
475 KOG4252 GTP-binding protein [S 84.7 1.7 3.7E-05 42.3 5.0 36 187-223 22-57 (246)
476 PRK14530 adenylate kinase; Pro 84.6 0.57 1.2E-05 50.2 2.2 20 188-207 6-25 (215)
477 PRK05800 cobU adenosylcobinami 84.5 1.9 4.2E-05 43.8 5.9 80 188-274 4-85 (170)
478 PLN02796 D-glycerate 3-kinase 84.5 3.1 6.8E-05 46.9 7.9 21 187-207 102-122 (347)
479 TIGR03263 guanyl_kin guanylate 84.4 0.63 1.4E-05 48.3 2.4 21 187-207 3-23 (180)
480 PRK08472 fliI flagellum-specif 84.4 2.6 5.7E-05 49.4 7.6 22 187-208 159-180 (434)
481 cd00820 PEPCK_HprK Phosphoenol 84.3 0.64 1.4E-05 42.4 2.0 20 187-206 17-36 (107)
482 PF06745 KaiC: KaiC; InterPro 84.3 1 2.2E-05 48.7 4.1 84 187-274 21-124 (226)
483 smart00534 MUTSac ATPase domai 84.3 1.2 2.5E-05 46.4 4.3 118 188-311 2-128 (185)
484 TIGR01420 pilT_fam pilus retra 84.2 0.95 2.1E-05 52.3 4.0 107 187-305 124-230 (343)
485 PRK07721 fliI flagellum-specif 84.2 2.1 4.6E-05 50.6 6.8 85 187-274 160-257 (438)
486 COG4639 Predicted kinase [Gene 84.1 0.5 1.1E-05 45.5 1.2 21 187-207 4-24 (168)
487 TIGR03496 FliI_clade1 flagella 84.1 2.7 5.9E-05 49.2 7.6 84 187-274 139-236 (411)
488 COG1875 NYN ribonuclease and A 84.0 2.3 4.9E-05 47.2 6.3 35 266-303 352-386 (436)
489 COG2019 AdkA Archaeal adenylat 84.0 0.65 1.4E-05 45.2 2.0 47 186-244 5-51 (189)
490 PF00625 Guanylate_kin: Guanyl 84.0 0.76 1.6E-05 47.8 2.8 36 186-223 3-38 (183)
491 KOG3864 Uncharacterized conser 83.9 0.25 5.4E-06 49.7 -0.8 67 974-1043 120-186 (221)
492 PRK10751 molybdopterin-guanine 83.9 0.72 1.6E-05 46.6 2.4 22 187-208 8-29 (173)
493 PF13479 AAA_24: AAA domain 83.9 2.7 5.8E-05 44.9 6.9 18 188-205 6-23 (213)
494 PRK07196 fliI flagellum-specif 83.8 1.8 3.8E-05 50.8 5.8 84 187-274 157-254 (434)
495 PF03796 DnaB_C: DnaB-like hel 83.6 2.6 5.7E-05 46.6 7.0 53 187-242 21-73 (259)
496 cd01672 TMPK Thymidine monopho 83.5 1.7 3.7E-05 45.9 5.3 21 188-208 3-23 (200)
497 TIGR00390 hslU ATP-dependent p 83.5 1.4 3.1E-05 50.7 4.8 52 187-240 49-104 (441)
498 PRK05688 fliI flagellum-specif 83.5 2.1 4.5E-05 50.3 6.3 84 187-274 170-267 (451)
499 PRK05022 anaerobic nitric oxid 83.5 3.4 7.4E-05 50.8 8.5 22 187-208 212-233 (509)
500 COG1126 GlnQ ABC-type polar am 83.4 1 2.3E-05 46.1 3.3 34 186-222 29-62 (240)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-81 Score=772.20 Aligned_cols=669 Identities=31% Similarity=0.452 Sum_probs=503.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhccCChHHHHHHHHHHHHHHhhHhhHHHHHHHHHhhhhccCCCCCCCc
Q 042296 26 RFFARQEQILADLMKWKKMLMKINVVLDDADERQRTDKSVKLWLGELQNLAYDVEDLLDEFETEALGRKLLLGDGESDAA 105 (1446)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~eD~ld~~~~~~~~~~~~~~~~~~~~~ 105 (1446)
.++....+.++.+..|+++|..++.++++|+.++.....+..|...++|++|++||+++.|......++..+.
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~------- 90 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDL------- 90 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------
Confidence 3455556788899999999999999999999999888899999999999999999999999988766543211
Q ss_pred CCCCCCCCcccccccccccccccccCcccchhhHHHHHHHHHHHHHHHHHHhcccccCcccccccccccccccc--cc--
Q 042296 106 NDDQPSSSTGTSIFRKLIPTCCTTFTPRSIKFDYTIMSKIKEINARFQDIVSQKDLLDFKENSVGRSRKVRQRR--ET-- 181 (1446)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 181 (1446)
. .......+. .|...+........+.+++++-++...++....+...-..... ..........+ .+
T Consensus 91 ---l----~~~~~~~~~--~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 91 ---L----STRSVERQR--LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES-LDPREKVETRPIQSESD 160 (889)
T ss_pred ---h----hhhHHHHHH--HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc-ccchhhcccCCCCcccc
Confidence 0 000011111 1221221222223344555555555555554433211110000 00000000000 00
Q ss_pred ---------------ccccccceeEccCCchHHHHHHHHHcccc-hhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 042296 182 ---------------TSLVNEAKVYGMGGLGKTTLAQLVYNDAR-LQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN 245 (1446)
Q Consensus 182 ---------------~~~~~~~~i~G~gG~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 245 (1446)
......++|+||||+||||||+.++|+.. ++.+||.++||.||+.++...++++|+..++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 01114678999999999999999999987 99999999999999999999999999999987543
Q ss_pred C-CCCCHHHHHHHHHHHcCCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHh-hCCCCceecCCCC
Q 042296 246 V-DSLDFDKLQVELKKQLSQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAI-MGTVPAYPLKELS 323 (1446)
Q Consensus 246 ~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~L~ 323 (1446)
. ...+.++++..+.+.|++|||+|||||||++ .+|+.+..++|....||||++|||++.|+.. +++...+++++|+
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence 2 2334578999999999999999999999998 7899999999999899999999999999998 7888899999999
Q ss_pred hHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccC----CCCccccc
Q 042296 324 DEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWD----LPEERCDI 399 (1446)
Q Consensus 324 ~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~----~~~~~~~~ 399 (1446)
.+|||.||++.||.... ...+.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+...+. .+++.+.+
T Consensus 319 ~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i 397 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESI 397 (889)
T ss_pred ccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhh
Confidence 99999999999987642 33445899999999999999999999999999999999999999866544 33345789
Q ss_pred chhhhhhhccCCHHHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCcccccc--CC
Q 042296 400 LPALKVSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSS--ND 477 (1446)
Q Consensus 400 ~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~--~~ 477 (1446)
++++++||+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.+.+++..++++|+.|+.+|++++|++... +.
T Consensus 398 ~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 398 LPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999999987778899999999999999999999865 35
Q ss_pred CCceEehhhHHHHHHHhhc-----cceEEeecCCCC--cccccccccceEEEeecCCCccccccccccCCCCcceecccc
Q 042296 478 TLRFVMHDLVNDLAQWAAG-----NIYLRMEDAPGG--NKQQRFSKSLRHLSYIPGGHDGVKRFADFDDTEHLRTFLPVM 550 (1446)
Q Consensus 478 ~~~~~mH~lv~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~ 550 (1446)
..+|+|||+|||+|.++|+ .+..++....+. ......+..+|+++++.+.... ...-..+++|++|+...
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQR 554 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEee
Confidence 5689999999999999999 454444432111 1122334678999988765432 33445677899998887
Q ss_pred cccCCCCcchhHHHHhhh-cCceeEEEEeCCCC-ccccCccccCCCCCceeeccCccccccCcccccccccceeeccCcc
Q 042296 551 LSNCWGGYLAYSILQRLL-KLHRLKVFSLCGYQ-ISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCD 628 (1446)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~-i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 628 (1446)
+.. ....++..+| .++.||||||++|. +.++|++|++|.+||||+|+++.|+.+|.++++|+.|.+||+..+.
T Consensus 555 n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 555 NSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred cch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence 542 1345566667 89999999999876 8899999999999999999999999999999999999999999987
Q ss_pred ccccccccccCcccceeecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhccc---CeeEEeeccCCC
Q 042296 629 RLKKLCADMGNLIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLR---GTLKISKLENVK 705 (1446)
Q Consensus 629 ~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~---~~L~i~~l~~~~ 705 (1446)
....+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.....+...+..+..+..|. ..+.+..
T Consensus 630 ~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~----- 703 (889)
T KOG4658|consen 630 RLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG----- 703 (889)
T ss_pred ccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc-----
Confidence 777777777789999999987654 2222234566666676665555443332223333333332 1111110
Q ss_pred CcchhhhhhccCCCCCceEEEEe
Q 042296 706 HVGDAKEAQLDKKKNLKVLLLQW 728 (1446)
Q Consensus 706 ~~~~~~~~~l~~~~~L~~L~l~~ 728 (1446)
.........+..+.+|+.|.+..
T Consensus 704 ~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 704 CSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred cccceeecccccccCcceEEEEc
Confidence 11122333455566677776654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8e-59 Score=613.28 Aligned_cols=668 Identities=21% Similarity=0.270 Sum_probs=481.1
Q ss_pred cccccceeEccCCchHHHHHHHHHcccchhccCCceEEEEe---CCC-----------CC-HHHHHHHHHHHhcCCCCCC
Q 042296 183 SLVNEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCV---SED-----------FD-ITRITKSILNSIGTDQNVD 247 (1446)
Q Consensus 183 ~~~~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~-~~~~~~~i~~~l~~~~~~~ 247 (1446)
..+++++|+||||+||||||+++|+ ++..+|++.+|+.. +.. ++ ...++++++.++.......
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~ 282 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK 282 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc
Confidence 3467889999999999999999999 67889998888742 111 11 2345566666654332212
Q ss_pred CCCHHHHHHHHHHHcCCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhCCCCceecCCCChHhH
Q 042296 248 SLDFDKLQVELKKQLSQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMGTVPAYPLKELSDEDC 327 (1446)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~ 327 (1446)
.... ..+++.++++|+||||||||+. .+|+.+.....+.++||+||||||++.++..++..++|+++.+++++|
T Consensus 283 ~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea 356 (1153)
T PLN03210 283 IYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELA 356 (1153)
T ss_pred cCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHH
Confidence 1122 4577889999999999999887 788888877777789999999999999998887788999999999999
Q ss_pred HHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccCCCCcccccchhhhhhh
Q 042296 328 LNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWDLPEERCDILPALKVSY 407 (1446)
Q Consensus 328 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy 407 (1446)
|+||+++||+.. ..++++.+++++|+++|+|+|||++++|++|+++ +..+|++++++..... ...|.++|++||
T Consensus 357 ~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SY 430 (1153)
T PLN03210 357 LEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSY 430 (1153)
T ss_pred HHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhh
Confidence 999999999764 3456789999999999999999999999999987 6899999998754432 247999999999
Q ss_pred ccCCH-HHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCccccccCCCCceEehhh
Q 042296 408 YYLSP-RLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSSNDTLRFVMHDL 486 (1446)
Q Consensus 408 ~~L~~-~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~mH~l 486 (1446)
+.|++ ..|.||+++|+||.+..+ ..+..|++.+.+.. +..++.|+++|||+...+ ++.|||+
T Consensus 431 d~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~~---~~~MHdL 493 (1153)
T PLN03210 431 DGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRED---IVEMHSL 493 (1153)
T ss_pred hccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcCC---eEEhhhH
Confidence 99986 599999999999988654 34777888765531 223899999999987542 6999999
Q ss_pred HHHHHHHhhccce-------EEeecC--CCCcccccccccceEEEeecCCCcccc-ccccccCCCCcceecccccccCCC
Q 042296 487 VNDLAQWAAGNIY-------LRMEDA--PGGNKQQRFSKSLRHLSYIPGGHDGVK-RFADFDDTEHLRTFLPVMLSNCWG 556 (1446)
Q Consensus 487 v~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~-~~~~~~~~~~Lr~L~~~~~~~~~~ 556 (1446)
+|++|+.++.++. +.+... ............++++++......... ....|.+|.+|+.|.+........
T Consensus 494 l~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~ 573 (1153)
T PLN03210 494 LQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK 573 (1153)
T ss_pred HHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc
Confidence 9999999987653 111100 000001112245666666533322111 223577899999886644321111
Q ss_pred CcchhHHHHhhhcC-ceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccc
Q 042296 557 GYLAYSILQRLLKL-HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCA 635 (1446)
Q Consensus 557 ~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 635 (1446)
+.....+|..+..+ .+||+|++.++.+..+|..| ...+|++|++++|++..+|..+..+++|++|+|++|..++.+|.
T Consensus 574 ~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ 652 (1153)
T PLN03210 574 KEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD 652 (1153)
T ss_pred ccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc
Confidence 12233456666644 57999999999999999888 57999999999999999999999999999999999888888885
Q ss_pred cccCcccceeecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhc
Q 042296 636 DMGNLIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQL 715 (1446)
Q Consensus 636 ~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 715 (1446)
++.+++|++|++++|..+..+|..+++|++|+.|...... .+..+ +..+
T Consensus 653 -ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~-----------~L~~L-------------------p~~i 701 (1153)
T PLN03210 653 -LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE-----------NLEIL-------------------PTGI 701 (1153)
T ss_pred -cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC-----------CcCcc-------------------CCcC
Confidence 8899999999999998899999999999999988332111 01100 1111
Q ss_pred cCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCC--
Q 042296 716 DKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCT-- 793 (1446)
Q Consensus 716 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-- 793 (1446)
++++|+.|++++|.... ..+ ....+|+.|+++++.+..+|..+. +++|+.|.+.++....
T Consensus 702 -~l~sL~~L~Lsgc~~L~-----------~~p---~~~~nL~~L~L~~n~i~~lP~~~~---l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLK-----------SFP---DISTNISWLDLDETAIEEFPSNLR---LENLDELILCEMKSEKLW 763 (1153)
T ss_pred -CCCCCCEEeCCCCCCcc-----------ccc---cccCCcCeeecCCCcccccccccc---ccccccccccccchhhcc
Confidence 45678888877642110 011 124578889999888888887663 7888888887754211
Q ss_pred ----CCC--CCCCcCccceeecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEE
Q 042296 794 ----SLP--SIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELH 867 (1446)
Q Consensus 794 ----~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 867 (1446)
.++ .....++|+.|++++|..+..++..+. .+++|+.|.+.+|+.++... ... .+++|+.|+
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~------~L~~L~~L~Ls~C~~L~~LP-~~~-----~L~sL~~L~ 831 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ------NLHKLEHLEIENCINLETLP-TGI-----NLESLESLD 831 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhh------CCCCCCEEECCCCCCcCeeC-CCC-----CccccCEEE
Confidence 111 122346788888888877776665542 27888888888877666542 221 177888888
Q ss_pred ecCCCCCcCCCCCCCCCccEEEEeccC--ChhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccc
Q 042296 868 LLRCSKLQGTFPERLPSLEILVIQSCE--ELLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGP 945 (1446)
Q Consensus 868 l~~c~~l~~~~p~~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~ 945 (1446)
+++|..+. .+|...++|+.|+++++. .+|.++..+++|+.|++++|+.+..... .
T Consensus 832 Ls~c~~L~-~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~-~--------------------- 888 (1153)
T PLN03210 832 LSGCSRLR-TFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL-N--------------------- 888 (1153)
T ss_pred CCCCCccc-cccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc-c---------------------
Confidence 88887776 677777788888888775 4566777788888888888776543111 0
Q ss_pred hhccCCCcceeeecccccchhh
Q 042296 946 LKLQLPKLEELEIANIDELTYI 967 (1446)
Q Consensus 946 ~~~~l~~L~~L~i~~~~~l~~~ 967 (1446)
...+++|+.+.+.+|.+++.+
T Consensus 889 -~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 889 -ISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred -cccccCCCeeecCCCcccccc
Confidence 113566777777777666543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-39 Score=370.39 Aligned_cols=260 Identities=36% Similarity=0.644 Sum_probs=211.2
Q ss_pred cccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--CCCCHHHHHHHHHHHc
Q 042296 185 VNEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV--DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 185 ~~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~l 262 (1446)
.+.++|+||||+||||||+++|++.+++.+|+.++||.+++..+...++.+|+.+++..... ...+.++....+++.+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 44679999999999999999999777899999999999999999999999999999887432 4567888999999999
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhCC-CCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMGT-VPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++++|+.+||++||.+.++... .
T Consensus 99 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~ 175 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-S 175 (287)
T ss_dssp CCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS--
T ss_pred ccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 999999999999987 6898888888877789999999999998877654 57899999999999999999987654 2
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccCCC---CcccccchhhhhhhccCCHHHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWDLP---EERCDILPALKVSYYYLSPRLKQCF 418 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~~~---~~~~~~~~~l~~sy~~L~~~~k~cf 418 (1446)
..++..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++...+... +....+..++.+||+.||++.|+||
T Consensus 176 ~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f 255 (287)
T PF00931_consen 176 ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCF 255 (287)
T ss_dssp ---TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHH
Confidence 2344556789999999999999999999999776577889998875443332 2346789999999999999999999
Q ss_pred hhhccCCCCceeChHHHHHHHHhCCCCCC
Q 042296 419 TYCSLLPKDYEFKEEEIILLWIAVGFLDQ 447 (1446)
Q Consensus 419 ~~~~~fp~~~~i~~~~li~~w~a~g~i~~ 447 (1446)
+|||+||+++.|+++.++++|+++|||..
T Consensus 256 ~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 256 LYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred hhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999975
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3e-34 Score=383.39 Aligned_cols=496 Identities=19% Similarity=0.205 Sum_probs=263.0
Q ss_pred hHHHHhhhcCceeEEEEeCCCCcc-ccCcccc-CCCCCceeeccCcccc-ccCcccccccccceeeccCccccccccccc
Q 042296 561 YSILQRLLKLHRLKVFSLCGYQIS-ELPNSVG-DLRYLRYLNLSRTCIE-ILPDSINKLYNLHTLLLEDCDRLKKLCADM 637 (1446)
Q Consensus 561 ~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 637 (1446)
+.++..+..+++|++|+|++|.++ .+|..+. .+.+||+|+|++|.+. .+|. +.+++|++|+|++|...+.+|..+
T Consensus 83 ~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~ 160 (968)
T PLN00113 83 GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI 160 (968)
T ss_pred ccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH
Confidence 344555667888888888888776 5676554 7788888888888776 4553 467788888888876556777778
Q ss_pred cCcccceeecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccC
Q 042296 638 GNLIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDK 717 (1446)
Q Consensus 638 ~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 717 (1446)
+++++|++|++++|.....+|..++++++|++|+...+ ......+..+.+
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n------------------------------~l~~~~p~~l~~ 210 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN------------------------------QLVGQIPRELGQ 210 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC------------------------------CCcCcCChHHcC
Confidence 88888888888887755567777777777777622110 011112223344
Q ss_pred CCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-
Q 042296 718 KKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP- 796 (1446)
Q Consensus 718 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~- 796 (1446)
+++|+.|++++|... ..+|.++.. +++|+.|++++|...+.+|
T Consensus 211 l~~L~~L~L~~n~l~----------------------------------~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 211 MKSLKWIYLGYNNLS----------------------------------GEIPYEIGG--LTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred cCCccEEECcCCccC----------------------------------CcCChhHhc--CCCCCEEECcCceeccccCh
Confidence 444555544443221 133444433 5555555555555444444
Q ss_pred CCCCcCccceeecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcC
Q 042296 797 SIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQG 876 (1446)
Q Consensus 797 ~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 876 (1446)
.++.+++|+.|++++|.....++..+ .. +++|+.|++++| .+.+
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l-------------------------------~~----l~~L~~L~Ls~n-~l~~ 298 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSI-------------------------------FS----LQKLISLDLSDN-SLSG 298 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhH-------------------------------hh----ccCcCEEECcCC-eecc
Confidence 45555555555555443222111111 00 334444444444 2332
Q ss_pred CCCC---CCCCccEEEEeccC---ChhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccC
Q 042296 877 TFPE---RLPSLEILVIQSCE---ELLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQL 950 (1446)
Q Consensus 877 ~~p~---~l~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l 950 (1446)
.+|. .+++|+.|++++|. ..+..+..+++|+.|++++|.... ..+. ....+
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~----------------------~l~~~ 355 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG-EIPK----------------------NLGKH 355 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC-cCCh----------------------HHhCC
Confidence 3332 22233333333322 112234445555555555443110 0000 00112
Q ss_pred CCcceeeecccccchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccc
Q 042296 951 PKLEELEIANIDELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLS 1030 (1446)
Q Consensus 951 ~~L~~L~i~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~ 1030 (1446)
++|+.|+++++. -...+ +..+..+++|+.|++++|.....+|. .+.
T Consensus 356 ~~L~~L~Ls~n~----------------------------l~~~~-----p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~ 401 (968)
T PLN00113 356 NNLTVLDLSTNN----------------------------LTGEI-----PEGLCSSGNLFKLILFSNSLEGEIPK-SLG 401 (968)
T ss_pred CCCcEEECCCCe----------------------------eEeeC-----ChhHhCcCCCCEEECcCCEecccCCH-HHh
Confidence 333333333221 00000 11223345666777777655555554 566
Q ss_pred cCCcccEEEeccCCCCcccCC-CCCCCCccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCCccccCCCCCCCccE
Q 042296 1031 LINSLKEIGIYNCSSLVCFPE-AALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYITSVQLPASLKH 1109 (1446)
Q Consensus 1031 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~sL~~ 1109 (1446)
.+++|+.|++++|.....+|. ...+++|+.|++++|...+.+|..+.. .++|+.|++++|...+.+|...
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~~~~~~p~~~------- 472 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD--MPSLQMLSLARNKFFGGLPDSF------- 472 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc--CCCCcEEECcCceeeeecCccc-------
Confidence 666777777766544333332 123556666666666655555543322 2336666666554433222100
Q ss_pred EEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCCcCCceeecccCcccccccCCCCcccccee
Q 042296 1110 VEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHLEVGICSKLKFLSCSGNLPQALKFI 1189 (1446)
Q Consensus 1110 L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L 1189 (1446)
..++|+.|++++|. ....+|.....+++|+.|
T Consensus 473 ------------------------~~~~L~~L~ls~n~------------------------l~~~~~~~~~~l~~L~~L 504 (968)
T PLN00113 473 ------------------------GSKRLENLDLSRNQ------------------------FSGAVPRKLGSLSELMQL 504 (968)
T ss_pred ------------------------ccccceEEECcCCc------------------------cCCccChhhhhhhccCEE
Confidence 11234455554443 222223233334566666
Q ss_pred eeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCCCCCCcccccceecccccCc
Q 042296 1190 CVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPEGGLPSANLTKLQITWCDKL 1269 (1446)
Q Consensus 1190 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l 1269 (1446)
++++|...+.+|..+.++++|+.|++++|...+.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|+..
T Consensus 505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 67776666666666777777777777777666667777777777777777777666667766666667777777776666
Q ss_pred ccccc
Q 042296 1270 EALPE 1274 (1446)
Q Consensus 1270 ~~lp~ 1274 (1446)
..+|.
T Consensus 585 ~~~p~ 589 (968)
T PLN00113 585 GSLPS 589 (968)
T ss_pred eeCCC
Confidence 66664
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-33 Score=378.04 Aligned_cols=530 Identities=15% Similarity=0.150 Sum_probs=353.6
Q ss_pred cceEEEeecCCCccccccccccCCCCcceecccccccCCCCcchhHHHHhhh-cCceeEEEEeCCCCcc-ccCccccCCC
Q 042296 517 SLRHLSYIPGGHDGVKRFADFDDTEHLRTFLPVMLSNCWGGYLAYSILQRLL-KLHRLKVFSLCGYQIS-ELPNSVGDLR 594 (1446)
Q Consensus 517 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~-~lp~~i~~L~ 594 (1446)
.++.+.+..+..... ....+..+++|+.|.+.++ .+.+.+|..++ .+++||+|+|++|.++ .+|. +.+.
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n------~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNN------QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCC------ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 566676655432221 1345678899999966543 34567888888 9999999999999987 4564 5689
Q ss_pred CCceeeccCcccc-ccCcccccccccceeeccCccccccccccccCcccceeecccCCCcccccCCcccccccccccCce
Q 042296 595 YLRYLNLSRTCIE-ILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNF 673 (1446)
Q Consensus 595 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 673 (1446)
+|++|+|++|.+. .+|..++++++|++|++++|...+.+|..|+++++|++|++++|.....+|..++++++|++|...
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 9999999999987 789999999999999999997777899999999999999999998667889999999999988321
Q ss_pred EecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCC
Q 042296 674 AVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPH 753 (1446)
Q Consensus 674 ~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~ 753 (1446)
.+ ......+..+.++++|+.|++++|...+ ..+..+..+
T Consensus 221 ~n------------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------~~p~~l~~l 259 (968)
T PLN00113 221 YN------------------------------NLSGEIPYEIGGLTSLNHLDLVYNNLTG-----------PIPSSLGNL 259 (968)
T ss_pred CC------------------------------ccCCcCChhHhcCCCCCEEECcCceecc-----------ccChhHhCC
Confidence 11 1122234456778888999888764431 133445666
Q ss_pred CCcceEEEeccCCC-CCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeecccccceeEeCccccCCCCCCCC
Q 042296 754 QNLEQFFISGYGGT-KFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPF 831 (1446)
Q Consensus 754 ~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 831 (1446)
++|+.|++++|... .+|.++.. +++|+.|++++|...+.+| .+.++++|+.|++++|.....++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------------ 325 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFS--LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------------ 325 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhh--ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC------------
Confidence 77777777776643 45655544 6677777777776665555 46666777777776554222211
Q ss_pred CCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCCCCCCccEEEEeccCChhhcCCCCCcccEEEE
Q 042296 832 PCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPERLPSLEILVIQSCEELLVSIRRLPALCKFEI 911 (1446)
Q Consensus 832 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l 911 (1446)
..+.. +++|+.|++++| .+.+.+|. .+..+++|+.|++
T Consensus 326 -------------------~~~~~----l~~L~~L~L~~n-~l~~~~p~------------------~l~~~~~L~~L~L 363 (968)
T PLN00113 326 -------------------VALTS----LPRLQVLQLWSN-KFSGEIPK------------------NLGKHNNLTVLDL 363 (968)
T ss_pred -------------------hhHhc----CCCCCEEECcCC-CCcCcCCh------------------HHhCCCCCcEEEC
Confidence 11111 566777777766 44444442 3344555555655
Q ss_pred ecccCeeeeCCCCCCceeeecccccccccccccchhccCCCcceeeecccccchhhhhcccccccccccccccccccCCC
Q 042296 912 SGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEELEIANIDELTYIWQNETRLLQDISSLKRLKIKSCPN 991 (1446)
Q Consensus 912 ~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 991 (1446)
++|.... ..+.. ...+++|+.|.+.++.-.
T Consensus 364 s~n~l~~-~~p~~----------------------~~~~~~L~~L~l~~n~l~--------------------------- 393 (968)
T PLN00113 364 STNNLTG-EIPEG----------------------LCSSGNLFKLILFSNSLE--------------------------- 393 (968)
T ss_pred CCCeeEe-eCChh----------------------HhCcCCCCEEECcCCEec---------------------------
Confidence 5543211 01100 112334444444432110
Q ss_pred cccchhhhhhhccCccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCC-CCCCCccEEEEeecCCcc
Q 042296 992 LQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEA-ALPSQLRIISIQYCNALK 1070 (1446)
Q Consensus 992 L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~l~ 1070 (1446)
.. .+..+..+++|+.|++++|...+.+|. .+..+++|+.|++++|.....++.. ..+++|+.|++++|...+
T Consensus 394 -~~-----~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 394 -GE-----IPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred -cc-----CCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 00 012345678999999999987777776 7899999999999997655544432 347899999999999888
Q ss_pred cCCccccCCCCCCccEEEEEecCCCccccCCCCCCCccEEEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchh
Q 042296 1071 SLPVTWMHDTNTSLETLKVYGCNLLTYITSVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLI 1150 (1446)
Q Consensus 1071 ~~p~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 1150 (1446)
.+|..+. .++|+.|++++|.....++. .+..+++|+.|++++|.
T Consensus 467 ~~p~~~~---~~~L~~L~ls~n~l~~~~~~------------------------------~~~~l~~L~~L~Ls~N~--- 510 (968)
T PLN00113 467 GLPDSFG---SKRLENLDLSRNQFSGAVPR------------------------------KLGSLSELMQLKLSENK--- 510 (968)
T ss_pred ecCcccc---cccceEEECcCCccCCccCh------------------------------hhhhhhccCEEECcCCc---
Confidence 8886543 25699999999876543331 01122334444444432
Q ss_pred hcccCCCCCCcCCceeecccCcccccccCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCC
Q 042296 1151 TLFSKNELPDSLEHLEVGICSKLKFLSCSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHK 1230 (1446)
Q Consensus 1151 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 1230 (1446)
....+|.....+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+.+
T Consensus 511 ---------------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 569 (968)
T PLN00113 511 ---------------------LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569 (968)
T ss_pred ---------------------ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence 22222333334567777888888888888888888889999999988888888888888
Q ss_pred CCcccEEEEeccCCCcccCCCCCCcccccceeccccc
Q 042296 1231 LRHLQEVGIWSCGNLVSFPEGGLPSANLTKLQITWCD 1267 (1446)
Q Consensus 1231 l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~ 1267 (1446)
+++|++|++++|+..+.+|... .+.++....+.++.
T Consensus 570 l~~L~~l~ls~N~l~~~~p~~~-~~~~~~~~~~~~n~ 605 (968)
T PLN00113 570 VESLVQVNISHNHLHGSLPSTG-AFLAINASAVAGNI 605 (968)
T ss_pred CcccCEEeccCCcceeeCCCcc-hhcccChhhhcCCc
Confidence 8889999998888777787542 22233334444443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.7e-26 Score=242.06 Aligned_cols=245 Identities=25% Similarity=0.310 Sum_probs=163.4
Q ss_pred HHHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcc
Q 042296 562 SILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLI 641 (1446)
Q Consensus 562 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 641 (1446)
.+.+++-++..|.||++++|.+.++|.+++.+..++.|+.++|++.++|+.++.+.+|..|+.++| ...++|.+|+.+.
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~ 137 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLL 137 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHh
Confidence 344566678888888888888888888888888888888888888888888888888888888886 5778888888888
Q ss_pred cceeecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCC
Q 042296 642 KLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNL 721 (1446)
Q Consensus 642 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L 721 (1446)
.|..|+..+|+ +..+|.+++.+.+|..|..-.. ...+.+....+
T Consensus 138 ~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-------------------------------~l~~l~~~~i~---- 181 (565)
T KOG0472|consen 138 DLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-------------------------------KLKALPENHIA---- 181 (565)
T ss_pred hhhhhhccccc-cccCchHHHHHHHHHHhhcccc-------------------------------chhhCCHHHHH----
Confidence 88888888777 7788888777776666521100 00001111111
Q ss_pred ceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCc
Q 042296 722 KVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKL 801 (1446)
Q Consensus 722 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 801 (1446)
++.|++|+...|..+.+|..++. +.+|..|+|..|+. ..+|.|+.+
T Consensus 182 -------------------------------m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nki-~~lPef~gc 227 (565)
T KOG0472|consen 182 -------------------------------MKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNKI-RFLPEFPGC 227 (565)
T ss_pred -------------------------------HHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhccc-ccCCCCCcc
Confidence 33455555555556667777765 77777778877763 456778888
Q ss_pred CccceeecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCC-
Q 042296 802 LSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPE- 880 (1446)
Q Consensus 802 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~- 880 (1446)
..|++|++.. +.++.++.+.... ++++..|++.+| +++ ..|.
T Consensus 228 s~L~Elh~g~-N~i~~lpae~~~~----------------------------------L~~l~vLDLRdN-klk-e~Pde 270 (565)
T KOG0472|consen 228 SLLKELHVGE-NQIEMLPAEHLKH----------------------------------LNSLLVLDLRDN-KLK-EVPDE 270 (565)
T ss_pred HHHHHHHhcc-cHHHhhHHHHhcc----------------------------------cccceeeecccc-ccc-cCchH
Confidence 8888888754 3444444332211 556666666666 555 5564
Q ss_pred --CCCCccEEEEeccC--ChhhcCCCCCcccEEEEeccc
Q 042296 881 --RLPSLEILVIQSCE--ELLVSIRRLPALCKFEISGCK 915 (1446)
Q Consensus 881 --~l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~ 915 (1446)
.+.+|+.|++++|. .+|.+++++ .|+.|.+.||+
T Consensus 271 ~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 23556666666654 355667777 77777777766
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=9.9e-22 Score=261.08 Aligned_cols=311 Identities=23% Similarity=0.304 Sum_probs=179.2
Q ss_pred cccEEEeccCCCCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCCccccCCCCCCCccEEEEe
Q 042296 1034 SLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYITSVQLPASLKHVEIE 1113 (1446)
Q Consensus 1034 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~sL~~L~l~ 1113 (1446)
+|+.|.+.++ .++.+|....+.+|+.|++.+|. +..+|..+.. +++|+.|++++|..++.+|....+++|+.|++.
T Consensus 590 ~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~~--l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKLWDGVHS--LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-cccccccccc--CCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence 3555555553 34445544445555566665554 3444443322 233666666665555555555555566666666
Q ss_pred cCCCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCCcCCceeecccCcccccccCCCCccccceeeecc
Q 042296 1114 DCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHLEVGICSKLKFLSCSGNLPQALKFICVFR 1193 (1446)
Q Consensus 1114 ~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~l~~ 1193 (1446)
+|..+..++. .+..+++|+.|++.+|..+..++... .+++|+.|.+++|..++.+|. .+.+|+.|++++
T Consensus 666 ~c~~L~~lp~-------si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~ 734 (1153)
T PLN03210 666 DCSSLVELPS-------SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDE 734 (1153)
T ss_pred CCCCccccch-------hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCC
Confidence 6665555542 23345556666666666665544332 345666666666666665543 234566666666
Q ss_pred CCCchhhhhhhcCCCCccEEEeccccCccc-------cCccCCCCCcccEEEEeccCCCcccCCCCCCcccccceecccc
Q 042296 1194 CSKLESIAERLDNNTSLEVFKIGCCDNLKI-------LPGGLHKLRHLQEVGIWSCGNLVSFPEGGLPSANLTKLQITWC 1266 (1446)
Q Consensus 1194 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-------lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c 1266 (1446)
+. ++.+|..+ .+++|+.|.+.+|..... .|......++|++|++++|+.+..+|..+.++++|+.|++++|
T Consensus 735 n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 735 TA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred Cc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 54 44555443 466677776665432111 1111223457777777777777777777777777777777777
Q ss_pred cCccccccc--CCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcceeeecCcCC
Q 042296 1267 DKLEALPEG--MNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLHD 1344 (1446)
Q Consensus 1267 ~~l~~lp~~--l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 1344 (1446)
.+++.+|.. +++|+.|++++|..+..+|. .+++|+.|+++++.+ ..++. .+..+++|+.|++++|++
T Consensus 813 ~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n~i-~~iP~----si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 813 INLETLPTGINLESLESLDLSGCSRLRTFPD------ISTNISDLNLSRTGI-EEVPW----WIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred CCcCeeCCCCCccccCEEECCCCCccccccc------cccccCEeECCCCCC-ccChH----HHhcCCCCCEEECCCCCC
Confidence 777777763 56777777777777776664 345777777777654 23332 256677777777777776
Q ss_pred ccccCcccccCCCcccccceecccccCCccC
Q 042296 1345 VVSFSPQELGTTLPASLTHLWIYDFQNLECL 1375 (1446)
Q Consensus 1345 l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l 1375 (1446)
+..++.... -..+|+.|++++|..+..+
T Consensus 882 L~~l~~~~~---~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 882 LQRVSLNIS---KLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCccCcccc---cccCCCeeecCCCcccccc
Confidence 666654211 1234555556665555433
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.1e-24 Score=250.58 Aligned_cols=244 Identities=23% Similarity=0.314 Sum_probs=149.5
Q ss_pred ccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCC-CCCccEEEEeecCCcccCCccccCCCCCCc
Q 042296 1006 LSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAAL-PSQLRIISIQYCNALKSLPVTWMHDTNTSL 1084 (1446)
Q Consensus 1006 ~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L 1084 (1446)
.+.+|++++++.+ .+..+|. ++..+.+|+.+.+.+| .+..+|...+ ..+|+.|.+..|. +..+|........ |
T Consensus 239 ~p~nl~~~dis~n-~l~~lp~-wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~s--L 312 (1081)
T KOG0618|consen 239 VPLNLQYLDISHN-NLSNLPE-WIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKS--L 312 (1081)
T ss_pred ccccceeeecchh-hhhcchH-HHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccce--e
Confidence 4568899999998 6888884 8899999999999885 5577776444 5778888888887 6777765554444 8
Q ss_pred cEEEEEecCCCccccCCCCCCCccEEEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCCcCCc
Q 042296 1085 ETLKVYGCNLLTYITSVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEH 1164 (1446)
Q Consensus 1085 ~~L~l~~~~~l~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 1164 (1446)
++|+|..|.... +|... +..++. ++..
T Consensus 313 ~tLdL~~N~L~~-lp~~~----l~v~~~------------------------------------------------~l~~ 339 (1081)
T KOG0618|consen 313 RTLDLQSNNLPS-LPDNF----LAVLNA------------------------------------------------SLNT 339 (1081)
T ss_pred eeeeehhccccc-cchHH----HhhhhH------------------------------------------------HHHH
Confidence 899988875432 22100 000000 0000
Q ss_pred eeecccCcccccc-cCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCc-cCCCCCcccEEEEecc
Q 042296 1165 LEVGICSKLKFLS-CSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPG-GLHKLRHLQEVGIWSC 1242 (1446)
Q Consensus 1165 L~l~~c~~L~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~c 1242 (1446)
+.. .|.++..+| ......+.|+.|.+.+|.......+.+.+...|+.|+|++|. +..+|+ .+.++..|++|+++||
T Consensus 340 ln~-s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 340 LNV-SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred Hhh-hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccc
Confidence 000 011111111 122334566777777776666666667777777777777753 344554 3567777777777777
Q ss_pred CCCcccCCCCCCcccccceecccccCcccccc--cCCccceEeeCCCCCcccccccCcCCCCC-CCcceEEEccCCC
Q 042296 1243 GNLVSFPEGGLPSANLTKLQITWCDKLEALPE--GMNSLRELNIGGLASMVCFPVEADGAMFP-SNLQSLDIHDTKI 1316 (1446)
Q Consensus 1243 ~~l~~lp~~~~~~~~L~~L~l~~c~~l~~lp~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~-~~L~~L~l~~~~~ 1316 (1446)
+++.+|.....+..|++|...+ +.+..+|+ .+++|+.++++. +.+..... .+..| ++|++||+++|..
T Consensus 418 -kL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l---~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 418 -KLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSC-NNLSEVTL---PEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -hhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEeccc-chhhhhhh---hhhCCCcccceeeccCCcc
Confidence 6777777777777777776654 44556664 456677777754 33332221 11244 6777777777775
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-22 Score=220.29 Aligned_cols=357 Identities=20% Similarity=0.227 Sum_probs=199.7
Q ss_pred eEEEEeCCCCcccc-CccccCCCCCceeeccCccccccCcccccccccceeeccCccccccc-cccccCcccceeecccC
Q 042296 573 LKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNST 650 (1446)
Q Consensus 573 Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~ 650 (1446)
-+.||+++|.+..+ +..|.++++|+.+++..|.++.+|...+...+|+.|+|.+| .+..+ .+++..++.|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhh
Confidence 45688888887776 56677888888888888888888876667777888888876 45555 34577778888888887
Q ss_pred CCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeee
Q 042296 651 TNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTC 730 (1446)
Q Consensus 651 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 730 (1446)
|. +..+|.. .+....++++|+|++|.
T Consensus 159 N~-is~i~~~-----------------------------------------------------sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 159 NL-ISEIPKP-----------------------------------------------------SFPAKVNIKKLNLASNR 184 (873)
T ss_pred ch-hhcccCC-----------------------------------------------------CCCCCCCceEEeecccc
Confidence 76 5555521 12223455666666554
Q ss_pred CCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCC-CCCCCCcCccceeec
Q 042296 731 NTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTS-LPSIGKLLSLKHLEV 809 (1446)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L 809 (1446)
.++.. ...|..+.+|..|.++.|.++.+|...+. .+++|+.|+|..|.+... .-.|.+|++|+.|.+
T Consensus 185 It~l~-----------~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 185 ITTLE-----------TGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred ccccc-----------cccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 44221 12233444555566666666555544432 255555555555542211 124455555555555
Q ss_pred ccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCC-C---CCCCc
Q 042296 810 CRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFP-E---RLPSL 885 (1446)
Q Consensus 810 ~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~---~l~~L 885 (1446)
..|..-.--...|++ +.++++|++..| +++ .+- + .+.+|
T Consensus 253 qrN~I~kL~DG~Fy~-----------------------------------l~kme~l~L~~N-~l~-~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYG-----------------------------------LEKMEHLNLETN-RLQ-AVNEGWLFGLTSL 295 (873)
T ss_pred hhcCcccccCcceee-----------------------------------ecccceeecccc-hhh-hhhcccccccchh
Confidence 544322222222333 445555555554 332 111 1 23445
Q ss_pred cEEEEeccCC---hhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCCCcceeeecccc
Q 042296 886 EILVIQSCEE---LLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEELEIANID 962 (1446)
Q Consensus 886 ~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~ 962 (1446)
+.|+++.|.. -+..+...++|++|+++.|..-. +..+.+..+..|++|.+++ +
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-----------------------l~~~sf~~L~~Le~LnLs~-N 351 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-----------------------LDEGSFRVLSQLEELNLSH-N 351 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEecccccccc-----------------------CChhHHHHHHHhhhhcccc-c
Confidence 5555555432 12344556666677666654221 1122222344444444444 2
Q ss_pred cchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccccCCcccEEEecc
Q 042296 963 ELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYN 1042 (1446)
Q Consensus 963 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~ 1042 (1446)
.+.++..+ .+..+++|++|++++..- ++..++....+..+++|++|++.+| .+..+|..+|..+++|++|++.+
T Consensus 352 si~~l~e~---af~~lssL~~LdLr~N~l--s~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 352 SIDHLAEG---AFVGLSSLHKLDLRSNEL--SWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred chHHHHhh---HHHHhhhhhhhcCcCCeE--EEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC
Confidence 23333222 344455555555554321 1222233455667889999999988 68888888999999999999988
Q ss_pred CCCCcccCCCCC-CCCccEEEEe
Q 042296 1043 CSSLVCFPEAAL-PSQLRIISIQ 1064 (1446)
Q Consensus 1043 c~~l~~l~~~~~-~~~L~~L~l~ 1064 (1446)
| -+.++....| +-.|+.|.+.
T Consensus 426 N-aiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 426 N-AIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred C-cceeecccccccchhhhhhhc
Confidence 5 5666655555 2356666554
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=4.8e-23 Score=239.45 Aligned_cols=99 Identities=35% Similarity=0.419 Sum_probs=91.0
Q ss_pred CceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeeccc
Q 042296 570 LHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNS 649 (1446)
Q Consensus 570 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 649 (1446)
.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|.|.+| .+..+|.++..+++|+.|+++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 3349999999999999999999999999999999999999999999999999999986 699999999999999999999
Q ss_pred CCCcccccCCccccccccccc
Q 042296 650 TTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 650 ~~~~~~~~p~~i~~L~~L~~L 670 (1446)
.|. ...+|..+..++.+..+
T Consensus 123 ~N~-f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 123 FNH-FGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred hhc-cCCCchhHHhhhHHHHH
Confidence 998 78889888877777666
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.4e-22 Score=223.46 Aligned_cols=314 Identities=25% Similarity=0.307 Sum_probs=212.7
Q ss_pred ccceEEEeecCCCccccccccccCCCCcceecccccccCCCCcchhHHHHhhhcCceeEEEEeCCCCccccCccccCCCC
Q 042296 516 KSLRHLSYIPGGHDGVKRFADFDDTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFSLCGYQISELPNSVGDLRY 595 (1446)
Q Consensus 516 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 595 (1446)
.++.|+++..+.. ...+..+.+++.||++++..+... ...+|.++|+++.|.+||||+|.+.+.|..+..-++
T Consensus 55 qkLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~N~LK-----nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRDNNLK-----NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKN 127 (1255)
T ss_pred hhhhhhhhhhhhh--HhhhhhhccchhhHHHhhhccccc-----cCCCCchhcccccceeeecchhhhhhcchhhhhhcC
Confidence 3567777765533 233556788999999988776532 346899999999999999999999999999999999
Q ss_pred CceeeccCccccccCccc-ccccccceeeccCccccccccccccCcccceeecccCCCccccc-CCcccccccccccCce
Q 042296 596 LRYLNLSRTCIEILPDSI-NKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEM-PRGIGKLTFLQTLCNF 673 (1446)
Q Consensus 596 Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~ 673 (1446)
+-+|+||+|+|..+|.++ -+|+.|-+||||+| .+..+|..+..|.+|++|+|++|. +... -..+..|++|++|...
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcc
Confidence 999999999999999764 69999999999997 699999999999999999999997 3222 1334456666666322
Q ss_pred EecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCC
Q 042296 674 AVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPH 753 (1446)
Q Consensus 674 ~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~ 753 (1446)
... .....++..+..+.+|..++++.|... .+++.+..+
T Consensus 206 ~Tq-----------------------------RTl~N~Ptsld~l~NL~dvDlS~N~Lp------------~vPecly~l 244 (1255)
T KOG0444|consen 206 NTQ-----------------------------RTLDNIPTSLDDLHNLRDVDLSENNLP------------IVPECLYKL 244 (1255)
T ss_pred ccc-----------------------------chhhcCCCchhhhhhhhhccccccCCC------------cchHHHhhh
Confidence 111 111223445666677777777765443 356667777
Q ss_pred CCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeecccccce-eEeCccccCCCCCCCC
Q 042296 754 QNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEVCRMNRV-KSLGSQFYGNGCPSPF 831 (1446)
Q Consensus 754 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l-~~i~~~~~~~~~~~~~ 831 (1446)
++|+.|++++|.++.+.-..+. ..+|++|+++.|.. ..+| .+..++.|+.|.+.+|+.. +-++..+ +.+
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~~--W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI------GKL 315 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEGE--WENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI------GKL 315 (1255)
T ss_pred hhhheeccCcCceeeeeccHHH--Hhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccch------hhh
Confidence 8888888888887776544332 56788888888764 4455 6778888888887665421 1111110 113
Q ss_pred CCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCC---CCCCccEEEEeccCCh
Q 042296 832 PCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPE---RLPSLEILVIQSCEEL 896 (1446)
Q Consensus 832 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l 896 (1446)
..|+.+...+ + .-+..|.++.. |+.|+.|.++.| .+. ++|. .++.|+.|++.+|+++
T Consensus 316 ~~Levf~aan-N-~LElVPEglcR----C~kL~kL~L~~N-rLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 IQLEVFHAAN-N-KLELVPEGLCR----CVKLQKLKLDHN-RLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHhhc-c-ccccCchhhhh----hHHHHHhccccc-cee-echhhhhhcCCcceeeccCCcCc
Confidence 3333333333 1 22233333332 777888888777 444 5664 3566677777777655
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=4.8e-21 Score=210.65 Aligned_cols=377 Identities=16% Similarity=0.183 Sum_probs=231.9
Q ss_pred EEEEeCCCCccccC-ccccCC--CCCceeeccCcccccc-CcccccccccceeeccCccccccccccccCcccceeeccc
Q 042296 574 KVFSLCGYQISELP-NSVGDL--RYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNS 649 (1446)
Q Consensus 574 r~L~L~~~~i~~lp-~~i~~L--~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 649 (1446)
+.||++++.+..+. ..+... ..-+.||+++|++..+ +..|.+|+||+.+++..| .+..+|.......+|++|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeee
Confidence 56778877776541 111111 3456799999998866 567889999999999887 588888877777779999988
Q ss_pred CCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEee
Q 042296 650 TTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWT 729 (1446)
Q Consensus 650 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 729 (1446)
+|. +.++-. ..+.-++.|++|+|+.|
T Consensus 134 ~N~-I~sv~s-----------------------------------------------------e~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 134 HNL-ISSVTS-----------------------------------------------------EELSALPALRSLDLSRN 159 (873)
T ss_pred ccc-cccccH-----------------------------------------------------HHHHhHhhhhhhhhhhc
Confidence 886 443321 11223345566666655
Q ss_pred eCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceee
Q 042296 730 CNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLE 808 (1446)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 808 (1446)
.....+ ...+..-.++++|++++|.++.+...-+. .+.+|..|.|++|....-.+ .|.+||.|+.|+
T Consensus 160 ~is~i~-----------~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 160 LISEIP-----------KPSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhccc-----------CCCCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 443221 12333447899999999998877544332 37899999999998654333 788899999999
Q ss_pred cccccceeEe-CccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCC----CCCC
Q 042296 809 VCRMNRVKSL-GSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFP----ERLP 883 (1446)
Q Consensus 809 L~~~~~l~~i-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~ 883 (1446)
|..|. ++.+ +..|.| +++|+.|.+..| ++. .+. -.+.
T Consensus 228 LnrN~-irive~ltFqg-----------------------------------L~Sl~nlklqrN-~I~-kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 228 LNRNR-IRIVEGLTFQG-----------------------------------LPSLQNLKLQRN-DIS-KLDDGAFYGLE 269 (873)
T ss_pred ccccc-eeeehhhhhcC-----------------------------------chhhhhhhhhhc-Ccc-cccCcceeeec
Confidence 98753 3332 222222 455555555554 222 121 1456
Q ss_pred CccEEEEeccCCh---hhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCCCcceeeecc
Q 042296 884 SLEILVIQSCEEL---LVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEELEIAN 960 (1446)
Q Consensus 884 ~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~ 960 (1446)
++++|+++.|... ..++-.+.+|+.|+++.|..-... +. .-...++|+.|++++
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-~d----------------------~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-ID----------------------SWSFTQKLKELDLSS 326 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheee-cc----------------------hhhhcccceeEeccc
Confidence 7888999887633 446778899999999987644321 11 112467888888876
Q ss_pred cccchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCc--cccccCCcccEE
Q 042296 961 IDELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQ--TSLSLINSLKEI 1038 (1446)
Q Consensus 961 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~--~~~~~l~~L~~L 1038 (1446)
+.++.+.++ .+..+..|+.|.++... +..+- ...+..+++|++|++++|.....+.. ..|..+++|+.|
T Consensus 327 -N~i~~l~~~---sf~~L~~Le~LnLs~Ns-i~~l~----e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 327 -NRITRLDEG---SFRVLSQLEELNLSHNS-IDHLA----EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred -cccccCChh---HHHHHHHhhhhcccccc-hHHHH----hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 345544433 34455566666665432 22221 13345566777777776644332222 245667777777
Q ss_pred EeccCCCCcccCCCCC--CCCccEEEEeecCCcccCCccccCCCCCCccEEEEEe
Q 042296 1039 GIYNCSSLVCFPEAAL--PSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYG 1091 (1446)
Q Consensus 1039 ~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~ 1091 (1446)
.+.+ +++++++...+ ++.|+.|++.+|.+-+.-|..|... .|++|.+..
T Consensus 398 ~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m---~Lk~Lv~nS 448 (873)
T KOG4194|consen 398 RLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM---ELKELVMNS 448 (873)
T ss_pred eecC-ceeeecchhhhccCcccceecCCCCcceeecccccccc---hhhhhhhcc
Confidence 7776 46666666444 5667777777777555555555443 255554443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=3.9e-22 Score=219.89 Aligned_cols=366 Identities=22% Similarity=0.269 Sum_probs=202.6
Q ss_pred CceeEEEEeCCCCcc--ccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeec
Q 042296 570 LHRLKVFSLCGYQIS--ELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLN 647 (1446)
Q Consensus 570 l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 647 (1446)
++..|-.|+++|.++ .+|.++..|++++.|.|..+++..+|+.++.|.+|++|.+++| .+..+-.++..|+.||.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHh
Confidence 456677888888876 6788888888888888888888888888888888888888887 4666667778888888888
Q ss_pred ccCCC-cccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEE
Q 042296 648 NSTTN-SLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLL 726 (1446)
Q Consensus 648 l~~~~-~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 726 (1446)
+..|+ +-..+|..|-+|..|.+| +|
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~l------------------------------------------------------DL 110 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTIL------------------------------------------------------DL 110 (1255)
T ss_pred hhccccccCCCCchhcccccceee------------------------------------------------------ec
Confidence 88775 123566666666555555 22
Q ss_pred EeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccce
Q 042296 727 QWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKH 806 (1446)
Q Consensus 727 ~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 806 (1446)
+.|.. .+++..+...+++-.|++++|++..+|..+.. .+..|-.|+|++|....-.|.+..+..|+.
T Consensus 111 ShNqL------------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 111 SHNQL------------REVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred chhhh------------hhcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 22211 12333344445556666666666666665543 256666677777654443345666777777
Q ss_pred eecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCC---CCC
Q 042296 807 LEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPE---RLP 883 (1446)
Q Consensus 807 L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~ 883 (1446)
|.|++|+....--.. ..++.+|+.|++++-+.--.-+|..+.+ +.+|..++++.| ++. .+|. .++
T Consensus 178 L~Ls~NPL~hfQLrQ------LPsmtsL~vLhms~TqRTl~N~Ptsld~----l~NL~dvDlS~N-~Lp-~vPecly~l~ 245 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQ------LPSMTSLSVLHMSNTQRTLDNIPTSLDD----LHNLRDVDLSEN-NLP-IVPECLYKLR 245 (1255)
T ss_pred hhcCCChhhHHHHhc------CccchhhhhhhcccccchhhcCCCchhh----hhhhhhcccccc-CCC-cchHHHhhhh
Confidence 777766422100000 0112233333333222211222222222 566666676666 443 4443 234
Q ss_pred CccEEEEeccCC--hhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCCCcceeeeccc
Q 042296 884 SLEILVIQSCEE--LLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEELEIANI 961 (1446)
Q Consensus 884 ~L~~L~l~~~~~--l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~ 961 (1446)
+|+.|++++|.. +....+...+|+.|+++.|.
T Consensus 246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ---------------------------------------------- 279 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ---------------------------------------------- 279 (1255)
T ss_pred hhheeccCcCceeeeeccHHHHhhhhhhccccch----------------------------------------------
Confidence 444444444432 11222223334444444332
Q ss_pred ccchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccccCCcccEEEec
Q 042296 962 DELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIY 1041 (1446)
Q Consensus 962 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~ 1041 (1446)
++.++. .+..++.|++|...+. .+.....+..++.+.+|+.+..++| .+.-+|. .+..+..|+.|.++
T Consensus 280 --Lt~LP~----avcKL~kL~kLy~n~N----kL~FeGiPSGIGKL~~Levf~aanN-~LElVPE-glcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 280 --LTVLPD----AVCKLTKLTKLYANNN----KLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE-GLCRCVKLQKLKLD 347 (1255)
T ss_pred --hccchH----HHhhhHHHHHHHhccC----cccccCCccchhhhhhhHHHHhhcc-ccccCch-hhhhhHHHHHhccc
Confidence 222111 1223333333333221 1112222344555666666666665 5666666 66777777777776
Q ss_pred cCCCCcccCCC-CCCCCccEEEEeecCCcccCCc
Q 042296 1042 NCSSLVCFPEA-ALPSQLRIISIQYCNALKSLPV 1074 (1446)
Q Consensus 1042 ~c~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~p~ 1074 (1446)
.| .+..+|.. .+++.|+.|++..|+.+---|.
T Consensus 348 ~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 348 HN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cc-ceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 64 44445553 3467777777777776654443
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.2e-22 Score=213.46 Aligned_cols=228 Identities=23% Similarity=0.214 Sum_probs=179.1
Q ss_pred hhHHHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccC
Q 042296 560 AYSILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGN 639 (1446)
Q Consensus 560 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 639 (1446)
..+.|+.+.++..++.|+.++|.++++|..++.+..|+.|+.++|.+.++|++|+.+..|+.|+..+| .+..+|.+++.
T Consensus 80 l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~ 158 (565)
T KOG0472|consen 80 LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVN 158 (565)
T ss_pred hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999987 69999999999
Q ss_pred cccceeecccCCCcccccCCcccccccccccCceEecCCC-CCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCC
Q 042296 640 LIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDS-GSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKK 718 (1446)
Q Consensus 640 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~-~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~ 718 (1446)
+.+|..|++.+|. +..+|+..-+|+.|++|+...+.-.. ...++.+.+|..|. +.-.++ . +...|.++
T Consensus 159 ~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly--L~~Nki-------~-~lPef~gc 227 (565)
T KOG0472|consen 159 LSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY--LRRNKI-------R-FLPEFPGC 227 (565)
T ss_pred HHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH--hhhccc-------c-cCCCCCcc
Confidence 9999999999998 88888876679999999654432221 23344444443332 111111 1 11246667
Q ss_pred CCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCC
Q 042296 719 KNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSI 798 (1446)
Q Consensus 719 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l 798 (1446)
..|.+|++..|... .-..+....++++..|+++.|+..++|..+.. +.+|.+|++++|....-.+.+
T Consensus 228 s~L~Elh~g~N~i~-----------~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 228 SLLKELHVGENQIE-----------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred HHHHHHHhcccHHH-----------hhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCCccc
Confidence 77777777654322 11223455788999999999999999998875 889999999999876655589
Q ss_pred CCcCccceeeccccc
Q 042296 799 GKLLSLKHLEVCRMN 813 (1446)
Q Consensus 799 ~~l~~L~~L~L~~~~ 813 (1446)
|++ .|+.|.+.+|+
T Consensus 295 gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNP 308 (565)
T ss_pred ccc-eeeehhhcCCc
Confidence 999 99999999876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=6.3e-13 Score=162.73 Aligned_cols=114 Identities=26% Similarity=0.315 Sum_probs=61.7
Q ss_pred cccceecccccCcccccccCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcce
Q 042296 1257 NLTKLQITWCDKLEALPEGMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQR 1336 (1446)
Q Consensus 1257 ~L~~L~l~~c~~l~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~ 1336 (1446)
+|+.|++++ ++++.+|....+|+.|++.++ .+..+|. .+++|+.|++++|.+. .++. ..++|+.
T Consensus 343 ~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N-~L~~LP~------l~~~L~~LdLs~N~Lt-~LP~-------l~s~L~~ 406 (788)
T PRK15387 343 GLQELSVSD-NQLASLPTLPSELYKLWAYNN-RLTSLPA------LPSGLKELIVSGNRLT-SLPV-------LPSELKE 406 (788)
T ss_pred ccceEecCC-CccCCCCCCCcccceehhhcc-ccccCcc------cccccceEEecCCccc-CCCC-------cccCCCE
Confidence 344444443 233334433334444444432 2333332 2345666666665532 2221 1245667
Q ss_pred eeecCcCCccccCcccccCCCcccccceecccccCCccCccCCCCCCCcceeecccCC
Q 042296 1337 LSIGGLHDVVSFSPQELGTTLPASLTHLWIYDFQNLECLSSVGQNLTSLVYLWLYACP 1394 (1446)
Q Consensus 1337 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1394 (1446)
|++++| .+..+|. .|.+|+.|+++++ .++.+|..+.++++|+.|++++++
T Consensus 407 LdLS~N-~LssIP~------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 407 LMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EEccCC-cCCCCCc------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 777774 3555543 3456777777774 567788777788888888888754
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=1.2e-12 Score=160.28 Aligned_cols=254 Identities=19% Similarity=0.141 Sum_probs=169.3
Q ss_pred ceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecccC
Q 042296 571 HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNST 650 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 650 (1446)
..-.+|+|+++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446678999999999998876 4899999999999999863 578999999997 57788853 46788899998
Q ss_pred CCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeee
Q 042296 651 TNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTC 730 (1446)
Q Consensus 651 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 730 (1446)
|. +..+|.... +|+.|....+ .+ ..+ +. ..++|+.|+++.|.
T Consensus 272 N~-L~~Lp~lp~---~L~~L~Ls~N------~L------------------t~L-------P~---~p~~L~~LdLS~N~ 313 (788)
T PRK15387 272 NP-LTHLPALPS---GLCKLWIFGN------QL------------------TSL-------PV---LPPGLQELSVSDNQ 313 (788)
T ss_pred Cc-hhhhhhchh---hcCEEECcCC------cc------------------ccc-------cc---cccccceeECCCCc
Confidence 87 777775332 3333311100 00 000 00 12467888887765
Q ss_pred CCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceeecc
Q 042296 731 NTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLEVC 810 (1446)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 810 (1446)
....+ . .+.+|+.|++++|....+|.. ..+|+.|+|++|.+. .+|.+ .++|+.|+++
T Consensus 314 L~~Lp-------------~--lp~~L~~L~Ls~N~L~~LP~l-----p~~Lq~LdLS~N~Ls-~LP~l--p~~L~~L~Ls 370 (788)
T PRK15387 314 LASLP-------------A--LPSELCKLWAYNNQLTSLPTL-----PSGLQELSVSDNQLA-SLPTL--PSELYKLWAY 370 (788)
T ss_pred cccCC-------------C--CcccccccccccCcccccccc-----ccccceEecCCCccC-CCCCC--Ccccceehhh
Confidence 44221 0 124577788888887777742 347888888887654 35533 2467777777
Q ss_pred cccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCCCCCCccEEEE
Q 042296 811 RMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPERLPSLEILVI 890 (1446)
Q Consensus 811 ~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l 890 (1446)
+|. +..++. ...+|+.|++.+. .++.+. . ..++|+.|++++| .++ .+|..+.+|+.|++
T Consensus 371 ~N~-L~~LP~---------l~~~L~~LdLs~N-~Lt~LP-~-------l~s~L~~LdLS~N-~Ls-sIP~l~~~L~~L~L 429 (788)
T PRK15387 371 NNR-LTSLPA---------LPSGLKELIVSGN-RLTSLP-V-------LPSELKELMVSGN-RLT-SLPMLPSGLLSLSV 429 (788)
T ss_pred ccc-cccCcc---------cccccceEEecCC-cccCCC-C-------cccCCCEEEccCC-cCC-CCCcchhhhhhhhh
Confidence 653 333321 1346777877763 343321 1 1467888999988 676 67876678888888
Q ss_pred eccC--ChhhcCCCCCcccEEEEeccc
Q 042296 891 QSCE--ELLVSIRRLPALCKFEISGCK 915 (1446)
Q Consensus 891 ~~~~--~l~~~l~~l~~L~~L~l~~~~ 915 (1446)
++|. .+|..+..+++|+.|++++|+
T Consensus 430 s~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 430 YRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccCcccccChHHhhccCCCeEECCCCC
Confidence 8876 467777888889999998876
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=1.5e-14 Score=153.13 Aligned_cols=101 Identities=26% Similarity=0.378 Sum_probs=66.2
Q ss_pred EEEEeCCCCccccC-ccccCCCCCceeeccCcccccc-CcccccccccceeeccCcccccccccc-ccCcccceeecccC
Q 042296 574 KVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNST 650 (1446)
Q Consensus 574 r~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~ 650 (1446)
..++|..|.|+.|| .+|+.+++||.||||+|.|+.| |..|..|..|-.|-+.+++.++.+|+. |++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 34566777777774 5677777777777777777765 667777777766666665567777755 67777777777766
Q ss_pred CCcccccCC-cccccccccccCceEe
Q 042296 651 TNSLEEMPR-GIGKLTFLQTLCNFAV 675 (1446)
Q Consensus 651 ~~~~~~~p~-~i~~L~~L~~L~~~~~ 675 (1446)
|. +..++. .+..|.+|..|..+++
T Consensus 150 n~-i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 150 NH-INCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred hh-hcchhHHHHHHhhhcchhcccch
Confidence 65 555543 3556666666644443
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=2.4e-14 Score=151.65 Aligned_cols=125 Identities=24% Similarity=0.235 Sum_probs=101.2
Q ss_pred hhHHHHhhh-cCceeEEEEeCCCCcccc-CccccCCCCCceeeccC-ccccccCc-ccccccccceeeccCccccccc-c
Q 042296 560 AYSILQRLL-KLHRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSR-TCIEILPD-SINKLYNLHTLLLEDCDRLKKL-C 634 (1446)
Q Consensus 560 ~~~~~~~~~-~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p 634 (1446)
...+|+..| .+++||.|||++|.|+.| |+.|.+|..|-.|-+.+ |+|+.+|. .|++|..|+.|.+.-|. +.-+ .
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~ 157 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQ 157 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhH
Confidence 456788888 999999999999999998 99999999988887777 89999996 68999999999999874 5555 4
Q ss_pred ccccCcccceeecccCCCcccccCC-cccccccccccCceEecCCCCCChhhh
Q 042296 635 ADMGNLIKLHHLNNSTTNSLEEMPR-GIGKLTFLQTLCNFAVGKDSGSGLQDL 686 (1446)
Q Consensus 635 ~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~L 686 (1446)
..+..|++|..|.+..|. +..++. .+..+.+++++..-.........+.++
T Consensus 158 ~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred HHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchh
Confidence 558999999999999987 888887 588888888885444433333444443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=2.5e-14 Score=133.15 Aligned_cols=108 Identities=31% Similarity=0.415 Sum_probs=64.6
Q ss_pred HHHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCcccc-ccccccccCc
Q 042296 562 SILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRL-KKLCADMGNL 640 (1446)
Q Consensus 562 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~-~~lp~~i~~L 640 (1446)
.+|+.+.++++|.+|++.+|+|.++|.+++.|+.||.|+++-|++..+|..|+.++.|++|||.+|... ..+|..|..+
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHH
Confidence 345555566666666666666666666666666666666666666666666666666666666655322 2345556666
Q ss_pred ccceeecccCCCcccccCCccccccccccc
Q 042296 641 IKLHHLNNSTTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 641 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
+.|+.|+++.|. .+.+|..+|+|++||.|
T Consensus 127 ~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 127 TTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred HHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 666666666655 55566666666666655
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=4e-12 Score=157.22 Aligned_cols=179 Identities=20% Similarity=0.248 Sum_probs=111.7
Q ss_pred ceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecccC
Q 042296 571 HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNST 650 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 650 (1446)
.+...|+++++.++.+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 356788888888888887765 578999999999988887665 58999999987 4778887654 4788899988
Q ss_pred CCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeee
Q 042296 651 TNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTC 730 (1446)
Q Consensus 651 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 730 (1446)
|. +..+|..+. ++|+.|.... +.+.. .+..+ ..+|+.|+++.|.
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~------------------------N~L~~-------LP~~l--~~sL~~L~Ls~N~ 294 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFH------------------------NKISC-------LPENL--PEELRYLSVYDNS 294 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcC------------------------CccCc-------ccccc--CCCCcEEECCCCc
Confidence 87 777876553 3455552110 00000 00111 1356667776654
Q ss_pred CCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeec
Q 042296 731 NTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEV 809 (1446)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 809 (1446)
....+ ..+ +++|+.|++++|....+|..+ .++|+.|++++|.+.. +| .+. ++|+.|++
T Consensus 295 Lt~LP------------~~l--p~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~L 353 (754)
T PRK15370 295 IRTLP------------AHL--PSGITHLNVQSNSLTALPETL----PPGLKTLEAGENALTS-LPASLP--PELQVLDV 353 (754)
T ss_pred cccCc------------ccc--hhhHHHHHhcCCccccCCccc----cccceeccccCCcccc-CChhhc--CcccEEEC
Confidence 43211 111 135677777777766666543 3567777777776433 44 222 56677777
Q ss_pred cccc
Q 042296 810 CRMN 813 (1446)
Q Consensus 810 ~~~~ 813 (1446)
++|+
T Consensus 354 s~N~ 357 (754)
T PRK15370 354 SKNQ 357 (754)
T ss_pred CCCC
Confidence 6653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=1.4e-13 Score=128.22 Aligned_cols=104 Identities=28% Similarity=0.385 Sum_probs=87.3
Q ss_pred hhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCccccee
Q 042296 566 RLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHH 645 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 645 (1446)
.++++..+..|-|++|.++.+|..|..|.+|+.|++++|+|+++|.+|+.|++|++|+++-| .+..+|.+|+.++.|++
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 44566777788899999999999999999999999999999999999999999999999987 68899999999999999
Q ss_pred ecccCCCcc-cccCCccccccccccc
Q 042296 646 LNNSTTNSL-EEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 646 L~l~~~~~~-~~~p~~i~~L~~L~~L 670 (1446)
||+..|+.- ..+|..|..|+.|+.|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHH
Confidence 999988622 3466666666555555
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=2.8e-11 Score=149.82 Aligned_cols=178 Identities=16% Similarity=0.231 Sum_probs=116.1
Q ss_pred eeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecccCC
Q 042296 572 RLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 651 (1446)
.|+.|+|++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++| .+..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcCC
Confidence 57778888888888876654 478888888888887776554 36888888877 4667776654 47788888877
Q ss_pred CcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeC
Q 042296 652 NSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCN 731 (1446)
Q Consensus 652 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 731 (1446)
. +..+|..+. .+|+.|....+ .+. .+ +..+ ..+|+.|+++.|..
T Consensus 273 ~-L~~LP~~l~--~sL~~L~Ls~N------~Lt------------------~L-------P~~l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 273 K-ISCLPENLP--EELRYLSVYDN------SIR------------------TL-------PAHL--PSGITHLNVQSNSL 316 (754)
T ss_pred c-cCccccccC--CCCcEEECCCC------ccc------------------cC-------cccc--hhhHHHHHhcCCcc
Confidence 6 667776554 35555522111 000 00 0001 12466677766544
Q ss_pred CCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeecc
Q 042296 732 TDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEVC 810 (1446)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 810 (1446)
...+ .. .+++|+.|++++|..+.+|..+ .++|+.|++++|.+. .+| .+ .++|+.|+++
T Consensus 317 t~LP------------~~--l~~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs 375 (754)
T PRK15370 317 TALP------------ET--LPPGLKTLEAGENALTSLPASL----PPELQVLDVSKNQIT-VLPETL--PPTITTLDVS 375 (754)
T ss_pred ccCC------------cc--ccccceeccccCCccccCChhh----cCcccEEECCCCCCC-cCChhh--cCCcCEEECC
Confidence 3221 11 1368999999999998898765 468999999999764 455 23 2678888888
Q ss_pred ccc
Q 042296 811 RMN 813 (1446)
Q Consensus 811 ~~~ 813 (1446)
+|.
T Consensus 376 ~N~ 378 (754)
T PRK15370 376 RNA 378 (754)
T ss_pred CCc
Confidence 764
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=2.9e-11 Score=152.08 Aligned_cols=104 Identities=32% Similarity=0.364 Sum_probs=83.1
Q ss_pred cCceeEEEEeCCCC--ccccCc-cccCCCCCceeeccCcc-ccccCcccccccccceeeccCccccccccccccCcccce
Q 042296 569 KLHRLKVFSLCGYQ--ISELPN-SVGDLRYLRYLNLSRTC-IEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLH 644 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~--i~~lp~-~i~~L~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 644 (1446)
..+.|++|-+.+|. +..++. .|..|+.||+|||++|. +.+||++|+.|.+||+|+++++ .+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 44568888888886 666654 36779999999999775 6789999999999999999985 6889999999999999
Q ss_pred eecccCCCcccccCCcccccccccccCce
Q 042296 645 HLNNSTTNSLEEMPRGIGKLTFLQTLCNF 673 (1446)
Q Consensus 645 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 673 (1446)
||++..+..+..+|..+..|++|++|..+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred eeccccccccccccchhhhcccccEEEee
Confidence 99999887666666556668888888443
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=1.8e-09 Score=144.54 Aligned_cols=273 Identities=17% Similarity=0.210 Sum_probs=168.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCC------------CCCCHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQNV------------DSLDFDK 253 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~------------~~~~~~~ 253 (1446)
.+.|.|++|.||||++..+... ++.++|+++.. ..+...+...++..+...... ...+...
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS 107 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH
Confidence 4578999999999999998752 23699999964 446677777777777422110 0122233
Q ss_pred HHHHHHHHcC--CceEEEEEECCCCCChhhHHHhcccc-cCCCCCcEEEEEccChH-H--HHhhCCCCceecC----CCC
Q 042296 254 LQVELKKQLS--QKKFLLVLDDVWNENYNDWIDLSRPF-EAGAPGSKIVVTTRNQA-V--VAIMGTVPAYPLK----ELS 323 (1446)
Q Consensus 254 ~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~~~~~l-~~~~~gs~iivTtR~~~-v--~~~~~~~~~~~l~----~L~ 323 (1446)
....+...+. +++++||+||+...+.....+....+ .....+.++|||||... . ..........++. +|+
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~ 187 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFD 187 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCC
Confidence 3333433443 68999999999654322333333232 22345678989999742 1 1111112244555 899
Q ss_pred hHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccCCCC-cccccchh
Q 042296 324 DEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWDLPE-ERCDILPA 402 (1446)
Q Consensus 324 ~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~-~~~~~~~~ 402 (1446)
.+|+.++|....... . -.+.+.+|.+.++|.|+++..++..++...... .... +.+.. ....+...
T Consensus 188 ~~e~~~ll~~~~~~~----~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~ 254 (903)
T PRK04841 188 HQEAQQFFDQRLSSP----I---EAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSA----RRLAGINASHLSDY 254 (903)
T ss_pred HHHHHHHHHhccCCC----C---CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhh----HhhcCCCchhHHHH
Confidence 999999998654221 1 134567799999999999999988775543210 0001 11111 11234444
Q ss_pred hh-hhhccCCHHHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCcccc-ccCCCCc
Q 042296 403 LK-VSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQK-SSNDTLR 480 (1446)
Q Consensus 403 l~-~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~~~~~ 480 (1446)
+. -.++.||++.+..+...|+++ .+..+..-. +.. .+.+...+++|.+.+++.. .+++...
T Consensus 255 l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~--------~~~~~~~L~~l~~~~l~~~~~~~~~~~ 317 (903)
T PRK04841 255 LVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTG--------EENGQMRLEELERQGLFIQRMDDSGEW 317 (903)
T ss_pred HHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcC--------CCcHHHHHHHHHHCCCeeEeecCCCCE
Confidence 33 347899999999999999997 334332221 111 1224677999999999764 3334457
Q ss_pred eEehhhHHHHHHHhh
Q 042296 481 FVMHDLVNDLAQWAA 495 (1446)
Q Consensus 481 ~~mH~lv~~~~~~~~ 495 (1446)
|+.|++++++.+...
T Consensus 318 yr~H~L~r~~l~~~l 332 (903)
T PRK04841 318 FRYHPLFASFLRHRC 332 (903)
T ss_pred EehhHHHHHHHHHHH
Confidence 889999999998765
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.91 E-value=5.1e-08 Score=109.56 Aligned_cols=179 Identities=19% Similarity=0.157 Sum_probs=112.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH----HH-c
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELK----KQ-L 262 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~----~~-l 262 (1446)
+.|+|.+|+||||+++.+++..... .+ .++|+ +....+..+++..|+..++.+.. ..+.......+. .. .
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999853311 11 12233 33345778899999998876543 223233333333 22 2
Q ss_pred CCceEEEEEECCCCCChhhHHHhccccc---CCCCCcEEEEEccChHHHHhhC----------CCCceecCCCChHhHHH
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFE---AGAPGSKIVVTTRNQAVVAIMG----------TVPAYPLKELSDEDCLN 329 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~---~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~~~ 329 (1446)
.+++++||+||+|......++.+..... .......|++|... ....... ....+.+++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 6788999999998876555665442211 12223345555543 2222221 12357899999999999
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhh
Q 042296 330 VFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLL 372 (1446)
Q Consensus 330 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L 372 (1446)
++...+...+......--.+..+.|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9887664322111111225778899999999999999988765
No 26
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.80 E-value=1.6e-08 Score=113.37 Aligned_cols=174 Identities=25% Similarity=0.359 Sum_probs=88.8
Q ss_pred hcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCCCCCCcccccceecccccCcccccccCCccceEe
Q 042296 1204 LDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPEGGLPSANLTKLQITWCDKLEALPEGMNSLRELN 1283 (1446)
Q Consensus 1204 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~lp~~l~~L~~L~ 1283 (1446)
+..+..++.|++++| .+..+|. -.++|++|.+++|..++.+|..+. ++|+.|++++|..+..+|.+ |+.|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s---Le~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES---VRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc---cceEE
Confidence 445677777777777 5566662 123577777777777777775442 46777777777666666653 44444
Q ss_pred eCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcceeeecCcCCccccCcccccCCCcccccc
Q 042296 1284 IGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLHDVVSFSPQELGTTLPASLTH 1363 (1446)
Q Consensus 1284 l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 1363 (1446)
+.. .....++. +|++|+.|.+.+++... ...++ ..+|++|++
T Consensus 119 L~~-n~~~~L~~------LPssLk~L~I~~~n~~~--------------------------~~~lp-----~~LPsSLk~ 160 (426)
T PRK15386 119 IKG-SATDSIKN------VPNGLTSLSINSYNPEN--------------------------QARID-----NLISPSLKT 160 (426)
T ss_pred eCC-CCCccccc------CcchHhheecccccccc--------------------------ccccc-----cccCCcccE
Confidence 432 22111211 34455555553322100 00000 134555566
Q ss_pred eecccccCCccCccCCCCCCCcceeecccCCCc-cccCCCCCCCccceEeccCCchhHHhhccCCC
Q 042296 1364 LWIYDFQNLECLSSVGQNLTSLVYLWLYACPKL-KYFSDKGLPTSLLQLYIKDCPLIEEKCRKDQG 1428 (1446)
Q Consensus 1364 L~~~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~~sL~~L~i~~c~~L~~~~~~~~g 1428 (1446)
|.+++|..+ .+|..+. .+|+.|+++.+... -.++...+|.++ .|.+.+|..+...--++.|
T Consensus 161 L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~ 222 (426)
T PRK15386 161 LSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKN 222 (426)
T ss_pred EEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHhhccc
Confidence 655555433 2232222 46666666553211 123444566666 7777777555544344433
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.76 E-value=4.5e-07 Score=108.15 Aligned_cols=271 Identities=14% Similarity=0.122 Sum_probs=154.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-CCCCCCCHHHHHHHHHHHcC--C
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTD-QNVDSLDFDKLQVELKKQLS--Q 264 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~l~~~l~--~ 264 (1446)
+-|+|.+|+|||++++.++++.......-..+++.+....+...++.+|+.++... ......+.++....+.+.++ +
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERD 137 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 36999999999999999998532222123456666666677889999999998762 22123356667777777764 4
Q ss_pred ceEEEEEECCCCCC----hhhHHHhcccccCCCCCcE--EEEEccChHHHHhhC-------CCCceecCCCChHhHHHHH
Q 042296 265 KKFLLVLDDVWNEN----YNDWIDLSRPFEAGAPGSK--IVVTTRNQAVVAIMG-------TVPAYPLKELSDEDCLNVF 331 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~----~~~~~~~~~~l~~~~~gs~--iivTtR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf 331 (1446)
+..+||+|+++.-. ...+..+...+.. ..+++ ||.++....+..... ....+.+.+++.++..+++
T Consensus 138 ~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il 216 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDIL 216 (394)
T ss_pred CEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHH
Confidence 57899999996531 1223333332221 12333 566666544433221 1245789999999999999
Q ss_pred HhhccCC--CCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhh--c---CCC--ChhHHHHHHhccccCCCCcccccchh
Q 042296 332 TQHSLGT--RDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLL--R---GKT--DQRDWEDVLNCKIWDLPEERCDILPA 402 (1446)
Q Consensus 332 ~~~a~~~--~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L--~---~~~--~~~~w~~~l~~~~~~~~~~~~~~~~~ 402 (1446)
..++... ...-.+..++.+++......|..+.|+.++-.+. + +.. +.+....+++.. -...
T Consensus 217 ~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~----------~~~~ 286 (394)
T PRK00411 217 KDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS----------EIVH 286 (394)
T ss_pred HHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH----------HHHH
Confidence 8776321 1112223334444444444566778877764322 1 111 344555444421 1122
Q ss_pred hhhhhccCCHHHHHHHhhhccCCC--CceeChHHHHHH--HHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCcccc
Q 042296 403 LKVSYYYLSPRLKQCFTYCSLLPK--DYEFKEEEIILL--WIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQK 473 (1446)
Q Consensus 403 l~~sy~~L~~~~k~cf~~~~~fp~--~~~i~~~~li~~--w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 473 (1446)
..-.+..||.+.|..+..++..-+ ...+....+... .+++.+-. ..........|+++|.+.|+|+.
T Consensus 287 ~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~----~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 287 LSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY----EPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC----CcCcHHHHHHHHHHHHhcCCeEE
Confidence 344678999998876655443211 123444444422 22221110 01123445678999999999986
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=1.2e-09 Score=126.88 Aligned_cols=84 Identities=25% Similarity=0.264 Sum_probs=46.2
Q ss_pred cCceeEEEEeCCCCcc-----ccCccccCCCCCceeeccCccccc-------cCcccccccccceeeccCcccccccccc
Q 042296 569 KLHRLKVFSLCGYQIS-----ELPNSVGDLRYLRYLNLSRTCIEI-------LPDSINKLYNLHTLLLEDCDRLKKLCAD 636 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 636 (1446)
.+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 5555777777777652 344455556667777776665542 2234455556666666665433333333
Q ss_pred ccCccc---ceeecccCCC
Q 042296 637 MGNLIK---LHHLNNSTTN 652 (1446)
Q Consensus 637 i~~L~~---L~~L~l~~~~ 652 (1446)
+..+.+ |++|++++|.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHhccCcccEEEeeCCc
Confidence 444433 6666665554
No 29
>PF05729 NACHT: NACHT domain
Probab=98.69 E-value=6.5e-08 Score=99.88 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=87.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhcc----CCceEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDH----FDLKAWTCVSEDFDIT---RITKSILNSIGTDQNVDSLDFDKLQVELK 259 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 259 (1446)
.+.|+|.+|+||||+++.++.+-..... +...+|+..+...+.. .+...|..+..... ..... .+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~---~~~ 74 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEE---LLQ 74 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHH---HHH
Confidence 4578999999999999999875322222 4456677766544332 34444444333211 11111 111
Q ss_pred HH-cCCceEEEEEECCCCCChh-------hHHHhcccccC--CCCCcEEEEEccChHH---HHhhCCCCceecCCCChHh
Q 042296 260 KQ-LSQKKFLLVLDDVWNENYN-------DWIDLSRPFEA--GAPGSKIVVTTRNQAV---VAIMGTVPAYPLKELSDED 326 (1446)
Q Consensus 260 ~~-l~~~~~LlVlDdv~~~~~~-------~~~~~~~~l~~--~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~ 326 (1446)
.. -+.++++||+|++++.... .+.++...+.. ..++++|+||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 11 2578999999999664321 12222222222 2468999999998765 3334455679999999999
Q ss_pred HHHHHHhhc
Q 042296 327 CLNVFTQHS 335 (1446)
Q Consensus 327 ~~~lf~~~a 335 (1446)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997653
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=1.3e-09 Score=121.95 Aligned_cols=180 Identities=22% Similarity=0.282 Sum_probs=131.7
Q ss_pred hHHHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCc
Q 042296 561 YSILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNL 640 (1446)
Q Consensus 561 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 640 (1446)
..+|..+..+..|..+.|..|.+..+|..+++|..|.||||+.|++..+|..++.|+ |+.|-+++| +++.+|.+|+.+
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~ 165 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLL 165 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccc
Confidence 345666667777888888888888899999999999999999999999998888776 888888886 689999999988
Q ss_pred ccceeecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCC
Q 042296 641 IKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKN 720 (1446)
Q Consensus 641 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~ 720 (1446)
..|.+||.+.|. +..+|..++.|++|+.|....+.
T Consensus 166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-------------------------------------------- 200 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-------------------------------------------- 200 (722)
T ss_pred hhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh--------------------------------------------
Confidence 899999999888 88888888888888887221100
Q ss_pred CceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC---C
Q 042296 721 LKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP---S 797 (1446)
Q Consensus 721 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~---~ 797 (1446)
. ..+++.+. .-.|..|+++.|++..+|..|.. +..|++|.|.+|....... .
T Consensus 201 ----------l------------~~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 201 ----------L------------EDLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred ----------h------------hhCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCCCChHHHHh
Confidence 0 01112222 11366777777887888877766 8888888888887543221 2
Q ss_pred CCCcCccceeecccc
Q 042296 798 IGKLLSLKHLEVCRM 812 (1446)
Q Consensus 798 l~~l~~L~~L~L~~~ 812 (1446)
-|...-.++|+...|
T Consensus 256 kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQAC 270 (722)
T ss_pred ccceeeeeeecchhc
Confidence 344555566666655
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.65 E-value=1.7e-09 Score=125.56 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHhhhcCceeEEEEeCCCCccc-------cCccccCCCCCceeeccCcccc-ccCcccccccc---cceeeccCcccc-
Q 042296 563 ILQRLLKLHRLKVFSLCGYQISE-------LPNSVGDLRYLRYLNLSRTCIE-ILPDSINKLYN---LHTLLLEDCDRL- 630 (1446)
Q Consensus 563 ~~~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~~~- 630 (1446)
++..+...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+. ..+..+..+.+ |++|++++|...
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 33344466667777777766542 2344566777777777777765 33444444444 777777776422
Q ss_pred ---ccccccccCc-ccceeecccCCC
Q 042296 631 ---KKLCADMGNL-IKLHHLNNSTTN 652 (1446)
Q Consensus 631 ---~~lp~~i~~L-~~L~~L~l~~~~ 652 (1446)
..++..+..+ ++|+.|++++|.
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 1223344555 677777777776
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.59 E-value=5.1e-06 Score=98.04 Aligned_cols=274 Identities=13% Similarity=0.096 Sum_probs=151.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchh-ccC---CceEEEEeCCCCCHHHHHHHHHHHhc---CCCCCCCCCHHHHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQ-DHF---DLKAWTCVSEDFDITRITKSILNSIG---TDQNVDSLDFDKLQVELKK 260 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~l~~ 260 (1446)
+-|+|++|+|||++++.++++.... ... -..+|+.+....+...++..|+.++. ........+..+....+.+
T Consensus 43 i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (365)
T TIGR02928 43 VFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYK 122 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 4689999999999999999743211 111 13567777777778889999999984 3222122344555566666
Q ss_pred HcC--CceEEEEEECCCCCC---hhhHHHhcccc-cCCC--CCcEEEEEccChHHHHhhC-------CCCceecCCCChH
Q 042296 261 QLS--QKKFLLVLDDVWNEN---YNDWIDLSRPF-EAGA--PGSKIVVTTRNQAVVAIMG-------TVPAYPLKELSDE 325 (1446)
Q Consensus 261 ~l~--~~~~LlVlDdv~~~~---~~~~~~~~~~l-~~~~--~gs~iivTtR~~~v~~~~~-------~~~~~~l~~L~~~ 325 (1446)
.+. +++++||||+++.-. ......+.... .... ....+|.+|........+. ....+.+++.+.+
T Consensus 123 ~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~ 202 (365)
T TIGR02928 123 ELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAE 202 (365)
T ss_pred HHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHH
Confidence 653 568899999996541 11122222221 1111 2334555555443322211 1245889999999
Q ss_pred hHHHHHHhhccC-CCCCCCChhHHHHHHHHHHHhCCch-hHHHHHHhhh----c-CC--CChhHHHHHHhccccCCCCcc
Q 042296 326 DCLNVFTQHSLG-TRDFNMHKSLEEIGKKIVIKCNGLP-LAAKTLGGLL----R-GK--TDQRDWEDVLNCKIWDLPEER 396 (1446)
Q Consensus 326 ~~~~lf~~~a~~-~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~L----~-~~--~~~~~w~~~l~~~~~~~~~~~ 396 (1446)
+..+++..++.. .......++..+....++....|.| .|+.++-.+. . +. -+.+....+.+..
T Consensus 203 e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~-------- 274 (365)
T TIGR02928 203 ELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI-------- 274 (365)
T ss_pred HHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--------
Confidence 999999887631 1111233344445555777777887 4443332211 1 11 1233333333211
Q ss_pred cccchhhhhhhccCCHHHHHHHhhhccC--CCCceeChHHHHHHH-HhCCCCCCCCCCCCHHHHHHHHHHHHHhcCcccc
Q 042296 397 CDILPALKVSYYYLSPRLKQCFTYCSLL--PKDYEFKEEEIILLW-IAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQK 473 (1446)
Q Consensus 397 ~~~~~~l~~sy~~L~~~~k~cf~~~~~f--p~~~~i~~~~li~~w-~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 473 (1446)
-.....-.+..||.+.|..+..++.. .++..+....+...+ .....+.. ....+.....+++.|...|+|+.
T Consensus 275 --~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~---~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 275 --EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGV---DPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCC---CCCcHHHHHHHHHHHHhcCCeEE
Confidence 01223346678899888666554321 133345556555532 11111111 12334667788999999999987
Q ss_pred c
Q 042296 474 S 474 (1446)
Q Consensus 474 ~ 474 (1446)
.
T Consensus 350 ~ 350 (365)
T TIGR02928 350 E 350 (365)
T ss_pred E
Confidence 4
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=1.8e-09 Score=116.51 Aligned_cols=283 Identities=16% Similarity=0.215 Sum_probs=151.9
Q ss_pred ccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCCcccc---CCCCCCCccEEEEecCCCCcccccccccccCCCCC
Q 042296 1058 LRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYIT---SVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRD 1134 (1446)
Q Consensus 1058 L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~ 1134 (1446)
|+.|.+++|...+.-+.......+|++++|.+.+|..++... .....+.|+++++..|.+++.....++ ...
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l-----a~g 214 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL-----AEG 214 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH-----HHh
Confidence 444555555544443333333444556666666665554322 123445566666666666665543322 124
Q ss_pred CCcccEEEeccCCchhhc--ccCCCCCCcCCceeecccCccc--ccccCCCCccccceeeeccCCCchhh--hhhhcCCC
Q 042296 1135 TSLLEHLRIVNCQSLITL--FSKNELPDSLEHLEVGICSKLK--FLSCSGNLPQALKFICVFRCSKLESI--AERLDNNT 1208 (1446)
Q Consensus 1135 l~~L~~L~l~~c~~l~~~--~~~~~~~~~L~~L~l~~c~~L~--~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~ 1208 (1446)
+++|++|.++.|+....- -....-...++.+...+|..++ .+.........+..+++..|..++.. ...-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 566777777777655330 0000011224444444555443 22222233345666677777766543 33446688
Q ss_pred CccEEEeccccCccccCc--cCCCCCcccEEEEeccCCCcccC--CCCCCcccccceecccccCcc-----cccccCCcc
Q 042296 1209 SLEVFKIGCCDNLKILPG--GLHKLRHLQEVGIWSCGNLVSFP--EGGLPSANLTKLQITWCDKLE-----ALPEGMNSL 1279 (1446)
Q Consensus 1209 ~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~c~~l~~lp--~~~~~~~~L~~L~l~~c~~l~-----~lp~~l~~L 1279 (1446)
.|+.|+.++|...+..+- --.+..+|+.|.+.+|.+++..- .-..+++.|+.+++.+|.... ++..+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 888888888877654331 13466888888888887766432 122345788888888775433 345577788
Q ss_pred ceEeeCCCCCcccccccC--cCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcceeeecCcCCcccc
Q 042296 1280 RELNIGGLASMVCFPVEA--DGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLHDVVSF 1348 (1446)
Q Consensus 1280 ~~L~l~~c~~l~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 1348 (1446)
+.|.+++|..+..-..-. ....-...|..+.+++|+.+..-.- ..+..+++|+.+++-.|.++.+-
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L---e~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL---EHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH---HHHhhCcccceeeeechhhhhhh
Confidence 888888876655431100 0001223566666677665442221 11444556666666665554443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.53 E-value=6.1e-08 Score=97.18 Aligned_cols=109 Identities=28% Similarity=0.344 Sum_probs=50.7
Q ss_pred Hhhh-cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCccc-ccccccceeeccCcccccccc--ccccCc
Q 042296 565 QRLL-KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSI-NKLYNLHTLLLEDCDRLKKLC--ADMGNL 640 (1446)
Q Consensus 565 ~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~~~~lp--~~i~~L 640 (1446)
+.+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|+|+.+++.+ ..+++|++|++++| .+..+- ..+..+
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSL 112 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-
T ss_pred cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcC
Confidence 3444 5778888999999988885 4778888999999999998887655 46888999999887 455442 335678
Q ss_pred ccceeecccCCCcccccCCc----ccccccccccCceEec
Q 042296 641 IKLHHLNNSTTNSLEEMPRG----IGKLTFLQTLCNFAVG 676 (1446)
Q Consensus 641 ~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~~ 676 (1446)
++|++|++.+|. +...+.. +..+++|+.|+.-.+.
T Consensus 113 ~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 113 PKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 888889998887 5544432 6677788888655544
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=1.2e-07 Score=113.39 Aligned_cols=103 Identities=33% Similarity=0.458 Sum_probs=91.3
Q ss_pred hhhcCceeEEEEeCCCCccccCccccCCC-CCceeeccCccccccCcccccccccceeeccCccccccccccccCcccce
Q 042296 566 RLLKLHRLKVFSLCGYQISELPNSVGDLR-YLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLH 644 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 644 (1446)
.+..++.+..|++.++.++.+|...+.+. +|++|++++|++..+|..++.+++|+.|++++| .+..+|...+.+++|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 34466889999999999999998888885 999999999999999988999999999999998 5899998888999999
Q ss_pred eecccCCCcccccCCccccccccccc
Q 042296 645 HLNNSTTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 645 ~L~l~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
.|++++|. +..+|..++.+..|++|
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEEL 214 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhh
Confidence 99999998 88999877777777777
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.45 E-value=1.1e-06 Score=94.85 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=92.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
.-++|.+|+|||+||+.+++. .......+.|+.+.... .... .+.+.++ +.-
T Consensus 42 l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~----------------------~~~~~~~-~~d 93 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP----------------------AVLENLE-QQD 93 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH----------------------HHHhhcc-cCC
Confidence 368999999999999999984 33334456777764210 0000 1111122 234
Q ss_pred EEEEECCCCCC-hhhHHH-hcccccCC-CCCcEEEE-EccC---------hHHHHhhCCCCceecCCCChHhHHHHHHhh
Q 042296 268 LLVLDDVWNEN-YNDWID-LSRPFEAG-APGSKIVV-TTRN---------QAVVAIMGTVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 268 LlVlDdv~~~~-~~~~~~-~~~~l~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
+||+||+|... ..+|+. +...+... ..|..||| |++. +++...+.....+++++++.++.++++.+.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 89999998642 244543 22222211 23556655 4543 466666777778999999999999999998
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHH
Q 042296 335 SLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLG 369 (1446)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 369 (1446)
++..+ ...+ +++..-|++.+.|..-++..+-
T Consensus 174 a~~~~-l~l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 174 AYQRG-IELS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 86443 2222 4566778888887765554433
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=6.1e-07 Score=100.84 Aligned_cols=136 Identities=26% Similarity=0.420 Sum_probs=88.2
Q ss_pred CCCCcccEEEEeccCCCcccCCCCCCcccccceecccccCcccccccCC-ccceEeeCCCCCcccccccCcCCCCCCCcc
Q 042296 1229 HKLRHLQEVGIWSCGNLVSFPEGGLPSANLTKLQITWCDKLEALPEGMN-SLRELNIGGLASMVCFPVEADGAMFPSNLQ 1307 (1446)
Q Consensus 1229 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~lp~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~ 1307 (1446)
..+..++.|++++| .++++|. .+ .+|+.|.+++|.+++.+|..++ +|++|.+.+|..+..+ |.+|+
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~--LP-~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---------P~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV--LP-NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---------PESVR 115 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC--CC-CCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---------ccccc
Confidence 34678899999999 7888882 22 3688888888888888876554 6777777776655433 23455
Q ss_pred eEEEccCCCcchhhhcccCccCCCCCcceeeecCcCCccccCcccccCCCcccccceecccccCC--ccCccCCCCCCCc
Q 042296 1308 SLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLHDVVSFSPQELGTTLPASLTHLWIYDFQNL--ECLSSVGQNLTSL 1385 (1446)
Q Consensus 1308 ~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l--~~l~~~~~~l~~L 1385 (1446)
.|++..+. ...+ ..+|++|+.|.+.+++.. ..+|. .--++|
T Consensus 116 ~L~L~~n~-----------------------------~~~L------~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSL 158 (426)
T PRK15386 116 SLEIKGSA-----------------------------TDSI------KNVPNGLTSLSINSYNPENQARIDN--LISPSL 158 (426)
T ss_pred eEEeCCCC-----------------------------Cccc------ccCcchHhheecccccccccccccc--ccCCcc
Confidence 55543221 1112 125667777777543321 11121 112689
Q ss_pred ceeecccCCCccccCCCCCCCccceEeccCC
Q 042296 1386 VYLWLYACPKLKYFSDKGLPTSLLQLYIKDC 1416 (1446)
Q Consensus 1386 ~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c 1416 (1446)
++|++++|..+. +| .++|.+|++|+++.+
T Consensus 159 k~L~Is~c~~i~-LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 159 KTLSLTGCSNII-LP-EKLPESLQSITLHIE 187 (426)
T ss_pred cEEEecCCCccc-Cc-ccccccCcEEEeccc
Confidence 999999999774 44 459999999999875
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=9.4e-09 Score=111.14 Aligned_cols=285 Identities=14% Similarity=0.177 Sum_probs=149.8
Q ss_pred ceEEEeeCCCCCCCCC---CCCCcCccceeecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCcc
Q 042296 781 LVTLKFQNCHKCTSLP---SIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEA 857 (1446)
Q Consensus 781 L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 857 (1446)
|+.|.+.+|...+.-+ ....+|++++|.+.+|..++.....-.+ ..+++|++|.+..|..++...-.....+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~la~g- 214 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYLAEG- 214 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHHHHh-
Confidence 4555555554333222 2345677777777777655433221111 2267777777777776665443322222
Q ss_pred ccCCcccEEEecCCCCCcC----CCCCCCCCccEEEEeccCChhh-----cCCCCCcccEEEEecccCeeeeCCCCCCce
Q 042296 858 EVFPNLRELHLLRCSKLQG----TFPERLPSLEILVIQSCEELLV-----SIRRLPALCKFEISGCKKVVWRSPTDLGSQ 928 (1446)
Q Consensus 858 ~~~~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l~~-----~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l 928 (1446)
+++|++++++.|+.+++ .+......++.+..++|...+. .-...+.+.++++..|..++......
T Consensus 215 --C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~---- 288 (483)
T KOG4341|consen 215 --CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL---- 288 (483)
T ss_pred --hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH----
Confidence 88888888888887765 2223445566666667764421 12334555666666665554322100
Q ss_pred eeecccccccccccccchhccCCCcceeeecccccchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccc
Q 042296 929 NLVVCRDISEQVFLQGPLKLQLPKLEELEIANIDELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSC 1008 (1446)
Q Consensus 929 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~ 1008 (1446)
+......|+.+..++|.+++.... .....+.++|+.+.++.|..+....... .-.+.+
T Consensus 289 -----------------i~~~c~~lq~l~~s~~t~~~d~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~---l~rn~~ 346 (483)
T KOG4341|consen 289 -----------------IACGCHALQVLCYSSCTDITDEVL--WALGQHCHNLQVLELSGCQQFSDRGFTM---LGRNCP 346 (483)
T ss_pred -----------------HhhhhhHhhhhcccCCCCCchHHH--HHHhcCCCceEEEeccccchhhhhhhhh---hhcCCh
Confidence 111244556666666655443222 1123344666666666666554442221 123456
Q ss_pred cccEEEeecccCccccCc-cccccCCcccEEEeccCCCCcccCC------CCCCCCccEEEEeecCCcccCCccccCCCC
Q 042296 1009 RIEYLELINCQGLVKLPQ-TSLSLINSLKEIGIYNCSSLVCFPE------AALPSQLRIISIQYCNALKSLPVTWMHDTN 1081 (1446)
Q Consensus 1009 ~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~l~~c~~l~~l~~------~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~ 1081 (1446)
.|+.+++..|.....-.. ..-.+++.|++|.+++|..++.-.. ......|+.+.+++|+.++.-... ....+
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c 425 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSIC 425 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhC
Confidence 677777776644332210 1234567777777777766654311 011455777777777755432211 11233
Q ss_pred CCccEEEEEecCCCcccc
Q 042296 1082 TSLETLKVYGCNLLTYIT 1099 (1446)
Q Consensus 1082 ~~L~~L~l~~~~~l~~~~ 1099 (1446)
++|+.+++.+|...+.-+
T Consensus 426 ~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEA 443 (483)
T ss_pred cccceeeeechhhhhhhh
Confidence 557777777777665433
No 39
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.36 E-value=1.4e-05 Score=95.61 Aligned_cols=275 Identities=17% Similarity=0.205 Sum_probs=173.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCC------------CCCCHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-FDITRITKSILNSIGTDQNV------------DSLDFDK 253 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~------------~~~~~~~ 253 (1446)
.+-|.-++|.||||++.+.+. + ...=..++|.+.++. .|+..+...++..++.-.+. ...+...
T Consensus 39 L~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~ 115 (894)
T COG2909 39 LILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES 115 (894)
T ss_pred EEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence 346889999999999998874 1 122346899999765 46888888888888743221 2233444
Q ss_pred HHHHHHHHcC--CceEEEEEECCCCCChhhHHH-hcccccCCCCCcEEEEEccChHHHHhhCC----CCceec----CCC
Q 042296 254 LQVELKKQLS--QKKFLLVLDDVWNENYNDWID-LSRPFEAGAPGSKIVVTTRNQAVVAIMGT----VPAYPL----KEL 322 (1446)
Q Consensus 254 ~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~-~~~~l~~~~~gs~iivTtR~~~v~~~~~~----~~~~~l----~~L 322 (1446)
+...+...+. .++..+||||.--........ +...+.....+-..|||||..--.. .+. ....++ =.+
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~-la~lRlr~~llEi~~~~Lrf 194 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLG-LARLRLRDELLEIGSEELRF 194 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCc-ccceeehhhHHhcChHhhcC
Confidence 5555555554 468999999964332222222 2222333446889999999853111 011 112222 257
Q ss_pred ChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccCCCCcccccch-
Q 042296 323 SDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWDLPEERCDILP- 401 (1446)
Q Consensus 323 ~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~- 401 (1446)
+.+|+-++|.....- +--+..++.+.+...|.+-|+..++=.++.+.+.+.-...+. +..+-+..
T Consensus 195 ~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls-------G~~~~l~dY 260 (894)
T COG2909 195 DTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS-------GAASHLSDY 260 (894)
T ss_pred ChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc-------chHHHHHHH
Confidence 899999999866411 111345677999999999999999988884433332222221 11111111
Q ss_pred hhhhhhccCCHHHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCcccc-ccCCCCc
Q 042296 402 ALKVSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQK-SSNDTLR 480 (1446)
Q Consensus 402 ~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~~~~~ 480 (1446)
...--++.||+++|.-++-+|+++.- -+.|+..- +-++.+...+++|.+++|+-. -+++...
T Consensus 261 L~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg~~ng~amLe~L~~~gLFl~~Ldd~~~W 323 (894)
T COG2909 261 LVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TGEENGQAMLEELERRGLFLQRLDDEGQW 323 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hcCCcHHHHHHHHHhCCCceeeecCCCce
Confidence 12235688999999999999998642 12333322 112446678999999998864 4455668
Q ss_pred eEehhhHHHHHHHhhc
Q 042296 481 FVMHDLVNDLAQWAAG 496 (1446)
Q Consensus 481 ~~mH~lv~~~~~~~~~ 496 (1446)
|+.|.+..||.+....
T Consensus 324 fryH~LFaeFL~~r~~ 339 (894)
T COG2909 324 FRYHHLFAEFLRQRLQ 339 (894)
T ss_pred eehhHHHHHHHHhhhc
Confidence 9999999999875544
No 40
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.36 E-value=7.8e-07 Score=97.85 Aligned_cols=291 Identities=17% Similarity=0.181 Sum_probs=187.2
Q ss_pred cccceeEccCCchHHHHHHHHHcccchhccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 185 VNEAKVYGMGGLGKTTLAQLVYNDARLQDHF-DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 185 ~~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
.+.+.++|.|||||||++-.+.. +...| +.+.++....-.|...+.-.+...++.... +-+.....+.....
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~~~~ 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVRRIG 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----cchHHHHHHHHHHh
Confidence 45678999999999999988876 56667 566677777666777777777776776543 11233445666777
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhCCCCceecCCCChH-hHHHHHHhhccCCC-CC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMGTVPAYPLKELSDE-DCLNVFTQHSLGTR-DF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~-~~ 341 (1446)
++|.++|+||...- ...-..+.-.+..+.+.-.|+.|+|... .......+.+..|+.. ++.++|...+.... ..
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999997321 1112233334444556667889998753 2233456777777764 78999887663222 11
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccC-------CCCcccccchhhhhhhccCCHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWD-------LPEERCDILPALKVSYYYLSPRL 414 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~-------~~~~~~~~~~~l~~sy~~L~~~~ 414 (1446)
.....-......|.++.+|.|++|..+++..+.-. ...-..-++..... ....+....+.+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11222356678899999999999999999888763 22222222211111 11123467789999999999999
Q ss_pred HHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCcccccc-CCCCceEehhhHHHHHHH
Q 042296 415 KQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSS-NDTLRFVMHDLVNDLAQW 493 (1446)
Q Consensus 415 k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~~~~~~~mH~lv~~~~~~ 493 (1446)
+--|..++.|...+.-. -..|.+.|-.. ..+.......+..+++++++...+ .....|+.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998766533 34555554221 012233444577888999887633 223467777777777765
Q ss_pred hhc
Q 042296 494 AAG 496 (1446)
Q Consensus 494 ~~~ 496 (1446)
+..
T Consensus 313 eL~ 315 (414)
T COG3903 313 ELH 315 (414)
T ss_pred HHH
Confidence 544
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.35 E-value=1.7e-07 Score=93.99 Aligned_cols=98 Identities=29% Similarity=0.399 Sum_probs=34.7
Q ss_pred cCceeEEEEeCCCCccccCcccc-CCCCCceeeccCccccccCcccccccccceeeccCccccccccccc-cCcccceee
Q 042296 569 KLHRLKVFSLCGYQISELPNSVG-DLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADM-GNLIKLHHL 646 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L 646 (1446)
+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 5567899999999999884 465 5889999999999999995 5889999999999998 588886655 468999999
Q ss_pred cccCCCcccccC--Cccccccccccc
Q 042296 647 NNSTTNSLEEMP--RGIGKLTFLQTL 670 (1446)
Q Consensus 647 ~l~~~~~~~~~p--~~i~~L~~L~~L 670 (1446)
++++|. +..+- ..++.+++|+.|
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EE
T ss_pred ECcCCc-CCChHHhHHHHcCCCccee
Confidence 999997 55543 223444455544
No 42
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.33 E-value=6.6e-06 Score=94.52 Aligned_cols=250 Identities=16% Similarity=0.126 Sum_probs=132.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDF----DKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~l~~~l 262 (1446)
.+-++|++|+||||+|+.+++. ....+ .++... .......+..++..+....-.-.++. ....+.++..+
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~ 126 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAM 126 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHH
Confidence 3468999999999999999984 22221 112211 11222233344444332210000011 11233445555
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhC--CCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMG--TVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+.+..+|+|+..... .+...++ +.+-|..|||...+..... ....+.+++++.++..+++.+.+...+.
T Consensus 127 e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~ 198 (328)
T PRK00080 127 EDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV 198 (328)
T ss_pred HhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 6666667777654331 1111122 2455667777544333221 1246899999999999999988754322
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccCCCC-cccccchhhhhhhccCCHHHHHHHh
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWDLPE-ERCDILPALKVSYYYLSPRLKQCFT 419 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~-~~~~~~~~l~~sy~~L~~~~k~cf~ 419 (1446)
... .+.+..|++.|+|.|-.+..+...+ ..|...... ..+.. .-......+...|..|++..+..+.
T Consensus 199 -~~~---~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~ 266 (328)
T PRK00080 199 -EID---EEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLR 266 (328)
T ss_pred -CcC---HHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHH
Confidence 222 3567889999999995444444322 122211110 01110 0112334456778889888777775
Q ss_pred -hhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH-HHHhcCcccccc
Q 042296 420 -YCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFK-ELHSRSLFQKSS 475 (1446)
Q Consensus 420 -~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~~ 475 (1446)
....|+.+ .+..+.+.... .. ..+.++..++ .|++.+||+...
T Consensus 267 ~~~~~~~~~-~~~~~~~a~~l------g~------~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 267 TIIEKFGGG-PVGLDTLAAAL------GE------ERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHHcCCC-ceeHHHHHHHH------CC------CcchHHHHhhHHHHHcCCcccCC
Confidence 66677655 45555543332 11 1133444556 899999998643
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.31 E-value=3.2e-08 Score=111.00 Aligned_cols=171 Identities=25% Similarity=0.255 Sum_probs=135.1
Q ss_pred CceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeeccc
Q 042296 570 LHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNS 649 (1446)
Q Consensus 570 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 649 (1446)
+.--...||+.|++..+|..++.+..|..|.|..|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEe
Confidence 3344568899999999999999999999999999999999999999999999999997 5889999888776 8899999
Q ss_pred CCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEee
Q 042296 650 TTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWT 729 (1446)
Q Consensus 650 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 729 (1446)
+|. ++.+|.+|+.+..|..|+...+.
T Consensus 152 NNk-l~~lp~~ig~~~tl~~ld~s~ne----------------------------------------------------- 177 (722)
T KOG0532|consen 152 NNK-LTSLPEEIGLLPTLAHLDVSKNE----------------------------------------------------- 177 (722)
T ss_pred cCc-cccCCcccccchhHHHhhhhhhh-----------------------------------------------------
Confidence 887 99999999866555555211100
Q ss_pred eCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceee
Q 042296 730 CNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLE 808 (1446)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 808 (1446)
....+..+..+..|+.|.+..|....+|..+.. -.|..|+++.|+. ..+| .|.+|..|++|-
T Consensus 178 -------------i~slpsql~~l~slr~l~vrRn~l~~lp~El~~---LpLi~lDfScNki-s~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 178 -------------IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS---LPLIRLDFSCNKI-SYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred -------------hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC---CceeeeecccCce-eecchhhhhhhhheeee
Confidence 011233345566778888888888888887763 3689999998765 4566 799999999999
Q ss_pred ccccc
Q 042296 809 VCRMN 813 (1446)
Q Consensus 809 L~~~~ 813 (1446)
|.+|+
T Consensus 241 LenNP 245 (722)
T KOG0532|consen 241 LENNP 245 (722)
T ss_pred eccCC
Confidence 98765
No 44
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.25 E-value=2.2e-05 Score=89.80 Aligned_cols=247 Identities=15% Similarity=0.097 Sum_probs=131.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV-----DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l 262 (1446)
+.++|++|+|||+||+.+++. ....| ..+........ ..+...+..++...-. +... ....+.+...+
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~l~~~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~ 105 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKP-GDLAAILTNLEEGDVLFIDEIHRLS-PAVEELLYPAM 105 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCc-hhHHHHHHhcccCCEEEEehHhhhC-HHHHHHhhHHH
Confidence 468999999999999999883 22222 12221111111 1222333333322100 0011 12334566666
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhC--CCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMG--TVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+.+..+|+|+.... ..| ...++ +.+-|..||+...+....- ....+.+++++.++..+++.+.+...+.
T Consensus 106 ~~~~~~~v~~~~~~~--~~~---~~~~~---~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~ 177 (305)
T TIGR00635 106 EDFRLDIVIGKGPSA--RSV---RLDLP---PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV 177 (305)
T ss_pred hhhheeeeeccCccc--cce---eecCC---CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC
Confidence 667777777776544 111 11222 3556667777654433221 1245789999999999999988753321
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccCCCC-cccccchhhhhhhccCCHHHHHHHh
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWDLPE-ERCDILPALKVSYYYLSPRLKQCFT 419 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~-~~~~~~~~l~~sy~~L~~~~k~cf~ 419 (1446)
... .+....|++.|+|.|-.+..++..+ |..........+.. .-......+...|..++++.+..+.
T Consensus 178 -~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~ 245 (305)
T TIGR00635 178 -EIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLS 245 (305)
T ss_pred -CcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 222 3556779999999996655444322 11110000000100 0011222256678889888877666
Q ss_pred -hhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH-HHHhcCccccc
Q 042296 420 -YCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFK-ELHSRSLFQKS 474 (1446)
Q Consensus 420 -~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 474 (1446)
..+.++.+ .+..+.+.... | . ....+...++ .|++++||+..
T Consensus 246 al~~~~~~~-~~~~~~ia~~l---g--------~-~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 246 VLIEQFQGG-PVGLKTLAAAL---G--------E-DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHhCCC-cccHHHHHHHh---C--------C-CcchHHHhhhHHHHHcCCcccC
Confidence 55666543 34444333322 1 1 1234566677 69999999754
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=1.7e-07 Score=96.47 Aligned_cols=99 Identities=25% Similarity=0.255 Sum_probs=76.1
Q ss_pred hcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeec
Q 042296 568 LKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLN 647 (1446)
Q Consensus 568 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 647 (1446)
..++.|..|||++|.|+.+..++.-++.+|.|++|+|.|..+-. +..|++|++|||++| .+..+-..-.+|-|.+.|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 36778899999999999998888888999999999999988844 888999999999997 4666655456778888888
Q ss_pred ccCCCcccccCCccccccccccc
Q 042296 648 NSTTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
|++|. ++.+ .++++|-+|..|
T Consensus 359 La~N~-iE~L-SGL~KLYSLvnL 379 (490)
T KOG1259|consen 359 LAQNK-IETL-SGLRKLYSLVNL 379 (490)
T ss_pred hhhhh-Hhhh-hhhHhhhhheec
Confidence 88886 4443 344444444444
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.1e-06 Score=72.06 Aligned_cols=56 Identities=30% Similarity=0.503 Sum_probs=34.8
Q ss_pred eeEEEEeCCCCccccC-ccccCCCCCceeeccCccccccC-cccccccccceeeccCc
Q 042296 572 RLKVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDC 627 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 627 (1446)
+|++|++++|.++.+| ..|.++++|++|++++|.++.+| ..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4566666666666664 45566666666666666666554 35566666666666665
No 47
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.17 E-value=3.1e-06 Score=83.02 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=79.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchh---ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ---DHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
.+.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++.... ...+.+++...+.+.+.
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLIDALD 84 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHHHHH
Confidence 45799999999999999999742110 003456799998888999999999999998765 34567777788888876
Q ss_pred Cc-eEEEEEECCCCC-ChhhHHHhcccccCCCCCcEEEEEccC
Q 042296 264 QK-KFLLVLDDVWNE-NYNDWIDLSRPFEAGAPGSKIVVTTRN 304 (1446)
Q Consensus 264 ~~-~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~ 304 (1446)
.. ..+||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 54 459999999654 4334444433222 567778777654
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=1.7e-06 Score=107.89 Aligned_cols=93 Identities=24% Similarity=0.311 Sum_probs=82.6
Q ss_pred eeEEEEeCCCCcc-ccCccccCCCCCceeeccCcccc-ccCcccccccccceeeccCccccccccccccCcccceeeccc
Q 042296 572 RLKVFSLCGYQIS-ELPNSVGDLRYLRYLNLSRTCIE-ILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNS 649 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 649 (1446)
.++.|+|++|.+. .+|..|+++.+|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 67889999999999999999997 889999999999999999997777899999999999999999
Q ss_pred CCCcccccCCccccc
Q 042296 650 TTNSLEEMPRGIGKL 664 (1446)
Q Consensus 650 ~~~~~~~~p~~i~~L 664 (1446)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 998667888877653
No 49
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.15 E-value=8.3e-06 Score=89.78 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=84.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHH----------HHHhc----CCCC-----CC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSI----------LNSIG----TDQN-----VD 247 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i----------~~~l~----~~~~-----~~ 247 (1446)
.+.|+|+.|+|||+|++++.+... ...+ .++|+...+..... ....+ ...+. .... ..
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESNES-SLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchhhh-HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 357999999999999999998331 1122 34455444443221 11221 11121 1100 00
Q ss_pred CCCHHHHHHHHHHHc--CCceEEEEEECCCCCC------hhhHHHhcccccC--CCCCcEEEEEccChHHHHh-------
Q 042296 248 SLDFDKLQVELKKQL--SQKKFLLVLDDVWNEN------YNDWIDLSRPFEA--GAPGSKIVVTTRNQAVVAI------- 310 (1446)
Q Consensus 248 ~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~------~~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~------- 310 (1446)
..........+.+.+ .+++++||+||+.... ..-...+...+.. ....-.+|+++....+...
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~ 178 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSP 178 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTST
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCc
Confidence 111122222333333 2455999999985442 1111122222222 1234445555554544433
Q ss_pred -hCCCCceecCCCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 042296 311 -MGTVPAYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKT 367 (1446)
Q Consensus 311 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 367 (1446)
.+....+.+++++.+++++++...+-.. ... +.-++...+|...+||.|..|..
T Consensus 179 ~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 179 LFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred cccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 1223459999999999999999865322 111 11245568899999999988764
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.13 E-value=1.2e-05 Score=88.03 Aligned_cols=150 Identities=25% Similarity=0.296 Sum_probs=89.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
..-.||++|+||||||+.+.. .....| ..++-..+-.+-+++++++.. +....+++
T Consensus 50 SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a~-----------------~~~~~gr~ 105 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEAR-----------------KNRLLGRR 105 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHHH-----------------HHHhcCCc
Confidence 345899999999999999987 344443 334433332222333332211 12234899
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEE--EccChHHH---HhhCCCCceecCCCChHhHHHHHHhhccCCC-C
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV--TTRNQAVV---AIMGTVPAYPLKELSDEDCLNVFTQHSLGTR-D 340 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~-~ 340 (1446)
.+|.+|.|..-+..+-+.+... -..|.-|+| ||.++... ...+-..++++++|+.++-.+++.+.+.... .
T Consensus 106 tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rg 182 (436)
T COG2256 106 TILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERG 182 (436)
T ss_pred eEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcC
Confidence 9999999976554554444433 335766666 77776432 2224457899999999999999988432211 1
Q ss_pred CC-CChhH-HHHHHHHHHHhCCchh
Q 042296 341 FN-MHKSL-EEIGKKIVIKCNGLPL 363 (1446)
Q Consensus 341 ~~-~~~~~-~~~~~~i~~~c~glPl 363 (1446)
.. ....+ ++...-+++.++|---
T Consensus 183 l~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 183 LGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred CCcccccCCHHHHHHHHHhcCchHH
Confidence 11 11111 3355567788887653
No 51
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.13 E-value=2.7e-06 Score=91.38 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=59.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCC-----HHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED--FDITRITKSILNSIGTDQNVDSLD-----FDKLQVELK 259 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~~~l~ 259 (1446)
...|+|.+|+|||||++.+|++.... +|+.++|+.+.+. +++.++++.+...+-......+.. .........
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~ 96 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAK 96 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 45799999999999999999975444 8999999998776 799999999933332221111110 111222222
Q ss_pred HH-cCCceEEEEEECCC
Q 042296 260 KQ-LSQKKFLLVLDDVW 275 (1446)
Q Consensus 260 ~~-l~~~~~LlVlDdv~ 275 (1446)
.. -.++++++++|++.
T Consensus 97 ~~~~~G~~vll~iDei~ 113 (249)
T cd01128 97 RLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHCCCCEEEEEECHH
Confidence 22 25899999999993
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.3e-06 Score=95.44 Aligned_cols=128 Identities=19% Similarity=0.131 Sum_probs=84.6
Q ss_pred ccCCCCcceecccccccCCCCcchhHHHHhhh-cCceeEEEEeCCCCccccCcc--ccCCCCCceeeccCcccc--ccCc
Q 042296 537 FDDTEHLRTFLPVMLSNCWGGYLAYSILQRLL-KLHRLKVFSLCGYQISELPNS--VGDLRYLRYLNLSRTCIE--ILPD 611 (1446)
Q Consensus 537 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~--i~~L~~Lr~L~L~~~~i~--~lp~ 611 (1446)
...++++|.|-+..+-. ......-.+. .+++|+.|+|+.|.+...-++ -..+.+|+.|.|+.|.++ .+-.
T Consensus 142 ~k~~~~v~~LdLS~NL~-----~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~ 216 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLF-----HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW 216 (505)
T ss_pred hhhCCcceeecchhhhH-----HhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH
Confidence 45677788774443211 0111222344 889999999999987644222 246788999999999887 3334
Q ss_pred ccccccccceeeccCccccccccccccCcccceeecccCCCcccccC--Cccccccccccc
Q 042296 612 SINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEMP--RGIGKLTFLQTL 670 (1446)
Q Consensus 612 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L 670 (1446)
..-.+++|+.|+|.+|..+..--....-+..|+.|||++|+ +...+ ..++.++.|+.|
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 45678899999999885444333445667889999999988 55555 346666666666
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=2.9e-06 Score=69.58 Aligned_cols=58 Identities=33% Similarity=0.378 Sum_probs=51.6
Q ss_pred CCCceeeccCccccccCc-ccccccccceeeccCcccccccc-ccccCcccceeecccCCC
Q 042296 594 RYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 594 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 652 (1446)
++|++|++++|+++.+|. .|.++++|++|++++| .+..+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 7899999999999998 467776 568999999999999986
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.07 E-value=2.5e-06 Score=101.93 Aligned_cols=108 Identities=27% Similarity=0.347 Sum_probs=92.8
Q ss_pred hHHHHhhhcCc-eeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccC
Q 042296 561 YSILQRLLKLH-RLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGN 639 (1446)
Q Consensus 561 ~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 639 (1446)
.++++....++ +|+.|++++|.+..+|..++.+++|+.|++++|++..+|...+.+.+|+.|++++| .+..+|..+..
T Consensus 129 ~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~ 207 (394)
T COG4886 129 TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIEL 207 (394)
T ss_pred ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhh
Confidence 44555555664 99999999999999988899999999999999999999998889999999999998 69999998888
Q ss_pred cccceeecccCCCcccccCCccccccccccc
Q 042296 640 LIKLHHLNNSTTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 640 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
+..|+.|.+++|. ...++..+++++++..|
T Consensus 208 ~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 208 LSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 8889999999996 55666667777666666
No 55
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.07 E-value=0.00029 Score=85.28 Aligned_cols=270 Identities=13% Similarity=0.108 Sum_probs=139.8
Q ss_pred eeEccCCchHHHHHHHHHcccch---hccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARL---QDHFD--LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
-|+|.+|.|||++++.|.+.... +.... .+++|.+..-.+...+...|+.++............+....+...+.
T Consensus 785 YIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~ 864 (1164)
T PTZ00112 785 YISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK 864 (1164)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh
Confidence 48999999999999999874321 11122 25667766667888899999999855443233334445555555542
Q ss_pred ---CceEEEEEECCCCCCh---hhHHHhcccccCCCCCcEEEE--EccChH--------HHHhhCCCCceecCCCChHhH
Q 042296 264 ---QKKFLLVLDDVWNENY---NDWIDLSRPFEAGAPGSKIVV--TTRNQA--------VVAIMGTVPAYPLKELSDEDC 327 (1446)
Q Consensus 264 ---~~~~LlVlDdv~~~~~---~~~~~~~~~l~~~~~gs~iiv--TtR~~~--------v~~~~~~~~~~~l~~L~~~~~ 327 (1446)
+...+||||+|+.-.. +.+-.+.... ...+++|+| +|...+ +...++ ...+...+++.++-
T Consensus 865 k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~--~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL 941 (1164)
T PTZ00112 865 KDNRNVSILIIDEIDYLITKTQKVLFTLFDWP--TKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEI 941 (1164)
T ss_pred cccccceEEEeehHhhhCccHHHHHHHHHHHh--hccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHH
Confidence 2345899999964321 1122222211 124566555 332211 222222 12466799999999
Q ss_pred HHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCC----hhHHHHHHhccccCCCCcccccchhh
Q 042296 328 LNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTD----QRDWEDVLNCKIWDLPEERCDILPAL 403 (1446)
Q Consensus 328 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~----~~~w~~~l~~~~~~~~~~~~~~~~~l 403 (1446)
.+++..++......-.+..++-+|+.++..-|-.-.||.++-.+...... .+.-..+.... ....+
T Consensus 942 ~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleei----------E~srI 1011 (1164)
T PTZ00112 942 EKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQL----------FDSPL 1011 (1164)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHH----------HhhhH
Confidence 99999887543222233344445554554445556666665554432111 11222221110 01112
Q ss_pred hhhhccCCHHHHHHHhhhccCCC---CceeChHHHHHHH--HhC--C-CCCCCCCCCCHHHHHHHHHHHHHhcCcccccc
Q 042296 404 KVSYYYLSPRLKQCFTYCSLLPK---DYEFKEEEIILLW--IAV--G-FLDQEDNGRESEDLGHMFFKELHSRSLFQKSS 475 (1446)
Q Consensus 404 ~~sy~~L~~~~k~cf~~~~~fp~---~~~i~~~~li~~w--~a~--g-~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 475 (1446)
.-....||.+.|-.+..+...-+ ...++...+.... +++ | .+.. ....+ ....++.+|...|+|...+
T Consensus 1012 ~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv---~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1012 TNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGM---CSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCC---CCcHH-HHHHHHHHHHhcCeEEecC
Confidence 33445788887765543322111 1134444433221 222 1 1111 11222 5667788888888876643
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=3.8e-06 Score=104.72 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=86.9
Q ss_pred cchhHHHHhhhcCceeEEEEeCCCCcc-ccCccccCCCCCceeeccCcccc-ccCcccccccccceeeccCccccccccc
Q 042296 558 YLAYSILQRLLKLHRLKVFSLCGYQIS-ELPNSVGDLRYLRYLNLSRTCIE-ILPDSINKLYNLHTLLLEDCDRLKKLCA 635 (1446)
Q Consensus 558 ~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 635 (1446)
.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|++. .+|+.+++|++|++|+|++|...+.+|.
T Consensus 429 ~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 429 GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 345677888889999999999999997 78999999999999999999998 7899999999999999999987789999
Q ss_pred cccCc-ccceeecccCCCcccccC
Q 042296 636 DMGNL-IKLHHLNNSTTNSLEEMP 658 (1446)
Q Consensus 636 ~i~~L-~~L~~L~l~~~~~~~~~p 658 (1446)
.++.+ .++..+++.+|..+...|
T Consensus 509 ~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 509 ALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred HHhhccccCceEEecCCccccCCC
Confidence 88764 567788888886444333
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=6.6e-07 Score=97.77 Aligned_cols=62 Identities=23% Similarity=0.099 Sum_probs=37.5
Q ss_pred cCCCCCceeeccCccccccCc--ccccccccceeeccCccc--cccccccccCcccceeecccCCC
Q 042296 591 GDLRYLRYLNLSRTCIEILPD--SINKLYNLHTLLLEDCDR--LKKLCADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 591 ~~L~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~--~~~lp~~i~~L~~L~~L~l~~~~ 652 (1446)
.++..||...|.++.+...+. ....+++++.|||+.|-. ...+-.-...|++|+.|+++.|.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 456667777777776665552 456677777777776521 11222224567777777777765
No 58
>PF13173 AAA_14: AAA domain
Probab=98.03 E-value=1.2e-05 Score=78.01 Aligned_cols=118 Identities=22% Similarity=0.226 Sum_probs=77.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+.|.|+.|+||||++++++++.. .-..+++++..+....... +.+ ..+.+.+....++
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccCC
Confidence 457899999999999999987422 2345667766544221100 000 2233444444578
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhh------CCCCceecCCCChHhH
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM------GTVPAYPLKELSDEDC 327 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 327 (1446)
.+|++|++... .+|......+.+..+..+|++|+........- |....+++.+|+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999655 67888777777766678999999987655331 1223578889887763
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.00 E-value=3.4e-05 Score=84.07 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=86.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-|+|..|+|||++|+.+++. ........++++++.-.+ .. . .+...+.+ .-
T Consensus 41 lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~---------------~----~~~~~~~~-~~ 92 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD---------------P----EVLEGLEQ-AD 92 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH---------------H----HHHhhccc-CC
Confidence 468999999999999999973 333334455665542211 00 0 01111222 23
Q ss_pred EEEEECCCCCChh-hHH-HhcccccC-CCCCcEEEEEccChH---------HHHhhCCCCceecCCCChHhHHHHHHhhc
Q 042296 268 LLVLDDVWNENYN-DWI-DLSRPFEA-GAPGSKIVVTTRNQA---------VVAIMGTVPAYPLKELSDEDCLNVFTQHS 335 (1446)
Q Consensus 268 LlVlDdv~~~~~~-~~~-~~~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 335 (1446)
+||+||++..... .|. .+...+.. ...+.+||+||+... +...+.....+++.+++.++...++...+
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 8999999654321 332 23332221 123458999887532 22233334578999999999999888754
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHh
Q 042296 336 LGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGG 370 (1446)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 370 (1446)
-... .... .+..+.+++.++|.|..+.-+..
T Consensus 173 ~~~~-~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 173 ARRG-LQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHcC-CCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 3221 1122 34556677788888877665543
No 60
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=1.9e-06 Score=88.92 Aligned_cols=107 Identities=27% Similarity=0.340 Sum_probs=87.3
Q ss_pred hHHHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCc
Q 042296 561 YSILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNL 640 (1446)
Q Consensus 561 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 640 (1446)
..+-+++--.+.+|+|++++|.|..+-+ +..|.+|+.||||+|.++.+-..-.+|-|.++|.|++| .+..+ .++++|
T Consensus 297 ~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KL 373 (490)
T KOG1259|consen 297 TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKL 373 (490)
T ss_pred hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhh
Confidence 3444455567899999999999988754 88899999999999999888666678899999999997 56666 568899
Q ss_pred ccceeecccCCCcccccC--CcccccccccccC
Q 042296 641 IKLHHLNNSTTNSLEEMP--RGIGKLTFLQTLC 671 (1446)
Q Consensus 641 ~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~ 671 (1446)
.+|..||+++|+ ++.+- .+||+|..|+++.
T Consensus 374 YSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 374 YSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred hhheeccccccc-hhhHHHhcccccccHHHHHh
Confidence 999999999998 66664 5689999888873
No 61
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.98 E-value=1e-05 Score=90.11 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=58.3
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCCHH-----HHHHHHHHH
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF--DITRITKSILNSIGTDQNVDSLDFD-----KLQVELKKQ 261 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~~l~~~ 261 (1446)
.|+|++|+||||||++||++.... +|+.++||.+.+.. ++.++++.|...+-.....++.... .....-+..
T Consensus 173 lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 173 LIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999975444 89999999999887 7888888886433222211111111 111111111
Q ss_pred -cCCceEEEEEECC
Q 042296 262 -LSQKKFLLVLDDV 274 (1446)
Q Consensus 262 -l~~~~~LlVlDdv 274 (1446)
-.+++++|++|++
T Consensus 252 ~e~G~dVlL~iDsI 265 (416)
T PRK09376 252 VEHGKDVVILLDSI 265 (416)
T ss_pred HHcCCCEEEEEECh
Confidence 2689999999999
No 62
>PRK08727 hypothetical protein; Validated
Probab=97.88 E-value=0.00014 Score=78.69 Aligned_cols=146 Identities=16% Similarity=0.101 Sum_probs=86.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.|+|..|+|||+||+.+++. ..+....+.++++.+ ....+. ..+. .+ .+.-
T Consensus 44 l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~------------------~~~~-~l-~~~d 95 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR------------------DALE-AL-EGRS 95 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH------------------HHHH-HH-hcCC
Confidence 579999999999999999884 333334566766432 111111 1111 11 1235
Q ss_pred EEEEECCCCCC-hhhHHH-hcccccC-CCCCcEEEEEccC---------hHHHHhhCCCCceecCCCChHhHHHHHHhhc
Q 042296 268 LLVLDDVWNEN-YNDWID-LSRPFEA-GAPGSKIVVTTRN---------QAVVAIMGTVPAYPLKELSDEDCLNVFTQHS 335 (1446)
Q Consensus 268 LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 335 (1446)
+||+||+.... ...|.. +...+.. ...|..||+|++. +++...+.....+++++++.++-.+++.+++
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 89999985432 123332 2221111 1246679999984 2333344445689999999999999999877
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhCCchhHH
Q 042296 336 LGTRDFNMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
...+ ...+ ++...-|++.++|-.-++
T Consensus 176 ~~~~-l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 176 QRRG-LALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHcC-CCCC---HHHHHHHHHhCCCCHHHH
Confidence 5422 1222 455666888887665443
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=9.7e-06 Score=60.25 Aligned_cols=38 Identities=34% Similarity=0.479 Sum_probs=18.7
Q ss_pred eeEEEEeCCCCccccCccccCCCCCceeeccCcccccc
Q 042296 572 RLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEIL 609 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l 609 (1446)
+|++|++++|.|+.+|..+++|++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34555555555555544455555555555555555443
No 64
>PRK09087 hypothetical protein; Validated
Probab=97.86 E-value=0.00015 Score=77.46 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=84.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.|+|..|+|||+|++.++... ...+++.. .+..+++..+ .+ -
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~----------------------~~--~ 89 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA----------------------AE--G 89 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh----------------------hc--C
Confidence 5799999999999999888632 12233321 1111111111 11 2
Q ss_pred EEEEECCCCC--ChhhHHHhcccccCCCCCcEEEEEccC---------hHHHHhhCCCCceecCCCChHhHHHHHHhhcc
Q 042296 268 LLVLDDVWNE--NYNDWIDLSRPFEAGAPGSKIVVTTRN---------QAVVAIMGTVPAYPLKELSDEDCLNVFTQHSL 336 (1446)
Q Consensus 268 LlVlDdv~~~--~~~~~~~~~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 336 (1446)
+|++||+... +...+..+...+.. .|..||+|++. ++....+.....+++++++.++-.+++.+++-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 7888999542 22333333333332 46789999873 44455566677899999999999999998874
Q ss_pred CCCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 042296 337 GTRDFNMHKSLEEIGKKIVIKCNGLPLAAKT 367 (1446)
Q Consensus 337 ~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 367 (1446)
..+ ...+ +++..-|++.+.|..-++..
T Consensus 168 ~~~-~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 168 DRQ-LYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HcC-CCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 322 2222 45666677777777665553
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.81 E-value=0.00013 Score=86.56 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=88.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH-cCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ-LSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~ 266 (1446)
+-++|++|+||||+|+.+++. .... |+.++.........+++++ ..... ..+++
T Consensus 39 ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~------------------~~~~~~~~g~~ 93 (413)
T PRK13342 39 MILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIE------------------EARQRRSAGRR 93 (413)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHH------------------HHHHhhhcCCc
Confidence 468999999999999999873 2222 3333322111111122222 11111 14578
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEE--EccChHHH--H-hhCCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV--TTRNQAVV--A-IMGTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v~--~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
.+|++|+++.-.....+.+...+.. |..++| ||.+.... . .......+.+.+++.++.++++.+.+.....
T Consensus 94 ~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~- 169 (413)
T PRK13342 94 TILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER- 169 (413)
T ss_pred eEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-
Confidence 8999999987655555555554432 444544 34443211 1 1122367899999999999999876532111
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTLG 369 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~~ 369 (1446)
....--.+....|++.++|.+..+..+.
T Consensus 170 ~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 170 GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 0001124566778999999886654433
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=7.8e-07 Score=91.88 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=36.1
Q ss_pred CCcceEEEeccCCC----CCCcccCcCccCCceEEEeeCCCCCCC--CCCCCCcCccceeecccccce
Q 042296 754 QNLEQFFISGYGGT----KFPIWLGDSYFSNLVTLKFQNCHKCTS--LPSIGKLLSLKHLEVCRMNRV 815 (1446)
Q Consensus 754 ~~L~~L~l~~~~~~----~~p~~~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l 815 (1446)
++|..|+++||.-. .+.... ...++|..|+|++|...+. +..+.+++.|++|.++.|..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~--~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHH--HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 46777777776521 111111 1267888888888775443 125677778888888777643
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00041 Score=79.22 Aligned_cols=152 Identities=15% Similarity=0.248 Sum_probs=94.8
Q ss_pred eeEccCCchHHHHHHHHHccc----chhccCCceEEEEe-CCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 189 KVYGMGGLGKTTLAQLVYNDA----RLQDHFDLKAWTCV-SEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
-++|+.|+||||+|+.+++.. ....|.|...|... +....+.+ .+++.+.+.... ..
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p-----------------~~ 91 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKP-----------------YE 91 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCc-----------------cc
Confidence 478999999999999998732 12345565555442 22222222 222333222111 12
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHH-Hh-hCCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVV-AI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~-~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|+++..+...|..+...+..-..++.+|++|.+.+.. .. ......+.+.++++++....+.+...+
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~---- 167 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND---- 167 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC----
Confidence 456677778876666677888888777666788999888765422 11 122367899999999998877654311
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAK 366 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~ 366 (1446)
.. .+.+..++..++|.|..+.
T Consensus 168 -~~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 -IK---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred -CC---HHHHHHHHHHcCCCHHHHH
Confidence 11 2346678899999886554
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.3e-05 Score=58.25 Aligned_cols=40 Identities=33% Similarity=0.435 Sum_probs=30.9
Q ss_pred CCCceeeccCccccccCcccccccccceeeccCcccccccc
Q 042296 594 RYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLC 634 (1446)
Q Consensus 594 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp 634 (1446)
++|++|++++|+|+.+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4788999999999999888899999999999987 355543
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.72 E-value=0.0027 Score=78.63 Aligned_cols=180 Identities=22% Similarity=0.260 Sum_probs=104.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC---CceEEEEeCCC---CCHHHHHHHH---------------HHHhcCCC-
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF---DLKAWTCVSED---FDITRITKSI---------------LNSIGTDQ- 244 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~~~~~i---------------~~~l~~~~- 244 (1446)
.+.|+|.+|+||||+|+.+++.......+ ....|+.+... .+...+...+ +...+...
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~ 256 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEP 256 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCch
Confidence 46799999999999999998754333332 23456655421 1222221111 11111110
Q ss_pred ----------------CCCCCCHHHHHHHHHHHcCCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEE--EccChH
Q 042296 245 ----------------NVDSLDFDKLQVELKKQLSQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV--TTRNQA 306 (1446)
Q Consensus 245 ----------------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~ 306 (1446)
+.+..+ ...+..+.+.++++++.++-|+.|..+...|+.+...+....+...|+| ||++..
T Consensus 257 ~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~ 335 (615)
T TIGR02903 257 KTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE 335 (615)
T ss_pred hcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc
Confidence 001112 2357788888999999999888887766778888777766655555665 666543
Q ss_pred H-HHhh-CCCCceecCCCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhh
Q 042296 307 V-VAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGL 371 (1446)
Q Consensus 307 v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 371 (1446)
. ...+ .....+.+.+++.+|.++++.+.+-... .... +++...|++....-+-|+..++..
T Consensus 336 ~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 336 EINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 2 1111 1224578899999999999998763221 1111 234444555554445566555443
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0004 Score=82.69 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=66.4
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEE-EEccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIV-VTTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|+++.-....|..+...+......+.+| +||+...+...+ .....+++.+++.++..+.+.+.+...+.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4567789999998876677888777666544566655 455555555443 23357899999999999999888743331
Q ss_pred CCCChhHHHHHHHHHHHhCCchh
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPL 363 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPl 363 (1446)
... .+....|++.++|.+-
T Consensus 206 ~ie----~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 206 KTD----IEALRIIAYKSEGSAR 224 (507)
T ss_pred CCC----HHHHHHHHHHcCCCHH
Confidence 111 3445668888988763
No 71
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.67 E-value=0.00034 Score=75.75 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=87.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
..|+|+.|+|||+||+.+++. ....-..+.++.+..... ...+..+.+. . --
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~~----~-~d 99 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---------------------FVPEVLEGME----Q-LS 99 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---------------------hhHHHHHHhh----h-CC
Confidence 469999999999999999973 333333456666532100 0011111111 1 23
Q ss_pred EEEEECCCCCC-hhhHHHhc-ccccCC-CCC-cEEEEEccCh---------HHHHhhCCCCceecCCCChHhHHHHHHhh
Q 042296 268 LLVLDDVWNEN-YNDWIDLS-RPFEAG-APG-SKIVVTTRNQ---------AVVAIMGTVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 268 LlVlDdv~~~~-~~~~~~~~-~~l~~~-~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
+|++||+.... ...|+... ..+... ..| .++|+||+.. +....+.....++++++++++-.+.+.++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 78999995432 13443321 222111 123 4799999743 44455666678999999999999998876
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 335 SLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
+...+ ...+ +++..-|++.+.|..-++..+
T Consensus 180 a~~~~-~~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 180 ARLRG-FELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHcC-CCCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 64322 2222 456677888888765544433
No 72
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.67 E-value=5.5e-05 Score=84.94 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=59.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCCH-HH----HHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED--FDITRITKSILNSIGTDQNVDSLDF-DK----LQVELKK 260 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~-~~----~~~~l~~ 260 (1446)
+.|+|.+|+|||||++.+++... .++|+..+||.+.+. .++.++++.+...+-......+... .. ..+..+.
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~ 249 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKR 249 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHH
Confidence 47899999999999999998543 337999999999866 7899999999654433322111111 11 1111112
Q ss_pred H-cCCceEEEEEECCC
Q 042296 261 Q-LSQKKFLLVLDDVW 275 (1446)
Q Consensus 261 ~-l~~~~~LlVlDdv~ 275 (1446)
. -.+++++|++|.+.
T Consensus 250 ~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 250 LVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHcCCCeEEEEEChh
Confidence 2 26899999999993
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=1.3e-05 Score=95.56 Aligned_cols=102 Identities=25% Similarity=0.337 Sum_probs=80.6
Q ss_pred HhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccce
Q 042296 565 QRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLH 644 (1446)
Q Consensus 565 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 644 (1446)
..+..++.|.+|++.+|.|..+...+..+.+|++|+|++|.|+.+ ..+..+..|+.|++++| .+..++ .+..+++|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDIS-GLESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhcc-CCccchhhh
Confidence 335578899999999999998876588899999999999999988 44788888999999998 466664 467789999
Q ss_pred eecccCCCcccccCCc-cccccccccc
Q 042296 645 HLNNSTTNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 645 ~L~l~~~~~~~~~p~~-i~~L~~L~~L 670 (1446)
.+++++|. +..+... ...+.+++.+
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHH
Confidence 99999987 6655543 4566666665
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=9.3e-05 Score=88.56 Aligned_cols=177 Identities=15% Similarity=0.131 Sum_probs=95.9
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH-cCCceE
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ-LSQKKF 267 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~ 267 (1446)
-++|++|+||||+|+.+++.....+.+...+|.|.+... +..-...-+..+.........+..++...+... ..+++-
T Consensus 40 Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~k 118 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRK 118 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCe
Confidence 588999999999999998753322223333343322100 000000000000111010111122222222211 235667
Q ss_pred EEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCCCCCh
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDFNMHK 345 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~ 345 (1446)
++|+|+++......+..+...+......+.+|++|.. ..+...+ .....+++.+++.++..+.+.+.+...+...
T Consensus 119 VVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--- 195 (504)
T PRK14963 119 VYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--- 195 (504)
T ss_pred EEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC---
Confidence 8999999877666677777776654455565555543 3333322 2235799999999999999988764333111
Q ss_pred hHHHHHHHHHHHhCCchh-HHHHHHh
Q 042296 346 SLEEIGKKIVIKCNGLPL-AAKTLGG 370 (1446)
Q Consensus 346 ~~~~~~~~i~~~c~glPl-ai~~~~~ 370 (1446)
-.+.+..|++.++|.+- |+..+-.
T Consensus 196 -~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 196 -EPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred -CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 13566779999999874 4443333
No 75
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00092 Score=77.75 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=63.5
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++.......+..+...+.......++|++|.+. .+.... +....+++.+++.++..+.+...+...+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~- 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI- 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 455699999997766556766666665544566777766543 333332 22357999999999998888776533221
Q ss_pred CCChhHHHHHHHHHHHhCCchhH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPla 364 (1446)
... ++.+..|++.++|.|-.
T Consensus 197 ~i~---~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 197 DTD---EYALKLIAYHAHGSMRD 216 (363)
T ss_pred CCC---HHHHHHHHHHcCCCHHH
Confidence 111 34566788899998753
No 76
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.63 E-value=0.00089 Score=70.15 Aligned_cols=90 Identities=18% Similarity=0.301 Sum_probs=62.0
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+||+.......++.+...+....+.+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 566789999997665556666766665545567777777653 222222 22357999999999998888776 1 1
Q ss_pred CCChhHHHHHHHHHHHhCCchh
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPL 363 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPl 363 (1446)
. .+.+..|++.++|.|.
T Consensus 170 -~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -S----EEAAELLLALAGGSPG 186 (188)
T ss_pred -C----HHHHHHHHHHcCCCcc
Confidence 1 3567889999999885
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=5.9e-06 Score=85.56 Aligned_cols=149 Identities=17% Similarity=0.097 Sum_probs=70.6
Q ss_pred eeeccCCCchhhhhhhcCCCCccEEEeccccCccccCc--cCCCCCcccEEEEeccCCCcccCCCCCC--cccccceecc
Q 042296 1189 ICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPG--GLHKLRHLQEVGIWSCGNLVSFPEGGLP--SANLTKLQIT 1264 (1446)
Q Consensus 1189 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~c~~l~~lp~~~~~--~~~L~~L~l~ 1264 (1446)
|.+.++..-..+...+..-.+|+.|+++.|+..+.... -+.+++.|.+|+|+-|...+..-..... ..+|+.|+++
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence 33344444344444445555555555555554443211 1345555555555555433221100000 1356666666
Q ss_pred cccC------cccccccCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcceee
Q 042296 1265 WCDK------LEALPEGMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLS 1338 (1446)
Q Consensus 1265 ~c~~------l~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~ 1338 (1446)
+|.. +..+...+++|.+|++++|..+..- ....+.-.+-|++|.++.|..+.. ...-.+...++|.+|+
T Consensus 295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~--~~~~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND--CFQEFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPSLVYLD 369 (419)
T ss_pred hhHhhhhhhHHHHHHHhCCceeeeccccccccCch--HHHHHHhcchheeeehhhhcCCCh---HHeeeeccCcceEEEE
Confidence 6532 2233445667777777776665541 111122234566666666654321 1111255566777777
Q ss_pred ecCc
Q 042296 1339 IGGL 1342 (1446)
Q Consensus 1339 l~~~ 1342 (1446)
+-+|
T Consensus 370 v~g~ 373 (419)
T KOG2120|consen 370 VFGC 373 (419)
T ss_pred eccc
Confidence 7664
No 78
>PRK05642 DNA replication initiation factor; Validated
Probab=97.56 E-value=0.00053 Score=74.13 Aligned_cols=150 Identities=20% Similarity=0.300 Sum_probs=88.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.|+|..|+|||.||+.+++. ....-..++|++..+ +... .. .+.+.+++-.
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~~d- 99 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQYE- 99 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhhCC-
Confidence 469999999999999999873 332224566766532 1110 01 1222232222
Q ss_pred EEEEECCCCCC-hhhHHH-hcccccC-CCCCcEEEEEccChH---------HHHhhCCCCceecCCCChHhHHHHHHhhc
Q 042296 268 LLVLDDVWNEN-YNDWID-LSRPFEA-GAPGSKIVVTTRNQA---------VVAIMGTVPAYPLKELSDEDCLNVFTQHS 335 (1446)
Q Consensus 268 LlVlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 335 (1446)
++|+||+.... ...|.+ +...+.. ...|..||+|++... +...+.....+++++++.++-.+.+.+++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 67889995321 134433 3332221 124678999887432 22233444678999999999999998766
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHH
Q 042296 336 LGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLG 369 (1446)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 369 (1446)
...+ ...+ +++..-|++.+.|..-++..+-
T Consensus 180 ~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 180 SRRG-LHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 4322 2222 4667778888888765544333
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.55 E-value=0.00028 Score=71.06 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=57.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+.|+|.+|+||||+|+.+++.. ...-..++++...+..........+... ............++
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 85 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGHF-------------LVRLLFELAEKAKP 85 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--hcCCCCeEEEehhhhhhhhHHHHHhhhh-------------hHhHHHHhhccCCC
Confidence 45799999999999999999843 2222446666655433322211111000 01111122234567
Q ss_pred EEEEEECCCCCC---hhhHHHhcccccCC---CCCcEEEEEccCh
Q 042296 267 FLLVLDDVWNEN---YNDWIDLSRPFEAG---APGSKIVVTTRNQ 305 (1446)
Q Consensus 267 ~LlVlDdv~~~~---~~~~~~~~~~l~~~---~~gs~iivTtR~~ 305 (1446)
.+||+||++... ...+......+... ..+.+||+||...
T Consensus 86 ~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 86 GVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred eEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 899999998531 12233323333221 3678899888765
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=2e-05 Score=72.03 Aligned_cols=96 Identities=22% Similarity=0.187 Sum_probs=81.0
Q ss_pred HHHhhhcCceeEEEEeCCCCccccCccccCC-CCCceeeccCccccccCcccccccccceeeccCccccccccccccCcc
Q 042296 563 ILQRLLKLHRLKVFSLCGYQISELPNSVGDL-RYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLI 641 (1446)
Q Consensus 563 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L-~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 641 (1446)
.+..+.+...|...+|++|.+..+|..|... +.+..|+|++|.|..+|..+..++.|+.|+++.| .+...|.-|..|.
T Consensus 45 avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLI 123 (177)
T ss_pred HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHH
Confidence 3445557788999999999999998887654 4899999999999999999999999999999997 5788888888899
Q ss_pred cceeecccCCCcccccCCc
Q 042296 642 KLHHLNNSTTNSLEEMPRG 660 (1446)
Q Consensus 642 ~L~~L~l~~~~~~~~~p~~ 660 (1446)
+|-.|+..+|. ...+|..
T Consensus 124 ~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred hHHHhcCCCCc-cccCcHH
Confidence 99999988887 6667654
No 81
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.49 E-value=0.00092 Score=71.30 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=90.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFD--LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
+-|+|..|+|||.|.+++++. +.+... .+++++ ..++...+...+... .. ..++..++ .
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~------~~----~~~~~~~~-~ 97 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDG------EI----EEFKDRLR-S 97 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTT------SH----HHHHHHHC-T
T ss_pred eEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHcc------cc----hhhhhhhh-c
Confidence 469999999999999999983 433332 344544 345666666665432 12 23334444 3
Q ss_pred eEEEEEECCCCCCh-hhHHH----hcccccCCCCCcEEEEEccC---------hHHHHhhCCCCceecCCCChHhHHHHH
Q 042296 266 KFLLVLDDVWNENY-NDWID----LSRPFEAGAPGSKIVVTTRN---------QAVVAIMGTVPAYPLKELSDEDCLNVF 331 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~-~~~~~----~~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 331 (1446)
-=+|++||+..-.. ..|.+ +...+. ..|.+||+|++. ++....+...-.+++++.+.++-.+++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 45788999965422 22322 222222 247789999963 234444556667999999999999999
Q ss_pred HhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 042296 332 TQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKT 367 (1446)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 367 (1446)
.+.|...+- ..+ ++++.-|++.+.+..-.+..
T Consensus 176 ~~~a~~~~~-~l~---~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 176 QKKAKERGI-ELP---EEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHTT---S----HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHhCC-CCc---HHHHHHHHHhhcCCHHHHHH
Confidence 988843321 222 45666677777665544433
No 82
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.48 E-value=0.00083 Score=72.05 Aligned_cols=124 Identities=20% Similarity=0.305 Sum_probs=81.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
..+||++|+||||||+.+.....-.. ..||..|....-.+-.++|+++... ...+.++|.
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~----------------~~~l~krkT 224 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN----------------EKSLTKRKT 224 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH----------------HHhhhccee
Confidence 46899999999999999997433222 5678877665444555555554321 112457899
Q ss_pred EEEEECCCCCChhhHHHhcccccCCCCCcEEEE--EccChHHH---HhhCCCCceecCCCChHhHHHHHHhh
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV--TTRNQAVV---AIMGTVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
.|.+|.|..-+..+-+. .+|.-..|.-++| ||.++... ..+....++.++.|..++...++.+.
T Consensus 225 ilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 225 ILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred EEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 99999996544333333 3444446776665 78776532 22344578999999999998888773
No 83
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.45 E-value=0.0014 Score=84.11 Aligned_cols=210 Identities=14% Similarity=0.146 Sum_probs=119.4
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCC----CCcEEE--EEccCh--HHHHhhCCCCceecCCCChHhHHHHHHhh
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGA----PGSKIV--VTTRNQ--AVVAIMGTVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~----~gs~ii--vTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
+.++.++|+||+.-.+....+-+........ .-..|. .|.+.. .+-........+.|.+|+..+.-.+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 4569999999984333222222111111110 011233 233322 11222233467999999999999998876
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCC------ChhHHHHHHhccccCCCCcccccchhhhhhhc
Q 042296 335 SLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKT------DQRDWEDVLNCKIWDLPEERCDILPALKVSYY 408 (1446)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~------~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~ 408 (1446)
..... ....+....|+++..|.|+-+.-+-..+.... +...|+.-.. ........ +.+...+..-.+
T Consensus 232 l~~~~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~-~i~~~~~~-~~vv~~l~~rl~ 304 (849)
T COG3899 232 LGCTK-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA-SLGILATT-DAVVEFLAARLQ 304 (849)
T ss_pred hCCcc-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH-hcCCchhh-HHHHHHHHHHHh
Confidence 53211 22356778899999999999998888887742 2333432211 11111111 124445777889
Q ss_pred cCCHHHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCccccc-----cCCCCc--e
Q 042296 409 YLSPRLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKS-----SNDTLR--F 481 (1446)
Q Consensus 409 ~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~-----~~~~~~--~ 481 (1446)
.||...++.+..-|++... |+.+.|-..|- .....++....+.|....++-.. ...... |
T Consensus 305 kL~~~t~~Vl~~AA~iG~~--F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y 371 (849)
T COG3899 305 KLPGTTREVLKAAACIGNR--FDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATY 371 (849)
T ss_pred cCCHHHHHHHHHHHHhCcc--CCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhH
Confidence 9999999999999998654 45666666551 23455666666666655555321 111111 2
Q ss_pred -EehhhHHHHHH
Q 042296 482 -VMHDLVNDLAQ 492 (1446)
Q Consensus 482 -~mH~lv~~~~~ 492 (1446)
-.||.|++.|-
T Consensus 372 ~F~H~~vqqaaY 383 (849)
T COG3899 372 KFLHDRVQQAAY 383 (849)
T ss_pred HhhHHHHHHHHh
Confidence 35777777664
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.45 E-value=1.8e-05 Score=94.46 Aligned_cols=98 Identities=29% Similarity=0.375 Sum_probs=78.3
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
.+..+..+++..|.|..+-+.++.+.+|.+|++.+|+|+.+...+..+.+|++|++++| .+..+ ..+..|+.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhee
Confidence 34555666688888887656688999999999999999999766899999999999998 57777 34788888999999
Q ss_pred cCCCcccccCCccccccccccc
Q 042296 649 STTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
.+|. +..++ ++..++.|+.+
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccCc-chhcc-CCccchhhhcc
Confidence 9998 66553 45556666666
No 85
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0011 Score=79.36 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=65.1
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEE-EEEccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKI-VVTTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i-ivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.++.-++|+|++...+...+..+...+..-..++++ ++||....+...+ +-...+.++.++.++..+.+.+.+...+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 456679999999887766777776666543345554 4555545554333 22367999999999999988876532221
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAAK 366 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai~ 366 (1446)
... .+....|++.++|.|....
T Consensus 202 -~~d---~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 202 -AHE---VNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred -CCC---HHHHHHHHHHcCCCHHHHH
Confidence 111 3445778999999885443
No 86
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0012 Score=81.61 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=66.9
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEcc-ChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTR-NQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|++.......+..+...+-.-....++|++|. ...+...+ .....|.+++++.++..+.+.+.+-..+
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg- 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ- 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 46777999999987766677776666654444566665554 44444332 2336799999999999988887653221
Q ss_pred CCCChhHHHHHHHHHHHhCCchh-HHHHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPL-AAKTL 368 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 368 (1446)
... -.+.+..|++.++|.|- |+.++
T Consensus 196 I~~---edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 196 LPF---EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 111 14566779999999884 44443
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0015 Score=78.51 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=65.3
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEE-EEccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIV-VTTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|++...+...+..+...+......+.+| +||....+...+ .....+++++++.++..+.+.+.+...+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg- 195 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN- 195 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-
Confidence 3566799999997766566667766665544456555 555544444332 3346799999999998877776543222
Q ss_pred CCCChhHHHHHHHHHHHhCCch-hHHHHHHh
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLP-LAAKTLGG 370 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 370 (1446)
... -++....|++.++|.+ -|+..+-.
T Consensus 196 i~~---e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 196 INS---DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 111 1345567888898865 45555543
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0012 Score=80.11 Aligned_cols=102 Identities=11% Similarity=0.125 Sum_probs=67.1
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
++.-++|||++...+...|..+...+..-....++|+||.+.. +...+ +-...+.++.++.++..+.+.+.+...+.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI- 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI- 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 4555888999987766667777666655445778777777643 32222 22357999999999999999877633221
Q ss_pred CCChhHHHHHHHHHHHhCCch-hHHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLP-LAAKTLG 369 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glP-lai~~~~ 369 (1446)
.. -.+....|++.++|.. -|+.++-
T Consensus 197 ~i---d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 197 AF---EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 1455677889998865 4555433
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.39 E-value=0.0011 Score=72.09 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=83.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.|+|..|+|||+||+.+++... ... ....+++..+.. .. + ... ...-
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~-------------------~~~-~~~~ 92 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F-------------------DFD-PEAE 92 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H-------------------hhc-ccCC
Confidence 46999999999999999997421 222 233444443211 00 0 011 2234
Q ss_pred EEEEECCCCCChhhHHHhcccccCC-CCCc-EEEEEccChHHHH--------hhCCCCceecCCCChHhHHHHHHhhccC
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAG-APGS-KIVVTTRNQAVVA--------IMGTVPAYPLKELSDEDCLNVFTQHSLG 337 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~-~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 337 (1446)
+||+||+.......-..+...+... ..|. .||+|++...... .+.....+++.++++++-..++.+.+-.
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 7889999643222222333333211 1343 4667766432221 2333467899999998877777654322
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhh
Q 042296 338 TRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLL 372 (1446)
Q Consensus 338 ~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L 372 (1446)
.+ ...+ ++....+++...|.+..+..+-..+
T Consensus 173 ~~-v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 173 RG-LQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cC-CCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11 1222 4566778888999988876666554
No 90
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.0023 Score=76.06 Aligned_cols=164 Identities=13% Similarity=0.156 Sum_probs=98.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF--DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
..-|+|..|+|||+|++++++. +.... ..+++++ ..++...+...++... ......++.++
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~--------~~~~~~~~~~~- 205 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH--------KEIEQFKNEIC- 205 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh--------hHHHHHHHHhc-
Confidence 3569999999999999999883 33222 2233433 3456677766664311 11233444444
Q ss_pred ceEEEEEECCCCCCh-hhH-HHhcccccC-CCCCcEEEEEccCh---------HHHHhhCCCCceecCCCChHhHHHHHH
Q 042296 265 KKFLLVLDDVWNENY-NDW-IDLSRPFEA-GAPGSKIVVTTRNQ---------AVVAIMGTVPAYPLKELSDEDCLNVFT 332 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 332 (1446)
+.-+||+||+..... ..| +.+...+.. ...|..||+|+... .+...+..+-.+.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 344788999954321 112 223222221 12355788887632 233344555678899999999999999
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHH
Q 042296 333 QHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLG 369 (1446)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 369 (1446)
+++-..+- . ..--+++..-|++.++|.|-.+.-+.
T Consensus 286 ~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 286 KEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 88743221 0 01125677889999999987665544
No 91
>PLN03025 replication factor C subunit; Provisional
Probab=97.38 E-value=0.0012 Score=75.63 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=84.5
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFD-LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
-++|.+|+||||+|+.+++.. ....|. .++-+..++..+.. ..+++++....... . .-.++.-
T Consensus 38 ll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~-~-------------~~~~~~k 101 (319)
T PLN03025 38 ILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKMFAQKKV-T-------------LPPGRHK 101 (319)
T ss_pred EEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHHHHhccc-c-------------CCCCCeE
Confidence 589999999999999998732 122232 11112222222221 11222211110000 0 0024566
Q ss_pred EEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCCCCCh
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDFNMHK 345 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~ 345 (1446)
++|+|+++.-.......+...+......+++|+++... .+.... .....+++++++.++..+.+...+-..+. ...
T Consensus 102 viiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi-~i~- 179 (319)
T PLN03025 102 IVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV-PYV- 179 (319)
T ss_pred EEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC-CCC-
Confidence 99999997765544445544444334567777766442 222211 12256899999999999888877643321 111
Q ss_pred hHHHHHHHHHHHhCCch
Q 042296 346 SLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 346 ~~~~~~~~i~~~c~glP 362 (1446)
.+....|++.++|..
T Consensus 180 --~~~l~~i~~~~~gDl 194 (319)
T PLN03025 180 --PEGLEAIIFTADGDM 194 (319)
T ss_pred --HHHHHHHHHHcCCCH
Confidence 345677888888865
No 92
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.36 E-value=9.9e-06 Score=86.46 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=62.1
Q ss_pred hhhcCceeEEEEeCCCCcc-----ccCccccCCCCCceeeccCcc----ccccCcc-------cccccccceeeccCccc
Q 042296 566 RLLKLHRLKVFSLCGYQIS-----ELPNSVGDLRYLRYLNLSRTC----IEILPDS-------INKLYNLHTLLLEDCDR 629 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~----i~~lp~~-------i~~L~~L~~L~L~~~~~ 629 (1446)
-+-.+..+..++|++|.+. .+-..+.+.++||.-++++-. ..++|+. +-..++|++||||.|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3347889999999999875 244556777899999998742 2255654 33456899999999854
Q ss_pred ccccccc----ccCcccceeecccCCC
Q 042296 630 LKKLCAD----MGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 630 ~~~lp~~----i~~L~~L~~L~l~~~~ 652 (1446)
-..-+.. +.+.+.|+||.|.+|.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC
Confidence 3333333 4567889999999887
No 93
>PRK04195 replication factor C large subunit; Provisional
Probab=97.35 E-value=0.0054 Score=74.52 Aligned_cols=220 Identities=15% Similarity=0.138 Sum_probs=115.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-|+|++|+||||+|+.++++. . |+ .+-+++++..+. .....++........ ....++
T Consensus 41 ~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~~-~~i~~~i~~~~~~~s---------------l~~~~~ 99 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRTA-DVIERVAGEAATSGS---------------LFGARR 99 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEcccccccH-HHHHHHHHHhhccCc---------------ccCCCC
Confidence 34689999999999999999842 1 22 233344433222 222333322211110 011367
Q ss_pred EEEEEECCCCCCh----hhHHHhcccccCCCCCcEEEEEccChH-HHH-hh-CCCCceecCCCChHhHHHHHHhhccCCC
Q 042296 267 FLLVLDDVWNENY----NDWIDLSRPFEAGAPGSKIVVTTRNQA-VVA-IM-GTVPAYPLKELSDEDCLNVFTQHSLGTR 339 (1446)
Q Consensus 267 ~LlVlDdv~~~~~----~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~-~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 339 (1446)
-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... .. .....+.+.+++.++....+.+.+...+
T Consensus 100 kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~eg 177 (482)
T PRK04195 100 KLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEG 177 (482)
T ss_pred eEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 8999999976422 224444444432 3445666664421 111 11 2235688999999999888887764333
Q ss_pred CCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCC-C--ChhHHHHHHhccccCCCCcccccchhhhhhhc-cCCHHHH
Q 042296 340 DFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK-T--DQRDWEDVLNCKIWDLPEERCDILPALKVSYY-YLSPRLK 415 (1446)
Q Consensus 340 ~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~-~--~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~-~L~~~~k 415 (1446)
. ..+ .+....|++.++|-.-++......+... . +.+....+.. .+....++.++..-+. .-+....
T Consensus 178 i-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------~d~~~~if~~l~~i~~~k~~~~a~ 247 (482)
T PRK04195 178 I-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------RDREESIFDALDAVFKARNADQAL 247 (482)
T ss_pred C-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------CCCCCCHHHHHHHHHCCCCHHHHH
Confidence 2 222 3567779999998765544333333322 1 1222222221 1222455666654443 2233333
Q ss_pred HHHhhhccCCCCceeChHHHHHHHHhCCCCCC
Q 042296 416 QCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQ 447 (1446)
Q Consensus 416 ~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~ 447 (1446)
..+..+. ++. ..+-.|+.+.+...
T Consensus 248 ~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 248 EASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred HHHHccc-------CCH-HHHHHHHHhccccc
Confidence 3222211 222 45778999998753
No 94
>CHL00181 cbbX CbbX; Provisional
Probab=97.35 E-value=0.0097 Score=66.27 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=71.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|.+|+||||+|+.+++.......-...-|+.++.. ++.....+.. .......+.+. .+ -
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~--------~l~~~~~g~~------~~~~~~~l~~a-~g--g 124 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD--------DLVGQYIGHT------APKTKEVLKKA-MG--G 124 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH--------HHHHHHhccc------hHHHHHHHHHc-cC--C
Confidence 468899999999999999863211111122235555521 2222221111 11122223322 22 4
Q ss_pred EEEEECCCCC---------ChhhHHHhcccccCCCCCcEEEEEccChHHHHhh--------CCCCceecCCCChHhHHHH
Q 042296 268 LLVLDDVWNE---------NYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM--------GTVPAYPLKELSDEDCLNV 330 (1446)
Q Consensus 268 LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l 330 (1446)
+|++|++..- .......+...+.....+.+||.++....+.... .....+.+++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 8999998531 1112233344444444566777777544332211 1124688999999999998
Q ss_pred HHhhcc
Q 042296 331 FTQHSL 336 (1446)
Q Consensus 331 f~~~a~ 336 (1446)
+...+-
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 887764
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.35 E-value=0.0011 Score=82.85 Aligned_cols=144 Identities=28% Similarity=0.340 Sum_probs=79.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc--CCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL--SQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~ 265 (1446)
+-++|++|+||||+|+.+++. ...+|. .++..... ..+..+......+.+ .++
T Consensus 55 lLL~GPpGtGKTTLA~aIA~~--~~~~f~-----~lna~~~~------------------i~dir~~i~~a~~~l~~~~~ 109 (725)
T PRK13341 55 LILYGPPGVGKTTLARIIANH--TRAHFS-----SLNAVLAG------------------VKDLRAEVDRAKERLERHGK 109 (725)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hcCcce-----eehhhhhh------------------hHHHHHHHHHHHHHhhhcCC
Confidence 368999999999999999973 344441 11110000 001111122222222 246
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEE--EccChH--HHHhh-CCCCceecCCCChHhHHHHHHhhccC---
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV--TTRNQA--VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLG--- 337 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~--v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~--- 337 (1446)
+.+||+||++.-+...++.+...+. .|+.++| ||+++. +.... .....+.+++++.++...++.+.+-.
T Consensus 110 ~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~ 186 (725)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKER 186 (725)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHh
Confidence 7899999997765555666554333 3555555 344432 22221 22357999999999999998876531
Q ss_pred ---CCCCCCChhHHHHHHHHHHHhCCch
Q 042296 338 ---TRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 338 ---~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
......+ ++....|++.+.|..
T Consensus 187 ~~g~~~v~I~---deaL~~La~~s~GD~ 211 (725)
T PRK13341 187 GYGDRKVDLE---PEAEKHLVDVANGDA 211 (725)
T ss_pred hcCCcccCCC---HHHHHHHHHhCCCCH
Confidence 1111111 344566777777653
No 96
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0021 Score=77.07 Aligned_cols=99 Identities=11% Similarity=0.084 Sum_probs=63.9
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHh-hCCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|+|..-+...+..+...+.....+.++|++|.+. .+... ......+++++++.++..+.+.+.+...+.
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI 195 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI 195 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC
Confidence 3566789999997766556666666555444566777776653 23222 233467999999999999888876643321
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
.. -.+....|++.++|.+-.+
T Consensus 196 ~i----d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 196 AA----DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CC----CHHHHHHHHHHcCCCHHHH
Confidence 11 1345667888898876433
No 97
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.00033 Score=81.39 Aligned_cols=97 Identities=12% Similarity=0.022 Sum_probs=63.4
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEE-EEccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIV-VTTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.++.-++|+|++..-+...+..+...+........+| .||....+...+ .....|.+.+++.++..+.+.+.+...+.
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 4566799999998777677777766664433344544 455544444333 23357999999999988888876643221
Q ss_pred CCCChhHHHHHHHHHHHhCCchh
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPL 363 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPl 363 (1446)
.. -.+....|++.++|.+-
T Consensus 199 -~~---e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 199 -QY---DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred -CC---CHHHHHHHHHHcCChHH
Confidence 11 14456779999999873
No 98
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0024 Score=76.01 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=62.9
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++..-.......+...+........+|++|.+ ..+.... .....+.+.+++.++....+.+.+...+.
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi- 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI- 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-
Confidence 46679999999654434455555555443334444444433 3443333 23357899999999988888877643221
Q ss_pred CCChhHHHHHHHHHHHhCC-chhHHHHHHhhh
Q 042296 342 NMHKSLEEIGKKIVIKCNG-LPLAAKTLGGLL 372 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~g-lPlai~~~~~~L 372 (1446)
... ++....|++.++| ++.|+..+-.+.
T Consensus 195 ~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 195 EID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 111 3456668887765 467777665543
No 99
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.29 E-value=0.002 Score=66.23 Aligned_cols=153 Identities=24% Similarity=0.249 Sum_probs=77.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-.||++|+||||||.-+++ +....|. +.+.. ..+-..-+..++..+. ++
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~i~k~~dl~~il~~l~-----------------------~~ 102 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-AIEKAGDLAAILTNLK-----------------------EG 102 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C--SCHHHHHHHHT-------------------------TT
T ss_pred eEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-hhhhHHHHHHHHHhcC-----------------------CC
Confidence 346899999999999999998 3444442 22221 1111111122222221 23
Q ss_pred EEEEEECCCCCChhhHHHhcccccCC--------C-----------CCcEEEEEccChHHHHhhCCC-C-ceecCCCChH
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAG--------A-----------PGSKIVVTTRNQAVVAIMGTV-P-AYPLKELSDE 325 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~--------~-----------~gs~iivTtR~~~v~~~~~~~-~-~~~l~~L~~~ 325 (1446)
-+|.+|.+..-+...-+.+..++-++ + +-+-|=.|||...+...+... . ..+++..+.+
T Consensus 103 ~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~ 182 (233)
T PF05496_consen 103 DILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEE 182 (233)
T ss_dssp -EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THH
T ss_pred cEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHH
Confidence 35555666443332222222222211 1 123445688876544443322 2 3479999999
Q ss_pred hHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhh
Q 042296 326 DCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLL 372 (1446)
Q Consensus 326 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L 372 (1446)
|-.++..+.|..-.. +--++.+.+|++.+.|-|--..-+-...
T Consensus 183 el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 183 ELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp HHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 999999887743321 1225678899999999996544444333
No 100
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.28 E-value=0.0021 Score=75.01 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=59.1
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+.+-+||+||+..-.......+...+......+++|+||.... +...+ .....+.+.+++.++..+.+.+.+...+.
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~- 202 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV- 202 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 3455899999965543334444444433344577888775432 22222 22346888999999998888876643221
Q ss_pred CCChhHHHHHHHHHHHhCCchhHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
... .+.+..+++.++|.+-.+
T Consensus 203 ~~~---~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 203 DYD---DDGLELIAYYAGGDLRKA 223 (337)
T ss_pred CCC---HHHHHHHHHHcCCCHHHH
Confidence 111 456677888888876444
No 101
>PRK06620 hypothetical protein; Validated
Probab=97.27 E-value=0.0021 Score=68.09 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=75.8
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
.-|||.+|+|||+||+.+++... . .++. ..+. . + +.. +..-
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~---------------------~-~-------~~~-~~~d 87 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF---------------------N-E-------EIL-EKYN 87 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh---------------------c-h-------hHH-hcCC
Confidence 46999999999999999887431 1 1111 0000 0 0 001 1234
Q ss_pred EEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-------HHHHhhCCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-------AVVAIMGTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
++++||+..-+......+...+. ..|..||+|++.+ +....+...-.+++++++.++-..++.+.+... .
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~ 164 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-S 164 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-C
Confidence 78899995321111222222222 2467899999743 233444555689999999999888887766321 1
Q ss_pred CCCChhHHHHHHHHHHHhCCchhH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPla 364 (1446)
...+ +++..-|++.+.|.--+
T Consensus 165 l~l~---~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 165 VTIS---RQIIDFLLVNLPREYSK 185 (214)
T ss_pred CCCC---HHHHHHHHHHccCCHHH
Confidence 1222 45666677777765433
No 102
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.24 E-value=0.0081 Score=67.01 Aligned_cols=131 Identities=13% Similarity=0.073 Sum_probs=70.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|.+|+||||+|+.++............-|+.++. . +++..+.+.. .......+.+. ..-
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~------~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT------APKTKEILKRA---MGG 123 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc------hHHHHHHHHHc---cCc
Confidence 46889999999999987775221111112223555552 1 2222222111 12222223322 235
Q ss_pred EEEEECCCCC---------ChhhHHHhcccccCCCCCcEEEEEccChHHHHhhC--------CCCceecCCCChHhHHHH
Q 042296 268 LLVLDDVWNE---------NYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMG--------TVPAYPLKELSDEDCLNV 330 (1446)
Q Consensus 268 LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 330 (1446)
+|++|++..- ....+..+...+.....+.+||+++.......... ....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899998521 11223344444544445667777765432222111 124588999999999999
Q ss_pred HHhhc
Q 042296 331 FTQHS 335 (1446)
Q Consensus 331 f~~~a 335 (1446)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88776
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.0027 Score=75.49 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=89.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC-C-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF-D-LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
..-|||..|+|||+||+++++. +.... . .++|++. .++..++...+... ..++ .++.+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~~~ 193 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKYRK 193 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHHHh
Confidence 3579999999999999999984 33333 2 3556554 34566666555322 1222 2333333
Q ss_pred ceEEEEEECCCCCC-----hhhHHHhcccccCCCCCcEEEEEcc-ChHHH--------HhhCCCCceecCCCChHhHHHH
Q 042296 265 KKFLLVLDDVWNEN-----YNDWIDLSRPFEAGAPGSKIVVTTR-NQAVV--------AIMGTVPAYPLKELSDEDCLNV 330 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~-----~~~~~~~~~~l~~~~~gs~iivTtR-~~~v~--------~~~~~~~~~~l~~L~~~~~~~l 330 (1446)
+.-+|++||+.... ..++..+...+.. .|..||+||. .+.-. ..+.....+.+++.+.+.-.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 45689999996421 0112222222222 3457888884 33221 1233445788999999999999
Q ss_pred HHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 331 FTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 331 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
+.+.+.... ...+ +++..-|++.+.|.-
T Consensus 272 L~~~~~~~~-~~l~---~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 272 ARKMLEIEH-GELP---EEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHHhcC-CCCC---HHHHHHHHhccccCH
Confidence 988874322 2222 456677777777653
No 104
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.01 Score=68.06 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=107.3
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCC-c-eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC--
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFD-L-KAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS-- 263 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-- 263 (1446)
+-|+|..|.|||+.++.|.. +++.... . +++|.+-......+++..|+.+++.... ......+....+.+.+.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~-~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPL-TGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred EEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCC-CCCchHHHHHHHHHHHHhc
Confidence 56999999999999999998 4443331 1 6889999999999999999999973332 34555666677777764
Q ss_pred CceEEEEEECCCCCChh---hHHHhcccccCCCCCcEEE--EEccChHHHHhhCC-------CCceecCCCChHhHHHHH
Q 042296 264 QKKFLLVLDDVWNENYN---DWIDLSRPFEAGAPGSKIV--VTTRNQAVVAIMGT-------VPAYPLKELSDEDCLNVF 331 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~---~~~~~~~~l~~~~~gs~ii--vTtR~~~v~~~~~~-------~~~~~l~~L~~~~~~~lf 331 (1446)
++.++||||+++.-... ..-.+....... .++|+ ..+-+..+...+.+ ...+..++-+.+|-.+.+
T Consensus 122 ~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il 199 (366)
T COG1474 122 GKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDIL 199 (366)
T ss_pred CCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHH
Confidence 68999999999543211 122222222111 44443 34444333333221 123678888999999998
Q ss_pred HhhccCC-CCCCCChhHHHHHHHHHHHhC-CchhHHHHHH
Q 042296 332 TQHSLGT-RDFNMHKSLEEIGKKIVIKCN-GLPLAAKTLG 369 (1446)
Q Consensus 332 ~~~a~~~-~~~~~~~~~~~~~~~i~~~c~-glPlai~~~~ 369 (1446)
..++-.. ......+..-+.+..++..-+ -.-.||.++-
T Consensus 200 ~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 200 RERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred HHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 8877322 122233333444444444444 3445554443
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0043 Score=71.93 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=62.0
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|+++..+......+...+.....+..+|++|.+. .+...+ .....+.+.+++.++..+.+.... +
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C----
Confidence 455588889997766555555555554444566666666553 333332 333679999999999998887432 1
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
.. .+.+..+++.++|.|......
T Consensus 191 -~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 191 -VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred -CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 345677899999999654433
No 106
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.22 E-value=0.0022 Score=75.83 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=84.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
..-|+|..|+|||+||+++++. +...-..+++++. ..+...+...+... . ....++.++ ..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~------~----~~~f~~~~~-~~ 203 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG------E----MQRFRQFYR-NV 203 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc------h----HHHHHHHcc-cC
Confidence 4579999999999999999984 3322233455542 34444555554321 1 123444443 34
Q ss_pred EEEEEECCCCCChhhH--HHhcccccC-CCCCcEEEEEccC-h--------HHHHhhCCCCceecCCCChHhHHHHHHhh
Q 042296 267 FLLVLDDVWNENYNDW--IDLSRPFEA-GAPGSKIVVTTRN-Q--------AVVAIMGTVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~--~~~~~~l~~-~~~gs~iivTtR~-~--------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
-++++||+.......| +++...+.. ...|..||+||.. + .+...+..+..+.+.+++.++-.+++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4788899854321111 122222111 0135678888854 2 22233344567899999999999999888
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhCC
Q 042296 335 SLGTRDFNMHKSLEEIGKKIVIKCNG 360 (1446)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~i~~~c~g 360 (1446)
+-..+ ...+ +++..-|++.+.+
T Consensus 284 ~~~~~-~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 284 AEALS-IRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHcC-CCCC---HHHHHHHHHhcCC
Confidence 74332 2222 3444445555554
No 107
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.20 E-value=0.0033 Score=74.85 Aligned_cols=154 Identities=17% Similarity=0.228 Sum_probs=87.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF--DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
.-|+|..|+|||+||+++++. +.+.. ..+++++. .++..++...+... ..+.. ++.+++
T Consensus 139 l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~----~~~~~~- 199 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEEF----KEKYRS- 199 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHHH----HHHHHh-
Confidence 468999999999999999984 33333 23455543 34445555555321 22222 233322
Q ss_pred eEEEEEECCCCCChhh-H-HHhcccccC-CCCCcEEEEEccC-hH--------HHHhhCCCCceecCCCChHhHHHHHHh
Q 042296 266 KFLLVLDDVWNENYND-W-IDLSRPFEA-GAPGSKIVVTTRN-QA--------VVAIMGTVPAYPLKELSDEDCLNVFTQ 333 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~-~-~~~~~~l~~-~~~gs~iivTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 333 (1446)
.-+||+||+......+ + +.+...+.. ...|..||+|+.. +. +...+.....+.+++.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3488899996432111 1 122222211 1135568888764 22 122233334688999999999999998
Q ss_pred hccCCCCCCCChhHHHHHHHHHHHhCCchhH
Q 042296 334 HSLGTRDFNMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~i~~~c~glPla 364 (1446)
.+...+ ...+ +++...|++.+.|..-.
T Consensus 280 ~~~~~~-~~l~---~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 280 KAEEEG-LELP---DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhcCCCHHH
Confidence 874432 1222 45667788888876543
No 108
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.20 E-value=0.0001 Score=78.94 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=44.4
Q ss_pred hhhcCceeEEEEeCCCC----ccccCcc-------ccCCCCCceeeccCcccc-c----cCcccccccccceeeccCcc
Q 042296 566 RLLKLHRLKVFSLCGYQ----ISELPNS-------VGDLRYLRYLNLSRTCIE-I----LPDSINKLYNLHTLLLEDCD 628 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~----i~~lp~~-------i~~L~~Lr~L~L~~~~i~-~----lp~~i~~L~~L~~L~L~~~~ 628 (1446)
.+.+.+.||..++++.- ..++|+. +-..++|++||||.|-+. + +-+-+.+.+.|++|.|.+|.
T Consensus 53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 34477899999998643 3345543 344568999999999765 2 22346778999999999884
No 109
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.16 E-value=3.8e-05 Score=70.34 Aligned_cols=97 Identities=21% Similarity=0.258 Sum_probs=81.7
Q ss_pred eeEEEEeCCCCccccCc---cccCCCCCceeeccCccccccCccccc-ccccceeeccCccccccccccccCcccceeec
Q 042296 572 RLKVFSLCGYQISELPN---SVGDLRYLRYLNLSRTCIEILPDSINK-LYNLHTLLLEDCDRLKKLCADMGNLIKLHHLN 647 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~---~i~~L~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 647 (1446)
.+..+||+.|.+-.+++ .+....+|...+|++|.++..|+.|.. .+.+.+|++++| .+..+|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 44567888888765554 456678888899999999999998864 458999999997 6999999999999999999
Q ss_pred ccCCCcccccCCccccccccccc
Q 042296 648 NSTTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
++.|. +...|.-|..|.+|-.|
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHh
Confidence 99998 77888888888888777
No 110
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.005 Score=72.89 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=63.5
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc-cChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT-RNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++..-+......+...+..-.+.+++|++| ....+...+ .....+++.+++.++..+.+.+.+...+..
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 456689999997665555666666665544566666555 444554433 334678999999999998888876443221
Q ss_pred CCChhHHHHHHHHHHHhCCchhH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPla 364 (1446)
-. ++....|++.++|.+-.
T Consensus 195 i~----~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 195 HD----EESLKLIAENSSGSMRN 213 (491)
T ss_pred CC----HHHHHHHHHHcCCCHHH
Confidence 11 34556788899887643
No 111
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0082 Score=69.08 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=65.2
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+||+...+......+...+..-..++.+|++|...+ +...+ .....+.+.+++.++..+++......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----
Confidence 5677999999987776666666665554435667777776653 32222 33467999999999999999875411
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
.. .+....+++.++|.|.....+
T Consensus 216 -~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 216 -LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 112266899999999865444
No 112
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.0031 Score=76.97 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=64.9
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEE-EccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV-TTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|++...+......+...+-.-....++|. ||....+...+ .-...|.+++++.++..+.+.+.+-..+.
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 46677999999987766666666655554334555555 44444444332 23467999999999999888876522221
Q ss_pred CCCChhHHHHHHHHHHHhCCchh-HHHHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPL-AAKTL 368 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPl-ai~~~ 368 (1446)
.. -.+....|++.++|.+- |+..+
T Consensus 197 -~~---e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 197 -PF---EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred -CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 13455679999999775 44443
No 113
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0031 Score=71.89 Aligned_cols=241 Identities=17% Similarity=0.140 Sum_probs=129.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-|||..|.|||.|++++.+ ....+......+.++ ......+++..+... -.+..++.. .-
T Consensus 115 plfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~----------~~~~Fk~~y--~~ 176 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN----------EMEKFKEKY--SL 176 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh----------hHHHHHHhh--cc
Confidence 457999999999999999998 455555533344443 334444444444321 223455555 33
Q ss_pred EEEEEECCCCCCh-----hhHHHhcccccCCCCCcEEEEEccC---------hHHHHhhCCCCceecCCCChHhHHHHHH
Q 042296 267 FLLVLDDVWNENY-----NDWIDLSRPFEAGAPGSKIVVTTRN---------QAVVAIMGTVPAYPLKELSDEDCLNVFT 332 (1446)
Q Consensus 267 ~LlVlDdv~~~~~-----~~~~~~~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 332 (1446)
=++++||++--.. ...-.+...+.. .|-.||+|++. +.+...++.+-.+++.+.+.+.....+.
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 4888999854211 112222233333 34489999963 3444556667789999999999999999
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCC---ChhHHHHHHhccccCCCCcccccchhhhhhhcc
Q 042296 333 QHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKT---DQRDWEDVLNCKIWDLPEERCDILPALKVSYYY 409 (1446)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~---~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~ 409 (1446)
+++....-.-++.-..-++.++.+-..-+.-|+..+..+-.... +.+.-++++........ . -.+..+
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~-~-itie~I------- 325 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE-K-ITIEDI------- 325 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccc-c-CCHHHH-------
Confidence 87754433233333344455554444445555544433322211 23333444432111100 0 111111
Q ss_pred CCHHHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCccccc
Q 042296 410 LSPRLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKS 474 (1446)
Q Consensus 410 L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 474 (1446)
.+.+-.| |.|+.+++... ...+....+.++|.....+|.++||.+..
T Consensus 326 ----~~~Va~~-------y~v~~~dl~s~-------~R~~~i~~~RqiamyL~r~lt~~Slp~IG 372 (408)
T COG0593 326 ----QKIVAEY-------YNVKVSDLLSK-------SRTRNIVRPRQIAMYLARELTNLSLPEIG 372 (408)
T ss_pred ----HHHHHHH-------hCCCHHHhhcc-------ccccccchHHHHHHHHHHHHccCcHHHHH
Confidence 1122222 22333332211 01223346788888889999999998873
No 114
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.07 E-value=0.01 Score=65.75 Aligned_cols=133 Identities=12% Similarity=0.078 Sum_probs=65.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|.+|+||||+|+.+++.......-....++.++.. ++. ....+ .........+.+. . .
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~----~~~~g------~~~~~~~~~~~~a-~--~ 106 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLV----GEYIG------HTAQKTREVIKKA-L--G 106 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhh----hhhcc------chHHHHHHHHHhc-c--C
Confidence 3468999999999999999863210111122233443321 111 11110 1112222222222 2 2
Q ss_pred EEEEEECCCCCC--------hhhHHHhcccccCCCCCcEEEEEccChHHHH------hh-CC-CCceecCCCChHhHHHH
Q 042296 267 FLLVLDDVWNEN--------YNDWIDLSRPFEAGAPGSKIVVTTRNQAVVA------IM-GT-VPAYPLKELSDEDCLNV 330 (1446)
Q Consensus 267 ~LlVlDdv~~~~--------~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~------~~-~~-~~~~~l~~L~~~~~~~l 330 (1446)
-+|++|++..-. ....+.+...+........+|+++...+... .. .. ...+.++.++.++-.++
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~I 186 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEI 186 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHH
Confidence 488999996421 1223344444433333335555554332211 01 11 23578889999998888
Q ss_pred HHhhcc
Q 042296 331 FTQHSL 336 (1446)
Q Consensus 331 f~~~a~ 336 (1446)
+.+.+.
T Consensus 187 l~~~~~ 192 (261)
T TIGR02881 187 AERMVK 192 (261)
T ss_pred HHHHHH
Confidence 887763
No 115
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.07 E-value=0.01 Score=69.73 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=63.4
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++..-....+..+...+......+.+|++|.+.+ +...+ .....+++.+++.++..+.+...+-..+.
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 4555889999866544455666655544445667667765543 23222 22356888999999988888876633221
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
..+ ++.+..+++.++|.|..+...
T Consensus 195 ~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 195 KIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCC---HHHHHHHHHHcCCChHHHHHH
Confidence 111 356777889999988655433
No 116
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.005 Score=74.20 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=59.7
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
++.-++|+|+|..-+......+...+..-...+++|++|.+ ..+...+ .....+++++++.++..+.+.+.+-..+.
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi- 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV- 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 56668999999876666666666655544456666655543 3333222 22356889999998877766655432221
Q ss_pred CCChhHHHHHHHHHHHhCCchhHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
... .+....|++.++|.+-.+
T Consensus 197 ~~~---~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 197 EFE---NAALDLLARAANGSVRDA 217 (509)
T ss_pred CCC---HHHHHHHHHHcCCcHHHH
Confidence 111 334566888888877433
No 117
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.006 Score=74.41 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=63.6
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc-cChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT-RNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
++.-++|+|+|...+...+..+...+..-....++|++| ....+...+ .....++++.++.++..+.+.+.+...+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi- 201 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV- 201 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 445588999998877677777776665544455666554 444444332 33467999999999998888876633221
Q ss_pred CCChhHHHHHHHHHHHhCCchhHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
... .+....|++.++|.+--+
T Consensus 202 ~ie---~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 202 PAE---PQALRLLARAARGSMRDA 222 (618)
T ss_pred CCC---HHHHHHHHHHcCCCHHHH
Confidence 111 345667888888876433
No 118
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0061 Score=73.29 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=62.5
Q ss_pred ceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc-cChHHHHh-hCCCCceecCCCChHhHHHHHHhhccCCCCCC
Q 042296 265 KKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT-RNQAVVAI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRDFN 342 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~ 342 (1446)
++-++|+|++...+...+..+...+......+.+|++| ....+... ......+++.+++.++....+...+...+. .
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~ 197 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-K 197 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-C
Confidence 34469999997765566666666554433455555444 44444333 233467899999999998888876533221 1
Q ss_pred CChhHHHHHHHHHHHhCCch-hHHHHHHh
Q 042296 343 MHKSLEEIGKKIVIKCNGLP-LAAKTLGG 370 (1446)
Q Consensus 343 ~~~~~~~~~~~i~~~c~glP-lai~~~~~ 370 (1446)
.. .+.+..+++.++|.+ .|+..+-.
T Consensus 198 Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 198 IE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred CC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11 345667888898865 44444443
No 119
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.04 E-value=0.004 Score=72.86 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=79.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH-cCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ-LSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~ 266 (1446)
+-++|++|+|||++|+++++. ....| +.+.. ..+.... ++ ........+.+. -...+
T Consensus 159 vLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~----~~l~~~~---~g--------~~~~~i~~~f~~a~~~~p 216 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----SELVRKY---IG--------EGARLVREIFELAKEKAP 216 (364)
T ss_pred EEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----HHHHHHh---hh--------HHHHHHHHHHHHHHhcCC
Confidence 578999999999999999983 33333 22221 1111111 00 011112222222 23467
Q ss_pred EEEEEECCCCCC-----------hh---hHHHhcccccC--CCCCcEEEEEccChHHHH-hh----CCCCceecCCCChH
Q 042296 267 FLLVLDDVWNEN-----------YN---DWIDLSRPFEA--GAPGSKIVVTTRNQAVVA-IM----GTVPAYPLKELSDE 325 (1446)
Q Consensus 267 ~LlVlDdv~~~~-----------~~---~~~~~~~~l~~--~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~ 325 (1446)
.+|++|+++.-. .. .+..+...+.. ...+.+||.||...+... .+ .....+.+...+.+
T Consensus 217 ~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~ 296 (364)
T TIGR01242 217 SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred cEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHH
Confidence 899999986420 01 12222222211 124678888887543221 11 11346889999999
Q ss_pred hHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 326 DCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 326 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
+..++|..++.+... ...-. ...+++.+.|..
T Consensus 297 ~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 297 GRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 999999988744321 11112 344667777654
No 120
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.0084 Score=72.59 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=68.0
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-+||+|++.......+..+...+..-.....+|++|.. ..+...+ .....+++..++.++..+.+...+.....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 356679999999776656666776666443345556655544 4444332 22357899999999999888876643221
Q ss_pred CCCChhHHHHHHHHHHHhCCch-hHHHHHHhhh
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLP-LAAKTLGGLL 372 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~L 372 (1446)
... .+.+..|++..+|.+ .|+..+..++
T Consensus 197 -~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 -DYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred -CCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111 355677888888854 6777766554
No 121
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.03 E-value=0.0064 Score=73.12 Aligned_cols=151 Identities=15% Similarity=0.203 Sum_probs=86.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF--DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
+-|||..|+|||.|++++++. ....+ ..+++++. .++..++...+... ..+ .+++.+++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~------~~~----~f~~~y~~- 377 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG------KGD----SFRRRYRE- 377 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc------cHH----HHHHHhhc-
Confidence 458899999999999999984 33332 23455543 34444554444221 112 23333332
Q ss_pred eEEEEEECCCCCCh-hhHH-HhcccccC-CCCCcEEEEEccCh---------HHHHhhCCCCceecCCCChHhHHHHHHh
Q 042296 266 KFLLVLDDVWNENY-NDWI-DLSRPFEA-GAPGSKIVVTTRNQ---------AVVAIMGTVPAYPLKELSDEDCLNVFTQ 333 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~-~~~~-~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 333 (1446)
-=+|||||+..... ..|. .+...+.. ...|..|||||+.. .+...+...-.++++..+.+.-.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 34788999965322 1222 22222211 12356789988752 2334455567799999999999999998
Q ss_pred hccCCCCCCCChhHHHHHHHHHHHhCCc
Q 042296 334 HSLGTRDFNMHKSLEEIGKKIVIKCNGL 361 (1446)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~i~~~c~gl 361 (1446)
++.... ...+ ++++.-|++.+.+.
T Consensus 458 ka~~r~-l~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 458 KAVQEQ-LNAP---PEVLEFIASRISRN 481 (617)
T ss_pred HHHhcC-CCCC---HHHHHHHHHhccCC
Confidence 874432 2222 35555566666554
No 122
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.01 E-value=0.0038 Score=75.19 Aligned_cols=153 Identities=14% Similarity=0.199 Sum_probs=89.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFD--LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
.+-|+|..|+|||+||+++++ ++...+. .+++++. .++..++...+... ..+. +++.++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~----~~~~~~- 210 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRNN------TMEE----FKEKYR- 210 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC------cHHH----HHHHHh-
Confidence 356899999999999999998 4444442 3445543 23444454444321 1222 233333
Q ss_pred ceEEEEEECCCCCChhh-H-HHhcc---cccCCCCCcEEEEEccChH---------HHHhhCCCCceecCCCChHhHHHH
Q 042296 265 KKFLLVLDDVWNENYND-W-IDLSR---PFEAGAPGSKIVVTTRNQA---------VVAIMGTVPAYPLKELSDEDCLNV 330 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~~~~-~-~~~~~---~l~~~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 330 (1446)
+.-+||+||+......+ + +++.. .+.. .|..||+||.... +...+.....+++++.+.++-.++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 24489999995432111 1 22222 2222 3456888886431 223344446789999999999999
Q ss_pred HHhhccCCCCCCCChhHHHHHHHHHHHhCCchhH
Q 042296 331 FTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 331 f~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPla 364 (1446)
+.+.+...+ ...+ +++..-|++.++|..-.
T Consensus 289 l~~~~~~~~-~~l~---~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 289 LKKKAEEEG-IDLP---DEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHcC-CCCC---HHHHHHHHcCcCCCHHH
Confidence 998874322 1222 45677788888877653
No 123
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.013 Score=66.98 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc-cChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT-RNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|++...+......+...+..-..+..+|++| +...+.... +....+.+.+++.++..+.+.+.....
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-- 216 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-- 216 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc--
Confidence 3567799999998776666666655554333345544444 433333222 223579999999999999998743111
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHHHHHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAAKTLG 369 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai~~~~ 369 (1446)
. --.+.+..|++.++|.|.....+.
T Consensus 217 -~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 217 -G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred -C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 113446779999999997655443
No 124
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.0054 Score=74.52 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=60.5
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHh-hCCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++...+......+...+..-...+++|++|.+. .+... .+....+.+..++.++..+.+.+.+-..+.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi- 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI- 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 566789999997655444555555554333456677666543 22222 122256888899999998888876643321
Q ss_pred CCChhHHHHHHHHHHHhCCchhHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
.. -.+....|++.++|.+--+
T Consensus 197 ~i---d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 197 AY---EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred Cc---CHHHHHHHHHHhCCCHHHH
Confidence 11 1345677889998887433
No 125
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.0089 Score=72.69 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=62.0
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|++...+......+...+..-...+.+|.+|.+ +.+...+ .....++++.++.++..+.+.+.+...+.
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 356679999999776555566666555544345666655543 3332221 11256889999999988887766532221
Q ss_pred CCCChhHHHHHHHHHHHhCCchh-HHHHHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPL-AAKTLG 369 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 369 (1446)
.. -++....|++.++|.+- |+..+-
T Consensus 197 -~~---~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 197 -PF---DATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred -CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 13455678888999764 444443
No 126
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.96 E-value=0.011 Score=64.14 Aligned_cols=175 Identities=15% Similarity=0.155 Sum_probs=102.8
Q ss_pred ceeEccCCchHHHHHHHHHcccchh-----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQ-----DHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
.-|+|.+|.|||++++++....-.. ..+ .++.|.+-..++...+...|+.+++.+.. .......+...+...+
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEALGAPYR-PRDRVAKLEQQVLRLL 141 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHhCcccC-CCCCHHHHHHHHHHHH
Confidence 3599999999999999998532111 111 46778888889999999999999998865 3445555555555555
Q ss_pred CC-ceEEEEEECCCCC---ChhhHHHhcc---cccCCCCCcEEEEEccChHHHHhh-----CCCCceecCCCChHhH-HH
Q 042296 263 SQ-KKFLLVLDDVWNE---NYNDWIDLSR---PFEAGAPGSKIVVTTRNQAVVAIM-----GTVPAYPLKELSDEDC-LN 329 (1446)
Q Consensus 263 ~~-~~~LlVlDdv~~~---~~~~~~~~~~---~l~~~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~-~~ 329 (1446)
+. +--+||+|.+.+. ...+-.++.. .+.+.-.=+-|.|-|+..--+-.. +-..++.++.-..++. ..
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~ 221 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRR 221 (302)
T ss_pred HHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHH
Confidence 43 4558899998542 1112222222 222222334566666543222111 1124566766665544 44
Q ss_pred HHHhhc--cCCCCCCCChhHHHHHHHHHHHhCCchhHH
Q 042296 330 VFTQHS--LGTRDFNMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 330 lf~~~a--~~~~~~~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
|+.... ..-+.... -...++++.|...++|..--+
T Consensus 222 LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 222 LLASFERALPLRKPSN-LASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHH
Confidence 443322 11122111 233678999999999987444
No 127
>PRK08116 hypothetical protein; Validated
Probab=96.96 E-value=0.0026 Score=70.11 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=58.3
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|..|+|||.||.++++. ...+-..++++++ .+++..+........ ..+..+ +.+.+.+-.
T Consensus 117 l~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~d- 180 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG---KEDENE----IIRSLVNAD- 180 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc---cccHHH----HHHHhcCCC-
Confidence 568999999999999999984 3333344566653 345555554443221 112222 233344333
Q ss_pred EEEEECCCCCChhhHHH--hcccccC-CCCCcEEEEEccCh
Q 042296 268 LLVLDDVWNENYNDWID--LSRPFEA-GAPGSKIVVTTRNQ 305 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~iivTtR~~ 305 (1446)
||||||+-.....+|.. +...+.. ...|..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995544455543 2222221 12456799999754
No 128
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.013 Score=66.45 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=63.2
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|+++..+......+...+..-..++.+|+||.+.+ +...+ +-...+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 3444556799988776666666665554445777777777653 33222 33467999999999999888765311
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
. ..+.+..++..++|.|.....+
T Consensus 181 ~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1 1233556789999999755444
No 129
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.92 E-value=0.01 Score=68.73 Aligned_cols=155 Identities=12% Similarity=0.152 Sum_probs=83.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCV--SEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
+-++|..|+||||+|+.+++.. ....+. ..++.+ +...... ...+.+.++..... .-...
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~~i~~~~~~~~---------------~~~~~ 102 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRNKIKEFARTAP---------------VGGAP 102 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHHHHHHHHhcCC---------------CCCCC
Confidence 4689999999999999998732 111221 122332 2211111 11111111110000 00123
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCCCC
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDFNM 343 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~ 343 (1446)
+-+||+|++..-....+..+...+......+++|+++... .+.... .....+++.+++.++....+...+...+. ..
T Consensus 103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i 181 (319)
T PRK00440 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-EI 181 (319)
T ss_pred ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-CC
Confidence 5689999986554344445555444444556777776432 121111 12246889999999988888877643321 11
Q ss_pred ChhHHHHHHHHHHHhCCchhH
Q 042296 344 HKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 344 ~~~~~~~~~~i~~~c~glPla 364 (1446)
. .+.+..+++.++|.+--
T Consensus 182 ~---~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 182 T---DDALEAIYYVSEGDMRK 199 (319)
T ss_pred C---HHHHHHHHHHcCCCHHH
Confidence 1 34566788889987654
No 130
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.0092 Score=73.06 Aligned_cols=99 Identities=12% Similarity=0.149 Sum_probs=63.5
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc-cChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT-RNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++...+......+...+..-..++++|++| ....+...+ .....+++..++.++....+.+.+-..+.
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi- 209 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV- 209 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 455679999997766555666666655444566665544 444444333 23357899999999999888877643221
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAK 366 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~ 366 (1446)
... .+....|++.++|.+.-+.
T Consensus 210 ~i~---~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 210 EVE---DEALALIARAAEGSVRDGL 231 (598)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHH
Confidence 111 3556778899999875443
No 131
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.85 E-value=0.0029 Score=66.93 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=28.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVS 224 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 224 (1446)
++|+|..|+||||++..+.. .....|+.+++++-.
T Consensus 16 ~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE 50 (241)
T ss_pred EEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence 46999999999999999987 467789888777553
No 132
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0085 Score=70.65 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=64.2
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc-cChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT-RNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++..-....+..+...+....+.+.+|++| +...+...+ .....+++.+++.++..+.+...+-..+.
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~- 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI- 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456688999997665566777777766554566666555 444444332 12246889999999988887776532221
Q ss_pred CCChhHHHHHHHHHHHhCCchh-HHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPL-AAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPl-ai~~~ 368 (1446)
.. -.+.+..|++.++|.+- |+..+
T Consensus 205 ~i---~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 205 SV---DADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 14567789999999774 44433
No 133
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.84 E-value=0.00012 Score=75.13 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=67.7
Q ss_pred HHHhhhcCceeEEEEeCCCCcc-----ccCccccCCCCCceeeccCcccc----ccCc-------ccccccccceeeccC
Q 042296 563 ILQRLLKLHRLKVFSLCGYQIS-----ELPNSVGDLRYLRYLNLSRTCIE----ILPD-------SINKLYNLHTLLLED 626 (1446)
Q Consensus 563 ~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~----~lp~-------~i~~L~~L~~L~L~~ 626 (1446)
....+..+..+.-+|||||.|. .+-..|.+-.+|+.-+++.-... ++|+ .+-++++|++.+||.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 3444456888899999999875 34556677788999888864221 3443 356789999999999
Q ss_pred cccccccccc----ccCcccceeecccCCCccccc
Q 042296 627 CDRLKKLCAD----MGNLIKLHHLNNSTTNSLEEM 657 (1446)
Q Consensus 627 ~~~~~~lp~~----i~~L~~L~~L~l~~~~~~~~~ 657 (1446)
|-.-...|.. |++-+.|.||.+++|. ++.+
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 8665566654 5667899999999987 4433
No 134
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.83 E-value=0.0018 Score=63.49 Aligned_cols=20 Identities=40% Similarity=0.408 Sum_probs=18.3
Q ss_pred eeEccCCchHHHHHHHHHcc
Q 042296 189 KVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~ 208 (1446)
-|+|.+|+||||+|+.++++
T Consensus 2 ll~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHH
T ss_pred EEECcCCCCeeHHHHHHHhh
Confidence 47999999999999999984
No 135
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.81 E-value=0.00013 Score=90.62 Aligned_cols=90 Identities=22% Similarity=0.339 Sum_probs=39.0
Q ss_pred ccccccEEEeecc-cCccccC---ccccccCCcccEEEeccCCCCcccCCC---CCCCCccEEEEeecCCcccCCccccC
Q 042296 1006 LSCRIEYLELINC-QGLVKLP---QTSLSLINSLKEIGIYNCSSLVCFPEA---ALPSQLRIISIQYCNALKSLPVTWMH 1078 (1446)
Q Consensus 1006 ~~~~L~~L~l~~~-~~l~~lp---~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~p~~~~~ 1078 (1446)
..+.|+.|++++| ......+ ......+++|+.|++++|..++...-. ..+++|+.|.+.+|..++........
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 4455666666552 2222111 012333455666666665543322210 11445566555555543322222222
Q ss_pred CCCCCccEEEEEecCCC
Q 042296 1079 DTNTSLETLKVYGCNLL 1095 (1446)
Q Consensus 1079 ~~~~~L~~L~l~~~~~l 1095 (1446)
..+++|++|++++|..+
T Consensus 292 ~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhcCcccEEeeecCccc
Confidence 23344566666555544
No 136
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.77 E-value=0.0025 Score=73.36 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=57.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc--CC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL--SQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~ 264 (1446)
.+.++|++|+|||++|+.+++.......|+.+.||++++.++..++...+.-. +... ... ..-..+.+++.. .+
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy--~~~-~G~f~~~~~~A~~~p~ 271 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGF--RRK-DGIFYNFCQQAKEQPE 271 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCe--Eec-CchHHHHHHHHHhccc
Confidence 45688999999999999999854445578889999999988877765432110 0000 000 011112222222 24
Q ss_pred ceEEEEEECCCCCChh
Q 042296 265 KKFLLVLDDVWNENYN 280 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~~~ 280 (1446)
+++++|+|++...+..
T Consensus 272 ~~~vliIDEINRani~ 287 (459)
T PRK11331 272 KKYVFIIDEINRANLS 287 (459)
T ss_pred CCcEEEEehhhccCHH
Confidence 7899999999776543
No 137
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.77 E-value=7.4e-05 Score=86.99 Aligned_cols=94 Identities=27% Similarity=0.242 Sum_probs=44.1
Q ss_pred eeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCcccccccccc-ccCcccceeecccC
Q 042296 572 RLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNST 650 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~ 650 (1446)
.|.+-+.++|.+..+..++.-+++|+.|||++|++++.- .+..|.+|++|||++| .+..+|.- ..... |+.|++++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecc
Confidence 344444555555444444545555555555555555442 4455555555555554 24444431 11222 55555555
Q ss_pred CCcccccCCccccccccccc
Q 042296 651 TNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 651 ~~~~~~~p~~i~~L~~L~~L 670 (1446)
|. ++.+ .+|.+|++|+.|
T Consensus 242 N~-l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 242 NA-LTTL-RGIENLKSLYGL 259 (1096)
T ss_pred cH-HHhh-hhHHhhhhhhcc
Confidence 44 3333 344444444444
No 138
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.023 Score=69.80 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=62.6
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEE-EEccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIV-VTTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|+++.-.......+...+..-...+.+| +|++...+...+ .....+++..++.++....+.+.+...+.
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi- 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI- 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 455678999997765555666666665443455555 454444554332 34467999999999988777765532221
Q ss_pred CCChhHHHHHHHHHHHhCCch-hHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLP-LAAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glP-lai~~~ 368 (1446)
... .+.+..|++.++|.. .|+..+
T Consensus 205 ~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 205 QID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred CCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 111 456677999999854 444433
No 139
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.73 E-value=0.00019 Score=83.71 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=48.5
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccccccccCcccceeec
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLN 647 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 647 (1446)
-++.|+.|||++|.++..- .+..+.+|++|||++|.+..+|. +....+ |+.|.+++| -+..+ .+|.+|++|++||
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhhhhhhccc
Confidence 3456666677776666553 55666667777777776666664 222333 666666665 35555 3466666666666
Q ss_pred ccCCC
Q 042296 648 NSTTN 652 (1446)
Q Consensus 648 l~~~~ 652 (1446)
++.|-
T Consensus 261 lsyNl 265 (1096)
T KOG1859|consen 261 LSYNL 265 (1096)
T ss_pred hhHhh
Confidence 66664
No 140
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.69 E-value=0.0055 Score=61.08 Aligned_cols=86 Identities=15% Similarity=-0.044 Sum_probs=46.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc-
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK- 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~- 265 (1446)
.+.|+|.+|+||||+|+.++... ......++++..+........... ........ ...........+.+..+..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKLK 78 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhcC
Confidence 35689999999999999998742 222234555555544332222211 11111111 2222233333444444433
Q ss_pred eEEEEEECCCCC
Q 042296 266 KFLLVLDDVWNE 277 (1446)
Q Consensus 266 ~~LlVlDdv~~~ 277 (1446)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 499999999765
No 141
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.028 Score=69.75 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=63.3
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++..-.....+.+...+......+.+|++|.+ ..+...+ .....+.+..++.++....+.+.+...+.
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl- 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI- 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45678999999765555566666555544456666665543 3333322 22356888999999988888877643221
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKT 367 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~ 367 (1446)
... .+.+..|++.++|.+..+..
T Consensus 198 ~i~---~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 198 NLE---PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 111 35677899999998854433
No 142
>PRK08118 topology modulation protein; Reviewed
Probab=96.66 E-value=0.00076 Score=68.47 Aligned_cols=34 Identities=32% Similarity=0.573 Sum_probs=26.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchh-ccCCceEE
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ-DHFDLKAW 220 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~w 220 (1446)
.+.|+|++|+||||+|+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 35799999999999999999854333 45677776
No 143
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.032 Score=68.87 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=63.6
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEE-EEEccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKI-VVTTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i-ivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++.......+..+...+-.-...+.+ ++||+...+.... .....+++.+++.++..+.+...+...+.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI- 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI- 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 56668999999776656666666555443334454 4555555554332 33467999999999998888775532221
Q ss_pred CCChhHHHHHHHHHHHhCCch-hHHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLP-LAAKTLG 369 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glP-lai~~~~ 369 (1446)
... .+.+..|++.++|.+ .|+..+.
T Consensus 196 ~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 196 SYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 111 345667889998866 4444443
No 144
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.62 E-value=0.00023 Score=88.23 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=54.1
Q ss_pred CCcCCceeecccCcccc--cccCCCCccccceeeeccC-CCchhh----hhhhcCCCCccEEEeccccCcccc--CccCC
Q 042296 1159 PDSLEHLEVGICSKLKF--LSCSGNLPQALKFICVFRC-SKLESI----AERLDNNTSLEVFKIGCCDNLKIL--PGGLH 1229 (1446)
Q Consensus 1159 ~~~L~~L~l~~c~~L~~--l~~~~~~~~~L~~L~l~~~-~~l~~~----~~~~~~l~~L~~L~l~~~~~~~~l--p~~~~ 1229 (1446)
.++++.+.+.+|..+.. +.........|+.|++++| ...... ......+.+|+.|++++|..+... ..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 35666777777766665 3333444556666666652 222211 122344566666666666543221 11111
Q ss_pred CCCcccEEEEeccCCCcc--cCCCCCCcccccceecccccCc
Q 042296 1230 KLRHLQEVGIWSCGNLVS--FPEGGLPSANLTKLQITWCDKL 1269 (1446)
Q Consensus 1230 ~l~~L~~L~l~~c~~l~~--lp~~~~~~~~L~~L~l~~c~~l 1269 (1446)
.+++|++|.+.+|..++. +-.....+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 255666666666654332 1111222345666666655554
No 145
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.61 E-value=0.0012 Score=82.21 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=75.1
Q ss_pred cCCCCcceecccccccCCCCcchhHHHHhhh-cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccC--cccc
Q 042296 538 DDTEHLRTFLPVMLSNCWGGYLAYSILQRLL-KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILP--DSIN 614 (1446)
Q Consensus 538 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp--~~i~ 614 (1446)
.-+|.||+|.+.+..- ..+-...++ ++++|+.||+|+++++.+ ..+++|++|+.|.+++-.+..-+ ..+.
T Consensus 145 ~~LPsL~sL~i~~~~~------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQF------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred hhCcccceEEecCcee------cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 3577888887665321 122244555 899999999999999888 67889999999998887766432 3578
Q ss_pred cccccceeeccCcccccc--cc----ccccCcccceeecccCCC
Q 042296 615 KLYNLHTLLLEDCDRLKK--LC----ADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 615 ~L~~L~~L~L~~~~~~~~--lp----~~i~~L~~L~~L~l~~~~ 652 (1446)
+|++|++||+|....... +. +.-..|++||.||.+++.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 899999999987432211 11 112348889999888775
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.61 E-value=0.0008 Score=83.60 Aligned_cols=136 Identities=24% Similarity=0.207 Sum_probs=66.2
Q ss_pred CCCceeeccCcccc--ccCcccc-cccccceeeccCcccc-ccccccccCcccceeecccCCCcccccCCcccccccccc
Q 042296 594 RYLRYLNLSRTCIE--ILPDSIN-KLYNLHTLLLEDCDRL-KKLCADMGNLIKLHHLNNSTTNSLEEMPRGIGKLTFLQT 669 (1446)
Q Consensus 594 ~~Lr~L~L~~~~i~--~lp~~i~-~L~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 669 (1446)
.+||+||+++...- .-|..++ .|+.|+.|.+++-... ..+-.-..++++|..||+++++ +..+ .+|++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 34555555553311 1122332 3566666666552111 1111223456677777777766 5555 56777777777
Q ss_pred cCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhcc
Q 042296 670 LCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDM 749 (1446)
Q Consensus 670 L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 749 (1446)
|............ ...+.++++|+.|++|...... .........+.
T Consensus 200 L~mrnLe~e~~~~-----------------------------l~~LF~L~~L~vLDIS~~~~~~-----~~~ii~qYlec 245 (699)
T KOG3665|consen 200 LSMRNLEFESYQD-----------------------------LIDLFNLKKLRVLDISRDKNND-----DTKIIEQYLEC 245 (699)
T ss_pred HhccCCCCCchhh-----------------------------HHHHhcccCCCeeecccccccc-----chHHHHHHHHh
Confidence 7322111111111 1234456666666666422211 11122334455
Q ss_pred CCCCCCcceEEEeccC
Q 042296 750 LRPHQNLEQFFISGYG 765 (1446)
Q Consensus 750 l~~~~~L~~L~l~~~~ 765 (1446)
-..+|+|+.|+.+++.
T Consensus 246 ~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTD 261 (699)
T ss_pred cccCccccEEecCCcc
Confidence 5567777777777654
No 147
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.59 E-value=0.0082 Score=63.83 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=91.8
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEE-EEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc--CCc
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAW-TCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL--SQK 265 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~ 265 (1446)
-.||++|.|||+.|..++...--.+-|.+++- .++|..-...-+-. ...+.+.+........ ..+
T Consensus 61 LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~------------Kik~fakl~~~~~~~~~~~~~ 128 (346)
T KOG0989|consen 61 LFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE------------KIKNFAKLTVLLKRSDGYPCP 128 (346)
T ss_pred EeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh------------hhcCHHHHhhccccccCCCCC
Confidence 47899999999999888764333455655443 44444322210000 0111111111110000 112
Q ss_pred e-EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCCC
Q 042296 266 K-FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDFN 342 (1446)
Q Consensus 266 ~-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~ 342 (1446)
+ =.||||+++....+.|..+...+......++.|..+-.- .+.... ..-..|..++|.+++..+-+...|-.++...
T Consensus 129 ~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~ 208 (346)
T KOG0989|consen 129 PFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI 208 (346)
T ss_pred cceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC
Confidence 3 378899999888899999988887766677755544332 222111 1124588999999999999988875443222
Q ss_pred CChhHHHHHHHHHHHhCCch
Q 042296 343 MHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 343 ~~~~~~~~~~~i~~~c~glP 362 (1446)
+ .+..+.|++.++|.-
T Consensus 209 d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 209 D----DDALKLIAKISDGDL 224 (346)
T ss_pred C----HHHHHHHHHHcCCcH
Confidence 2 344566888888753
No 148
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.58 E-value=0.028 Score=67.42 Aligned_cols=100 Identities=12% Similarity=0.138 Sum_probs=64.2
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++...+......+...+..-...+++|++|.+. .+.... .....+++.+++.++..+.+.+.+-..+.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi- 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV- 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456688999997776666666666665444567777666553 222221 22357899999999998888766533221
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKT 367 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~ 367 (1446)
... ++.+..|++.++|.+--+..
T Consensus 195 ~i~---~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 195 SYE---PEALEILARSGNGSLRDTLT 217 (535)
T ss_pred CCC---HHHHHHHHHHcCCcHHHHHH
Confidence 111 35667799999998844433
No 149
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00034 Score=72.98 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=16.5
Q ss_pred CCCceeeccCcccccc---CcccccccccceeeccCc
Q 042296 594 RYLRYLNLSRTCIEIL---PDSINKLYNLHTLLLEDC 627 (1446)
Q Consensus 594 ~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~ 627 (1446)
++++.|||.+|.|+.- -.-+.+|++|++|+++.|
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 4555555555555422 122234555555555554
No 150
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.039 Score=66.24 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEE-EccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV-TTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|++..-.......+...+........+|+ ||+...+.... .....+.+.+++.++....+.+.+-..+.
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 35667999999976654455566555544334555554 44444443322 23357889999999988888776533221
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
... .+.+..|++.++|.+-.+
T Consensus 197 -~id---~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 197 -EYE---EKALDLLAQASEGGMRDA 217 (486)
T ss_pred -CCC---HHHHHHHHHHcCCCHHHH
Confidence 111 345566888888866443
No 151
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.58 E-value=0.021 Score=72.50 Aligned_cols=97 Identities=10% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc-cChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT-RNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.++.-++|||++...+...+..+...+..-...+.+|++| ....+...+ .....|++..++.++..+.+.+.+-..+
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG- 196 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG- 196 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-
Confidence 3555678899998877677777777766544566666555 444454433 3346789999999998888876542222
Q ss_pred CCCChhHHHHHHHHHHHhCCchh
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPL 363 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPl 363 (1446)
.... .+....|++.++|.+.
T Consensus 197 v~id---~eal~lLa~~sgGdlR 216 (824)
T PRK07764 197 VPVE---PGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCCC---HHHHHHHHHHcCCCHH
Confidence 1111 3445678899999774
No 152
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.047 Score=57.64 Aligned_cols=63 Identities=17% Similarity=0.021 Sum_probs=41.2
Q ss_pred EEEEccChHHHHhhC--CCCceecCCCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhH
Q 042296 298 IVVTTRNQAVVAIMG--TVPAYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 298 iivTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPla 364 (1446)
|=-|||.-.+..... -..+.+++..+.+|-.+...+.|..-...- -++-+.+|+++..|-|--
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRI 219 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHH
Confidence 345888654433321 124578888899999888888773322111 145678899999999953
No 153
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.032 Score=69.07 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=62.8
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEE-EccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV-TTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++=++|+|++..-+...+..+...+..-..++.+|+ ||+...+...+ .....+++.+++.++....+.+.+...+.
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi- 198 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI- 198 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 4555889999977766667777766655445666555 54545554433 33467999999999998888876633221
Q ss_pred CCChhHHHHHHHHHHHhCCchh
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPL 363 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPl 363 (1446)
... .+.+..|++.++|..-
T Consensus 199 ~i~---~~al~~La~~s~gdlr 217 (614)
T PRK14971 199 TAE---PEALNVIAQKADGGMR 217 (614)
T ss_pred CCC---HHHHHHHHHHcCCCHH
Confidence 111 3456778899998664
No 154
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.03 Score=65.87 Aligned_cols=102 Identities=11% Similarity=0.180 Sum_probs=59.7
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc-cChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT-RNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++.......+..+...+......+.+|++| +...+.... .....+++.+++.++....+...+...+.
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~- 185 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI- 185 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-
Confidence 345589999996554445666654443333345555555 333332222 22356899999999988888876643321
Q ss_pred CCChhHHHHHHHHHHHhCCchh-HHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPL-AAKTLG 369 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 369 (1446)
... .+.+..+++.++|.+- |+..+-
T Consensus 186 ~i~---~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 186 KFE---DDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred CCC---HHHHHHHHHhCCCCHHHHHHHHH
Confidence 111 3566778888888654 444333
No 155
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.034 Score=67.77 Aligned_cols=105 Identities=13% Similarity=0.177 Sum_probs=66.5
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEE-EEccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIV-VTTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++..-+......+...+..-.....+| +||....+...+ .....+++..++.++..+.+.+.+...+.
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi- 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV- 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-
Confidence 456688999997776666667666665544455555 455545554433 33467999999999988888776533221
Q ss_pred CCChhHHHHHHHHHHHhCCch-hHHHHHHhhh
Q 042296 342 NMHKSLEEIGKKIVIKCNGLP-LAAKTLGGLL 372 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glP-lai~~~~~~L 372 (1446)
... .+....|++..+|.+ -|+..+-.++
T Consensus 196 ~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 196 VVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111 345566888888876 4555554443
No 156
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.33 E-value=0.069 Score=58.82 Aligned_cols=140 Identities=19% Similarity=0.274 Sum_probs=84.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcC-CCCCCC-----CCHHHHHHHHHH-
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGT-DQNVDS-----LDFDKLQVELKK- 260 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~~~-----~~~~~~~~~l~~- 260 (1446)
+-|+|..|.|||.+.+++.+.... ..+|+++-+.+..+.++..|+.+.+. +..... .+..+.+..+.+
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 368999999999999999985422 36899999999999999999999862 222111 112222333333
Q ss_pred -Hc--CCceEEEEEECCCCCChhhHHHhccc----cc-CCCCCcEEEEEccChHHHHh---hCCCC--ceecCCCChHhH
Q 042296 261 -QL--SQKKFLLVLDDVWNENYNDWIDLSRP----FE-AGAPGSKIVVTTRNQAVVAI---MGTVP--AYPLKELSDEDC 327 (1446)
Q Consensus 261 -~l--~~~~~LlVlDdv~~~~~~~~~~~~~~----l~-~~~~gs~iivTtR~~~v~~~---~~~~~--~~~l~~L~~~~~ 327 (1446)
.. +++.++||||+++.- .|.+.+.-+ +. -.....-+|+++....-... +|+.. ++..+.-+.+|-
T Consensus 108 ~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~ 185 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEET 185 (438)
T ss_pred HHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHH
Confidence 12 246899999999543 222221100 00 01122344555543222222 34443 356678888888
Q ss_pred HHHHHhh
Q 042296 328 LNVFTQH 334 (1446)
Q Consensus 328 ~~lf~~~ 334 (1446)
.+++.+.
T Consensus 186 ~~Il~~~ 192 (438)
T KOG2543|consen 186 QVILSRD 192 (438)
T ss_pred HHHHhcC
Confidence 8888653
No 157
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.069 Score=66.10 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=60.1
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++.......+..+...+..-...+.+|++|.+ ..+...+ .....+++..++.++....+.+.+...+.
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi- 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI- 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-
Confidence 45568899999776656676776666543344555544443 3333332 22356888889998888877766533221
Q ss_pred CCChhHHHHHHHHHHHhCCchhHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
... .+.+..|++.++|.+..+
T Consensus 199 ~is---~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 199 EIE---PEALTLVAQRSQGGLRDA 219 (620)
T ss_pred CCC---HHHHHHHHHHcCCCHHHH
Confidence 111 245677888998877544
No 158
>PRK08181 transposase; Validated
Probab=96.29 E-value=0.0076 Score=65.89 Aligned_cols=99 Identities=21% Similarity=0.167 Sum_probs=53.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.++|.+|+|||.||..+.+. .......+.|+++ .++...+..... ....+..... + .+.=
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~------~~~~~~~l~~----l-~~~d 169 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR------ELQLESAIAK----L-DKFD 169 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh------CCcHHHHHHH----H-hcCC
Confidence 479999999999999999873 3333344566654 344454433211 1122222222 2 2345
Q ss_pred EEEEECCCCCChhhHH--HhcccccCCCCCcEEEEEccCh
Q 042296 268 LLVLDDVWNENYNDWI--DLSRPFEAGAPGSKIVVTTRNQ 305 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~--~~~~~l~~~~~gs~iivTtR~~ 305 (1446)
|||+||+......+|. .+...+...-.+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999554333332 2222222211123689998764
No 159
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.26 E-value=0.018 Score=67.63 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=78.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc-CCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL-SQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~ 265 (1446)
.+-++|.+|+|||++|+++++. .... |+.++. ..+ .....+ ........+.+.. ...
T Consensus 167 gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~~l----~~~~~g-------~~~~~i~~~f~~a~~~~ 224 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----SEL----VQKFIG-------EGARLVRELFELAREKA 224 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----HHH----hHhhcc-------chHHHHHHHHHHHHhcC
Confidence 4578999999999999999983 2222 333321 111 111110 1112222222222 346
Q ss_pred eEEEEEECCCCC-----------ChhhHHHhcccc---cC--CCCCcEEEEEccChHHHHh-h---C-CCCceecCCCCh
Q 042296 266 KFLLVLDDVWNE-----------NYNDWIDLSRPF---EA--GAPGSKIVVTTRNQAVVAI-M---G-TVPAYPLKELSD 324 (1446)
Q Consensus 266 ~~LlVlDdv~~~-----------~~~~~~~~~~~l---~~--~~~gs~iivTtR~~~v~~~-~---~-~~~~~~l~~L~~ 324 (1446)
+.+|++||++.- +...+..+...+ .. ...+..||.||...+.... + + -...+.++..+.
T Consensus 225 p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 225 PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCH
Confidence 789999999642 011111122111 11 1235678888876443221 1 1 124689999999
Q ss_pred HhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 325 EDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 325 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
++-.++|..++.+..- ...-.+ ..+++.+.|.-
T Consensus 305 ~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 305 EGRLEILKIHTRKMNL-ADDVDL----EELAELTEGAS 337 (389)
T ss_pred HHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCCC
Confidence 9999999987643221 111223 34666666653
No 160
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.25 E-value=0.079 Score=64.80 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=62.6
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEcc-ChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTR-NQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|++..-+...+..+...+..-...+.+|.+|. ...+...+ .....+++.+++.++..+.+.+.+...+.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 35666899999977665667777666655445666665554 33443332 23356889999999888888776643321
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
.. -.+.+..|++.++|.+-.+
T Consensus 197 -~i---d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 197 -KY---EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred -CC---CHHHHHHHHHHcCCCHHHH
Confidence 11 1355666888888877433
No 161
>PF14516 AAA_35: AAA-like domain
Probab=96.19 E-value=0.1 Score=59.84 Aligned_cols=178 Identities=12% Similarity=0.134 Sum_probs=100.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-----CCHHHHHHHHHHHh----cCCCCC------CCCCHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-----FDITRITKSILNSI----GTDQNV------DSLDFD 252 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~l----~~~~~~------~~~~~~ 252 (1446)
..|.|+-.+|||+|...+.+..+- ..+ .++++++..- .+..+.++.++..+ +..... ......
T Consensus 34 ~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 34 IRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred EEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 468999999999999998874322 233 3557776542 24555555555444 332210 011222
Q ss_pred HHHHHHHHHc---CCceEEEEEECCCCCCh-----hhHHHhcccccCCC-----CCcEEEEEccChH--HHHh-----hC
Q 042296 253 KLQVELKKQL---SQKKFLLVLDDVWNENY-----NDWIDLSRPFEAGA-----PGSKIVVTTRNQA--VVAI-----MG 312 (1446)
Q Consensus 253 ~~~~~l~~~l---~~~~~LlVlDdv~~~~~-----~~~~~~~~~l~~~~-----~gs~iivTtR~~~--v~~~-----~~ 312 (1446)
.....+.+.+ .+++.+|++|+|+.--. .++-...+.+.... ...-.+|...... .... +.
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFN 191 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFN 191 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcc
Confidence 3333344432 26899999999964311 12212111111100 1111222222111 1111 12
Q ss_pred CCCceecCCCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCC
Q 042296 313 TVPAYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK 375 (1446)
Q Consensus 313 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~ 375 (1446)
....++|++++.+|...|..++-.. .. ....++|...+||+|.-+..++..+..+
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2356899999999999999876421 11 1227889999999999999999999764
No 162
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.17 E-value=0.027 Score=67.08 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=71.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhcc-----CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDH-----FDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ 261 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 261 (1446)
.+-++|++|+|||++|+++++. .... +....|+.+... +++....+.. ......+....++.
T Consensus 218 GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~~--------eLl~kyvGet---e~~ir~iF~~Ar~~ 284 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKGP--------ELLNKYVGET---ERQIRLIFQRAREK 284 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccch--------hhcccccchH---HHHHHHHHHHHHHH
Confidence 3568999999999999999984 3222 223445554321 1111110000 00111222222222
Q ss_pred c-CCceEEEEEECCCCCC-------hhhH-----HHhcccccCC--CCCcEEEEEccChHHHHh-h-C--C-CCceecCC
Q 042296 262 L-SQKKFLLVLDDVWNEN-------YNDW-----IDLSRPFEAG--APGSKIVVTTRNQAVVAI-M-G--T-VPAYPLKE 321 (1446)
Q Consensus 262 l-~~~~~LlVlDdv~~~~-------~~~~-----~~~~~~l~~~--~~gs~iivTtR~~~v~~~-~-~--~-~~~~~l~~ 321 (1446)
. .+++++|+||+++.-- ..+. ..+...+... ..+..||.||...+.... + . - ...+++..
T Consensus 285 a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~ 364 (512)
T TIGR03689 285 ASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIER 364 (512)
T ss_pred hhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCC
Confidence 2 3578999999996420 0111 1222222211 134556667765543221 1 1 1 23589999
Q ss_pred CChHhHHHHHHhhc
Q 042296 322 LSDEDCLNVFTQHS 335 (1446)
Q Consensus 322 L~~~~~~~lf~~~a 335 (1446)
.+.++..++|..+.
T Consensus 365 Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 365 PDAEAAADIFSKYL 378 (512)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 163
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.0016 Score=68.20 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=38.5
Q ss_pred CCceeeccCccccccCc--cc-ccccccceeeccCccc--cccccccccCcccceeecccCCC
Q 042296 595 YLRYLNLSRTCIEILPD--SI-NKLYNLHTLLLEDCDR--LKKLCADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 595 ~Lr~L~L~~~~i~~lp~--~i-~~L~~L~~L~L~~~~~--~~~lp~~i~~L~~L~~L~l~~~~ 652 (1446)
.+..|.+.++.|...-+ .| ...++++.|||.+|.. ..++-.-+.+|+.|++|+++.|.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 44456666666553322 23 3567899999999842 12343445789999999999987
No 164
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.14 E-value=0.0039 Score=63.94 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=49.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.++|..|+|||.||..+.+.. +...+ .+.|+.+ .+++..+ ..... ....++... .+. +-=
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~l----~~~~~--~~~~~~~~~----~l~-~~d 110 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDEL----KQSRS--DGSYEELLK----RLK-RVD 110 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHH----HCCHC--CTTHCHHHH----HHH-TSS
T ss_pred EEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceeccc----ccccc--ccchhhhcC----ccc-ccc
Confidence 4689999999999999998742 22223 4566654 3344443 22211 112222222 222 235
Q ss_pred EEEEECCCCCChhhHHH--hcccccCC-CCCcEEEEEccCh
Q 042296 268 LLVLDDVWNENYNDWID--LSRPFEAG-APGSKIVVTTRNQ 305 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~~ 305 (1446)
||||||+-.....+|.. +...+... ..+ .+||||...
T Consensus 111 lLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 111 LLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp CEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred EecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 78899997665555543 11111111 123 588888753
No 165
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.13 E-value=0.064 Score=64.02 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=61.9
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++..........+...+.....+..+|++|.. ..+...+ .....+++..++.++..+.+.+.+-..+.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~- 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI- 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 56678999998655444455555555544446666666533 3333222 23357899999999988888776532221
Q ss_pred CCChhHHHHHHHHHHHhCCch-hHHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLP-LAAKTLG 369 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glP-lai~~~~ 369 (1446)
.. -.+.+..|++.++|.+ .|+..+-
T Consensus 199 ~i---~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 199 ET---SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 1356677889999865 4444443
No 166
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.10 E-value=0.022 Score=64.17 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=54.8
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC-Cc-eEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF-DL-KAWTCVSED-FDITRITKSILNSIGTDQNVDSLD----FDKLQVELKK 260 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F-~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~~~l~~ 260 (1446)
..|+|..|+|||||++.+++. +...- +. ++|+.+.+. .++.++.+.+...+......+... .......+.+
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 368999999999999998873 33222 33 467777655 467888888888776543211111 1111112222
Q ss_pred Hc--CCceEEEEEECC
Q 042296 261 QL--SQKKFLLVLDDV 274 (1446)
Q Consensus 261 ~l--~~~~~LlVlDdv 274 (1446)
++ ++++++||+|++
T Consensus 214 ~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 214 RLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHcCCCEEEEEeCc
Confidence 22 589999999998
No 167
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.03 E-value=0.032 Score=64.21 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=61.6
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceEE
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKFL 268 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~L 268 (1446)
-++|.+|+||||+|+.+++. .... ...++.+. .... ..++.+...... ..+.+.+-+
T Consensus 47 ll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~-~i~~~l~~~~~~----------------~~~~~~~~v 103 (316)
T PHA02544 47 LHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRID-FVRNRLTRFAST----------------VSLTGGGKV 103 (316)
T ss_pred EeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHH-HHHHHHHHHHHh----------------hcccCCCeE
Confidence 45899999999999999873 2211 23344433 1111 111111111000 001134557
Q ss_pred EEEECCCCCChh-hHHHhcccccCCCCCcEEEEEccChHH-HHhh-CCCCceecCCCChHhHHHHHHh
Q 042296 269 LVLDDVWNENYN-DWIDLSRPFEAGAPGSKIVVTTRNQAV-VAIM-GTVPAYPLKELSDEDCLNVFTQ 333 (1446)
Q Consensus 269 lVlDdv~~~~~~-~~~~~~~~l~~~~~gs~iivTtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~ 333 (1446)
||+||+...... ....+...+.....++++|+||..... ...+ .....+.++..+.++..+++..
T Consensus 104 liiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 104 IIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 899999654222 223333333333467789998865431 1111 1223566666677766655543
No 168
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.02 E-value=0.013 Score=61.29 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=17.5
Q ss_pred cceeEccCCchHHHHHHHHHccc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDA 209 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~ 209 (1446)
.+-|+|.+|+|||++.++++...
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999998843
No 169
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.12 Score=58.17 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=61.9
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|+++..+...-..+...+-.-..++.+|++|... .+...+ +-...+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 566789999997766555555555444333577777777653 333332 333568899999999988886531
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTLG 369 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~~ 369 (1446)
.. +..+..++..++|.|+......
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2235678999999998664443
No 170
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0032 Score=38.74 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=9.7
Q ss_pred CceeeccCccccccCcccc
Q 042296 596 LRYLNLSRTCIEILPDSIN 614 (1446)
Q Consensus 596 Lr~L~L~~~~i~~lp~~i~ 614 (1446)
|++|||++|+++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 171
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.93 E-value=0.042 Score=64.42 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=85.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+.|+|+-++||||+++.+... ..+. .+++...+......-+.+ ....+.+.-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d------------------~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD------------------LLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH------------------HHHHHHHhhccCC
Confidence 5579999999999999766652 2221 444443322111111111 1111111112278
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHH-----Hhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVV-----AIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
..|+||.|... .+|......+.+.++. +|+||+-+.... ... |-...+++.||+..|...+-...+
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----- 167 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----- 167 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----
Confidence 89999999665 8899988888887766 899998765433 222 334568999999988876543100
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHHHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAAKT 367 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai~~ 367 (1446)
....... .-+-.-..||.|-++..
T Consensus 168 --~~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 --EPSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred --chhHHHH-HHHHHHHhCCCcHHHhC
Confidence 0001111 22333456888877644
No 172
>PRK09183 transposase/IS protein; Provisional
Probab=95.92 E-value=0.014 Score=63.94 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=50.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+.|+|..|+|||+||..+++... ... ..+.++. ..++...+...... .. ....+++.+ .+.
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~-~~G-~~v~~~~------~~~l~~~l~~a~~~------~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAV-RAG-IKVRFTT------AADLLLQLSTAQRQ------GR---YKTTLQRGV-MAP 165 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH-HcC-CeEEEEe------HHHHHHHHHHHHHC------Cc---HHHHHHHHh-cCC
Confidence 356999999999999999976321 222 2333443 22333333222111 11 112222222 345
Q ss_pred EEEEEECCCCCChhhHH--HhcccccCC-CCCcEEEEEccCh
Q 042296 267 FLLVLDDVWNENYNDWI--DLSRPFEAG-APGSKIVVTTRNQ 305 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~--~~~~~l~~~-~~gs~iivTtR~~ 305 (1446)
-++|+||+.......+. .+...+... ..++ +||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 69999999654333332 222222111 1344 88888653
No 173
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.066 Score=66.14 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=61.6
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEE-EccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV-TTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++..-+......+...+..-...+.+|+ ||....+...+ .....+++..++.++....+...+-..+.
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi- 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI- 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-
Confidence 4556889999977655556666655544334556554 55545555433 23356888999998888777765432221
Q ss_pred CCChhHHHHHHHHHHHhCCch-hHHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLP-LAAKTLG 369 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glP-lai~~~~ 369 (1446)
... .+.+..|++.++|.. .|+..+-
T Consensus 197 ~i~---~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 197 SIS---DAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 111 345667888888865 4554443
No 174
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.91 E-value=0.014 Score=62.82 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=55.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
..++|.+|+|||+||.++++. ....-..++++++ .++...+-.... . .....+. +.+.+. +.=
T Consensus 102 ~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~-~---~~~~~~~----~l~~l~-~~d 164 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFS-N---SETSEEQ----LLNDLS-NVD 164 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHh-h---ccccHHH----HHHHhc-cCC
Confidence 468899999999999999984 3333345566643 444444433332 1 1112222 333344 344
Q ss_pred EEEEECCCCCChhhHHH--hcccccCC-CCCcEEEEEccC
Q 042296 268 LLVLDDVWNENYNDWID--LSRPFEAG-APGSKIVVTTRN 304 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~ 304 (1446)
+||+||+......+|.. +...+... ...-.+||||..
T Consensus 165 lLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 165 LLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 88889997665566654 22112111 123457788764
No 175
>PRK06921 hypothetical protein; Provisional
Probab=95.83 E-value=0.021 Score=62.84 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=26.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhcc-CCceEEEEe
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDH-FDLKAWTCV 223 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~-F~~~~wv~v 223 (1446)
.+.++|..|+|||+||.++++. +... -..+++++.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 3578999999999999999984 3333 344666664
No 176
>PRK06526 transposase; Provisional
Probab=95.81 E-value=0.015 Score=63.30 Aligned_cols=98 Identities=19% Similarity=0.144 Sum_probs=50.3
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.++|.+|+|||+||..+.... .+..+ .+.|+ +..++...+..... . ... ...+.+. .+.-
T Consensus 101 lll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~-----~-~~~---~~~l~~l--~~~d 161 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHH-----A-GRL---QAELVKL--GRYP 161 (254)
T ss_pred EEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHh-----c-CcH---HHHHHHh--ccCC
Confidence 4799999999999999998742 22222 23343 23344444433211 1 111 1223322 2345
Q ss_pred EEEEECCCCCChhhHH-H-hcccccC-CCCCcEEEEEccCh
Q 042296 268 LLVLDDVWNENYNDWI-D-LSRPFEA-GAPGSKIVVTTRNQ 305 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~-~-~~~~l~~-~~~gs~iivTtR~~ 305 (1446)
+||+||+.......|. . +...+.. ...+ .+|+||..+
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 8999999644222222 1 2222211 1124 488888764
No 177
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.77 E-value=0.17 Score=53.24 Aligned_cols=95 Identities=26% Similarity=0.359 Sum_probs=54.5
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+=+||..|.|||++++++.+. .... +.--|.|.+. +..+...+...++. +..||
T Consensus 55 vLL~G~rGtGKSSlVkall~~--y~~~--GLRlIev~k~--------------------~L~~l~~l~~~l~~--~~~kF 108 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNE--YADQ--GLRLIEVSKE--------------------DLGDLPELLDLLRD--RPYKF 108 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHH--Hhhc--CceEEEECHH--------------------HhccHHHHHHHHhc--CCCCE
Confidence 358999999999999999872 2211 1223344322 22344455555553 45799
Q ss_pred EEEEECCCCC-ChhhHHHhcccccCC----CCCcEEEEEccChHHH
Q 042296 268 LLVLDDVWNE-NYNDWIDLSRPFEAG----APGSKIVVTTRNQAVV 308 (1446)
Q Consensus 268 LlVlDdv~~~-~~~~~~~~~~~l~~~----~~gs~iivTtR~~~v~ 308 (1446)
+|.+||+.-+ .......++..+..+ ..+..|..||-.++..
T Consensus 109 Ilf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 109 ILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred EEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 9999998433 223455555444432 2344555666555443
No 178
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.74 E-value=0.014 Score=68.33 Aligned_cols=128 Identities=14% Similarity=0.162 Sum_probs=69.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|.+|+|||++|+.+++ +....| +.+... .+. ....+ .....+...+.....+.+.
T Consensus 220 VLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s----eL~----~k~~G------e~~~~vr~lF~~A~~~~P~ 278 (438)
T PTZ00361 220 VILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS----ELI----QKYLG------DGPKLVRELFRVAEENAPS 278 (438)
T ss_pred EEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----hhh----hhhcc------hHHHHHHHHHHHHHhCCCc
Confidence 56899999999999999998 333333 222211 111 11110 1111122222223345678
Q ss_pred EEEEECCCCC--------Ch--hh----HHHhcccccC--CCCCcEEEEEccChHHHHhh--C---CCCceecCCCChHh
Q 042296 268 LLVLDDVWNE--------NY--ND----WIDLSRPFEA--GAPGSKIVVTTRNQAVVAIM--G---TVPAYPLKELSDED 326 (1446)
Q Consensus 268 LlVlDdv~~~--------~~--~~----~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~--~---~~~~~~l~~L~~~~ 326 (1446)
+|+||+++.- .. .+ ...+...+.. ...+.+||+||...+..... . ....+.+...+.++
T Consensus 279 ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~ 358 (438)
T PTZ00361 279 IVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKT 358 (438)
T ss_pred EEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHH
Confidence 8999997421 00 00 1111111111 12466888888865544331 1 12468899999999
Q ss_pred HHHHHHhhcc
Q 042296 327 CLNVFTQHSL 336 (1446)
Q Consensus 327 ~~~lf~~~a~ 336 (1446)
..++|..++.
T Consensus 359 R~~Il~~~~~ 368 (438)
T PTZ00361 359 KRRIFEIHTS 368 (438)
T ss_pred HHHHHHHHHh
Confidence 9999987763
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.17 Score=56.88 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=62.6
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++=++|+|+++..+......+...+-.-..++.+|.+|.+. .+...+ +-...+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~ 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----I 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----C
Confidence 455688899998777666666666555444567777666654 344333 334678999999999998886531 0
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
. .+..+++.++|.|+.....
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 1 1345788999999876544
No 180
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.71 E-value=0.011 Score=58.74 Aligned_cols=99 Identities=24% Similarity=0.274 Sum_probs=69.6
Q ss_pred CceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccc-cccccceeeccCcccccccc--ccccCcccceee
Q 042296 570 LHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSIN-KLYNLHTLLLEDCDRLKKLC--ADMGNLIKLHHL 646 (1446)
Q Consensus 570 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L 646 (1446)
....-.+||++|.+..++ .|..+..|.+|.|++|+|+.+-..+. -+++|..|.|.+| ++.++- ..+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 345567888888887775 47788889999999999988865554 4567999999887 455553 225667788888
Q ss_pred cccCCCcccccCC----cccccccccccC
Q 042296 647 NNSTTNSLEEMPR----GIGKLTFLQTLC 671 (1446)
Q Consensus 647 ~l~~~~~~~~~p~----~i~~L~~L~~L~ 671 (1446)
.+-+|. ...-+. -+.++++|++|+
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEee
Confidence 887776 443332 256677777773
No 181
>PTZ00202 tuzin; Provisional
Probab=95.70 E-value=0.14 Score=58.21 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=80.5
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc---
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL--- 262 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--- 262 (1446)
+.+.|.|++|+|||||++.+..... +- ..+++.. +..++++.|+.++|.+.. ....++...|.+.+
T Consensus 287 rivvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~eElLr~LL~ALGV~p~---~~k~dLLrqIqeaLl~~ 355 (550)
T PTZ00202 287 RIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GTEDTLRSVVKALGVPNV---EACGDLLDFISEACRRA 355 (550)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CHHHHHHHHHHHcCCCCc---ccHHHHHHHHHHHHHHH
Confidence 3567899999999999999986322 11 2233333 679999999999997432 22233333333333
Q ss_pred --C-CceEEEEEECCCCCCh-hhHHHhcccccCCCCCcEEEEEccChHHHHhhC---CCCceecCCCChHhHHHHHHhh
Q 042296 263 --S-QKKFLLVLDDVWNENY-NDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMG---TVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 263 --~-~~~~LlVlDdv~~~~~-~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~---~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
. +++.+||+-=-.-.+. ..+.+. ..+.....-|+|++---.+.+..... --.-|-++.++.++|.+...+.
T Consensus 356 ~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 356 KKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 3 6777777754322211 112221 12334446678887655443221111 1135889999999998876654
No 182
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.68 E-value=0.029 Score=55.45 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=62.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC---CCHHHHHHHHH--H--HhcCCCCCCCCCHH-------
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED---FDITRITKSIL--N--SIGTDQNVDSLDFD------- 252 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~--~--~l~~~~~~~~~~~~------- 252 (1446)
.+-||+..|.||||+|...+- +...+=..+.+|..-+. .....+++.+- . +.+....-...+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~ 81 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAA 81 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHH
Confidence 456888899999999987775 33333223444443332 23333333320 0 00111000001111
Q ss_pred HHHHHHHHHcCC-ceEEEEEECCCCC---ChhhHHHhcccccCCCCCcEEEEEccCh
Q 042296 253 KLQVELKKQLSQ-KKFLLVLDDVWNE---NYNDWIDLSRPFEAGAPGSKIVVTTRNQ 305 (1446)
Q Consensus 253 ~~~~~l~~~l~~-~~~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 305 (1446)
+.....++.+.. +-=|+|||++-.. ...+.+++...+.....+..||+|.|+.
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122334444444 4459999998432 2344556666666666788999999985
No 183
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.67 E-value=0.021 Score=61.89 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=32.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRI 232 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 232 (1446)
.+.|+|.+|+|||++|.+++.. ....-..++|++.. .++..++
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999873 33344678999887 5665544
No 184
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.65 E-value=0.023 Score=63.74 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=59.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|..|+|||.||.++++.. ...-..+.++++. .++.++....... +..+ .+.. + .+-
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~~~~------~~~~---~l~~-l-~~~ 218 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSISDG------SVKE---KIDA-V-KEA 218 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHHhcC------cHHH---HHHH-h-cCC
Confidence 45689999999999999999843 2222345666653 4555555444311 1222 2222 2 245
Q ss_pred EEEEEECCCCCChhhHHH--hcccc-cCC-CCCcEEEEEccC
Q 042296 267 FLLVLDDVWNENYNDWID--LSRPF-EAG-APGSKIVVTTRN 304 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~--~~~~l-~~~-~~gs~iivTtR~ 304 (1446)
=||||||+-.+...+|.. +...+ ... ..+-.+|+||--
T Consensus 219 dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 219 PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 689999997766677753 44433 222 245578888864
No 185
>PRK07261 topology modulation protein; Provisional
Probab=95.65 E-value=0.02 Score=58.47 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=39.5
Q ss_pred ceeEccCCchHHHHHHHHHcccchh-ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQ-DHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
+.|+|++|+||||||+.+.....+. -+.|...|-... ...+.++....+.+.+.+.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------------ccCCHHHHHHHHHHHHhCCC
Confidence 5799999999999999997632111 234555552110 11234455566666666666
Q ss_pred EEEEEECCCC
Q 042296 267 FLLVLDDVWN 276 (1446)
Q Consensus 267 ~LlVlDdv~~ 276 (1446)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 57788743
No 186
>PRK04296 thymidine kinase; Provisional
Probab=95.64 E-value=0.018 Score=59.97 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=62.3
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHcCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV-DSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~ 266 (1446)
..|+|..|.||||+|..++. +...+-..++.+. ..++.+.....++.+++..... .....+++...+++ ..++.
T Consensus 5 ~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKI 79 (190)
T ss_pred EEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCC
Confidence 35789999999999988887 4433433344342 1122222233455666533221 12234555555555 33445
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA 306 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 306 (1446)
-+||+|.+.--+.++..++...+. ..|..||+|.++.+
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 589999985432222333333322 36889999998854
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.13 Score=58.94 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=82.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-+.|.+|+|||+||..++. ...|..+--++..+- +|.. +......+........++.--
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~s---EsaKc~~i~k~F~DAYkS~ls 600 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGLS---ESAKCAHIKKIFEDAYKSPLS 600 (744)
T ss_pred EEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCcc---HHHHHHHHHHHHHHhhcCcce
Confidence 34679999999999999986 456764333222111 0100 111122223333444567778
Q ss_pred EEEEECCCCCChhhHHHhcccc---------------cCCCCCcEEEEEccChHHHHhhCCC----CceecCCCCh-HhH
Q 042296 268 LLVLDDVWNENYNDWIDLSRPF---------------EAGAPGSKIVVTTRNQAVVAIMGTV----PAYPLKELSD-EDC 327 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l---------------~~~~~gs~iivTtR~~~v~~~~~~~----~~~~l~~L~~-~~~ 327 (1446)
.||+||+.. ..+|-.+...+ |+.++.--|+-||....|...|+-. ..|.++.++. ++.
T Consensus 601 iivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 601 IIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred EEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 999999944 35554443322 2222233355678788888887543 4688888887 677
Q ss_pred HHHHHhhccCCCCCCCChhHHHHHHHHHHHh
Q 042296 328 LNVFTQHSLGTRDFNMHKSLEEIGKKIVIKC 358 (1446)
Q Consensus 328 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c 358 (1446)
.+.++..- .-.+.+...++.+...+|
T Consensus 679 ~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 679 LEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 77776542 112233455566666655
No 188
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.62 E-value=0.18 Score=56.97 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=60.9
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEcc-ChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTR-NQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|++...+......+...+-.-. .+.+|++|. -..+...+ +-...+.+.+++.++..+.+.+......
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-
Confidence 3567789999997776666666655554322 334555544 33443333 3346799999999999999987642111
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHHHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAAKT 367 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai~~ 367 (1446)
. ......++...+|.|..+..
T Consensus 200 --~----~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 --L----NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred --c----hhHHHHHHHHcCCCHHHHHH
Confidence 0 11135688999999965544
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.61 E-value=0.13 Score=56.92 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=27.1
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHH
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRIT 233 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 233 (1446)
-+.|.+|+|||++|+.+++ .... ...+++.....+..+++
T Consensus 25 LL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 25 HLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred EEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 5789999999999999986 2222 23455666555554443
No 190
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.58 E-value=0.2 Score=61.68 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=59.1
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEE-EccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVV-TTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++-++|+|++..-....+..+...+..-.....+|+ ||....+...+ .....+++.+++.++..+.+...+-..+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 35666889999976655566666655544333444444 44444333322 23356888899998888888776633221
Q ss_pred CCCChhHHHHHHHHHHHhCCchhH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPla 364 (1446)
... .+.+..|++.++|.+..
T Consensus 197 -~i~---~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 197 -EYE---DEALRLIARAAEGGMRD 216 (559)
T ss_pred -CCC---HHHHHHHHHHcCCCHHH
Confidence 111 34566788888887643
No 191
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.54 E-value=0.011 Score=66.86 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=53.8
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
..+-++|..|+|||+||.++++.. ...-..++++++. +++..+...-. . ...+.... .+.+. +
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~------~l~~~l~~~~~-~---~~~~~~~~----~~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD------ELIEILREIRF-N---NDKELEEV----YDLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH------HHHHHHHHHHh-c---cchhHHHH----HHHhc-c
Confidence 345789999999999999999843 2222356666653 23333322111 1 11111111 22222 2
Q ss_pred eEEEEEECCCCCChhhHHH--hcccccCC-CCCcEEEEEccC
Q 042296 266 KFLLVLDDVWNENYNDWID--LSRPFEAG-APGSKIVVTTRN 304 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~ 304 (1446)
-=|||+||+-.....+|.. +...+... ..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2489999996554444432 22222211 135568888875
No 192
>PRK12377 putative replication protein; Provisional
Probab=95.50 E-value=0.021 Score=61.65 Aligned_cols=99 Identities=21% Similarity=0.138 Sum_probs=54.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.++|..|+|||+||.++++. .......++++++. +++..+-...... ..... +.+.+ .+-=
T Consensus 104 l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~-----~~~~~----~l~~l-~~~d 165 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG-----QSGEK----FLQEL-CKVD 165 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc-----chHHH----HHHHh-cCCC
Confidence 468999999999999999984 33444456776653 3444443332211 11122 22222 3566
Q ss_pred EEEEECCCCCChhhHHH--hcccccCC-CCCcEEEEEccC
Q 042296 268 LLVLDDVWNENYNDWID--LSRPFEAG-APGSKIVVTTRN 304 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~ 304 (1446)
|||+||+.......|.. +...+... ...--+||||-.
T Consensus 166 LLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 166 LLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999995544344543 22222211 122347888764
No 193
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.49 E-value=0.0075 Score=62.94 Aligned_cols=103 Identities=21% Similarity=0.206 Sum_probs=55.5
Q ss_pred CceeEEEEeCCCCccccCccccCCCCCceeeccCc--ccc-ccCcccccccccceeeccCcccccccccc---ccCcccc
Q 042296 570 LHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRT--CIE-ILPDSINKLYNLHTLLLEDCDRLKKLCAD---MGNLIKL 643 (1446)
Q Consensus 570 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~---i~~L~~L 643 (1446)
+..|..|+..+..++.+ ..+..|++|++|.++.| ++. .++-...++++|++|++++|. ++. +.+ ..++.+|
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcch
Confidence 33444444444444433 23445677777777777 443 444444555777777777763 333 222 4456666
Q ss_pred eeecccCCCcccccCC----cccccccccccCceEec
Q 042296 644 HHLNNSTTNSLEEMPR----GIGKLTFLQTLCNFAVG 676 (1446)
Q Consensus 644 ~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 676 (1446)
..|++.+|. ...+-. .+.-|++|..|+.+.+.
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 777777775 222221 13445666666555443
No 194
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.46 E-value=0.028 Score=61.50 Aligned_cols=88 Identities=23% Similarity=0.283 Sum_probs=51.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhcc----CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--------CCCCHH--
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDH----FDLKAWTCVSEDFDITRITKSILNSIGTDQNV--------DSLDFD-- 252 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--------~~~~~~-- 252 (1446)
.+.|+|.+|+||||+|.+++........ -..++|++....++..++. ++++..+..... ...+.+
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l 99 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSDHQ 99 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHHHH
Confidence 4579999999999999999753222221 3688999988877765443 344443321110 111222
Q ss_pred -HHHHHHHHHcC-C-ceEEEEEECCC
Q 042296 253 -KLQVELKKQLS-Q-KKFLLVLDDVW 275 (1446)
Q Consensus 253 -~~~~~l~~~l~-~-~~~LlVlDdv~ 275 (1446)
.....+...+. . +.-+||+|.+.
T Consensus 100 ~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 100 LQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 23334444443 3 56688888873
No 195
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.46 E-value=0.021 Score=62.47 Aligned_cols=87 Identities=24% Similarity=0.352 Sum_probs=52.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhcc----CCceEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCCCCHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDH----FDLKAWTCVSEDFDITRITKSILNSIGTDQN--------VDSLDFDKL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~ 254 (1446)
...|+|.+|+|||+||.+++-...+... =..++|++-...|+..++. +|+++.+.... ....+.+++
T Consensus 40 itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~l 118 (256)
T PF08423_consen 40 ITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEEL 118 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHHH
T ss_pred EEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHHH
Confidence 4579999999999999888743222221 2468999999999988875 46665432211 011233333
Q ss_pred HHHH---HHHc-CCceEEEEEECC
Q 042296 255 QVEL---KKQL-SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l---~~~l-~~~~~LlVlDdv 274 (1446)
...+ ...+ .++--|||+|.+
T Consensus 119 ~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 119 LELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHhhccccceEEEEecch
Confidence 3333 2223 345558888887
No 196
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=0.17 Score=57.41 Aligned_cols=149 Identities=18% Similarity=0.141 Sum_probs=85.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC--c
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ--K 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~ 265 (1446)
.-|.|-+|.|||.+...++.+......=..++++....-....+++..|...+..... ......+..+.+.+...+ .
T Consensus 178 lYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~-s~~~~~~~~~~~~~h~~q~k~ 256 (529)
T KOG2227|consen 178 LYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLV-SPGTGMQHLEKFEKHTKQSKF 256 (529)
T ss_pred eEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHhcccc
Confidence 3577999999999999999853221111234566655545678888888887732221 111224455555555543 3
Q ss_pred eEEEEEECCCCCChhhHHHhcccccC-CCCCcEEEEEccCh--HHHH----hh-----CCCCceecCCCChHhHHHHHHh
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEA-GAPGSKIVVTTRNQ--AVVA----IM-----GTVPAYPLKELSDEDCLNVFTQ 333 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~iivTtR~~--~v~~----~~-----~~~~~~~l~~L~~~~~~~lf~~ 333 (1446)
-+|+|+|..+.-....-..+...|.+ .-+++|+|+.---. +... .. .....+..++.+.++-.++|..
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~ 336 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQ 336 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHH
Confidence 68999999843211111122222222 23577766543211 1111 11 1235678899999999999998
Q ss_pred hccC
Q 042296 334 HSLG 337 (1446)
Q Consensus 334 ~a~~ 337 (1446)
+.-.
T Consensus 337 rl~~ 340 (529)
T KOG2227|consen 337 RLSE 340 (529)
T ss_pred HHhc
Confidence 8743
No 197
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.44 E-value=0.052 Score=63.33 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=77.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|.+|+|||++|+.+++. ....| +.+.. ..+ .....+ .....+...+.......+
T Consensus 181 gvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s~l----~~k~~g------e~~~~lr~lf~~A~~~~P 239 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----SEF----VQKYLG------EGPRMVRDVFRLARENAP 239 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----HHH----HHHhcc------hhHHHHHHHHHHHHhcCC
Confidence 4568999999999999999983 22222 22211 111 111111 111222222333335678
Q ss_pred EEEEEECCCCC-------C---hhh----HHHhcccccC--CCCCcEEEEEccChHHHHh-h-C---CCCceecCCCChH
Q 042296 267 FLLVLDDVWNE-------N---YND----WIDLSRPFEA--GAPGSKIVVTTRNQAVVAI-M-G---TVPAYPLKELSDE 325 (1446)
Q Consensus 267 ~LlVlDdv~~~-------~---~~~----~~~~~~~l~~--~~~gs~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~ 325 (1446)
.+|++|+++.- . ... +..+...+.. ...+..||+||...+.... + . -...+.+...+.+
T Consensus 240 ~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~ 319 (398)
T PTZ00454 240 SIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 319 (398)
T ss_pred eEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHH
Confidence 99999997531 0 001 1122222211 2246678888886543322 1 1 1245788888888
Q ss_pred hHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 326 DCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 326 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
+..++|..+..... ....-++. ++++...|..
T Consensus 320 ~R~~Il~~~~~~~~-l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 320 QKRLIFQTITSKMN-LSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred HHHHHHHHHHhcCC-CCcccCHH----HHHHHcCCCC
Confidence 88888876653221 12222333 4556665553
No 198
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.42 E-value=0.25 Score=55.66 Aligned_cols=157 Identities=10% Similarity=0.076 Sum_probs=88.7
Q ss_pred eeEccCCchHHHHHHHHHcccchhccC--------CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHF--------DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKK 260 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 260 (1446)
-+.|+.|+||+++|+.++...-..... +.+-++..+..+|+..+. .. ......++++.+ +.+
T Consensus 28 Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p~-~~~~I~id~iR~-l~~ 97 (325)
T PRK06871 28 LFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE--------PI-DNKDIGVDQVRE-INE 97 (325)
T ss_pred EeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------cc-cCCCCCHHHHHH-HHH
Confidence 378999999999999987532111111 011112222233322110 00 001123333332 222
Q ss_pred Hc-----CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHh
Q 042296 261 QL-----SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQ 333 (1446)
Q Consensus 261 ~l-----~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~ 333 (1446)
.+ .+++=++|+|+++..+......+...+-.-..++.+|++|.+. .+...+ +-...+.+.+++.++..+.+..
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred HHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 22 3566688899998876666666666555444567777777654 343332 3346799999999999988876
Q ss_pred hccCCCCCCCChhHHHHHHHHHHHhCCchhH
Q 042296 334 HSLGTRDFNMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~i~~~c~glPla 364 (1446)
... .. ...+...++.++|.|..
T Consensus 178 ~~~-----~~----~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 178 QSS-----AE----ISEILTALRINYGRPLL 199 (325)
T ss_pred Hhc-----cC----hHHHHHHHHHcCCCHHH
Confidence 531 11 11245677889999963
No 199
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.38 E-value=0.029 Score=60.00 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=33.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITK 234 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 234 (1446)
.+.|+|.+|+|||++|.+++.. ....-..++|++... ++..++.+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4579999999999999998863 333456789999876 66555443
No 200
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.37 E-value=0.037 Score=59.98 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=51.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC-CceEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCCCCH----HHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF-DLKAWTCVSEDF-DITRITKSILNSIGTDQ-------NVDSLDF----DKL 254 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~----~~~ 254 (1446)
..|+|..|+||||||+.+++ .++.+| +.++++-+++.. .+.++.+++...-.... ..++.-. ...
T Consensus 72 ~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~ 149 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALT 149 (274)
T ss_pred EEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 47999999999999999998 455556 455666676654 45566666554311110 0011101 112
Q ss_pred HHHHHHHc---CCceEEEEEECC
Q 042296 255 QVELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l---~~~~~LlVlDdv 274 (1446)
...+.+++ +++.+|+++||+
T Consensus 150 a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 150 GLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHhcCCeEEEEEeCh
Confidence 22344444 389999999998
No 201
>PRK10536 hypothetical protein; Provisional
Probab=95.34 E-value=0.05 Score=57.99 Aligned_cols=114 Identities=15% Similarity=0.094 Sum_probs=58.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEE----eCCC-----CCHHHH----HHHHHHHhcCCCCCCCCCHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTC----VSED-----FDITRI----TKSILNSIGTDQNVDSLDFDK 253 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~----vs~~-----~~~~~~----~~~i~~~l~~~~~~~~~~~~~ 253 (1446)
.+.+.|..|.|||+||.++..+.-..+.|+.++-+. +++. .+..+- ++.+.+.+..-. .....+.
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~--~~~~~~~ 153 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRL--GASFMQY 153 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHh--ChHHHHH
Confidence 457889999999999998876422233454333221 1111 122222 222222221100 0001111
Q ss_pred HHH--------HHHHHcCCceE---EEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh
Q 042296 254 LQV--------ELKKQLSQKKF---LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ 305 (1446)
Q Consensus 254 ~~~--------~l~~~l~~~~~---LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~ 305 (1446)
... .--.+++++.+ +||+|.+...+..+...+... .+.+|+||+|--..
T Consensus 154 ~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~~ 213 (262)
T PRK10536 154 CLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDIT 213 (262)
T ss_pred HHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCChh
Confidence 100 01234566655 999999987765555555443 35799999987543
No 202
>CHL00176 ftsH cell division protein; Validated
Probab=95.22 E-value=0.12 Score=64.01 Aligned_cols=149 Identities=14% Similarity=0.215 Sum_probs=81.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|++|+|||++|+.++... . +-|+.++.. ++.. ...+ .....+...+.+..+..+
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~f~~----~~~g------~~~~~vr~lF~~A~~~~P 276 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----EFVE----MFVG------VGAARVRDLFKKAKENSP 276 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----HHHH----Hhhh------hhHHHHHHHHHHHhcCCC
Confidence 35789999999999999998732 2 223333311 1111 1000 111223334445556788
Q ss_pred EEEEEECCCCCC----------hhhH----HHhcccccC--CCCCcEEEEEccChHHHHh-h-C---CCCceecCCCChH
Q 042296 267 FLLVLDDVWNEN----------YNDW----IDLSRPFEA--GAPGSKIVVTTRNQAVVAI-M-G---TVPAYPLKELSDE 325 (1446)
Q Consensus 267 ~LlVlDdv~~~~----------~~~~----~~~~~~l~~--~~~gs~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~ 325 (1446)
++|++||++.-. ...+ ..+...+.. ...+-.||.||...+.... + . -...+.+...+.+
T Consensus 277 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~ 356 (638)
T CHL00176 277 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356 (638)
T ss_pred cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHH
Confidence 999999995320 1112 222222211 2345677778776543322 1 1 1246788888888
Q ss_pred hHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCc
Q 042296 326 DCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGL 361 (1446)
Q Consensus 326 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~gl 361 (1446)
+-.++++.++.... .. .......+++.+.|.
T Consensus 357 ~R~~IL~~~l~~~~---~~--~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 357 GRLDILKVHARNKK---LS--PDVSLELIARRTPGF 387 (638)
T ss_pred HHHHHHHHHHhhcc---cc--hhHHHHHHHhcCCCC
Confidence 88888888763311 11 122345677777773
No 203
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.46 Score=56.32 Aligned_cols=87 Identities=16% Similarity=0.062 Sum_probs=44.9
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
+.+.|+|.+|+||||++..++.....+.....+..++... .....+.++.....++.... ...+...+...+++. .
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l-~- 427 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL-R- 427 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh-c-
Confidence 3568999999999999988876321111123455555422 11122223333333332222 223344444444433 3
Q ss_pred ceEEEEEECCC
Q 042296 265 KKFLLVLDDVW 275 (1446)
Q Consensus 265 ~~~LlVlDdv~ 275 (1446)
+.=+|++|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 34588888874
No 204
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.19 E-value=0.034 Score=62.13 Aligned_cols=82 Identities=21% Similarity=0.160 Sum_probs=54.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN----VDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|.+|+||||||.+++.. ....-..++||+....++.. .+++++.+.. ..+.+.++....+...+
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 4569999999999999998763 33444678899987776653 3444443211 13345566666665555
Q ss_pred C-CceEEEEEECCC
Q 042296 263 S-QKKFLLVLDDVW 275 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~ 275 (1446)
+ +..-+||+|.|-
T Consensus 130 ~s~~~~lIVIDSva 143 (325)
T cd00983 130 RSGAVDLIVVDSVA 143 (325)
T ss_pred hccCCCEEEEcchH
Confidence 4 456799999973
No 205
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.13 E-value=0.48 Score=49.76 Aligned_cols=178 Identities=17% Similarity=0.163 Sum_probs=98.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeC-CCCCHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHHHc-C
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVS-EDFDITRITKSILNSIGTDQNVDS-LDFDKLQVELKKQL-S 263 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~l~~~l-~ 263 (1446)
.+.|+|.-|.|||.+++...... . =+.++-|.+. ...+...+...|+..+..+..... ...++..+.+.+.. +
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~--~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASL--N--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhc--C--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 34688999999999999443210 0 1222223333 345677788888888876322111 11223333343333 5
Q ss_pred Cce-EEEEEECCCCCChhhHHHhcccccCCCCCc---EEEEEc--------cChHHHHhhC-CCCc-eecCCCChHhHHH
Q 042296 264 QKK-FLLVLDDVWNENYNDWIDLSRPFEAGAPGS---KIVVTT--------RNQAVVAIMG-TVPA-YPLKELSDEDCLN 329 (1446)
Q Consensus 264 ~~~-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs---~iivTt--------R~~~v~~~~~-~~~~-~~l~~L~~~~~~~ 329 (1446)
++| ..+++||..+......+.+.....-...++ +|+..- |-. +....+ -... |++.+++.++...
T Consensus 129 g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~-~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 129 GKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLP-VLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred CCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchH-HHHhhhheEEEEEecCCcChHHHHH
Confidence 677 999999997765555544433221111111 233222 111 111111 1123 8999999998887
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHh
Q 042296 330 VFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGG 370 (1446)
Q Consensus 330 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 370 (1446)
.+..+..+.....+ ---.+....|.....|.|.+|..++.
T Consensus 208 yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 208 YLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHH
Confidence 77766544321111 11134566788999999999987764
No 206
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.06 E-value=0.042 Score=61.41 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=53.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN----VDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|.+|+||||||.+++.. ....-..++|++....++.. .+++++.+.. ..+...++....+...+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 4569999999999999988763 33334567899887766653 3455543321 13345566666665555
Q ss_pred C-CceEEEEEECCC
Q 042296 263 S-QKKFLLVLDDVW 275 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~ 275 (1446)
+ +..-+||+|.|-
T Consensus 130 ~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 130 RSGAVDIIVVDSVA 143 (321)
T ss_pred hccCCcEEEEcchh
Confidence 4 456799999984
No 207
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.02 E-value=0.24 Score=56.78 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=47.7
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhh
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
+++=++|+|++...+......+...+..-..++.+|.+|.+.. +...+ +....+++.+++.++..+.+.+.
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 4556799999977665556666666655446777777776543 33322 33467999999999998888653
No 208
>PRK09354 recA recombinase A; Provisional
Probab=95.01 E-value=0.047 Score=61.47 Aligned_cols=82 Identities=21% Similarity=0.172 Sum_probs=55.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN----VDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|.+|+||||||.+++.. ....-..++||+....++.. .+++++.+.. ..+...++....+...+
T Consensus 62 IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 4569999999999999998763 33444678899988877753 3455544321 13344566666666555
Q ss_pred C-CceEEEEEECCC
Q 042296 263 S-QKKFLLVLDDVW 275 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~ 275 (1446)
+ ++.-+||+|-|-
T Consensus 135 ~s~~~~lIVIDSva 148 (349)
T PRK09354 135 RSGAVDLIVVDSVA 148 (349)
T ss_pred hcCCCCEEEEeChh
Confidence 4 456799999984
No 209
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.34 Score=55.04 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=61.2
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++=++|+|+++..+...+..+...+-.-.+++.+|.+|.+ ..+...+ +-...+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~------ 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG------ 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC------
Confidence 45568889999888777777776666554466766666555 4444332 333678999999999998887642
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
.. + ...++..++|.|.....+
T Consensus 205 ~~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 VA-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred CC-h-----HHHHHHHcCCCHHHHHHH
Confidence 01 1 122567789999755433
No 210
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.99 E-value=0.074 Score=57.74 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=52.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC------CceEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCCCCHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF------DLKAWTCVSEDFDITRITKSILNSIGTDQN--------VDSLDFD 252 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~ 252 (1446)
.+.|+|.+|+|||++|.+++... ...- ..++|++....++..++. ++....+.... ....+.+
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 45799999999999999987532 2222 467899988777765543 33333221110 0223455
Q ss_pred HHHHHHHHHcC----CceEEEEEECCC
Q 042296 253 KLQVELKKQLS----QKKFLLVLDDVW 275 (1446)
Q Consensus 253 ~~~~~l~~~l~----~~~~LlVlDdv~ 275 (1446)
++...+.+..+ .+.-+||+|.+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 55555555432 345589999974
No 211
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.067 Score=58.28 Aligned_cols=86 Identities=22% Similarity=0.154 Sum_probs=54.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHH-hcCCCCCCCCCHHHH---HHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNS-IGTDQNVDSLDFDKL---QVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~---~~~l~~~l 262 (1446)
.+.|+|..|+||||+|.+++- .....-..++|++.-..+++.++. ++... +..-....+.+.++. ++.+....
T Consensus 62 ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~ 138 (279)
T COG0468 62 ITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLARSG 138 (279)
T ss_pred EEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHHHhc
Confidence 567999999999999999876 344445589999999999987653 33333 221111133343333 33333333
Q ss_pred CCceEEEEEECCC
Q 042296 263 SQKKFLLVLDDVW 275 (1446)
Q Consensus 263 ~~~~~LlVlDdv~ 275 (1446)
..+--|||+|.|-
T Consensus 139 ~~~i~LvVVDSva 151 (279)
T COG0468 139 AEKIDLLVVDSVA 151 (279)
T ss_pred cCCCCEEEEecCc
Confidence 3446799999983
No 212
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.25 Score=54.29 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=89.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC-Cc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS-QK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~ 265 (1446)
.+-+||++|.|||-||++|++ +....| +.|... ++.+..-+. -..+++.+.+.-+ ..
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS--------ElVqKYiGE-------GaRlVRelF~lAreka 244 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS--------ELVQKYIGE-------GARLVRELFELAREKA 244 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH--------HHHHHHhcc-------chHHHHHHHHHHhhcC
Confidence 456899999999999999999 444433 333321 233222221 1234444554444 46
Q ss_pred eEEEEEECCCCC-----------C---hhhHHHhcccccCC--CCCcEEEEEccChHHHHhh--C---CCCceecCCCCh
Q 042296 266 KFLLVLDDVWNE-----------N---YNDWIDLSRPFEAG--APGSKIVVTTRNQAVVAIM--G---TVPAYPLKELSD 324 (1446)
Q Consensus 266 ~~LlVlDdv~~~-----------~---~~~~~~~~~~l~~~--~~gs~iivTtR~~~v~~~~--~---~~~~~~l~~L~~ 324 (1446)
+..|.+|.++.- + +...-++...+..+ ...-|||..|...++.... . -.+.+++..-+.
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCH
Confidence 888889988531 0 01122233333332 2357999988766654332 2 235678875555
Q ss_pred HhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch----hHHHHHHhhhc
Q 042296 325 EDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP----LAAKTLGGLLR 373 (1446)
Q Consensus 325 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP----lai~~~~~~L~ 373 (1446)
+.-.+.|.-++-.. .....-+++. +++.+.|.- -|+.+=|++++
T Consensus 325 ~gR~~Il~IHtrkM-~l~~dvd~e~----la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 325 EGRAEILKIHTRKM-NLADDVDLEL----LARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred HHHHHHHHHHhhhc-cCccCcCHHH----HHHhcCCCchHHHHHHHHHHhHHH
Confidence 55567787776332 2233334444 666677665 44555566554
No 213
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.95 E-value=0.14 Score=58.48 Aligned_cols=160 Identities=14% Similarity=0.068 Sum_probs=89.0
Q ss_pred eeEccCCchHHHHHHHHHcccchhccC--------CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHF--------DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKK 260 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 260 (1446)
-+.|..|+||+|+|..++...-....- ..+-++..+..+|+..+. .........++++.+....
T Consensus 28 Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 28 LIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--------PEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred eeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------cccccccCCHHHHHHHHHH
Confidence 378999999999999887532111110 111122222333322110 0000011234443332222
Q ss_pred H----cCCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhh
Q 042296 261 Q----LSQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 261 ~----l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
. ..+++=++|+|+++..+......+...+-.-..++.+|.+|.+. .+...+ +-...+.+.+++.+++.+.+...
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred HhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHc
Confidence 1 13567789999998776656666655554444567777666654 344332 33457899999999998887653
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhCCchhHH
Q 042296 335 SLGTRDFNMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
. + .+ .+.+..+++.++|.|...
T Consensus 180 ~-~-----~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 180 V-T-----MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred c-C-----CC---HHHHHHHHHHcCCCHHHH
Confidence 2 1 11 233667899999999644
No 214
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.87 E-value=0.19 Score=50.75 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=32.6
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA 306 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 306 (1446)
+++=++|+||++..+...+..+...+-.-..++++|++|++.+
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 4566899999988877778888777766667899999888754
No 215
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.014 Score=35.94 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=18.6
Q ss_pred eeEEEEeCCCCccccCccccCC
Q 042296 572 RLKVFSLCGYQISELPNSVGDL 593 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~~i~~L 593 (1446)
+|++|||++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4899999999999999887754
No 216
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.0028 Score=65.72 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=33.3
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccc--cccCcccceeecccCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCA--DMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~ 651 (1446)
+-|++-||.++.+. -..+|+.|++|.||-|+|+.| +.+..+++|+.|.|+.| .+..+-+ -+.+|++|+.|-|..|
T Consensus 22 kKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 22 KKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccC
Confidence 33444444444331 123444455555555555444 22444555555555544 2332211 1344555555555544
Q ss_pred C
Q 042296 652 N 652 (1446)
Q Consensus 652 ~ 652 (1446)
.
T Consensus 99 P 99 (388)
T KOG2123|consen 99 P 99 (388)
T ss_pred C
Confidence 3
No 217
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.75 E-value=0.068 Score=55.24 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=26.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEE
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTC 222 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 222 (1446)
.+.+.|+.|+||||+|+.++. +....+...+++.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 567899999999999999997 4555566666553
No 218
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.74 E-value=0.2 Score=61.32 Aligned_cols=149 Identities=11% Similarity=0.132 Sum_probs=77.5
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|++|+|||++|+.+++.. ... ++.++. .++. ....+ .....+...+.......+.
T Consensus 91 iLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~~~----~~~~g------~~~~~l~~~f~~a~~~~p~ 149 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SDFV----EMFVG------VGASRVRDLFEQAKKNAPC 149 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HHHH----HHHhc------ccHHHHHHHHHHHHhcCCC
Confidence 4689999999999999998732 212 233321 1111 11111 1122333334444456678
Q ss_pred EEEEECCCCCC----------hhhHHHh----ccccc--CCCCCcEEEEEccChHHHH-hh----CCCCceecCCCChHh
Q 042296 268 LLVLDDVWNEN----------YNDWIDL----SRPFE--AGAPGSKIVVTTRNQAVVA-IM----GTVPAYPLKELSDED 326 (1446)
Q Consensus 268 LlVlDdv~~~~----------~~~~~~~----~~~l~--~~~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~ 326 (1446)
+|++|+++.-. ...+... ...+. ....+-.||.||...+... .+ .-...+.+...+.++
T Consensus 150 Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 150 IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred EEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 99999984420 0112111 11111 1223456777776543221 11 123468888888888
Q ss_pred HHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 327 CLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 327 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
-.++|..+..... .... .....+++.+.|..
T Consensus 230 R~~il~~~l~~~~-~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 230 REEILKVHAKNKK-LAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred HHHHHHHHHhcCC-CCcc----hhHHHHHHhCCCCC
Confidence 8888887663221 1111 12346777777743
No 219
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.73 E-value=0.0023 Score=64.49 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=75.1
Q ss_pred hhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceee
Q 042296 567 LLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHL 646 (1446)
Q Consensus 567 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 646 (1446)
+..++..++||++.|++..+-..|+.++.|..|+++.|.|..+|..++.+..++++++..| .....|.++++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4467788999999999888877888889999999999999999999999999999998876 588899999999999999
Q ss_pred cccCCC
Q 042296 647 NNSTTN 652 (1446)
Q Consensus 647 ~l~~~~ 652 (1446)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 988876
No 220
>PRK04132 replication factor C small subunit; Provisional
Probab=94.63 E-value=0.55 Score=59.64 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=92.7
Q ss_pred cCCchHHHHHHHHHcccchhccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceEEEEE
Q 042296 193 MGGLGKTTLAQLVYNDARLQDHF-DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKFLLVL 271 (1446)
Q Consensus 193 ~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVl 271 (1446)
+.++||||+|..++++. ..+.+ ..++-+++++..++.. .++++..+..... . -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~-~--------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKP-I--------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC-c--------------CCCCCEEEEE
Confidence 66899999999999842 12223 2355677776544443 3333333221111 0 0124579999
Q ss_pred ECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCCCCChhHHH
Q 042296 272 DDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEE 349 (1446)
Q Consensus 272 Ddv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~ 349 (1446)
|+++..+......+...+......+++|.+|.+. .+.... .....+.+.+++.++-.+.+...+...+ ...+ .+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~---~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELT---EE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCC---HH
Confidence 9998877667777766665444566777666553 333332 2236799999999998888776653222 1111 34
Q ss_pred HHHHHHHHhCCchhHH
Q 042296 350 IGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 350 ~~~~i~~~c~glPlai 365 (1446)
....|++.++|.+-.+
T Consensus 713 ~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 713 GLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHcCCCHHHH
Confidence 6778999999987433
No 221
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.49 E-value=1.8 Score=51.32 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=47.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
.+.++|++|+||||++..++........-..++.|+....- ...+.++...+.++.+.. ...+..++...+.+. . .
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~-~-~ 299 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL-R-D 299 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-C-C
Confidence 56889999999999888887632201223456667653211 112233334444444332 233445555555543 3 3
Q ss_pred eEEEEEECC
Q 042296 266 KFLLVLDDV 274 (1446)
Q Consensus 266 ~~LlVlDdv 274 (1446)
.=+||+|..
T Consensus 300 ~DlVlIDt~ 308 (424)
T PRK05703 300 CDVILIDTA 308 (424)
T ss_pred CCEEEEeCC
Confidence 568888976
No 222
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.49 E-value=0.065 Score=60.31 Aligned_cols=87 Identities=23% Similarity=0.277 Sum_probs=53.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchh----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--------CCCCHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ----DHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV--------DSLDFDKL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--------~~~~~~~~ 254 (1446)
...|+|.+|+||||+|.+++-..... ..=..++||+....|+..++. +++++++.+... ...+.++.
T Consensus 98 iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e~~ 176 (313)
T TIGR02238 98 ITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSEHQ 176 (313)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHHHH
Confidence 45699999999999998876422221 112478999999989888875 456666543210 11233333
Q ss_pred H---HHHHHHcC-CceEEEEEECC
Q 042296 255 Q---VELKKQLS-QKKFLLVLDDV 274 (1446)
Q Consensus 255 ~---~~l~~~l~-~~~~LlVlDdv 274 (1446)
. ..+...+. ++--|||+|.+
T Consensus 177 ~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 177 MELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHhhccCCCEEEEEcc
Confidence 3 33333332 34557888887
No 223
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.0056 Score=63.59 Aligned_cols=80 Identities=29% Similarity=0.387 Sum_probs=61.7
Q ss_pred hh-cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCc--ccccccccceeeccCcccccccccc-----cc
Q 042296 567 LL-KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD--SINKLYNLHTLLLEDCDRLKKLCAD-----MG 638 (1446)
Q Consensus 567 ~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~-----i~ 638 (1446)
++ +++.|.||.|+-|.|+.+- .+..++.|+.|.|+.|.|..+-+ .+.+|++|++|-|..|.-.+.-+.. +.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 44 9999999999999999883 47889999999999999987743 5689999999999988654444322 33
Q ss_pred Ccccceeec
Q 042296 639 NLIKLHHLN 647 (1446)
Q Consensus 639 ~L~~L~~L~ 647 (1446)
.|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 455555553
No 224
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.36 E-value=0.08 Score=57.01 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=29.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFD 228 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 228 (1446)
.+.|+|.+|+||||+|.+++.. ....=..++|++....++
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4579999999999999999863 222334677887765554
No 225
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.34 E-value=0.083 Score=54.76 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=55.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEe----CCCC-----CHHH----HHHHHHHHhcCCCCCCCCCHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCV----SEDF-----DITR----ITKSILNSIGTDQNVDSLDFDK 253 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~-----~~~~----~~~~i~~~l~~~~~~~~~~~~~ 253 (1446)
.+.+.|.+|.|||.||.+.+-+.-..+.|+.++++.- .+.. +..+ ....+.+.+..-. .....+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~--~~~~~~~ 98 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF--GKEKLEE 98 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS---TTCHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh--ChHhHHH
Confidence 4578899999999999888865444577887777542 1111 1111 1112222222110 1112222
Q ss_pred HHHH------HHHHcCCc---eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh
Q 042296 254 LQVE------LKKQLSQK---KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ 305 (1446)
Q Consensus 254 ~~~~------l~~~l~~~---~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~ 305 (1446)
+.+. --.+++|+ ...||+|.+.+....++..+.... +.|||||++--..
T Consensus 99 ~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 99 LIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp HHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 2211 01234554 469999999887777777765543 4799999987543
No 226
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.32 E-value=0.024 Score=54.31 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=18.6
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|++|+||||+|+.+..
T Consensus 2 I~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987
No 227
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.32 E-value=0.21 Score=64.11 Aligned_cols=134 Identities=15% Similarity=0.223 Sum_probs=66.6
Q ss_pred cceeEccCCchHHHHHHHHHcccc---hhccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDAR---LQDHF-DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
-+.++|.+|+|||++|+.+++... +...+ +..+|. + +...+ .... . ...+.++....+.+.+
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a~~--~---~~g~~e~~l~~i~~~~ 270 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LAGT--K---YRGDFEERLKAVVSEI 270 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hhhc--c---ccchHHHHHHHHHHHH
Confidence 346899999999999999987321 11111 334442 1 11111 1100 0 1112233333333333
Q ss_pred -CCceEEEEEECCCCCC--------hhhHHHhcccccCCCCCcEEEEEccChHHHHh------h-CCCCceecCCCChHh
Q 042296 263 -SQKKFLLVLDDVWNEN--------YNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAI------M-GTVPAYPLKELSDED 326 (1446)
Q Consensus 263 -~~~~~LlVlDdv~~~~--------~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~------~-~~~~~~~l~~L~~~~ 326 (1446)
+.++.+|++|++..-. ..+...+..+....+ .-++|-+|...+.... + .-...+.++.++.++
T Consensus 271 ~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~ 349 (731)
T TIGR02639 271 EKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEE 349 (731)
T ss_pred hccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHH
Confidence 3467899999985210 011222222222221 2244444433222111 1 123568999999999
Q ss_pred HHHHHHhhc
Q 042296 327 CLNVFTQHS 335 (1446)
Q Consensus 327 ~~~lf~~~a 335 (1446)
..+++....
T Consensus 350 ~~~il~~~~ 358 (731)
T TIGR02639 350 TVKILKGLK 358 (731)
T ss_pred HHHHHHHHH
Confidence 999998654
No 228
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.24 E-value=0.021 Score=56.37 Aligned_cols=86 Identities=23% Similarity=0.118 Sum_probs=46.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|.+|+|||++|+.+++. ... ...-+.++...+..++....--. .... ......+...++ +..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~---~~~~~~l~~a~~-----~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQF---EFKDGPLVRAMR-----KGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTTT---CEEE-CCCTTHH-----EEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-cccc---cccccccccccc-----cee
Confidence 358899999999999999872 211 23336777777777665433222 0000 000000111111 789
Q ss_pred EEEEECCCCCChhhHHHhcc
Q 042296 268 LLVLDDVWNENYNDWIDLSR 287 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~ 287 (1446)
++|||++......-+..+..
T Consensus 68 il~lDEin~a~~~v~~~L~~ 87 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLS 87 (139)
T ss_dssp EEEESSCGG--HHHHHTTHH
T ss_pred EEEECCcccCCHHHHHHHHH
Confidence 99999997655444444433
No 229
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.24 E-value=0.037 Score=55.23 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=63.8
Q ss_pred hhhcCceeEEEEeCCCCccccCccccC-CCCCceeeccCccccccCc--ccccccccceeeccCccccccccc----ccc
Q 042296 566 RLLKLHRLKVFSLCGYQISELPNSVGD-LRYLRYLNLSRTCIEILPD--SINKLYNLHTLLLEDCDRLKKLCA----DMG 638 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~----~i~ 638 (1446)
.+..++.|..|.|++|+|+.+-..+.. +++|..|.|.+|+|.++-+ -+..++.|++|.+-+|. +..-+. -+.
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLY 137 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEE
Confidence 344788899999999999988545544 4569999999999886632 35678899999988874 444332 267
Q ss_pred CcccceeecccCCC
Q 042296 639 NLIKLHHLNNSTTN 652 (1446)
Q Consensus 639 ~L~~L~~L~l~~~~ 652 (1446)
++++|++||..+-.
T Consensus 138 klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcceEeehhhhh
Confidence 88999999987643
No 230
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.22 E-value=0.11 Score=57.86 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=52.2
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHH
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQ 261 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~ 261 (1446)
+.+.|+|..|+||||||.++.. ...+.-..++||+....++. ..++++|.+... .+...++....+.+.
T Consensus 54 ~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~l 126 (322)
T PF00154_consen 54 RIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQL 126 (322)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred ceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHHH
Confidence 3568999999999999999887 34444567899999877766 334555544321 234455555666665
Q ss_pred cC-CceEEEEEECCCC
Q 042296 262 LS-QKKFLLVLDDVWN 276 (1446)
Q Consensus 262 l~-~~~~LlVlDdv~~ 276 (1446)
++ +..-++|+|-|-.
T Consensus 127 irsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 127 IRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHTTSESEEEEE-CTT
T ss_pred hhcccccEEEEecCcc
Confidence 54 4556899999843
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.19 E-value=0.11 Score=56.83 Aligned_cols=78 Identities=24% Similarity=0.207 Sum_probs=45.8
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.++|.+|+|||.||.++.+.. .+.=-.+.++++ .++..++....... .....+...+. +-=
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l--~~~g~sv~f~~~------~el~~~Lk~~~~~~-----~~~~~l~~~l~-----~~d 169 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNEL--LKAGISVLFITA------PDLLSKLKAAFDEG-----RLEEKLLRELK-----KVD 169 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEEH------HHHHHHHHHHHhcC-----chHHHHHHHhh-----cCC
Confidence 4689999999999999999953 332234555554 45555555544321 11122222122 234
Q ss_pred EEEEECCCCCChhhHH
Q 042296 268 LLVLDDVWNENYNDWI 283 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~ 283 (1446)
||||||+-......|.
T Consensus 170 lLIiDDlG~~~~~~~~ 185 (254)
T COG1484 170 LLIIDDIGYEPFSQEE 185 (254)
T ss_pred EEEEecccCccCCHHH
Confidence 8999999665445554
No 232
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.19 E-value=0.29 Score=63.35 Aligned_cols=131 Identities=13% Similarity=0.181 Sum_probs=66.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhcc------CCceEE-EEeCCCCCHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDH------FDLKAW-TCVSEDFDITRITKSILNSIGTDQNVDSLDF-DKLQVEL 258 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~------F~~~~w-v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~l 258 (1446)
-+.++|.+|+||||+|+.+++. +... .+..+| +..+. +..... ...+. +.+...+
T Consensus 210 n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~--------------l~ag~~-~~ge~e~~lk~ii 272 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL--------------LQAGAS-VKGEFENRLKSVI 272 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh--------------hhcccc-cchHHHHHHHHHH
Confidence 3468999999999999999873 3211 123333 22221 000000 01111 1222222
Q ss_pred HHHc-CCceEEEEEECCCCCC-------hhhHHHhcccccCCCCCcEEEEEccChHHHHhh-------CCCCceecCCCC
Q 042296 259 KKQL-SQKKFLLVLDDVWNEN-------YNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM-------GTVPAYPLKELS 323 (1446)
Q Consensus 259 ~~~l-~~~~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~-------~~~~~~~l~~L~ 323 (1446)
.+.- .+++.+|++|++..-. ..+-..+..+....+ .-++|-||...+....+ .-...+.+++++
T Consensus 273 ~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps 351 (852)
T TIGR03345 273 DEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPD 351 (852)
T ss_pred HHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCC
Confidence 2221 2468999999984321 122222333322221 24556555543221111 223579999999
Q ss_pred hHhHHHHHHhhc
Q 042296 324 DEDCLNVFTQHS 335 (1446)
Q Consensus 324 ~~~~~~lf~~~a 335 (1446)
.++..+++....
T Consensus 352 ~~~~~~iL~~~~ 363 (852)
T TIGR03345 352 EETAIRMLRGLA 363 (852)
T ss_pred HHHHHHHHHHHH
Confidence 999999975443
No 233
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.23 Score=56.31 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=48.5
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFD--ITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
+.+.++|.+|+||||++..++.. ....=..+..++.. .+. ..+-++...+.++.+.. ...+...+...+...-.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHHHh
Confidence 46789999999999999999863 22222234555543 222 23333444444443322 23455666655544422
Q ss_pred C-ceEEEEEECCCC
Q 042296 264 Q-KKFLLVLDDVWN 276 (1446)
Q Consensus 264 ~-~~~LlVlDdv~~ 276 (1446)
. +.=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234777887643
No 234
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.13 E-value=0.089 Score=60.14 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=38.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC----CceEEEEeCCCCCHHHHHHHHHHHhc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF----DLKAWTCVSEDFDITRITKSILNSIG 241 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~ 241 (1446)
.+.|+|.+|+|||++|.+++........+ ..++||+....++..++. ++++.++
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 45699999999999999987532211111 478999999888887764 4445544
No 235
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.08 E-value=5.9 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
...++|++|+|||++|+.+++.
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999973
No 236
>PRK13695 putative NTPase; Provisional
Probab=93.98 E-value=0.045 Score=56.43 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.6
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|.|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.97 E-value=0.14 Score=53.50 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=49.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCC--CCCCHHHHH-HHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQNV--DSLDFDKLQ-VELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~-~~l~~~l 262 (1446)
++.++|+.|+||||.+.+++.. .+.+=..+..++... .....+.++..++.++.+... ...+..+.. +.+++.-
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5678999999999988777763 333344567777642 234566777888888755321 122333333 3333332
Q ss_pred CCceEEEEEECC
Q 042296 263 SQKKFLLVLDDV 274 (1446)
Q Consensus 263 ~~~~~LlVlDdv 274 (1446)
.++.=+|++|=.
T Consensus 81 ~~~~D~vlIDT~ 92 (196)
T PF00448_consen 81 KKGYDLVLIDTA 92 (196)
T ss_dssp HTTSSEEEEEE-
T ss_pred hcCCCEEEEecC
Confidence 233347777765
No 238
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.96 E-value=0.17 Score=62.33 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
...++|++|+||||+++.++..
T Consensus 112 illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999873
No 239
>PHA00729 NTP-binding motif containing protein
Probab=93.94 E-value=0.064 Score=56.21 Aligned_cols=21 Identities=43% Similarity=0.521 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|.+|+||||||..+.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999987
No 240
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.92 E-value=3.9 Score=52.60 Aligned_cols=136 Identities=19% Similarity=0.186 Sum_probs=65.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+.++|++|+||||+|+.++. .....|- -+..+...+...+...-....+ .....+.+.+... ....
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~--~l~~~~~---~i~~~~~~d~~~i~g~~~~~~g-------~~~G~~~~~l~~~-~~~~ 417 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAK--ATGRKYV---RMALGGVRDEAEIRGHRRTYIG-------SMPGKLIQKMAKV-GVKN 417 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HhCCCEE---EEEcCCCCCHHHhccchhccCC-------CCCcHHHHHHHhc-CCCC
Confidence 457899999999999999986 2332221 1333333333222111100011 1112233334332 2233
Q ss_pred EEEEEECCCCCChhh----HHHhcccccC---------------CCCCcEEEEEccChHHHHhh-CCCCceecCCCChHh
Q 042296 267 FLLVLDDVWNENYND----WIDLSRPFEA---------------GAPGSKIVVTTRNQAVVAIM-GTVPAYPLKELSDED 326 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~----~~~~~~~l~~---------------~~~gs~iivTtR~~~v~~~~-~~~~~~~l~~L~~~~ 326 (1446)
-+|+||.++...... ...+...+.. .-.+.-+|.|+....+...+ +-..++.+.+++.+|
T Consensus 418 ~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~ee 497 (784)
T PRK10787 418 PLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDE 497 (784)
T ss_pred CEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHH
Confidence 478899986543211 1222222211 11233444455433222221 223567788888887
Q ss_pred HHHHHHhhc
Q 042296 327 CLNVFTQHS 335 (1446)
Q Consensus 327 ~~~lf~~~a 335 (1446)
-.++..++.
T Consensus 498 k~~Ia~~~L 506 (784)
T PRK10787 498 KLNIAKRHL 506 (784)
T ss_pred HHHHHHHhh
Confidence 777776554
No 241
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.92 E-value=0.42 Score=54.27 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=42.2
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhh
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
+++-++|+|++..-+...-..+...+.....++.+|++|.+.+ +...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344455688866554444444444433234566777777654 33332 22367889999999998888653
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.88 E-value=0.22 Score=50.68 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=28.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFD 228 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 228 (1446)
+.|+|.+|+||||+|..+... ....-..++|+.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 468999999999999999873 233335677877765543
No 243
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.05 Score=52.28 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.1
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|.|++|+||||+++.+.+.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHH
Confidence 579999999999999999973
No 244
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=1.3 Score=53.38 Aligned_cols=77 Identities=25% Similarity=0.262 Sum_probs=45.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
..+.+|++|+|||.+|+.++. ...+.| +-++|+.-.|+.+|- |....-...-+..+++.+++. +-..
T Consensus 440 IlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk-------GHRRTYVGAMPGkiIq~LK~v-~t~N 506 (906)
T KOG2004|consen 440 ILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK-------GHRRTYVGAMPGKIIQCLKKV-KTEN 506 (906)
T ss_pred EEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc-------ccceeeeccCChHHHHHHHhh-CCCC
Confidence 457889999999999999997 333333 235666655655541 111111222234455555443 4456
Q ss_pred EEEEEECCCC
Q 042296 267 FLLVLDDVWN 276 (1446)
Q Consensus 267 ~LlVlDdv~~ 276 (1446)
=|+.+|.|+.
T Consensus 507 PliLiDEvDK 516 (906)
T KOG2004|consen 507 PLILIDEVDK 516 (906)
T ss_pred ceEEeehhhh
Confidence 6888999854
No 245
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.57 E-value=0.23 Score=56.32 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=40.1
Q ss_pred cceeEccCCchHHHHHHHHHcccch----hccCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARL----QDHFDLKAWTCVSEDFDITRITKSILNSIGTD 243 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 243 (1446)
...|+|.+|+|||+|+.+++-.... ...-..++||+....|+..++.+ ++++++.+
T Consensus 128 ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 128 ITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred EEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4469999999999999888642222 11124789999999999888754 56666543
No 246
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.56 E-value=0.2 Score=55.93 Aligned_cols=85 Identities=19% Similarity=0.147 Sum_probs=46.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
.+.++|.+|+||||++..++.....+..-..+..|+..... .....+....+.++.+.. ...+..++...+... .+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~-~~- 272 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL-RD- 272 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc-cC-
Confidence 56899999999999998888632222111245566654211 123333444444444332 334455555555443 33
Q ss_pred eEEEEEECC
Q 042296 266 KFLLVLDDV 274 (1446)
Q Consensus 266 ~~LlVlDdv 274 (1446)
.=+|++|..
T Consensus 273 ~d~vliDt~ 281 (282)
T TIGR03499 273 KDLILIDTA 281 (282)
T ss_pred CCEEEEeCC
Confidence 357777753
No 247
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.55 E-value=0.2 Score=56.97 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=39.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc----cCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD----HFDLKAWTCVSEDFDITRITKSILNSIGT 242 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 242 (1446)
.+.|+|.+|+|||++|..++-...... .-..++|++....|+..++ .+|++.++.
T Consensus 125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 456899999999999988874322111 1136899999999988876 456666654
No 248
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.49 E-value=0.21 Score=57.93 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=63.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhc-------------------cCCceEEEEeCCCCC---HHHHHHHHHHHhcCCCC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQD-------------------HFDLKAWTCVSEDFD---ITRITKSILNSIGTDQN 245 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~---~~~~~~~i~~~l~~~~~ 245 (1446)
.-++|+.|+||||+|..+++..-... ..+.+..+..+.... ..+..+++.+.......
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~ 106 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL 106 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC
Confidence 35889999999999999887421111 112233333333322 22223333322221110
Q ss_pred CCCCCHHHHHHHHHHHcCCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecCC
Q 042296 246 VDSLDFDKLQVELKKQLSQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLKE 321 (1446)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~ 321 (1446)
.++.-++|+|+++..+.+.-..+...+......+.+|++|... .+...+ .....+.+.+
T Consensus 107 -----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 107 -----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred -----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 3567899999997765544555555554455678888888743 222222 1223455655
No 249
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.47 E-value=0.16 Score=58.54 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.++|.+|+||||+|..++.
T Consensus 225 vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999986
No 250
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.42 E-value=0.087 Score=55.42 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=57.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHH-HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDIT-RITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
.+.|+|..|+||||++..+... ........++.- .++.... .-...+..+.. ...+.......++..+...
T Consensus 3 lilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~-----vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIEFVHESKRSLINQRE-----VGLDTLSFENALKAALRQD 74 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCccccccCccceeeecc-----cCCCccCHHHHHHHHhcCC
Confidence 3578999999999999887762 333333444432 2221110 00001111100 1112233456677777777
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHH
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVV 308 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 308 (1446)
.=.|++|.+.+. +.+....... ..|-.|+.|+-..++.
T Consensus 75 pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 779999999654 3333332222 2455677777655443
No 251
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=1.1 Score=46.34 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=68.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|++|.|||-||++|+++. .+-|+.||.. + +.+..-+.. ..-..++.-.-+ ..-+
T Consensus 183 GvlLygppgtGktLlaraVahht-------~c~firvsgs----e----lvqk~igeg---srmvrelfvmar---ehap 241 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----E----LVQKYIGEG---SRMVRELFVMAR---EHAP 241 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----H----HHHHHhhhh---HHHHHHHHHHHH---hcCC
Confidence 45689999999999999999843 3456777643 1 222111110 001111111112 2456
Q ss_pred EEEEEECCCCCC-----------h---hhHHHhcccccCC--CCCcEEEEEccChHHHHhh--C---CCCceecCCCChH
Q 042296 267 FLLVLDDVWNEN-----------Y---NDWIDLSRPFEAG--APGSKIVVTTRNQAVVAIM--G---TVPAYPLKELSDE 325 (1446)
Q Consensus 267 ~LlVlDdv~~~~-----------~---~~~~~~~~~l~~~--~~gs~iivTtR~~~v~~~~--~---~~~~~~l~~L~~~ 325 (1446)
..|..|.+++.. . ...-++...+..+ .++-|||..|..-++.... . ..+.++..+-+++
T Consensus 242 siifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ 321 (404)
T KOG0728|consen 242 SIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 321 (404)
T ss_pred ceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHH
Confidence 677778775420 0 0111222223222 3466888777654444321 2 2345777777777
Q ss_pred hHHHHHHhhc
Q 042296 326 DCLNVFTQHS 335 (1446)
Q Consensus 326 ~~~~lf~~~a 335 (1446)
.-.++++-+.
T Consensus 322 ar~~ilkihs 331 (404)
T KOG0728|consen 322 ARLDILKIHS 331 (404)
T ss_pred HHHHHHHHhh
Confidence 7777777655
No 252
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=0.8 Score=53.86 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=46.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|++|+|||.||++++++. . +-++.++.+ +|+..+.+ ..++.+.+...+..+.-+
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel--~-----vPf~~isAp--------eivSGvSG------ESEkkiRelF~~A~~~aP 283 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGEL--G-----VPFLSISAP--------EIVSGVSG------ESEKKIRELFDQAKSNAP 283 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhc--C-----CceEeecch--------hhhcccCc------ccHHHHHHHHHHHhccCC
Confidence 44688999999999999999843 2 334455433 33333322 334555555566667789
Q ss_pred EEEEEECCCC
Q 042296 267 FLLVLDDVWN 276 (1446)
Q Consensus 267 ~LlVlDdv~~ 276 (1446)
+++++|+++-
T Consensus 284 civFiDeIDA 293 (802)
T KOG0733|consen 284 CIVFIDEIDA 293 (802)
T ss_pred eEEEeecccc
Confidence 9999999854
No 253
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.27 E-value=0.21 Score=57.21 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=49.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC--CceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF--DLKAWTCVSE-DFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
.+.++|+.|+||||++.++... ....+ ..+..++... .....+-++...+.++.+.. ...+..++...+. .+.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALA-ELR 214 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHH-Hhc
Confidence 5579999999999999999873 22233 3455555332 12345556666666665443 2233333333333 344
Q ss_pred CceEEEEEECCCC
Q 042296 264 QKKFLLVLDDVWN 276 (1446)
Q Consensus 264 ~~~~LlVlDdv~~ 276 (1446)
++ -+|++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566898743
No 254
>PRK08233 hypothetical protein; Provisional
Probab=93.26 E-value=0.17 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.5
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|.|.+|+||||+|+.++..
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5688999999999999999863
No 255
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.13 Score=61.18 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=41.9
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF--DITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
-+.|..|+|||+||+++++... +++.-.+.+|+.+.-. ....+++. +.....+.+...+
T Consensus 435 ll~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~------------------l~~vfse~~~~~P 495 (952)
T KOG0735|consen 435 LLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF------------------LNNVFSEALWYAP 495 (952)
T ss_pred EEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH------------------HHHHHHHHHhhCC
Confidence 4679999999999999998433 3343445555554321 12222221 1223334456788
Q ss_pred EEEEEECCC
Q 042296 267 FLLVLDDVW 275 (1446)
Q Consensus 267 ~LlVlDdv~ 275 (1446)
-+|||||++
T Consensus 496 SiIvLDdld 504 (952)
T KOG0735|consen 496 SIIVLDDLD 504 (952)
T ss_pred cEEEEcchh
Confidence 999999984
No 256
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.16 E-value=0.15 Score=57.73 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=37.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc----cCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD----HFDLKAWTCVSEDFDITRITKSILNSIGT 242 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 242 (1446)
.+.|+|.+|+||||+|..++....... .-..++|++....++..++ .++++.++.
T Consensus 98 i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 98 ITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 457999999999999998875222111 1235799998888887764 445555543
No 257
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.15 E-value=0.14 Score=52.98 Aligned_cols=74 Identities=22% Similarity=0.142 Sum_probs=41.4
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHH--HHHHhcCC-CCCCCCCHHHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKS--ILNSIGTD-QNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~--i~~~l~~~-~~~~~~~~~~~~~~l~~~l 262 (1446)
..++|.|.+|+||||+|+.++. .++.. ++.+-...+.-.-... ..+..... ..+...+.+-+.+.+...+
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~--~~~~~-----~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSE--QLGVE-----KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHH--HhCcC-----cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 4678999999999999999987 33333 2222111111111111 11111111 1225567777788888888
Q ss_pred CCce
Q 042296 263 SQKK 266 (1446)
Q Consensus 263 ~~~~ 266 (1446)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8877
No 258
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.07 E-value=0.2 Score=51.04 Aligned_cols=117 Identities=21% Similarity=0.113 Sum_probs=62.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC---CCHHHHHHHH--HH--HhcCCCCCCCCC-------HH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED---FDITRITKSI--LN--SIGTDQNVDSLD-------FD 252 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i--~~--~l~~~~~~~~~~-------~~ 252 (1446)
.+.|+|..|-||||.|..+.- +.-.+=-.+..|..-+. ......++.+ +. +.+....-...+ ..
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred eEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 457999999999999987765 32222223333433322 2333333321 00 011110000011 11
Q ss_pred HHHHHHHHHcCC-ceEEEEEECCCCC---ChhhHHHhcccccCCCCCcEEEEEccCh
Q 042296 253 KLQVELKKQLSQ-KKFLLVLDDVWNE---NYNDWIDLSRPFEAGAPGSKIVVTTRNQ 305 (1446)
Q Consensus 253 ~~~~~l~~~l~~-~~~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 305 (1446)
+.....++.+.+ +-=++|||.+-.. ...+.+++...+.....+..||+|-|+.
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 223344555544 4559999998332 2244566666666666788999999975
No 259
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.05 E-value=0.055 Score=30.75 Aligned_cols=16 Identities=44% Similarity=0.603 Sum_probs=6.1
Q ss_pred CCceeeccCccccccC
Q 042296 595 YLRYLNLSRTCIEILP 610 (1446)
Q Consensus 595 ~Lr~L~L~~~~i~~lp 610 (1446)
+||.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 260
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.01 E-value=0.27 Score=49.27 Aligned_cols=117 Identities=18% Similarity=0.080 Sum_probs=60.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEe---CCCCCHHHHHHHHH---HHhcCCC--CC-CC-CC---HHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCV---SEDFDITRITKSIL---NSIGTDQ--NV-DS-LD---FDK 253 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~i~---~~l~~~~--~~-~~-~~---~~~ 253 (1446)
.+-|++..|.||||.|..++- +...+=..++.+.. .........++... .+.+... .. +. .+ ..+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred EEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 457888899999999987775 32222222333322 21223333333320 0011110 00 00 11 122
Q ss_pred HHHHHHHHcCC-ceEEEEEECCCCC---ChhhHHHhcccccCCCCCcEEEEEccCh
Q 042296 254 LQVELKKQLSQ-KKFLLVLDDVWNE---NYNDWIDLSRPFEAGAPGSKIVVTTRNQ 305 (1446)
Q Consensus 254 ~~~~l~~~l~~-~~~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 305 (1446)
.....++.+.. +-=|+|||.+-.. ...+.+++...+.....+..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 33344555544 4459999998321 2234456666666666788999999985
No 261
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=92.96 E-value=1.9 Score=42.23 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhccC-ChHHHHHHHHHHHHHHhhHhh
Q 042296 4 IGEAVLSASIELLVNKLASEGLRFFARQEQILADLMKWKKMLMKINVVLDDADERQRT-DKSVKLWLGELQNLAYDVEDL 82 (1446)
Q Consensus 4 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~lr~~~yd~eD~ 82 (1446)
+|+.+..|++|.+++.+...+..........+.-+++|...++.|.-++++.+..... +..-+.-++++.+..-+++++
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 3555555666666666555545445555567888999999999999999998765422 333366788888888889999
Q ss_pred HHHHH
Q 042296 83 LDEFE 87 (1446)
Q Consensus 83 ld~~~ 87 (1446)
++.|.
T Consensus 82 V~k~s 86 (147)
T PF05659_consen 82 VEKCS 86 (147)
T ss_pred HHHhc
Confidence 98763
No 262
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.92 E-value=0.19 Score=57.35 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=38.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD----HFDLKAWTCVSEDFDITRITKSILNSIG 241 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 241 (1446)
.+.|+|.+|+||||+|.+++....... .=..++||+....++..++. ++++.++
T Consensus 97 i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 97 ITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 457999999999999999876422210 11378999999888887754 4455544
No 263
>PRK06762 hypothetical protein; Provisional
Probab=92.90 E-value=1 Score=45.88 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 4 li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999986
No 264
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.87 E-value=0.071 Score=55.88 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=47.1
Q ss_pred cCCCCCceeeccCccccccCcccccccccceeeccCc--cccccccccccCcccceeecccCCC
Q 042296 591 GDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDC--DRLKKLCADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 591 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~~~ 652 (1446)
-.+..|++|++.+..++.+ ..+-.|++|++|.++.| .....++.-..++++|++|++++|.
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3456777777777777665 34667899999999998 4455566556677999999999997
No 265
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.83 E-value=0.19 Score=60.12 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=48.0
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceEE
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKFL 268 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~L 268 (1446)
-++|++|+||||||.-|+++. .| .++=|.+|+.-....+-..|...+....... . .+++.-
T Consensus 330 LL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-a-------------dsrP~C 390 (877)
T KOG1969|consen 330 LLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-A-------------DSRPVC 390 (877)
T ss_pred EeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc-c-------------CCCcce
Confidence 478999999999999998742 23 3666788877777666666655543322100 0 257788
Q ss_pred EEEECCCCCC
Q 042296 269 LVLDDVWNEN 278 (1446)
Q Consensus 269 lVlDdv~~~~ 278 (1446)
+|+|.++-..
T Consensus 391 LViDEIDGa~ 400 (877)
T KOG1969|consen 391 LVIDEIDGAP 400 (877)
T ss_pred EEEecccCCc
Confidence 9999987654
No 266
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.81 E-value=0.34 Score=58.08 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=67.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|++|+|||.+|+.+++. ....| +-+..+ . +.... .......+.+.++..-...+
T Consensus 261 GILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~----l~~~~------vGese~~l~~~f~~A~~~~P 319 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------K----LFGGI------VGESESRMRQMIRIAEALSP 319 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------H----hcccc------cChHHHHHHHHHHHHHhcCC
Confidence 4568999999999999999883 22222 112211 1 11111 11112222233332224578
Q ss_pred EEEEEECCCCCCh-------hh-----HHHhcccccCCCCCcEEEEEccChHHH-Hhh---C-CCCceecCCCChHhHHH
Q 042296 267 FLLVLDDVWNENY-------ND-----WIDLSRPFEAGAPGSKIVVTTRNQAVV-AIM---G-TVPAYPLKELSDEDCLN 329 (1446)
Q Consensus 267 ~LlVlDdv~~~~~-------~~-----~~~~~~~l~~~~~gs~iivTtR~~~v~-~~~---~-~~~~~~l~~L~~~~~~~ 329 (1446)
++|++|+++..-. .. ...+...+.....+--||.||...+-. ..+ + -...+.+..-+.++-.+
T Consensus 320 ~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~ 399 (489)
T CHL00195 320 CILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREK 399 (489)
T ss_pred cEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHH
Confidence 9999999853200 00 011111122223344566777655321 111 1 23467888888888888
Q ss_pred HHHhhccC
Q 042296 330 VFTQHSLG 337 (1446)
Q Consensus 330 lf~~~a~~ 337 (1446)
+|..+...
T Consensus 400 Il~~~l~~ 407 (489)
T CHL00195 400 IFKIHLQK 407 (489)
T ss_pred HHHHHHhh
Confidence 98877643
No 267
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.81 E-value=0.88 Score=49.18 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=80.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
-+.|+|+.|+|||+-++.+++.. ....-+..+..+....++..+......... ....+....+...+++..
T Consensus 96 l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~---~~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 96 LVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATD---GTINDLTERLMIRLRDTV 166 (297)
T ss_pred eEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHccCc
Confidence 34799999999999999998731 223335667777777777777766655432 344556666677778888
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhCCCCceecCCCChHhHHHHHHhhccCC
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMGTVPAYPLKELSDEDCLNVFTQHSLGT 338 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 338 (1446)
-+|+.|....-....++.+.......+-| -++|-+ .+.+..-.-+.++...+|.+..++.
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~Gi~-~vLvG~-----------prL~~~l~~~~~~~~rl~srv~v~~ 226 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKTGIG-VVLVGM-----------PRLFKVLRRPEDELSRLYSRVRVGK 226 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhhCce-EEEecC-----------hHHHhccccchHHHHHHHHHhhhHh
Confidence 89999998766555666655444332222 122211 1111222234566677777776654
No 268
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.80 E-value=0.65 Score=59.98 Aligned_cols=149 Identities=14% Similarity=0.158 Sum_probs=77.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|++|+|||++|+++++. ....| +.+... +++....+ .....+.......-+..+.
T Consensus 490 iLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~--------~l~~~~vG------ese~~i~~~f~~A~~~~p~ 548 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP--------EILSKWVG------ESEKAIREIFRKARQAAPA 548 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH--------HHhhcccC------cHHHHHHHHHHHHHhcCCE
Confidence 468899999999999999983 33222 333211 12221111 1122222333333346679
Q ss_pred EEEEECCCCC--------Chh----hHHHhcccccC--CCCCcEEEEEccChHHHHhh-----CCCCceecCCCChHhHH
Q 042296 268 LLVLDDVWNE--------NYN----DWIDLSRPFEA--GAPGSKIVVTTRNQAVVAIM-----GTVPAYPLKELSDEDCL 328 (1446)
Q Consensus 268 LlVlDdv~~~--------~~~----~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~ 328 (1446)
+|++|+++.- ... ...++...+.. ...+.-||.||...+..... .-...+.+...+.++-.
T Consensus 549 iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~ 628 (733)
T TIGR01243 549 IIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARK 628 (733)
T ss_pred EEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHH
Confidence 9999998531 000 01112222221 12345677777665543221 12346788888888888
Q ss_pred HHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 329 NVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 329 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
++|..+.-+.. .....++ ..+++.+.|.-
T Consensus 629 ~i~~~~~~~~~-~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 629 EIFKIHTRSMP-LAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred HHHHHHhcCCC-CCccCCH----HHHHHHcCCCC
Confidence 88876653221 1122223 44667777654
No 269
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.70 E-value=0.3 Score=52.19 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=70.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-----CCCHHHHHHHHHHHhcCCCCC-----CCCCHHHH-H
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-----DFDITRITKSILNSIGTDQNV-----DSLDFDKL-Q 255 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~-~ 255 (1446)
..+++|-.|+||||+|+.+.. ...--.+.+++.-.+ .....+-..++++.++..... ..-+-.+. .
T Consensus 41 ~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 468999999999999999986 222222333333211 223344566667776644321 11122222 3
Q ss_pred HHHHHHcCCceEEEEEECCCCC-ChhhHHHhcccccC--CCCCcEEEEEccChHHHHhhCC
Q 042296 256 VELKKQLSQKKFLLVLDDVWNE-NYNDWIDLSRPFEA--GAPGSKIVVTTRNQAVVAIMGT 313 (1446)
Q Consensus 256 ~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~~~ 313 (1446)
-.+.+.+.-++-+||.|.--+. +...-.++...+.+ ...|-..+..|-+-.|+..++.
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3467777889999999996332 11111222222221 2246678888888888777654
No 270
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.69 E-value=0.31 Score=53.06 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=50.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-------------------CC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN-------------------VD 247 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------------~~ 247 (1446)
.+.|+|.+|+|||++|.++.... .+ +=..++|++..+. ..++.+++ .+++.... ..
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccccC
Confidence 34688999999999999986521 22 2346788888654 34444443 33331110 01
Q ss_pred CCCHHHHHHHHHHHcCC-ceEEEEEECCC
Q 042296 248 SLDFDKLQVELKKQLSQ-KKFLLVLDDVW 275 (1446)
Q Consensus 248 ~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 275 (1446)
..+.+.+...+.+.++. +.-++|+|.+-
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 12335566666666653 55689999974
No 271
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=3 Score=50.68 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=73.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
..+++|++|+|||.||+.++. ...+.|- -++++.--|..++- |....--..-+..+++.+++. +.+.
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIR-------GHRRTYIGamPGrIiQ~mkka-~~~N 418 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIR-------GHRRTYIGAMPGKIIQGMKKA-GVKN 418 (782)
T ss_pred EEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhc-------cccccccccCChHHHHHHHHh-CCcC
Confidence 457899999999999999997 4454442 23444433443331 111111112233444444443 4567
Q ss_pred EEEEEECCCCCCh----hhHHHhcccccCCC-------------CCcEE-EEEccCh-H-HH-HhhCCCCceecCCCChH
Q 042296 267 FLLVLDDVWNENY----NDWIDLSRPFEAGA-------------PGSKI-VVTTRNQ-A-VV-AIMGTVPAYPLKELSDE 325 (1446)
Q Consensus 267 ~LlVlDdv~~~~~----~~~~~~~~~l~~~~-------------~gs~i-ivTtR~~-~-v~-~~~~~~~~~~l~~L~~~ 325 (1446)
=+++||.++.... +.-.++...+.+.. -=|+| -|+|-+. + +. ..+..+.++++.+.+++
T Consensus 419 Pv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~ 498 (782)
T COG0466 419 PVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTED 498 (782)
T ss_pred CeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChH
Confidence 7899999865321 11112222221110 01444 4555442 1 21 22344578999999999
Q ss_pred hHHHHHHhhc
Q 042296 326 DCLNVFTQHS 335 (1446)
Q Consensus 326 ~~~~lf~~~a 335 (1446)
|-.+.-+++.
T Consensus 499 EKl~IAk~~L 508 (782)
T COG0466 499 EKLEIAKRHL 508 (782)
T ss_pred HHHHHHHHhc
Confidence 9888877765
No 272
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.64 E-value=4.4 Score=48.35 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=45.2
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
.++.++|..|+||||++.+++.....+..-..+..|.... .....+-++...+.++.... ...+..+....+ ..+++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~-~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH-AVKDAADLRLAL-SELRN 334 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee-ccCCchhHHHHH-HhccC
Confidence 3678999999999999999886322121122355555432 12233444555555554332 122222222222 23344
Q ss_pred ceEEEEEECCC
Q 042296 265 KKFLLVLDDVW 275 (1446)
Q Consensus 265 ~~~LlVlDdv~ 275 (1446)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 466777753
No 273
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.62 E-value=0.15 Score=52.06 Aligned_cols=21 Identities=33% Similarity=0.456 Sum_probs=18.8
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|.|.+|+||||+|+.+.+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999874
No 274
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.60 E-value=0.33 Score=51.02 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=43.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc-cCC---ceEEEEeCCCCCHHHHHHHHHHHhcCC---CCCCCCCHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD-HFD---LKAWTCVSEDFDITRITKSILNSIGTD---QNVDSLDFDKLQVELK 259 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~~l~ 259 (1446)
+++|.|.+|+||||+|+.+... ... .+. ....+....-.+....... -...... ......+.+.+.+.++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 3689999999999999999873 322 222 1233333222222222111 1111111 1124567788888887
Q ss_pred HHcCCceEEEE
Q 042296 260 KQLSQKKFLLV 270 (1446)
Q Consensus 260 ~~l~~~~~LlV 270 (1446)
...+++.+-+-
T Consensus 78 ~L~~g~~i~~p 88 (194)
T PF00485_consen 78 ALKNGGSIEIP 88 (194)
T ss_dssp HHHTTSCEEEE
T ss_pred HHhCCCccccc
Confidence 77677665443
No 275
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.54 E-value=0.79 Score=47.45 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=61.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEE---eCCCCCHHHHHH------HHHHHhcCCCC----CCCCCH-H
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTC---VSEDFDITRITK------SILNSIGTDQN----VDSLDF-D 252 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~------~i~~~l~~~~~----~~~~~~-~ 252 (1446)
.++|.|..|.|||||++.++... ....+.+++. +.+ .+...... ++++.++.... ....+. +
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 56899999999999999998632 2233444432 221 12222111 13444443211 011122 2
Q ss_pred HHHHHHHHHcCCceEEEEEECCCCC-ChhhHHHhcccccCC-CC-CcEEEEEccChHHHHh
Q 042296 253 KLQVELKKQLSQKKFLLVLDDVWNE-NYNDWIDLSRPFEAG-AP-GSKIVVTTRNQAVVAI 310 (1446)
Q Consensus 253 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~-gs~iivTtR~~~v~~~ 310 (1446)
...-.+.+.+-..+-++++|+--.. +......+...+... .. |..||++|.+.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 2223345556667889999996332 112223333333221 12 6788899888765543
No 276
>PTZ00301 uridine kinase; Provisional
Probab=92.53 E-value=0.16 Score=53.41 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|.+|+||||+|+.+..
T Consensus 5 iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 578999999999999998876
No 277
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.47 E-value=0.63 Score=47.55 Aligned_cols=113 Identities=21% Similarity=0.241 Sum_probs=58.1
Q ss_pred cceeEccCCchHHHHHHHHHccc---chhcc---CC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCC---CCC--CCHH-
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDA---RLQDH---FD--LKAWTCVSEDFDITRITKSILNSIGTDQN---VDS--LDFD- 252 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~---~~~~~---F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~--~~~~- 252 (1446)
.++|+|..|+|||||.+.+..+. ++... |. .+.|+ .+ .+.++.++.... ... .+..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHHH
Confidence 56899999999999999886321 11111 11 12232 21 355666654321 111 1112
Q ss_pred HHHHHHHHHcCCc--eEEEEEECCCCC-ChhhHHHhcccccC-CCCCcEEEEEccChHHHH
Q 042296 253 KLQVELKKQLSQK--KFLLVLDDVWNE-NYNDWIDLSRPFEA-GAPGSKIVVTTRNQAVVA 309 (1446)
Q Consensus 253 ~~~~~l~~~l~~~--~~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~iivTtR~~~v~~ 309 (1446)
...-.+...+-.+ .=++++|.--.. +......+...+.. ...|..||++|.+.+...
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2222344445555 678888986332 11222223332222 124778999998877654
No 278
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.45 E-value=0.62 Score=46.03 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=53.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.++|+|..|.|||||++.+.... ....+.+|+.-.. .++.-. +-..-+...-.+...+-.++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHhcCC
Confidence 45799999999999999998632 1223334432100 000000 00111222233455555677
Q ss_pred EEEEEECCCCC-ChhhHHHhcccccCCCCCcEEEEEccChHHHHh
Q 042296 267 FLLVLDDVWNE-NYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAI 310 (1446)
Q Consensus 267 ~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 310 (1446)
-++++|+--.. +......+...+... +..||++|.+.+.+..
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 78899986332 222233333333322 3468888887665544
No 279
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.45 E-value=0.68 Score=50.55 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.6
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..|+|++|+|||+||..++.
T Consensus 4 ~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 35889999999999998875
No 280
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=92.42 E-value=0.15 Score=57.01 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.4
Q ss_pred ccceeEccCCchHHHHHHHHHcc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
..+.|||++|.|||.+|+.+++.
T Consensus 149 lgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999984
No 281
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.34 E-value=0.21 Score=54.79 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=16.7
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|+|.+|+||||+|+++...
T Consensus 4 iil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHH
Confidence 568999999999999999873
No 282
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.34 E-value=0.079 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.6
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
|.|.|..|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999873
No 283
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.73 Score=55.00 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=21.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF 215 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F 215 (1446)
.|-.||++|.|||++|+++++ ..+..|
T Consensus 470 GVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 470 GVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred eEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 455789999999999999998 344444
No 284
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.31 E-value=0.14 Score=54.75 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=18.4
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|++|+||||+|+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999976
No 285
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.30 E-value=0.33 Score=63.44 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=56.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV-DSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~ 265 (1446)
..-++|..|+|||++|+.+... ....-...+.++.+.-.+... +..-++.+... .......+...++. ..
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~----~~~l~g~~~g~~g~~~~g~l~~~v~~---~p 667 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS----VARLIGAPPGYVGYEEGGQLTEAVRR---KP 667 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch----HHHhcCCCCCccCcccccHHHHHHHc---CC
Confidence 3458899999999999999862 111112233344443222111 11112222110 11111223333332 23
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCC-----------CCCcEEEEEccC
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAG-----------APGSKIVVTTRN 304 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivTtR~ 304 (1446)
..+|+||++...+...+..+...+..+ -..+-||+||..
T Consensus 668 ~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 668 YSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 348999999888777777776665433 133447777764
No 286
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=92.28 E-value=1.4 Score=53.01 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=66.0
Q ss_pred ceeEccCCchHHHHHHHHHcccc---h---hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDAR---L---QDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ 261 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~---~---~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 261 (1446)
.-|.|.+|.|||..+..|.+... . -..|+ .+.|..-+-....++...|..++.+... ......+.+..+
T Consensus 425 mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~----~~~~al~~L~~~ 499 (767)
T KOG1514|consen 425 MYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERV----TWDAALEALNFR 499 (767)
T ss_pred EEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCcc----cHHHHHHHHHHh
Confidence 35779999999999999987321 1 12343 3445555556789999999999976543 233334444444
Q ss_pred c-----CCceEEEEEECCCC---CChhhHHHhcccccC-CCCCcEEEEEc
Q 042296 262 L-----SQKKFLLVLDDVWN---ENYNDWIDLSRPFEA-GAPGSKIVVTT 302 (1446)
Q Consensus 262 l-----~~~~~LlVlDdv~~---~~~~~~~~~~~~l~~-~~~gs~iivTt 302 (1446)
. +.+..+|++|+++. .+++ -+...|.| ..++||++|.+
T Consensus 500 f~~~k~~~~~~VvLiDElD~Lvtr~Qd---VlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 500 FTVPKPKRSTTVVLIDELDILVTRSQD---VLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred hccCCCCCCCEEEEeccHHHHhcccHH---HHHHHhcCCcCCCCceEEEE
Confidence 4 34678888888732 2222 22222332 34788877765
No 287
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.27 E-value=0.71 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=17.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
...|.||+|+||||-+..+++
T Consensus 50 ~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHH
Confidence 346889999999998877776
No 288
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.18 E-value=0.2 Score=49.60 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=17.8
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.++|++|+||||+|+.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999885
No 289
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.15 E-value=0.46 Score=61.97 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=66.4
Q ss_pred cceeEccCCchHHHHHHHHHcccc---hhccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDAR---LQDHF-DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
-+.++|.+|+|||++|+.++.... +.... +..+|. + +...++. +.. ...+.++....+.+.+
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a-------g~~--~~ge~e~rl~~i~~~~ 267 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA-------GTK--YRGEFEERLKRIFDEI 267 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-------cCC--CccHHHHHHHHHHHHH
Confidence 446999999999999999987321 11111 344552 1 2222111 111 1112233333332222
Q ss_pred -CCceEEEEEECCCCC-------ChhhHHHhcccccCCCCCcEEEEEccChHHHHhh-------CCCCceecCCCChHhH
Q 042296 263 -SQKKFLLVLDDVWNE-------NYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM-------GTVPAYPLKELSDEDC 327 (1446)
Q Consensus 263 -~~~~~LlVlDdv~~~-------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~-------~~~~~~~l~~L~~~~~ 327 (1446)
+.++.+|++|++..- ...+...+..+....+ .-++|.+|......... .....+.+...+.++.
T Consensus 268 ~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~ 346 (821)
T CHL00095 268 QENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEET 346 (821)
T ss_pred HhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHH
Confidence 356899999998321 0012223332222222 23555555544432211 2235678888888888
Q ss_pred HHHHHh
Q 042296 328 LNVFTQ 333 (1446)
Q Consensus 328 ~~lf~~ 333 (1446)
..++..
T Consensus 347 ~aILr~ 352 (821)
T CHL00095 347 IEILFG 352 (821)
T ss_pred HHHHHH
Confidence 887764
No 290
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.13 E-value=0.39 Score=54.31 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.8
Q ss_pred eeEccCCchHHHHHHHHHcc
Q 042296 189 KVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|++|+||||+|+.+.+.
T Consensus 3 ~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999864
No 291
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.11 E-value=0.99 Score=50.53 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=33.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSI 240 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 240 (1446)
.+.|.|.+|+||||+|.+++.... ..+=..++|++... +..++...+...+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 456889999999999998876321 22124578888765 3455666655543
No 292
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.08 E-value=0.35 Score=62.87 Aligned_cols=109 Identities=18% Similarity=0.208 Sum_probs=54.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLD-FDKLQVELKKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~ 265 (1446)
..-++|..|+|||++|+.+++. ....-...+.+.++.-.+ .. .+..-+|.+......+ ...+...++ ...
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~---~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p 670 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KH---SVSRLVGAPPGYVGYEEGGYLTEAVR---RRP 670 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hh---hHHHHhCCCCcccccchhHHHHHHHH---hCC
Confidence 4568899999999999999862 111112233344432111 10 1111122221101111 112222222 122
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCC----C-------CCcEEEEEccC
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAG----A-------PGSKIVVTTRN 304 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~----~-------~gs~iivTtR~ 304 (1446)
.-+|+||++...+...+..+...+..+ + ..+-||+||..
T Consensus 671 ~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 671 YSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred CCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 359999999877766776666555432 1 22337777765
No 293
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.08 E-value=0.83 Score=58.02 Aligned_cols=134 Identities=22% Similarity=0.281 Sum_probs=69.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchh---cc-CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ---DH-FDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~---~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
-+-++|.+|+|||++|+.+++..... .. .++.+|.. +... ++. + .. ...+.++....+.+.+
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla--G-~~--~~Ge~e~rl~~l~~~l 274 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA--G-TK--YRGDFEKRFKALLKQL 274 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc--c-cc--hhhhHHHHHHHHHHHH
Confidence 34689999999999999998732111 11 14444421 1111 111 1 00 1112223333333323
Q ss_pred -CCceEEEEEECCCCC--------ChhhHHHhcccccCCCCCcEEEEEccChHHHHhh-------CCCCceecCCCChHh
Q 042296 263 -SQKKFLLVLDDVWNE--------NYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM-------GTVPAYPLKELSDED 326 (1446)
Q Consensus 263 -~~~~~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~-------~~~~~~~l~~L~~~~ 326 (1446)
+.++.+|++|++..- ...+...+..++...+ .-+||-+|..++....+ .-...+.++..+.++
T Consensus 275 ~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~ 353 (758)
T PRK11034 275 EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEE 353 (758)
T ss_pred HhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHH
Confidence 356789999998521 1123333333433322 33455555443322211 122578999999999
Q ss_pred HHHHHHhhc
Q 042296 327 CLNVFTQHS 335 (1446)
Q Consensus 327 ~~~lf~~~a 335 (1446)
+.+++....
T Consensus 354 ~~~IL~~~~ 362 (758)
T PRK11034 354 TVQIINGLK 362 (758)
T ss_pred HHHHHHHHH
Confidence 999988653
No 294
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.00 E-value=0.55 Score=50.17 Aligned_cols=73 Identities=16% Similarity=0.012 Sum_probs=38.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhcc-C-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDH-F-DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
++|.|..|+||||+|+.+... .... . ..+..++...-+.........- .+.........+.+.+...+.....
T Consensus 2 igI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 689999999999999999873 2210 1 1234444443332222222211 1111111244566666666655544
No 295
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.98 E-value=0.65 Score=48.02 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|.|..|+|||||++.++.-
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999999999999863
No 296
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.33 Score=52.30 Aligned_cols=77 Identities=13% Similarity=0.237 Sum_probs=48.1
Q ss_pred cceeEccCCchHHHHHHHHHcccch--hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARL--QDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
.+-++|++|.|||+|+++++++..+ .+.+.....+.+.. ..++.+...+ ....+..+.+.|.+.+++
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE-------SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE-------SGKLVAKMFQKIQELVED 247 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh-------hhhHHHHHHHHHHHHHhC
Confidence 4568899999999999999987543 45555555555543 2333333332 223455666667777665
Q ss_pred ce--EEEEEECC
Q 042296 265 KK--FLLVLDDV 274 (1446)
Q Consensus 265 ~~--~LlVlDdv 274 (1446)
+. +.+.+|.|
T Consensus 248 ~~~lVfvLIDEV 259 (423)
T KOG0744|consen 248 RGNLVFVLIDEV 259 (423)
T ss_pred CCcEEEEEeHHH
Confidence 54 44557887
No 297
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=91.92 E-value=0.31 Score=51.37 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=49.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCC-------CCCCCCCHH------
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-FDITRITKSILNSIGTD-------QNVDSLDFD------ 252 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~------ 252 (1446)
-+.|.|.+|+|||+|+..+.++. .=+.++++.+++. .++.++.+++...-... ...++....
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~ 92 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYT 92 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhcc
Confidence 34799999999999999998743 2234577888755 34566666654331110 000111011
Q ss_pred --HHHHHHHHHcCCceEEEEEECC
Q 042296 253 --KLQVELKKQLSQKKFLLVLDDV 274 (1446)
Q Consensus 253 --~~~~~l~~~l~~~~~LlVlDdv 274 (1446)
...+.++. +++.+|+++||+
T Consensus 93 a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 93 ALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHH--TTSEEEEEEETH
T ss_pred chhhhHHHhh--cCCceeehhhhh
Confidence 12233333 799999999998
No 298
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.91 E-value=0.48 Score=56.34 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcE-EEEEccChHHHHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSK-IVVTTRNQAVVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~-iivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
++|-=+.|+|.|.-.+...|..+..-+-.-....+ |+.||--+.+.... +..+.|.++.++.++-...+...+-...-
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I 196 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI 196 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC
Confidence 34555888999977666777776655543333444 44555555554433 44578999999999888888777643332
Q ss_pred CCCChhHHHHHHHHHHHhCCc
Q 042296 341 FNMHKSLEEIGKKIVIKCNGL 361 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~gl 361 (1446)
..+ .+....|++..+|.
T Consensus 197 ~~e----~~aL~~ia~~a~Gs 213 (515)
T COG2812 197 NIE----EDALSLIARAAEGS 213 (515)
T ss_pred ccC----HHHHHHHHHHcCCC
Confidence 222 23333455555553
No 299
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.89 E-value=0.35 Score=62.20 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=50.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHHHcCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDS-LDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~l~~~l~~~~ 266 (1446)
.-++|+.|+|||++|+.++.. . +...+.++.++-.+.. .+...++....... .....+...++ +...
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~----~~~~lig~~~gyvg~~~~~~l~~~~~---~~p~ 554 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH----TVSRLIGAPPGYVGFEQGGLLTEAVR---KHPH 554 (731)
T ss_pred EEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----cHHHHhcCCCCCcccchhhHHHHHHH---hCCC
Confidence 357899999999999999872 2 2334555554422211 11222222211111 11222333332 1334
Q ss_pred EEEEEECCCCCChhhHHHhcccccC
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEA 291 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~ 291 (1446)
-+|+||+++..+.+.+..+...+..
T Consensus 555 ~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 555 CVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred eEEEEechhhcCHHHHHHHHHhhcc
Confidence 5999999988777767666665543
No 300
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.87 E-value=0.48 Score=48.75 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=17.9
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.++|++|+||||++..++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999886
No 301
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.83 E-value=0.54 Score=51.99 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=47.8
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCH--HHHHHHHHHHhcCCCC--CCCCCHHHH-HHHHHH
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDI--TRITKSILNSIGTDQN--VDSLDFDKL-QVELKK 260 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~--~~~~~~~~~-~~~l~~ 260 (1446)
..+.++|.+|+||||++..++.. ....-..+++++.. .+.. .+-++..++..+.+.. ....+.... ...+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 46678899999999999888863 33332345666543 2322 2334445555553211 012233222 334444
Q ss_pred HcCCceEEEEEECCC
Q 042296 261 QLSQKKFLLVLDDVW 275 (1446)
Q Consensus 261 ~l~~~~~LlVlDdv~ 275 (1446)
...+..-+||+|-.-
T Consensus 150 ~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 150 AKARNIDVVLIDTAG 164 (272)
T ss_pred HHHCCCCEEEEeCCC
Confidence 444455678888864
No 302
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.81 E-value=0.23 Score=64.39 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=55.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDS-LDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~l~~~l~~~ 265 (1446)
..-++|+.|+|||.+|+.++.. .-+.....+-++++.-.+ ...+..-+|.+..... .....+...+++ ..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~----~~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p 668 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE----AHTVSRLKGSPPGYVGYGEGGVLTEAVRR---KP 668 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh----hhhhccccCCCCCcccccccchHHHHHHh---CC
Confidence 3457899999999999988762 211111222222221111 0111111222211011 111223333432 45
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCC-----------CCcEEEEEccC
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGA-----------PGSKIVVTTRN 304 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~ 304 (1446)
.-+|+||++...+...+..+...+..+. ..+-||+||..
T Consensus 669 ~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 669 YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred CcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 5799999998777666666655554432 45667777754
No 303
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.68 E-value=0.83 Score=46.77 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=53.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEE------eCCCCCHHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTC------VSEDFDITRITKSILNSIGTDQNVDSLDF-DKLQVELK 259 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~l~ 259 (1446)
.++|+|..|+|||||++.+..-. ....+.+++. +.+... .+. +...-.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~--------------------LSgGq~qrv~la 83 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID--------------------LSGGELQRVAIA 83 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC--------------------CCHHHHHHHHHH
Confidence 56899999999999999998632 1222333321 111111 111 22233345
Q ss_pred HHcCCceEEEEEECCCCC-ChhhHHHhcccccCC-CC-CcEEEEEccChHHHHhh
Q 042296 260 KQLSQKKFLLVLDDVWNE-NYNDWIDLSRPFEAG-AP-GSKIVVTTRNQAVVAIM 311 (1446)
Q Consensus 260 ~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~-gs~iivTtR~~~v~~~~ 311 (1446)
..+..++-++++|.--.. +......+...+... .. +..||++|.+......+
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 555667788999986332 112222222222211 12 35688888777655543
No 304
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.67 E-value=0.75 Score=54.24 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=46.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCC--CCCCHHHHHHHHHHHcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQNV--DSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~ 263 (1446)
.+.++|..|+||||+|..++.. ....-..++-|++.. .....+.++.++.+++.+... ...+.........+..+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~ 174 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK 174 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh
Confidence 5678999999999999999863 332222344444422 112344556666666543321 11233333333333333
Q ss_pred CceEEEEEECCC
Q 042296 264 QKKFLLVLDDVW 275 (1446)
Q Consensus 264 ~~~~LlVlDdv~ 275 (1446)
+. -+||+|..-
T Consensus 175 ~~-DvVIIDTAG 185 (437)
T PRK00771 175 KA-DVIIVDTAG 185 (437)
T ss_pred cC-CEEEEECCC
Confidence 33 568888763
No 305
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.67 E-value=1.2 Score=46.89 Aligned_cols=60 Identities=10% Similarity=0.183 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCceEEEEEECCCC-CChhhHHHhcccccC--CCCCcEEEEEccChHHHHhhC
Q 042296 253 KLQVELKKQLSQKKFLLVLDDVWN-ENYNDWIDLSRPFEA--GAPGSKIVVTTRNQAVVAIMG 312 (1446)
Q Consensus 253 ~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~~ 312 (1446)
+..-.+.+.+-.++-+|+-|.=-. -+...-+.+...+.. ...|..||+.|-++.+|..+.
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 334457777788888999987311 111122223333322 235889999999999988643
No 306
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=91.66 E-value=0.8 Score=45.72 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCceEEEEEEC----CCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhC
Q 042296 252 DKLQVELKKQLSQKKFLLVLDD----VWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMG 312 (1446)
Q Consensus 252 ~~~~~~l~~~l~~~~~LlVlDd----v~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~ 312 (1446)
++-.-.|.+.+-+++-+++-|. ++.+ ..|+-+.-.-.-+..|+.||++|-+.++...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~--~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPD--LSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChH--HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3344456667778888888886 3333 345433222222457999999999998877763
No 307
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.63 E-value=0.015 Score=58.91 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=74.4
Q ss_pred cccC-ccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecccCCCcccccCCccc
Q 042296 584 SELP-NSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEMPRGIG 662 (1446)
Q Consensus 584 ~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 662 (1446)
+++| ..|........||++.|++..+-..|+.++.|..||++.| .+..+|.+++.+..++++++..|. ....|..++
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCcccc
Confidence 3444 2355667899999999999999889999999999999987 589999999999999999998887 889999999
Q ss_pred cccccccc
Q 042296 663 KLTFLQTL 670 (1446)
Q Consensus 663 ~L~~L~~L 670 (1446)
++..++.+
T Consensus 109 k~~~~k~~ 116 (326)
T KOG0473|consen 109 KEPHPKKN 116 (326)
T ss_pred ccCCcchh
Confidence 99988887
No 308
>PTZ00035 Rad51 protein; Provisional
Probab=91.62 E-value=0.66 Score=53.07 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=50.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchh----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCCCCHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ----DHFDLKAWTCVSEDFDITRITKSILNSIGTDQN--------VDSLDFDKL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~ 254 (1446)
...|+|..|+||||++..++-..... ..=..++|++....++..++ .+++++.+.... ....+.++.
T Consensus 120 iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e~~ 198 (337)
T PTZ00035 120 ITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHEHQ 198 (337)
T ss_pred EEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHHHH
Confidence 45799999999999999887432211 11235679998887777764 445655543321 011233333
Q ss_pred HHHH---HHHc-CCceEEEEEECC
Q 042296 255 QVEL---KKQL-SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l---~~~l-~~~~~LlVlDdv 274 (1446)
...+ ...+ ..+--|||+|-+
T Consensus 199 ~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 199 MQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHhhccCccEEEEECc
Confidence 3332 2222 234558888887
No 309
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.51 E-value=0.68 Score=47.46 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=56.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC--CCCHHHHHHHHHHHhcC--CCCC-CC-------CCHH-H
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE--DFDITRITKSILNSIGT--DQNV-DS-------LDFD-K 253 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~-~~-------~~~~-~ 253 (1446)
..+|+|..|.|||||.+.++.-. ....+.+++.-.. ....... ...++. +... .. .+.. .
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 45899999999999999998632 1223333332110 0011111 111110 0000 00 1111 1
Q ss_pred HHHHHHHHcCCceEEEEEECCCCC-ChhhHHHhcccccCCCCCcEEEEEccChHHHHh
Q 042296 254 LQVELKKQLSQKKFLLVLDDVWNE-NYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAI 310 (1446)
Q Consensus 254 ~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 310 (1446)
..-.+...+-.++-++++|+-... +......+...+.....+..||++|.+.+....
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 122345556667789999996432 112222232222222235678888888766643
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.51 E-value=0.64 Score=52.74 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=53.1
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc-C
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-FDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL-S 263 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~ 263 (1446)
+.+.++|+.|+||||++..++.. ....-..+.+|++..- ....+-++...+.++.+.. ...+..++...+...- .
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMTYV 283 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHHhc
Confidence 35689999999999999888863 2222234666666422 2234455666666654432 3345666655554432 1
Q ss_pred CceEEEEEECCCC
Q 042296 264 QKKFLLVLDDVWN 276 (1446)
Q Consensus 264 ~~~~LlVlDdv~~ 276 (1446)
+..=+|++|-.-.
T Consensus 284 ~~~D~VLIDTAGr 296 (407)
T PRK12726 284 NCVDHILIDTVGR 296 (407)
T ss_pred CCCCEEEEECCCC
Confidence 3456788888743
No 311
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.48 E-value=0.94 Score=48.47 Aligned_cols=122 Identities=19% Similarity=0.271 Sum_probs=68.4
Q ss_pred cceeEccCCchHHHHHHHHHcc--c---chh---c---cC---CceEEEEeCCCC------CH-----------------
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND--A---RLQ---D---HF---DLKAWTCVSEDF------DI----------------- 229 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~--~---~~~---~---~F---~~~~wv~vs~~~------~~----------------- 229 (1446)
.++|+|+.|.|||||.+.+..- + ++. . .+ ..++||.=...+ .+
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~ 111 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRR 111 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccc
Confidence 5689999999999999999751 1 010 0 01 134444321111 11
Q ss_pred -----HHHHHHHHHHhcCCCC----CCCCCHHHH-HHHHHHHcCCceEEEEEEC----CCCCChhhHHHhcccccCCCCC
Q 042296 230 -----TRITKSILNSIGTDQN----VDSLDFDKL-QVELKKQLSQKKFLLVLDD----VWNENYNDWIDLSRPFEAGAPG 295 (1446)
Q Consensus 230 -----~~~~~~i~~~l~~~~~----~~~~~~~~~-~~~l~~~l~~~~~LlVlDd----v~~~~~~~~~~~~~~l~~~~~g 295 (1446)
.+...+.+++++...- ....+-.+. .-.+.+.|..+.=|++||. |+........++...+... |
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g 189 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--G 189 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--C
Confidence 2444555555543321 011222233 3456777888999999997 3333334444555555443 8
Q ss_pred cEEEEEccChHHHHh
Q 042296 296 SKIVVTTRNQAVVAI 310 (1446)
Q Consensus 296 s~iivTtR~~~v~~~ 310 (1446)
..||++|-+-+....
T Consensus 190 ~tIl~vtHDL~~v~~ 204 (254)
T COG1121 190 KTVLMVTHDLGLVMA 204 (254)
T ss_pred CEEEEEeCCcHHhHh
Confidence 899999988654443
No 312
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.32 Score=60.26 Aligned_cols=102 Identities=19% Similarity=0.319 Sum_probs=58.6
Q ss_pred eeEccCCchHHHHHHHHHcccchhccC---CceEEEEeCCCCCHHHHHHH--HHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHF---DLKAWTCVSEDFDITRITKS--ILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
-..|+.|||||-||++++. .-| +..+-+ |+.+.+.. +.+-+|.+..-...+ + .-.+-+..+
T Consensus 525 lF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~------DMSEy~EkHsVSrLIGaPPGYVGye--e-GG~LTEaVR 590 (786)
T COG0542 525 LFLGPTGVGKTELAKALAE-----ALFGDEQALIRI------DMSEYMEKHSVSRLIGAPPGYVGYE--E-GGQLTEAVR 590 (786)
T ss_pred EeeCCCcccHHHHHHHHHH-----HhcCCCccceee------chHHHHHHHHHHHHhCCCCCCceec--c-ccchhHhhh
Confidence 3579999999999999875 234 222322 34443333 223334332211111 1 233445556
Q ss_pred CceE-EEEEECCCCCChhhHHHhcccccCC----C-------CCcEEEEEccC
Q 042296 264 QKKF-LLVLDDVWNENYNDWIDLSRPFEAG----A-------PGSKIVVTTRN 304 (1446)
Q Consensus 264 ~~~~-LlVlDdv~~~~~~~~~~~~~~l~~~----~-------~gs~iivTtR~ 304 (1446)
.++| +|.||.|...+.+-..-+...|.++ + .++-||+||--
T Consensus 591 r~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 591 RKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred cCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 7777 7889999888777776666666554 1 34566777753
No 313
>PRK10867 signal recognition particle protein; Provisional
Probab=91.40 E-value=0.51 Score=55.47 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.5
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.++|.+|+||||+|..++.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3567889999999998887776
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.31 E-value=0.46 Score=48.18 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=58.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC--CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE--DFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
.++|+|..|.|||||.+.++... ....+.+++.-.. ..+..+..+ ..++.-. +-..-+...-.+.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral~~ 99 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHHhc
Confidence 56899999999999999998632 2234444443211 111111111 1111100 011112223334555566
Q ss_pred ceEEEEEECCCCC-ChhhHHHhcccccCC-CCCcEEEEEccChHHHHh
Q 042296 265 KKFLLVLDDVWNE-NYNDWIDLSRPFEAG-APGSKIVVTTRNQAVVAI 310 (1446)
Q Consensus 265 ~~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~ 310 (1446)
++-++++|+--.. +......+...+... ..|..||++|.+...+..
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7788899996432 222223333333221 246778888888764443
No 315
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.23 E-value=1.2 Score=58.42 Aligned_cols=132 Identities=13% Similarity=0.179 Sum_probs=65.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC------CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF------DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKK 260 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 260 (1446)
-+.++|.+|+|||++|+.++.. +...+ ...+|.- ++..+ +. +.. ...+.+.....+.+
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~l----~a--~~~---~~g~~e~~l~~~l~ 259 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGAL----IA--GAK---YRGEFEERLKAVLN 259 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHHH----hh--cch---hhhhHHHHHHHHHH
Confidence 3468999999999999998873 22211 2233321 11111 10 000 01122222222222
Q ss_pred Hc-C-CceEEEEEECCCCCC-------hhhHHHhcccccCCCCCcEEEEEccChHHHHhh-------CCCCceecCCCCh
Q 042296 261 QL-S-QKKFLLVLDDVWNEN-------YNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM-------GTVPAYPLKELSD 324 (1446)
Q Consensus 261 ~l-~-~~~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~-------~~~~~~~l~~L~~ 324 (1446)
.+ + +++.+|++|++..-. ..+...+..+....+ .-++|-+|........+ .-...+.+...+.
T Consensus 260 ~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~ 338 (852)
T TIGR03346 260 EVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTV 338 (852)
T ss_pred HHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCH
Confidence 22 2 468999999985321 011223333332222 23455444433332111 2224678888899
Q ss_pred HhHHHHHHhhc
Q 042296 325 EDCLNVFTQHS 335 (1446)
Q Consensus 325 ~~~~~lf~~~a 335 (1446)
++..+++....
T Consensus 339 ~~~~~iL~~~~ 349 (852)
T TIGR03346 339 EDTISILRGLK 349 (852)
T ss_pred HHHHHHHHHHH
Confidence 99998887653
No 316
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.18 E-value=0.51 Score=51.85 Aligned_cols=110 Identities=17% Similarity=0.079 Sum_probs=57.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEE---eCCCCCHHHHHHHHHHHhcCCCCC------CC-CCHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTC---VSEDFDITRITKSILNSIGTDQNV------DS-LDFDKLQV 256 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~i~~~l~~~~~~------~~-~~~~~~~~ 256 (1446)
-+.|+|..|+||||+.+.++... . ...+.+++. +....+..+ +......-... .. .+... ..
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~~v~~~d~~~e----i~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGKKVGIVDERSE----IAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCEEeecchhHHH----HHHHhcccccccccccccccccchH-HH
Confidence 45799999999999999998732 2 222333332 111111222 22222111000 01 11111 11
Q ss_pred HHHHHc-CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHH
Q 042296 257 ELKKQL-SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVA 309 (1446)
Q Consensus 257 ~l~~~l-~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 309 (1446)
.+...+ ...+=+||+|.+-.. ..+..+...+. .|..||+||-+..+..
T Consensus 185 ~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 223333 257889999998543 55555555442 4778999998766544
No 317
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.17 E-value=0.57 Score=53.23 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=49.8
Q ss_pred cccceeEccCCchHHH-HHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 185 VNEAKVYGMGGLGKTT-LAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 185 ~~~~~i~G~gG~GKTt-La~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
-+++.++|+-|+|||| ||+..+.-. ....=..++.|+... .....+-++..++-++.+.. ...+..++...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l- 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL- 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh-
Confidence 4567899999999996 666655421 112224567777642 22445556666666666654 455666666655543
Q ss_pred CCceEEEEEECC
Q 042296 263 SQKKFLLVLDDV 274 (1446)
Q Consensus 263 ~~~~~LlVlDdv 274 (1446)
++. =+|.+|=+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 223 34445555
No 318
>PHA02244 ATPase-like protein
Probab=91.14 E-value=0.56 Score=52.99 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.5
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+-++|..|+|||++|+++++.
T Consensus 122 VLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999873
No 319
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.08 E-value=1.3 Score=45.17 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=55.7
Q ss_pred cceeEccCCchHHHHHHHHHcccch-hcc--CC---ceEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARL-QDH--FD---LKAWTCVSEDFDI--TRITKSILNSIGTDQNVDSLDFDKLQVEL 258 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~-~~~--F~---~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 258 (1446)
.++|+|..|.|||||++.+..-... .+. ++ .+.+ +.+.... ..+.+.+... ... .-..-+...-.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~-~LS~G~~~rv~l 102 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDD-VLSGGEQQRLAF 102 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCC-CCCHHHHHHHHH
Confidence 4589999999999999999863211 111 11 1222 2222211 1222222210 111 111122233344
Q ss_pred HHHcCCceEEEEEECCCCC-ChhhHHHhcccccCCCCCcEEEEEccChHHHH
Q 042296 259 KKQLSQKKFLLVLDDVWNE-NYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVA 309 (1446)
Q Consensus 259 ~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 309 (1446)
.+.+-.++=++++|.--.. +......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 5555667778889985322 112222233333222 456888888776543
No 320
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=91.05 E-value=0.2 Score=52.48 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=50.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc----
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL---- 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l---- 262 (1446)
...|.|.+|.||||+++.+... .... ...+.+...... ....+.+..+.. ..............-
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~----Aa~~L~~~~~~~----a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNK----AAKELREKTGIE----AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHH----HHHHHHHHHTS-----EEEHHHHTTEECCEECCSS
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHH----HHHHHHHhhCcc----hhhHHHHHhcCCccccccc
Confidence 3468899999999999988763 2222 123333332221 222233333211 111111100000000
Q ss_pred --CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEcc
Q 042296 263 --SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTR 303 (1446)
Q Consensus 263 --~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR 303 (1446)
..++-+||+|++...+...+..+...... .|+|+|+.--
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 12345999999987766677777666554 5778887653
No 321
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.04 E-value=0.37 Score=49.65 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=18.6
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
++|.|.+|+||||+|+.+..
T Consensus 2 i~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999987
No 322
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.02 E-value=0.99 Score=52.34 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=50.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchh--ccCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ--DHFDLKAWTCVSEDFD--ITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
.+.++|..|+||||.+..++...... .+=..+..+++. .+. ....++..++.++.+.. ...+.+++...+.+.
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEITQS- 252 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHHHh-
Confidence 56789999999999998887632211 112245555554 333 23335555666665432 334455555555543
Q ss_pred CCceEEEEEECCCC
Q 042296 263 SQKKFLLVLDDVWN 276 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~ 276 (1446)
.+.-+|++|-+-.
T Consensus 253 -~~~DlVLIDTaGr 265 (388)
T PRK12723 253 -KDFDLVLVDTIGK 265 (388)
T ss_pred -CCCCEEEEcCCCC
Confidence 4456888898744
No 323
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.01 E-value=1.9 Score=45.72 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=86.8
Q ss_pred eeEccCCchHHHHHHHHHccc----chhccCCceEEEEeCCC---------------------CCHHHHHHHHHHHhcCC
Q 042296 189 KVYGMGGLGKTTLAQLVYNDA----RLQDHFDLKAWTCVSED---------------------FDITRITKSILNSIGTD 243 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~----~~~~~F~~~~wv~vs~~---------------------~~~~~~~~~i~~~l~~~ 243 (1446)
-+||+.|.||-|.+..+.+.. -.+-.-+.+.|.+-+.. ..-+-+.++++++....
T Consensus 38 l~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt 117 (351)
T KOG2035|consen 38 LVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQT 117 (351)
T ss_pred EEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhh
Confidence 589999999999776554421 11112234455443322 11233444555544332
Q ss_pred CCCCCCCHHHHHHHHHHHcCCceE-EEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhh-CCCCceecC
Q 042296 244 QNVDSLDFDKLQVELKKQLSQKKF-LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIM-GTVPAYPLK 320 (1446)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~ 320 (1446)
...+. -..+.| ++|+-.+++-..+.-..+.+-...-...+|+|+.-.+. .+-... +..-.+++.
T Consensus 118 ~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvp 184 (351)
T KOG2035|consen 118 QQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVP 184 (351)
T ss_pred cchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCC
Confidence 21000 012344 45565554443344444444444444577877744321 111111 112357889
Q ss_pred CCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch-hHHHHH
Q 042296 321 ELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP-LAAKTL 368 (1446)
Q Consensus 321 ~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~ 368 (1446)
..+++|-...+++.+-..+- ..+ .+++.+|+++++|.- -|+-++
T Consensus 185 aps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 185 APSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred CCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999887744331 222 678999999998864 444433
No 324
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.01 E-value=0.16 Score=42.60 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.4
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|.|..|+||||+|+.+.+.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999998873
No 325
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.01 E-value=0.48 Score=55.64 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=44.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCC--CCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFD--ITRITKSILNSIGTDQNV--DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~l 262 (1446)
.+.++|.+|+||||+|..++.....+..+ .++-|+.. .+. ..+.++....+.+.+... ...++.++.....+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 56788999999999988887632111112 23334432 222 233344455555443221 1234444443333333
Q ss_pred CCceE-EEEEECCC
Q 042296 263 SQKKF-LLVLDDVW 275 (1446)
Q Consensus 263 ~~~~~-LlVlDdv~ 275 (1446)
..+.| +||+|-.-
T Consensus 179 ~~~~~DvVIIDTaG 192 (428)
T TIGR00959 179 KENGFDVVIVDTAG 192 (428)
T ss_pred HhcCCCEEEEeCCC
Confidence 33444 77777764
No 326
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.94 E-value=0.36 Score=49.66 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=18.9
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
++|.|.+|+||||+|+.+...
T Consensus 2 i~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999873
No 327
>PRK06217 hypothetical protein; Validated
Probab=90.90 E-value=0.29 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.1
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|.|.+|+||||+|+++...
T Consensus 4 I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999874
No 328
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=90.86 E-value=0.11 Score=48.73 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=17.3
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCC
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFD 216 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~ 216 (1446)
-++|.+|+||||+|+.++. .....|.
T Consensus 3 Lleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 3 LLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEES---HHHHHHHHHHHH--HTT--EE
T ss_pred eeECCCccHHHHHHHHHHH--HcCCcee
Confidence 4789999999999999997 4555564
No 329
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.84 E-value=0.83 Score=52.86 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=45.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l 262 (1446)
.+.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++ +.-+++++..... ...+.+++...+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~--- 155 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE--- 155 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH---
Confidence 3468899999999999998863 2333346778776543 3332 2224455533211 1223444444443
Q ss_pred CCceEEEEEECC
Q 042296 263 SQKKFLLVLDDV 274 (1446)
Q Consensus 263 ~~~~~LlVlDdv 274 (1446)
+.+.-+||+|.+
T Consensus 156 ~~~~~lVVIDSI 167 (372)
T cd01121 156 ELKPDLVIIDSI 167 (372)
T ss_pred hcCCcEEEEcch
Confidence 235667888887
No 330
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.84 E-value=0.88 Score=46.73 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=58.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcC--CCC--CCC--------CCHHH-
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGT--DQN--VDS--------LDFDK- 253 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--~~~--~~~--------~~~~~- 253 (1446)
.++|+|..|.|||||++.++... ....+.+++.-....+.. ..+...++. +.. ... .+..+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 46899999999999999998632 122333443211000000 011111110 000 000 11111
Q ss_pred HHHHHHHHcCCceEEEEEECCCCC-ChhhHHHhcccccCC-CCCcEEEEEccChHHHHhh
Q 042296 254 LQVELKKQLSQKKFLLVLDDVWNE-NYNDWIDLSRPFEAG-APGSKIVVTTRNQAVVAIM 311 (1446)
Q Consensus 254 ~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~~ 311 (1446)
..-.+...+..++=++++|+--.. +......+...+... ..|..||++|.+...+..+
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 222455566778889999996432 112222233333221 1367899999887655543
No 331
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=0.033 Score=55.74 Aligned_cols=84 Identities=24% Similarity=0.286 Sum_probs=49.8
Q ss_pred cceEEEccCCCcchhhhcccCccCCCCCcceeeecCcCCccccCcccccCCCcccccceecccccCCccCc-cCCCCCCC
Q 042296 1306 LQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLHDVVSFSPQELGTTLPASLTHLWIYDFQNLECLS-SVGQNLTS 1384 (1446)
Q Consensus 1306 L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~-~~~~~l~~ 1384 (1446)
++.+|-+++.+. .++...+.++++++.|.+.+|..+.+..-+.++. +..+|+.|+++.|+.+++-. .++..+++
T Consensus 103 IeaVDAsds~I~----~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSSIM----YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred EEEEecCCchHH----HHHHHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHHHHHHhhh
Confidence 566677766643 3343447788889999999988777765444433 44556666666665554432 12255555
Q ss_pred cceeecccCC
Q 042296 1385 LVYLWLYACP 1394 (1446)
Q Consensus 1385 L~~L~l~~c~ 1394 (1446)
|+.|.|.+.+
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 5555555533
No 332
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.78 E-value=0.5 Score=61.62 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=55.3
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHcCCce-
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV-DSLDFDKLQVELKKQLSQKK- 266 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~- 266 (1446)
-++|+.|+|||+||+.+++. .-..-...+-++.++-.+... +..-++.+... .......+ .+.++.++
T Consensus 543 lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~----~~~l~g~~~gyvg~~~~~~l----~~~~~~~p~ 612 (821)
T CHL00095 543 LFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHT----VSKLIGSPPGYVGYNEGGQL----TEAVRKKPY 612 (821)
T ss_pred EEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccccc----HHHhcCCCCcccCcCccchH----HHHHHhCCC
Confidence 47899999999999999862 111112233344443222111 11112221110 11111223 33333344
Q ss_pred EEEEEECCCCCChhhHHHhcccccCC-----------CCCcEEEEEccC
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAG-----------APGSKIVVTTRN 304 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivTtR~ 304 (1446)
-+|+||++...+...+..+...+..+ -..+-||+||..
T Consensus 613 ~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 613 TVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred eEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 58899999887777676666655543 134556777764
No 333
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=90.75 E-value=0.69 Score=54.11 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=46.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-----CC-CCCCC----HHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTD-----QN-VDSLD----FDKLQV 256 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~-~~~~~----~~~~~~ 256 (1446)
.++|+|..|+|||||++.+.... .....++|+.-.+.-++.++....+...... .. .++.- ......
T Consensus 167 ri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~ 243 (450)
T PRK06002 167 RIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTAT 243 (450)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 35789999999999999888632 1223445544334445555555444433111 00 01110 111122
Q ss_pred HHHHHc--CCceEEEEEECC
Q 042296 257 ELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 257 ~l~~~l--~~~~~LlVlDdv 274 (1446)
.+.+++ +++.+|+++||+
T Consensus 244 ~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHcCCCEEEeccch
Confidence 233333 589999999998
No 334
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.65 E-value=1.4 Score=43.73 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.1
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|+|.+|+||||+|+.+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999886
No 335
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=90.59 E-value=0.68 Score=50.29 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=52.7
Q ss_pred cceeEccCCchHHHHHHHHHcccch--hccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCC-------CCCCCH----H
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARL--QDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQN-------VDSLDF----D 252 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~----~ 252 (1446)
.++|.|-.|+|||+|+..+.++..+ +.+-+.++++-+++.. ++.++.+++.+.=..... .++.-. .
T Consensus 71 R~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~ 150 (276)
T cd01135 71 KIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITP 150 (276)
T ss_pred EEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHH
Confidence 3479999999999999998875321 1224678888887765 456666666543211110 011000 1
Q ss_pred HHHHHHHHHc---CCceEEEEEECC
Q 042296 253 KLQVELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 253 ~~~~~l~~~l---~~~~~LlVlDdv 274 (1446)
.....+.+++ +++++|+++||+
T Consensus 151 ~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 151 RMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122344444 378999999998
No 336
>PRK14974 cell division protein FtsY; Provisional
Probab=90.56 E-value=1.2 Score=50.64 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=46.9
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCC--CCCCHHHH-HHHHHH
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFD--ITRITKSILNSIGTDQNV--DSLDFDKL-QVELKK 260 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~--~~~~~~~~-~~~l~~ 260 (1446)
..+.++|+.|+||||++..++.... ...+ .++.+. .+.+. ..+.++.....++.+... ...+.... ...+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 3678999999999998888876321 1223 233443 23332 334455666666644321 12233332 233333
Q ss_pred HcCCceEEEEEECCCCC
Q 042296 261 QLSQKKFLLVLDDVWNE 277 (1446)
Q Consensus 261 ~l~~~~~LlVlDdv~~~ 277 (1446)
......=+|++|-+-..
T Consensus 218 ~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 218 AKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHhCCCCEEEEECCCcc
Confidence 22222338899987443
No 337
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=90.56 E-value=5.3 Score=44.74 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=58.5
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-hHHHHh-hCCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-QAVVAI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++=++|+||+...+......+...+..-..++.+|++|.+ ..+... ......+++.++++++..+.+....
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~------ 162 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN------ 162 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC------
Confidence 47778889998766555555666665554467777765544 444433 2345679999999999887776531
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
.+ ++.+..++...+|.--|+..+
T Consensus 163 -~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 163 -KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred -CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 11 233555666666633455543
No 338
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=90.55 E-value=0.97 Score=47.54 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=44.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEE---------eCCCCCHHHH--HHHHHHHhcCCCCCCCC-------
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTC---------VSEDFDITRI--TKSILNSIGTDQNVDSL------- 249 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---------vs~~~~~~~~--~~~i~~~l~~~~~~~~~------- 249 (1446)
+.++||+|+||||..+.++.+.. ..+....-|. ..-+.|+++. .++..++.+.+.+....
T Consensus 22 ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~ 99 (366)
T KOG1532|consen 22 ILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFA 99 (366)
T ss_pred EEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHH
Confidence 45789999999999999987532 2232222222 2233455543 45677777665543222
Q ss_pred -CHHHHHHHHHHHcCCceEEE
Q 042296 250 -DFDKLQVELKKQLSQKKFLL 269 (1446)
Q Consensus 250 -~~~~~~~~l~~~l~~~~~Ll 269 (1446)
..++.+..+.+.-..-+|.|
T Consensus 100 tk~dqv~~~iek~~~~~~~~l 120 (366)
T KOG1532|consen 100 TKFDQVIELIEKRAEEFDYVL 120 (366)
T ss_pred HHHHHHHHHHHHhhcccCEEE
Confidence 23445555555544444444
No 339
>PTZ00185 ATPase alpha subunit; Provisional
Probab=90.40 E-value=1 Score=52.85 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=50.1
Q ss_pred ceeEccCCchHHHHH-HHHHcccchh-----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCCCCHH-
Q 042296 188 AKVYGMGGLGKTTLA-QLVYNDARLQ-----DHFDLKAWTCVSEDFDITRITKSILNSIGTDQN--------VDSLDFD- 252 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~- 252 (1446)
..|.|..|+|||+|| ..+.+...+. ++-+.++++-+++..+...-+.+.+++-+.-.. .++.-..
T Consensus 192 ~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~ 271 (574)
T PTZ00185 192 ELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQY 271 (574)
T ss_pred EEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHH
Confidence 368899999999997 5566643221 234567888888776543334444444431110 0111111
Q ss_pred ---HHHHHHHHHc--CCceEEEEEECCC
Q 042296 253 ---KLQVELKKQL--SQKKFLLVLDDVW 275 (1446)
Q Consensus 253 ---~~~~~l~~~l--~~~~~LlVlDdv~ 275 (1446)
-....+.+++ +++.+|||+||+-
T Consensus 272 ~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 272 LAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 0112233333 5899999999983
No 340
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.39 E-value=0.67 Score=50.44 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=30.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKS 235 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 235 (1446)
.+-|.|.+|+|||++|.++... .-..-..++||+..+. ..++.+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeCC--HHHHHHH
Confidence 3468999999999999887652 1133457888887653 4444444
No 341
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.38 E-value=0.34 Score=55.73 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=45.2
Q ss_pred cccceeEccCCchHHHHHHHHHcccch----hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Q 042296 185 VNEAKVYGMGGLGKTTLAQLVYNDARL----QDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKK 260 (1446)
Q Consensus 185 ~~~~~i~G~gG~GKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 260 (1446)
.+.+-|||..|.|||.|.-.+|+...+ +-||. ..+.++-+.+..-.. ..... ..+.+
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~-~~~~l----~~va~ 122 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRG-QDDPL----PQVAD 122 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhC-CCccH----HHHHH
Confidence 445678999999999999999985433 23343 233333333321111 11222 33445
Q ss_pred HcCCceEEEEEECCCCCChhh
Q 042296 261 QLSQKKFLLVLDDVWNENYND 281 (1446)
Q Consensus 261 ~l~~~~~LlVlDdv~~~~~~~ 281 (1446)
.+.++..||.||...-.+..+
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaD 143 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIAD 143 (362)
T ss_pred HHHhcCCEEEEeeeeccchhH
Confidence 556677799999975554333
No 342
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.37 E-value=1.1 Score=53.14 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=70.8
Q ss_pred cceeEccCCchHHH-HHHHHHcccchhccCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCC---------CCC-----
Q 042296 187 EAKVYGMGGLGKTT-LAQLVYNDARLQDHFDLKAWTCVSEDFD--ITRITKSILNSIGTDQNV---------DSL----- 249 (1446)
Q Consensus 187 ~~~i~G~gG~GKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~---------~~~----- 249 (1446)
++.|+|--|+|||| ||+.+|.+ .|...-.|-+.++-. ...+.+.+.++++..-.. +..
T Consensus 373 vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~ 447 (1042)
T KOG0924|consen 373 VVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTK 447 (1042)
T ss_pred EEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCcee
Confidence 56789999999997 88888864 232222455555544 345677777777543210 000
Q ss_pred -----CHHHHHHHHHHHcCCceEEEEEECCCCCCh--hhHHHhcccccCCCCCcEEEEEccCh---HHHHhhCCCCceec
Q 042296 250 -----DFDKLQVELKKQLSQKKFLLVLDDVWNENY--NDWIDLSRPFEAGAPGSKIVVTTRNQ---AVVAIMGTVPAYPL 319 (1446)
Q Consensus 250 -----~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~~~l~~~~~gs~iivTtR~~---~v~~~~~~~~~~~l 319 (1446)
+---+.+.++...-.|=-.||+|.+.+... +-.--+..........-|+|||+-.. ..+..+|....+.+
T Consensus 448 IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~I 527 (1042)
T KOG0924|consen 448 IKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTI 527 (1042)
T ss_pred EEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeee
Confidence 111122333333334556889999865421 11111222222234577999999754 34455565555555
Q ss_pred CCC
Q 042296 320 KEL 322 (1446)
Q Consensus 320 ~~L 322 (1446)
++-
T Consensus 528 pGR 530 (1042)
T KOG0924|consen 528 PGR 530 (1042)
T ss_pred cCC
Confidence 543
No 343
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=90.35 E-value=0.89 Score=53.42 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=51.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----CCCCH------HHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQNV-----DSLDF------DKLQ 255 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~------~~~~ 255 (1446)
++|.|..|+|||||+.++....... +=+.++++-+++.. .+.++.+++...-...... ..... ....
T Consensus 147 ~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a 225 (463)
T PRK09280 147 IGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTG 225 (463)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 4789999999999999887532211 11356777776554 4666777666532211100 01111 1122
Q ss_pred HHHHHHc---CCceEEEEEECC
Q 042296 256 VELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 256 ~~l~~~l---~~~~~LlVlDdv 274 (1446)
..+.+++ +++.+|+++||+
T Consensus 226 ~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 226 LTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHhcCCceEEEecch
Confidence 3345555 679999999998
No 344
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=90.24 E-value=0.61 Score=58.46 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=54.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|.+|+||||||.+++.. ....=..++|++....++. ..+++++.+... .+...+.....+.+.+
T Consensus 62 iteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 62 VIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 3459999999999999886652 2233356799998887774 366677654321 2334555556666655
Q ss_pred C-CceEEEEEECCC
Q 042296 263 S-QKKFLLVLDDVW 275 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~ 275 (1446)
+ ++--|||+|.+-
T Consensus 135 ~~~~~~LVVIDSI~ 148 (790)
T PRK09519 135 RSGALDIVVIDSVA 148 (790)
T ss_pred hcCCCeEEEEcchh
Confidence 4 456789999984
No 345
>PRK03839 putative kinase; Provisional
Probab=90.22 E-value=0.16 Score=52.68 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.9
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|+|++|+||||+|+.+++.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999873
No 346
>PRK00625 shikimate kinase; Provisional
Probab=90.20 E-value=0.17 Score=51.49 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=18.2
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.++||+|+||||+|+.+.+
T Consensus 3 I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999987
No 347
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=90.14 E-value=0.27 Score=47.53 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=30.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTD 243 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 243 (1446)
+.|-|.+|+||||+|+.++.+--.. .| +.-.++++|+++.+..
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 5788999999999999998743221 11 2335778888877654
No 348
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.14 E-value=0.15 Score=28.95 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=11.4
Q ss_pred ceeEEEEeCCCCccccC
Q 042296 571 HRLKVFSLCGYQISELP 587 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp 587 (1446)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36899999999998876
No 349
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=90.12 E-value=0.18 Score=46.73 Aligned_cols=20 Identities=45% Similarity=0.723 Sum_probs=17.9
Q ss_pred eeEccCCchHHHHHHHHHcc
Q 042296 189 KVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~ 208 (1446)
-|+|.+|+|||++|+.++.+
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 48999999999999998873
No 350
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=90.05 E-value=0.16 Score=51.70 Aligned_cols=37 Identities=27% Similarity=0.151 Sum_probs=25.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchh-ccCCceEEEEeCCC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQ-DHFDLKAWTCVSED 226 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 226 (1446)
.-++|+.|+|||.+|+.++. .+. +.....+-++++.-
T Consensus 6 ~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGH
T ss_pred EEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcc
Confidence 35789999999999999987 333 33344555555543
No 351
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.04 E-value=0.84 Score=46.90 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|.|||||++.++.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999986
No 352
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.01 E-value=3 Score=46.75 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=26.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRI 232 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 232 (1446)
.+-|.|.+|+||||+|+.++. +.... .+.|..+...+..++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 356889999999999999987 33322 234555544444333
No 353
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=90.00 E-value=0.57 Score=55.21 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=53.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----CCCCH------HHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQNV-----DSLDF------DKLQ 255 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~------~~~~ 255 (1446)
++|.|.+|+|||||+.++.+... +.+-+.++++-+++.. .+.++..++...-...... ..... ....
T Consensus 146 ~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a 224 (461)
T PRK12597 146 TGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTG 224 (461)
T ss_pred EEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHH
Confidence 47899999999999998887432 2345777888777654 4566666665432211100 01111 1122
Q ss_pred HHHHHHc---CCceEEEEEECC
Q 042296 256 VELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 256 ~~l~~~l---~~~~~LlVlDdv 274 (1446)
..+.+++ +++++|+++||+
T Consensus 225 ~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 225 LTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHhcCCceEEEeccc
Confidence 3344554 389999999999
No 354
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.98 E-value=0.61 Score=46.95 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=17.7
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+-+.|.+|+||||+|++++.
T Consensus 4 iIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred EEEecCCCCCchHHHHHHHH
Confidence 35679999999999999987
No 355
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=89.97 E-value=2.6 Score=46.21 Aligned_cols=145 Identities=20% Similarity=0.195 Sum_probs=73.0
Q ss_pred cceeEccCCchHHHHHHHHHcc-cchhccCCceEEEEeCCCCC-----HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND-ARLQDHFDLKAWTCVSEDFD-----ITRITKSILNSIGTDQNVDSLDFDKLQVELKK 260 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 260 (1446)
.+.|+|+.|.|||+|...+..+ .+++++| .-|....... +..+.+++..++..... ...+..+-...+-+
T Consensus 51 sviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k-~~gsfte~l~~lL~ 126 (408)
T KOG2228|consen 51 SVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGITRQLALELNRIVK-SFGSFTENLSKLLE 126 (408)
T ss_pred ceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHHHHHHHHHhhhhe-eecccchhHHHHHH
Confidence 4578999999999998877765 1233333 3344433322 33344444433332221 22233333334444
Q ss_pred HcC------CceEEEEEECCCCCC----hhhHHHhccccc-CCCCCcEEEEEccChH-------HHHhhCCCCceecCCC
Q 042296 261 QLS------QKKFLLVLDDVWNEN----YNDWIDLSRPFE-AGAPGSKIVVTTRNQA-------VVAIMGTVPAYPLKEL 322 (1446)
Q Consensus 261 ~l~------~~~~LlVlDdv~~~~----~~~~~~~~~~l~-~~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L 322 (1446)
.|+ +-++..|+|..+-.- +.-.-.+...-. ...|-+-|-+|||-.. |-..+.-..++-++.+
T Consensus 127 ~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~ 206 (408)
T KOG2228|consen 127 ALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSL 206 (408)
T ss_pred HHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCC
Confidence 442 346788887764320 000111111111 1345667789999532 2222333335666777
Q ss_pred ChHhHHHHHHhhc
Q 042296 323 SDEDCLNVFTQHS 335 (1446)
Q Consensus 323 ~~~~~~~lf~~~a 335 (1446)
+-++..++++...
T Consensus 207 ~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 207 PLGDYVDLYRKLL 219 (408)
T ss_pred ChHHHHHHHHHHh
Confidence 7777777777654
No 356
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.96 E-value=0.62 Score=54.75 Aligned_cols=152 Identities=16% Similarity=0.243 Sum_probs=81.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-+||++|+|||-||++|+| +.+..| ++|-.+ +++...-+ ..+.......++.-..-++
T Consensus 548 vLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVG------ESErAVR~vFqRAR~saPC 606 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVG------ESERAVRQVFQRARASAPC 606 (802)
T ss_pred eEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhh------hHHHHHHHHHHHhhcCCCe
Confidence 45789999999999999999 444444 444332 22222211 1222233333333356899
Q ss_pred EEEEECCCCC-----ChhhH------HHhcccccC--CCCCcEEEEEccChHHHHh--hCC---CCceecCCCChHhHHH
Q 042296 268 LLVLDDVWNE-----NYNDW------IDLSRPFEA--GAPGSKIVVTTRNQAVVAI--MGT---VPAYPLKELSDEDCLN 329 (1446)
Q Consensus 268 LlVlDdv~~~-----~~~~~------~~~~~~l~~--~~~gs~iivTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~ 329 (1446)
.|.||.++.- +...| .++..-+.. ...|.-||-.|..+++... ... ....-|..-+.+|-.+
T Consensus 607 VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 607 VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 9999998542 00111 222222222 2356777777766665432 122 2345556667777788
Q ss_pred HHHhhccCCCC-CCCChhHHHHHHHHHHHhCCch
Q 042296 330 VFTQHSLGTRD-FNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 330 lf~~~a~~~~~-~~~~~~~~~~~~~i~~~c~glP 362 (1446)
+++...-.... ....-.++++|+. .+|.|..
T Consensus 687 ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 687 ILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88776632111 1223345565543 3566654
No 357
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=89.95 E-value=1.9 Score=43.11 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.2
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.+.|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 357899999999999998873
No 358
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=89.80 E-value=0.85 Score=48.78 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-hhhccCChHHHHHHHHHHHHHHhhHhhHHHHH
Q 042296 33 QILADLMKWKKMLMKINVVLDDA-DERQRTDKSVKLWLGELQNLAYDVEDLLDEFE 87 (1446)
Q Consensus 33 ~~~~~~~~l~~~l~~i~~~l~~a-~~~~~~~~~~~~wl~~lr~~~yd~eD~ld~~~ 87 (1446)
-++.+++-++.+++.+|.||+.. ++.+..-.....++.++-+.||++|+++|-..
T Consensus 318 flKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 318 FLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 35789999999999999999986 44343334489999999999999999999763
No 359
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.74 E-value=0.71 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|.|||||++.++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 568999999999999999985
No 360
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=2.3 Score=44.16 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCceEEEEEECCCCC-ChhhHHHhc---ccccCCCCCcEEEEEccChHHHHhhCCCCce
Q 042296 253 KLQVELKKQLSQKKFLLVLDDVWNE-NYNDWIDLS---RPFEAGAPGSKIVVTTRNQAVVAIMGTVPAY 317 (1446)
Q Consensus 253 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~~~---~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~ 317 (1446)
.....+.+.+-=++=+.|||..++- +.+....+. ..+. .+|+-++|.|-.+.++....+..++
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3344555555567789999998664 112222222 2232 3577888889889999887665544
No 361
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=89.71 E-value=0.36 Score=47.43 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=48.4
Q ss_pred ceeEccCCchHHHHHHHHHcccch-hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARL-QDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
+-|+|-.|+||+++|+.++..... ...|..+ ..... . .+++++ .+.
T Consensus 24 vli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~~------------------------a~~ 70 (138)
T PF14532_consen 24 VLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLEQ------------------------AKG 70 (138)
T ss_dssp EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHHH------------------------CTT
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHHH------------------------cCC
Confidence 468999999999999988864221 1122111 00000 0 111111 134
Q ss_pred EEEEEECCCCCChhhHHHhcccccCC-CCCcEEEEEccCh
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAG-APGSKIVVTTRNQ 305 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~-~~gs~iivTtR~~ 305 (1446)
--++++|+..-.......+...+... ....|+|.||+..
T Consensus 71 gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 71 GTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp SEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 45789999776655555665555432 4678999999754
No 362
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=89.63 E-value=0.64 Score=51.17 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.5
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.++|.+|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999863
No 363
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=89.54 E-value=1 Score=52.40 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=49.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----CCCCH------HHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQNV-----DSLDF------DKLQ 255 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~------~~~~ 255 (1446)
++|+|..|+|||||++.++... ..+.++.+-+++.. .+.++.++++..-+..... ..... ....
T Consensus 165 igI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A 240 (444)
T PRK08972 165 MGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETA 240 (444)
T ss_pred EEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHH
Confidence 4788999999999999998632 22556666676654 3455666654432211100 00111 1112
Q ss_pred HHHHHHc--CCceEEEEEECC
Q 042296 256 VELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 256 ~~l~~~l--~~~~~LlVlDdv 274 (1446)
..+.+++ +++++|+++||+
T Consensus 241 ~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 241 TTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHcCCCEEEEEcCh
Confidence 2233444 589999999998
No 364
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=89.53 E-value=0.19 Score=51.16 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=19.6
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|-||-|+||||||+.+.++
T Consensus 6 ~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 6 VIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred EEEEecccccCHHHHHHHHHHH
Confidence 5678899999999999999984
No 365
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.46 E-value=1.1 Score=56.16 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=51.3
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFD--ITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
+++.++|..|+||||++.+++........-..+..++.. .+. ..+.++...+.++.+.. ...+.+++...+.+ ++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-LG 262 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-hc
Confidence 367899999999999998888632111111345555543 333 44556666666665443 33456666555553 44
Q ss_pred CceEEEEEECCC
Q 042296 264 QKKFLLVLDDVW 275 (1446)
Q Consensus 264 ~~~~LlVlDdv~ 275 (1446)
++ =+|++|=.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 377777764
No 366
>PRK08149 ATP synthase SpaL; Validated
Probab=89.39 E-value=0.8 Score=53.48 Aligned_cols=84 Identities=17% Similarity=0.276 Sum_probs=48.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCC-------CCCCC----CHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-FDITRITKSILNSIGTDQ-------NVDSL----DFDKL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~-------~~~~~----~~~~~ 254 (1446)
.++|+|..|+|||||++.++.... -+.++...+... .++.++..+......... ..++. .....
T Consensus 153 ~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~ 228 (428)
T PRK08149 153 RMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALV 228 (428)
T ss_pred EEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHH
Confidence 357899999999999999987322 233334444433 356666666665432111 00110 01112
Q ss_pred HHHHHHHc--CCceEEEEEECC
Q 042296 255 QVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l--~~~~~LlVlDdv 274 (1446)
...+.+++ ++|++|+++||+
T Consensus 229 a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 229 ATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHcCCCEEEEccch
Confidence 22233333 589999999998
No 367
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=89.37 E-value=1.2 Score=41.91 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=18.3
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.+.|.||+||||++..+++.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999998873
No 368
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=89.34 E-value=0.41 Score=45.40 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=38.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
+-|.|-+|+||||+|.+++... ..-|+++|+-..-..+....=++. .-...+.+.+.+.+.-.+.+.
T Consensus 10 ILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~gyDE~y----~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYEGYDEEY----KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchhcccccc----cCccccHHHHHHHHHHHHhcC
Confidence 4688999999999999998521 134777765433222222221111 113345666666666665443
No 369
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.29 E-value=2 Score=47.23 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=47.5
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC-
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS- 263 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~- 263 (1446)
+.+.++|.+|+||||+++.+... ....=..+.+++..... ....-++...+.++.+.. ...+.+.+...+...-+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHHhc
Confidence 46689999999999999988753 22211235555554221 122222333333433221 22345555544443322
Q ss_pred CceEEEEEECCCCC
Q 042296 264 QKKFLLVLDDVWNE 277 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~ 277 (1446)
++.=++++|..-..
T Consensus 153 ~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 153 ARVDYILIDTAGKN 166 (270)
T ss_pred CCCCEEEEECCCCC
Confidence 34568889987443
No 370
>PRK07004 replicative DNA helicase; Provisional
Probab=89.28 E-value=8.4 Score=46.40 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=34.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIG 241 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 241 (1446)
.+.|-|.+|+|||++|..++.+.-.+... .++|+ |-+-+..++...++....
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~-~v~~f--SlEM~~~ql~~R~la~~~ 266 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGL-PVAVF--SMEMPGTQLAMRMLGSVG 266 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCC-eEEEE--eCCCCHHHHHHHHHHhhc
Confidence 45678999999999999887643222222 34454 445567778788776543
No 371
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.21 E-value=1.4 Score=51.61 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=44.2
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
+.++++|..|+||||++..+.........-+.+.++.... .....+-+....+.++.+.. ...+..+....+. .+++
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~-~v~~~~dl~~al~-~l~~ 269 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR-SIKDIADLQLMLH-ELRG 269 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-cCCCHHHHHHHHH-HhcC
Confidence 3678999999999999988775211112223444444332 12233334445555554432 2334444433333 2343
Q ss_pred ceEEEEEECC
Q 042296 265 KKFLLVLDDV 274 (1446)
Q Consensus 265 ~~~LlVlDdv 274 (1446)
+ -++++|-.
T Consensus 270 ~-d~VLIDTa 278 (420)
T PRK14721 270 K-HMVLIDTV 278 (420)
T ss_pred C-CEEEecCC
Confidence 3 34556665
No 372
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=89.19 E-value=1.6 Score=45.85 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.3
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.+.|.|..|.||||+.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 4668999999999999999875
No 373
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.15 E-value=0.37 Score=47.56 Aligned_cols=33 Identities=30% Similarity=0.174 Sum_probs=23.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTC 222 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 222 (1446)
+-+.|.+|+||||||+++.. +....-..+.+++
T Consensus 5 IwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 45679999999999999998 4444444555554
No 374
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=5.7 Score=45.76 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=38.6
Q ss_pred EEE-EEccChHHHHh--h--CCCC-ceecCCCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHh
Q 042296 297 KIV-VTTRNQAVVAI--M--GTVP-AYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGG 370 (1446)
Q Consensus 297 ~ii-vTtR~~~v~~~--~--~~~~-~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 370 (1446)
||| .||-..+-... + |.+. .+.+.-=+.+....||.++..... + ..++.+|.+...|--+.-..++.
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~----h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---D----HRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---C----cchhHHHHHHhhcCccCHHHHHH
Confidence 555 57765443321 2 2222 356666677777778887763321 2 23455566666666555555555
Q ss_pred hhcCC
Q 042296 371 LLRGK 375 (1446)
Q Consensus 371 ~L~~~ 375 (1446)
.|-.+
T Consensus 412 ~lm~~ 416 (457)
T KOG0743|consen 412 ELMKN 416 (457)
T ss_pred HHhhc
Confidence 55444
No 375
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=89.11 E-value=3 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.6
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|.|.=|+||||+.+.+.+.
T Consensus 22 ~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 22 VIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998874
No 376
>PRK05480 uridine/cytidine kinase; Provisional
Probab=89.10 E-value=0.22 Score=53.08 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.9
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|.|.+|+||||||+.++..
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999873
No 377
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.09 E-value=0.23 Score=52.90 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.8
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..++|+|.+|+||||||+.++.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999986
No 378
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=4.2 Score=50.46 Aligned_cols=154 Identities=13% Similarity=0.118 Sum_probs=84.8
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc-CC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL-SQ 264 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~ 264 (1446)
+.+-++|++|.|||-||++++-... +=|++++.. +..+.+.+.. ...+..+...- +.
T Consensus 345 kGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS--------EFvE~~~g~~-------asrvr~lf~~ar~~ 402 (774)
T KOG0731|consen 345 KGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS--------EFVEMFVGVG-------ASRVRDLFPLARKN 402 (774)
T ss_pred CceEEECCCCCcHHHHHHHHhcccC-------CceeeechH--------HHHHHhcccc-------hHHHHHHHHHhhcc
Confidence 3556899999999999999998432 334555432 2222222111 11222222222 35
Q ss_pred ceEEEEEECCCCCC---------------hhhHHHhcccccCCCC--CcEEEEEccChHHHHhh----C-CCCceecCCC
Q 042296 265 KKFLLVLDDVWNEN---------------YNDWIDLSRPFEAGAP--GSKIVVTTRNQAVVAIM----G-TVPAYPLKEL 322 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~---------------~~~~~~~~~~l~~~~~--gs~iivTtR~~~v~~~~----~-~~~~~~l~~L 322 (1446)
.++.|.+|+++... ...+.++..-+..+.. +--++-+|+..++.... | -.+.+.+..-
T Consensus 403 aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p 482 (774)
T KOG0731|consen 403 APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLP 482 (774)
T ss_pred CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCC
Confidence 67788888764310 1122333333333222 33344466666554321 2 2356778877
Q ss_pred ChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHH
Q 042296 323 SDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 323 ~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
+...-.++|..++-.-. ...+..++++ |+...-|.+=|.
T Consensus 483 ~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 483 DVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred chhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHHH
Confidence 88888899998874322 2234456666 888888887554
No 379
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.07 E-value=8.5 Score=46.18 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=35.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIG 241 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 241 (1446)
.+.|.|.+|+|||++|..++.+.-.+.. ..++|++. +.+..++...++....
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fSl--Em~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREG-KPVLFFSL--EMSAEQLGERLLASKS 247 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEEC--CCCHHHHHHHHHHHHc
Confidence 4568899999999999999854322222 34666654 3467777777776543
No 380
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.04 E-value=1.6 Score=44.38 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=17.5
Q ss_pred eeEccCCchHHHHHHHHHc
Q 042296 189 KVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+.|+||||+|+.+..
T Consensus 2 ~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAH 20 (163)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 5889999999999999887
No 381
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=88.93 E-value=0.53 Score=50.06 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccccccccccceeEccCCchHHHHHHHHHcc
Q 042296 138 DYTIMSKIKEINARFQDIVSQKDLLDFKENSVGRSRKVRQRRETTSLVNEAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 138 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.+.++|..+++.++.+.+.+...+.. ...+....+.|+|.+|+|||||.+.+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 8 RRLIRERIAKLRRELEKVKKQRELQRRR--------------RKRSGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHh--------------hhhcCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3567778888888888877654322110 01122335689999999999999998875
No 382
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.91 E-value=0.28 Score=62.21 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=47.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHHHcCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLD-FDKLQVELKKQLSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~~ 266 (1446)
+-++|+.|+|||++|+.++.. .. ...+.+++++-.+.. .+..-+|.+......+ ...+...++ +...
T Consensus 491 ~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~----~~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~ 558 (758)
T PRK11034 491 FLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH----TVSRLIGAPPGYVGFDQGGLLTDAVI---KHPH 558 (758)
T ss_pred EEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----cHHHHcCCCCCcccccccchHHHHHH---hCCC
Confidence 457899999999999999873 22 123344443321111 1111223221101111 112222222 2344
Q ss_pred EEEEEECCCCCChhhHHHhccccc
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFE 290 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~ 290 (1446)
-+|+||++...+.+.+..+...+.
T Consensus 559 sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 559 AVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred cEEEeccHhhhhHHHHHHHHHHHh
Confidence 699999998877666666655443
No 383
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.82 E-value=2.6 Score=55.03 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
-+.++|.+|+||||+|+.++..
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999873
No 384
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.80 E-value=1.5 Score=56.75 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=73.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|.+|+||||+|+.+++. .... ++.++.. ++ .... .......+...+........
T Consensus 214 giLL~GppGtGKT~laraia~~--~~~~-----~i~i~~~----~i----~~~~------~g~~~~~l~~lf~~a~~~~p 272 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANE--AGAY-----FISINGP----EI----MSKY------YGESEERLREIFKEAEENAP 272 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHH--hCCe-----EEEEecH----HH----hccc------ccHHHHHHHHHHHHHHhcCC
Confidence 3568999999999999999873 3222 2333211 11 1110 01112223333333345567
Q ss_pred EEEEEECCCCCC-----------hhhHHHhcccccCC-CCCcEEEE-EccChH-HHHhhC----CCCceecCCCChHhHH
Q 042296 267 FLLVLDDVWNEN-----------YNDWIDLSRPFEAG-APGSKIVV-TTRNQA-VVAIMG----TVPAYPLKELSDEDCL 328 (1446)
Q Consensus 267 ~LlVlDdv~~~~-----------~~~~~~~~~~l~~~-~~gs~iiv-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~ 328 (1446)
.+|++|+++... ......+...+... ..+..++| ||...+ +...+. -...+.+...+.++-.
T Consensus 273 ~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~ 352 (733)
T TIGR01243 273 SIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARK 352 (733)
T ss_pred cEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHH
Confidence 899999984320 00111222222211 12333444 554432 111111 1235777777888888
Q ss_pred HHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchh
Q 042296 329 NVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPL 363 (1446)
Q Consensus 329 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPl 363 (1446)
+++..+.-... .... .....+++.+.|..-
T Consensus 353 ~Il~~~~~~~~-l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 353 EILKVHTRNMP-LAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred HHHHHHhcCCC-Cccc----cCHHHHHHhCCCCCH
Confidence 88875542211 1111 124557777777653
No 385
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.79 E-value=0.88 Score=50.44 Aligned_cols=76 Identities=17% Similarity=0.087 Sum_probs=39.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF--DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
.++|.|..|+||||+|+.+.. ...... ..+..++...-....+.....- .+......+..+.+.+...+.....+
T Consensus 64 IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~Lk~g 140 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSDLKSG 140 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHHHHCC
Confidence 679999999999999987754 222111 1234444433222222222210 01111122556677777777766555
Q ss_pred c
Q 042296 265 K 265 (1446)
Q Consensus 265 ~ 265 (1446)
+
T Consensus 141 ~ 141 (290)
T TIGR00554 141 K 141 (290)
T ss_pred C
Confidence 4
No 386
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.76 E-value=0.88 Score=45.89 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=58.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF--DITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
..+|+|..|.|||||++.+.... ....+.+++.-.... ...+. ...++.-.. -..-+...-.+...+..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q--lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ--LSGGQRQRVALARALLL 97 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEee--CCHHHHHHHHHHHHHhc
Confidence 56899999999999999998732 223444444322111 11111 111111000 11112222334555556
Q ss_pred ceEEEEEECCCCC-ChhhHHHhcccccCC-CCCcEEEEEccChHHHHhh
Q 042296 265 KKFLLVLDDVWNE-NYNDWIDLSRPFEAG-APGSKIVVTTRNQAVVAIM 311 (1446)
Q Consensus 265 ~~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~~ 311 (1446)
+.-++++|..-.. +......+...+... ..+..|+++|.+.+.....
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 6788999997432 112222232222211 1256788888887665553
No 387
>PRK04328 hypothetical protein; Provisional
Probab=88.74 E-value=0.82 Score=50.07 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=27.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED 226 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 226 (1446)
.+-|.|.+|+|||++|.++... .-..-..++|++..+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 3468899999999999987653 2223456788887664
No 388
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.73 E-value=1.3 Score=46.61 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=25.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC--------CceEEEEeCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF--------DLKAWTCVSED 226 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 226 (1446)
...|+|.+|+||||++..+.........| ..++|+.....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 35688999999999998887643322222 26777776655
No 389
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.69 E-value=0.63 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.6
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+||||+|+.++..
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999873
No 390
>PRK06547 hypothetical protein; Provisional
Probab=88.56 E-value=0.27 Score=50.04 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|.|.+|+||||+|+.+...
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5688899999999999999863
No 391
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.48 E-value=1.2 Score=46.27 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=53.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-+||--|.||++|++++.+ .+....-. -|.|.+. +..+...+.+.++. ..+|
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--------------------dl~~Lp~l~~~Lr~--~~~k 140 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--------------------DLATLPDLVELLRA--RPEK 140 (287)
T ss_pred ceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--------------------HHhhHHHHHHHHhc--CCce
Confidence 346899999999999999988 44444322 3444322 11222333333333 3689
Q ss_pred EEEEEECCCCCC-hhhHHHhcccccCC---CCCcEEEEEccC
Q 042296 267 FLLVLDDVWNEN-YNDWIDLSRPFEAG---APGSKIVVTTRN 304 (1446)
Q Consensus 267 ~LlVlDdv~~~~-~~~~~~~~~~l~~~---~~gs~iivTtR~ 304 (1446)
|.|..||..-++ ...+..++..+..+ .+...++..|.+
T Consensus 141 FIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 141 FILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred EEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 999999985433 34455666666543 233344444443
No 392
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.44 E-value=0.49 Score=50.34 Aligned_cols=121 Identities=14% Similarity=0.160 Sum_probs=57.9
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--CCCCHHHHHHHHHHH--
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV--DSLDFDKLQVELKKQ-- 261 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~-- 261 (1446)
+.+.|+|.-|.||||+.+.+...... .+-.. |+.+.. .. .....++...++..... .......-.+++...
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~--~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~ 104 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGS--FVPADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALR 104 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCC--eeEcCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHH
Confidence 45679999999999999998742111 11111 121111 00 01112222223222110 001111112222222
Q ss_pred cCCceEEEEEECCCCCC-hhhH----HHhcccccCC-CCCcEEEEEccChHHHHhh
Q 042296 262 LSQKKFLLVLDDVWNEN-YNDW----IDLSRPFEAG-APGSKIVVTTRNQAVVAIM 311 (1446)
Q Consensus 262 l~~~~~LlVlDdv~~~~-~~~~----~~~~~~l~~~-~~gs~iivTtR~~~v~~~~ 311 (1446)
+..++.|+++|..-... ..+. ..+...+... ..+..+|+||-+.+++...
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 24678999999985431 1121 1223333222 2245899999998877664
No 393
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=88.41 E-value=0.77 Score=53.53 Aligned_cols=88 Identities=17% Similarity=0.331 Sum_probs=53.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc--cCC---------ceEEEEeCCCCCHHHHHHHHHHHhc-CCCCC------CC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD--HFD---------LKAWTCVSEDFDITRITKSILNSIG-TDQNV------DS 248 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~~------~~ 248 (1446)
-++|.|-.|+|||||+.++.+..+... ..| .++++-+++.....+.+.+.+.+-+ ..... +.
T Consensus 143 RigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~ 222 (466)
T TIGR01040 143 KIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAND 222 (466)
T ss_pred eeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCC
Confidence 357899999999999999887543100 012 5677778877677776666666554 21110 00
Q ss_pred CCH-----HHHHHHHHHHcC---CceEEEEEECC
Q 042296 249 LDF-----DKLQVELKKQLS---QKKFLLVLDDV 274 (1446)
Q Consensus 249 ~~~-----~~~~~~l~~~l~---~~~~LlVlDdv 274 (1446)
... ......+.++++ ++++|+++||+
T Consensus 223 p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 223 PTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 011 112223445543 69999999998
No 394
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.36 E-value=0.53 Score=49.56 Aligned_cols=121 Identities=16% Similarity=0.173 Sum_probs=60.8
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHc-
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVD--SLDFDKLQVELKKQL- 262 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~l~~~l- 262 (1446)
+...|.|..|.||||+.+.++... +..+. ..+|.+.. .. -.+.+.|...++..+... ......-..++...+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence 356899999999999999887431 11111 11222111 11 122333444443322100 001111111222222
Q ss_pred -CCceEEEEEECCCCC-Chhh----HHHhcccccCCCCCcEEEEEccChHHHHhhCC
Q 042296 263 -SQKKFLLVLDDVWNE-NYND----WIDLSRPFEAGAPGSKIVVTTRNQAVVAIMGT 313 (1446)
Q Consensus 263 -~~~~~LlVlDdv~~~-~~~~----~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~ 313 (1446)
..++-|+++|..-.. +..+ ...+...+.. .|+.+|++|-+.+++..+..
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 356789999997432 1122 1223333333 38899999999988877654
No 395
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.21 E-value=1.3 Score=48.07 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=26.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED 226 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 226 (1446)
.+.|.|.+|+||||+|.++.... -..-..++|++....
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEES 59 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 45789999999999999876521 122356788887443
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=88.21 E-value=0.58 Score=48.43 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=30.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhcc-CCceEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDH-FDLKAWTCVSEDFDITRITKSILNSIGTDQ 244 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 244 (1446)
.++|+|-||+||||+|..+.... ..++ |+ +.-|+...+++. ..++|...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~~-VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGYN-VLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCce-EEEEeCCCCCCh-------HHhcCCCC
Confidence 36799999999999998855421 2222 33 455666665544 44566554
No 397
>PRK13947 shikimate kinase; Provisional
Probab=88.19 E-value=0.28 Score=50.41 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=18.5
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|+|++|+||||+|+.+.+
T Consensus 4 I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999987
No 398
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=88.16 E-value=2.2 Score=47.95 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=33.5
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSIL 237 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~ 237 (1446)
.+|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.+++.++-
T Consensus 160 ~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 160 AAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred EEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 4688999999999999999843 33567788887654 4555666543
No 399
>PRK06696 uridine kinase; Validated
Probab=88.16 E-value=0.28 Score=52.84 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.6
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|.+|+||||+|+.+..
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAE 44 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999987
No 400
>PRK00279 adk adenylate kinase; Reviewed
Probab=88.14 E-value=1.4 Score=47.20 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.0
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|+|++|+||||+|+.++.
T Consensus 3 I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999876
No 401
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=88.13 E-value=0.69 Score=54.20 Aligned_cols=86 Identities=15% Similarity=0.263 Sum_probs=52.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCC-----CCCCCH------HHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQN-----VDSLDF------DKLQ 255 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~------~~~~ 255 (1446)
.+|.|.+|+|||+|+.++..... +.+-+.++++-+++.. .+.++.+++...-..... ...... ....
T Consensus 141 ~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a 219 (449)
T TIGR03305 141 AGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTA 219 (449)
T ss_pred EEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHH
Confidence 47899999999999999887532 2334778888887665 355666665543111100 001111 1122
Q ss_pred HHHHHHc---CCceEEEEEECC
Q 042296 256 VELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 256 ~~l~~~l---~~~~~LlVlDdv 274 (1446)
..+.+++ +++++|+++||+
T Consensus 220 ~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 220 LTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHhcCCceEEEecCh
Confidence 3344554 468999999998
No 402
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=88.13 E-value=3 Score=52.68 Aligned_cols=127 Identities=12% Similarity=0.147 Sum_probs=67.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|.+|.||||+|+.++.. ....| +.++.. ++. .... ..........+...-...+.
T Consensus 188 ill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~~~----~~~~------g~~~~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----DFV----EMFV------GVGASRVRDMFEQAKKAAPC 246 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----HhH----Hhhh------cccHHHHHHHHHHHHhcCCc
Confidence 678999999999999999873 22222 222211 111 1110 01122233333333345678
Q ss_pred EEEEECCCCCC----------hhhHHH----hcccccC--CCCCcEEEEEccChHHHHhh--C---CCCceecCCCChHh
Q 042296 268 LLVLDDVWNEN----------YNDWID----LSRPFEA--GAPGSKIVVTTRNQAVVAIM--G---TVPAYPLKELSDED 326 (1446)
Q Consensus 268 LlVlDdv~~~~----------~~~~~~----~~~~l~~--~~~gs~iivTtR~~~v~~~~--~---~~~~~~l~~L~~~~ 326 (1446)
+|++|+++.-. ...+.. +...+.. ...+.-||.||..++..... . -.+.+.+...+.++
T Consensus 247 IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 99999985420 011211 1111111 12345566688776543321 1 12457788778777
Q ss_pred HHHHHHhhc
Q 042296 327 CLNVFTQHS 335 (1446)
Q Consensus 327 ~~~lf~~~a 335 (1446)
-.+++..+.
T Consensus 327 R~~Il~~~~ 335 (644)
T PRK10733 327 REQILKVHM 335 (644)
T ss_pred HHHHHHHHh
Confidence 788887765
No 403
>PRK05439 pantothenate kinase; Provisional
Probab=88.00 E-value=1.2 Score=49.77 Aligned_cols=77 Identities=17% Similarity=0.048 Sum_probs=41.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF--DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
.++|.|.+|+||||+|+.+.. ...... ..+.-++...=+-..+.+..- ..+.....++..+.+.+...+....++
T Consensus 88 iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~Lk~G 164 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDVKSG 164 (311)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHHHcC
Confidence 679999999999999998876 232221 234444443322222222110 011111112456777777777776666
Q ss_pred ce
Q 042296 265 KK 266 (1446)
Q Consensus 265 ~~ 266 (1446)
+.
T Consensus 165 ~~ 166 (311)
T PRK05439 165 KP 166 (311)
T ss_pred CC
Confidence 64
No 404
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.00 E-value=2.7 Score=48.76 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=20.9
Q ss_pred cccceeEccCCchHHHHHHHHHccc
Q 042296 185 VNEAKVYGMGGLGKTTLAQLVYNDA 209 (1446)
Q Consensus 185 ~~~~~i~G~gG~GKTtLa~~v~~~~ 209 (1446)
.+.+-++|++|.|||-||++|+-..
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhccc
Confidence 3456789999999999999999743
No 405
>PRK05973 replicative DNA helicase; Provisional
Probab=87.91 E-value=1.9 Score=46.17 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=29.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSI 236 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 236 (1446)
.+.|.|.+|+|||++|.++.... .+ .=..+++++.... ..++...+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~-a~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEA-MK-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEEeCC--HHHHHHHH
Confidence 45688999999999999887632 12 2235667666544 44444443
No 406
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=87.91 E-value=1.7 Score=50.88 Aligned_cols=84 Identities=18% Similarity=0.311 Sum_probs=48.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----CCCC-H-----HHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQNV-----DSLD-F-----DKL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~-----~~~~-~-----~~~ 254 (1446)
..+|+|..|+|||||++.+++... -+.++++-+++.. .+.++..+.+..-+..... .... . ...
T Consensus 160 ri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~ 235 (442)
T PRK08927 160 RMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYL 235 (442)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHH
Confidence 347889999999999999987422 2445556666554 3455555555432211100 0011 1 111
Q ss_pred HHHHHHHc--CCceEEEEEECC
Q 042296 255 QVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l--~~~~~LlVlDdv 274 (1446)
...+.+++ +++.+|+++||+
T Consensus 236 a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 236 TLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHCCCcEEEEEeCc
Confidence 22234444 589999999998
No 407
>PRK04040 adenylate kinase; Provisional
Probab=87.89 E-value=0.31 Score=50.56 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|++|+||||+++.+..
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 468999999999999999987
No 408
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=87.77 E-value=0.79 Score=46.48 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.8
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+-|+|-.|+||+.+|+.+++.
T Consensus 25 VlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 25 VLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEcCCCCcHHHHHHHHHHh
Confidence 469999999999999999873
No 409
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=87.75 E-value=0.33 Score=51.32 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.4
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
++|.|..|+||||+|+.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 410
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.73 E-value=0.35 Score=31.17 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=13.9
Q ss_pred CCCCceeeccCccccccCcc
Q 042296 593 LRYLRYLNLSRTCIEILPDS 612 (1446)
Q Consensus 593 L~~Lr~L~L~~~~i~~lp~~ 612 (1446)
|++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777654
No 411
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.73 E-value=0.35 Score=31.17 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=13.9
Q ss_pred CCCCceeeccCccccccCcc
Q 042296 593 LRYLRYLNLSRTCIEILPDS 612 (1446)
Q Consensus 593 L~~Lr~L~L~~~~i~~lp~~ 612 (1446)
|++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777654
No 412
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=87.69 E-value=1.2 Score=45.09 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=43.5
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHh--cCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSI--GTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
-|.|..|+|||++|.++... ....++++.-.+.+|.. ..+.|.... ............++.+.+.+. + +.
T Consensus 3 li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~~ 74 (169)
T cd00544 3 LVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-PG 74 (169)
T ss_pred EEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-CC
Confidence 47899999999999998752 22467777777777652 444443322 111111111222333333221 2 23
Q ss_pred EEEEEECC
Q 042296 267 FLLVLDDV 274 (1446)
Q Consensus 267 ~LlVlDdv 274 (1446)
-.|++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999997
No 413
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=87.68 E-value=0.34 Score=47.63 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=17.3
Q ss_pred ceeEccCCchHHHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVY 206 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~ 206 (1446)
+.|.|.+|+||||+|+.+.
T Consensus 3 I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEeCCCCCchHHHHHHHH
Confidence 5799999999999998886
No 414
>PRK07667 uridine kinase; Provisional
Probab=87.66 E-value=0.52 Score=49.39 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.5
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|.+|+||||+|+.+..
T Consensus 19 iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999987
No 415
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=87.52 E-value=2.2 Score=46.49 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=46.4
Q ss_pred cceeEccCCchHHHHH-HHHHcccchhccCCce-EEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCCCCHH----
Q 042296 187 EAKVYGMGGLGKTTLA-QLVYNDARLQDHFDLK-AWTCVSEDF-DITRITKSILNSIGTDQ-------NVDSLDFD---- 252 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~---- 252 (1446)
-..|+|..|+|||+|| ..+.+. .+-+.+ +++-+.+.. .+.++.+++...-.... ..++....
T Consensus 71 r~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 71 RELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred EEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 3479999999999996 556542 123444 566666654 45566666554321110 00111111
Q ss_pred HHHHHHHHHc--CCceEEEEEECC
Q 042296 253 KLQVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 253 ~~~~~l~~~l--~~~~~LlVlDdv 274 (1446)
.....+.+++ +++.+|+|+||+
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCh
Confidence 0112233333 589999999998
No 416
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=87.52 E-value=0.2 Score=49.79 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=20.8
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF 215 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F 215 (1446)
+.++||.|+||||+.+.+++ ...-.|
T Consensus 5 IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 46899999999999999987 334444
No 417
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=87.48 E-value=2.5 Score=47.88 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=48.0
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHcCC
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l~~ 264 (1446)
-|-|-+|+|||||..+++. +..+.- .+.+|+-.+. ..+ .+--+++++..... ...+.+++...+.+ .
T Consensus 97 LIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~---~ 167 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ---E 167 (456)
T ss_pred EEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHh---c
Confidence 3559999999999999987 333333 5777665544 322 23345666644321 22344444444443 6
Q ss_pred ceEEEEEECCC
Q 042296 265 KKFLLVLDDVW 275 (1446)
Q Consensus 265 ~~~LlVlDdv~ 275 (1446)
+.-++|+|-+.
T Consensus 168 ~p~lvVIDSIQ 178 (456)
T COG1066 168 KPDLVVIDSIQ 178 (456)
T ss_pred CCCEEEEeccc
Confidence 88899999984
No 418
>PRK13949 shikimate kinase; Provisional
Probab=87.38 E-value=0.35 Score=49.22 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|+.|+||||+|+.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999873
No 419
>PRK09099 type III secretion system ATPase; Provisional
Probab=87.33 E-value=1.4 Score=51.74 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=46.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-------CCCCCH----HHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN-------VDSLDF----DKLQ 255 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------~~~~~~----~~~~ 255 (1446)
..+|.|..|+|||||++.++...... ..+++..-.+...+.++.+.+...-+.... .++.-. ....
T Consensus 165 ~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a 241 (441)
T PRK09099 165 RMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVA 241 (441)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHH
Confidence 35788999999999999998643211 234443333444555555555443221110 011000 1112
Q ss_pred HHHHHHc--CCceEEEEEECC
Q 042296 256 VELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 256 ~~l~~~l--~~~~~LlVlDdv 274 (1446)
..+.+++ +++.+|+++||+
T Consensus 242 ~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 242 TAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 2233444 589999999998
No 420
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.25 E-value=0.15 Score=53.25 Aligned_cols=150 Identities=21% Similarity=0.205 Sum_probs=86.6
Q ss_pred ccCCCCCceeeccCcccc-----ccCcccccccccceeeccCcccc----cccc-------ccccCcccceeecccCCCc
Q 042296 590 VGDLRYLRYLNLSRTCIE-----ILPDSINKLYNLHTLLLEDCDRL----KKLC-------ADMGNLIKLHHLNNSTTNS 653 (1446)
Q Consensus 590 i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~----~~lp-------~~i~~L~~L~~L~l~~~~~ 653 (1446)
+..+..+..++||+|.|. .+-..|.+-.+|+.-+++.- .. ..+| +.+-++++|+..+|+.|-+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344678899999999886 34456777889999988753 22 1223 3356778999999999976
Q ss_pred ccccCCc----ccccccccccCceEecCCC--CCChh-hhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEE
Q 042296 654 LEEMPRG----IGKLTFLQTLCNFAVGKDS--GSGLQ-DLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLL 726 (1446)
Q Consensus 654 ~~~~p~~----i~~L~~L~~L~~~~~~~~~--~~~~~-~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 726 (1446)
....|.. |++-+.|.+|....++-.+ +..+. .|.+|.. .....+.+.|+....
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~--------------------nKKaa~kp~Le~vic 164 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY--------------------NKKAADKPKLEVVIC 164 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH--------------------HhhhccCCCceEEEe
Confidence 5566654 5566677777333322211 11111 1222111 113456677777776
Q ss_pred EeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCC
Q 042296 727 QWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGT 767 (1446)
Q Consensus 727 ~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 767 (1446)
..|+..+.+ ....-..+..+.+|+.+.+..|++.
T Consensus 165 grNRlengs-------~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 165 GRNRLENGS-------KELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred ccchhccCc-------HHHHHHHHHhhcCceeEEeeecCcC
Confidence 655443211 1122233455567777777776643
No 421
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=87.22 E-value=0.36 Score=50.23 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=18.2
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|+|++|+||||+|+.++.
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999886
No 422
>PRK05922 type III secretion system ATPase; Validated
Probab=87.14 E-value=0.87 Score=53.18 Aligned_cols=84 Identities=10% Similarity=0.269 Sum_probs=46.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCC---CCCC----H----HHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-FDITRITKSILNSIGTDQNV---DSLD----F----DKL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~----~----~~~ 254 (1446)
.++|+|..|+|||||.+.+.... .-+....+-+++. ..+.+.+.+........... ...+ . ...
T Consensus 159 rigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~ 234 (434)
T PRK05922 159 RIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRA 234 (434)
T ss_pred EEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHH
Confidence 35789999999999999998732 2233344444433 23344444444332221110 0011 1 112
Q ss_pred HHHHHHHc--CCceEEEEEECC
Q 042296 255 QVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l--~~~~~LlVlDdv 274 (1446)
...+.+++ +++++|+++||+
T Consensus 235 a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 235 AMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344444 589999999999
No 423
>PRK12678 transcription termination factor Rho; Provisional
Probab=87.13 E-value=1 Score=53.42 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=45.1
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceE-EEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHHHc
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKA-WTCVSEDF-DITRITKSILNSIGTDQNVDSLD----FDKLQVELKKQL 262 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~----~~~~~~~l~~~l 262 (1446)
.|+|.+|+|||||++.+++... ..+=++.+ .+-|.+.. .+.++.+.+-.++-......+.. ...+...+.+++
T Consensus 420 LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~f 498 (672)
T PRK12678 420 LIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRL 498 (672)
T ss_pred EEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999998321 12223333 44455443 33333333311111111111111 122223344444
Q ss_pred --CCceEEEEEECC
Q 042296 263 --SQKKFLLVLDDV 274 (1446)
Q Consensus 263 --~~~~~LlVlDdv 274 (1446)
.++.+||++|++
T Consensus 499 re~G~dVlillDSl 512 (672)
T PRK12678 499 VELGKDVVVLLDSI 512 (672)
T ss_pred HHcCCCEEEEEeCc
Confidence 689999999998
No 424
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.03 E-value=4.1 Score=43.58 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|+|..|.|||||++.++..
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4689999999999999999853
No 425
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.03 E-value=0.19 Score=55.57 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=39.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|..|+|||++++....... ...| ...-+..+...+...+++ ++++-..... .....--.+|+.
T Consensus 36 vLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~-~ie~~l~k~~----------~~~~gP~~~k~l 102 (272)
T PF12775_consen 36 VLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQK-IIESKLEKRR----------GRVYGPPGGKKL 102 (272)
T ss_dssp EEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHH-CCCTTECECT----------TEEEEEESSSEE
T ss_pred EEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHH-HHhhcEEcCC----------CCCCCCCCCcEE
Confidence 46899999999999998875321 1111 123344444433333332 2211100000 000000147899
Q ss_pred EEEEECCCCCChhh
Q 042296 268 LLVLDDVWNENYND 281 (1446)
Q Consensus 268 LlVlDdv~~~~~~~ 281 (1446)
++.+||+.-+..+.
T Consensus 103 v~fiDDlN~p~~d~ 116 (272)
T PF12775_consen 103 VLFIDDLNMPQPDK 116 (272)
T ss_dssp EEEEETTT-S---T
T ss_pred EEEecccCCCCCCC
Confidence 99999996554333
No 426
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=86.97 E-value=1.5 Score=51.36 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=46.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-------CCCCCH----HHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN-------VDSLDF----DKLQ 255 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------~~~~~~----~~~~ 255 (1446)
.++|+|..|+|||||++.+....+ ....++...-.+.-.+.++.++.+..-+.... .++.-. ....
T Consensus 142 ~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a 218 (418)
T TIGR03498 142 RLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTA 218 (418)
T ss_pred EEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHH
Confidence 457899999999999999887321 12222222222333455565555443221111 011000 1112
Q ss_pred HHHHHHc--CCceEEEEEECC
Q 042296 256 VELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 256 ~~l~~~l--~~~~~LlVlDdv 274 (1446)
..+.+++ +++.+|+++||+
T Consensus 219 ~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 219 TAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 2244444 589999999998
No 427
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=86.93 E-value=1.5 Score=47.45 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|..|+|||||++.+..
T Consensus 35 iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 35 IVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 428
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=86.85 E-value=2.1 Score=48.25 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=47.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeC-CCCCHHHHHHHHHHHhcCCC-------CCCCCC----HHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVS-EDFDITRITKSILNSIGTDQ-------NVDSLD----FDKL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~-------~~~~~~----~~~~ 254 (1446)
.++|+|..|+|||||.+.+..... -+.....-+. +.-++.++......+-+... ..++.- ....
T Consensus 71 ri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~ 146 (326)
T cd01136 71 RLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYT 146 (326)
T ss_pred EEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 458999999999999999987422 1233344444 33456666655554422111 001110 0111
Q ss_pred HHHHHHHc--CCceEEEEEECC
Q 042296 255 QVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l--~~~~~LlVlDdv 274 (1446)
...+.+++ +++.+|+++||+
T Consensus 147 a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 147 ATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHcCCCeEEEeccc
Confidence 22233333 589999999998
No 429
>PRK06904 replicative DNA helicase; Validated
Probab=86.80 E-value=14 Score=44.75 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=35.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIG 241 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 241 (1446)
.+.|-|.+|+|||++|..++.+.-.+.. ..++|+ |-+.+..++...++....
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g-~~Vl~f--SlEMs~~ql~~Rlla~~s 274 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASE-KPVLVF--SLEMPAEQIMMRMLASLS 274 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcC-CeEEEE--eccCCHHHHHHHHHHhhC
Confidence 4567899999999999888764322212 245554 445677888888877654
No 430
>PRK11823 DNA repair protein RadA; Provisional
Probab=86.77 E-value=1.7 Score=51.94 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=44.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l 262 (1446)
.+-|+|.+|+|||||+.+++... ...=..++|++..+. ..++.. -+++++..... ...+.+++...+++
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~-- 154 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE-- 154 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh--
Confidence 34588999999999999998732 222235778776543 333322 24555432210 11234444443332
Q ss_pred CCceEEEEEECC
Q 042296 263 SQKKFLLVLDDV 274 (1446)
Q Consensus 263 ~~~~~LlVlDdv 274 (1446)
.+.-+||+|.+
T Consensus 155 -~~~~lVVIDSI 165 (446)
T PRK11823 155 -EKPDLVVIDSI 165 (446)
T ss_pred -hCCCEEEEech
Confidence 34557788876
No 431
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=86.71 E-value=1.7 Score=46.86 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=40.5
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC--CCHHHHHHHHHHHh--cCCCC---CCCCCHHHHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED--FDITRITKSILNSI--GTDQN---VDSLDFDKLQVELKK 260 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l--~~~~~---~~~~~~~~~~~~l~~ 260 (1446)
++|.|.+|+||||+|+.+... .+..=..++.++...- .+-...-..+.... +.... ++..+.+.+.+.++.
T Consensus 2 IgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~ 79 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRT 79 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHH
Confidence 689999999999999988762 2221112334433221 12222222222221 11111 255677777777777
Q ss_pred HcCCc
Q 042296 261 QLSQK 265 (1446)
Q Consensus 261 ~l~~~ 265 (1446)
..+++
T Consensus 80 L~~g~ 84 (277)
T cd02029 80 YGETG 84 (277)
T ss_pred HHcCC
Confidence 76654
No 432
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.64 E-value=38 Score=39.27 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=33.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED--FDITRITKSILNSIGTDQ 244 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~ 244 (1446)
++-.+|.-|.||||.|-.+++. +++ ....+-+-..+. +...+-++.+.++++.+.
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 4567899999999999888873 333 322333333333 234455666777766543
No 433
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=86.48 E-value=1.7 Score=50.98 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=61.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-------CCCCCC----HHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQ-------NVDSLD----FDKLQ 255 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------~~~~~~----~~~~~ 255 (1446)
..+|+|..|+|||||++.++..... ...++...-.+...+.++.+..+..-+... ..++.. .....
T Consensus 158 ri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a 234 (432)
T PRK06793 158 KIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLA 234 (432)
T ss_pred EEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHH
Confidence 4578999999999999999874321 122333222233566677666655432211 001111 11122
Q ss_pred HHHHHHc--CCceEEEEEECCCCCChhhHHHhcc---cccCCCCCcEEEEEccChHHHHhhC
Q 042296 256 VELKKQL--SQKKFLLVLDDVWNENYNDWIDLSR---PFEAGAPGSKIVVTTRNQAVVAIMG 312 (1446)
Q Consensus 256 ~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~~~~---~l~~~~~gs~iivTtR~~~v~~~~~ 312 (1446)
..+.+++ +++.+||++||+-.- .....++.. ..|. .|--..+.|..+.+....+
T Consensus 235 ~~iAEyfr~~G~~VLlilDslTr~-a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRF-ADARRSVDIAVKELPI--GGKTLLMESYMKKLLERSG 293 (432)
T ss_pred HHHHHHHHHcCCcEEEEecchHHH-HHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHhc
Confidence 2233333 589999999998321 111222222 1232 2555566665565555543
No 434
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=86.47 E-value=2.1 Score=45.24 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.7
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|+|..|.|||||.+.+...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998874
No 435
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=86.46 E-value=11 Score=43.49 Aligned_cols=117 Identities=9% Similarity=0.078 Sum_probs=73.6
Q ss_pred eEEEEEECCCCCC---------hhhHHHhcccccCCCCCcEEEEEccChHHHHhh----C--CCCceecCCCChHhHHHH
Q 042296 266 KFLLVLDDVWNEN---------YNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM----G--TVPAYPLKELSDEDCLNV 330 (1446)
Q Consensus 266 ~~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~----~--~~~~~~l~~L~~~~~~~l 330 (1446)
|=+||+|+.-... ..+|.... . ..+=.+||++|-+....... . ..+.+.|...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~L---v-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASL---V-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHH---H-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999974321 23455422 1 12345899999876555433 1 235688999999999999
Q ss_pred HHhhccCCCCC------------CCC----hhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChh-HHHHHHh
Q 042296 331 FTQHSLGTRDF------------NMH----KSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQR-DWEDVLN 386 (1446)
Q Consensus 331 f~~~a~~~~~~------------~~~----~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~-~w~~~l~ 386 (1446)
...+....... ... ....+-....++.+||=-.-+..+++.++...+++ .-.++..
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 98876432110 000 12333455677889999999999999999876643 3334443
No 436
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.44 E-value=1.4 Score=53.40 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=42.5
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-+||++|.|||-+|++|+.. .. ..|++|-.+ +++.-.-+ ..++.+.+...+.-..+++
T Consensus 708 ILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP--------ELLNMYVG------qSE~NVR~VFerAR~A~PC 766 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP--------ELLNMYVG------QSEENVREVFERARSAAPC 766 (953)
T ss_pred eEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH--------HHHHHHhc------chHHHHHHHHHHhhccCCe
Confidence 347899999999999999973 22 345566443 22222111 1233344444444457899
Q ss_pred EEEEECCCC
Q 042296 268 LLVLDDVWN 276 (1446)
Q Consensus 268 LlVlDdv~~ 276 (1446)
.|.||.+++
T Consensus 767 VIFFDELDS 775 (953)
T KOG0736|consen 767 VIFFDELDS 775 (953)
T ss_pred EEEeccccc
Confidence 999999865
No 437
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=86.44 E-value=1.3 Score=51.74 Aligned_cols=84 Identities=15% Similarity=0.298 Sum_probs=47.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCC------CCCCCCHH-----HH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-FDITRITKSILNSIGTDQ------NVDSLDFD-----KL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~-----~~ 254 (1446)
.++|+|..|+|||||++.+.+.. +.+..+++.+++. ..+.++..+....=.... ..+..... ..
T Consensus 157 rigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~ 232 (433)
T PRK07594 157 RVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV 232 (433)
T ss_pred EEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 45789999999999999998732 2444556555543 344455555432110000 00000111 11
Q ss_pred HHHHHHHc--CCceEEEEEECC
Q 042296 255 QVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l--~~~~~LlVlDdv 274 (1446)
...+.+++ +++++|+++||+
T Consensus 233 a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 233 ATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHCCCcEEEEEeCH
Confidence 22233444 589999999999
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=86.42 E-value=2.4 Score=45.79 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=29.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSI 236 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 236 (1446)
.+.|.|..|+||||+|.+++... .++. ..+++++... +..++.+.+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 45789999999999986665431 1222 3456666433 445555555
No 439
>PRK00131 aroK shikimate kinase; Reviewed
Probab=86.37 E-value=0.42 Score=49.33 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.++|++|+||||+|+.++.
T Consensus 6 ~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 457889999999999999987
No 440
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.36 E-value=0.44 Score=60.83 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=51.3
Q ss_pred CceEEEEEECCCCC-ChhhHHHh----cccccCCCCCcEEEEEccChHHHHhhCCCCceecCCCChH-hHHHHHHhhccC
Q 042296 264 QKKFLLVLDDVWNE-NYNDWIDL----SRPFEAGAPGSKIVVTTRNQAVVAIMGTVPAYPLKELSDE-DCLNVFTQHSLG 337 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~-~~~~~~~~----~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~ 337 (1446)
..+-|+++|..-.. +..+...+ ...+. ..|+.+|+||-...+.........+....+..+ +... |..+. .
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl-~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKL-L 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEE-C
Confidence 57899999998543 22222223 22332 258899999999877554322211111111111 1111 11111 1
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCC
Q 042296 338 TRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK 375 (1446)
Q Consensus 338 ~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~ 375 (1446)
.+. +. ...|-.|++++ |+|-.+.--|..+...
T Consensus 477 ~G~--~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 508 (771)
T TIGR01069 477 KGI--PG---ESYAFEIAQRY-GIPHFIIEQAKTFYGE 508 (771)
T ss_pred CCC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHHh
Confidence 111 11 23466677776 7887777777666543
No 441
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=86.33 E-value=1.2 Score=52.68 Aligned_cols=87 Identities=13% Similarity=0.214 Sum_probs=50.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCC--ceEEEEeCCCC-CHHHHHHHHHHHhcCCCC-------CCCCC----HHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFD--LKAWTCVSEDF-DITRITKSILNSIGTDQN-------VDSLD----FDK 253 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-------~~~~~----~~~ 253 (1446)
++|.|..|+|||||+..+.+.....+.+. .++++-+++.. .+.++.+++...=..... .++.- ...
T Consensus 144 ~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~ 223 (458)
T TIGR01041 144 LPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPR 223 (458)
T ss_pred EEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 47899999999999999987543321221 45666666554 456666666543211110 01100 111
Q ss_pred HHHHHHHHc---CCceEEEEEECC
Q 042296 254 LQVELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 254 ~~~~l~~~l---~~~~~LlVlDdv 274 (1446)
....+.+++ +++++|+++||+
T Consensus 224 ~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 224 MALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCh
Confidence 223344554 478999999998
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=86.29 E-value=0.43 Score=49.44 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|+.|+||||+|+.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999998763
No 443
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=86.27 E-value=3.5 Score=50.74 Aligned_cols=129 Identities=17% Similarity=0.134 Sum_probs=70.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|++|.|||.||+++++ ..+..|- .+... +++.... ......+........+..+
T Consensus 278 giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~--------~l~sk~v------Gesek~ir~~F~~A~~~~p 336 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS--------ELLSKWV------GESEKNIRELFEKARKLAP 336 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH--------HHhcccc------chHHHHHHHHHHHHHcCCC
Confidence 345889999999999999998 3333442 22211 1111111 1122333334444446788
Q ss_pred EEEEEECCCCC------C-h----hhHHHhcccccC--CCCCcEEEEEccChHHHHhh-----CCCCceecCCCChHhHH
Q 042296 267 FLLVLDDVWNE------N-Y----NDWIDLSRPFEA--GAPGSKIVVTTRNQAVVAIM-----GTVPAYPLKELSDEDCL 328 (1446)
Q Consensus 267 ~LlVlDdv~~~------~-~----~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~ 328 (1446)
..|.+|.++.- + . ....++...+.. ...+..||-||-.++..... .-...+.+..-+.++..
T Consensus 337 ~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~ 416 (494)
T COG0464 337 SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERL 416 (494)
T ss_pred cEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHH
Confidence 99999998431 0 0 111222222221 12344455566544433221 11346888888999999
Q ss_pred HHHHhhcc
Q 042296 329 NVFTQHSL 336 (1446)
Q Consensus 329 ~lf~~~a~ 336 (1446)
+.|..+.-
T Consensus 417 ~i~~~~~~ 424 (494)
T COG0464 417 EIFKIHLR 424 (494)
T ss_pred HHHHHHhc
Confidence 99998873
No 444
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=86.26 E-value=0.45 Score=49.83 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|.+|+||||+|+.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999985
No 445
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=86.10 E-value=1.8 Score=47.70 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=27.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED 226 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 226 (1446)
.+-|.|.+|+||||+|.+++... . ..=..+++++...+
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~-a-~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQ-A-SRGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-H-hCCCcEEEEEecCC
Confidence 44689999999999999976531 1 22346788887643
No 446
>PRK15453 phosphoribulokinase; Provisional
Probab=86.09 E-value=2.4 Score=46.24 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=40.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCC-ceEEEEeCCC--CCHHHHHHHHH--HHhcCCCC---CCCCCHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFD-LKAWTCVSED--FDITRITKSIL--NSIGTDQN---VDSLDFDKLQVEL 258 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~--~~~~~~~~~i~--~~l~~~~~---~~~~~~~~~~~~l 258 (1446)
.++|.|.+|+||||+|+.+.+ ..+ +.. ..+.++...- ++-...-..+. +.-+.... .+..+.+.+.+.+
T Consensus 7 iI~ItG~SGsGKTTva~~l~~--if~-~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 7 IIAVTGSSGAGTTTVKRAFEK--IFR-RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHh-hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 578999999999999998875 222 111 2333333221 23222222221 22222111 2556777777777
Q ss_pred HHHcC
Q 042296 259 KKQLS 263 (1446)
Q Consensus 259 ~~~l~ 263 (1446)
+...+
T Consensus 84 ~~l~~ 88 (290)
T PRK15453 84 REYGE 88 (290)
T ss_pred HHHhc
Confidence 77654
No 447
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=85.97 E-value=0.47 Score=47.74 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.1
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999986
No 448
>PRK06936 type III secretion system ATPase; Provisional
Probab=85.94 E-value=1.6 Score=51.04 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=49.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----CCCCHH------HH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQNV-----DSLDFD------KL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~------~~ 254 (1446)
.++|.|..|+|||||.+.+++... -+.++++-+++.. .+.++.+..+..-+..... ...... ..
T Consensus 164 ~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~ 239 (439)
T PRK06936 164 RMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFV 239 (439)
T ss_pred EEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHH
Confidence 357889999999999999997432 2566777776654 3455554444322111100 001111 11
Q ss_pred HHHHHHHc--CCceEEEEEECC
Q 042296 255 QVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l--~~~~~LlVlDdv 274 (1446)
...+.+++ +++++|+++||+
T Consensus 240 a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 240 ATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12233333 589999999998
No 449
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=85.93 E-value=1.9 Score=53.36 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=56.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC---CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF---DLKAWTCVSEDFDITRITKSILNSIGTDQNVD--SLDFDKLQVELKKQ 261 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~l~~~ 261 (1446)
...|.|.+|.||||++..+... ..... ..++.+.....--..++.+.+-..+..-...+ ......-...+.+.
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 4578899999999999888762 22211 13455554444334444444433221110000 00000011222222
Q ss_pred cC----C--------ce---EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEcc
Q 042296 262 LS----Q--------KK---FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTR 303 (1446)
Q Consensus 262 l~----~--------~~---~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR 303 (1446)
|. + .+ -+||+|.+.--+......+..+++ +++|+|+.--
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD 300 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGD 300 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecc
Confidence 21 1 11 289999986555555566666665 5778887653
No 450
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=85.92 E-value=0.41 Score=51.72 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=17.0
Q ss_pred eEccCCchHHHHHHHHHccc
Q 042296 190 VYGMGGLGKTTLAQLVYNDA 209 (1446)
Q Consensus 190 i~G~gG~GKTtLa~~v~~~~ 209 (1446)
|+|++|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998753
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=85.87 E-value=0.74 Score=48.75 Aligned_cols=22 Identities=18% Similarity=0.005 Sum_probs=19.4
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.+.|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4578999999999999999984
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=85.83 E-value=0.53 Score=46.00 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.3
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|+|+.|+|||||++.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999987
No 453
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=85.81 E-value=1.8 Score=50.85 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=50.8
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCC-----CCCCC-HH-----HHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQN-----VDSLD-FD-----KLQ 255 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-----~~~~~-~~-----~~~ 255 (1446)
.+|.|..|+|||||+.++..... .++=+.++++-+++.. .+.++.+++...=..... ..... .. ...
T Consensus 146 ~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a 224 (461)
T TIGR01039 146 IGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTG 224 (461)
T ss_pred EEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 47899999999999999876321 1122366777776553 456676666543111110 01111 11 122
Q ss_pred HHHHHHc---CCceEEEEEECC
Q 042296 256 VELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 256 ~~l~~~l---~~~~~LlVlDdv 274 (1446)
..+.+++ +++.+|+++||+
T Consensus 225 ~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 225 LTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHhcCCeeEEEecch
Confidence 3345555 578999999999
No 454
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=85.78 E-value=0.75 Score=51.01 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=32.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED 226 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 226 (1446)
.+.|+|.+|+|||++|.++.. +...+...++||+..+.
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 457999999999999999987 45556888999998765
No 455
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=85.71 E-value=1.9 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.3
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++.++|..|+||||+|..++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999988876
No 456
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=85.70 E-value=0.53 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.2
Q ss_pred ceeEccCCchHHHHHHHHHccc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDA 209 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~ 209 (1446)
+.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4689999999999999998754
No 457
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.68 E-value=8.9 Score=37.79 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHHHHHHcCCceEEEEEECC----CCCChhhHHHhcccccCCCCCcE
Q 042296 227 FDITRITKSILNSIGTDQNV-----DSLDFDKLQVELKKQLSQKKFLLVLDDV----WNENYNDWIDLSRPFEAGAPGSK 297 (1446)
Q Consensus 227 ~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~~~LlVlDdv----~~~~~~~~~~~~~~l~~~~~gs~ 297 (1446)
.+..+..++.+.+++..... .-..-++-.-.+.+.+..++-+++-|.- +........++.-.+ ....|+.
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~T 199 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTT 199 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCce
Confidence 45677788888888765431 1122344455677778888888887763 222222333333232 2457999
Q ss_pred EEEEccChHHHHhhCC
Q 042296 298 IVVTTRNQAVVAIMGT 313 (1446)
Q Consensus 298 iivTtR~~~v~~~~~~ 313 (1446)
.+..|-++.+|..|..
T Consensus 200 lVlVTHD~~LA~Rc~R 215 (228)
T COG4181 200 LVLVTHDPQLAARCDR 215 (228)
T ss_pred EEEEeCCHHHHHhhhh
Confidence 9999999999988753
No 458
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=85.58 E-value=2.4 Score=50.27 Aligned_cols=83 Identities=14% Similarity=0.283 Sum_probs=48.7
Q ss_pred ceeEccCCchHHHHH-HHHHcccchhccCCc-eEEEEeCCCC-CHHHHHHHHHHHhcCCCC-------CCCCCHH----H
Q 042296 188 AKVYGMGGLGKTTLA-QLVYNDARLQDHFDL-KAWTCVSEDF-DITRITKSILNSIGTDQN-------VDSLDFD----K 253 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~~----~ 253 (1446)
.+|.|..|+|||||| ..+.+. ..-+. ++++-+++.. .+.++.+.+...=..... .++.-.. .
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~q----~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~ 240 (497)
T TIGR03324 165 ELILGDRQTGKTAIAIDTILNQ----KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPY 240 (497)
T ss_pred EEeecCCCCCHHHHHHHHHHHh----cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHH
Confidence 468899999999997 567763 23354 6778887764 455666665543211110 0111011 1
Q ss_pred HHHHHHHHc--CCceEEEEEECC
Q 042296 254 LQVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 254 ~~~~l~~~l--~~~~~LlVlDdv 274 (1446)
....+.+++ +++.+|||+||+
T Consensus 241 ~a~aiAEyfrd~G~~VLlv~Ddl 263 (497)
T TIGR03324 241 AATSIGEHFMEQGRDVLIVYDDL 263 (497)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCh
Confidence 122233444 689999999998
No 459
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=85.46 E-value=2.6 Score=50.52 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=26.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED 226 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 226 (1446)
.+.|.|.+|+|||||+.+++... ...=..++|++..+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEES 133 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCC
Confidence 34578999999999999987632 222235778876543
No 460
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=85.46 E-value=0.53 Score=46.89 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=18.4
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|..|+||||+|+.+..
T Consensus 2 I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999986
No 461
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.33 E-value=1.8 Score=53.28 Aligned_cols=20 Identities=45% Similarity=0.730 Sum_probs=18.1
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+-|+|..|+|||++|+.+++
T Consensus 89 vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 89 VIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999975
No 462
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.32 E-value=0.53 Score=48.87 Aligned_cols=26 Identities=42% Similarity=0.544 Sum_probs=21.5
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF 215 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F 215 (1446)
+-+||++|.|||-.|++|+| +....|
T Consensus 214 vllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 214 VLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred eEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 45789999999999999999 555444
No 463
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=85.29 E-value=1.8 Score=53.52 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=22.7
Q ss_pred EEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT 302 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt 302 (1446)
+||+|.+.--+...+..+...++ +++|+|+.-
T Consensus 262 vlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvG 293 (586)
T TIGR01447 262 VLVVDEASMVDLPLMAKLLKALP---PNTKLILLG 293 (586)
T ss_pred EEEEcccccCCHHHHHHHHHhcC---CCCEEEEEC
Confidence 89999987665556666666665 477887765
No 464
>PRK13948 shikimate kinase; Provisional
Probab=85.28 E-value=0.51 Score=48.47 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.++|+.|+||||+++.+.+
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987
No 465
>PRK05636 replicative DNA helicase; Provisional
Probab=85.23 E-value=19 Score=43.86 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=33.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSI 240 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 240 (1446)
.+.|.|.+|+||||+|..++...-.+... .++++ |-+-+..++...++...
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~-~v~~f--SlEMs~~ql~~R~ls~~ 317 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNK-ASVIF--SLEMSKSEIVMRLLSAE 317 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCC-eEEEE--EeeCCHHHHHHHHHHHh
Confidence 45678999999999999887643233332 23333 44556677777776654
No 466
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=85.18 E-value=0.78 Score=47.99 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+|+|..|+||||||+.+.-
T Consensus 35 ~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhc
Confidence 458999999999999999975
No 467
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=85.16 E-value=0.53 Score=48.47 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.+.|++|+||||+|+.+..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999986
No 468
>PRK13946 shikimate kinase; Provisional
Probab=85.13 E-value=0.53 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.++|+.|+||||+|+.+.+
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987
No 469
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=85.09 E-value=3.6 Score=45.03 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=33.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNS 239 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 239 (1446)
.+.|.|.+|+|||++|.+++.+.- ..+=..++|++... +..++...++..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 456889999999999998876422 22123567777654 455666666543
No 470
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=85.06 E-value=1 Score=50.58 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=30.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKS 235 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 235 (1446)
.+-+.|.||+||||+|.+.+- ........+.-|+.....+..+++..
T Consensus 4 iv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 4 IVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred EEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 345779999999999988654 23333355677776665555554443
No 471
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=1.9 Score=54.58 Aligned_cols=89 Identities=13% Similarity=0.245 Sum_probs=50.8
Q ss_pred eEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE-E
Q 042296 190 VYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF-L 268 (1446)
Q Consensus 190 i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~-L 268 (1446)
+.|+.|+|||-||++++. -+-+. .-.+|.+ |+.+.+. +.+-++.+.. .--.+....+.+.++.++| +
T Consensus 596 flGpdgvGKt~lAkaLA~--~~Fgs--e~~~Iri----Dmse~~e-vskligsp~g---yvG~e~gg~LteavrrrP~sV 663 (898)
T KOG1051|consen 596 FLGPDGVGKTELAKALAE--YVFGS--EENFIRL----DMSEFQE-VSKLIGSPPG---YVGKEEGGQLTEAVKRRPYSV 663 (898)
T ss_pred EECCCchhHHHHHHHHHH--HHcCC--ccceEEe----chhhhhh-hhhccCCCcc---cccchhHHHHHHHHhcCCceE
Confidence 569999999999999886 22222 2334443 3333333 3333333321 1112223466677777776 5
Q ss_pred EEEECCCCCChhhHHHhccccc
Q 042296 269 LVLDDVWNENYNDWIDLSRPFE 290 (1446)
Q Consensus 269 lVlDdv~~~~~~~~~~~~~~l~ 290 (1446)
|.||||+..+......+...+.
T Consensus 664 VLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 664 VLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred EEEechhhcCHHHHHHHHHHHh
Confidence 6689998887666554444443
No 472
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.99 E-value=3.9 Score=49.95 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=37.9
Q ss_pred CCcEEEEEcc-ChHHHHhhCC--CCceecCCCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchh
Q 042296 294 PGSKIVVTTR-NQAVVAIMGT--VPAYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPL 363 (1446)
Q Consensus 294 ~gs~iivTtR-~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPl 363 (1446)
++.-++.||- .+++...+.. .+.+++..+++++-.++|+.++-... .+ -..--++.+++|.|.-+
T Consensus 532 ~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~-~n----~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 532 PPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP-LN----QDVNLKQLARKTSGFSF 599 (953)
T ss_pred CceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc-cc----hHHHHHHHHHhcCCCCH
Confidence 3444444443 3444433322 25688999999999999998762211 11 12334567777777654
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=84.79 E-value=0.59 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|+.|+|||||++.++..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999763
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=84.73 E-value=0.57 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|+.|+||||+|+.+...
T Consensus 6 ~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 3678999999999999999873
No 475
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=84.66 E-value=1.7 Score=42.29 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=27.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEe
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCV 223 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 223 (1446)
...|+|-||+||+++.+.+|... ..+.+...+||+.
T Consensus 22 K~vivGng~VGKssmiqryCkgi-fTkdykktIgvdf 57 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDF 57 (246)
T ss_pred EEEEECCCccchHHHHHHHhccc-cccccccccchhh
Confidence 34699999999999999999742 3445566777764
No 476
>PRK14530 adenylate kinase; Provisional
Probab=84.62 E-value=0.57 Score=50.19 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=18.3
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|+|++|+||||+|+.++.
T Consensus 6 I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999976
No 477
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=84.51 E-value=1.9 Score=43.78 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=41.8
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHcCCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN--VDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~ 265 (1446)
+-|.|.+|+||||+|..+... .. ..++++.-...++. +..+.|......... .-......+...+.....+.
T Consensus 4 ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~ 77 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPG 77 (170)
T ss_pred EEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCC
Confidence 468899999999999998763 11 12344444443333 444555443322211 01111223444444433333
Q ss_pred eEEEEEECC
Q 042296 266 KFLLVLDDV 274 (1446)
Q Consensus 266 ~~LlVlDdv 274 (1446)
. ++++|.+
T Consensus 78 ~-~VlID~L 85 (170)
T PRK05800 78 R-CVLVDCL 85 (170)
T ss_pred C-EEEehhH
Confidence 3 6888886
No 478
>PLN02796 D-glycerate 3-kinase
Probab=84.51 E-value=3.1 Score=46.91 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|..|+||||||+.+..
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999986
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=84.42 E-value=0.63 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+|+.++.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999987
No 480
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=84.39 E-value=2.6 Score=49.39 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
..+|+|..|+|||||++.+...
T Consensus 159 ~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 159 KLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 3578999999999999999863
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=84.34 E-value=0.64 Score=42.45 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=17.8
Q ss_pred cceeEccCCchHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVY 206 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~ 206 (1446)
.+.|+|..|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 45899999999999999876
No 482
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.34 E-value=1 Score=48.71 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=45.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC--------------CCC-----
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQ--------------NVD----- 247 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~--------------~~~----- 247 (1446)
.+-|.|.+|+|||++|.++.... .++.=..++||+..++. .++.+.+ ++++.+. ...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~~--~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEPP--EELIENM-KSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-H--HHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred EEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCCH--HHHHHHH-HHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 34688999999999999876521 12213467888876553 3333332 2332110 000
Q ss_pred CCCHHHHHHHHHHHcCC-ceEEEEEECC
Q 042296 248 SLDFDKLQVELKKQLSQ-KKFLLVLDDV 274 (1446)
Q Consensus 248 ~~~~~~~~~~l~~~l~~-~~~LlVlDdv 274 (1446)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34556666666665543 3367777775
No 483
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=84.30 E-value=1.2 Score=46.37 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=55.8
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--CCCCHHHHHHHHHHHcC--
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV--DSLDFDKLQVELKKQLS-- 263 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~-- 263 (1446)
+.|.|..|.||||+.+.+.-.. +-.+-.+.+|..... -....+++..++..... .......-..++...+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~ 76 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNA 76 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehheE----ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhC
Confidence 4689999999999999998421 111111111111000 00011111111111110 11122222233444443
Q ss_pred CceEEEEEECCCCC-ChhhH----HHhcccccCCCCCcEEEEEccChHHHHhh
Q 042296 264 QKKFLLVLDDVWNE-NYNDW----IDLSRPFEAGAPGSKIVVTTRNQAVVAIM 311 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~-~~~~~----~~~~~~l~~~~~gs~iivTtR~~~v~~~~ 311 (1446)
.++-++++|..-.. +..+- ..+...+.. ..|+.+|++|...++...+
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 37899999997432 11111 122222222 1377899999988876654
No 484
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.24 E-value=0.95 Score=52.28 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=56.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+.|.|..|+||||+.+.+.. .+......+++. +.++.... ... ...+..... ...+.......++..++..+
T Consensus 124 ~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~~--~~~-~~~~i~q~e-vg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEYV--HRN-KRSLINQRE-VGLDTLSFANALRAALREDP 196 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhhh--ccC-ccceEEccc-cCCCCcCHHHHHHHhhccCC
Confidence 457889999999999998876 233344445543 32221110 000 000000000 11112234566778888899
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ 305 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~ 305 (1446)
=.|++|.+.+. ..+...... ...|-.|+.|.-..
T Consensus 197 d~i~vgEird~--~~~~~~l~a---a~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 197 DVILIGEMRDL--ETVELALTA---AETGHLVFGTLHTN 230 (343)
T ss_pred CEEEEeCCCCH--HHHHHHHHH---HHcCCcEEEEEcCC
Confidence 99999999755 444332222 22455555555443
No 485
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=84.15 E-value=2.1 Score=50.58 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=44.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCCCCC----HHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTD-------QNVDSLD----FDKLQ 255 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------~~~~~~~----~~~~~ 255 (1446)
.++|+|..|+|||||++.+...... -..++++.--+.-++.++..+.+..-+.. ...++.- .....
T Consensus 160 ~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a 236 (438)
T PRK07721 160 RVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTA 236 (438)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHH
Confidence 4578999999999999988863211 12334433223334555444322211100 0001110 11122
Q ss_pred HHHHHHc--CCceEEEEEECC
Q 042296 256 VELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 256 ~~l~~~l--~~~~~LlVlDdv 274 (1446)
..+.+++ +++++|+++||+
T Consensus 237 ~~iAEyfr~~g~~Vll~~Dsl 257 (438)
T PRK07721 237 TAIAEYFRDQGLNVMLMMDSV 257 (438)
T ss_pred HHHHHHHHHCCCcEEEEEeCh
Confidence 2233444 589999999998
No 486
>COG4639 Predicted kinase [General function prediction only]
Probab=84.08 E-value=0.5 Score=45.47 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.+.|..|+||+|.|+.-+.
T Consensus 4 LvvL~G~~~sGKsT~ak~n~~ 24 (168)
T COG4639 4 LVVLRGASGSGKSTFAKENFL 24 (168)
T ss_pred EEEEecCCCCchhHHHHHhCC
Confidence 357889999999999988543
No 487
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.07 E-value=2.7 Score=49.21 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=46.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCCCCH----HHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQ-------NVDSLDF----DKL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~----~~~ 254 (1446)
..+|+|..|+|||||++.+..... -+..+.+.+.+.. .+.++..+....-.... ..++.-. ...
T Consensus 139 ~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~ 214 (411)
T TIGR03496 139 RMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFY 214 (411)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 357899999999999998886321 2334445555443 34445444443311110 0011101 111
Q ss_pred HHHHHHHc--CCceEEEEEECC
Q 042296 255 QVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l--~~~~~LlVlDdv 274 (1446)
...+.+++ +++++|+++||+
T Consensus 215 a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 215 ATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHCCCCEEEEEeCh
Confidence 22233333 589999999998
No 488
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=84.04 E-value=2.3 Score=47.20 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=24.2
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEcc
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTR 303 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR 303 (1446)
+-+||+|.+.+-...+...+ +.-.+.||||+.|--
T Consensus 352 ~~FiIIDEaQNLTpheikTi---ltR~G~GsKIVl~gd 386 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTI---LTRAGEGSKIVLTGD 386 (436)
T ss_pred cceEEEehhhccCHHHHHHH---HHhccCCCEEEEcCC
Confidence 56899999976544444443 444568999999874
No 489
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=84.00 E-value=0.65 Score=45.18 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=30.4
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQ 244 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 244 (1446)
.++.|+|.+|+||||+.+.+-... +..+ -.+.-.+.-+++.+.+...
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l-~~~~-----------ivNyG~~Mle~A~k~glve 51 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKEL-VKHK-----------IVNYGDLMLEIAKKKGLVE 51 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHH-hhce-----------eeeHhHHHHHHHHHhCCcc
Confidence 467899999999999988776521 1111 1134556667777666543
No 490
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=83.98 E-value=0.76 Score=47.76 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=26.4
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEe
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCV 223 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 223 (1446)
+.+.|+|+.|+|||||++.+.. .....|...++.+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 3567999999999999999987 44556654444443
No 491
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.94 E-value=0.25 Score=49.72 Aligned_cols=67 Identities=21% Similarity=0.395 Sum_probs=44.1
Q ss_pred cccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccccCCcccEEEeccC
Q 042296 974 LLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNC 1043 (1446)
Q Consensus 974 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c 1043 (1446)
.+..++.++.+.+.+|..+.++....... ..++|+.|+|++|..+++-....+..+++|+.|.+.+-
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 44556666777777777776665543332 45777888888877777655545666777777777663
No 492
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=83.94 E-value=0.72 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.7
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|+|..|+|||||++.+...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHH
Confidence 5689999999999999999863
No 493
>PF13479 AAA_24: AAA domain
Probab=83.93 E-value=2.7 Score=44.85 Aligned_cols=18 Identities=50% Similarity=0.663 Sum_probs=16.0
Q ss_pred ceeEccCCchHHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLV 205 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v 205 (1446)
+.|||.+|+||||+|..+
T Consensus 6 ~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEECCCCCCHHHHHHhC
Confidence 469999999999999765
No 494
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=83.75 E-value=1.8 Score=50.78 Aligned_cols=84 Identities=15% Similarity=0.264 Sum_probs=44.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCC-------CCCC----CCHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQ-------NVDS----LDFDKL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~-------~~~~----~~~~~~ 254 (1446)
.++|+|..|+|||||++.+..... .+..+...+.. ..++.++..+.+.+-+... .... ....+.
T Consensus 157 ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~ 232 (434)
T PRK07196 157 RVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATEL 232 (434)
T ss_pred EEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHH
Confidence 457899999999999998886321 22222233332 2234444444443332111 0000 111222
Q ss_pred HHHHHHHc--CCceEEEEEECC
Q 042296 255 QVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l--~~~~~LlVlDdv 274 (1446)
...+.+++ +++.+|+++||+
T Consensus 233 a~~iAEyfr~~g~~Vll~~Dsl 254 (434)
T PRK07196 233 CHAIATYYRDKGHDVLLLVDSL 254 (434)
T ss_pred HHHHHHHhhhccCCEEEeecch
Confidence 33334433 589999999998
No 495
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=83.59 E-value=2.6 Score=46.64 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=36.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGT 242 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 242 (1446)
...|-|.+|+|||++|..++.+.-... -..++|++.. .+..++...++.....
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlE--m~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLE--MSEEELAARLLARLSG 73 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESS--S-HHHHHHHHHHHHHT
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCC--CCHHHHHHHHHHHhhc
Confidence 346889999999999999988543322 2556666653 4566777777766543
No 496
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=83.52 E-value=1.7 Score=45.95 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.8
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|.|+.|+||||+|+.+++.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999999873
No 497
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=83.52 E-value=1.4 Score=50.66 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=32.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC---CceEEEEeCC-CCCHHHHHHHHHHHh
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF---DLKAWTCVSE-DFDITRITKSILNSI 240 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs~-~~~~~~~~~~i~~~l 240 (1446)
.+-++|++|+|||++|+.++.. ....| +..-++..+. ..+...+.+.+....
T Consensus 49 ~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 49 NILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 4568999999999999999873 33333 3332332222 235666666665543
No 498
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=83.50 E-value=2.1 Score=50.34 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=46.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC------CCCCHH-----HH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTDQNV------DSLDFD-----KL 254 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~------~~~~~~-----~~ 254 (1446)
.++|+|..|+|||||++.+.... ..+.++...+.... ++.++...+...-+..... +..... ..
T Consensus 170 rigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~ 245 (451)
T PRK05688 170 RLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMY 245 (451)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHH
Confidence 35789999999999999988632 12333344444333 4555555554432211100 111111 11
Q ss_pred HHHHHHHc--CCceEEEEEECC
Q 042296 255 QVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 255 ~~~l~~~l--~~~~~LlVlDdv 274 (1446)
...+.+++ +++++|+++||+
T Consensus 246 a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 246 CTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHCCCCEEEEecch
Confidence 22233443 589999999998
No 499
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=83.47 E-value=3.4 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+-|+|..|+|||++|+.+++.
T Consensus 212 pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 212 NVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3468999999999999999873
No 500
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.44 E-value=1 Score=46.10 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=24.9
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEE
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTC 222 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 222 (1446)
.++.|+|++|+|||||.+.+..= ...=++.+||.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~ 62 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVD 62 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEEC
Confidence 36789999999999999988752 22224566664
Done!