Query 042296
Match_columns 1446
No_of_seqs 759 out of 5808
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 07:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.8E-47 3E-51 489.1 28.7 271 1161-1441 467-766 (768)
2 2a5y_B CED-4; apoptosis; HET: 100.0 4.5E-43 1.5E-47 432.4 21.7 296 185-500 152-473 (549)
3 3rgz_A Protein brassinosteroid 100.0 2.2E-41 7.5E-46 438.5 29.5 621 563-1274 69-722 (768)
4 1vt4_I APAF-1 related killer D 100.0 2E-35 6.8E-40 361.0 19.2 265 185-491 150-436 (1221)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-33 6.1E-38 362.4 37.6 581 575-1316 8-621 (680)
6 3t6q_A CD180 antigen; protein- 100.0 7.4E-32 2.5E-36 342.5 37.5 94 575-670 16-110 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-32 2.3E-36 347.8 37.4 147 596-813 6-156 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-32 1.9E-36 343.5 34.5 270 1004-1317 281-558 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.5E-32 2.2E-36 343.0 26.4 196 571-810 32-237 (606)
10 3t6q_A CD180 antigen; protein- 100.0 1.5E-31 5.2E-36 339.6 28.8 98 572-670 34-134 (606)
11 3sfz_A APAF-1, apoptotic pepti 100.0 3.4E-32 1.2E-36 377.8 23.5 287 184-498 146-452 (1249)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-30 1.4E-34 336.6 39.6 79 1005-1094 335-413 (844)
13 1z6t_A APAF-1, apoptotic prote 100.0 3.7E-30 1.3E-34 324.1 25.0 282 185-496 147-450 (591)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1E-28 3.4E-33 309.7 26.4 366 575-1094 9-399 (549)
15 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-28 2.9E-32 314.7 36.0 507 540-1096 23-561 (844)
16 2z63_A TOLL-like receptor 4, v 100.0 7E-28 2.4E-32 304.0 31.7 247 1003-1291 277-532 (570)
17 4eco_A Uncharacterized protein 100.0 1.5E-28 5.2E-33 310.2 21.1 375 603-1243 192-598 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 6.9E-28 2.4E-32 307.1 22.8 150 604-813 435-606 (876)
19 2z63_A TOLL-like receptor 4, v 100.0 1.3E-27 4.6E-32 301.4 24.5 91 1181-1272 442-534 (570)
20 2z81_A CD282 antigen, TOLL-lik 99.9 4.1E-27 1.4E-31 295.1 25.2 99 571-671 26-129 (549)
21 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-26 4.7E-31 287.8 27.0 189 574-813 3-201 (520)
22 4eco_A Uncharacterized protein 99.9 3.4E-27 1.2E-31 297.9 19.8 467 571-1274 81-583 (636)
23 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-25 4.4E-30 288.0 27.2 98 571-670 52-153 (635)
24 4ecn_A Leucine-rich repeat pro 99.9 3.5E-26 1.2E-30 291.5 19.3 205 563-812 440-683 (876)
25 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-25 4.7E-30 278.8 23.8 274 1006-1343 188-479 (520)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.7E-24 9.4E-29 269.0 26.4 428 574-1095 34-486 (562)
27 1jl5_A Outer protein YOPM; leu 99.9 4.6E-24 1.6E-28 256.4 24.9 79 569-659 9-88 (454)
28 4g8a_A TOLL-like receptor 4; l 99.9 5E-23 1.7E-27 263.9 36.0 523 575-1316 35-579 (635)
29 1jl5_A Outer protein YOPM; leu 99.9 4.2E-24 1.4E-28 256.8 21.4 266 539-915 9-288 (454)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-23 3.7E-28 263.6 25.2 73 594-670 31-105 (562)
31 1o6v_A Internalin A; bacterial 99.9 6.3E-22 2.2E-26 241.0 26.5 188 569-812 44-231 (466)
32 3bz5_A Internalin-J, INLJ; leu 99.9 9.7E-22 3.3E-26 236.4 24.2 354 566-1099 37-391 (457)
33 1o6v_A Internalin A; bacterial 99.9 9.9E-22 3.4E-26 239.3 20.5 191 567-813 64-254 (466)
34 3v47_A TOLL-like receptor 5B a 99.9 4.9E-21 1.7E-25 233.5 24.0 100 571-670 30-134 (455)
35 3bz5_A Internalin-J, INLJ; leu 99.9 2.7E-21 9.3E-26 232.5 18.1 282 537-915 38-329 (457)
36 4fmz_A Internalin; leucine ric 99.8 1.1E-20 3.8E-25 221.0 18.7 96 569-670 42-137 (347)
37 3v47_A TOLL-like receptor 5B a 99.8 5E-20 1.7E-24 224.6 22.1 108 1181-1289 296-407 (455)
38 3o6n_A APL1; leucine-rich repe 99.8 1.9E-20 6.6E-25 222.5 16.6 300 539-915 43-350 (390)
39 2id5_A Lingo-1, leucine rich r 99.8 1.2E-19 4.1E-24 222.4 23.8 80 572-652 33-115 (477)
40 4fcg_A Uncharacterized protein 99.8 6.6E-20 2.3E-24 210.7 18.2 189 569-817 79-268 (328)
41 3oja_B Anopheles plasmodium-re 99.8 2.9E-20 9.9E-25 233.5 16.0 299 540-915 50-356 (597)
42 2id5_A Lingo-1, leucine rich r 99.8 3.3E-19 1.1E-23 218.4 20.6 294 541-915 32-331 (477)
43 4fmz_A Internalin; leucine ric 99.8 1.2E-19 4.2E-24 212.1 15.1 279 567-915 62-344 (347)
44 3oja_B Anopheles plasmodium-re 99.8 5.5E-19 1.9E-23 221.8 21.2 100 569-670 49-152 (597)
45 3o6n_A APL1; leucine-rich repe 99.8 3.9E-19 1.3E-23 211.2 17.1 302 516-895 45-351 (390)
46 1xku_A Decorin; proteoglycan, 99.8 1.5E-18 5.2E-23 200.8 20.5 280 572-914 32-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-18 7.9E-23 199.4 17.8 280 572-915 34-331 (332)
48 4fcg_A Uncharacterized protein 99.8 7.1E-19 2.4E-23 202.1 11.5 191 562-821 95-296 (328)
49 1ogq_A PGIP-2, polygalacturona 99.8 4.5E-19 1.5E-23 202.6 8.6 109 562-670 67-179 (313)
50 1ogq_A PGIP-2, polygalacturona 99.7 7.9E-19 2.7E-23 200.6 8.4 250 516-815 50-304 (313)
51 2ft3_A Biglycan; proteoglycan, 99.7 5.3E-17 1.8E-21 187.9 13.6 96 571-670 54-152 (332)
52 3ogk_B Coronatine-insensitive 99.7 1.8E-18 6.2E-23 218.8 1.3 84 569-652 110-203 (592)
53 2z80_A TOLL-like receptor 2, v 99.7 1.7E-16 5.8E-21 185.5 17.2 96 571-670 31-129 (353)
54 3g06_A SSPH2 (leucine-rich rep 99.7 4.3E-16 1.5E-20 192.3 21.1 257 569-916 38-296 (622)
55 3ogk_B Coronatine-insensitive 99.7 6.4E-18 2.2E-22 213.7 2.4 59 1007-1067 462-524 (592)
56 1xku_A Decorin; proteoglycan, 99.7 1.6E-15 5.4E-20 175.4 22.3 158 1160-1342 171-329 (330)
57 3g06_A SSPH2 (leucine-rich rep 99.7 4.3E-15 1.5E-19 183.4 25.5 256 1008-1343 40-295 (622)
58 2z66_A Variable lymphocyte rec 99.7 1.7E-16 6E-21 181.4 11.5 80 572-652 29-112 (306)
59 2z80_A TOLL-like receptor 2, v 99.6 2.4E-16 8.2E-21 184.2 11.2 248 571-894 52-312 (353)
60 3zyi_A Leucine-rich repeat-con 99.6 1.3E-15 4.4E-20 184.4 17.5 98 571-670 75-176 (452)
61 3zyj_A Leucine-rich repeat-con 99.6 2.5E-15 8.7E-20 181.1 18.6 98 571-670 64-165 (440)
62 2z66_A Variable lymphocyte rec 99.6 4.9E-16 1.7E-20 177.6 11.5 91 576-670 12-106 (306)
63 3zyi_A Leucine-rich repeat-con 99.6 3.2E-15 1.1E-19 181.0 19.2 94 573-670 56-152 (452)
64 3zyj_A Leucine-rich repeat-con 99.6 9.8E-16 3.4E-20 184.8 14.6 241 574-872 46-290 (440)
65 1z7x_W Ribonuclease inhibitor; 99.6 1E-17 3.4E-22 204.7 -5.5 56 572-627 4-66 (461)
66 3o53_A Protein LRIM1, AGAP0063 99.6 2.7E-16 9.3E-21 180.2 4.5 255 562-880 24-281 (317)
67 1z7x_W Ribonuclease inhibitor; 99.6 1.2E-17 4.1E-22 204.0 -10.3 60 569-628 54-124 (461)
68 3qfl_A MLA10; coiled-coil, (CC 99.6 3.7E-15 1.3E-19 137.5 8.7 81 12-92 2-84 (115)
69 1ozn_A Reticulon 4 receptor; N 99.6 4.7E-15 1.6E-19 167.4 11.5 199 571-813 32-236 (285)
70 1ozn_A Reticulon 4 receptor; N 99.6 1.2E-14 4E-19 164.1 14.8 94 574-670 14-110 (285)
71 1wwl_A Monocyte differentiatio 99.6 4.1E-15 1.4E-19 169.9 10.7 202 569-813 93-307 (312)
72 1wwl_A Monocyte differentiatio 99.6 5.7E-16 1.9E-20 177.1 2.6 96 573-670 65-178 (312)
73 2xwt_C Thyrotropin receptor; s 99.5 5.5E-14 1.9E-18 153.8 16.3 213 1170-1419 20-239 (239)
74 1h6u_A Internalin H; cell adhe 99.5 1E-14 3.5E-19 165.8 10.6 190 569-813 39-228 (308)
75 3oja_A Leucine-rich immune mol 99.5 3.9E-15 1.3E-19 180.7 7.5 237 569-869 32-270 (487)
76 2p1m_B Transport inhibitor res 99.5 7.8E-16 2.7E-20 194.8 0.5 255 831-1115 65-348 (594)
77 2p1m_B Transport inhibitor res 99.5 3E-16 1E-20 198.5 -3.7 133 1205-1344 369-518 (594)
78 2xwt_C Thyrotropin receptor; s 99.5 4.7E-14 1.6E-18 154.3 14.1 95 572-668 32-130 (239)
79 2z62_A TOLL-like receptor 4, v 99.5 2E-14 6.7E-19 161.4 11.1 201 571-813 28-235 (276)
80 1p9a_G Platelet glycoprotein I 99.5 6.7E-14 2.3E-18 157.3 15.0 198 569-813 8-206 (290)
81 3rfs_A Internalin B, repeat mo 99.5 3.1E-14 1.1E-18 159.0 11.3 98 569-670 39-138 (272)
82 3oja_A Leucine-rich immune mol 99.5 6.7E-14 2.3E-18 169.8 14.4 215 1183-1418 33-249 (487)
83 3o53_A Protein LRIM1, AGAP0063 99.5 8.3E-14 2.8E-18 159.5 13.9 214 1184-1417 34-248 (317)
84 2o6q_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 153.1 15.6 195 573-813 18-216 (270)
85 4ay9_X Follicle-stimulating ho 99.5 3.2E-13 1.1E-17 156.9 17.6 94 574-670 12-109 (350)
86 1p9a_G Platelet glycoprotein I 99.5 8.5E-14 2.9E-18 156.4 11.0 175 571-791 31-207 (290)
87 2ast_B S-phase kinase-associat 99.4 8.5E-15 2.9E-19 170.1 -0.2 104 567-670 64-173 (336)
88 4glp_A Monocyte differentiatio 99.4 3.7E-13 1.2E-17 153.6 12.7 205 569-813 89-305 (310)
89 2z62_A TOLL-like receptor 4, v 99.4 2E-12 6.7E-17 145.0 18.3 228 1183-1440 27-271 (276)
90 3m19_A Variable lymphocyte rec 99.4 1.6E-12 5.5E-17 143.1 14.6 172 571-813 14-190 (251)
91 1h6u_A Internalin H; cell adhe 99.4 3E-13 1E-17 153.7 8.8 172 566-791 58-229 (308)
92 1h6t_A Internalin B; cell adhe 99.4 7.1E-13 2.4E-17 149.1 10.5 168 569-813 44-211 (291)
93 4ay9_X Follicle-stimulating ho 99.4 8.1E-12 2.8E-16 145.0 19.5 218 1158-1391 28-254 (350)
94 2o6q_A Variable lymphocyte rec 99.4 2.1E-12 7.2E-17 144.0 13.8 178 571-792 37-218 (270)
95 1w5s_A Origin recognition comp 99.3 9.5E-12 3.3E-16 148.9 18.3 278 190-487 57-387 (412)
96 2ast_B S-phase kinase-associat 99.3 2E-13 6.7E-18 158.6 3.1 83 569-651 91-178 (336)
97 2ca6_A RAN GTPase-activating p 99.3 8.5E-14 2.9E-18 164.7 -1.9 90 563-652 24-133 (386)
98 4ezg_A Putative uncharacterize 99.3 2.2E-12 7.5E-17 135.9 8.8 100 569-670 42-141 (197)
99 3rfs_A Internalin B, repeat mo 99.3 1.3E-11 4.3E-16 137.7 15.0 207 1006-1280 39-246 (272)
100 1m9s_A Internalin B; cell inva 99.3 2.5E-12 8.4E-17 158.8 9.8 169 569-814 41-209 (605)
101 4glp_A Monocyte differentiatio 99.3 9.9E-12 3.4E-16 141.7 13.2 55 1359-1417 251-305 (310)
102 3cvr_A Invasion plasmid antige 99.3 3.5E-12 1.2E-16 155.3 9.7 178 571-816 59-244 (571)
103 1xeu_A Internalin C; cellular 99.3 1.6E-12 5.3E-17 143.7 5.5 167 569-813 17-183 (263)
104 2qen_A Walker-type ATPase; unk 99.3 6.1E-11 2.1E-15 138.4 18.2 271 187-492 33-349 (350)
105 2ca6_A RAN GTPase-activating p 99.2 1.4E-13 4.8E-18 162.9 -5.4 207 571-813 9-255 (386)
106 3m19_A Variable lymphocyte rec 99.2 2.9E-11 9.8E-16 133.0 12.9 98 571-670 35-136 (251)
107 2v9t_B SLIT homolog 2 protein 99.2 4.3E-11 1.5E-15 128.1 13.6 94 574-670 14-109 (220)
108 3goz_A Leucine-rich repeat-con 99.2 1.3E-12 4.5E-17 152.6 1.4 84 569-652 20-120 (362)
109 2o6s_A Variable lymphocyte rec 99.2 3.4E-11 1.2E-15 128.2 11.2 93 574-670 10-105 (208)
110 3e6j_A Variable lymphocyte rec 99.2 7.9E-11 2.7E-15 127.1 13.7 82 574-659 22-105 (229)
111 1h6t_A Internalin B; cell adhe 99.2 1.9E-11 6.7E-16 137.3 8.1 99 566-670 63-161 (291)
112 2v70_A SLIT-2, SLIT homolog 2 99.2 8.2E-11 2.8E-15 125.9 12.2 93 574-670 14-110 (220)
113 2fna_A Conserved hypothetical 99.2 3.9E-10 1.3E-14 132.0 18.9 272 187-491 32-356 (357)
114 1m9s_A Internalin B; cell inva 99.2 1.5E-11 5.1E-16 151.8 7.0 166 571-813 21-186 (605)
115 2xot_A Amphoterin-induced prot 99.1 4.9E-11 1.7E-15 139.0 8.4 93 574-670 21-117 (361)
116 3goz_A Leucine-rich repeat-con 99.1 5E-12 1.7E-16 147.7 -0.1 84 568-652 47-149 (362)
117 3cvr_A Invasion plasmid antige 99.1 1.3E-10 4.4E-15 141.5 12.2 186 1008-1277 59-251 (571)
118 1xeu_A Internalin C; cellular 99.1 7.4E-11 2.5E-15 130.2 9.0 97 567-670 37-133 (263)
119 1dce_A Protein (RAB geranylger 99.1 1.8E-12 6.1E-17 159.2 -5.2 69 591-670 346-414 (567)
120 2ell_A Acidic leucine-rich nuc 99.0 1.5E-10 5E-15 118.4 6.7 100 569-670 22-125 (168)
121 2v9t_B SLIT homolog 2 protein 99.0 1.6E-10 5.5E-15 123.7 7.0 123 541-672 32-159 (220)
122 3e6j_A Variable lymphocyte rec 99.0 2.9E-10 9.8E-15 122.7 9.0 98 571-670 40-140 (229)
123 2ell_A Acidic leucine-rich nuc 99.0 1.9E-10 6.4E-15 117.6 6.8 110 563-675 41-157 (168)
124 4ezg_A Putative uncharacterize 99.0 1.2E-09 4E-14 114.8 12.2 146 1183-1342 43-191 (197)
125 2je0_A Acidic leucine-rich nuc 99.0 1.3E-10 4.4E-15 116.1 4.3 105 564-671 35-146 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.0 2.7E-10 9.1E-15 117.3 6.1 127 536-673 14-148 (176)
127 2o6s_A Variable lymphocyte rec 99.0 3.5E-09 1.2E-13 112.5 14.9 163 1183-1384 27-190 (208)
128 4b8c_D Glucose-repressible alc 99.0 4.1E-10 1.4E-14 143.0 8.3 104 566-671 219-322 (727)
129 4b8c_D Glucose-repressible alc 99.0 7.5E-11 2.6E-15 149.8 1.4 120 537-664 220-339 (727)
130 2qby_B CDC6 homolog 3, cell di 99.0 1.6E-08 5.5E-13 119.3 21.1 264 187-474 47-339 (384)
131 2wfh_A SLIT homolog 2 protein 99.0 6.9E-10 2.3E-14 115.8 7.7 100 571-672 31-133 (193)
132 2je0_A Acidic leucine-rich nuc 99.0 4E-10 1.4E-14 112.4 5.4 101 569-671 15-119 (149)
133 2v70_A SLIT-2, SLIT homolog 2 99.0 8.2E-10 2.8E-14 118.1 8.1 105 567-672 53-160 (220)
134 2v1u_A Cell division control p 98.9 1.2E-08 4E-13 120.9 18.8 266 187-474 46-351 (387)
135 2xot_A Amphoterin-induced prot 98.9 9.2E-10 3.2E-14 128.2 7.8 97 572-670 40-141 (361)
136 1w8a_A SLIT protein; signaling 98.9 1.7E-09 5.9E-14 112.8 8.8 94 574-670 11-107 (192)
137 1fnn_A CDC6P, cell division co 98.9 1.1E-07 3.8E-12 112.4 24.8 267 187-474 46-351 (389)
138 2wfh_A SLIT homolog 2 protein 98.9 2.8E-09 9.4E-14 111.1 9.5 93 574-670 13-107 (193)
139 1w8a_A SLIT protein; signaling 98.9 2.1E-09 7.2E-14 112.2 7.6 99 572-671 30-132 (192)
140 1a9n_A U2A', U2A'; complex (nu 98.8 2.2E-09 7.4E-14 110.5 6.5 99 568-670 16-118 (176)
141 1dce_A Protein (RAB geranylger 98.8 2.1E-09 7.3E-14 131.9 7.4 95 572-670 442-538 (567)
142 2r9u_A Variable lymphocyte rec 98.8 7.4E-09 2.5E-13 105.7 8.3 92 575-670 16-110 (174)
143 2qby_A CDC6 homolog 1, cell di 98.8 4.9E-08 1.7E-12 115.4 16.7 266 187-473 47-347 (386)
144 2r9u_A Variable lymphocyte rec 98.8 5E-09 1.7E-13 107.0 6.3 93 571-665 33-128 (174)
145 3g39_A Variable lymphocyte rec 98.8 9.3E-09 3.2E-13 104.7 7.9 95 573-671 11-108 (170)
146 1ds9_A Outer arm dynein; leuci 98.7 2.8E-10 9.6E-15 119.8 -4.3 105 562-670 39-145 (198)
147 2o6r_A Variable lymphocyte rec 98.7 3.6E-08 1.2E-12 101.5 10.7 83 573-659 9-93 (177)
148 3sb4_A Hypothetical leucine ri 98.7 6.1E-08 2.1E-12 111.2 13.7 100 565-670 42-153 (329)
149 1ds9_A Outer arm dynein; leuci 98.7 5.6E-10 1.9E-14 117.4 -3.5 95 573-671 25-121 (198)
150 2o6r_A Variable lymphocyte rec 98.7 2.2E-08 7.7E-13 103.0 8.4 98 571-670 28-129 (177)
151 3sb4_A Hypothetical leucine ri 98.7 2.1E-07 7.2E-12 106.7 16.2 58 1206-1265 224-283 (329)
152 3g39_A Variable lymphocyte rec 98.6 3.5E-08 1.2E-12 100.4 6.9 86 571-658 30-118 (170)
153 1njg_A DNA polymerase III subu 98.6 2.8E-07 9.5E-12 101.1 14.0 106 263-372 124-231 (250)
154 2ifg_A High affinity nerve gro 98.5 1.3E-07 4.6E-12 109.5 8.6 92 576-670 13-108 (347)
155 2chg_A Replication factor C sm 98.5 9.9E-07 3.4E-11 94.9 13.5 160 188-369 41-204 (226)
156 2ifg_A High affinity nerve gro 98.3 6.1E-07 2.1E-11 103.9 6.5 89 562-652 23-114 (347)
157 1hqc_A RUVB; extended AAA-ATPa 98.2 1.7E-06 5.9E-11 98.9 8.9 240 187-473 40-324 (324)
158 1sxj_B Activator 1 37 kDa subu 98.2 5.3E-06 1.8E-10 94.9 12.2 163 188-371 45-212 (323)
159 4fdw_A Leucine rich hypothetic 98.2 4.5E-05 1.6E-09 89.0 19.2 249 1161-1434 136-394 (401)
160 4fdw_A Leucine rich hypothetic 98.1 0.00012 4.1E-09 85.4 21.5 74 1009-1090 136-211 (401)
161 4fs7_A Uncharacterized protein 98.1 0.0001 3.5E-09 86.5 20.7 44 1005-1052 68-111 (394)
162 4fs7_A Uncharacterized protein 97.9 0.00038 1.3E-08 81.6 20.3 64 583-649 59-125 (394)
163 3un9_A NLR family member X1; l 97.8 2E-06 6.7E-11 99.5 -1.2 82 570-652 71-166 (372)
164 2z4s_A Chromosomal replication 97.8 7.3E-05 2.5E-09 88.3 12.0 158 186-365 131-302 (440)
165 1iqp_A RFCS; clamp loader, ext 97.8 6.2E-05 2.1E-09 86.1 10.5 158 188-370 49-213 (327)
166 3te6_A Regulatory protein SIR3 97.7 0.00037 1.3E-08 76.9 15.3 145 188-335 48-211 (318)
167 3bos_A Putative DNA replicatio 97.6 3.2E-05 1.1E-09 84.0 5.4 150 187-368 54-216 (242)
168 2ra8_A Uncharacterized protein 97.6 3.5E-05 1.2E-09 88.0 5.8 55 1228-1285 168-227 (362)
169 4gt6_A Cell surface protein; l 97.6 0.0015 5.1E-08 76.5 19.5 36 1005-1040 84-121 (394)
170 2ra8_A Uncharacterized protein 97.6 2.7E-05 9.2E-10 89.0 3.9 63 1200-1265 164-228 (362)
171 1jr3_A DNA polymerase III subu 97.6 0.00035 1.2E-08 81.5 12.9 103 263-369 117-221 (373)
172 2chq_A Replication factor C sm 97.5 0.00034 1.1E-08 79.6 12.0 156 188-367 41-202 (319)
173 3e4g_A ATP synthase subunit S, 97.5 1.8E-05 6.3E-10 78.4 0.9 90 1305-1398 62-154 (176)
174 3rw6_A Nuclear RNA export fact 97.5 5.6E-05 1.9E-09 81.4 4.7 78 569-647 168-257 (267)
175 3e4g_A ATP synthase subunit S, 97.5 7.1E-05 2.4E-09 74.2 4.2 94 951-1048 61-154 (176)
176 1a5t_A Delta prime, HOLB; zinc 97.4 0.0012 4.1E-08 75.0 14.0 96 264-368 107-204 (334)
177 3un9_A NLR family member X1; l 97.3 7.6E-05 2.6E-09 86.1 2.4 105 564-670 118-244 (372)
178 4gt6_A Cell surface protein; l 97.3 0.003 1E-07 74.0 15.9 57 1004-1064 110-168 (394)
179 4h09_A Hypothetical leucine ri 97.2 0.021 7.3E-07 66.3 23.0 77 1006-1090 44-121 (379)
180 4h09_A Hypothetical leucine ri 97.2 0.012 4.1E-07 68.4 20.8 57 1204-1263 259-317 (379)
181 3rw6_A Nuclear RNA export fact 97.2 7.7E-05 2.6E-09 80.3 1.6 96 576-673 148-259 (267)
182 1l8q_A Chromosomal replication 97.1 0.0006 2E-08 77.4 8.0 151 187-362 39-201 (324)
183 3pfi_A Holliday junction ATP-d 97.1 0.0061 2.1E-07 69.6 15.9 148 188-368 58-226 (338)
184 1sxj_D Activator 1 41 kDa subu 97.1 0.003 1E-07 72.8 13.3 171 188-368 61-234 (353)
185 2w58_A DNAI, primosome compone 97.0 0.00028 9.6E-09 73.8 3.7 100 187-305 56-159 (202)
186 3ec2_A DNA replication protein 97.0 0.00071 2.4E-08 69.1 6.1 101 187-305 40-143 (180)
187 1sxj_E Activator 1 40 kDa subu 96.9 0.0026 8.9E-08 73.3 11.1 103 264-369 133-237 (354)
188 1io0_A Tropomodulin; LRR prote 96.9 0.00025 8.5E-09 72.7 2.0 83 569-652 34-134 (185)
189 3pvs_A Replication-associated 96.9 0.0026 8.9E-08 74.7 10.9 153 188-366 53-212 (447)
190 3syl_A Protein CBBX; photosynt 96.9 0.0023 8E-08 72.0 10.3 131 187-336 69-218 (309)
191 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0033 1.1E-07 68.8 11.2 157 187-367 41-220 (262)
192 1d2n_A N-ethylmaleimide-sensit 96.9 0.0043 1.5E-07 68.2 12.0 144 188-360 67-228 (272)
193 3h4m_A Proteasome-activating n 96.9 0.0017 5.7E-08 72.2 8.6 154 188-367 54-229 (285)
194 1sxj_A Activator 1 95 kDa subu 96.8 0.0015 5.1E-08 79.0 8.2 167 187-370 79-254 (516)
195 1io0_A Tropomodulin; LRR prote 96.8 0.00059 2E-08 69.8 3.7 113 537-652 32-162 (185)
196 2qp9_X Vacuolar protein sortin 96.7 0.0061 2.1E-07 69.6 11.7 156 187-369 86-261 (355)
197 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.014 4.9E-07 65.5 14.4 160 187-370 47-224 (322)
198 1jbk_A CLPB protein; beta barr 96.7 0.0013 4.3E-08 68.3 5.1 21 188-208 46-66 (195)
199 3uk6_A RUVB-like 2; hexameric 96.6 0.0038 1.3E-07 72.3 9.3 93 266-366 190-300 (368)
200 2kjq_A DNAA-related protein; s 96.6 0.0011 3.6E-08 64.8 3.4 37 187-225 38-74 (149)
201 3eie_A Vacuolar protein sortin 96.5 0.0071 2.4E-07 68.2 10.3 157 187-369 53-228 (322)
202 2gno_A DNA polymerase III, gam 96.5 0.0058 2E-07 67.7 9.1 128 189-335 22-152 (305)
203 1sxj_C Activator 1 40 kDa subu 96.3 0.015 5.1E-07 66.2 11.6 150 188-364 49-207 (340)
204 3n70_A Transport activator; si 96.3 0.0042 1.4E-07 60.5 5.6 89 188-304 27-115 (145)
205 2zan_A Vacuolar protein sortin 96.2 0.025 8.5E-07 66.7 12.9 159 187-369 169-345 (444)
206 3u61_B DNA polymerase accessor 96.1 0.013 4.5E-07 66.3 9.4 147 189-364 52-211 (324)
207 3cf0_A Transitional endoplasmi 95.9 0.044 1.5E-06 60.9 12.7 152 187-364 51-223 (301)
208 3b9p_A CG5977-PA, isoform A; A 95.9 0.058 2E-06 59.9 13.8 155 187-369 56-233 (297)
209 3d8b_A Fidgetin-like protein 1 95.9 0.025 8.7E-07 64.6 11.0 158 187-370 119-296 (357)
210 3rfe_A Platelet glycoprotein I 95.7 0.01 3.5E-07 56.1 5.5 52 575-628 12-66 (130)
211 2cvh_A DNA repair and recombin 95.7 0.023 8E-07 59.9 9.1 83 187-275 22-115 (220)
212 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0046 1.6E-07 67.3 3.3 66 188-276 126-193 (331)
213 4b4t_J 26S protease regulatory 95.7 0.036 1.2E-06 62.7 10.6 149 187-362 184-354 (405)
214 3co5_A Putative two-component 95.6 0.0072 2.5E-07 58.6 3.9 85 188-304 30-115 (143)
215 3vfd_A Spastin; ATPase, microt 95.1 0.16 5.4E-06 58.9 14.0 158 187-369 150-326 (389)
216 2qgz_A Helicase loader, putati 95.1 0.0071 2.4E-07 67.3 2.1 35 187-223 154-189 (308)
217 4fcw_A Chaperone protein CLPB; 95.0 0.055 1.9E-06 60.7 9.4 109 187-304 49-169 (311)
218 1g5t_A COB(I)alamin adenosyltr 95.0 0.009 3.1E-07 60.0 2.4 117 187-305 30-163 (196)
219 3io5_A Recombination and repai 95.0 0.053 1.8E-06 58.7 8.4 82 188-276 31-122 (333)
220 4b4t_K 26S protease regulatory 94.9 0.044 1.5E-06 63.1 8.0 21 187-207 208-228 (428)
221 3hr8_A Protein RECA; alpha and 94.8 0.049 1.7E-06 61.1 8.1 83 187-276 63-150 (356)
222 1lv7_A FTSH; alpha/beta domain 94.7 0.17 5.8E-06 54.7 12.1 127 188-335 48-195 (257)
223 2bjv_A PSP operon transcriptio 94.7 0.067 2.3E-06 58.3 8.8 21 188-208 32-52 (265)
224 1xp8_A RECA protein, recombina 94.6 0.073 2.5E-06 60.2 9.0 82 187-275 76-162 (366)
225 4b4t_H 26S protease regulatory 94.6 0.099 3.4E-06 60.0 10.0 150 187-362 245-415 (467)
226 2p65_A Hypothetical protein PF 94.6 0.011 3.6E-07 60.7 1.9 21 188-208 46-66 (187)
227 2r62_A Cell division protease 94.5 0.013 4.4E-07 64.2 2.2 21 188-208 47-67 (268)
228 1in4_A RUVB, holliday junction 94.4 0.3 1E-05 55.0 13.5 47 316-366 174-220 (334)
229 3hu3_A Transitional endoplasmi 94.4 0.08 2.7E-06 62.7 8.9 155 188-368 241-414 (489)
230 2ce7_A Cell division protein F 94.2 0.11 3.7E-06 61.0 9.4 149 188-362 52-221 (476)
231 4b4t_L 26S protease subunit RP 94.1 0.12 3.9E-06 59.7 9.3 149 187-362 217-387 (437)
232 1ojl_A Transcriptional regulat 94.1 0.12 4.1E-06 57.3 9.2 21 188-208 28-48 (304)
233 2b8t_A Thymidine kinase; deoxy 94.1 0.02 6.7E-07 59.6 2.5 112 187-306 14-127 (223)
234 4b4t_I 26S protease regulatory 93.9 0.077 2.6E-06 60.2 7.0 149 187-362 218-388 (437)
235 2zr9_A Protein RECA, recombina 93.9 0.12 4.2E-06 58.2 8.7 83 187-276 63-150 (349)
236 3pxi_A Negative regulator of g 93.8 0.11 3.7E-06 66.3 9.2 126 187-334 523-674 (758)
237 1ofh_A ATP-dependent HSL prote 93.8 0.11 3.8E-06 58.1 8.4 21 187-207 52-72 (310)
238 1v5w_A DMC1, meiotic recombina 93.7 0.1 3.4E-06 59.0 7.7 55 187-242 124-182 (343)
239 1u94_A RECA protein, recombina 93.7 0.12 3.9E-06 58.4 8.0 82 187-275 65-151 (356)
240 2z43_A DNA repair and recombin 93.5 0.1 3.5E-06 58.5 7.3 55 187-242 109-167 (324)
241 1n0w_A DNA repair protein RAD5 93.5 0.11 3.9E-06 55.5 7.4 88 187-275 26-129 (243)
242 3m6a_A ATP-dependent protease 93.4 0.18 6.2E-06 60.9 9.8 21 187-207 110-130 (543)
243 2c9o_A RUVB-like 1; hexameric 93.3 0.2 6.8E-06 59.3 9.8 91 268-366 298-407 (456)
244 2x8a_A Nuclear valosin-contain 93.3 0.27 9.2E-06 53.4 10.1 126 188-335 47-191 (274)
245 2i1q_A DNA repair and recombin 92.9 0.097 3.3E-06 58.8 6.0 87 187-274 100-213 (322)
246 2w0m_A SSO2452; RECA, SSPF, un 92.7 0.16 5.6E-06 53.8 7.2 114 187-305 25-168 (235)
247 1qvr_A CLPB protein; coiled co 92.6 0.23 7.9E-06 64.0 9.6 131 187-334 193-344 (854)
248 3pxg_A Negative regulator of g 92.4 0.14 4.8E-06 60.7 6.7 123 188-335 204-338 (468)
249 3rfe_A Platelet glycoprotein I 92.3 0.11 3.8E-06 48.9 4.5 53 597-652 11-66 (130)
250 3dm5_A SRP54, signal recogniti 92.3 5.9 0.0002 45.5 19.6 22 186-207 101-122 (443)
251 1jr3_D DNA polymerase III, del 91.8 1.1 3.8E-05 50.6 13.1 153 188-367 21-183 (343)
252 2dhr_A FTSH; AAA+ protein, hex 91.7 0.5 1.7E-05 55.8 10.1 123 188-335 67-214 (499)
253 1r6b_X CLPA protein; AAA+, N-t 91.6 0.8 2.7E-05 58.3 12.8 132 188-335 210-362 (758)
254 3t15_A Ribulose bisphosphate c 91.6 0.14 4.8E-06 56.4 5.0 22 187-208 38-59 (293)
255 2r44_A Uncharacterized protein 91.4 0.54 1.9E-05 52.9 9.9 129 188-336 49-199 (331)
256 3cf2_A TER ATPase, transitiona 91.4 0.48 1.6E-05 59.1 9.9 150 187-362 240-407 (806)
257 2px0_A Flagellar biosynthesis 91.4 0.34 1.2E-05 53.1 7.8 85 186-274 106-191 (296)
258 3bh0_A DNAB-like replicative h 90.8 0.57 2E-05 52.0 9.0 50 187-240 70-119 (315)
259 3lda_A DNA repair protein RAD5 89.8 0.5 1.7E-05 54.1 7.6 55 187-242 180-238 (400)
260 1r6b_X CLPA protein; AAA+, N-t 89.7 0.28 9.7E-06 62.5 6.1 20 188-207 491-510 (758)
261 1qvr_A CLPB protein; coiled co 89.3 0.43 1.5E-05 61.5 7.3 21 187-207 590-610 (854)
262 4a74_A DNA repair and recombin 89.2 0.5 1.7E-05 49.8 6.7 43 187-229 27-73 (231)
263 4b4t_M 26S protease regulatory 89.1 0.11 3.8E-06 59.7 1.5 149 187-362 217-387 (434)
264 1sky_E F1-ATPase, F1-ATP synth 89.1 0.56 1.9E-05 54.1 7.2 48 188-237 154-203 (473)
265 1qhx_A CPT, protein (chloramph 89.0 0.15 5.2E-06 51.4 2.3 21 187-207 5-25 (178)
266 3pxi_A Negative regulator of g 88.9 0.57 1.9E-05 59.6 8.0 125 188-335 204-338 (758)
267 4a1f_A DNAB helicase, replicat 88.8 0.75 2.6E-05 51.1 7.9 50 187-240 48-97 (338)
268 3ice_A Transcription terminati 88.7 0.29 1E-05 54.4 4.3 40 187-227 176-216 (422)
269 1pzn_A RAD51, DNA repair and r 88.7 0.4 1.4E-05 54.1 5.7 89 187-276 133-242 (349)
270 3kb2_A SPBC2 prophage-derived 88.6 0.17 5.7E-06 50.7 2.3 21 187-207 3-23 (173)
271 3lw7_A Adenylate kinase relate 88.5 0.17 5.7E-06 50.9 2.2 19 187-205 3-21 (179)
272 1odf_A YGR205W, hypothetical 3 88.3 1.1 3.7E-05 48.9 8.6 78 187-264 33-117 (290)
273 1ex7_A Guanylate kinase; subst 88.2 0.23 7.9E-06 49.9 2.9 21 187-207 3-23 (186)
274 3vaa_A Shikimate kinase, SK; s 88.0 0.19 6.5E-06 51.7 2.2 21 187-207 27-47 (199)
275 1zp6_A Hypothetical protein AT 87.8 0.2 6.9E-06 51.1 2.3 22 187-208 11-32 (191)
276 1kag_A SKI, shikimate kinase I 87.8 0.21 7.2E-06 50.0 2.4 21 187-207 6-26 (173)
277 1ly1_A Polynucleotide kinase; 87.3 0.22 7.7E-06 50.2 2.3 21 187-207 4-24 (181)
278 3trf_A Shikimate kinase, SK; a 87.3 0.23 7.7E-06 50.4 2.3 21 187-207 7-27 (185)
279 2ffh_A Protein (FFH); SRP54, s 87.2 0.97 3.3E-05 52.0 7.6 22 186-207 99-120 (425)
280 3cmu_A Protein RECA, recombina 87.1 0.79 2.7E-05 62.7 7.8 82 187-275 1429-1515(2050)
281 1fx0_B ATP synthase beta chain 87.1 1.2 4E-05 51.6 8.1 86 188-274 168-275 (498)
282 2ck3_D ATP synthase subunit be 86.9 1.8 6.2E-05 49.8 9.5 51 188-239 156-207 (482)
283 1kgd_A CASK, peripheral plasma 86.9 0.26 8.8E-06 49.7 2.4 21 187-207 7-27 (180)
284 1vma_A Cell division protein F 86.8 0.61 2.1E-05 51.2 5.5 87 186-275 105-196 (306)
285 1ypw_A Transitional endoplasmi 86.6 1.2 4.2E-05 56.5 8.9 128 187-335 240-385 (806)
286 3t61_A Gluconokinase; PSI-biol 86.5 0.27 9.1E-06 50.8 2.3 21 187-207 20-40 (202)
287 2orw_A Thymidine kinase; TMTK, 86.5 0.084 2.9E-06 53.4 -1.5 107 188-305 6-113 (184)
288 1via_A Shikimate kinase; struc 86.3 0.27 9.3E-06 49.3 2.2 21 187-207 6-26 (175)
289 3iij_A Coilin-interacting nucl 86.2 0.29 1E-05 49.3 2.4 21 187-207 13-33 (180)
290 3uie_A Adenylyl-sulfate kinase 85.9 0.3 1E-05 50.2 2.4 21 187-207 27-47 (200)
291 1zuh_A Shikimate kinase; alpha 85.9 0.3 1E-05 48.6 2.3 22 186-207 8-29 (168)
292 1kht_A Adenylate kinase; phosp 85.8 0.29 1E-05 49.9 2.2 21 187-207 5-25 (192)
293 1ye8_A Protein THEP1, hypothet 85.6 0.33 1.1E-05 48.6 2.4 21 188-208 3-23 (178)
294 2jaq_A Deoxyguanosine kinase; 85.6 0.3 1E-05 50.4 2.2 20 188-207 3-22 (205)
295 1nks_A Adenylate kinase; therm 85.6 0.3 1E-05 49.9 2.2 21 187-207 3-23 (194)
296 1y63_A LMAJ004144AAA protein; 85.5 0.32 1.1E-05 49.2 2.3 21 187-207 12-32 (184)
297 1knq_A Gluconate kinase; ALFA/ 85.5 0.33 1.1E-05 48.6 2.4 21 187-207 10-30 (175)
298 4eun_A Thermoresistant glucoki 85.5 0.33 1.1E-05 50.0 2.4 21 187-207 31-51 (200)
299 2iyv_A Shikimate kinase, SK; t 85.3 0.33 1.1E-05 49.2 2.3 21 187-207 4-24 (184)
300 2qor_A Guanylate kinase; phosp 85.3 0.34 1.1E-05 50.1 2.4 21 187-207 14-34 (204)
301 4gp7_A Metallophosphoesterase; 85.2 0.31 1.1E-05 48.6 2.0 21 187-207 11-31 (171)
302 1j8m_F SRP54, signal recogniti 85.2 1.3 4.3E-05 48.5 7.0 89 186-276 99-191 (297)
303 2rhm_A Putative kinase; P-loop 85.1 0.33 1.1E-05 49.5 2.2 21 187-207 7-27 (193)
304 3a00_A Guanylate kinase, GMP k 85.1 0.37 1.3E-05 48.8 2.5 21 187-207 3-23 (186)
305 1xjc_A MOBB protein homolog; s 85.1 0.57 1.9E-05 46.0 3.7 22 186-207 5-26 (169)
306 2bdt_A BH3686; alpha-beta prot 85.0 0.36 1.2E-05 49.1 2.4 21 187-207 4-24 (189)
307 1pgv_A TMD-1, tropomodulin TMD 84.9 0.52 1.8E-05 47.6 3.4 82 569-651 39-136 (197)
308 2if2_A Dephospho-COA kinase; a 84.9 0.34 1.2E-05 50.0 2.2 21 187-207 3-23 (204)
309 3c8u_A Fructokinase; YP_612366 84.7 0.32 1.1E-05 50.4 1.9 21 187-207 24-44 (208)
310 3tr0_A Guanylate kinase, GMP k 84.7 0.37 1.3E-05 49.8 2.4 21 187-207 9-29 (205)
311 3cm0_A Adenylate kinase; ATP-b 84.6 0.37 1.3E-05 48.9 2.2 21 187-207 6-26 (186)
312 2pt5_A Shikimate kinase, SK; a 84.5 0.37 1.3E-05 47.8 2.2 20 188-207 3-22 (168)
313 1e6c_A Shikimate kinase; phosp 84.5 0.38 1.3E-05 48.1 2.3 21 187-207 4-24 (173)
314 2z0h_A DTMP kinase, thymidylat 84.3 0.94 3.2E-05 46.3 5.3 20 188-207 3-22 (197)
315 2ze6_A Isopentenyl transferase 84.2 0.38 1.3E-05 51.6 2.2 21 187-207 3-23 (253)
316 1lvg_A Guanylate kinase, GMP k 84.2 0.43 1.5E-05 48.9 2.5 21 187-207 6-26 (198)
317 1jjv_A Dephospho-COA kinase; P 84.2 0.41 1.4E-05 49.5 2.4 21 187-207 4-24 (206)
318 1ls1_A Signal recognition part 84.2 1.8 6.2E-05 47.3 7.7 86 186-274 99-189 (295)
319 2yvu_A Probable adenylyl-sulfa 84.1 0.4 1.4E-05 48.6 2.3 22 187-208 15-36 (186)
320 2qt1_A Nicotinamide riboside k 84.1 0.46 1.6E-05 49.1 2.8 21 187-207 23-43 (207)
321 3l0o_A Transcription terminati 83.9 2.2 7.4E-05 47.5 7.9 38 188-226 178-216 (427)
322 3fwy_A Light-independent proto 83.9 0.41 1.4E-05 52.9 2.4 39 184-224 47-85 (314)
323 1tev_A UMP-CMP kinase; ploop, 83.9 0.41 1.4E-05 48.9 2.3 21 187-207 5-25 (196)
324 2j41_A Guanylate kinase; GMP, 83.7 0.43 1.5E-05 49.3 2.4 21 187-207 8-28 (207)
325 2cdn_A Adenylate kinase; phosp 83.6 0.43 1.5E-05 49.1 2.3 21 187-207 22-42 (201)
326 2grj_A Dephospho-COA kinase; T 83.6 0.44 1.5E-05 48.3 2.3 21 187-207 14-34 (192)
327 3tau_A Guanylate kinase, GMP k 83.6 0.44 1.5E-05 49.3 2.4 21 187-207 10-30 (208)
328 2c95_A Adenylate kinase 1; tra 83.5 0.43 1.5E-05 48.9 2.2 21 187-207 11-31 (196)
329 1cke_A CK, MSSA, protein (cyti 83.5 0.43 1.5E-05 50.3 2.3 21 187-207 7-27 (227)
330 3a4m_A L-seryl-tRNA(SEC) kinas 83.5 0.42 1.5E-05 51.5 2.3 21 187-207 6-26 (260)
331 2bwj_A Adenylate kinase 5; pho 83.4 0.43 1.5E-05 49.0 2.2 21 187-207 14-34 (199)
332 3asz_A Uridine kinase; cytidin 83.2 0.47 1.6E-05 49.3 2.4 21 187-207 8-28 (211)
333 2xxa_A Signal recognition part 83.2 2.1 7E-05 49.6 7.9 37 186-224 101-138 (433)
334 3jvv_A Twitching mobility prot 83.1 0.37 1.3E-05 54.2 1.7 109 187-308 125-234 (356)
335 2qe7_A ATP synthase subunit al 83.0 0.96 3.3E-05 52.3 5.0 83 188-274 165-263 (502)
336 2pbr_A DTMP kinase, thymidylat 82.9 0.47 1.6E-05 48.5 2.2 20 188-207 3-22 (195)
337 2bbw_A Adenylate kinase 4, AK4 82.8 0.49 1.7E-05 50.5 2.4 21 187-207 29-49 (246)
338 2plr_A DTMP kinase, probable t 82.8 0.48 1.6E-05 49.3 2.3 21 187-207 6-26 (213)
339 3kl4_A SRP54, signal recogniti 82.7 2.1 7.1E-05 49.3 7.7 87 186-275 98-189 (433)
340 1nn5_A Similar to deoxythymidy 82.7 1.1 3.7E-05 46.5 5.1 21 187-207 11-31 (215)
341 1z6g_A Guanylate kinase; struc 82.6 0.54 1.8E-05 49.0 2.6 21 187-207 25-45 (218)
342 2vli_A Antibiotic resistance p 82.5 0.37 1.2E-05 48.7 1.2 21 187-207 7-27 (183)
343 3mfy_A V-type ATP synthase alp 82.5 2.2 7.4E-05 49.8 7.6 45 188-236 230-275 (588)
344 1ukz_A Uridylate kinase; trans 82.5 0.57 1.9E-05 48.2 2.7 22 186-207 16-37 (203)
345 3fb4_A Adenylate kinase; psych 82.4 0.51 1.7E-05 49.2 2.3 20 188-207 3-22 (216)
346 3hjn_A DTMP kinase, thymidylat 82.3 1.3 4.5E-05 45.1 5.3 20 189-208 4-23 (197)
347 1aky_A Adenylate kinase; ATP:A 82.3 0.51 1.8E-05 49.4 2.3 21 187-207 6-26 (220)
348 1htw_A HI0065; nucleotide-bind 82.2 0.57 1.9E-05 45.7 2.4 21 187-207 35-55 (158)
349 1znw_A Guanylate kinase, GMP k 82.2 0.55 1.9E-05 48.6 2.4 21 187-207 22-42 (207)
350 1q57_A DNA primase/helicase; d 82.2 3.7 0.00013 49.0 10.1 51 187-240 244-294 (503)
351 3ney_A 55 kDa erythrocyte memb 82.2 0.57 1.9E-05 47.4 2.4 21 187-207 21-41 (197)
352 3dl0_A Adenylate kinase; phosp 82.1 0.52 1.8E-05 49.1 2.3 20 188-207 3-22 (216)
353 3nwj_A ATSK2; P loop, shikimat 82.1 0.54 1.9E-05 49.9 2.4 21 187-207 50-70 (250)
354 1qf9_A UMP/CMP kinase, protein 82.0 0.53 1.8E-05 48.0 2.2 21 187-207 8-28 (194)
355 3gqb_B V-type ATP synthase bet 82.0 0.63 2.2E-05 53.1 3.0 87 188-274 150-260 (464)
356 1ixz_A ATP-dependent metallopr 82.0 0.52 1.8E-05 50.6 2.3 21 188-208 52-72 (254)
357 1zd8_A GTP:AMP phosphotransfer 82.0 0.52 1.8E-05 49.6 2.2 21 187-207 9-29 (227)
358 1rz3_A Hypothetical protein rb 81.9 0.56 1.9E-05 48.2 2.3 21 187-207 24-44 (201)
359 3cmw_A Protein RECA, recombina 81.9 1.5 5.2E-05 59.2 6.9 83 187-276 385-472 (1706)
360 3cmw_A Protein RECA, recombina 81.7 1.6 5.3E-05 59.1 6.9 81 187-274 1433-1518(1706)
361 2i3b_A HCR-ntpase, human cance 81.6 0.63 2.2E-05 47.0 2.6 22 187-208 3-24 (189)
362 3aez_A Pantothenate kinase; tr 81.4 0.57 2E-05 51.7 2.3 21 187-207 92-112 (312)
363 2wwf_A Thymidilate kinase, put 81.4 0.57 1.9E-05 48.6 2.2 21 187-207 12-32 (212)
364 1uf9_A TT1252 protein; P-loop, 81.4 0.57 1.9E-05 48.2 2.2 21 187-207 10-30 (203)
365 1zak_A Adenylate kinase; ATP:A 81.2 0.58 2E-05 49.0 2.2 21 187-207 7-27 (222)
366 2f1r_A Molybdopterin-guanine d 81.1 0.51 1.7E-05 46.7 1.6 21 187-207 4-24 (171)
367 4e22_A Cytidylate kinase; P-lo 81.1 0.62 2.1E-05 49.9 2.4 21 187-207 29-49 (252)
368 3llm_A ATP-dependent RNA helic 81.1 2.2 7.5E-05 45.0 6.7 89 187-276 78-187 (235)
369 2r6a_A DNAB helicase, replicat 81.0 3.5 0.00012 48.4 9.1 48 187-237 205-252 (454)
370 3vr4_D V-type sodium ATPase su 81.0 1.7 5.8E-05 49.7 6.0 85 188-274 154-257 (465)
371 1tue_A Replication protein E1; 80.9 0.54 1.8E-05 47.4 1.7 21 188-208 61-81 (212)
372 3e70_C DPA, signal recognition 80.8 3 0.0001 46.2 7.9 22 186-207 130-151 (328)
373 2v54_A DTMP kinase, thymidylat 80.7 0.63 2.2E-05 47.9 2.3 21 187-207 6-26 (204)
374 2pez_A Bifunctional 3'-phospho 80.7 0.65 2.2E-05 46.7 2.3 21 187-207 7-27 (179)
375 2jeo_A Uridine-cytidine kinase 80.6 0.65 2.2E-05 49.5 2.4 21 187-207 27-47 (245)
376 2q6t_A DNAB replication FORK h 80.5 3.7 0.00013 48.1 9.0 51 187-240 202-252 (444)
377 1uj2_A Uridine-cytidine kinase 80.4 0.63 2.2E-05 49.8 2.2 21 187-207 24-44 (252)
378 1e4v_A Adenylate kinase; trans 80.2 0.67 2.3E-05 48.2 2.2 20 188-207 3-22 (214)
379 1fx0_A ATP synthase alpha chai 80.2 1.4 4.9E-05 50.9 5.1 81 188-274 166-264 (507)
380 1s96_A Guanylate kinase, GMP k 80.0 0.72 2.5E-05 47.9 2.4 21 187-207 18-38 (219)
381 2r9v_A ATP synthase subunit al 80.0 1.5 5E-05 50.8 5.1 83 188-274 178-276 (515)
382 1cr0_A DNA primase/helicase; R 79.8 2 6.8E-05 47.3 6.1 49 187-239 37-86 (296)
383 3be4_A Adenylate kinase; malar 79.8 0.69 2.4E-05 48.2 2.2 20 188-207 8-27 (217)
384 1iy2_A ATP-dependent metallopr 79.7 0.69 2.4E-05 50.5 2.3 21 188-208 76-96 (278)
385 3e1s_A Exodeoxyribonuclease V, 79.6 2.8 9.6E-05 50.7 7.7 102 187-302 206-313 (574)
386 1gtv_A TMK, thymidylate kinase 79.6 0.47 1.6E-05 49.4 0.8 21 187-207 2-22 (214)
387 2r8r_A Sensor protein; KDPD, P 79.5 1.6 5.4E-05 44.9 4.6 37 188-226 9-45 (228)
388 1pgv_A TMD-1, tropomodulin TMD 79.4 0.54 1.9E-05 47.4 1.2 87 566-652 65-168 (197)
389 2xb4_A Adenylate kinase; ATP-b 79.4 0.73 2.5E-05 48.2 2.2 20 188-207 3-22 (223)
390 1m7g_A Adenylylsulfate kinase; 79.3 0.75 2.6E-05 47.7 2.3 21 187-207 27-47 (211)
391 1rj9_A FTSY, signal recognitio 79.1 0.78 2.7E-05 50.4 2.4 22 186-207 103-124 (304)
392 3cmu_A Protein RECA, recombina 79.0 2.3 7.9E-05 58.2 7.2 82 186-274 1776-1862(2050)
393 1np6_A Molybdopterin-guanine d 78.9 0.82 2.8E-05 45.3 2.3 22 186-207 7-28 (174)
394 1vht_A Dephospho-COA kinase; s 78.9 0.77 2.6E-05 47.9 2.2 21 187-207 6-26 (218)
395 1gvn_B Zeta; postsegregational 78.9 0.65 2.2E-05 50.7 1.7 21 187-207 35-55 (287)
396 2f6r_A COA synthase, bifunctio 78.6 0.8 2.7E-05 49.9 2.3 21 186-206 76-96 (281)
397 2ehv_A Hypothetical protein PH 78.6 0.82 2.8E-05 48.9 2.4 21 187-207 32-52 (251)
398 1ak2_A Adenylate kinase isoenz 78.6 0.8 2.7E-05 48.3 2.3 21 187-207 18-38 (233)
399 3tlx_A Adenylate kinase 2; str 78.5 0.81 2.8E-05 48.6 2.3 21 187-207 31-51 (243)
400 3tqc_A Pantothenate kinase; bi 78.3 0.84 2.9E-05 50.3 2.4 74 187-265 94-171 (321)
401 2ck3_A ATP synthase subunit al 78.0 2.1 7.3E-05 49.6 5.6 87 188-274 165-271 (510)
402 3tif_A Uncharacterized ABC tra 77.9 0.86 2.9E-05 48.0 2.2 21 187-207 33-53 (235)
403 2pcj_A ABC transporter, lipopr 77.7 0.85 2.9E-05 47.6 2.1 21 187-207 32-52 (224)
404 3ake_A Cytidylate kinase; CMP 77.7 0.88 3E-05 47.0 2.2 21 187-207 4-24 (208)
405 2onk_A Molybdate/tungstate ABC 77.7 0.94 3.2E-05 47.8 2.4 22 186-207 25-46 (240)
406 3bgw_A DNAB-like replicative h 77.7 6.9 0.00023 45.5 10.0 49 187-239 199-247 (444)
407 1sgw_A Putative ABC transporte 77.6 0.94 3.2E-05 46.8 2.3 21 187-207 37-57 (214)
408 2c61_A A-type ATP synthase non 77.4 1.1 3.9E-05 51.4 3.2 87 188-274 155-258 (469)
409 2qtf_A Protein HFLX, GTP-bindi 77.4 2.2 7.6E-05 48.2 5.6 57 138-208 146-202 (364)
410 3d3q_A TRNA delta(2)-isopenten 77.4 0.9 3.1E-05 50.2 2.2 21 187-207 9-29 (340)
411 2zej_A Dardarin, leucine-rich 77.3 0.94 3.2E-05 45.7 2.2 21 188-208 5-25 (184)
412 2wji_A Ferrous iron transport 77.3 1 3.5E-05 44.4 2.5 22 187-208 5-26 (165)
413 3r20_A Cytidylate kinase; stru 77.2 0.98 3.4E-05 47.1 2.4 21 187-207 11-31 (233)
414 4eaq_A DTMP kinase, thymidylat 77.1 1.5 5.2E-05 45.9 3.9 22 187-208 28-49 (229)
415 2dr3_A UPF0273 protein PH0284; 77.1 1.5 5.1E-05 46.7 3.9 37 187-225 25-61 (247)
416 3lnc_A Guanylate kinase, GMP k 77.1 0.71 2.4E-05 48.7 1.3 21 187-207 29-50 (231)
417 2j37_W Signal recognition part 77.0 5.4 0.00019 46.9 8.9 22 186-207 102-123 (504)
418 2p5t_B PEZT; postsegregational 76.9 0.72 2.5E-05 49.4 1.3 21 187-207 34-54 (253)
419 1oix_A RAS-related protein RAB 76.9 0.97 3.3E-05 45.9 2.2 22 187-208 31-52 (191)
420 3umf_A Adenylate kinase; rossm 76.9 0.97 3.3E-05 46.6 2.2 22 186-207 30-51 (217)
421 2cbz_A Multidrug resistance-as 76.5 0.99 3.4E-05 47.6 2.2 21 187-207 33-53 (237)
422 3oaa_A ATP synthase subunit al 76.4 7.4 0.00025 44.9 9.4 81 188-274 165-263 (513)
423 1sq5_A Pantothenate kinase; P- 76.4 1 3.4E-05 49.9 2.3 21 187-207 82-102 (308)
424 3b85_A Phosphate starvation-in 76.3 0.8 2.7E-05 47.1 1.4 21 187-207 24-44 (208)
425 3b9q_A Chloroplast SRP recepto 76.3 1 3.5E-05 49.4 2.3 21 187-207 102-122 (302)
426 3upu_A ATP-dependent DNA helic 76.3 1.6 5.6E-05 51.4 4.3 21 188-208 48-68 (459)
427 1yrb_A ATP(GTP)binding protein 76.2 1 3.6E-05 48.5 2.4 21 187-207 16-36 (262)
428 3gfo_A Cobalt import ATP-bindi 76.2 1 3.5E-05 48.6 2.2 21 187-207 36-56 (275)
429 1b0u_A Histidine permease; ABC 76.0 1 3.5E-05 48.3 2.2 21 187-207 34-54 (262)
430 2f9l_A RAB11B, member RAS onco 75.7 1.2 3.9E-05 45.7 2.4 22 187-208 7-28 (199)
431 3cf2_A TER ATPase, transitiona 75.6 1.9 6.4E-05 53.8 4.7 68 188-276 514-581 (806)
432 4g1u_C Hemin import ATP-bindin 75.6 1.1 3.6E-05 48.3 2.2 21 187-207 39-59 (266)
433 2olj_A Amino acid ABC transpor 75.5 1.1 3.7E-05 48.0 2.2 21 187-207 52-72 (263)
434 2hf9_A Probable hydrogenase ni 75.4 1.1 3.8E-05 47.0 2.2 22 187-208 40-61 (226)
435 2dyk_A GTP-binding protein; GT 75.3 1.2 4.1E-05 43.5 2.4 22 187-208 3-24 (161)
436 1ji0_A ABC transporter; ATP bi 75.2 1.1 3.8E-05 47.3 2.2 21 187-207 34-54 (240)
437 3sr0_A Adenylate kinase; phosp 75.1 1.2 4.1E-05 45.7 2.3 20 188-207 3-22 (206)
438 4edh_A DTMP kinase, thymidylat 75.1 3.1 0.00011 42.8 5.5 22 187-208 8-29 (213)
439 2ga8_A Hypothetical 39.9 kDa p 75.1 0.91 3.1E-05 50.3 1.5 20 188-207 27-46 (359)
440 2d2e_A SUFC protein; ABC-ATPas 75.0 1.2 4.1E-05 47.4 2.4 21 187-207 31-51 (250)
441 3crm_A TRNA delta(2)-isopenten 75.0 1.1 3.9E-05 49.0 2.2 21 187-207 7-27 (323)
442 2pze_A Cystic fibrosis transme 75.0 1.2 3.9E-05 46.8 2.2 21 187-207 36-56 (229)
443 1g6h_A High-affinity branched- 75.0 1.1 3.9E-05 47.8 2.2 21 187-207 35-55 (257)
444 2ff7_A Alpha-hemolysin translo 74.8 1.2 4E-05 47.4 2.2 21 187-207 37-57 (247)
445 2j9r_A Thymidine kinase; TK1, 74.8 1.6 5.4E-05 44.5 3.0 108 188-306 31-139 (214)
446 2ce2_X GTPase HRAS; signaling 74.8 1.2 4.2E-05 43.5 2.3 21 188-208 6-26 (166)
447 2zu0_C Probable ATP-dependent 74.7 1.2 4.2E-05 47.8 2.4 21 187-207 48-68 (267)
448 1zu4_A FTSY; GTPase, signal re 74.6 1.8 6.1E-05 47.9 3.7 22 186-207 106-127 (320)
449 1vpl_A ABC transporter, ATP-bi 74.4 1.2 4.1E-05 47.5 2.2 21 187-207 43-63 (256)
450 1mv5_A LMRA, multidrug resista 74.3 1.2 4.1E-05 47.2 2.1 21 187-207 30-50 (243)
451 3vr4_A V-type sodium ATPase ca 74.3 2.6 9E-05 49.3 5.1 44 188-235 235-279 (600)
452 1nlf_A Regulatory protein REPA 74.1 1.3 4.3E-05 48.3 2.4 21 187-207 32-52 (279)
453 2wjg_A FEOB, ferrous iron tran 74.0 1.4 4.7E-05 44.5 2.5 22 187-208 9-30 (188)
454 2eyu_A Twitching motility prot 74.0 1.7 5.9E-05 46.5 3.3 106 187-307 27-135 (261)
455 2ghi_A Transport protein; mult 74.0 1.2 4.3E-05 47.6 2.2 21 187-207 48-68 (260)
456 2qi9_C Vitamin B12 import ATP- 74.0 1.3 4.3E-05 47.1 2.2 21 187-207 28-48 (249)
457 2ixe_A Antigen peptide transpo 73.9 1.3 4.3E-05 47.9 2.2 21 187-207 47-67 (271)
458 1ltq_A Polynucleotide kinase; 73.7 1.3 4.3E-05 49.0 2.3 21 187-207 4-24 (301)
459 3con_A GTPase NRAS; structural 73.7 1.4 4.7E-05 44.6 2.4 22 187-208 23-44 (190)
460 3a8t_A Adenylate isopentenyltr 73.6 1.4 4.7E-05 48.6 2.4 21 187-207 42-62 (339)
461 1z2a_A RAS-related protein RAB 73.6 1.4 4.8E-05 43.3 2.4 22 187-208 7-28 (168)
462 2v9p_A Replication protein E1; 73.5 1.4 4.7E-05 48.1 2.4 21 187-207 128-148 (305)
463 2wsm_A Hydrogenase expression/ 73.4 1.3 4.5E-05 46.2 2.2 22 187-208 32-53 (221)
464 2ihy_A ABC transporter, ATP-bi 73.4 1.3 4.5E-05 47.9 2.2 21 187-207 49-69 (279)
465 2nq2_C Hypothetical ABC transp 73.2 1.3 4.6E-05 47.1 2.2 21 187-207 33-53 (253)
466 2yz2_A Putative ABC transporte 73.2 1.3 4.6E-05 47.6 2.2 21 187-207 35-55 (266)
467 2nzj_A GTP-binding protein REM 73.1 1.5 5.3E-05 43.4 2.6 22 187-208 6-27 (175)
468 3sop_A Neuronal-specific septi 73.0 1.4 4.9E-05 47.4 2.4 20 188-207 5-24 (270)
469 3gmt_A Adenylate kinase; ssgci 73.0 1.5 5E-05 45.5 2.3 20 188-207 11-30 (230)
470 2og2_A Putative signal recogni 72.7 1.4 4.9E-05 49.4 2.3 21 187-207 159-179 (359)
471 3exa_A TRNA delta(2)-isopenten 72.6 1.4 4.9E-05 47.7 2.2 21 187-207 5-25 (322)
472 2gj8_A MNME, tRNA modification 72.5 1.6 5.4E-05 43.4 2.4 22 187-208 6-27 (172)
473 3v9p_A DTMP kinase, thymidylat 72.2 2.8 9.4E-05 43.6 4.2 22 187-208 27-48 (227)
474 3end_A Light-independent proto 72.0 2.8 9.4E-05 46.4 4.5 39 186-226 42-80 (307)
475 1u8z_A RAS-related protein RAL 72.0 1.6 5.5E-05 42.8 2.4 22 187-208 6-27 (168)
476 3kjh_A CO dehydrogenase/acetyl 71.8 3 0.0001 44.5 4.6 40 188-229 3-42 (254)
477 2ged_A SR-beta, signal recogni 71.7 1.6 5.5E-05 44.2 2.4 22 187-208 50-71 (193)
478 3nh6_A ATP-binding cassette SU 71.7 1.4 4.8E-05 48.2 2.0 21 187-207 82-102 (306)
479 3q85_A GTP-binding protein REM 71.6 1.7 5.9E-05 42.8 2.5 20 188-207 5-24 (169)
480 2qmh_A HPR kinase/phosphorylas 71.6 1.6 5.3E-05 43.8 2.1 21 187-207 36-56 (205)
481 2erx_A GTP-binding protein DI- 71.5 1.7 5.9E-05 42.8 2.5 21 188-208 6-26 (172)
482 1m7b_A RND3/RHOE small GTP-bin 71.5 1.6 5.6E-05 43.8 2.3 22 187-208 9-30 (184)
483 3q72_A GTP-binding protein RAD 71.5 1.6 5.3E-05 42.9 2.1 21 188-208 5-25 (166)
484 3lv8_A DTMP kinase, thymidylat 71.3 3.8 0.00013 42.9 5.1 22 187-208 29-50 (236)
485 3hws_A ATP-dependent CLP prote 71.2 1.5 5.1E-05 49.9 2.2 21 187-207 53-73 (363)
486 1q3t_A Cytidylate kinase; nucl 71.2 1.7 5.7E-05 45.9 2.4 21 187-207 18-38 (236)
487 1z08_A RAS-related protein RAB 71.2 2 6.7E-05 42.4 2.8 22 187-208 8-29 (170)
488 3ihw_A Centg3; RAS, centaurin, 71.1 1.7 5.8E-05 43.7 2.3 22 187-208 22-43 (184)
489 1a7j_A Phosphoribulokinase; tr 71.1 0.85 2.9E-05 49.8 0.0 21 187-207 7-27 (290)
490 1c1y_A RAS-related protein RAP 70.9 1.8 6E-05 42.5 2.4 21 188-208 6-26 (167)
491 2lkc_A Translation initiation 70.9 2.1 7.3E-05 42.5 3.0 22 187-208 10-31 (178)
492 1um8_A ATP-dependent CLP prote 70.9 1.6 5.3E-05 50.1 2.2 21 187-207 74-94 (376)
493 1svm_A Large T antigen; AAA+ f 70.8 1.7 5.8E-05 49.2 2.4 21 187-207 171-191 (377)
494 3zvl_A Bifunctional polynucleo 70.7 1.8 6.1E-05 50.2 2.6 22 186-207 259-280 (416)
495 2pjz_A Hypothetical protein ST 70.7 1.7 5.6E-05 46.6 2.2 22 186-207 31-52 (263)
496 2yhs_A FTSY, cell division pro 70.7 1.7 5.7E-05 50.6 2.4 39 187-228 295-333 (503)
497 1cp2_A CP2, nitrogenase iron p 70.7 3.1 0.00011 44.9 4.5 36 187-224 3-38 (269)
498 3foz_A TRNA delta(2)-isopenten 70.7 1.7 5.7E-05 47.1 2.2 21 187-207 12-32 (316)
499 1ek0_A Protein (GTP-binding pr 70.6 1.8 6.2E-05 42.6 2.4 21 188-208 6-26 (170)
500 1z0j_A RAB-22, RAS-related pro 70.6 1.8 6.2E-05 42.6 2.4 22 187-208 8-29 (170)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.8e-47 Score=489.10 Aligned_cols=271 Identities=11% Similarity=0.006 Sum_probs=178.1
Q ss_pred cCCceeecccCcccccccCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEe
Q 042296 1161 SLEHLEVGICSKLKFLSCSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIW 1240 (1446)
Q Consensus 1161 ~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 1240 (1446)
+|+.|++++|.....+|.....+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..++++++|++|+++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 34444444443333444444456778888888888777888888888888888888888888888888888888888888
Q ss_pred ccCCCcccCCCCCCcccccceecccccCcccc----------------------ccc---CCccceEeeCCCCCcccccc
Q 042296 1241 SCGNLVSFPEGGLPSANLTKLQITWCDKLEAL----------------------PEG---MNSLRELNIGGLASMVCFPV 1295 (1446)
Q Consensus 1241 ~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~l----------------------p~~---l~~L~~L~l~~c~~l~~~~~ 1295 (1446)
+|+..+.+|..++....+..+.+.....+..+ +.. +..+..+++..+..-+.+|.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 88777788877776655555544432211111 111 11122222222111122222
Q ss_pred cCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcceeeecCcCCccccCcccccCCCcccccceecccccCCccC
Q 042296 1296 EADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLHDVVSFSPQELGTTLPASLTHLWIYDFQNLECL 1375 (1446)
Q Consensus 1296 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l 1375 (1446)
. +...++|+.|++++|...+.++. .+.++++|+.|++++|.-...+|..- .-.++|++|++++|+..+.+
T Consensus 627 ~---~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 627 T---FDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIPDEV---GDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp S---CSSSBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGG---GGCTTCCEEECCSSCCEECC
T ss_pred h---hhccccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCChHH---hCCCCCCEEECCCCcccCcC
Confidence 2 22456899999999997666554 38899999999999987666776532 22468999999999888899
Q ss_pred ccCCCCCCCcceeecccCCCccccCCCCCCCccceEeccCCchhH----HhhccCCCCccccccccCeee
Q 042296 1376 SSVGQNLTSLVYLWLYACPKLKYFSDKGLPTSLLQLYIKDCPLIE----EKCRKDQGQYWHLLTHIPDVR 1441 (1446)
Q Consensus 1376 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~L~----~~~~~~~g~~~~~~~~~~~~~ 1441 (1446)
|..+.++++|++|++++|+--..+|..+...++....+.++|.|. ..|..+.+++|++|+|+|.+.
T Consensus 697 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred ChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 999999999999999998877889988777777777777766432 279999999999999999864
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.5e-43 Score=432.40 Aligned_cols=296 Identities=17% Similarity=0.232 Sum_probs=240.5
Q ss_pred cccceeEccCCchHHHHHHHHHc--ccchhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCC------CCCCCHHHH
Q 042296 185 VNEAKVYGMGGLGKTTLAQLVYN--DARLQDHFDLKAWTCVSEDF--DITRITKSILNSIGTDQN------VDSLDFDKL 254 (1446)
Q Consensus 185 ~~~~~i~G~gG~GKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~------~~~~~~~~~ 254 (1446)
+++++|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++++|+.+++.... .+..+.+.+
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence 35779999999999999999998 67899999999999999985 899999999999986521 123356778
Q ss_pred HHHHHHHcCCc-eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhCCC-CceecCCCChHhHHHHHH
Q 042296 255 QVELKKQLSQK-KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMGTV-PAYPLKELSDEDCLNVFT 332 (1446)
Q Consensus 255 ~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~-~~~~l~~L~~~~~~~lf~ 332 (1446)
+..+++.++++ ||||||||||+.+...|.. .+||+||||||++.++..+++. .+|+|++|+.++||+||.
T Consensus 232 ~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 303 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLE 303 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHH
Confidence 89999999996 9999999999863223432 1799999999999999887633 579999999999999999
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccCCCCcccccchhhhhhhccCCH
Q 042296 333 QHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWDLPEERCDILPALKVSYYYLSP 412 (1446)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~ 412 (1446)
++||+.. .++++++++++|+++|+|+||||+++|+.|+.+ . -.|...+....+.. ....+.+++.+||++||+
T Consensus 304 ~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~ 376 (549)
T 2a5y_B 304 AYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESR--GLVGVECITPYSYKSLAM 376 (549)
T ss_dssp HTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHH--CSSTTCCCSSSSSSSHHH
T ss_pred HHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhcc--cHHHHHHHHhcccccccH
Confidence 9997653 246788999999999999999999999999876 2 23334444333322 235799999999999999
Q ss_pred HHHHHHh-----------hhccCCCCceeChHHHHHHHHhC--CCCCCCCCCCCHHHHHHHHHHHHHhcCccccccC-CC
Q 042296 413 RLKQCFT-----------YCSLLPKDYEFKEEEIILLWIAV--GFLDQEDNGRESEDLGHMFFKELHSRSLFQKSSN-DT 478 (1446)
Q Consensus 413 ~~k~cf~-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~-~~ 478 (1446)
++|.||+ |||+||+++.|+ +++|+|+ ||+.....+...+++++ ||++|+++||++.... ..
T Consensus 377 ~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~ 451 (549)
T 2a5y_B 377 ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPV 451 (549)
T ss_dssp HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSS
T ss_pred HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCc
Confidence 9999999 999999999999 8999999 99976544567788888 9999999999998643 44
Q ss_pred CceEehhhHHHHHHHhhccceE
Q 042296 479 LRFVMHDLVNDLAQWAAGNIYL 500 (1446)
Q Consensus 479 ~~~~mH~lv~~~~~~~~~~~~~ 500 (1446)
.+|+|||+||+||+.++.+++.
T Consensus 452 ~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 452 LTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CEEECCHHHHHHHHTTSCTHHH
T ss_pred eEEEeChHHHHHHHHHHHHHHH
Confidence 5799999999999999887654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-41 Score=438.51 Aligned_cols=621 Identities=17% Similarity=0.102 Sum_probs=328.7
Q ss_pred HHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCcccc-ccCc--ccccccccceeeccCccccccccccc-c
Q 042296 563 ILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIE-ILPD--SINKLYNLHTLLLEDCDRLKKLCADM-G 638 (1446)
Q Consensus 563 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i-~ 638 (1446)
+++.+.++++|++++++.+.+..+|..|+++++|++|+|++|.+. .+|. .++++++|++|++++|.....+|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 677788999999999999998888899999999999999999987 5777 89999999999999987666777765 8
Q ss_pred CcccceeecccCCCcccccCCc---ccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhc
Q 042296 639 NLIKLHHLNNSTTNSLEEMPRG---IGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQL 715 (1446)
Q Consensus 639 ~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 715 (1446)
++++|++|++++|......|.. ++++++|++|....... .. . ..+
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l------------------------~~------~--~~~ 196 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI------------------------SG------D--VDV 196 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE------------------------ES------C--CBC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc------------------------cc------c--CCc
Confidence 9999999999999843444444 67888888873211100 00 0 012
Q ss_pred cCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCC-CCCcccCcCccCCceEEEeeCCCCCCC
Q 042296 716 DKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGT-KFPIWLGDSYFSNLVTLKFQNCHKCTS 794 (1446)
Q Consensus 716 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~ 794 (1446)
..+++|+.|++++|..... ...+..+++|+.|++++|... .+|.++.. +++|+.|++++|...+.
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~------------~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~ 262 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTG------------IPFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGP 262 (768)
T ss_dssp TTCTTCCEEECCSSCCCSC------------CCBCTTCCSCCEEECCSSCCCSCHHHHTTT--CSSCCEEECCSSCCEES
T ss_pred ccCCcCCEEECcCCcCCCC------------CcccccCCCCCEEECcCCcCCCcccHHHhc--CCCCCEEECCCCcccCc
Confidence 4456666666666543311 122556666777777766654 34555543 66677777777766555
Q ss_pred CCCCCCcCccceeecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCC
Q 042296 795 LPSIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKL 874 (1446)
Q Consensus 795 l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 874 (1446)
+|.. .+++|++|++++|.....++..+.+ .+++|+.|++.++ .+.+..+..+.. +++|+.|++++| .+
T Consensus 263 ~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n-~l~~~~p~~~~~----l~~L~~L~L~~n-~l 330 (768)
T 3rgz_A 263 IPPL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGN-HFYGAVPPFFGS----CSLLESLALSSN-NF 330 (768)
T ss_dssp CCCC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSS-EEEECCCGGGGG----CTTCCEEECCSS-EE
T ss_pred cCcc-ccCCCCEEECcCCccCCccCHHHHh-----hcCcCCEEECcCC-cCCCccchHHhc----CCCccEEECCCC-cc
Confidence 5544 6667777777666544444433322 1466666666653 233333333332 666666666666 44
Q ss_pred cCCCC----CCCCCccEEEEeccC---ChhhcCCCCC-cccEEEEecccCeeeeCCCCCCceeeecccccccccccccch
Q 042296 875 QGTFP----ERLPSLEILVIQSCE---ELLVSIRRLP-ALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPL 946 (1446)
Q Consensus 875 ~~~~p----~~l~~L~~L~l~~~~---~l~~~l~~l~-~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~ 946 (1446)
.+.+| ..+++|+.|++++|. .++..+..++ +|+.|++++|.... ..+..+..
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~-~~~~~~~~------------------- 390 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG-PILPNLCQ------------------- 390 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE-ECCTTTTC-------------------
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC-CcChhhhh-------------------
Confidence 44555 245666666666664 2344444444 66666666654221 11111110
Q ss_pred hccCCCcceeeecccccchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCc
Q 042296 947 KLQLPKLEELEIANIDELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQ 1026 (1446)
Q Consensus 947 ~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~ 1026 (1446)
..+++|+.|.+.++.-...++ ..+..+++|+.|+++++.-...+ +..+..+++|+.|++++|...+.+|.
T Consensus 391 -~~~~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 391 -NPKNTLQELYLQNNGFTGKIP----PTLSNCSELVSLHLSFNYLSGTI-----PSSLGSLSKLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp -STTCCCCEEECCSSEEEEECC----GGGGGCTTCCEEECCSSEEESCC-----CGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred -cccCCccEEECCCCccccccC----HHHhcCCCCCEEECcCCcccCcc-----cHHHhcCCCCCEEECCCCcccCcCCH
Confidence 013455555555543221111 12344555555555554211111 22344556666666666654445554
Q ss_pred cccccCCcccEEEeccCCCCcccCC-CCCCCCccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCCccccC-CCCC
Q 042296 1027 TSLSLINSLKEIGIYNCSSLVCFPE-AALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYITS-VQLP 1104 (1446)
Q Consensus 1027 ~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~ 1104 (1446)
.+..+++|+.|++++|.....+|. ...+++|+.|++++|...+.+|..+... ++|++|++++|...+.+|. ....
T Consensus 461 -~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 461 -ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp -GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCCEEECCGGGGGC
T ss_pred -HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC--CCCCEEECCCCcccCcCCHHHcCC
Confidence 556666666666666544334443 2235566666666666555566554443 3366666666655544432 2333
Q ss_pred CCccEEEEecCCCCcccccccccccCC--CCCCCcccEEEeccCCchh------hcccCCC-CC------CcCCceeecc
Q 042296 1105 ASLKHVEIEDCSNLRTLREEGEIHNGS--RRDTSLLEHLRIVNCQSLI------TLFSKNE-LP------DSLEHLEVGI 1169 (1446)
Q Consensus 1105 ~sL~~L~l~~c~~L~~l~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~------~~~~~~~-~~------~~L~~L~l~~ 1169 (1446)
++|+.|+++++.-...+|..-...... ..-....+...+.+..... ......+ .+ +.+..+++..
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 455555555543222222110000000 0000001111111110000 0000000 00 0000000000
Q ss_pred cCcccccccCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccC
Q 042296 1170 CSKLKFLSCSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFP 1249 (1446)
Q Consensus 1170 c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp 1249 (1446)
...-...+.....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..++++++|++|++++|...+.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 00001112223334555555555555555555555555556666666555555555555555556666665555444555
Q ss_pred CCCCCcccccceecccccCcccccc
Q 042296 1250 EGGLPSANLTKLQITWCDKLEALPE 1274 (1446)
Q Consensus 1250 ~~~~~~~~L~~L~l~~c~~l~~lp~ 1274 (1446)
..+..+++|++|++++|+..+.+|.
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCS
T ss_pred hHHhCCCCCCEEECcCCcccccCCC
Confidence 5555555555555555555555554
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2e-35 Score=360.97 Aligned_cols=265 Identities=19% Similarity=0.283 Sum_probs=213.0
Q ss_pred cccceeEccCCchHHHHHHHHHcccchhccCCc-eEEEEeCCCCCHHHHHHHHHHHhcCCC---CC--C-----CCCHHH
Q 042296 185 VNEAKVYGMGGLGKTTLAQLVYNDARLQDHFDL-KAWTCVSEDFDITRITKSILNSIGTDQ---NV--D-----SLDFDK 253 (1446)
Q Consensus 185 ~~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~~---~~--~-----~~~~~~ 253 (1446)
+++++|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+..++... .. . ..+.+.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~lee 229 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHH
Confidence 357799999999999999999988788999986 999999999998888888877543210 10 0 123455
Q ss_pred HHHHHHHHc---CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhCCCCceecC------CCCh
Q 042296 254 LQVELKKQL---SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMGTVPAYPLK------ELSD 324 (1446)
Q Consensus 254 ~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~------~L~~ 324 (1446)
+...+++.+ +++|+||||||||+. ..|+.+ + +||+||||||++.++..+.....+.++ +|+.
T Consensus 230 L~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~ 300 (1221)
T 1vt4_I 230 IQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300 (1221)
T ss_dssp HHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCH
Confidence 667777765 789999999999985 667653 2 699999999999998755544567777 9999
Q ss_pred HhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCC-ChhHHHHHHhccccCCCCcccccchhh
Q 042296 325 EDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKT-DQRDWEDVLNCKIWDLPEERCDILPAL 403 (1446)
Q Consensus 325 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~-~~~~w~~~l~~~~~~~~~~~~~~~~~l 403 (1446)
+|||+||.+.. +.. . .++..+| |+|+||||+++|+.|+.+. ..+.|... ....+..+|
T Consensus 301 eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaL 359 (1221)
T 1vt4_I 301 DEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTII 359 (1221)
T ss_dssp HHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHH
T ss_pred HHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHH
Confidence 99999999884 322 1 2233333 9999999999999999875 46778753 135789999
Q ss_pred hhhhccCCHHH-HHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCccccccCCCCceE
Q 042296 404 KVSYYYLSPRL-KQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSSNDTLRFV 482 (1446)
Q Consensus 404 ~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~ 482 (1446)
.+||+.||++. |+||+|||+||+++.|+.+.++.+|+++| ++.+..+|++|+++|||+.. +...+|+
T Consensus 360 elSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~~rYr 427 (1221)
T 1vt4_I 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKESTIS 427 (1221)
T ss_dssp HHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSSSEEB
T ss_pred HHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-CCCCEEE
Confidence 99999999999 99999999999999999999999998886 13588899999999999985 2345899
Q ss_pred ehhhHHHHH
Q 042296 483 MHDLVNDLA 491 (1446)
Q Consensus 483 mH~lv~~~~ 491 (1446)
|||++++++
T Consensus 428 MHDLllELr 436 (1221)
T 1vt4_I 428 IPSIYLELK 436 (1221)
T ss_dssp CCCHHHHHH
T ss_pred ehHHHHHHh
Confidence 999999865
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-33 Score=362.43 Aligned_cols=581 Identities=17% Similarity=0.099 Sum_probs=296.0
Q ss_pred EEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccccccccCcccceeecccCCCc
Q 042296 575 VFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNS 653 (1446)
Q Consensus 575 ~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 653 (1446)
++|+++++++.+|..+. .+|++|+|++|.++.+|. .|+++++|++|++++|......|..|+++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~- 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE- 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-
Confidence 44555555555554443 455555555555554443 35555555555555543222224445555555555555554
Q ss_pred ccccCC-cccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCC
Q 042296 654 LEEMPR-GIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNT 732 (1446)
Q Consensus 654 ~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 732 (1446)
+..+|. .++++++|++|..... ......+..+.++++|+.|+++.|...
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n------------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSN------------------------------SIQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS------------------------------CCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred cCccChhhhccCCCCCEEECCCC------------------------------ccCccChhHccccCCCCEEECCCCccc
Confidence 444443 2445555544411100 000011112334444555555443222
Q ss_pred CCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcc-cCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeecc
Q 042296 733 DTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIW-LGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEVC 810 (1446)
Q Consensus 733 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 810 (1446)
.. .+..+..+++|+.|++++|....++.. +....+++|+.|++++|...+..| .+..+++|+.|++.
T Consensus 135 ~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 135 ST-----------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp CC-----------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred cc-----------CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 11 122344556666666666665554432 111114667777777776555444 45666667777665
Q ss_pred cccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCCCC-----CCc
Q 042296 811 RMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPERL-----PSL 885 (1446)
Q Consensus 811 ~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l-----~~L 885 (1446)
++.........+... .. .++|+.|++++| .+.+..|..+ ++|
T Consensus 204 ~~~l~~~~~~~~~~~---l~-----------------------------~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLE---LA-----------------------------NTSIRNLSLSNS-QLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp TCCCHHHHHHHHHHH---HT-----------------------------TSCCCEEECTTS-CCCEECTTTTGGGGGSCC
T ss_pred ccccChhhHHHHHHH---hh-----------------------------hccccEEEccCC-cccccChhHhhccCcCCC
Confidence 543211000000000 00 234455555444 3332333222 224
Q ss_pred cEEEEeccCC---hhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCCCcceeeecccc
Q 042296 886 EILVIQSCEE---LLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEELEIANID 962 (1446)
Q Consensus 886 ~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~ 962 (1446)
+.|++++|.. .+..+..+++|+.|++++|.... ..+ ..+..+++|+.|++.++.
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~----------------------~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFS----------------------HSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE-ECT----------------------TTTTTCTTCCEEECTTCB
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCc-cCh----------------------hhhcCCCCccEEeccchh
Confidence 4444444431 12345566667777766654221 111 112235556666655421
Q ss_pred cchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccccCCcccEEEecc
Q 042296 963 ELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYN 1042 (1446)
Q Consensus 963 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~ 1042 (1446)
.-..+ ....++.+.. ..+..+++|++|++++|. +..++...+..+++|++|++++
T Consensus 308 ~~~~~------~~~~lp~i~~------------------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 308 TKQSI------SLASLPKIDD------------------FSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CCC------------CCEECT------------------TTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTT
T ss_pred hhccc------ccccccccCh------------------hhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCC
Confidence 11000 0011111111 124456788888888884 4555555788888888888888
Q ss_pred CCC-CcccCCCCC----CCCccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCCccccC--CCCCCCccEEEEecC
Q 042296 1043 CSS-LVCFPEAAL----PSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYITS--VQLPASLKHVEIEDC 1115 (1446)
Q Consensus 1043 c~~-l~~l~~~~~----~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~sL~~L~l~~c 1115 (1446)
|.. +..++...+ .++|+.|++++|...+..|..+... ++|+.|++++|.....++. ....++|+.|+++++
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL--GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC--CCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 642 334443332 2578888888888666666555443 4588888888876544432 233455666666655
Q ss_pred CCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCCcCCceeecccCcccccccCCCCccccceeeeccCC
Q 042296 1116 SNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHLEVGICSKLKFLSCSGNLPQALKFICVFRCS 1195 (1446)
Q Consensus 1116 ~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~l~~~~ 1195 (1446)
. +..+. ...+..+++|+.|++.++.-- .+..+|.....+++|+.|++++|.
T Consensus 441 ~-l~~~~------~~~~~~~~~L~~L~l~~n~l~----------------------~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 441 K-YLQLT------RNSFALVPSLQRLMLRRVALK----------------------NVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp S-EEECC------TTTTTTCTTCCEEECTTSCCB----------------------CTTCSSCTTTTCTTCCEEECCSSC
T ss_pred C-cceeC------hhhhhcCcccccchhcccccc----------------------ccccCCcccccCCCCCEEECCCCC
Confidence 3 22111 112334455666655554311 112333334455667777777766
Q ss_pred CchhhhhhhcCCCCccEEEeccccCcccc----C----ccCCCCCcccEEEEeccCCCcccCCC-CCCcccccceecccc
Q 042296 1196 KLESIAERLDNNTSLEVFKIGCCDNLKIL----P----GGLHKLRHLQEVGIWSCGNLVSFPEG-GLPSANLTKLQITWC 1266 (1446)
Q Consensus 1196 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~l----p----~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c 1266 (1446)
.....+..+.++++|+.|++++|...... | ..+..+++|++|++++| .++.+|.. +..+++|+.|++++|
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC
Confidence 55444555677777777777777554321 1 12567777888888777 56667654 455677788887654
Q ss_pred cCcccccc----cCCccceEeeCCCCCcccccccCcCCC-CCCCcceEEEccCCC
Q 042296 1267 DKLEALPE----GMNSLRELNIGGLASMVCFPVEADGAM-FPSNLQSLDIHDTKI 1316 (1446)
Q Consensus 1267 ~~l~~lp~----~l~~L~~L~l~~c~~l~~~~~~~~~~~-~~~~L~~L~l~~~~~ 1316 (1446)
.++.+|. .+++|+.|++++| .+..++... +. ..++|+.|++++|+.
T Consensus 571 -~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 571 -NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKV--FGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHH--HHHHHTTCSEEECTTCCC
T ss_pred -CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhH--hcccccccCEEEccCCCc
Confidence 4555554 3467788888775 444444321 00 135788888888875
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-32 Score=342.49 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=63.3
Q ss_pred EEEeCCCCccccCccccCCCCCceeeccCcccccc-CcccccccccceeeccCccccccccccccCcccceeecccCCCc
Q 042296 575 VFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNS 653 (1446)
Q Consensus 575 ~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 653 (1446)
.+++++..++.+|..+. .++++|+|++|.|+.+ |..|+++++|++|++++|......|..|+++++|++|++++|..
T Consensus 16 ~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 56677777777777665 3677888888777766 55777778888888877754344466677777888888777763
Q ss_pred ccccCCccccccccccc
Q 042296 654 LEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 654 ~~~~p~~i~~L~~L~~L 670 (1446)
....|..++++++|++|
T Consensus 94 ~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 94 IFMAETALSGPKALKHL 110 (606)
T ss_dssp SEECTTTTSSCTTCCEE
T ss_pred cccChhhhcccccccEe
Confidence 23334455555555555
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-32 Score=347.77 Aligned_cols=147 Identities=19% Similarity=0.190 Sum_probs=97.2
Q ss_pred CceeeccCccccccCcccccccccceeeccCcccccccc-ccccCcccceeecccCCCccccc-CCcccccccccccCce
Q 042296 596 LRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHHLNNSTTNSLEEM-PRGIGKLTFLQTLCNF 673 (1446)
Q Consensus 596 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~ 673 (1446)
-+.++.++++++.+|..+. .+|++|++++|. +..+| ..|.++++|++|++++|. +..+ |..++++++|++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L--- 78 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVL--- 78 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC--TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEE---
T ss_pred CCeeECCCCCccccccccC--CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEE---
Confidence 3678999999999998775 799999999985 66665 469999999999999997 4444 4446666666655
Q ss_pred EecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCC
Q 042296 674 AVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPH 753 (1446)
Q Consensus 674 ~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~ 753 (1446)
++++|..... ....+..+
T Consensus 79 ---------------------------------------------------~L~~n~l~~l-----------~~~~~~~l 96 (680)
T 1ziw_A 79 ---------------------------------------------------NLQHNELSQL-----------SDKTFAFC 96 (680)
T ss_dssp ---------------------------------------------------ECCSSCCCCC-----------CTTTTTTC
T ss_pred ---------------------------------------------------ECCCCccCcc-----------ChhhhccC
Confidence 2222211110 01124455
Q ss_pred CCcceEEEeccCCCCCC-cccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeeccccc
Q 042296 754 QNLEQFFISGYGGTKFP-IWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEVCRMN 813 (1446)
Q Consensus 754 ~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 813 (1446)
++|+.|++++|....+| ..+.. +++|+.|++++|...+..| .++.+++|++|++++|.
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVK--QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTT--CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred CCCCEEECCCCccCccChhHccc--cCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 66666666666655554 33433 6777777777777655544 46677777777776653
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.7e-32 Score=343.53 Aligned_cols=270 Identities=13% Similarity=0.050 Sum_probs=165.5
Q ss_pred cCccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCCC
Q 042296 1004 LGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTS 1083 (1446)
Q Consensus 1004 ~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~ 1083 (1446)
+..+++|+.|++++| .+..+| .+..+++|++|++++|.. +.+|.. .+++|+.|++++|.....++ ...+++
T Consensus 281 ~~~l~~L~~L~l~~~-~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~ 351 (606)
T 3vq2_A 281 FHCLANVSAMSLAGV-SIKYLE--DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK----KVALPS 351 (606)
T ss_dssp CGGGTTCSEEEEESC-CCCCCC--CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC----CCCCTT
T ss_pred cccCCCCCEEEecCc-cchhhh--hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh----hccCCC
Confidence 344566666666666 345555 455666666666666543 555544 55666666666665444332 113344
Q ss_pred ccEEEEEecCCCccc--c-CCCCCCCccEEEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCC
Q 042296 1084 LETLKVYGCNLLTYI--T-SVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPD 1160 (1446)
Q Consensus 1084 L~~L~l~~~~~l~~~--~-~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 1160 (1446)
|++|++++|...... + ....+++|+.|++.++. ++ .+.......+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~-------------------------------~~~~~~~~l~ 399 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AI-------------------------------IMSANFMGLE 399 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EE-------------------------------EECCCCTTCT
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cc-------------------------------cchhhccCCC
Confidence 666666665432210 0 11222344444444432 11 1222222334
Q ss_pred cCCceeecccCcccccc-cCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCcc-ccCccCCCCCcccEEE
Q 042296 1161 SLEHLEVGICSKLKFLS-CSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLK-ILPGGLHKLRHLQEVG 1238 (1446)
Q Consensus 1161 ~L~~L~l~~c~~L~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~ 1238 (1446)
+|+.|+++++......+ .....+++|+.|++++|......|..+.++++|+.|++++|...+ .+|..++.+++|++|+
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 45555555544333333 234456778888888888777777888888888888888887766 3677888888888888
Q ss_pred EeccCCCcccCCCCCCcccccceecccccCcccccc---cCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCC
Q 042296 1239 IWSCGNLVSFPEGGLPSANLTKLQITWCDKLEALPE---GMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTK 1315 (1446)
Q Consensus 1239 l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~lp~---~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 1315 (1446)
+++|...+..|..+..+++|++|++++|......|. .+++|+.|++++|. +..+|.... .++++|+.|++++|+
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~--~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQ--HFPKSLAFFNLTNNS 556 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGG--GSCTTCCEEECCSCC
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHh--hhcccCcEEEccCCC
Confidence 888854444566677788888888888765555454 45678888888864 667776532 245679999999988
Q ss_pred Cc
Q 042296 1316 IW 1317 (1446)
Q Consensus 1316 ~~ 1317 (1446)
..
T Consensus 557 ~~ 558 (606)
T 3vq2_A 557 VA 558 (606)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.5e-32 Score=342.96 Aligned_cols=196 Identities=18% Similarity=0.112 Sum_probs=113.6
Q ss_pred ceeEEEEeCCCCccccC-ccccCCCCCceeeccCcccccc-CcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 571 HRLKVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
+.|++|+|++|.++.+| ..|.++++|++|+|++|.++.+ |..|+++++|++|++++|......|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56777777777777664 4677777777777777777766 456777777777777777433333667777777777777
Q ss_pred cCCCcccccC-CcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcch-hhhhhccCCCCCceEEE
Q 042296 649 STTNSLEEMP-RGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGD-AKEAQLDKKKNLKVLLL 726 (1446)
Q Consensus 649 ~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~l 726 (1446)
++|. +..+| ..++++++|++|..... .... ..+..+.++++|+.|++
T Consensus 112 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n------------------------------~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 112 VETK-LASLESFPIGQLITLKKLNVAHN------------------------------FIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp TTSC-CCCSSSSCCTTCTTCCEEECCSS------------------------------CCCCCCCCGGGGTCTTCCEEEC
T ss_pred cCCc-cccccccccCCCCCCCEEeCCCC------------------------------cccceechHhHhhcCCCCEEEc
Confidence 7776 55554 55777777776622111 0000 12334555666666666
Q ss_pred EeeeCCCCCCCCCchhHHHHhccCCCCCC----cceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCC-CCC-CCCC
Q 042296 727 QWTCNTDTDGSRDLGTETRVLDMLRPHQN----LEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCT-SLP-SIGK 800 (1446)
Q Consensus 727 ~~n~~~~~~~~~~~~~~~~~~~~l~~~~~----L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~ 800 (1446)
++|...... ...+..+.+ +..|++++|....+|..... ..+|+.|++++|...+ ..| .++.
T Consensus 161 s~n~l~~~~-----------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~ 227 (606)
T 3vq2_A 161 SYNYIQTIT-----------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQN 227 (606)
T ss_dssp CSSCCCEEC-----------TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHT
T ss_pred cCCcceecC-----------hhhhhhhhccccccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhcc
Confidence 655333211 011111122 34667777766666555443 3367777777765432 122 3455
Q ss_pred cCccceeecc
Q 042296 801 LLSLKHLEVC 810 (1446)
Q Consensus 801 l~~L~~L~L~ 810 (1446)
++.|+.+.+.
T Consensus 228 l~~L~~l~l~ 237 (606)
T 3vq2_A 228 LAGLHVHRLI 237 (606)
T ss_dssp TTTCEEEEEE
T ss_pred cccccccccc
Confidence 5555555553
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=1.5e-31 Score=339.63 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=84.4
Q ss_pred eeEEEEeCCCCcccc-CccccCCCCCceeeccCcccccc-CcccccccccceeeccCccccccccccccCcccceeeccc
Q 042296 572 RLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNS 649 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 649 (1446)
.+++|+|++|.++.+ |..|+++++|++|+|++|.+..+ |..|+++++|++|++++|......|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 679999999999988 77899999999999999999866 7789999999999999986555557889999999999999
Q ss_pred CCCccccc-CCccccccccccc
Q 042296 650 TTNSLEEM-PRGIGKLTFLQTL 670 (1446)
Q Consensus 650 ~~~~~~~~-p~~i~~L~~L~~L 670 (1446)
+|. +..+ |..++++++|++|
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEE
T ss_pred ccC-cccCCcchhccCCcccEE
Confidence 998 6665 4567777777766
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=3.4e-32 Score=377.81 Aligned_cols=287 Identities=22% Similarity=0.344 Sum_probs=229.2
Q ss_pred ccccceeEccCCchHHHHHHHHHcccch-hccC-CceEEEEeCCCCC--HHHHHHHHHHHhcCCCC---CCCCCHHHHHH
Q 042296 184 LVNEAKVYGMGGLGKTTLAQLVYNDARL-QDHF-DLKAWTCVSEDFD--ITRITKSILNSIGTDQN---VDSLDFDKLQV 256 (1446)
Q Consensus 184 ~~~~~~i~G~gG~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~~~~~ 256 (1446)
.++.++|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+..++..+..... ....+.+++..
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 225 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKD 225 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHH
Confidence 3457899999999999999999997543 4555 6788999998543 45557777777765432 23467888999
Q ss_pred HHHHHcCCc--eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHh-hCCCCceecCC-CChHhHHHHHH
Q 042296 257 ELKKQLSQK--KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAI-MGTVPAYPLKE-LSDEDCLNVFT 332 (1446)
Q Consensus 257 ~l~~~l~~~--~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~ 332 (1446)
.++..+.++ ||||||||||+. .+|..+ .+||+||||||++.++.. ++....+.+.. |+.+||++||.
T Consensus 226 ~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~ 296 (1249)
T 3sfz_A 226 RLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS 296 (1249)
T ss_dssp HHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHH
Confidence 999999877 999999999976 455442 479999999999998854 45667899996 99999999999
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccCC----C----Ccccccchhhh
Q 042296 333 QHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWDL----P----EERCDILPALK 404 (1446)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~~----~----~~~~~~~~~l~ 404 (1446)
..++.. .+++.+++++|+++|+|+||||+++|++|+.++ ..|...++...... . .....+.++|.
T Consensus 297 ~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 369 (1249)
T 3sfz_A 297 LFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMS 369 (1249)
T ss_dssp HHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHH
T ss_pred HhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHH
Confidence 988432 233456789999999999999999999999875 45776665322111 1 11246889999
Q ss_pred hhhccCCHHHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCccccccC-CCCceEe
Q 042296 405 VSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSSN-DTLRFVM 483 (1446)
Q Consensus 405 ~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~-~~~~~~m 483 (1446)
+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++|||+...+ ...+|+|
T Consensus 370 ~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~ 437 (1249)
T 3sfz_A 370 ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYL 437 (1249)
T ss_dssp HHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEEC
T ss_pred HHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEe
Confidence 99999999999999999999999999999999999554 4678899999999999997543 3346999
Q ss_pred hhhHHHHHHHhhccc
Q 042296 484 HDLVNDLAQWAAGNI 498 (1446)
Q Consensus 484 H~lv~~~~~~~~~~~ 498 (1446)
||+||+||+..+.++
T Consensus 438 h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 438 HDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHhhhhHH
Confidence 999999999987765
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=4.1e-30 Score=336.57 Aligned_cols=79 Identities=11% Similarity=0.195 Sum_probs=45.2
Q ss_pred CccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCCCc
Q 042296 1005 GLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTSL 1084 (1446)
Q Consensus 1005 ~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L 1084 (1446)
..+++|+.|++++| .+..++...+..+++|+.|++++| .++.++ .+++|+.|++++|.. ..+|.. ..++
T Consensus 335 ~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~---~~~~L~~L~l~~N~l-~~l~~~-----~~~l 403 (844)
T 3j0a_A 335 YGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH---FIPSIPDIFLSGNKL-VTLPKI-----NLTA 403 (844)
T ss_dssp SSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCS---SCCSCSEEEEESCCC-CCCCCC-----CTTC
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCccc---CCCCcchhccCCCCc-cccccc-----cccc
Confidence 34456666666666 445555545666677777777664 344443 256667777776663 344432 2346
Q ss_pred cEEEEEecCC
Q 042296 1085 ETLKVYGCNL 1094 (1446)
Q Consensus 1085 ~~L~l~~~~~ 1094 (1446)
+.|++++|..
T Consensus 404 ~~L~ls~N~l 413 (844)
T 3j0a_A 404 NLIHLSENRL 413 (844)
T ss_dssp CEEECCSCCC
T ss_pred ceeecccCcc
Confidence 6677666643
No 13
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=324.05 Aligned_cols=282 Identities=24% Similarity=0.368 Sum_probs=215.8
Q ss_pred cccceeEccCCchHHHHHHHHHcccch-hccC-CceEEEEeCCCCCHHHHHHH---HHHHhcCCC---CCCCCCHHHHHH
Q 042296 185 VNEAKVYGMGGLGKTTLAQLVYNDARL-QDHF-DLKAWTCVSEDFDITRITKS---ILNSIGTDQ---NVDSLDFDKLQV 256 (1446)
Q Consensus 185 ~~~~~i~G~gG~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~---i~~~l~~~~---~~~~~~~~~~~~ 256 (1446)
.+.+.|+||||+||||||+++|++.++ +.+| +.++|++++.. +...+... ++..++... .....+.+....
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKD 225 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHH
Confidence 457789999999999999999997666 7889 58999999876 33334333 344554211 123456778888
Q ss_pred HHHHHcCC--ceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhhCCCCceec---CCCChHhHHHHH
Q 042296 257 ELKKQLSQ--KKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMGTVPAYPL---KELSDEDCLNVF 331 (1446)
Q Consensus 257 ~l~~~l~~--~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l---~~L~~~~~~~lf 331 (1446)
.++..+.+ +++||||||||+. ..+. .+ .+|++||||||++.++..+. ...+++ ++|+.+||++||
T Consensus 226 ~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~ 295 (591)
T 1z6t_A 226 RLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEIL 295 (591)
T ss_dssp HHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHH
T ss_pred HHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHH
Confidence 88888865 7999999999875 3333 22 46899999999998776543 334554 589999999999
Q ss_pred HhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHHHhccccCC--------CCcccccchhh
Q 042296 332 TQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDVLNCKIWDL--------PEERCDILPAL 403 (1446)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~l~~~~~~~--------~~~~~~~~~~l 403 (1446)
...++.. .....+.+.+|+++|+|+|+||+++|+.++.++ ..|...++...... ......+..++
T Consensus 296 ~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l 368 (591)
T 1z6t_A 296 SLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAM 368 (591)
T ss_dssp HHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHH
T ss_pred HHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHH
Confidence 9988542 122345788999999999999999999998874 46877665422111 11224688899
Q ss_pred hhhhccCCHHHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCcccccc-CCCCceE
Q 042296 404 KVSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKSS-NDTLRFV 482 (1446)
Q Consensus 404 ~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~~~~~~~ 482 (1446)
..||+.||++.|.||++||+||+++.|+.+.++..|.++ .+.+..++++|+++|||+... +....|+
T Consensus 369 ~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~ 436 (591)
T 1z6t_A 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYY 436 (591)
T ss_dssp HHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEE
T ss_pred HHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEE
Confidence 999999999999999999999999999999999999442 245788999999999998643 3345799
Q ss_pred ehhhHHHHHHHhhc
Q 042296 483 MHDLVNDLAQWAAG 496 (1446)
Q Consensus 483 mH~lv~~~~~~~~~ 496 (1446)
||++||++++....
T Consensus 437 ~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 437 LHDLQVDFLTEKNC 450 (591)
T ss_dssp CCHHHHHHHHHHTG
T ss_pred EcHHHHHHHHhhhh
Confidence 99999999997743
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1e-28 Score=309.75 Aligned_cols=366 Identities=17% Similarity=0.187 Sum_probs=202.7
Q ss_pred EEEeCCCCccccCccccCCCCCceeeccCcccccc-CcccccccccceeeccCccccccccccccCcccceeecccCCCc
Q 042296 575 VFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNS 653 (1446)
Q Consensus 575 ~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 653 (1446)
+.|++++.++.+|..+. .+|++|+|++|+++.+ |..|+++++|++|++++|......|..|+++++|++|++++|.
T Consensus 9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~- 85 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH- 85 (549)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred eEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-
Confidence 34666667777776554 5677777777777655 4567777777777777764333333557777777777777776
Q ss_pred ccccCCc-ccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCC
Q 042296 654 LEEMPRG-IGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNT 732 (1446)
Q Consensus 654 ~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 732 (1446)
+..+|.. ++++++|++|+ +++|...
T Consensus 86 l~~~~~~~~~~l~~L~~L~------------------------------------------------------Ls~n~l~ 111 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLN------------------------------------------------------LMGNPYQ 111 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEE------------------------------------------------------CTTCCCS
T ss_pred cCccCHHHhccCCCCcEEE------------------------------------------------------CCCCccc
Confidence 4444433 55555555551 1111110
Q ss_pred CCCCCCCchhHHHHhccCCCCCCcceEEEeccC-CCCCC-cccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeec
Q 042296 733 DTDGSRDLGTETRVLDMLRPHQNLEQFFISGYG-GTKFP-IWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEV 809 (1446)
Q Consensus 733 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 809 (1446)
.. ..+..+..+++|+.|++++|. ...+| ..+.. +++|+.|++++|...+..| .++.+++|+.|++
T Consensus 112 ~~----------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 112 TL----------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG--LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp SS----------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT--CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred cc----------chhhhhhccCCccEEECCCCccccccCHhhhhc--ccccCeeeccCCcccccChhhhhccccCceEec
Confidence 00 001123334455555555554 33444 23443 7888888888888766555 6777888888887
Q ss_pred ccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCC------CCCCCC
Q 042296 810 CRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGT------FPERLP 883 (1446)
Q Consensus 810 ~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~------~p~~l~ 883 (1446)
+++.. ..++..+. . .+++|+.|++++| .+.+. +...++
T Consensus 180 ~~n~~-~~~~~~~~------------------------------~----~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 180 HLSES-AFLLEIFA------------------------------D----ILSSVRYLELRDT-NLARFQFSPLPVDEVSS 223 (549)
T ss_dssp ECSBS-TTHHHHHH------------------------------H----STTTBSEEEEESC-BCTTCCCCCCSSCCCCC
T ss_pred ccCcc-cccchhhH------------------------------h----hcccccEEEccCC-ccccccccccchhhhhh
Confidence 76531 11110000 0 1677788888777 44421 123466
Q ss_pred CccEEEEeccCC-------hhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCCCccee
Q 042296 884 SLEILVIQSCEE-------LLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEEL 956 (1446)
Q Consensus 884 ~L~~L~l~~~~~-------l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L 956 (1446)
+|+.|++++|.. ++..+..+++|+.+++++|......... ......+..+++|+.|
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-----------------~~~~~~~~~l~~L~~L 286 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN-----------------PSESDVVSELGKVETV 286 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC-----------------CCTTTCCCCCTTCCEE
T ss_pred cccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc-----------------ccchhhhhhhcccccc
Confidence 788888877642 2334456778888888887532211000 0001112245666666
Q ss_pred eecccccchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccccCCccc
Q 042296 957 EIANIDELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLK 1036 (1446)
Q Consensus 957 ~i~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~ 1036 (1446)
.+.++.--. .. .+ ..+. ......++|+.|++++| .++.+|...+..+++|+
T Consensus 287 ~l~~~~i~~-~~-----~~--------------~~l~--------~~~~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 287 TIRRLHIPQ-FY-----LF--------------YDLS--------TVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLE 337 (549)
T ss_dssp EEESCBCSC-GG-----GS--------------CCCC--------HHHHHSTTCCEEEEESS-CCCCCCHHHHHHCTTCC
T ss_pred cccccccch-hh-----hc--------------ccch--------hhhhhcccceEEEeccC-ccccCCHHHHhcCcccc
Confidence 665532100 00 00 0000 11123467888888887 46778874456788888
Q ss_pred EEEeccCCCCcccCC----CCCCCCccEEEEeecCCcccCCc---cccCCCCCCccEEEEEecCC
Q 042296 1037 EIGIYNCSSLVCFPE----AALPSQLRIISIQYCNALKSLPV---TWMHDTNTSLETLKVYGCNL 1094 (1446)
Q Consensus 1037 ~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~~~~l~~~p~---~~~~~~~~~L~~L~l~~~~~ 1094 (1446)
+|++++|.....++. ...+++|+.|++++|.. +.++. .+. .+++|++|++++|..
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~--~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILL--TLKNLTSLDISRNTF 399 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGG--GCTTCCEEECTTCCC
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhh--cCCCCCEEECCCCCC
Confidence 888888754443321 23467788888888874 33321 122 234577777777754
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=8.4e-28 Score=314.70 Aligned_cols=507 Identities=17% Similarity=0.153 Sum_probs=304.0
Q ss_pred CCCcceecccccccCCCCcchhHHHHhhhcCceeEEEEeCCCC-cccc-CccccCCCCCceeeccCcccccc-Ccccccc
Q 042296 540 TEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFSLCGYQ-ISEL-PNSVGDLRYLRYLNLSRTCIEIL-PDSINKL 616 (1446)
Q Consensus 540 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L 616 (1446)
.++++.|.+..+ .+....+..+.++++|++|+|++|. +..+ |..|+++++|++|+|++|.+..+ |..|+++
T Consensus 23 p~~l~~LdLs~N------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFN------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEESC------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCcCEEECCCC------cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 467777755443 2223334455689999999999885 5566 78899999999999999998866 7889999
Q ss_pred cccceeeccCcccccccccc--ccCcccceeecccCCCcccccC--CcccccccccccCceEecCCCCCChhhhhhh--h
Q 042296 617 YNLHTLLLEDCDRLKKLCAD--MGNLIKLHHLNNSTTNSLEEMP--RGIGKLTFLQTLCNFAVGKDSGSGLQDLKLL--M 690 (1446)
Q Consensus 617 ~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L--~ 690 (1446)
++|++|+|++|.....+|.. |++|++|++|++++|. +..++ ..++++++|++|.... ..........+..+ .
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHC
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCC
Confidence 99999999998654556655 8899999999999987 55443 4688899999884332 22222222333333 3
Q ss_pred cccCeeEEeeccCCCCcchhhhhhccCCC------CCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEecc
Q 042296 691 YLRGTLKISKLENVKHVGDAKEAQLDKKK------NLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGY 764 (1446)
Q Consensus 691 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 764 (1446)
.|+ .+.+..- ......+..+..+. .|+.|+++.|....... ..+........++.|.+..+
T Consensus 175 ~L~-~L~L~~n----~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 175 TLS-FFSLAAN----SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT--------GNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp SSC-CCEECCS----BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT--------SGGGGTSCSCCBSEEECCSS
T ss_pred ccc-eEECCCC----ccccccccchhhcCCccccCceeEEecCCCcCchhHH--------HHHHhhcCcccccceecccc
Confidence 333 3333321 11111112222222 37777777654331110 01111112234555555422
Q ss_pred CCCC------C----CcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeecccccceeEeCccccCCCCCCCCCC
Q 042296 765 GGTK------F----PIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPC 833 (1446)
Q Consensus 765 ~~~~------~----p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 833 (1446)
.... + +..+.....++|+.|++++|......+ .+..+++|+.|++++|......+..+. .+++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------~l~~ 315 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY------GLDN 315 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT------TCSS
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc------CCCC
Confidence 1100 0 011111113578888888877655544 577788888888877654433333332 2677
Q ss_pred cceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCC---CCCCCccEEEEeccCChhhcCCCCCcccEEE
Q 042296 834 LETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFP---ERLPSLEILVIQSCEELLVSIRRLPALCKFE 910 (1446)
Q Consensus 834 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~ 910 (1446)
|+.|++.++ .+....+..+.. +++|+.|++++| .+.+..+ ..+++|+.|++++|... .+..+++|+.|+
T Consensus 316 L~~L~Ls~N-~l~~~~~~~~~~----l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~L~~L~ 387 (844)
T 3j0a_A 316 LQVLNLSYN-LLGELYSSNFYG----LPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALT--TIHFIPSIPDIF 387 (844)
T ss_dssp CCEEEEESC-CCSCCCSCSCSS----CTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSC--CCSSCCSCSEEE
T ss_pred CCEEECCCC-CCCccCHHHhcC----CCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCC--cccCCCCcchhc
Confidence 888888763 344444444443 778888888887 5552222 24677888888877643 344577788888
Q ss_pred EecccCeeeeCCCCCCceeeecccccccccccccc---hhccCCCcceeeecccccchhhhhcccccccccccccccccc
Q 042296 911 ISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGP---LKLQLPKLEELEIANIDELTYIWQNETRLLQDISSLKRLKIK 987 (1446)
Q Consensus 911 l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~---~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 987 (1446)
+++|..... +..... +..++++++...... ....+++|+.|+++++. ++.+... ..+...++|+.|+++
T Consensus 388 l~~N~l~~l--~~~~~~---l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 388 LSGNKLVTL--PKINLT---ANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGD--QTPSENPSLEQLFLG 459 (844)
T ss_dssp EESCCCCCC--CCCCTT---CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSS--SSSCSCTTCCBCEEE
T ss_pred cCCCCcccc--cccccc---cceeecccCccccCchhhhhhcCCccceeeCCCCc-ccccccc--cccccCCccccccCC
Confidence 887764422 111111 222344444332211 12367888888888753 3222111 123446778888887
Q ss_pred cCCCcccchhhhhhhccCccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCCCCCccEEEEeecC
Q 042296 988 SCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCN 1067 (1446)
Q Consensus 988 ~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~ 1067 (1446)
++.--...........+..+++|+.|++++| .++.++...+..+++|+.|++++| .++.++...+.++|+.|++++|.
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCc
Confidence 7642211111111234667788888888888 566666657888888999999885 67777777777888888998888
Q ss_pred CcccCCccccCCCCCCccEEEEEecCCCc
Q 042296 1068 ALKSLPVTWMHDTNTSLETLKVYGCNLLT 1096 (1446)
Q Consensus 1068 ~l~~~p~~~~~~~~~~L~~L~l~~~~~l~ 1096 (1446)
..+..|..+ ++|+.|++++|+...
T Consensus 538 l~~~~~~~~-----~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 538 LLAPNPDVF-----VSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCCCSCCC-----SSCCEEEEEEECCCC
T ss_pred CCCCChhHh-----CCcCEEEecCCCccc
Confidence 766666443 358888888887644
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=7e-28 Score=304.00 Aligned_cols=247 Identities=16% Similarity=0.139 Sum_probs=148.6
Q ss_pred ccCccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCC
Q 042296 1003 QLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNT 1082 (1446)
Q Consensus 1003 ~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~ 1082 (1446)
.+..+++|+.|++++| .+..+|. .+..+ +|++|++++| .+..+|. ..+++|+.|++++|......+. ..++
T Consensus 277 ~~~~l~~L~~L~l~~~-~l~~l~~-~~~~~-~L~~L~l~~n-~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~----~~~~ 347 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSV-TIERVKD-FSYNF-GWQHLELVNC-KFGQFPT-LKLKSLKRLTFTSNKGGNAFSE----VDLP 347 (570)
T ss_dssp TTGGGTTCSEEEEESC-EECSCCB-CCSCC-CCSEEEEESC-BCSSCCB-CBCSSCCEEEEESCBSCCBCCC----CBCT
T ss_pred hhcCcCcccEEEecCc-cchhhhh-hhccC-CccEEeeccC-cccccCc-ccccccCEEeCcCCcccccccc----ccCC
Confidence 3455677788888777 4556766 55566 7888888876 3445664 3566788888887775554443 3445
Q ss_pred CccEEEEEecCCCccc---cCCCCCCCccEEEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCC
Q 042296 1083 SLETLKVYGCNLLTYI---TSVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELP 1159 (1446)
Q Consensus 1083 ~L~~L~l~~~~~l~~~---~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 1159 (1446)
+|++|++++|...... ......++|+.|++.++. ++.++. .+..+++|+.|++.+|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-------~~~~l~~L~~L~l~~n------------- 406 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS-------NFLGLEQLEHLDFQHS------------- 406 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEE-------EEETCTTCCEEECTTS-------------
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccc-------cccccCCCCEEEccCC-------------
Confidence 6777777777543321 111223455555555542 211110 0223344444444443
Q ss_pred CcCCceeecccCcccccc-cCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCc-cccCccCCCCCcccEE
Q 042296 1160 DSLEHLEVGICSKLKFLS-CSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNL-KILPGGLHKLRHLQEV 1237 (1446)
Q Consensus 1160 ~~L~~L~l~~c~~L~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L 1237 (1446)
......+ .....+++|+.|++++|......|..+.++++|+.|++++|... +.+|..+..+++|++|
T Consensus 407 -----------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 407 -----------NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp -----------EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred -----------ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 2222211 12334566777777777766666777777888888888877665 4677777788888888
Q ss_pred EEeccCCCcccCCCCCCcccccceecccccCcccccc----cCCccceEeeCCCCCcc
Q 042296 1238 GIWSCGNLVSFPEGGLPSANLTKLQITWCDKLEALPE----GMNSLRELNIGGLASMV 1291 (1446)
Q Consensus 1238 ~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~lp~----~l~~L~~L~l~~c~~l~ 1291 (1446)
++++|...+..|..+..+++|++|++++|. ++.+|. .+++|+.|++++|+-..
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccC
Confidence 888774433346666677788888888764 333332 45678888887765433
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.5e-28 Score=310.20 Aligned_cols=375 Identities=15% Similarity=0.177 Sum_probs=225.6
Q ss_pred CccccccCcccccccccceeeccCcccccc-----------------cccccc--CcccceeecccCCCcccccCCcccc
Q 042296 603 RTCIEILPDSINKLYNLHTLLLEDCDRLKK-----------------LCADMG--NLIKLHHLNNSTTNSLEEMPRGIGK 663 (1446)
Q Consensus 603 ~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-----------------lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~ 663 (1446)
+|+++.+|..++++++|++|+|++|...+. +|..++ ++++|++|++++|...+.+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 456777899999999999999999863332 899988 9999999999999877788888888
Q ss_pred cccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcch-hhhhhccCCCCCceEEEEeeeCCCCCCCCCchh
Q 042296 664 LTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGD-AKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGT 742 (1446)
Q Consensus 664 L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 742 (1446)
+++|++|....+ ..... ..+..+..+
T Consensus 272 l~~L~~L~Ls~n-----------------------------~~l~~~~lp~~~~~L------------------------ 298 (636)
T 4eco_A 272 LPEMQLINVACN-----------------------------RGISGEQLKDDWQAL------------------------ 298 (636)
T ss_dssp CSSCCEEECTTC-----------------------------TTSCHHHHHHHHHHH------------------------
T ss_pred CCCCCEEECcCC-----------------------------CCCccccchHHHHhh------------------------
Confidence 888888721110 00111 111111111
Q ss_pred HHHHhccCCCCCCcceEEEeccCCCCCCc--ccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceeecccccceeEeCc
Q 042296 743 ETRVLDMLRPHQNLEQFFISGYGGTKFPI--WLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLEVCRMNRVKSLGS 820 (1446)
Q Consensus 743 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~ 820 (1446)
..+..+++|+.|++++|....+|. ++.. +++|+.|++++|...+.+|.++.+++|+.|++++|... .++.
T Consensus 299 -----~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~ 370 (636)
T 4eco_A 299 -----ADAPVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPA 370 (636)
T ss_dssp -----HHSGGGGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCT
T ss_pred -----hccccCCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccH
Confidence 012223567777777777777777 6665 78888888888887767777778888888888776422 3221
Q ss_pred cccCCCCCCCCCCcceeeccccccccccccccccCccccCCc-ccEEEecCCCCCcCCCCCCCCCccEEEEeccCChhhc
Q 042296 821 QFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPN-LRELHLLRCSKLQGTFPERLPSLEILVIQSCEELLVS 899 (1446)
Q Consensus 821 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~ 899 (1446)
.+ .. +++ |+.|++++| .++ .+|..+..
T Consensus 371 ~l-------------------------------~~----l~~~L~~L~Ls~N-~l~-~lp~~~~~--------------- 398 (636)
T 4eco_A 371 NF-------------------------------CG----FTEQVENLSFAHN-KLK-YIPNIFDA--------------- 398 (636)
T ss_dssp TS-------------------------------EE----ECTTCCEEECCSS-CCS-SCCSCCCT---------------
T ss_pred hh-------------------------------hh----hcccCcEEEccCC-cCc-ccchhhhh---------------
Confidence 11 11 566 777777777 454 55532211
Q ss_pred CCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCCCcceeeecccccchhhhhcccccccccc
Q 042296 900 IRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEELEIANIDELTYIWQNETRLLQDIS 979 (1446)
Q Consensus 900 l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~~l~~~~~~~~~~~~~l~ 979 (1446)
..+++|+.|++++|.... ..+..++. +
T Consensus 399 -~~l~~L~~L~Ls~N~l~~--------------------------~~p~~l~~--------~------------------ 425 (636)
T 4eco_A 399 -KSVSVMSAIDFSYNEIGS--------------------------VDGKNFDP--------L------------------ 425 (636)
T ss_dssp -TCSSCEEEEECCSSCTTT--------------------------TTTCSSCT--------T------------------
T ss_pred -cccCccCEEECcCCcCCC--------------------------cchhhhcc--------c------------------
Confidence 112355555555543110 00000000 0
Q ss_pred cccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCCC----
Q 042296 980 SLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALP---- 1055 (1446)
Q Consensus 980 ~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~---- 1055 (1446)
. .....+++|+.|++++| .+..+|...+..+++|++|++++| .++.+|...+.
T Consensus 426 -----~----------------~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 426 -----D----------------PTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENE 482 (636)
T ss_dssp -----C----------------SSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTE
T ss_pred -----c----------------cccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccc
Confidence 0 00012356777888877 455777656667888888888885 45567654331
Q ss_pred -----CCccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCCccccCCCCCCCccEEEEecCCCCcccccccccccC
Q 042296 1056 -----SQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYITSVQLPASLKHVEIEDCSNLRTLREEGEIHNG 1130 (1446)
Q Consensus 1056 -----~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~ 1130 (1446)
++|+.|++++|... .+|..+.....++|+.|++++|.... +|.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~------------------------------ 530 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT------------------------------ 530 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC------------------------------
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh------------------------------
Confidence 17888888887744 67765542344557777777765432 221
Q ss_pred CCCCCCcccEEEeccCCchhhcccCCCCCCcCCceeecccCcccccccCCCCccccceeeeccCCCchhhhhhhcCCCCc
Q 042296 1131 SRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHLEVGICSKLKFLSCSGNLPQALKFICVFRCSKLESIAERLDNNTSL 1210 (1446)
Q Consensus 1131 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L 1210 (1446)
.+..+++|+.|+++++. ++++|...+.+|..+..+++|
T Consensus 531 ~~~~l~~L~~L~Ls~N~------------------------------------------~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 531 QPLNSSTLKGFGIRNQR------------------------------------------DAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp GGGGCSSCCEEECCSCB------------------------------------------CTTCCBCCCCCCTTGGGCSSC
T ss_pred hhhcCCCCCEEECCCCc------------------------------------------ccccCcccccChHHHhcCCCC
Confidence 01112333333333322 113444455566667777778
Q ss_pred cEEEeccccCccccCccCCCCCcccEEEEeccC
Q 042296 1211 EVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCG 1243 (1446)
Q Consensus 1211 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~ 1243 (1446)
+.|++++|.. +.+|..+. ++|++|++++|+
T Consensus 569 ~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 569 TQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 8888877765 66776654 677888887774
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=6.9e-28 Score=307.09 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=105.3
Q ss_pred ccccccCcccccccccceeeccCccccc-----------------ccccccc--CcccceeecccCCCcccccCCccccc
Q 042296 604 TCIEILPDSINKLYNLHTLLLEDCDRLK-----------------KLCADMG--NLIKLHHLNNSTTNSLEEMPRGIGKL 664 (1446)
Q Consensus 604 ~~i~~lp~~i~~L~~L~~L~L~~~~~~~-----------------~lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~L 664 (1446)
|+++.+|..|++|++|++|+|++|...+ .+|..++ +|++|++|++++|.....+|..+++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 6677789889999999999999986444 2888887 99999999999988778888888888
Q ss_pred ccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcch-hhhhhccCCCCCceEEEEeeeCCCCCCCCCchhH
Q 042296 665 TFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGD-AKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTE 743 (1446)
Q Consensus 665 ~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 743 (1446)
++|++|....+ ..... ..+..+..+
T Consensus 515 ~~L~~L~Ls~N-----------------------------~~lsg~~iP~~i~~L------------------------- 540 (876)
T 4ecn_A 515 PELQSLNIACN-----------------------------RGISAAQLKADWTRL------------------------- 540 (876)
T ss_dssp SSCCEEECTTC-----------------------------TTSCHHHHHHHHHHH-------------------------
T ss_pred CCCCEEECcCC-----------------------------CCcccccchHHHHhh-------------------------
Confidence 88888721100 00111 111111110
Q ss_pred HHHhccCCCCCCcceEEEeccCCCCCCc--ccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceeeccccc
Q 042296 744 TRVLDMLRPHQNLEQFFISGYGGTKFPI--WLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLEVCRMN 813 (1446)
Q Consensus 744 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 813 (1446)
...+..+++|+.|++++|....+|. ++.. +++|+.|+|++|.+. .+|.++.+++|+.|++++|.
T Consensus 541 ---~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 541 ---ADDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp ---HHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC
T ss_pred ---hhcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc
Confidence 0134455677788888887777887 6655 788888888888766 67778888888888887764
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=301.38 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=67.9
Q ss_pred CCccccceeeeccCCCc-hhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCC-CCCCcccc
Q 042296 1181 NLPQALKFICVFRCSKL-ESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPE-GGLPSANL 1258 (1446)
Q Consensus 1181 ~~~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L 1258 (1446)
..+++|+.|++++|... ..+|..+..+++|+.|++++|...+..|..+..+++|++|++++| .++.+|. .+..+++|
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCC
Confidence 34566777777777655 356777888888999999888777777888888889999999888 4555554 45677888
Q ss_pred cceecccccCcccc
Q 042296 1259 TKLQITWCDKLEAL 1272 (1446)
Q Consensus 1259 ~~L~l~~c~~l~~l 1272 (1446)
+.|++++|+.....
T Consensus 521 ~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 521 QKIWLHTNPWDCSC 534 (570)
T ss_dssp CEEECCSSCBCCCT
T ss_pred cEEEecCCcccCCC
Confidence 89998887654443
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4.1e-27 Score=295.09 Aligned_cols=99 Identities=26% Similarity=0.243 Sum_probs=61.1
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccC-cccccccccceeeccCccccccccc-cccCcccceeec
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 647 (1446)
+.|++|+|++|.++.+ |..|+++++|++|+|++|+++.+| ..|+++++|++|++++|. +..+|. .|+++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEE
Confidence 4566666666666655 456666666777777766666554 456666667777776663 444433 366666677777
Q ss_pred ccCCCccc--ccCCcccccccccccC
Q 042296 648 NSTTNSLE--EMPRGIGKLTFLQTLC 671 (1446)
Q Consensus 648 l~~~~~~~--~~p~~i~~L~~L~~L~ 671 (1446)
+++|. +. .+|..++++++|++|.
T Consensus 105 Ls~n~-l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEE
T ss_pred CCCCc-ccccchhhhhhccCCccEEE
Confidence 66665 43 2345566666666663
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=287.76 Aligned_cols=189 Identities=16% Similarity=0.089 Sum_probs=119.6
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccC-cccccccccceeeccCccccccccccccCcccceeecccCCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 652 (1446)
++||+++|.++.+|..+. .+|++|+|++|.++.+| ..|.++++|++|++++|......|..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 467888888888877665 77888888888877665 567788888888888875333336677888888888888876
Q ss_pred cccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcch-hhhhhccCCCCCceEEEEeeeC
Q 042296 653 SLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGD-AKEAQLDKKKNLKVLLLQWTCN 731 (1446)
Q Consensus 653 ~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~ 731 (1446)
+..+|.. .+++|++|+...+ .... ..+..+.++++|+.|++++|..
T Consensus 81 -l~~lp~~--~l~~L~~L~L~~N------------------------------~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 81 -LVKISCH--PTVNLKHLDLSFN------------------------------AFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp -CCEEECC--CCCCCSEEECCSS------------------------------CCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred -eeecCcc--ccCCccEEeccCC------------------------------ccccccchhhhccCCcceEEEecCccc
Confidence 6677765 6667776622111 0111 1223456667777777777543
Q ss_pred CCCCCCCCchhHHHHhccCCCCCCc--ceEEEeccCC---CCCCcccCcCccC-CceEEEeeCCCCCCCCC--CCCCcCc
Q 042296 732 TDTDGSRDLGTETRVLDMLRPHQNL--EQFFISGYGG---TKFPIWLGDSYFS-NLVTLKFQNCHKCTSLP--SIGKLLS 803 (1446)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~l~-~L~~L~L~~~~~~~~l~--~l~~l~~ 803 (1446)
.. ..+..+++| +.|++++|.. ...|.++.. +. ....+++.+|...+.++ .+..+++
T Consensus 128 ~~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 191 (520)
T 2z7x_B 128 EK--------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKTVAN 191 (520)
T ss_dssp CG--------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTTCSE
T ss_pred ch--------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhcccc
Confidence 21 122334444 7778877765 334554433 22 34456667777666555 4667788
Q ss_pred cceeeccccc
Q 042296 804 LKHLEVCRMN 813 (1446)
Q Consensus 804 L~~L~L~~~~ 813 (1446)
|+.|++++|.
T Consensus 192 L~~L~l~~n~ 201 (520)
T 2z7x_B 192 LELSNIKCVL 201 (520)
T ss_dssp EEECCEEECC
T ss_pred eeeccccccc
Confidence 8888887653
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.4e-27 Score=297.86 Aligned_cols=467 Identities=15% Similarity=0.134 Sum_probs=244.0
Q ss_pred ceeEEEEeCCCCcc-ccCccccCCCCCceeeccCcccc-------------ccCcccccccccceeeccCcccccccccc
Q 042296 571 HRLKVFSLCGYQIS-ELPNSVGDLRYLRYLNLSRTCIE-------------ILPDSINKLYNLHTLLLEDCDRLKKLCAD 636 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-------------~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 636 (1446)
.+++.|+|+++.++ .+|.+|++|++|++|+|++|.+. .+|... +.+|+ ++++++......|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 46888999999887 67889999999999999998763 334333 45555 666665444444544
Q ss_pred ccC-cccceeecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccC-CCCcchhhhhh
Q 042296 637 MGN-LIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLEN-VKHVGDAKEAQ 714 (1446)
Q Consensus 637 i~~-L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~-~~~~~~~~~~~ 714 (1446)
+.. +.++..+++.... +. ......++.+. + .. .+.... .+..
T Consensus 158 ~~~~~~~l~~~~l~~~~-~~-----~~~~~~l~~l~--------------------l---------~~~~n~l~~-ip~~ 201 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKS-IK-----KSSRITLKDTQ--------------------I---------GQLSNNITF-VSKA 201 (636)
T ss_dssp SCHHHHHHHHHCTTSCC-CC-----CCCCCCCCTTT--------------------T---------TCCSCEEEE-ECGG
T ss_pred HHHHHHHHhhcCccccc-cc-----cccccchhhhh--------------------h---------ccccCCCcc-CCHH
Confidence 432 2233333332211 00 00011111110 0 00 011112 2333
Q ss_pred ccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCC
Q 042296 715 LDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTS 794 (1446)
Q Consensus 715 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 794 (1446)
+.++++|+.|+|++|...+...... +. +. . .++....+|..+.-..+++|++|++++|...+.
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~---------~~-~~-~------~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEA---------WE-NE-N------SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSS---------CS-CT-T------SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred HhcccCCCEEECcCCcccccccccc---------cc-cc-c------cchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 4455555555555443221000000 00 00 0 000000167776611288899999999888887
Q ss_pred CC-CCCCcCccceeeccccccee--EeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCC
Q 042296 795 LP-SIGKLLSLKHLEVCRMNRVK--SLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRC 871 (1446)
Q Consensus 795 l~-~l~~l~~L~~L~L~~~~~l~--~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 871 (1446)
+| .++++++|++|++++|..+. .++..+.. |. .+. .+++|+.|++++|
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~---------L~----------------~~~----~l~~L~~L~L~~n 315 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQA---------LA----------------DAP----VGEKIQIIYIGYN 315 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH---------HH----------------HSG----GGGTCCEEECCSS
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHh---------hh----------------ccc----cCCCCCEEECCCC
Confidence 77 68888899999988875222 22211100 00 000 0578888888888
Q ss_pred CCCcCCCCCCCCCccEEEEeccCChhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCC
Q 042296 872 SKLQGTFPERLPSLEILVIQSCEELLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLP 951 (1446)
Q Consensus 872 ~~l~~~~p~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~ 951 (1446)
.++ .+|. ...+..+++|+.|++++|....
T Consensus 316 -~l~-~ip~----------------~~~l~~l~~L~~L~L~~N~l~g--------------------------------- 344 (636)
T 4eco_A 316 -NLK-TFPV----------------ETSLQKMKKLGMLECLYNQLEG--------------------------------- 344 (636)
T ss_dssp -CCS-SCCC----------------HHHHTTCTTCCEEECCSCCCEE---------------------------------
T ss_pred -cCC-ccCc----------------hhhhccCCCCCEEeCcCCcCcc---------------------------------
Confidence 555 4552 0034556666777666654110
Q ss_pred CcceeeecccccchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCcccccc
Q 042296 952 KLEELEIANIDELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSL 1031 (1446)
Q Consensus 952 ~L~~L~i~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~ 1031 (1446)
.++ .++.+++|+.|++++|. +..+|. .+..
T Consensus 345 -------------------------~ip-----------------------~~~~l~~L~~L~L~~N~-l~~lp~-~l~~ 374 (636)
T 4eco_A 345 -------------------------KLP-----------------------AFGSEIKLASLNLAYNQ-ITEIPA-NFCG 374 (636)
T ss_dssp -------------------------ECC-----------------------CCEEEEEESEEECCSSE-EEECCT-TSEE
T ss_pred -------------------------chh-----------------------hhCCCCCCCEEECCCCc-cccccH-hhhh
Confidence 000 12234688889999984 558887 6888
Q ss_pred CCc-ccEEEeccCCCCcccCCCCC---CCCccEEEEeecCCcccCCccccC-----CCCCCccEEEEEecCCCccccCCC
Q 042296 1032 INS-LKEIGIYNCSSLVCFPEAAL---PSQLRIISIQYCNALKSLPVTWMH-----DTNTSLETLKVYGCNLLTYITSVQ 1102 (1446)
Q Consensus 1032 l~~-L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~~~~l~~~p~~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~ 1102 (1446)
+++ |++|++++|. ++.+|.... +++|+.|++++|...+..|..+.. ...++|++|++++|...
T Consensus 375 l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~------- 446 (636)
T 4eco_A 375 FTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS------- 446 (636)
T ss_dssp ECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-------
T ss_pred hcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-------
Confidence 888 9999999864 557775322 237888888888877766655431 12234666666665432
Q ss_pred CCCCccEEEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCCcCCceeecccCcccccccCCCC
Q 042296 1103 LPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHLEVGICSKLKFLSCSGNL 1182 (1446)
Q Consensus 1103 ~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 1182 (1446)
.++.. .+..+++|+.|+++++.-- .+.. ..-.. .......
T Consensus 447 -----------------~lp~~------~~~~l~~L~~L~Ls~N~l~-~i~~------~~~~~----------~~~~~~~ 486 (636)
T 4eco_A 447 -----------------KFPKE------LFSTGSPLSSINLMGNMLT-EIPK------NSLKD----------ENENFKN 486 (636)
T ss_dssp -----------------SCCTH------HHHTTCCCSEEECCSSCCS-BCCS------SSSEE----------TTEECTT
T ss_pred -----------------cCCHH------HHccCCCCCEEECCCCCCC-CcCH------HHhcc----------ccccccc
Confidence 11100 0112355666666664321 1100 00000 0000011
Q ss_pred ccccceeeeccCCCchhhhhhhc--CCCCccEEEeccccCccccCccCCCCCcccEEEEec------cCCCcccCCCCCC
Q 042296 1183 PQALKFICVFRCSKLESIAERLD--NNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWS------CGNLVSFPEGGLP 1254 (1446)
Q Consensus 1183 ~~~L~~L~l~~~~~l~~~~~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~------c~~l~~lp~~~~~ 1254 (1446)
+++|+.|++++|... .+|..+. .+++|+.|++++|...+ +|..+.++++|++|++++ |...+.+|..+..
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 235666666665433 5555554 66666666666665544 666666666666666643 3334455555555
Q ss_pred cccccceecccccCcccccc
Q 042296 1255 SANLTKLQITWCDKLEALPE 1274 (1446)
Q Consensus 1255 ~~~L~~L~l~~c~~l~~lp~ 1274 (1446)
+++|++|++++|.. +.+|.
T Consensus 565 l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp CSSCCEEECCSSCC-CBCCS
T ss_pred CCCCCEEECCCCcC-CccCH
Confidence 55555555555433 44443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.3e-25 Score=287.98 Aligned_cols=98 Identities=29% Similarity=0.343 Sum_probs=84.1
Q ss_pred ceeEEEEeCCCCccccC-ccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccccc-cccCcccceeec
Q 042296 571 HRLKVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 647 (1446)
..+++|||++|.|+.+| .+|.++++||+|+|++|+|+.+|+ .|.+|++|++|+|++| .+..+|. .|.+|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 36789999999999985 579999999999999999998865 6899999999999998 4777775 489999999999
Q ss_pred ccCCCcccccCC-ccccccccccc
Q 042296 648 NSTTNSLEEMPR-GIGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~-~i~~L~~L~~L 670 (1446)
+++|. +..+|. .++++++|++|
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKEL 153 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEE
T ss_pred CCCCc-CCCCChhhhhcCcccCee
Confidence 99997 777775 47888888888
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=3.5e-26 Score=291.49 Aligned_cols=205 Identities=18% Similarity=0.163 Sum_probs=142.7
Q ss_pred HHHhhhcCceeEEEEeCCCCccc------------------cCcccc--CCCCCceeeccCcccc-ccCcccccccccce
Q 042296 563 ILQRLLKLHRLKVFSLCGYQISE------------------LPNSVG--DLRYLRYLNLSRTCIE-ILPDSINKLYNLHT 621 (1446)
Q Consensus 563 ~~~~~~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~ 621 (1446)
+|..+.++++|++|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..|++|++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67777799999999999999887 898888 9999999999999855 78999999999999
Q ss_pred eeccCcc-ccc-cccccccCcc-------cceeecccCCCcccccCC--cccccccccccCceEecCCCCCChhhhhhhh
Q 042296 622 LLLEDCD-RLK-KLCADMGNLI-------KLHHLNNSTTNSLEEMPR--GIGKLTFLQTLCNFAVGKDSGSGLQDLKLLM 690 (1446)
Q Consensus 622 L~L~~~~-~~~-~lp~~i~~L~-------~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~ 690 (1446)
|+|++|. ..+ .+|..+++++ +|++|++++|. +..+|. .++++++|++|....+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N--------------- 583 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN--------------- 583 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTS---------------
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCC---------------
Confidence 9999986 334 6888777776 99999999998 668888 8888888888832110
Q ss_pred cccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCC-cceEEEeccCCCCC
Q 042296 691 YLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQN-LEQFFISGYGGTKF 769 (1446)
Q Consensus 691 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~ 769 (1446)
... ..+ .+..+++|+.|++++|.... ++..+..+++ |+.|++++|....+
T Consensus 584 ---------------~l~-~lp-~~~~L~~L~~L~Ls~N~l~~------------lp~~l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 584 ---------------KVR-HLE-AFGTNVKLTDLKLDYNQIEE------------IPEDFCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp ---------------CCC-BCC-CCCTTSEESEEECCSSCCSC------------CCTTSCEECTTCCEEECCSSCCCSC
T ss_pred ---------------Ccc-cch-hhcCCCcceEEECcCCcccc------------chHHHhhccccCCEEECcCCCCCcC
Confidence 011 111 35556667777776654331 2234555566 77777777776666
Q ss_pred CcccCcCccCCceEEEeeCCCCCCCCCCCC------CcCccceeecccc
Q 042296 770 PIWLGDSYFSNLVTLKFQNCHKCTSLPSIG------KLLSLKHLEVCRM 812 (1446)
Q Consensus 770 p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~------~l~~L~~L~L~~~ 812 (1446)
|.++.....++|+.|++++|.+.+.+|.+. .+++|+.|++++|
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 766654333447777777776655444222 2335555555544
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=278.78 Aligned_cols=274 Identities=12% Similarity=0.087 Sum_probs=156.3
Q ss_pred ccccccEEEeeccc-------CccccCccccccCCcccEEEeccCCCCcc----cCCCCCCCCccEEEEeecCCcccCCc
Q 042296 1006 LSCRIEYLELINCQ-------GLVKLPQTSLSLINSLKEIGIYNCSSLVC----FPEAALPSQLRIISIQYCNALKSLPV 1074 (1446)
Q Consensus 1006 ~~~~L~~L~l~~~~-------~l~~lp~~~~~~l~~L~~L~l~~c~~l~~----l~~~~~~~~L~~L~l~~~~~l~~~p~ 1074 (1446)
.+++|+.|++++|. ..+.+| .+..+++|+.|++++|..... ++.....++|+.|++++|...+.+|.
T Consensus 188 ~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 265 (520)
T 2z7x_B 188 TVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265 (520)
T ss_dssp TCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred cccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence 44566777777764 222333 577788888888887632211 11111235788888888876656776
Q ss_pred cccC---CCCCCccEEEEEecCCCccccCCCCCCCccEEEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchhh
Q 042296 1075 TWMH---DTNTSLETLKVYGCNLLTYITSVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLIT 1151 (1446)
Q Consensus 1075 ~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 1151 (1446)
.+.. ...++|+.+++++|.. .+|. ..... ...-++|+.|+++++.-.
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~--~~p~-----------------------~~~~~---~~~~~~L~~L~l~~n~l~-- 315 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVF--GFPQ-----------------------SYIYE---IFSNMNIKNFTVSGTRMV-- 315 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCC--CSCT-----------------------HHHHH---HHHTCCCSEEEEESSCCC--
T ss_pred chhhcccccCceeEeccccccce--ecch-----------------------hhhhc---ccccCceeEEEcCCCccc--
Confidence 5421 2233466666665543 1110 00000 000023666666665321
Q ss_pred cccCCCCCCcCCceeecccCcccccccCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCcc--ccCccCC
Q 042296 1152 LFSKNELPDSLEHLEVGICSKLKFLSCSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLK--ILPGGLH 1229 (1446)
Q Consensus 1152 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~lp~~~~ 1229 (1446)
..+. ...+++|+.|++++|...+.+|..+..+++|+.|++++|.... .+|..+.
T Consensus 316 -----------------------~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 316 -----------------------HMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371 (520)
T ss_dssp -----------------------CCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT
T ss_pred -----------------------cccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh
Confidence 1110 0234567777777776666667777777888888887776554 4556677
Q ss_pred CCCcccEEEEeccCCCcccCCC-CCCcccccceecccccCcccccccC-CccceEeeCCCCCcccccccCcCCCCCCCcc
Q 042296 1230 KLRHLQEVGIWSCGNLVSFPEG-GLPSANLTKLQITWCDKLEALPEGM-NSLRELNIGGLASMVCFPVEADGAMFPSNLQ 1307 (1446)
Q Consensus 1230 ~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~c~~l~~lp~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~ 1307 (1446)
.+++|++|++++|.....+|.. +..+++|++|++++|.....+|..+ ++|+.|++++| .+..+|.... ..++|+
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~---~l~~L~ 447 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVV---KLEALQ 447 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGG---GCTTCC
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhh---cCCCCC
Confidence 7788888888777443336654 4445677777777766555666555 46777777665 3445554332 335677
Q ss_pred eEEEccCCCcchhhhcccCccCCCCCcceeeecCcC
Q 042296 1308 SLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLH 1343 (1446)
Q Consensus 1308 ~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 1343 (1446)
.|++++|... .++. ..+..+++|++|++++|+
T Consensus 448 ~L~L~~N~l~-~l~~---~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 448 ELNVASNQLK-SVPD---GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EEECCSSCCC-CCCT---TTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCC-ccCH---HHhccCCcccEEECcCCC
Confidence 7777776643 2322 236667777777777754
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.7e-24 Score=269.00 Aligned_cols=428 Identities=13% Similarity=0.051 Sum_probs=218.4
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccC-cccccccccceeeccCccccccc-cccccCcccceeecccCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~ 651 (1446)
++++++++.++.+|..+. .+|++|+|++|.|+.+| ..|+++++|++|++++|. +..+ |..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC
Confidence 566666666666665543 56666666666666554 356666666666666663 3333 455666666666666666
Q ss_pred CcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcch-hhhhhccCCCCCceEEEEeee
Q 042296 652 NSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGD-AKEAQLDKKKNLKVLLLQWTC 730 (1446)
Q Consensus 652 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~n~ 730 (1446)
. +..+|.. .+++|++|+...+ .... ..+..+.++++|+.|+++.|.
T Consensus 111 ~-l~~lp~~--~l~~L~~L~Ls~N------------------------------~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 111 R-LQNISCC--PMASLRHLDLSFN------------------------------DFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp C-CCEECSC--CCTTCSEEECCSS------------------------------CCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred c-CCccCcc--ccccCCEEECCCC------------------------------CccccCchHhhcccCcccEEecCCCc
Confidence 5 5566654 5555555521110 0000 011234555666666666554
Q ss_pred CCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCC--C-CCCcccCcCccCCceEEEeeCCCCCCCCC--CCCCcCccc
Q 042296 731 NTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGG--T-KFPIWLGDSYFSNLVTLKFQNCHKCTSLP--SIGKLLSLK 805 (1446)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~ 805 (1446)
.... .+..+..+ +|+.|++++|.. . ..|.++..-.. ....+++++|.....++ .+..+++|+
T Consensus 158 l~~~-----------~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 158 FRQL-----------DLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp CCTT-----------TTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred cccC-----------chhhhhhc-eeeEEEeecccccccccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEE
Confidence 3210 11112222 337777776654 2 22333322111 12245666666555554 456677777
Q ss_pred eeecccccc----eeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCCC
Q 042296 806 HLEVCRMNR----VKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPER 881 (1446)
Q Consensus 806 ~L~L~~~~~----l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~ 881 (1446)
.|+++++.. +......+. ..+.|+.|.+.++. +.......... ....++|++|++++| .+.+.+|..
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~------~l~~L~~L~L~~~~-l~~~~~~~~~~-~~~~~~L~~L~l~~n-~l~~~ip~~ 295 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELT------RGPTLLNVTLQHIE-TTWKCSVKLFQ-FFWPRPVEYLNIYNL-TITERIDRE 295 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHH------SCSSCEEEEEEEEE-ECHHHHHHHHH-HHTTSSEEEEEEEEE-EECSCCCCC
T ss_pred EecccccccccchHHHHHHHHh------ccCcceEEEecCCc-CcHHHHHHHHH-hhhcccccEEEEecc-Eeeccccch
Confidence 777776521 111111111 15666767666532 11100000000 001458889999888 566677765
Q ss_pred C-----CCccEEEEeccCChhhcCC--------CCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhc
Q 042296 882 L-----PSLEILVIQSCEELLVSIR--------RLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKL 948 (1446)
Q Consensus 882 l-----~~L~~L~l~~~~~l~~~l~--------~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~ 948 (1446)
+ ++|+.|.+.++......++ ...+|+.|++++|..... ..+.
T Consensus 296 ~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-------------------------~~~~ 350 (562)
T 3a79_B 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM-------------------------VCPP 350 (562)
T ss_dssp CCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC-------------------------CCCS
T ss_pred hhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc-------------------------cCcc
Confidence 5 6677666655432111111 124577777777653211 0112
Q ss_pred cCCCcceeeecccccchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccc
Q 042296 949 QLPKLEELEIANIDELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTS 1028 (1446)
Q Consensus 949 ~l~~L~~L~i~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~ 1028 (1446)
.+++|+.|+++++. ++... ...+..+++|+.|+++++. +..+. ..+..+..+++|+.|++++|.....+|...
T Consensus 351 ~l~~L~~L~l~~n~-l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 351 SPSSFTFLNFTQNV-FTDSV---FQGCSTLKRLQTLILQRNG-LKNFF--KVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp SCCCCCEEECCSSC-CCTTT---TTTCCSCSSCCEEECCSSC-CCBTT--HHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred CCCCceEEECCCCc-cccch---hhhhcccCCCCEEECCCCC-cCCcc--cchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 45667777777643 22111 1134455666666665542 22221 111234556677777777764443366555
Q ss_pred cccCCcccEEEeccCCCCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCC
Q 042296 1029 LSLINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLL 1095 (1446)
Q Consensus 1029 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l 1095 (1446)
+..+++|++|++++|.....+| ..++++|+.|++++|. ++.+|..+. ..++|++|++++|...
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~-~~l~~~L~~L~L~~N~-l~~ip~~~~--~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVF-RCLPPKVKVLDLHNNR-IMSIPKDVT--HLQALQELNVASNQLK 486 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGG-SSCCTTCSEEECCSSC-CCCCCTTTT--SSCCCSEEECCSSCCC
T ss_pred hcCcccCCEEECCCCCCCcchh-hhhcCcCCEEECCCCc-CcccChhhc--CCCCCCEEECCCCCCC
Confidence 6666777777777654333333 2233567777777665 445665544 3344667776666543
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=4.6e-24 Score=256.42 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=36.8
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCcccc-ccCcccccccccceeeccCccccccccccccCcccceeec
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIE-ILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLN 647 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 647 (1446)
+.++|++|++++|.+..+|.+|++|++|++|++++|.+. .+|.+++++++|+++++.+|.. .+|++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 456777777777777777777777777777777777766 6777777777777777766631 4567777
Q ss_pred ccCCCcccccCC
Q 042296 648 NSTTNSLEEMPR 659 (1446)
Q Consensus 648 l~~~~~~~~~p~ 659 (1446)
+++|. +..+|.
T Consensus 78 l~~~~-l~~lp~ 88 (454)
T 1jl5_A 78 LNNLG-LSSLPE 88 (454)
T ss_dssp CTTSC-CSCCCS
T ss_pred ecCCc-cccCCC
Confidence 77776 555553
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=5e-23 Score=263.87 Aligned_cols=523 Identities=17% Similarity=0.159 Sum_probs=268.7
Q ss_pred EEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccccc-cccCcccceeecccCCC
Q 042296 575 VFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 575 ~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~ 652 (1446)
+.+.++.+++++|..+. .++++|||++|+|+.+|. +|.++++|++|+|++| .+..+|. .|.+|++|++|+|++|.
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc
Confidence 45777888999998775 589999999999999974 7999999999999998 5777765 58999999999999997
Q ss_pred cccccCCc-ccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeC
Q 042296 653 SLEEMPRG-IGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCN 731 (1446)
Q Consensus 653 ~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 731 (1446)
+..+|.+ |++|++|++|
T Consensus 112 -l~~l~~~~f~~L~~L~~L------------------------------------------------------------- 129 (635)
T 4g8a_A 112 -IQSLALGAFSGLSSLQKL------------------------------------------------------------- 129 (635)
T ss_dssp -CCEECGGGGTTCTTCCEE-------------------------------------------------------------
T ss_pred -CCCCCHHHhcCCCCCCEE-------------------------------------------------------------
Confidence 7777643 4444444444
Q ss_pred CCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCc-ccCcCccCCceEEEeeCCCCCC-CCC-CCCCcCccceee
Q 042296 732 TDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPI-WLGDSYFSNLVTLKFQNCHKCT-SLP-SIGKLLSLKHLE 808 (1446)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~ 808 (1446)
++++|....+|. .+.. +++|+.|++++|.... .+| .++.+++|++|+
T Consensus 130 ----------------------------~Ls~N~l~~l~~~~~~~--L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 130 ----------------------------VAVETNLASLENFPIGH--LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp ----------------------------ECTTSCCCCSTTCCCTT--CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ----------------------------ECCCCcCCCCChhhhhc--CcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 333333333433 2333 8899999999998654 345 578899999999
Q ss_pred cccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCCCC--CCcc
Q 042296 809 VCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPERL--PSLE 886 (1446)
Q Consensus 809 L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l--~~L~ 886 (1446)
+++|.........+ ..|..+ ...+..++++.+ .+....+..+ ..+.
T Consensus 180 L~~N~l~~~~~~~l---------~~L~~l----------------------~~~~~~~~ls~n-~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 180 LSSNKIQSIYCTDL---------RVLHQM----------------------PLLNLSLDLSLN-PMNFIQPGAFKEIRLH 227 (635)
T ss_dssp CCSSCCCEECGGGG---------HHHHTC----------------------TTCCCEEECTTC-CCCEECTTTTTTCEEE
T ss_pred ccCccccccccccc---------cchhhh----------------------hhhhhhhhcccC-cccccCcccccchhhh
Confidence 98865332221111 111100 112233444444 2321112222 2233
Q ss_pred EEEEeccCC----hhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCCCcceeeecccc
Q 042296 887 ILVIQSCEE----LLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEELEIANID 962 (1446)
Q Consensus 887 ~L~l~~~~~----l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~ 962 (1446)
.+.+.++.. .+..+..++.++...+........ ..+.. .....+.....+....+....
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~---~~l~~--------------~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---GNLEK--------------FDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS---CCCSC--------------CCTTTTGGGGGSEEEEEEEEC
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccc---ccccc--------------ccccccccccchhhhhhhhhh
Confidence 444444321 122334445554444322110000 00000 000000011111111111100
Q ss_pred cchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccccCCcccEEEecc
Q 042296 963 ELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYN 1042 (1446)
Q Consensus 963 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~ 1042 (1446)
.-. .. ......+....+++.+.+.++. +..++ .+....+|+.|++.+
T Consensus 291 ~~~-------------------------~~-----~~~~~~~~~~~~l~~l~~~~~~-~~~~~--~~~~~~~L~~L~l~~ 337 (635)
T 4g8a_A 291 LDY-------------------------YL-----DGIIDLFNCLTNVSSFSLVSVT-IERVK--DFSYNFGWQHLELVN 337 (635)
T ss_dssp CCS-------------------------CE-----EECTTTTGGGTTCSEEEEESCE-EEECG--GGGSCCCCSEEEEES
T ss_pred hcc-------------------------cc-----cchhhhhhhhcccccccccccc-ccccc--ccccchhhhhhhccc
Confidence 000 00 0000112233455555555552 22222 234445566666666
Q ss_pred CCCCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCCccccC---CCCCCCccEEEEecCCCCc
Q 042296 1043 CSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYITS---VQLPASLKHVEIEDCSNLR 1119 (1446)
Q Consensus 1043 c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~sL~~L~l~~c~~L~ 1119 (1446)
|. +..++. ..++.|+.+.+.+|......+ ....++|+.+++++|........ .....+|+.+++..+....
T Consensus 338 ~~-~~~~~~-~~l~~L~~l~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~ 411 (635)
T 4g8a_A 338 CK-FGQFPT-LKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT 411 (635)
T ss_dssp CE-ESSCCC-CBCTTCCEEEEESCCSCCBCC----CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE
T ss_pred cc-ccCcCc-ccchhhhhcccccccCCCCcc----cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc
Confidence 42 222322 124456666666555322211 12234466666665544221110 0112234444443321110
Q ss_pred ccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCCcCCceeecccCccccccc-CCCCccccceeeeccCCCch
Q 042296 1120 TLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHLEVGICSKLKFLSC-SGNLPQALKFICVFRCSKLE 1198 (1446)
Q Consensus 1120 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~~L~~L~l~~~~~l~ 1198 (1446)
+ ...+..++.|+.+.+..+. .....+. ....+.++..++++.|....
T Consensus 412 -~-------~~~~~~l~~L~~l~l~~~~------------------------~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 412 -M-------SSNFLGLEQLEHLDFQHSN------------------------LKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp -E-------CSCCTTCTTCCEEECTTSE------------------------EESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred -c-------cccccccccccchhhhhcc------------------------cccccccccccccccccccccccccccc
Confidence 0 0112233344444444332 2222111 12234556666666666655
Q ss_pred hhhhhhcCCCCccEEEeccccCcc-ccCccCCCCCcccEEEEeccCCCccc-CCCCCCcccccceecccccCcccccc--
Q 042296 1199 SIAERLDNNTSLEVFKIGCCDNLK-ILPGGLHKLRHLQEVGIWSCGNLVSF-PEGGLPSANLTKLQITWCDKLEALPE-- 1274 (1446)
Q Consensus 1199 ~~~~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~L~~L~l~~c~~l~~lp~-- 1274 (1446)
..+..+..+++|+.|++++|.... ..|..+..+++|++|++++| .++.+ |..+..+++|++|++++|. ++.++.
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~ 537 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFP 537 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGG
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCc-CCCCChhH
Confidence 556666677777777777766443 35666777777777777777 34444 4455566777777777653 444432
Q ss_pred --cCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCC
Q 042296 1275 --GMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKI 1316 (1446)
Q Consensus 1275 --~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 1316 (1446)
++++|++|++++|.-....|.... .++++|+.|++++|+.
T Consensus 538 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDF 579 (635)
T ss_dssp GTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEECTTCCB
T ss_pred HhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEeeCCCC
Confidence 456777777777543322222221 1457889999988875
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=4.2e-24 Score=256.82 Aligned_cols=266 Identities=18% Similarity=0.102 Sum_probs=138.6
Q ss_pred CCCCcceecccccccCCCCcchhHHHHhhhcCceeEEEEeCCCCcc-ccCccccCCCCC-------------ceeeccCc
Q 042296 539 DTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFSLCGYQIS-ELPNSVGDLRYL-------------RYLNLSRT 604 (1446)
Q Consensus 539 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------r~L~L~~~ 604 (1446)
+...||.+..... .+ +.+|+.+.++++|++|++++|.+. .+|.+++++.+| ++|++++|
T Consensus 9 ~~~~L~~L~l~~n------~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 9 SNTFLQEPLRHSS------NL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccchhhhcccC------ch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 3567777755442 33 688989999999999999999987 789999999886 77777777
Q ss_pred cccccCcccccccccceeeccCccccccccccccCcccceeecccCCCcccccCCcccccccccccCceEecCCCCCChh
Q 042296 605 CIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQ 684 (1446)
Q Consensus 605 ~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~ 684 (1446)
.++.+|.. .++|++|++++| .+..+|.. +++|++|++++|. +..+|... +
T Consensus 82 ~l~~lp~~---~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~------------------- 131 (454)
T 1jl5_A 82 GLSSLPEL---PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---P------------------- 131 (454)
T ss_dssp CCSCCCSC---CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---T-------------------
T ss_pred ccccCCCC---cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCc-cCcccCCC---C-------------------
Confidence 77766652 356777777776 35556643 3567777777665 44443211 2
Q ss_pred hhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEecc
Q 042296 685 DLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGY 764 (1446)
Q Consensus 685 ~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 764 (1446)
+|+.|++++|.... + +.+..+++|+.|++++|
T Consensus 132 -----------------------------------~L~~L~L~~n~l~~------------l-p~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 132 -----------------------------------LLEYLGVSNNQLEK------------L-PELQNSSFLKIIDVDNN 163 (454)
T ss_dssp -----------------------------------TCCEEECCSSCCSS------------C-CCCTTCTTCCEEECCSS
T ss_pred -----------------------------------CCCEEECcCCCCCC------------C-cccCCCCCCCEEECCCC
Confidence 33344443332211 0 12444555666666666
Q ss_pred CCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceeecccccceeEeCccccCCCCCCCCCCcceeecccccc
Q 042296 765 GGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQE 844 (1446)
Q Consensus 765 ~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~ 844 (1446)
....+|.+ ..+|+.|++++|...+ +|.++.+++|++|++++|... .++ ...++|+.|++.++ .
T Consensus 164 ~l~~lp~~-----~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~-~l~---------~~~~~L~~L~l~~n-~ 226 (454)
T 1jl5_A 164 SLKKLPDL-----PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLK-KLP---------DLPLSLESIVAGNN-I 226 (454)
T ss_dssp CCSCCCCC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-SCC---------CCCTTCCEEECCSS-C
T ss_pred cCcccCCC-----cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCC-cCC---------CCcCcccEEECcCC-c
Confidence 55555543 2356666666665443 556666666666666655321 111 11345666666653 2
Q ss_pred ccccccccccCccccCCcccEEEecCCCCCcCCCCCCCCCccEEEEeccCChhhcCCCCCcccEEEEeccc
Q 042296 845 WEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPERLPSLEILVIQSCEELLVSIRRLPALCKFEISGCK 915 (1446)
Q Consensus 845 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~ 915 (1446)
+..+ + .+.. +++|+.|++++| .++ .+|..+++|+.|++++|.... .-..+++|+.|++++|.
T Consensus 227 l~~l-p-~~~~----l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 227 LEEL-P-ELQN----LPFLTTIYADNN-LLK-TLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENI 288 (454)
T ss_dssp CSSC-C-CCTT----CTTCCEEECCSS-CCS-SCCSCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred CCcc-c-ccCC----CCCCCEEECCCC-cCC-cccccccccCEEECCCCcccc-cCcccCcCCEEECcCCc
Confidence 3322 1 1222 677777777776 555 466666677777776665221 00123566667666654
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.1e-23 Score=263.55 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCCceeeccCccccccCcccccccccceeeccCcccccccc-ccccCcccceeecccCCCccccc-CCccccccccccc
Q 042296 594 RYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHHLNNSTTNSLEEM-PRGIGKLTFLQTL 670 (1446)
Q Consensus 594 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L 670 (1446)
...+++++++|+++.+|..+. ++|++|++++|. +..+| ..|.++++|++|++++|. +..+ |..++++++|++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEE
Confidence 445999999999999998765 899999999985 55654 689999999999999997 5555 4445555555555
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=6.3e-22 Score=241.02 Aligned_cols=188 Identities=21% Similarity=0.273 Sum_probs=113.7
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
.+++|+.|+++++.+..+|. +..+++|++|+|++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 34567777787777777764 6777788888888888777766 777888888888876 3555555 777888888888
Q ss_pred cCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEe
Q 042296 649 STTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQW 728 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 728 (1446)
++|. +..+|. ++++++|++|..... .+..+ ..+..+++|+.|++..
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n------------------------~l~~~--------~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSN------------------------TISDI--------SALSGLTSLQQLSFGN 165 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEE------------------------EECCC--------GGGTTCTTCSEEEEEE
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCC------------------------ccCCC--------hhhccCCcccEeecCC
Confidence 7776 566654 666666666622211 11110 0244555666666642
Q ss_pred eeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceee
Q 042296 729 TCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLE 808 (1446)
Q Consensus 729 n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 808 (1446)
+ ... ...+..+++|+.|++++|....++. +.. +++|+.|++++|...+..| ++.+++|+.|+
T Consensus 166 ~-~~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~-l~~--l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 227 (466)
T 1o6v_A 166 Q-VTD-------------LKPLANLTTLERLDISSNKVSDISV-LAK--LTNLESLIATNNQISDITP-LGILTNLDELS 227 (466)
T ss_dssp S-CCC-------------CGGGTTCTTCCEEECCSSCCCCCGG-GGG--CTTCSEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred c-ccC-------------chhhccCCCCCEEECcCCcCCCChh-hcc--CCCCCEEEecCCccccccc-ccccCCCCEEE
Confidence 1 110 1124555666666666666555432 222 5666666666665443322 55566666666
Q ss_pred cccc
Q 042296 809 VCRM 812 (1446)
Q Consensus 809 L~~~ 812 (1446)
+++|
T Consensus 228 l~~n 231 (466)
T 1o6v_A 228 LNGN 231 (466)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6554
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=9.7e-22 Score=236.43 Aligned_cols=354 Identities=17% Similarity=0.143 Sum_probs=218.6
Q ss_pred hhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCccccee
Q 042296 566 RLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHH 645 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 645 (1446)
.+.++++|++|++++|.++.+| .++.+++|++|+|++|.++.+| ++.+++|++|++++|. +..+| ++++++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCE
Confidence 3457889999999999999887 6899999999999999999886 8999999999999984 66665 889999999
Q ss_pred ecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEE
Q 042296 646 LNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLL 725 (1446)
Q Consensus 646 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 725 (1446)
|++++|. +..+| ++.+++|++|.
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~------------------------------------------------------ 133 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLN------------------------------------------------------ 133 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEE------------------------------------------------------
T ss_pred EECCCCc-CCeec--CCCCCcCCEEE------------------------------------------------------
Confidence 9999997 66665 66777666662
Q ss_pred EEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccC-CCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCcc
Q 042296 726 LQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYG-GTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSL 804 (1446)
Q Consensus 726 l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 804 (1446)
++.|..... .+..+++|+.|++++|. ...++ +. .+++|+.|++++|...+ +| ++.+++|
T Consensus 134 l~~N~l~~l--------------~l~~l~~L~~L~l~~n~~~~~~~--~~--~l~~L~~L~ls~n~l~~-l~-l~~l~~L 193 (457)
T 3bz5_A 134 CARNTLTEI--------------DVSHNTQLTELDCHLNKKITKLD--VT--PQTQLTTLDCSFNKITE-LD-VSQNKLL 193 (457)
T ss_dssp CTTSCCSCC--------------CCTTCTTCCEEECTTCSCCCCCC--CT--TCTTCCEEECCSSCCCC-CC-CTTCTTC
T ss_pred CCCCcccee--------------ccccCCcCCEEECCCCCcccccc--cc--cCCcCCEEECCCCccce-ec-cccCCCC
Confidence 111111100 12334455666666552 33332 22 27889999999987655 55 7888899
Q ss_pred ceeecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCCCCCC
Q 042296 805 KHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPERLPS 884 (1446)
Q Consensus 805 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~ 884 (1446)
+.|++++|... .++ ...+++|+.|++.+. .++++ + +.. +++|+.|++++| .+++..+..+++
T Consensus 194 ~~L~l~~N~l~-~~~--------l~~l~~L~~L~Ls~N-~l~~i-p--~~~----l~~L~~L~l~~N-~l~~~~~~~l~~ 255 (457)
T 3bz5_A 194 NRLNCDTNNIT-KLD--------LNQNIQLTFLDCSSN-KLTEI-D--VTP----LTQLTYFDCSVN-PLTELDVSTLSK 255 (457)
T ss_dssp CEEECCSSCCS-CCC--------CTTCTTCSEEECCSS-CCSCC-C--CTT----CTTCSEEECCSS-CCSCCCCTTCTT
T ss_pred CEEECcCCcCC-eec--------cccCCCCCEEECcCC-ccccc-C--ccc----cCCCCEEEeeCC-cCCCcCHHHCCC
Confidence 99999876432 221 122666777766663 33332 1 211 666777777666 455333345555
Q ss_pred ccEEEEeccCChhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCCCcceeeecccccc
Q 042296 885 LEILVIQSCEELLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEELEIANIDEL 964 (1446)
Q Consensus 885 L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~~l 964 (1446)
|+.|+++++ +|+.|++++|..... -....+++|+.|++++|..+
T Consensus 256 L~~L~l~~n-----------~L~~L~l~~n~~~~~-------------------------~~~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 256 LTTLHCIQT-----------DLLEIDLTHNTQLIY-------------------------FQAEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp CCEEECTTC-----------CCSCCCCTTCTTCCE-------------------------EECTTCTTCCCCCCTTCTTC
T ss_pred CCEEeccCC-----------CCCEEECCCCccCCc-------------------------ccccccccCCEEECCCCccc
Confidence 555554432 234444444432211 11124677788888777655
Q ss_pred hhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccccCCcccEEEeccCC
Q 042296 965 TYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCS 1044 (1446)
Q Consensus 965 ~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~ 1044 (1446)
..++. ..+.|+.+++++ .++|+.|++++| .++.++ +..+++|+.|++++|
T Consensus 300 ~~l~~-------~~~~L~~L~l~~------------------~~~L~~L~L~~N-~l~~l~---l~~l~~L~~L~l~~N- 349 (457)
T 3bz5_A 300 YLLDC-------QAAGITELDLSQ------------------NPKLVYLYLNNT-ELTELD---VSHNTKLKSLSCVNA- 349 (457)
T ss_dssp CEEEC-------TTCCCSCCCCTT------------------CTTCCEEECTTC-CCSCCC---CTTCTTCSEEECCSS-
T ss_pred ceecc-------CCCcceEechhh------------------cccCCEEECCCC-cccccc---cccCCcCcEEECCCC-
Confidence 44331 234444444443 357788888888 455553 677888888888885
Q ss_pred CCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCCcccc
Q 042296 1045 SLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYIT 1099 (1446)
Q Consensus 1045 ~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l~~~~ 1099 (1446)
.+..++ .|..|.+++|...+. + ....|..+++++|...+.+|
T Consensus 350 ~l~~l~------~L~~L~l~~n~l~g~-~------~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 350 HIQDFS------SVGKIPALNNNFEAE-G------QTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CCCBCT------TGGGSSGGGTSEEEE-E------EEEECCCBCCBTTBEEEECC
T ss_pred CCCCcc------ccccccccCCcEEec-c------eeeecCccccccCcEEEEcC
Confidence 454443 344444444432221 1 11225556666666555444
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=9.9e-22 Score=239.29 Aligned_cols=191 Identities=20% Similarity=0.266 Sum_probs=150.1
Q ss_pred hhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceee
Q 042296 567 LLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHL 646 (1446)
Q Consensus 567 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 646 (1446)
+..+++|++|+|++|.++.+|. ++++++|++|++++|.+..+|. ++++++|++|++++| .+..+|. +.++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEE
Confidence 5578899999999999999876 9999999999999999998887 999999999999998 5777765 9999999999
Q ss_pred cccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEE
Q 042296 647 NNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLL 726 (1446)
Q Consensus 647 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 726 (1446)
++++|. +..+| .++.+++|+.|... .. .. .. ..+.++++|+.|++
T Consensus 140 ~l~~n~-l~~~~-~~~~l~~L~~L~l~-~~---------------------------~~---~~--~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 140 ELSSNT-ISDIS-ALSGLTSLQQLSFG-NQ---------------------------VT---DL--KPLANLTTLERLDI 184 (466)
T ss_dssp EEEEEE-ECCCG-GGTTCTTCSEEEEE-ES---------------------------CC---CC--GGGTTCTTCCEEEC
T ss_pred ECCCCc-cCCCh-hhccCCcccEeecC-Cc---------------------------cc---Cc--hhhccCCCCCEEEC
Confidence 999997 66666 48888888888321 10 00 00 12667788999999
Q ss_pred EeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccce
Q 042296 727 QWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKH 806 (1446)
Q Consensus 727 ~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 806 (1446)
++|..... ..+..+++|+.|++++|....++. +. .+++|+.|++++|.... ++.+..+++|+.
T Consensus 185 ~~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~ 247 (466)
T 1o6v_A 185 SSNKVSDI-------------SVLAKLTNLESLIATNNQISDITP-LG--ILTNLDELSLNGNQLKD-IGTLASLTNLTD 247 (466)
T ss_dssp CSSCCCCC-------------GGGGGCTTCSEEECCSSCCCCCGG-GG--GCTTCCEEECCSSCCCC-CGGGGGCTTCSE
T ss_pred cCCcCCCC-------------hhhccCCCCCEEEecCCccccccc-cc--ccCCCCEEECCCCCccc-chhhhcCCCCCE
Confidence 87654321 235677899999999998777654 33 38899999999997543 566778888888
Q ss_pred eeccccc
Q 042296 807 LEVCRMN 813 (1446)
Q Consensus 807 L~L~~~~ 813 (1446)
|++++|.
T Consensus 248 L~l~~n~ 254 (466)
T 1o6v_A 248 LDLANNQ 254 (466)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 8888764
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=4.9e-21 Score=233.50 Aligned_cols=100 Identities=22% Similarity=0.249 Sum_probs=56.0
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCcccc-cc-CcccccccccceeeccCccccccccccccCcccceeec
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIE-IL-PDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 647 (1446)
++|++|+|++|.++.+ |..|+++++|++|+|++|.+. .+ |..|.++++|++|++++|......|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4566666666666655 555666666666666666654 33 34566666666666666543333355566666666666
Q ss_pred ccCCCcccccCCc--cccccccccc
Q 042296 648 NSTTNSLEEMPRG--IGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~~--i~~L~~L~~L 670 (1446)
+++|.....+|.. ++++++|++|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred CCCCCCCccccCcccccCcccCCEE
Confidence 6666522222322 4445555444
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=2.7e-21 Score=232.53 Aligned_cols=282 Identities=18% Similarity=0.153 Sum_probs=176.7
Q ss_pred ccCCCCcceecccccccCCCCcchhHHHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccc
Q 042296 537 FDDTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKL 616 (1446)
Q Consensus 537 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L 616 (1446)
+.++++|+.|.+.+.. +. .+| .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++++
T Consensus 38 ~~~l~~L~~L~Ls~n~------l~-~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS------IT-DMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp HHHHTTCCEEECCSSC------CC-CCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred hhHcCCCCEEEccCCC------cc-cCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCC
Confidence 4456677777554432 11 223 5668899999999999998886 889999999999999999886 8899
Q ss_pred cccceeeccCccccccccccccCcccceeecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCee
Q 042296 617 YNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTL 696 (1446)
Q Consensus 617 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 696 (1446)
++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++++++|++|.........
T Consensus 106 ~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~----------------- 162 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT----------------- 162 (457)
T ss_dssp TTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC-----------------
T ss_pred CcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc-----------------
Confidence 99999999998 466675 8899999999999987 66664 7788888877322111000
Q ss_pred EEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcC
Q 042296 697 KISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDS 776 (1446)
Q Consensus 697 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 776 (1446)
.. .+..+++|+.|++++|..... + +..+++|+.|++++|....++ +..
T Consensus 163 ------------~~---~~~~l~~L~~L~ls~n~l~~l-------------~-l~~l~~L~~L~l~~N~l~~~~--l~~- 210 (457)
T 3bz5_A 163 ------------KL---DVTPQTQLTTLDCSFNKITEL-------------D-VSQNKLLNRLNCDTNNITKLD--LNQ- 210 (457)
T ss_dssp ------------CC---CCTTCTTCCEEECCSSCCCCC-------------C-CTTCTTCCEEECCSSCCSCCC--CTT-
T ss_pred ------------cc---ccccCCcCCEEECCCCcccee-------------c-cccCCCCCEEECcCCcCCeec--ccc-
Confidence 00 144556677777766544321 1 445667777777777766553 322
Q ss_pred ccCCceEEEeeCCCCCCCCCCCCCcCccceeecccccceeEeCccccCCCCCCCCCCcceeecc----------cccccc
Q 042296 777 YFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFE----------DMQEWE 846 (1446)
Q Consensus 777 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~----------~~~~l~ 846 (1446)
+++|+.|++++|...+ +| ++.+++|+.|++++|.... ++ ...+++|+.|.+. ++....
T Consensus 211 -l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~-~~--------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 211 -NIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTE-LD--------VSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp -CTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSC-CC--------CTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred -CCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCC-cC--------HHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 6777777777776554 45 6677777777777654222 11 1225555554433 322111
Q ss_pred ccccccccCccccCCcccEEEecCCCCCcCCCCCCCCCccEEEEeccCChhhcCCCCCcccEEEEeccc
Q 042296 847 DWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPERLPSLEILVIQSCEELLVSIRRLPALCKFEISGCK 915 (1446)
Q Consensus 847 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~ 915 (1446)
.+ + . ..+++|+.|++++|+.+. .+|...++|+.|+++ .+++|+.|++++|.
T Consensus 279 ~~-~--~----~~l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~----------~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 279 YF-Q--A----EGCRKIKELDVTHNTQLY-LLDCQAAGITELDLS----------QNPKLVYLYLNNTE 329 (457)
T ss_dssp EE-E--C----TTCTTCCCCCCTTCTTCC-EEECTTCCCSCCCCT----------TCTTCCEEECTTCC
T ss_pred cc-c--c----cccccCCEEECCCCcccc-eeccCCCcceEechh----------hcccCCEEECCCCc
Confidence 11 1 0 115666666666664432 555545555555433 33566666666654
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=1.1e-20 Score=220.98 Aligned_cols=96 Identities=21% Similarity=0.401 Sum_probs=72.2
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
.+++|+.|+++++.+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEEC
Confidence 56677888888888877764 7778888888888888887776 788888888888887 466665 4788888888888
Q ss_pred cCCCcccccCCccccccccccc
Q 042296 649 STTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
++|. +..+|. ++.+++|++|
T Consensus 118 ~~n~-i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 118 NEDN-ISDISP-LANLTKMYSL 137 (347)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEE
T ss_pred cCCc-ccCchh-hccCCceeEE
Confidence 8876 565554 5666666655
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=5e-20 Score=224.62 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=57.1
Q ss_pred CCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCCCCCCcccccc
Q 042296 1181 NLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPEGGLPSANLTK 1260 (1446)
Q Consensus 1181 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~ 1260 (1446)
..+++|+.|++++|...+..|..+.++++|+.|++++|......|..+..+++|++|++++|...+..|..+..+++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 33445555555555544444555555666666666665544444555556666666666665322223445555556666
Q ss_pred eecccccCcccccc----cCCccceEeeCCCCC
Q 042296 1261 LQITWCDKLEALPE----GMNSLRELNIGGLAS 1289 (1446)
Q Consensus 1261 L~l~~c~~l~~lp~----~l~~L~~L~l~~c~~ 1289 (1446)
|++++| .++.+|. .+++|++|++++|+-
T Consensus 376 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 376 LALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 666653 2333332 345666666665543
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=1.9e-20 Score=222.52 Aligned_cols=300 Identities=18% Similarity=0.124 Sum_probs=218.1
Q ss_pred CCCCcceecccccccCCCCcchhHHHHhhh-cCceeEEEEeCCCCccccC-ccccCCCCCceeeccCccccccC-ccccc
Q 042296 539 DTEHLRTFLPVMLSNCWGGYLAYSILQRLL-KLHRLKVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEILP-DSINK 615 (1446)
Q Consensus 539 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~ 615 (1446)
.+++++.+.+.+.. ...+|..++ .+++|++|++++|.++.+| ..|..+++|++|+|++|.++.+| ..+++
T Consensus 43 ~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 45677777554432 345666655 8999999999999998885 58999999999999999999775 56899
Q ss_pred ccccceeeccCcccccccccc-ccCcccceeecccCCCcccccC-CcccccccccccCceEecCCCCCChhhhhhhhccc
Q 042296 616 LYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNSTTNSLEEMP-RGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLR 693 (1446)
Q Consensus 616 L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~ 693 (1446)
+++|++|++++| .+..+|.. +.++++|++|++++|. +..++ ..++++++|++|......
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~----------------- 176 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR----------------- 176 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-----------------
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-----------------
Confidence 999999999998 57788876 5899999999999998 55654 458888888888322111
Q ss_pred CeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCccc
Q 042296 694 GTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWL 773 (1446)
Q Consensus 694 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 773 (1446)
.... .+..+++|+.|++++|... .+..+++|+.|++++|....+|...
T Consensus 177 -------------l~~~---~~~~l~~L~~L~l~~n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 177 -------------LTHV---DLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp -------------CSBC---CGGGCTTCSEEECCSSCCS----------------EEECCSSCSEEECCSSCCCEEECCC
T ss_pred -------------CCcc---ccccccccceeeccccccc----------------ccCCCCcceEEECCCCeeeeccccc
Confidence 0000 1344567777777765332 2334567888888888877776543
Q ss_pred CcCccCCceEEEeeCCCCCCCCCCCCCcCccceeecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccc
Q 042296 774 GDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGF 853 (1446)
Q Consensus 774 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 853 (1446)
+++|+.|++++|...+ .+.++.+++|++|++++|......+..+.+ +++|+.|.+.+. .++.+. ..+
T Consensus 225 ----~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n-~l~~~~-~~~ 291 (390)
T 3o6n_A 225 ----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNN-RLVALN-LYG 291 (390)
T ss_dssp ----CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECCSS-CCCEEE-CSS
T ss_pred ----cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccc------cccCCEEECCCC-cCcccC-ccc
Confidence 5788999998887654 467888889999999887654444444322 788888888873 344432 111
Q ss_pred cCccccCCcccEEEecCCCCCcCCCCC---CCCCccEEEEeccCChhhcCCCCCcccEEEEeccc
Q 042296 854 DQEAEVFPNLRELHLLRCSKLQGTFPE---RLPSLEILVIQSCEELLVSIRRLPALCKFEISGCK 915 (1446)
Q Consensus 854 ~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~ 915 (1446)
. .+++|+.|++++| .+. .+|. .+++|+.|++++|......+..+++|+.|++++|+
T Consensus 292 ~----~l~~L~~L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 292 Q----PIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp S----CCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred C----CCCCCCEEECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 1 2789999999998 665 5664 46889999999988655567888999999998876
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=222.35 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=40.9
Q ss_pred eeEEEEeCCCCcccc-CccccCCCCCceeeccCcccccc-CcccccccccceeeccCcccccccccc-ccCcccceeecc
Q 042296 572 RLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNN 648 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l 648 (1446)
.+++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..|+++++|++|+|++| .+..+|.. |.++++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEEC
Confidence 445555555555544 34455555555555555555544 445555555555555554 24444432 455555555555
Q ss_pred cCCC
Q 042296 649 STTN 652 (1446)
Q Consensus 649 ~~~~ 652 (1446)
++|.
T Consensus 112 s~n~ 115 (477)
T 2id5_A 112 SENK 115 (477)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 5554
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=6.6e-20 Score=210.70 Aligned_cols=189 Identities=20% Similarity=0.278 Sum_probs=145.7
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
....+++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 568899999999999999999999999999999999999999999999999999999984 6799999999999999999
Q ss_pred cCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEe
Q 042296 649 STTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQW 728 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 728 (1446)
++|...+.+|..++.... ...+.++++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~~---------------------------------------------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTDA---------------------------------------------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhccc---------------------------------------------hhhhccCCCCCEEECcC
Confidence 998878888876544110 01134556777777777
Q ss_pred eeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCcccee
Q 042296 729 TCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHL 807 (1446)
Q Consensus 729 n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 807 (1446)
|.... ++..+..+++|+.|++++|....+|..+.. +++|+.|++++|...+.+| .++.+++|++|
T Consensus 193 n~l~~------------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 193 TGIRS------------LPASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ECCCC------------CCGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCcCc------------chHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 64431 223355566777777777777777766654 6777777777777666666 56777777777
Q ss_pred ecccccceeE
Q 042296 808 EVCRMNRVKS 817 (1446)
Q Consensus 808 ~L~~~~~l~~ 817 (1446)
++++|+..+.
T Consensus 259 ~L~~n~~~~~ 268 (328)
T 4fcg_A 259 ILKDCSNLLT 268 (328)
T ss_dssp ECTTCTTCCB
T ss_pred ECCCCCchhh
Confidence 7776654443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.9e-20 Score=233.48 Aligned_cols=299 Identities=18% Similarity=0.122 Sum_probs=216.0
Q ss_pred CCCcceecccccccCCCCcchhHHHHhhh-cCceeEEEEeCCCCccccC-ccccCCCCCceeeccCccccccCc-ccccc
Q 042296 540 TEHLRTFLPVMLSNCWGGYLAYSILQRLL-KLHRLKVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEILPD-SINKL 616 (1446)
Q Consensus 540 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L 616 (1446)
+.+++.+.+.+. ....+|+.++ .+++|++|+|++|.++.+| ..|+.+++|++|+|++|.++.+|. .|+++
T Consensus 50 l~~l~~l~l~~~-------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNS-------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSC-------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCceEEEeeCC-------CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 456666644332 2345666666 8999999999999999874 589999999999999999998765 57999
Q ss_pred cccceeeccCcccccccccc-ccCcccceeecccCCCcccccC-CcccccccccccCceEecCCCCCChhhhhhhhcccC
Q 042296 617 YNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNSTTNSLEEMP-RGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRG 694 (1446)
Q Consensus 617 ~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~ 694 (1446)
++|++|+|++| .+..+|.. |+++++|++|++++|. +..+| ..++.+++|++|....+. +
T Consensus 123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~------l----------- 183 (597)
T 3oja_B 123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR------L----------- 183 (597)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC------C-----------
T ss_pred CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC------C-----------
Confidence 99999999998 57788776 5899999999999998 55554 468899999988322110 0
Q ss_pred eeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccC
Q 042296 695 TLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLG 774 (1446)
Q Consensus 695 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 774 (1446)
... .+..+++|+.|++++|... .+..+++|+.|++++|....+|..+
T Consensus 184 -------------~~~---~~~~l~~L~~L~l~~n~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~- 230 (597)
T 3oja_B 184 -------------THV---DLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV- 230 (597)
T ss_dssp -------------SBC---CGGGCTTCSEEECCSSCCS----------------EEECCTTCSEEECCSSCCCEEECSC-
T ss_pred -------------CCc---ChhhhhhhhhhhcccCccc----------------cccCCchhheeeccCCccccccccc-
Confidence 000 1334567777777665332 2334567888888888877766544
Q ss_pred cCccCCceEEEeeCCCCCCCCCCCCCcCccceeecccccceeEeCccccCCCCCCCCCCcceeecccccccccccccccc
Q 042296 775 DSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFD 854 (1446)
Q Consensus 775 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 854 (1446)
.++|+.|+|++|...+ .+.++.+++|+.|++++|......+..+.+ +++|+.|.+.++ .+..+. ..+.
T Consensus 231 ---~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N-~l~~l~-~~~~ 298 (597)
T 3oja_B 231 ---NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNN-RLVALN-LYGQ 298 (597)
T ss_dssp ---CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECTTS-CCCEEE-CSSS
T ss_pred ---CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcC------ccCCCEEECCCC-CCCCCC-cccc
Confidence 4678888888887654 467888888888888887655544444422 788888888873 444432 2221
Q ss_pred CccccCCcccEEEecCCCCCcCCCCC---CCCCccEEEEeccCChhhcCCCCCcccEEEEeccc
Q 042296 855 QEAEVFPNLRELHLLRCSKLQGTFPE---RLPSLEILVIQSCEELLVSIRRLPALCKFEISGCK 915 (1446)
Q Consensus 855 ~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~ 915 (1446)
.+++|+.|++++| .+. .+|. .+++|+.|++++|......+..+++|+.|++++|+
T Consensus 299 ----~l~~L~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 299 ----PIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ----CCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred ----cCCCCcEEECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 2789999999988 565 5664 46788999999888665567788899999998876
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=218.37 Aligned_cols=294 Identities=17% Similarity=0.150 Sum_probs=194.4
Q ss_pred CCcceecccccccCCCCcchhHHHHhhhcCceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccCc-ccccccc
Q 042296 541 EHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILPD-SINKLYN 618 (1446)
Q Consensus 541 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~ 618 (1446)
++++.|.+.++. +....+..+.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|. .|.++++
T Consensus 32 ~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNR------IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCCCc------cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 467777554432 2222234455899999999999999877 7889999999999999999998886 4789999
Q ss_pred cceeeccCccccccccccccCcccceeecccCCCccccc-CCcccccccccccCceEecCCCCCChhhhhhhhcccCeeE
Q 042296 619 LHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEM-PRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLK 697 (1446)
Q Consensus 619 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~ 697 (1446)
|++|+|++|......|..|.++++|++|++++|. +..+ |..++.+++|++|.....
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n---------------------- 162 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC---------------------- 162 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC----------------------
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC----------------------
Confidence 9999999986555557779999999999999998 5544 456888888887722111
Q ss_pred EeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccC-CCCCCcccCcC
Q 042296 698 ISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYG-GTKFPIWLGDS 776 (1446)
Q Consensus 698 i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~ 776 (1446)
.........+..+++|+.|+++.|..... ....+..+++|+.|+++++. ...+|.....
T Consensus 163 --------~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-----------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~- 222 (477)
T 2id5_A 163 --------NLTSIPTEALSHLHGLIVLRLRHLNINAI-----------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY- 222 (477)
T ss_dssp --------CCSSCCHHHHTTCTTCCEEEEESCCCCEE-----------CTTCSCSCTTCCEEEEECCTTCCEECTTTTT-
T ss_pred --------cCcccChhHhcccCCCcEEeCCCCcCcEe-----------ChhhcccCcccceeeCCCCccccccCccccc-
Confidence 11222234467778889998887654321 12346677888888888865 4445554443
Q ss_pred ccCCceEEEeeCCCCCCCCC--CCCCcCccceeecccccceeEeCccccCCCCCCCCCCcceeecccccccccccccccc
Q 042296 777 YFSNLVTLKFQNCHKCTSLP--SIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFD 854 (1446)
Q Consensus 777 ~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 854 (1446)
..+|+.|++++|... .+| .+..+++|+.|++++|.. ..++...+. .+++|+.|.+.+. .+....+..+.
T Consensus 223 -~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~-----~l~~L~~L~L~~n-~l~~~~~~~~~ 293 (477)
T 2id5_A 223 -GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLH-----ELLRLQEIQLVGG-QLAVVEPYAFR 293 (477)
T ss_dssp -TCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCC-CEECTTSCT-----TCTTCCEEECCSS-CCSEECTTTBT
T ss_pred -CccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcC-CccChhhcc-----ccccCCEEECCCC-ccceECHHHhc
Confidence 458888888888755 344 577888888888887653 333322222 2556666666552 33333333332
Q ss_pred CccccCCcccEEEecCCCCCcCCCCCCCCCccEEEEeccCChhhcCCCCCcccEEEEeccc
Q 042296 855 QEAEVFPNLRELHLLRCSKLQGTFPERLPSLEILVIQSCEELLVSIRRLPALCKFEISGCK 915 (1446)
Q Consensus 855 ~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~ 915 (1446)
. +++|+.|++++| .++ .+| +..+..+++|+.|++++|+
T Consensus 294 ~----l~~L~~L~L~~N-~l~-~~~-----------------~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 294 G----LNYLRVLNVSGN-QLT-TLE-----------------ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp T----CTTCCEEECCSS-CCS-CCC-----------------GGGBSCGGGCCEEECCSSC
T ss_pred C----cccCCEEECCCC-cCc-eeC-----------------HhHcCCCcccCEEEccCCC
Confidence 2 555666666655 443 222 2245566777777777765
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.2e-19 Score=212.08 Aligned_cols=279 Identities=19% Similarity=0.230 Sum_probs=163.4
Q ss_pred hhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceee
Q 042296 567 LLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHL 646 (1446)
Q Consensus 567 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 646 (1446)
+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+.++++|++|++++| .+..+|. +..+++|++|
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSL 137 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEE
Confidence 4467778888888887777765 777788888888888777765 4777888888888876 3566655 7777888888
Q ss_pred cccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEE
Q 042296 647 NNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLL 726 (1446)
Q Consensus 647 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 726 (1446)
++++|.....++ .++.+++|++|........ .+. .+..+++|+.|++
T Consensus 138 ~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~---~~~-----------------------------~~~~l~~L~~L~l 184 (347)
T 4fmz_A 138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVK---DVT-----------------------------PIANLTDLYSLSL 184 (347)
T ss_dssp ECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC---CCG-----------------------------GGGGCTTCSEEEC
T ss_pred ECCCCCCccccc-chhhCCCCcEEEecCCCcC---Cch-----------------------------hhccCCCCCEEEc
Confidence 888776444433 3667777776632111100 000 0334455555655
Q ss_pred EeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccce
Q 042296 727 QWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKH 806 (1446)
Q Consensus 727 ~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 806 (1446)
++|..... ..+..+++|+.|+++++....++. +. .+++|+.|++++|.... ++.+..+++|++
T Consensus 185 ~~n~l~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~-~~--~~~~L~~L~l~~n~l~~-~~~~~~l~~L~~ 247 (347)
T 4fmz_A 185 NYNQIEDI-------------SPLASLTSLHYFTAYVNQITDITP-VA--NMTRLNSLKIGNNKITD-LSPLANLSQLTW 247 (347)
T ss_dssp TTSCCCCC-------------GGGGGCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECCSSCCCC-CGGGTTCTTCCE
T ss_pred cCCccccc-------------ccccCCCccceeecccCCCCCCch-hh--cCCcCCEEEccCCccCC-CcchhcCCCCCE
Confidence 54432211 113445566666666665555443 22 25666666666665433 233566666666
Q ss_pred eecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCC---CCCC
Q 042296 807 LEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFP---ERLP 883 (1446)
Q Consensus 807 L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~ 883 (1446)
|++++|.. ..++ .+ ..+++|+.|.+.++ .+..+ ..+.. +++|+.|++++| .+.+..| ..++
T Consensus 248 L~l~~n~l-~~~~-~~------~~l~~L~~L~l~~n-~l~~~--~~~~~----l~~L~~L~L~~n-~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 248 LEIGTNQI-SDIN-AV------KDLTKLKMLNVGSN-QISDI--SVLNN----LSQLNSLFLNNN-QLGNEDMEVIGGLT 311 (347)
T ss_dssp EECCSSCC-CCCG-GG------TTCTTCCEEECCSS-CCCCC--GGGGG----CTTCSEEECCSS-CCCGGGHHHHHTCT
T ss_pred EECCCCcc-CCCh-hH------hcCCCcCEEEccCC-ccCCC--hhhcC----CCCCCEEECcCC-cCCCcChhHhhccc
Confidence 66665532 2221 11 22566666666653 23332 11111 677788888777 4443333 2567
Q ss_pred CccEEEEeccCCh-hhcCCCCCcccEEEEeccc
Q 042296 884 SLEILVIQSCEEL-LVSIRRLPALCKFEISGCK 915 (1446)
Q Consensus 884 ~L~~L~l~~~~~l-~~~l~~l~~L~~L~l~~~~ 915 (1446)
+|+.|++++|+.. ...+..+++|+.|++++|.
T Consensus 312 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred cCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 7788888777632 1126778888888888875
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=5.5e-19 Score=221.82 Aligned_cols=100 Identities=22% Similarity=0.298 Sum_probs=81.9
Q ss_pred cCceeEEEEeCCCCccccCcc-ccCCCCCceeeccCccccccCc-ccccccccceeeccCcccccccc-ccccCccccee
Q 042296 569 KLHRLKVFSLCGYQISELPNS-VGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHH 645 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~ 645 (1446)
.+..+++|+++++.+..+|.. +.++++|++|+|++|.++.+|. .|+++++|++|+|++|. +..+| ..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 567889999999999999765 6789999999999999997764 89999999999999985 55554 55799999999
Q ss_pred ecccCCCcccccCCc-cccccccccc
Q 042296 646 LNNSTTNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 646 L~l~~~~~~~~~p~~-i~~L~~L~~L 670 (1446)
|++++|. +..+|.. ++++++|++|
T Consensus 128 L~L~~n~-l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 128 LVLERND-LSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred EEeeCCC-CCCCCHHHhccCCCCCEE
Confidence 9999997 7777765 3566655555
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=3.9e-19 Score=211.23 Aligned_cols=302 Identities=15% Similarity=0.117 Sum_probs=217.1
Q ss_pred ccceEEEeecCCCccccccccccCCCCcceecccccccCCCCcchhHHHH-hhhcCceeEEEEeCCCCcccc-CccccCC
Q 042296 516 KSLRHLSYIPGGHDGVKRFADFDDTEHLRTFLPVMLSNCWGGYLAYSILQ-RLLKLHRLKVFSLCGYQISEL-PNSVGDL 593 (1446)
Q Consensus 516 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L 593 (1446)
..+|++.+.......+. ...+..+++|+.|.+.+.. + ..+++ .+..+++|++|++++|.++.+ |..|+++
T Consensus 45 ~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n~------i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQ------I-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTSC------C-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCceEEEecCCchhhCC-hhHhcccccCcEEECCCCc------c-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 45677777654332221 1125678899998665432 2 22333 455899999999999999988 5668999
Q ss_pred CCCceeeccCccccccCcc-cccccccceeeccCccccccc-cccccCcccceeecccCCCcccccCCcccccccccccC
Q 042296 594 RYLRYLNLSRTCIEILPDS-INKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLC 671 (1446)
Q Consensus 594 ~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 671 (1446)
++|++|+|++|.++.+|.. ++++++|++|++++|. +..+ |..+.++++|++|++++|. +..++ ++.+++|+.|.
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~ 192 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHAN 192 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEE
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceee
Confidence 9999999999999999876 5899999999999985 5555 5669999999999999998 66654 56677777662
Q ss_pred ceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCC
Q 042296 672 NFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLR 751 (1446)
Q Consensus 672 ~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~ 751 (1446)
.... .+. .+....+|+.|++++|.....+ ..
T Consensus 193 l~~n------~l~-----------------------------~~~~~~~L~~L~l~~n~l~~~~--------------~~ 223 (390)
T 3o6n_A 193 VSYN------LLS-----------------------------TLAIPIAVEELDASHNSINVVR--------------GP 223 (390)
T ss_dssp CCSS------CCS-----------------------------EEECCSSCSEEECCSSCCCEEE--------------CC
T ss_pred cccc------ccc-----------------------------ccCCCCcceEEECCCCeeeecc--------------cc
Confidence 2110 000 1223357888888776443211 12
Q ss_pred CCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeecccccceeEeCccccCCCCCCC
Q 042296 752 PHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSP 830 (1446)
Q Consensus 752 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 830 (1446)
..++|+.|++++|..... .++.. +++|+.|++++|...+..| .+..+++|+.|++++|.. ..++..+ ..
T Consensus 224 ~~~~L~~L~l~~n~l~~~-~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~------~~ 293 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT-AWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYG------QP 293 (390)
T ss_dssp CCSSCCEEECCSSCCCCC-GGGGG--CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSS------SC
T ss_pred ccccccEEECCCCCCccc-HHHcC--CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCccc------CC
Confidence 247899999999988775 45554 8999999999998777656 788999999999998753 3443322 23
Q ss_pred CCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCCCCCCccEEEEeccCC
Q 042296 831 FPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPERLPSLEILVIQSCEE 895 (1446)
Q Consensus 831 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~ 895 (1446)
+++|+.|++.++ .+... +..+. .+++|+.|++++| .++..-...+++|+.|++++|+.
T Consensus 294 l~~L~~L~L~~n-~l~~~-~~~~~----~l~~L~~L~L~~N-~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 294 IPTLKVLDLSHN-HLLHV-ERNQP----QFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CTTCCEEECCSS-CCCCC-GGGHH----HHTTCSEEECCSS-CCCCCCCCTTCCCSEEECCSSCE
T ss_pred CCCCCEEECCCC-cceec-Ccccc----ccCcCCEEECCCC-ccceeCchhhccCCEEEcCCCCc
Confidence 899999999985 34433 22222 2899999999999 56633346889999999999873
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.5e-18 Score=200.81 Aligned_cols=280 Identities=17% Similarity=0.192 Sum_probs=179.8
Q ss_pred eeEEEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccc-cccccCcccceeeccc
Q 042296 572 RLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNS 649 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~ 649 (1446)
++++++++++.++.+|..+. .+|++|+|++|.++.+|. .|+++++|++|++++|. +..+ |..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECC
Confidence 56777888777777776654 577888888888877765 67788888888888774 4444 6777888888888888
Q ss_pred CCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEee
Q 042296 650 TTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWT 729 (1446)
Q Consensus 650 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 729 (1446)
+|. +..+|..+. ++|++|.... +.........+.++++|+.|+++.|
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~------------------------------n~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHE------------------------------NEITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCS------------------------------SCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CCc-CCccChhhc--ccccEEECCC------------------------------CcccccCHhHhcCCccccEEECCCC
Confidence 776 667776554 4555552110 1112222334566677777777765
Q ss_pred eCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceee
Q 042296 730 CNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLE 808 (1446)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 808 (1446)
..... ......+..+++|+.|++++|....+|..+ +++|+.|++++|...+..+ .+..+++|+.|+
T Consensus 156 ~l~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 156 PLKSS---------GIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp CCCGG---------GBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred cCCcc---------CcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 43210 011234556778888888888888777655 4688888888887665544 678888888888
Q ss_pred cccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCC-C-------
Q 042296 809 VCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFP-E------- 880 (1446)
Q Consensus 809 L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~------- 880 (1446)
+++|.........+. .+++|+.|++.++ .+..+ +..+.. +++|+.|++++| .++ .+| .
T Consensus 223 Ls~n~l~~~~~~~~~------~l~~L~~L~L~~N-~l~~l-p~~l~~----l~~L~~L~l~~N-~i~-~~~~~~f~~~~~ 288 (330)
T 1xku_A 223 LSFNSISAVDNGSLA------NTPHLRELHLNNN-KLVKV-PGGLAD----HKYIQVVYLHNN-NIS-AIGSNDFCPPGY 288 (330)
T ss_dssp CCSSCCCEECTTTGG------GSTTCCEEECCSS-CCSSC-CTTTTT----CSSCCEEECCSS-CCC-CCCTTSSSCSSC
T ss_pred CCCCcCceeChhhcc------CCCCCCEEECCCC-cCccC-Chhhcc----CCCcCEEECCCC-cCC-ccChhhcCCccc
Confidence 887654333222222 2678888888774 33322 222222 788888988888 555 333 2
Q ss_pred --CCCCccEEEEeccCCh-----hhcCCCCCcccEEEEecc
Q 042296 881 --RLPSLEILVIQSCEEL-----LVSIRRLPALCKFEISGC 914 (1446)
Q Consensus 881 --~l~~L~~L~l~~~~~l-----~~~l~~l~~L~~L~l~~~ 914 (1446)
..+.++.|++.+|+.. +..+..++.++.+++++|
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 1356778888877632 346677778888877765
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=2.3e-18 Score=199.35 Aligned_cols=280 Identities=15% Similarity=0.147 Sum_probs=179.2
Q ss_pred eeEEEEeCCCCccccCccccCCCCCceeeccCccccccC-cccccccccceeeccCccccccc-cccccCcccceeeccc
Q 042296 572 RLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNS 649 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~ 649 (1446)
+|++++++++.++.+|..+. .+|++|++++|.++.+| ..|.++++|++|++++|. +..+ |..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECC
Confidence 56777888887777777664 57888888888877664 467788888888888774 4444 6677788888888888
Q ss_pred CCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEee
Q 042296 650 TTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWT 729 (1446)
Q Consensus 650 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 729 (1446)
+|. +..+|..+. ++|++|..... .........+..+++|+.|++++|
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l~~n------------------------------~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRIHDN------------------------------RIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEECCSS------------------------------CCCCCCSGGGSSCSSCCEEECCSC
T ss_pred CCc-CCccCcccc--ccCCEEECCCC------------------------------ccCccCHhHhCCCccCCEEECCCC
Confidence 776 667776655 55665521100 111112223566677777777765
Q ss_pred eCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceee
Q 042296 730 CNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLE 808 (1446)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 808 (1446)
..... ......+..+ +|+.|++++|....+|..+ .++|+.|++++|......+ .+..+++|+.|+
T Consensus 158 ~l~~~---------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 158 PLENS---------GFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp CCBGG---------GSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred ccccC---------CCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 43210 0112334444 7888888888888887765 4688888888888766554 688888899999
Q ss_pred cccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCC-C-------
Q 042296 809 VCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFP-E------- 880 (1446)
Q Consensus 809 L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~------- 880 (1446)
+++|.... +....++ .+++|+.|++.++ .+..+ +..+.. +++|+.|++++| .++ .+| .
T Consensus 224 L~~N~l~~-~~~~~~~-----~l~~L~~L~L~~N-~l~~l-p~~l~~----l~~L~~L~l~~N-~l~-~~~~~~~~~~~~ 289 (332)
T 2ft3_A 224 LGHNQIRM-IENGSLS-----FLPTLRELHLDNN-KLSRV-PAGLPD----LKLLQVVYLHTN-NIT-KVGVNDFCPVGF 289 (332)
T ss_dssp CCSSCCCC-CCTTGGG-----GCTTCCEEECCSS-CCCBC-CTTGGG----CTTCCEEECCSS-CCC-BCCTTSSSCSSC
T ss_pred CCCCcCCc-CChhHhh-----CCCCCCEEECCCC-cCeec-Chhhhc----CccCCEEECCCC-CCC-ccChhHcccccc
Confidence 88765333 3222222 2778888888874 34422 222322 788999999888 555 333 1
Q ss_pred --CCCCccEEEEeccCCh-----hhcCCCCCcccEEEEeccc
Q 042296 881 --RLPSLEILVIQSCEEL-----LVSIRRLPALCKFEISGCK 915 (1446)
Q Consensus 881 --~l~~L~~L~l~~~~~l-----~~~l~~l~~L~~L~l~~~~ 915 (1446)
..++|+.|++.+|+.. +..+..+++|+.+++++|.
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1356788888887632 4456778888888887764
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=7.1e-19 Score=202.09 Aligned_cols=191 Identities=23% Similarity=0.374 Sum_probs=140.6
Q ss_pred HHHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccC--
Q 042296 562 SILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGN-- 639 (1446)
Q Consensus 562 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~-- 639 (1446)
.+|+.++++++|++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|..++.+|..++.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 456667789999999999999999999999999999999999999999999999999999999999888999988765
Q ss_pred -------cccceeecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhh
Q 042296 640 -------LIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKE 712 (1446)
Q Consensus 640 -------L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~ 712 (1446)
+++|++|++++|. +..+|..++++++|++|.
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~----------------------------------------- 212 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLK----------------------------------------- 212 (328)
T ss_dssp -CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEE-----------------------------------------
T ss_pred chhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEE-----------------------------------------
Confidence 8999999999987 678887777777777662
Q ss_pred hhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccC-CCCCCcccCcCccCCceEEEeeCCCC
Q 042296 713 AQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYG-GTKFPIWLGDSYFSNLVTLKFQNCHK 791 (1446)
Q Consensus 713 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~L~~~~~ 791 (1446)
+++|.... ++..+..+++|+.|++++|. ...+|.++.. +++|+.|++++|..
T Consensus 213 -------------L~~N~l~~------------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~--l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 213 -------------IRNSPLSA------------LGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RAPLKRLILKDCSN 265 (328)
T ss_dssp -------------EESSCCCC------------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC--CCCCCEEECTTCTT
T ss_pred -------------ccCCCCCc------------CchhhccCCCCCEEECcCCcchhhhHHHhcC--CCCCCEEECCCCCc
Confidence 22221110 11123334455555555543 3345555544 66677777777666
Q ss_pred CCCCC-CCCCcCccceeecccccceeEeCcc
Q 042296 792 CTSLP-SIGKLLSLKHLEVCRMNRVKSLGSQ 821 (1446)
Q Consensus 792 ~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~ 821 (1446)
.+.+| .++.+++|++|++++|+..+.++..
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 66666 5666777777777766665555443
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=4.5e-19 Score=202.65 Aligned_cols=109 Identities=19% Similarity=0.328 Sum_probs=71.2
Q ss_pred HHHHhhhcCceeEEEEeCC-CCcc-ccCccccCCCCCceeeccCcccc-ccCcccccccccceeeccCcccccccccccc
Q 042296 562 SILQRLLKLHRLKVFSLCG-YQIS-ELPNSVGDLRYLRYLNLSRTCIE-ILPDSINKLYNLHTLLLEDCDRLKKLCADMG 638 (1446)
Q Consensus 562 ~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 638 (1446)
.+|+.+.++++|++|++++ |.+. .+|..|+++++|++|+|++|.++ .+|..|+++++|++|++++|...+.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 4455556677777777764 5555 45666777777777777777766 6666677777777777777644446666677
Q ss_pred CcccceeecccCCCcccccCCcccccc-ccccc
Q 042296 639 NLIKLHHLNNSTTNSLEEMPRGIGKLT-FLQTL 670 (1446)
Q Consensus 639 ~L~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L 670 (1446)
.+++|++|++++|.....+|..+++++ +|++|
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 777777777777663336666666665 56655
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=7.9e-19 Score=200.60 Aligned_cols=250 Identities=15% Similarity=0.139 Sum_probs=178.2
Q ss_pred ccceEEEeecCCCccc-cccccccCCCCcceecccccccCCCCcchhHHHHhhhcCceeEEEEeCCCCcc-ccCccccCC
Q 042296 516 KSLRHLSYIPGGHDGV-KRFADFDDTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFSLCGYQIS-ELPNSVGDL 593 (1446)
Q Consensus 516 ~~~r~ls~~~~~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L 593 (1446)
..++++.+........ .....+.++++|+.|.+.+. +.+...+|..+.++++|++|++++|.++ .+|..|+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~-----n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-----TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCC-----CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 4577777766544321 12346778888888866521 1234456777778999999999999987 678889999
Q ss_pred CCCceeeccCcccc-ccCcccccccccceeeccCccccccccccccCcc-cceeecccCCCcccccCCcccccccccccC
Q 042296 594 RYLRYLNLSRTCIE-ILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLI-KLHHLNNSTTNSLEEMPRGIGKLTFLQTLC 671 (1446)
Q Consensus 594 ~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 671 (1446)
++|++|+|++|.++ .+|..++++++|++|++++|...+.+|..++.+. +|++|++++|.....+|..++.++ |++|.
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 99999999999988 7888899999999999999865558898899988 899999999984447787787776 66662
Q ss_pred ceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCC
Q 042296 672 NFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLR 751 (1446)
Q Consensus 672 ~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~ 751 (1446)
... +......+..+..+++|+.|++++|.... .+..+.
T Consensus 204 Ls~------------------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~~~~~~ 241 (313)
T 1ogq_A 204 LSR------------------------------NMLEGDASVLFGSDKNTQKIHLAKNSLAF------------DLGKVG 241 (313)
T ss_dssp CCS------------------------------SEEEECCGGGCCTTSCCSEEECCSSEECC------------BGGGCC
T ss_pred CcC------------------------------CcccCcCCHHHhcCCCCCEEECCCCceee------------ecCccc
Confidence 110 11122234456677788888887765431 122255
Q ss_pred CCCCcceEEEeccCCC-CCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceeecccccce
Q 042296 752 PHQNLEQFFISGYGGT-KFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLEVCRMNRV 815 (1446)
Q Consensus 752 ~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l 815 (1446)
.+++|+.|++++|... .+|.++.. +++|+.|++++|.+.+.+|..+.+++|+.|++.+|+.+
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGG--CTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ccCCCCEEECcCCcccCcCChHHhc--CcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 5677788888777765 56777654 77777777777777767776677777777777776543
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=5.3e-17 Score=187.92 Aligned_cols=96 Identities=20% Similarity=0.299 Sum_probs=57.0
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCcccccc-CcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
+.|++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence 3556666666666655 34566666666666666666654 455666666666666665 3555655544 56666666
Q ss_pred cCCCcccccCCc-cccccccccc
Q 042296 649 STTNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 649 ~~~~~~~~~p~~-i~~L~~L~~L 670 (1446)
++|. +..+|.. ++++++|++|
T Consensus 131 ~~n~-i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 131 HDNR-IRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp CSSC-CCCCCSGGGSSCSSCCEE
T ss_pred CCCc-cCccCHhHhCCCccCCEE
Confidence 6665 4555543 5556666655
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.8e-18 Score=218.79 Aligned_cols=84 Identities=23% Similarity=0.231 Sum_probs=42.7
Q ss_pred cCceeEEEEeCCCCcccc-CccccCC--CCCceeeccCcc-cc--ccCcccccccccceeeccCcccccc----cccccc
Q 042296 569 KLHRLKVFSLCGYQISEL-PNSVGDL--RYLRYLNLSRTC-IE--ILPDSINKLYNLHTLLLEDCDRLKK----LCADMG 638 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~l-p~~i~~L--~~Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i~ 638 (1446)
.+++|++|+|++|.++.. +..+..+ .+|++|+|++|. +. .++..+.++++|++|+|++|..... ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 566666666666655421 2333332 236666666654 22 2333334566666666666632111 222334
Q ss_pred CcccceeecccCCC
Q 042296 639 NLIKLHHLNNSTTN 652 (1446)
Q Consensus 639 ~L~~L~~L~l~~~~ 652 (1446)
.+++|++|++++|.
T Consensus 190 ~~~~L~~L~L~~n~ 203 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE 203 (592)
T ss_dssp HCCCCCEEECTTCC
T ss_pred cCCCccEEEeeccC
Confidence 55666666666655
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=185.45 Aligned_cols=96 Identities=20% Similarity=0.314 Sum_probs=70.8
Q ss_pred ceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccc-cccccCcccceeecc
Q 042296 571 HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNN 648 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l 648 (1446)
....+.+++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|. +..+ |..|.++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEEC
Confidence 334457788888888887765 488888888888887765 78888888888888874 5555 556888888888888
Q ss_pred cCCCcccccCCc-cccccccccc
Q 042296 649 STTNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 649 ~~~~~~~~~p~~-i~~L~~L~~L 670 (1446)
++|. +..+|.. ++++++|++|
T Consensus 108 s~n~-l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 108 SYNY-LSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp CSSC-CSSCCHHHHTTCTTCSEE
T ss_pred CCCc-CCcCCHhHhCCCccCCEE
Confidence 8887 6666644 5555555554
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=4.3e-16 Score=192.34 Aligned_cols=257 Identities=18% Similarity=0.134 Sum_probs=191.7
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
....+++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|++
T Consensus 38 ~~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 38 LNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEE
T ss_pred cCCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEEC
Confidence 34568999999999999998876 799999999999999987 6789999999998 4788887 7899999999
Q ss_pred cCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEe
Q 042296 649 STTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQW 728 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 728 (1446)
++|. +..+|. .+++|+.|....+ .+..+ + ...++|+.|+++.
T Consensus 109 s~N~-l~~l~~---~l~~L~~L~L~~N------------------------~l~~l-------p---~~l~~L~~L~Ls~ 150 (622)
T 3g06_A 109 FSNP-LTHLPA---LPSGLCKLWIFGN------------------------QLTSL-------P---VLPPGLQELSVSD 150 (622)
T ss_dssp CSCC-CCCCCC---CCTTCCEEECCSS------------------------CCSCC-------C---CCCTTCCEEECCS
T ss_pred cCCc-CCCCCC---CCCCcCEEECCCC------------------------CCCcC-------C---CCCCCCCEEECcC
Confidence 9997 788887 4556666622111 00000 0 0136788898887
Q ss_pred eeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceee
Q 042296 729 TCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLE 808 (1446)
Q Consensus 729 n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 808 (1446)
|.....+ ..+++|+.|++++|.+..+|. .+++|+.|++++|.+.. +|. .+++|+.|+
T Consensus 151 N~l~~l~---------------~~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~ 207 (622)
T 3g06_A 151 NQLASLP---------------ALPSELCKLWAYNNQLTSLPM-----LPSGLQELSVSDNQLAS-LPT--LPSELYKLW 207 (622)
T ss_dssp SCCSCCC---------------CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC-CCC--CCTTCCEEE
T ss_pred CcCCCcC---------------CccCCCCEEECCCCCCCCCcc-----cCCCCcEEECCCCCCCC-CCC--ccchhhEEE
Confidence 7554321 124688999999999888882 27889999999987654 443 247899999
Q ss_pred cccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCCCCCCccEE
Q 042296 809 VCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPERLPSLEIL 888 (1446)
Q Consensus 809 L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L 888 (1446)
+++|. +..++ ..+++|+.|.+.++ .++.+. . .+++|+.|++++| .++ .+|..+++|+.|
T Consensus 208 L~~N~-l~~l~---------~~~~~L~~L~Ls~N-~L~~lp-----~---~l~~L~~L~Ls~N-~L~-~lp~~~~~L~~L 266 (622)
T 3g06_A 208 AYNNR-LTSLP---------ALPSGLKELIVSGN-RLTSLP-----V---LPSELKELMVSGN-RLT-SLPMLPSGLLSL 266 (622)
T ss_dssp CCSSC-CSSCC---------CCCTTCCEEECCSS-CCSCCC-----C---CCTTCCEEECCSS-CCS-CCCCCCTTCCEE
T ss_pred CcCCc-ccccC---------CCCCCCCEEEccCC-ccCcCC-----C---CCCcCcEEECCCC-CCC-cCCcccccCcEE
Confidence 98764 22222 22688999999874 444421 1 1789999999998 776 788888999999
Q ss_pred EEeccC--ChhhcCCCCCcccEEEEecccC
Q 042296 889 VIQSCE--ELLVSIRRLPALCKFEISGCKK 916 (1446)
Q Consensus 889 ~l~~~~--~l~~~l~~l~~L~~L~l~~~~~ 916 (1446)
++++|. .+|..+..+++|+.|++++|+.
T Consensus 267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred eCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 999986 4567788899999999998863
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=6.4e-18 Score=213.74 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=29.6
Q ss_pred cccccEEEeecccCcc-ccCccccccCCcccEEEeccCCCCcc--cCC-CCCCCCccEEEEeecC
Q 042296 1007 SCRIEYLELINCQGLV-KLPQTSLSLINSLKEIGIYNCSSLVC--FPE-AALPSQLRIISIQYCN 1067 (1446)
Q Consensus 1007 ~~~L~~L~l~~~~~l~-~lp~~~~~~l~~L~~L~l~~c~~l~~--l~~-~~~~~~L~~L~l~~~~ 1067 (1446)
+++|+.|++++|.... .++. .+..+++|++|++++|+ ++. ++. ...+++|+.|++++|+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLME-FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHH-HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHH-HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 4556666666653221 1222 34555666666666665 321 111 1124566666666666
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=1.6e-15 Score=175.43 Aligned_cols=158 Identities=11% Similarity=0.096 Sum_probs=97.8
Q ss_pred CcCCceeecccCcccccccCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEE
Q 042296 1160 DSLEHLEVGICSKLKFLSCSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGI 1239 (1446)
Q Consensus 1160 ~~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 1239 (1446)
++|+.|+++++. ++.++... .++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++
T Consensus 171 ~~L~~L~l~~n~-l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 171 KKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp TTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCcCEEECCCCc-cccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 344555554432 23333222 267777777777655555667778888888888887766655667777888888888
Q ss_pred eccCCCcccCCCCCCcccccceecccccCccccccc-CCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcc
Q 042296 1240 WSCGNLVSFPEGGLPSANLTKLQITWCDKLEALPEG-MNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWK 1318 (1446)
Q Consensus 1240 ~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 1318 (1446)
++| .++.+|..+..+++|++|++++|. ++.+|.. +.... ......+|+.|++++|+...
T Consensus 248 ~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 248 NNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCG
T ss_pred CCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcc------------------cccccccccceEeecCcccc
Confidence 887 566777777777778888877653 4444321 10000 00023567888888887532
Q ss_pred hhhhcccCccCCCCCcceeeecCc
Q 042296 1319 SLMEWGEGGLNRFSSLQRLSIGGL 1342 (1446)
Q Consensus 1319 ~l~~~~~~~l~~l~~L~~L~l~~~ 1342 (1446)
. ...+..|..+.+|+.+++++|
T Consensus 308 ~--~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 308 W--EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp G--GSCGGGGTTCCCGGGEEC---
T ss_pred c--ccCccccccccceeEEEeccc
Confidence 1 123445888999999999885
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=4.3e-15 Score=183.42 Aligned_cols=256 Identities=25% Similarity=0.334 Sum_probs=168.7
Q ss_pred ccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCCCccEE
Q 042296 1008 CRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETL 1087 (1446)
Q Consensus 1008 ~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L 1087 (1446)
.+++.|++++| .++.+|. .+. ++|+.|++++| .++.+|. .+++|+.|++++|. ++.+|. ..++|++|
T Consensus 40 ~~l~~L~ls~n-~L~~lp~-~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPD-CLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSS-CCSCCCS-CCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEE
T ss_pred CCCcEEEecCC-CcCccCh-hhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEE
Confidence 45888999888 5778886 332 78999999986 5777776 67889999999988 556775 34669999
Q ss_pred EEEecCCCccccCCCCCCCccEEEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCCcCCceee
Q 042296 1088 KVYGCNLLTYITSVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHLEV 1167 (1446)
Q Consensus 1088 ~l~~~~~l~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 1167 (1446)
++++|.... ++. .+++|+.|++.++ +++.++. .+++|++|++++|.
T Consensus 107 ~Ls~N~l~~-l~~--~l~~L~~L~L~~N-~l~~lp~----------~l~~L~~L~Ls~N~-------------------- 152 (622)
T 3g06_A 107 SIFSNPLTH-LPA--LPSGLCKLWIFGN-QLTSLPV----------LPPGLQELSVSDNQ-------------------- 152 (622)
T ss_dssp EECSCCCCC-CCC--CCTTCCEEECCSS-CCSCCCC----------CCTTCCEEECCSSC--------------------
T ss_pred ECcCCcCCC-CCC--CCCCcCEEECCCC-CCCcCCC----------CCCCCCEEECcCCc--------------------
Confidence 998886443 443 5667777777664 3443331 12455555555542
Q ss_pred cccCcccccccCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcc
Q 042296 1168 GICSKLKFLSCSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVS 1247 (1446)
Q Consensus 1168 ~~c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~ 1247 (1446)
++.++. .+.+|+.|++++|.. +.+| ..+++|+.|++++|.. ..+|.. +++|+.|++++| .++.
T Consensus 153 -----l~~l~~---~~~~L~~L~L~~N~l-~~l~---~~~~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N-~l~~ 215 (622)
T 3g06_A 153 -----LASLPA---LPSELCKLWAYNNQL-TSLP---MLPSGLQELSVSDNQL-ASLPTL---PSELYKLWAYNN-RLTS 215 (622)
T ss_dssp -----CSCCCC---CCTTCCEEECCSSCC-SCCC---CCCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSS-CCSS
T ss_pred -----CCCcCC---ccCCCCEEECCCCCC-CCCc---ccCCCCcEEECCCCCC-CCCCCc---cchhhEEECcCC-cccc
Confidence 222221 234556666666543 3344 4567788888877653 335442 467788888777 5667
Q ss_pred cCCCCCCcccccceecccccCcccccccCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCc
Q 042296 1248 FPEGGLPSANLTKLQITWCDKLEALPEGMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGG 1327 (1446)
Q Consensus 1248 lp~~~~~~~~L~~L~l~~c~~l~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~ 1327 (1446)
+|.. +++|+.|++++| .++.+|..+++|+.|++++| .+..+|. .+++|+.|++++|.+. .++ ..
T Consensus 216 l~~~---~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N~L~-~lp----~~ 279 (622)
T 3g06_A 216 LPAL---PSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRNQLT-RLP----ES 279 (622)
T ss_dssp CCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSCCC-SCC----GG
T ss_pred cCCC---CCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCCCCC-cCC----HH
Confidence 7643 257888888865 56667777778888888775 5556664 3567888888888654 333 23
Q ss_pred cCCCCCcceeeecCcC
Q 042296 1328 LNRFSSLQRLSIGGLH 1343 (1446)
Q Consensus 1328 l~~l~~L~~L~l~~~~ 1343 (1446)
+.++++|+.|++++|+
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 7778888888888865
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=1.7e-16 Score=181.36 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=42.1
Q ss_pred eeEEEEeCCCCccccCcc-ccCCCCCceeeccCcccccc---CcccccccccceeeccCccccccccccccCcccceeec
Q 042296 572 RLKVFSLCGYQISELPNS-VGDLRYLRYLNLSRTCIEIL---PDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLN 647 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 647 (1446)
+|++|++++|.++.+|.. |.++++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEE
Confidence 455555555555555433 45555555555555555433 344445555555555554 3444555555555555555
Q ss_pred ccCCC
Q 042296 648 NSTTN 652 (1446)
Q Consensus 648 l~~~~ 652 (1446)
+++|.
T Consensus 108 l~~n~ 112 (306)
T 2z66_A 108 FQHSN 112 (306)
T ss_dssp CTTSE
T ss_pred CCCCc
Confidence 55554
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=184.15 Aligned_cols=248 Identities=19% Similarity=0.164 Sum_probs=160.1
Q ss_pred ceeEEEEeCCCCccccCc-cccCCCCCceeeccCcccccc-CcccccccccceeeccCcccccccccc-ccCcccceeec
Q 042296 571 HRLKVFSLCGYQISELPN-SVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 647 (1446)
++|++|++++|.++.+|. .|.++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 478899999999988865 788999999999999999877 457899999999999997 46777765 88899999999
Q ss_pred ccCCCcccccCC--cccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEE
Q 042296 648 NSTTNSLEEMPR--GIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLL 725 (1446)
Q Consensus 648 l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 725 (1446)
+++|. +..+|. .++++++|++|...... ......+..+.++++|+.|+
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~-----------------------------~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMD-----------------------------TFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESS-----------------------------SCCEECTTTTTTCCEEEEEE
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCc-----------------------------cccccCHHHccCCCCCCEEE
Confidence 99987 777776 57778888777322111 01111223455667777777
Q ss_pred EEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC----CCCCc
Q 042296 726 LQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP----SIGKL 801 (1446)
Q Consensus 726 l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~----~l~~l 801 (1446)
+++|..... .+..+..+++|+.|++++|....+|..+.. .+++|+.|++++|...+..+ .....
T Consensus 181 l~~n~l~~~-----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 181 IDASDLQSY-----------EPKSLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp EEETTCCEE-----------CTTTTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTTCCCC------CC
T ss_pred CCCCCcCcc-----------CHHHHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCcccccccccccccccc
Confidence 777543311 234456677777788877776666554322 25777788887776543221 11223
Q ss_pred CccceeecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCCCC-
Q 042296 802 LSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTFPE- 880 (1446)
Q Consensus 802 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~- 880 (1446)
+.++.+++.++. +.+ ..+.. .+..+.. +++|+.|++++| .++ .+|.
T Consensus 249 ~~l~~l~L~~~~-------------------------l~~-~~l~~-l~~~l~~----l~~L~~L~Ls~N-~l~-~i~~~ 295 (353)
T 2z80_A 249 SLIKKFTFRNVK-------------------------ITD-ESLFQ-VMKLLNQ----ISGLLELEFSRN-QLK-SVPDG 295 (353)
T ss_dssp CCCCEEEEESCB-------------------------CCH-HHHHH-HHHHHHT----CTTCCEEECCSS-CCC-CCCTT
T ss_pred chhhcccccccc-------------------------ccC-cchhh-hHHHHhc----ccCCCEEECCCC-CCC-ccCHH
Confidence 334444443321 100 00000 0111111 788888888888 666 5663
Q ss_pred ---CCCCccEEEEeccC
Q 042296 881 ---RLPSLEILVIQSCE 894 (1446)
Q Consensus 881 ---~l~~L~~L~l~~~~ 894 (1446)
.+++|++|++++|+
T Consensus 296 ~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 296 IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HHhcCCCCCEEEeeCCC
Confidence 46788888888886
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=1.3e-15 Score=184.41 Aligned_cols=98 Identities=24% Similarity=0.308 Sum_probs=71.1
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccC-cccccccccceeeccCcccccccccc-ccCcccceeec
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 647 (1446)
+.|++|+|++|.|+.+ |..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|. +..+|.. |..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence 4677788888887766 567788888888888888887664 567788888888888874 5566544 77788888888
Q ss_pred ccCCCcccccCC-ccccccccccc
Q 042296 648 NSTTNSLEEMPR-GIGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~-~i~~L~~L~~L 670 (1446)
+++|. +..+|. .++++++|+.|
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCC-cceeCHhHHhcCCcccEE
Confidence 88877 566654 45566666655
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=181.14 Aligned_cols=98 Identities=32% Similarity=0.388 Sum_probs=60.0
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccC-cccccccccceeeccCccccccccc-cccCcccceeec
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 647 (1446)
+.+++|+|++|.++.+ +..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++| .+..+|. .|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 4566666766666665 356666667777777776666554 45666667777777666 3555544 366666677777
Q ss_pred ccCCCcccccCC-ccccccccccc
Q 042296 648 NSTTNSLEEMPR-GIGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~-~i~~L~~L~~L 670 (1446)
+++|. +..+|. .++++++|++|
T Consensus 143 L~~N~-i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 143 LRNNP-IESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCc-ccccCHHHhhhCcccCEe
Confidence 76665 444443 34455555544
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=4.9e-16 Score=177.60 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=42.0
Q ss_pred EEeCCCCccccCccccCCCCCceeeccCccccccCcc-cccccccceeeccCccccccc---cccccCcccceeecccCC
Q 042296 576 FSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDS-INKLYNLHTLLLEDCDRLKKL---CADMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 576 L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~l---p~~i~~L~~L~~L~l~~~ 651 (1446)
++++++.++.+|..+. .+|++|+|++|.++.+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC
Confidence 4444444554544332 3455555555555544432 3455555555555442 2222 333444455555555554
Q ss_pred CcccccCCccccccccccc
Q 042296 652 NSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 652 ~~~~~~p~~i~~L~~L~~L 670 (1446)
. +..+|..+..+++|++|
T Consensus 89 ~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 89 G-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp S-EEEEEEEEETCTTCCEE
T ss_pred c-cccChhhcCCCCCCCEE
Confidence 4 44444444444444444
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=3.2e-15 Score=180.97 Aligned_cols=94 Identities=24% Similarity=0.388 Sum_probs=80.3
Q ss_pred eEEEEeCCCCccccCccccCCCCCceeeccCcccccc-CcccccccccceeeccCccccccc-cccccCcccceeecccC
Q 042296 573 LKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNST 650 (1446)
Q Consensus 573 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~ 650 (1446)
.+.+++++..++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++|. +..+ |..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCC
Confidence 4578888999999998776 6999999999999977 5789999999999999985 5555 57799999999999999
Q ss_pred CCcccccCCc-cccccccccc
Q 042296 651 TNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 651 ~~~~~~~p~~-i~~L~~L~~L 670 (1446)
|. +..+|.. ++.+++|++|
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEE
T ss_pred Cc-CCccChhhhcccCCCCEE
Confidence 98 7777755 7778888777
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=9.8e-16 Score=184.76 Aligned_cols=241 Identities=17% Similarity=0.191 Sum_probs=134.0
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccC-cccccccccceeeccCccccccc-cccccCcccceeecccCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~ 651 (1446)
+.+++++..++.+|..+. .++++|+|++|+|+.++ ..|.++++|++|+|++|. +..+ |..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC
Confidence 355666666666666554 56667777777666554 456667777777777663 4444 345666677777777666
Q ss_pred CcccccCC-cccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeee
Q 042296 652 NSLEEMPR-GIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTC 730 (1446)
Q Consensus 652 ~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 730 (1446)
. +..+|. .++.+++|++|....+ .+.......+..+++|+.|+++.|.
T Consensus 123 ~-l~~~~~~~~~~l~~L~~L~L~~N------------------------------~i~~~~~~~~~~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 123 R-LTTIPNGAFVYLSKLKELWLRNN------------------------------PIESIPSYAFNRIPSLRRLDLGELK 171 (440)
T ss_dssp C-CSSCCTTTSCSCSSCCEEECCSC------------------------------CCCEECTTTTTTCTTCCEEECCCCT
T ss_pred c-CCeeCHhHhhccccCceeeCCCC------------------------------cccccCHHHhhhCcccCEeCCCCCC
Confidence 5 555554 3666666666621110 0111112234455566666665421
Q ss_pred CCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceeec
Q 042296 731 NTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLEV 809 (1446)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 809 (1446)
.... .....+..+++|+.|++++|....+|. +. .+++|+.|+|++|.+....| .+..+++|+.|++
T Consensus 172 ~l~~----------i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 172 RLSY----------ISEGAFEGLSNLRYLNLAMCNLREIPN-LT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp TCCE----------ECTTTTTTCSSCCEEECTTSCCSSCCC-CT--TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred Ccce----------eCcchhhcccccCeecCCCCcCccccc-cC--CCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 1100 011234556666667776666666664 22 26677777777776555444 5667777777777
Q ss_pred ccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCC
Q 042296 810 CRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCS 872 (1446)
Q Consensus 810 ~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 872 (1446)
++|... .+....+. .+++|+.|++.+. .++......+.. +++|+.|++++|+
T Consensus 239 ~~n~l~-~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~~~~----l~~L~~L~L~~Np 290 (440)
T 3zyj_A 239 IQSQIQ-VIERNAFD-----NLQSLVEINLAHN-NLTLLPHDLFTP----LHHLERIHLHHNP 290 (440)
T ss_dssp TTCCCC-EECTTSST-----TCTTCCEEECTTS-CCCCCCTTTTSS----CTTCCEEECCSSC
T ss_pred CCCcee-EEChhhhc-----CCCCCCEEECCCC-CCCccChhHhcc----ccCCCEEEcCCCC
Confidence 665433 33222222 2667777777663 444443333332 7788888888875
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=1e-17 Score=204.70 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=26.4
Q ss_pred eeEEEEeCCCCccccC--ccccCCCCCceeeccCcccc-----ccCcccccccccceeeccCc
Q 042296 572 RLKVFSLCGYQISELP--NSVGDLRYLRYLNLSRTCIE-----ILPDSINKLYNLHTLLLEDC 627 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp--~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~ 627 (1446)
+|++|||+++.++..+ ..+..+++|++|+|++|.++ .+|..+..+++|++|++++|
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 66 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC
Confidence 4455555555544321 11344455555555555544 23444444555555555554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=2.7e-16 Score=180.20 Aligned_cols=255 Identities=15% Similarity=0.114 Sum_probs=142.7
Q ss_pred HHHHhhh-cCceeEEEEeCCCCccccC-ccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccC
Q 042296 562 SILQRLL-KLHRLKVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGN 639 (1446)
Q Consensus 562 ~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 639 (1446)
..+..++ .+++|++|+|++|.++.++ ..|+++++|++|+|++|.++.++. +..+++|++|++++| .+..+|.
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~---- 97 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV---- 97 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE----
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC----
Confidence 3444555 6678888888888888774 678888888888888888886665 888888888888887 4665553
Q ss_pred cccceeecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCC
Q 042296 640 LIKLHHLNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKK 719 (1446)
Q Consensus 640 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~ 719 (1446)
.++|++|++++|. +..++.. .+++|++|..... ......+..+..++
T Consensus 98 ~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N------------------------------~l~~~~~~~~~~l~ 144 (317)
T 3o53_A 98 GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANN------------------------------KITMLRDLDEGCRS 144 (317)
T ss_dssp CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSS------------------------------CCCSGGGBCTGGGS
T ss_pred CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCC------------------------------CCCCccchhhhccC
Confidence 3788888888887 5555532 2455666522111 11111222334445
Q ss_pred CCceEEEEeeeCCCCCCCCCchhHHHHhccC-CCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCC
Q 042296 720 NLKVLLLQWTCNTDTDGSRDLGTETRVLDML-RPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSI 798 (1446)
Q Consensus 720 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l 798 (1446)
+|+.|++++|..... .+..+ ..+++|+.|++++|....+|.... +++|+.|++++|......+.+
T Consensus 145 ~L~~L~Ls~N~l~~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~ 210 (317)
T 3o53_A 145 RVQYLDLKLNEIDTV-----------NFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEF 210 (317)
T ss_dssp SEEEEECTTSCCCEE-----------EGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGG
T ss_pred CCCEEECCCCCCCcc-----------cHHHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCcCCcchhhh
Confidence 555555555433211 01111 234556666666666555543321 556666666666554433345
Q ss_pred CCcCccceeecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEecCCCCCcCCC
Q 042296 799 GKLLSLKHLEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLLRCSKLQGTF 878 (1446)
Q Consensus 799 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 878 (1446)
..+++|+.|++++|. +..++..+ ..+++|+.|++.+.+-.....+..+.. +++|+.+++.+|..+++..
T Consensus 211 ~~l~~L~~L~L~~N~-l~~l~~~~------~~l~~L~~L~l~~N~~~~~~~~~~~~~----~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 211 QSAAGVTWISLRNNK-LVLIEKAL------RFSQNLEHFDLRGNGFHCGTLRDFFSK----NQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp GGGTTCSEEECTTSC-CCEECTTC------CCCTTCCEEECTTCCCBHHHHHHHHHT----CHHHHHHHHHHHHHHHSSS
T ss_pred cccCcccEEECcCCc-ccchhhHh------hcCCCCCEEEccCCCccCcCHHHHHhc----cccceEEECCCchhccCCc
Confidence 566666666666543 33333322 125566666666533111222222221 5666666666555555444
Q ss_pred CC
Q 042296 879 PE 880 (1446)
Q Consensus 879 p~ 880 (1446)
|.
T Consensus 280 ~~ 281 (317)
T 3o53_A 280 EE 281 (317)
T ss_dssp SC
T ss_pred hh
Confidence 43
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=1.2e-17 Score=203.97 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=28.4
Q ss_pred cCceeEEEEeCCCCcccc-Cccc-cCCC----CCceeeccCcccc-----ccCcccccccccceeeccCcc
Q 042296 569 KLHRLKVFSLCGYQISEL-PNSV-GDLR----YLRYLNLSRTCIE-----ILPDSINKLYNLHTLLLEDCD 628 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~l-p~~i-~~L~----~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~ 628 (1446)
.+++|++|+|++|.+... +..+ ..+. +|++|+|++|.++ .+|..+.++++|++|++++|.
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 455555555555554421 1111 1222 3555555555554 234455555555555555553
No 68
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.57 E-value=3.7e-15 Score=137.46 Aligned_cols=81 Identities=27% Similarity=0.394 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhh--ccCChHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 042296 12 SIELLVNKLASEGLRFFARQEQILADLMKWKKMLMKINVVLDDADER--QRTDKSVKLWLGELQNLAYDVEDLLDEFETE 89 (1446)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~eD~ld~~~~~ 89 (1446)
+++.+++|+.+.+.+++....|+++++++|+++|.+|++||.+|+.+ +..++.++.|+++|||+|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999987 5689999999999999999999999999998
Q ss_pred HHh
Q 042296 90 ALG 92 (1446)
Q Consensus 90 ~~~ 92 (1446)
...
T Consensus 82 ~~~ 84 (115)
T 3qfl_A 82 VDG 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 743
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=4.7e-15 Score=167.36 Aligned_cols=199 Identities=21% Similarity=0.215 Sum_probs=115.3
Q ss_pred ceeEEEEeCCCCccccC-ccccCCCCCceeeccCcccccc-CcccccccccceeeccCccccccc-cccccCcccceeec
Q 042296 571 HRLKVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~ 647 (1446)
+.|++|++++|.++.+| ..|..+++|++|+|++|.++.+ |..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 46777788888877764 4577778888888888877766 567777888888888877545555 56677788888888
Q ss_pred ccCCCccccc-CCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEE
Q 042296 648 NSTTNSLEEM-PRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLL 726 (1446)
Q Consensus 648 l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 726 (1446)
+++|. +..+ |..++++++|++|..... .........+..+++|+.|++
T Consensus 112 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n------------------------------~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 112 LDRCG-LQELGPGLFRGLAALQYLYLQDN------------------------------ALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSS------------------------------CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCc-CCEECHhHhhCCcCCCEEECCCC------------------------------cccccCHhHhccCCCccEEEC
Confidence 88777 4444 444666666666621100 001111122344555555555
Q ss_pred EeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCC-CcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCcc
Q 042296 727 QWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKF-PIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSL 804 (1446)
Q Consensus 727 ~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 804 (1446)
++|..... ....+..+++|+.|++++|....+ |.++.. +++|+.|++++|...+..+ .+..+++|
T Consensus 161 ~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 161 HGNRISSV-----------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp CSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred CCCccccc-----------CHHHhcCccccCEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHHHcccCccc
Confidence 55433211 011244455566666666554443 444433 5566666666655443222 35555666
Q ss_pred ceeeccccc
Q 042296 805 KHLEVCRMN 813 (1446)
Q Consensus 805 ~~L~L~~~~ 813 (1446)
+.|++++|+
T Consensus 228 ~~L~l~~N~ 236 (285)
T 1ozn_A 228 QYLRLNDNP 236 (285)
T ss_dssp CEEECCSSC
T ss_pred CEEeccCCC
Confidence 666665543
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=1.2e-14 Score=164.08 Aligned_cols=94 Identities=23% Similarity=0.234 Sum_probs=79.8
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccC-cccccccccceeeccCccccccc-cccccCcccceeecccCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~ 651 (1446)
++++++++.++.+|..+ ..+|++|++++|.++.+| ..|.++++|++|++++|. +..+ |..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCC
Confidence 67899999999999765 479999999999999887 578999999999999985 5555 778999999999999999
Q ss_pred Cccccc-CCccccccccccc
Q 042296 652 NSLEEM-PRGIGKLTFLQTL 670 (1446)
Q Consensus 652 ~~~~~~-p~~i~~L~~L~~L 670 (1446)
..+..+ |..++.+++|++|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEE
T ss_pred CCccccCHHHhcCCcCCCEE
Confidence 646666 5667778877777
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=4.1e-15 Score=169.91 Aligned_cols=202 Identities=19% Similarity=0.176 Sum_probs=127.7
Q ss_pred cCceeEEEEeCCCCcc-ccCccc--cCCCCCceeeccCccccccCcccccc-----cccceeeccCccccccc-cccccC
Q 042296 569 KLHRLKVFSLCGYQIS-ELPNSV--GDLRYLRYLNLSRTCIEILPDSINKL-----YNLHTLLLEDCDRLKKL-CADMGN 639 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~~~~l-p~~i~~ 639 (1446)
.+++|++|+|++|.++ .+|..+ +.+++|++|+|++|+++.+|..++.+ ++|++|++++|. +..+ |..|++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence 5777777777777776 456665 77777777777777777667777766 777777777774 4444 366777
Q ss_pred cccceeecccCCCcccc--cCCcc--cccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhc
Q 042296 640 LIKLHHLNNSTTNSLEE--MPRGI--GKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQL 715 (1446)
Q Consensus 640 L~~L~~L~l~~~~~~~~--~p~~i--~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 715 (1446)
+++|++|++++|...+. +|..+ +++++|++|....+ .+ ..........+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N------~l---------------------~~~~~~~~~~~ 224 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA------GM---------------------ETPSGVCSALA 224 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS------CC---------------------CCHHHHHHHHH
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC------cC---------------------cchHHHHHHHH
Confidence 77777777777763322 23333 66666666621100 00 01112222334
Q ss_pred cCCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCC
Q 042296 716 DKKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSL 795 (1446)
Q Consensus 716 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 795 (1446)
..+++|+.|++++|...+... ...+..+++|+.|++++|..+.+|.++. ++|+.|++++|...+.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~----------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~- 289 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAG----------APSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN- 289 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCC----------CSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-
T ss_pred hcCCCCCEEECCCCcCCcccc----------hhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-
Confidence 456778888887765543210 1223445778888888888777777663 6788888888775544
Q ss_pred CCCCCcCccceeeccccc
Q 042296 796 PSIGKLLSLKHLEVCRMN 813 (1446)
Q Consensus 796 ~~l~~l~~L~~L~L~~~~ 813 (1446)
|.+..+++|++|++++|+
T Consensus 290 p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 290 PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTTSCEEEEEECTTCT
T ss_pred hhHhhCCCCCEEeccCCC
Confidence 667777888888887764
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=5.7e-16 Score=177.05 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=49.2
Q ss_pred eEEEEeCCCCccc--cCcccc-------CCCCCceeeccCcccc-ccCccc--ccccccceeeccCccccccccccccCc
Q 042296 573 LKVFSLCGYQISE--LPNSVG-------DLRYLRYLNLSRTCIE-ILPDSI--NKLYNLHTLLLEDCDRLKKLCADMGNL 640 (1446)
Q Consensus 573 Lr~L~L~~~~i~~--lp~~i~-------~L~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~~~~~lp~~i~~L 640 (1446)
|++|+|++|.+.. +|..+. ++.+|++|+|++|.++ .+|..+ +.+++|++|++++|. +..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence 5555555555532 344333 4555666666665555 455544 555556666665553 33335545554
Q ss_pred -----ccceeecccCCCcccccC-Cccccccccccc
Q 042296 641 -----IKLHHLNNSTTNSLEEMP-RGIGKLTFLQTL 670 (1446)
Q Consensus 641 -----~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L 670 (1446)
++|++|++++|. +..+| ..++++++|++|
T Consensus 144 ~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTL 178 (312)
T ss_dssp HTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEE
T ss_pred HHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEE
Confidence 555566655555 33333 344444444444
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=5.5e-14 Score=153.77 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=134.2
Q ss_pred cCcccccccCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccC-ccCCCCCcccEEEEeccCCCccc
Q 042296 1170 CSKLKFLSCSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILP-GGLHKLRHLQEVGIWSCGNLVSF 1248 (1446)
Q Consensus 1170 c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~c~~l~~l 1248 (1446)
|..++.+|. ...+++.|++++|...+..+..+.++++|+.|++++|..++.++ ..|.++++|++|++++|..++.+
T Consensus 20 c~~l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 444555554 34567777777766444444467777888888888776444444 35777788888888774467776
Q ss_pred CC-CCCCcccccceecccccCcccccc--cCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhccc
Q 042296 1249 PE-GGLPSANLTKLQITWCDKLEALPE--GMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGE 1325 (1446)
Q Consensus 1249 p~-~~~~~~~L~~L~l~~c~~l~~lp~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~ 1325 (1446)
|. .+..+++|++|++++|. ++.+|. .+++|+ .|+.|++++|..+..++ .
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~------------------------~L~~L~l~~N~~l~~i~---~ 148 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTD------------------------IFFILEITDNPYMTSIP---V 148 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCC------------------------SEEEEEEESCTTCCEEC---T
T ss_pred CHHHhCCCCCCCEEeCCCCC-Cccccccccccccc------------------------cccEEECCCCcchhhcC---c
Confidence 64 34456677777777653 333443 122222 12266666662223222 2
Q ss_pred CccCCCCCcc-eeeecCcCCccccCcccccCCCcccccceecccccCCccCccC-CCCC-CCcceeecccCCCccccCCC
Q 042296 1326 GGLNRFSSLQ-RLSIGGLHDVVSFSPQELGTTLPASLTHLWIYDFQNLECLSSV-GQNL-TSLVYLWLYACPKLKYFSDK 1402 (1446)
Q Consensus 1326 ~~l~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~~~-~~~l-~~L~~L~l~~c~~l~~l~~~ 1402 (1446)
..|..+++|+ +|++++| .+..++...+. . .+|++|+++++..++.+|.. +.++ ++|+.|++++ ++++.+|..
T Consensus 149 ~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~--~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~ 223 (239)
T 2xwt_C 149 NAFQGLCNETLTLKLYNN-GFTSVQGYAFN--G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK 223 (239)
T ss_dssp TTTTTTBSSEEEEECCSC-CCCEECTTTTT--T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT
T ss_pred ccccchhcceeEEEcCCC-CCcccCHhhcC--C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh
Confidence 3367778888 8888774 35566553321 1 57888888887667777654 4778 8999999998 678888876
Q ss_pred CCCCccceEeccCCchh
Q 042296 1403 GLPTSLLQLYIKDCPLI 1419 (1446)
Q Consensus 1403 ~~~~sL~~L~i~~c~~L 1419 (1446)
..++|+.|++.+++.|
T Consensus 224 -~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 224 -GLEHLKELIARNTWTL 239 (239)
T ss_dssp -TCTTCSEEECTTC---
T ss_pred -HhccCceeeccCccCC
Confidence 4568999999988754
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=1e-14 Score=165.81 Aligned_cols=190 Identities=18% Similarity=0.207 Sum_probs=133.9
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
.+++|+.|++++|.++.+| .+..+++|++|+|++|.++.+|. +.++++|++|++++|. +..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 5667888888888888887 57888888888888888888877 8888888888888874 66665 5888888888888
Q ss_pred cCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEe
Q 042296 649 STTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQW 728 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 728 (1446)
++|. +..+|. ++.+++|++|...... ..... .+..+++|+.|+++.
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~------------------------------l~~~~--~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQ------------------------------ITNIS--PLAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSC------------------------------CCCCG--GGGGCTTCCEEECCS
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCc------------------------------cCcCc--cccCCCCccEEEccC
Confidence 8887 666654 7777777777221110 00000 145566777777776
Q ss_pred eeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceee
Q 042296 729 TCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLE 808 (1446)
Q Consensus 729 n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 808 (1446)
|...+. ..+..+++|+.|++++|....+|. +. .+++|+.|++++|...+ ++.+..+++|+.|+
T Consensus 161 n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 161 AQVSDL-------------TPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISD-VSPLANTSNLFIVT 223 (308)
T ss_dssp SCCCCC-------------GGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCB-CGGGTTCTTCCEEE
T ss_pred CcCCCC-------------hhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCc-cccccCCCCCCEEE
Confidence 544321 125667788888888888777665 33 27788888888887544 33577788888888
Q ss_pred ccccc
Q 042296 809 VCRMN 813 (1446)
Q Consensus 809 L~~~~ 813 (1446)
+++|.
T Consensus 224 l~~N~ 228 (308)
T 1h6u_A 224 LTNQT 228 (308)
T ss_dssp EEEEE
T ss_pred ccCCe
Confidence 87764
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=3.9e-15 Score=180.73 Aligned_cols=237 Identities=14% Similarity=0.105 Sum_probs=144.6
Q ss_pred cCceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeec
Q 042296 569 KLHRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLN 647 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 647 (1446)
.+++|++|+|++|.++.+ |..|+.+++|++|+|++|.++.+++ ++.+++|++|+|++| .+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 344889999999988877 4678889999999999998886655 888999999999987 4666654 37888899
Q ss_pred ccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEE
Q 042296 648 NSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQ 727 (1446)
Q Consensus 648 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 727 (1446)
+++|. +..+|.. .+++|+.|.... +......+..+..+++|+.|+++
T Consensus 106 L~~N~-l~~~~~~--~l~~L~~L~L~~------------------------------N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 106 AANNN-ISRVSCS--RGQGKKNIYLAN------------------------------NKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp CCSSC-CCCEEEC--CCSSCEEEECCS------------------------------SCCCSGGGBCGGGGSSEEEEECT
T ss_pred CcCCc-CCCCCcc--ccCCCCEEECCC------------------------------CCCCCCCchhhcCCCCCCEEECC
Confidence 98887 5555532 345566652111 11122223334555666666666
Q ss_pred eeeCCCCCCCCCchhHHHHhccCC-CCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccce
Q 042296 728 WTCNTDTDGSRDLGTETRVLDMLR-PHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKH 806 (1446)
Q Consensus 728 ~n~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 806 (1446)
+|...+. .+..+. .+++|+.|++++|.+..+|... .+++|+.|+|++|.+.+..|.+..+++|+.
T Consensus 153 ~N~l~~~-----------~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~ 218 (487)
T 3oja_A 153 LNEIDTV-----------NFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (487)
T ss_dssp TSCCCEE-----------EGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred CCCCCCc-----------ChHHHhhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCccE
Confidence 5543311 112222 4566777777777666554433 266777777777766554446666777777
Q ss_pred eecccccceeEeCccccCCCCCCCCCCcceeeccccccccccccccccCccccCCcccEEEec
Q 042296 807 LEVCRMNRVKSLGSQFYGNGCPSPFPCLETLRFEDMQEWEDWIPHGFDQEAEVFPNLRELHLL 869 (1446)
Q Consensus 807 L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 869 (1446)
|++++|... .++..+ ..+++|+.|++.+++-.....+..+.. ++.|+.+.+.
T Consensus 219 L~Ls~N~l~-~lp~~l------~~l~~L~~L~l~~N~l~c~~~~~~~~~----l~~L~~l~~~ 270 (487)
T 3oja_A 219 ISLRNNKLV-LIEKAL------RFSQNLEHFDLRGNGFHCGTLRDFFSK----NQRVQTVAKQ 270 (487)
T ss_dssp EECTTSCCC-EECTTC------CCCTTCCEEECTTCCBCHHHHHHHHTT----CHHHHHHHHH
T ss_pred EEecCCcCc-ccchhh------ccCCCCCEEEcCCCCCcCcchHHHHHh----CCCCcEEecc
Confidence 777765433 343332 225677777776643221222222221 5666666664
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=7.8e-16 Score=194.78 Aligned_cols=255 Identities=19% Similarity=0.259 Sum_probs=138.2
Q ss_pred CCCcceeeccccccccccc--cccc--------cCccccCCcccEEEecCCCCCcCCCC----CCCCCccEEEEeccCC-
Q 042296 831 FPCLETLRFEDMQEWEDWI--PHGF--------DQEAEVFPNLRELHLLRCSKLQGTFP----ERLPSLEILVIQSCEE- 895 (1446)
Q Consensus 831 ~~~L~~L~l~~~~~l~~~~--~~~~--------~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~- 895 (1446)
|++|+.|.+.+++...... +..+ ......+++|++|++++|. +.+..+ ..+++|++|++++|..
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 8999999998876543321 1000 0001127889999999883 443222 2568899999988853
Q ss_pred ----hhhcCCCCCcccEEEEecccCeeeeCCCCCCceeeecccccccccccccchhccCCCcceeeecccc-cchhhhhc
Q 042296 896 ----LLVSIRRLPALCKFEISGCKKVVWRSPTDLGSQNLVVCRDISEQVFLQGPLKLQLPKLEELEIANID-ELTYIWQN 970 (1446)
Q Consensus 896 ----l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~~~-~l~~~~~~ 970 (1446)
++.....+++|++|++++|. +....+..+. ..+..+++|+.|++++|. .+..- .
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~------------------~~~~~~~~L~~L~l~~~~~~~~~~--~ 202 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESD-VDDVSGHWLS------------------HFPDTYTSLVSLNISCLASEVSFS--A 202 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGG------------------GSCTTCCCCCEEECTTCCSCCCHH--H
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHH------------------HHhhcCCcCcEEEecccCCcCCHH--H
Confidence 23334468888999988876 3221111111 122356788888888875 11110 0
Q ss_pred ccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccC------ccccCccccccCCcccEE-EeccC
Q 042296 971 ETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQG------LVKLPQTSLSLINSLKEI-GIYNC 1043 (1446)
Q Consensus 971 ~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~------l~~lp~~~~~~l~~L~~L-~l~~c 1043 (1446)
.......+++|++|++.+|..+..+ ...+..+++|+.|++.+|.. +..++. .+.++++|+.| .+.+.
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~ 276 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKL-----ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDA 276 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHH-----HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTC
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHH-----HHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCccc
Confidence 0112344678888888887655442 23445667888888765532 223333 45666777776 33321
Q ss_pred CCCcccCCC-CCCCCccEEEEeecCCcccCCccccCCCCCCccEEEEEecCCCccccC-CCCCCCccEEEEecC
Q 042296 1044 SSLVCFPEA-ALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETLKVYGCNLLTYITS-VQLPASLKHVEIEDC 1115 (1446)
Q Consensus 1044 ~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~sL~~L~l~~c 1115 (1446)
....++.. ..+++|+.|++++|......... ....+++|++|++++|-.-..++. ...+++|+.|++.+|
T Consensus 277 -~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 277 -VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK-LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS 348 (594)
T ss_dssp -CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHH-HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECS
T ss_pred -chhhHHHHHHhhCCCCEEEccCCCCCHHHHHH-HHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecC
Confidence 11222221 12567888888887722211111 112345688888887711011111 112456777777543
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=3e-16 Score=198.53 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=72.0
Q ss_pred cCCCCccEEEeccccCccccCccCC-CCCcccEEEEe-----ccCCCcccCCC------CCCcccccceecccccCccc-
Q 042296 1205 DNNTSLEVFKIGCCDNLKILPGGLH-KLRHLQEVGIW-----SCGNLVSFPEG------GLPSANLTKLQITWCDKLEA- 1271 (1446)
Q Consensus 1205 ~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~-----~c~~l~~lp~~------~~~~~~L~~L~l~~c~~l~~- 1271 (1446)
..+++|+.|.++.+......+..+. .+++|++|+++ +|..++..|.. +..+++|+.|++++ .+..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~ 446 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK 446 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHH
Confidence 3467777775554433322222222 46677777777 45556544321 23346777777765 2221
Q ss_pred ----ccccCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcceeeecCcCC
Q 042296 1272 ----LPEGMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLHD 1344 (1446)
Q Consensus 1272 ----lp~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 1344 (1446)
+...+++|+.|++++|..-....... ....++|+.|++++|......... ....+++|+.|++++|+.
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l--~~~~~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHV--LSGCDSLRKLEIRDCPFGDKALLA---NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHH--HHHCTTCCEEEEESCSCCHHHHHH---TGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHH--HhcCCCcCEEECcCCCCcHHHHHH---HHHhCCCCCEEeeeCCCC
Confidence 11236678888887765211111000 002467888888888863322111 145678888888888864
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=4.7e-14 Score=154.32 Aligned_cols=95 Identities=16% Similarity=0.241 Sum_probs=65.0
Q ss_pred eeEEEEeCCCCccccCc-cccCCCCCceeeccCcc-ccccCc-ccccccccceeeccCcccccccc-ccccCcccceeec
Q 042296 572 RLKVFSLCGYQISELPN-SVGDLRYLRYLNLSRTC-IEILPD-SINKLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHHLN 647 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~ 647 (1446)
.|++|++++|.++.+|. .|.++++|++|++++|+ ++.+|. .|.++++|++|++++|..+..+| ..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56777787777777754 67777788888888776 777764 67777788888887722466665 3467777777777
Q ss_pred ccCCCcccccCCccccccccc
Q 042296 648 NSTTNSLEEMPRGIGKLTFLQ 668 (1446)
Q Consensus 648 l~~~~~~~~~p~~i~~L~~L~ 668 (1446)
+++|. +..+|. ++.+++|+
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTD 130 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCC
T ss_pred CCCCC-Cccccc-cccccccc
Confidence 77776 555654 44444333
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=2e-14 Score=161.37 Aligned_cols=201 Identities=20% Similarity=0.126 Sum_probs=133.8
Q ss_pred ceeEEEEeCCCCccccCc-cccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccc-cccccCcccceeec
Q 042296 571 HRLKVFSLCGYQISELPN-SVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~ 647 (1446)
+.|++|++++|.++.++. .|.++++|++|+|++|.++.+|. .+.++++|++|++++|. +..+ |..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEE
Confidence 357788888888887754 77888888888888888887654 67888888888888874 4444 45678888888888
Q ss_pred ccCCCcccccCC-cccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcch-hhhhhccCCCCCceEE
Q 042296 648 NSTTNSLEEMPR-GIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGD-AKEAQLDKKKNLKVLL 725 (1446)
Q Consensus 648 l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~ 725 (1446)
+++|. +..++. .++++++|++|...... ... ..+..+..+++|+.|+
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~------------------------------l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNL------------------------------IQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSC------------------------------CCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCC-ccccCchhcccCCCCCEEECcCCc------------------------------cceecCchhhccCCCCCEEE
Confidence 88887 555554 57777777777221110 001 1123456667788888
Q ss_pred EEeeeCCCCCCCCCchhHHHHhccCCCCCCcc-eEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCc
Q 042296 726 LQWTCNTDTDGSRDLGTETRVLDMLRPHQNLE-QFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLS 803 (1446)
Q Consensus 726 l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 803 (1446)
+++|.....+. ..+..+..++.|. .|++++|....+|..... ..+|+.|++++|......+ .+..+++
T Consensus 156 Ls~N~l~~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 156 LSSNKIQSIYC--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp CCSSCCCEECG--------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred CCCCCCCcCCH--------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhccccc
Confidence 87764432210 0111222223333 788888888777766554 4589999999998665444 4688999
Q ss_pred cceeeccccc
Q 042296 804 LKHLEVCRMN 813 (1446)
Q Consensus 804 L~~L~L~~~~ 813 (1446)
|+.|++++|+
T Consensus 226 L~~L~l~~N~ 235 (276)
T 2z62_A 226 LQKIWLHTNP 235 (276)
T ss_dssp CCEEECCSSC
T ss_pred ccEEEccCCc
Confidence 9999998875
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=6.7e-14 Score=157.27 Aligned_cols=198 Identities=21% Similarity=0.131 Sum_probs=113.3
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCcccccc-CcccccccccceeeccCccccccccccccCcccceeec
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLN 647 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 647 (1446)
++++++.++++++.++.+|..+. .+|++|+|++|.++.+ |..|.++++|++|++++| .+..+|.. +.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEE
Confidence 45566666776666666666554 5667777777766655 345666777777777765 35555543 5666677777
Q ss_pred ccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEE
Q 042296 648 NSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQ 727 (1446)
Q Consensus 648 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 727 (1446)
+++|. +..+|..++.+++|++|....+ .+....+..+..+++|+.|+++
T Consensus 84 Ls~N~-l~~l~~~~~~l~~L~~L~l~~N------------------------------~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 84 LSHNQ-LQSLPLLGQTLPALTVLDVSFN------------------------------RLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp CCSSC-CSSCCCCTTTCTTCCEEECCSS------------------------------CCCCCCSSTTTTCTTCCEEECT
T ss_pred CCCCc-CCcCchhhccCCCCCEEECCCC------------------------------cCcccCHHHHcCCCCCCEEECC
Confidence 77665 5666666666666665521100 0011111224445555666655
Q ss_pred eeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCcccee
Q 042296 728 WTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHL 807 (1446)
Q Consensus 728 ~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 807 (1446)
+|.....+ ...+..+++|+.|++++|....+|..... .+++|+.|+|++|.+....+.+..+++|+.|
T Consensus 133 ~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 133 GNELKTLP-----------PGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp TSCCCCCC-----------TTTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred CCCCCccC-----------hhhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhcccccCCeE
Confidence 54333211 12344566777777777776666654432 2667777777777655332356666677777
Q ss_pred eccccc
Q 042296 808 EVCRMN 813 (1446)
Q Consensus 808 ~L~~~~ 813 (1446)
++.+|+
T Consensus 201 ~L~~Np 206 (290)
T 1p9a_G 201 FLHGNP 206 (290)
T ss_dssp ECCSCC
T ss_pred EeCCCC
Confidence 776654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=3.1e-14 Score=158.98 Aligned_cols=98 Identities=26% Similarity=0.363 Sum_probs=73.9
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccc-cccCcccceeec
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLN 647 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 647 (1446)
.+++|+.|+++++.++.++ .+..+++|++|++++|.++.+| .++++++|++|++++|. +..+|. .+.++++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEE
Confidence 5677888888888888775 4778888888888888888765 68888888888888874 555554 468888888888
Q ss_pred ccCCCcccccCCc-cccccccccc
Q 042296 648 NSTTNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~~-i~~L~~L~~L 670 (1446)
+++|. +..+|.. ++.+++|++|
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCc-CCccCHHHhccCCCCCEE
Confidence 88887 5555543 4555555555
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=6.7e-14 Score=169.82 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=133.3
Q ss_pred ccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCCCCCCccccccee
Q 042296 1183 PQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPEGGLPSANLTKLQ 1262 (1446)
Q Consensus 1183 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~ 1262 (1446)
+++|+.|+|++|......|..+..+++|+.|+|++|...+..| +..+++|++|++++| .++.+|.. ++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLVG----PSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEEC----TTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCCC----CCcCEEE
Confidence 3456666667766555555667777777777777776554444 677777777777777 45555532 5777777
Q ss_pred cccccCcccccccCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCcc-CCCCCcceeeecC
Q 042296 1263 ITWCDKLEALPEGMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGL-NRFSSLQRLSIGG 1341 (1446)
Q Consensus 1263 l~~c~~l~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l-~~l~~L~~L~l~~ 1341 (1446)
+++|..-...+..+++|+.|++++|.--...|... ..+++|+.|++++|.+....+.. + ..+++|++|++++
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDE---GCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQY 178 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCG---GGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTT
T ss_pred CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhh---cCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCC
Confidence 77765544444566777777777754332222221 13457777777777764433222 3 3567777777777
Q ss_pred cCCccccCcccccCCCcccccceecccccCCccCccCCCCCCCcceeecccCCCccccCCC-CCCCccceEeccCCch
Q 042296 1342 LHDVVSFSPQELGTTLPASLTHLWIYDFQNLECLSSVGQNLTSLVYLWLYACPKLKYFSDK-GLPTSLLQLYIKDCPL 1418 (1446)
Q Consensus 1342 ~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~c~~ 1418 (1446)
|. +..++. ...+++|++|++++| .+..+|..+..+++|+.|++++ +.+..+|.. +..++|+.|++++|+.
T Consensus 179 N~-l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 179 NF-IYDVKG----QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp SC-CCEEEC----CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred Cc-cccccc----cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCC
Confidence 54 444332 123567777777775 4556666667777777777777 356666654 3346777777777653
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=8.3e-14 Score=159.47 Aligned_cols=214 Identities=13% Similarity=0.056 Sum_probs=119.1
Q ss_pred cccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCCCCCCcccccceec
Q 042296 1184 QALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPEGGLPSANLTKLQI 1263 (1446)
Q Consensus 1184 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 1263 (1446)
++|+.|++++|......|..+..+++|+.|++++|...+..| +..+++|++|++++| .++.+|. .++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEEEC
Confidence 456666666665544445566666777777776665544333 666667777777666 3554442 256667776
Q ss_pred ccccCcccccccCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcceeeecCcC
Q 042296 1264 TWCDKLEALPEGMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLH 1343 (1446)
Q Consensus 1264 ~~c~~l~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 1343 (1446)
++|..-...+..+++|++|++++|. +..++... +...++|+.|++++|.+....+... +..+++|++|++++|.
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLD--EGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNF 180 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSC-CCSGGGBC--TGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTSC
T ss_pred CCCccCCcCccccCCCCEEECCCCC-CCCccchh--hhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCCCc
Confidence 6654433334456667777766643 22222211 1123566777777666543221110 2355667777776643
Q ss_pred CccccCcccccCCCcccccceecccccCCccCccCCCCCCCcceeecccCCCccccCCC-CCCCccceEeccCCc
Q 042296 1344 DVVSFSPQELGTTLPASLTHLWIYDFQNLECLSSVGQNLTSLVYLWLYACPKLKYFSDK-GLPTSLLQLYIKDCP 1417 (1446)
Q Consensus 1344 ~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~c~ 1417 (1446)
+..++. ...+.+|++|++++| .+..+|..+..+++|+.|++++| .++.+|.. ...++|++|++++++
T Consensus 181 -l~~~~~----~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 181 -IYDVKG----QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -CCEEEC----CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred -Cccccc----ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 333322 112456777777664 45556555666677777777764 55566653 234567777766654
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=1.6e-13 Score=153.06 Aligned_cols=195 Identities=19% Similarity=0.223 Sum_probs=112.7
Q ss_pred eEEEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCcccccccccc-ccCcccceeecccC
Q 042296 573 LKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNST 650 (1446)
Q Consensus 573 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~ 650 (1446)
.+.++++++.++.+|..+. .+|++|+|++|+++.+|. .|.++++|++|++++| .+..+|.. |.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4567777777777766554 567777777777776654 5677777777777776 35556544 46677777777777
Q ss_pred CCcccccCCc-ccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEee
Q 042296 651 TNSLEEMPRG-IGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWT 729 (1446)
Q Consensus 651 ~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 729 (1446)
|. +..+|.. ++.+++|++|..... ......+..+..+++|+.|++++|
T Consensus 95 n~-l~~~~~~~~~~l~~L~~L~l~~n------------------------------~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 95 NK-LQALPIGVFDQLVNLAELRLDRN------------------------------QLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp SC-CCCCCTTTTTTCSSCCEEECCSS------------------------------CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred Cc-CCcCCHhHcccccCCCEEECCCC------------------------------ccCeeCHHHhCcCcCCCEEECCCC
Confidence 76 5555533 455566655521100 001111122444556666666655
Q ss_pred eCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccceee
Q 042296 730 CNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLKHLE 808 (1446)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 808 (1446)
.....+ ...+..+++|+.|++++|....+|..... .+++|+.|++++|......+ .+..+++|+.|+
T Consensus 144 ~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 144 ELQSLP-----------KGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp CCCCCC-----------TTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCccC-----------HhHccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 433211 12245566777777777766666553221 26677777777776544333 366677777777
Q ss_pred ccccc
Q 042296 809 VCRMN 813 (1446)
Q Consensus 809 L~~~~ 813 (1446)
+++|+
T Consensus 212 l~~N~ 216 (270)
T 2o6q_A 212 LQENP 216 (270)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 76654
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=3.2e-13 Score=156.88 Aligned_cols=94 Identities=23% Similarity=0.324 Sum_probs=70.7
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccccc-cccCcccceeec-ccC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLN-NST 650 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~-l~~ 650 (1446)
++++.++++++++|..+. .++++|+|++|+|+.+|. .|.+|++|++|+|++|...+.+|. .|.+|++|+++. +++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 467888888888888773 688999999999998886 578899999999998865566765 477888877644 444
Q ss_pred CCcccccC-Cccccccccccc
Q 042296 651 TNSLEEMP-RGIGKLTFLQTL 670 (1446)
Q Consensus 651 ~~~~~~~p-~~i~~L~~L~~L 670 (1446)
|. +..+| ..++.+++|++|
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 90 NN-LLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TT-CCEECTTSBCCCTTCCEE
T ss_pred Cc-ccccCchhhhhccccccc
Confidence 44 66665 346777777777
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=8.5e-14 Score=156.42 Aligned_cols=175 Identities=19% Similarity=0.107 Sum_probs=133.6
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeeccc
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNS 649 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 649 (1446)
+.+++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. +.+++|++|++++| .+..+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence 5778889999888877 56788889999999999988888764 78888999999887 577888888888899999998
Q ss_pred CCCcccccC-CcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEe
Q 042296 650 TTNSLEEMP-RGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQW 728 (1446)
Q Consensus 650 ~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 728 (1446)
+|. +..+| ..++.+++|++|....+ .........+..+++|+.|+++.
T Consensus 109 ~N~-l~~l~~~~~~~l~~L~~L~L~~N------------------------------~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 109 FNR-LTSLPLGALRGLGELQELYLKGN------------------------------ELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp SSC-CCCCCSSTTTTCTTCCEEECTTS------------------------------CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCc-CcccCHHHHcCCCCCCEEECCCC------------------------------CCCccChhhcccccCCCEEECCC
Confidence 887 66776 44788888888722110 11111223356678888888887
Q ss_pred eeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCC
Q 042296 729 TCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHK 791 (1446)
Q Consensus 729 n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 791 (1446)
|.....+ ...+..+++|+.|++++|....+|.++.. ..+|+.|+|++|..
T Consensus 158 N~l~~l~-----------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~--~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 158 NNLTELP-----------AGLLNGLENLDTLLLQENSLYTIPKGFFG--SHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCSCCC-----------TTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCCCSEEECCSCCB
T ss_pred CcCCccC-----------HHHhcCcCCCCEEECCCCcCCccChhhcc--cccCCeEEeCCCCc
Confidence 7554322 12356788999999999999999998876 77999999999974
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=8.5e-15 Score=170.10 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=80.1
Q ss_pred hhcC--ceeEEEEeCCCCccccCccccCCCCCceeeccCccccc--cCcccccccccceeeccCccccccccccccCccc
Q 042296 567 LLKL--HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEI--LPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIK 642 (1446)
Q Consensus 567 ~~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 642 (1446)
+..+ +.+++|++++|.+...+..+..+++|++|+|++|.+.. +|..+.++++|++|++++|......|..++.+++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 3345 78889999999888776667788999999999998873 7788888999999999998644567778888999
Q ss_pred ceeecccCCCccc--ccCCccccccccccc
Q 042296 643 LHHLNNSTTNSLE--EMPRGIGKLTFLQTL 670 (1446)
Q Consensus 643 L~~L~l~~~~~~~--~~p~~i~~L~~L~~L 670 (1446)
|++|++++|..+. .+|..++++++|++|
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 9999999884344 245555566666665
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=153.64 Aligned_cols=205 Identities=17% Similarity=0.077 Sum_probs=145.1
Q ss_pred cCceeEEEEeCCCCccc-cCccc--cCCCCCceeeccCccccc-cC----cccccccccceeeccCccccccccccccCc
Q 042296 569 KLHRLKVFSLCGYQISE-LPNSV--GDLRYLRYLNLSRTCIEI-LP----DSINKLYNLHTLLLEDCDRLKKLCADMGNL 640 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~-lp~~i--~~L~~Lr~L~L~~~~i~~-lp----~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 640 (1446)
.+++|++|++++|.+.. .|..+ ..+.+|++|+|++|.++. .| ..+..+++|++|++++|......|..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 56779999999999874 57777 899999999999999984 33 345679999999999986444445779999
Q ss_pred ccceeecccCCCcccc--cC--CcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhcc
Q 042296 641 IKLHHLNNSTTNSLEE--MP--RGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLD 716 (1446)
Q Consensus 641 ~~L~~L~l~~~~~~~~--~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 716 (1446)
++|++|++++|...+. ++ ..++.+++|++|....+ .+ ..........+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N------~l---------------------~~l~~~~~~l~~ 221 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT------GM---------------------ETPTGVCAALAA 221 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS------CC---------------------CCHHHHHHHHHH
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC------CC---------------------CchHHHHHHHHh
Confidence 9999999999973321 33 23478888888832111 00 011111122245
Q ss_pred CCCCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCC
Q 042296 717 KKKNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLP 796 (1446)
Q Consensus 717 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 796 (1446)
.+++|++|++++|...+.... ....+..+++|+.|++++|.++.+|.++ +++|+.|+|++|...+ +|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~--------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~-~~ 288 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNP--------SAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNR-AP 288 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCS--------CCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCS-CC
T ss_pred cCCCCCEEECCCCCCCccchh--------hHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCC-Cc
Confidence 678899999988766532100 0122233478999999999888888776 3689999999887654 46
Q ss_pred CCCCcCccceeeccccc
Q 042296 797 SIGKLLSLKHLEVCRMN 813 (1446)
Q Consensus 797 ~l~~l~~L~~L~L~~~~ 813 (1446)
.+..+++|+.|++++|+
T Consensus 289 ~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 289 QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTSCCCCSCEECSSTT
T ss_pred hhhhCCCccEEECcCCC
Confidence 67788888888888765
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=2e-12 Score=144.99 Aligned_cols=228 Identities=20% Similarity=0.166 Sum_probs=127.9
Q ss_pred ccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccC-CCCCCcccccce
Q 042296 1183 PQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFP-EGGLPSANLTKL 1261 (1446)
Q Consensus 1183 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~~~~L~~L 1261 (1446)
+++|+.|++++|......+..+.++++|+.|++++|......+..+.++++|++|++++|. ++.++ ..+..+++|++|
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence 3456677777665444444466777777777777775555445567777777777777774 44443 455566777777
Q ss_pred ecccccCccccc---ccCCccceEeeCCCCCcc-cccccCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcc--
Q 042296 1262 QITWCDKLEALP---EGMNSLRELNIGGLASMV-CFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQ-- 1335 (1446)
Q Consensus 1262 ~l~~c~~l~~lp---~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~-- 1335 (1446)
++++|..-...+ ..+++|++|++++|.--. .+|... ...++|+.|++++|...... ...+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~---~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~l 178 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF---SNLTNLEHLDLSSNKIQSIY----CTDLRVLHQMPLL 178 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG---GGCTTCCEEECCSSCCCEEC----GGGGHHHHTCTTC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh---ccCCCCCEEECCCCCCCcCC----HHHhhhhhhcccc
Confidence 777654322211 144567777776643211 122222 13357777777777653321 12244444554
Q ss_pred --eeeecCcCCccccCcccccCCCcccccceecccccCCccCccCC-CCCCCcceeecccCCCccccCCCCCCCccceEe
Q 042296 1336 --RLSIGGLHDVVSFSPQELGTTLPASLTHLWIYDFQNLECLSSVG-QNLTSLVYLWLYACPKLKYFSDKGLPTSLLQLY 1412 (1446)
Q Consensus 1336 --~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~ 1412 (1446)
+|++++| .+..++...+ ...+|++|+++++. ++.+|... .++++|+.|++++++--
T Consensus 179 ~l~L~ls~n-~l~~~~~~~~---~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~---------------- 237 (276)
T 2z62_A 179 NLSLDLSLN-PMNFIQPGAF---KEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD---------------- 237 (276)
T ss_dssp CEEEECCSS-CCCEECTTSS---CSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBC----------------
T ss_pred ceeeecCCC-cccccCcccc---CCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccc----------------
Confidence 6777774 3444443222 12267777777753 55666543 66777777777764321
Q ss_pred ccCCch-------hHHhhccCCCCccccccccCee
Q 042296 1413 IKDCPL-------IEEKCRKDQGQYWHLLTHIPDV 1440 (1446)
Q Consensus 1413 i~~c~~-------L~~~~~~~~g~~~~~~~~~~~~ 1440 (1446)
.+|+. +.+.+.+..|..|-..++.|..
T Consensus 238 -c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~~~~~ 271 (276)
T 2z62_A 238 -CSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVR 271 (276)
T ss_dssp -CCTTTTHHHHHHHHHTGGGBCSCCBBTTTCCBGG
T ss_pred -ccCCchHHHHHHHHhcccccCCCceeeCCCCccc
Confidence 13443 3344555666666666665543
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=1.6e-12 Score=143.10 Aligned_cols=172 Identities=18% Similarity=0.203 Sum_probs=118.7
Q ss_pred ceeEEEEeCCCCccccCccccCCCCCceeeccCccccccC-cccccccccceeeccCccccccc-cccccCcccceeecc
Q 042296 571 HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNN 648 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l 648 (1446)
...++++++++.++.+|..+. .+|++|+|++|.++.++ ..++++++|++|++++|. +..+ |..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEEC
Confidence 346788999999999998776 68999999999998775 468999999999999985 5444 455889999999999
Q ss_pred cCCCcccccCC-cccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEE
Q 042296 649 STTNSLEEMPR-GIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQ 727 (1446)
Q Consensus 649 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 727 (1446)
++|. +..+|. .++.+++|++| +++
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L------------------------------------------------------~L~ 115 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKL------------------------------------------------------YLG 115 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEE------------------------------------------------------ECC
T ss_pred CCCc-ccccChhHhcccCCCCEE------------------------------------------------------EcC
Confidence 9987 666653 34555555555 332
Q ss_pred eeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCc-ccCcCccCCceEEEeeCCCCCCCCC-CCCCcCccc
Q 042296 728 WTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPI-WLGDSYFSNLVTLKFQNCHKCTSLP-SIGKLLSLK 805 (1446)
Q Consensus 728 ~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 805 (1446)
+|.....+ ...+..+++|+.|++++|.+..+|. .+.. +++|+.|+|++|......+ .+..+++|+
T Consensus 116 ~N~l~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 116 GNQLKSLP-----------SGVFDRLTKLKELRLNTNQLQSIPAGAFDK--LTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp SSCCCCCC-----------TTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCcCCCcC-----------hhHhccCCcccEEECcCCcCCccCHHHcCc--CcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 22221110 1123445666677777776666655 3333 6777777777777655444 567777788
Q ss_pred eeeccccc
Q 042296 806 HLEVCRMN 813 (1446)
Q Consensus 806 ~L~L~~~~ 813 (1446)
.|++++|+
T Consensus 183 ~L~l~~N~ 190 (251)
T 3m19_A 183 TITLFGNQ 190 (251)
T ss_dssp EEECCSCC
T ss_pred EEEeeCCc
Confidence 88877764
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=3e-13 Score=153.75 Aligned_cols=172 Identities=22% Similarity=0.216 Sum_probs=131.5
Q ss_pred hhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCccccee
Q 042296 566 RLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHH 645 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 645 (1446)
.+..+++|++|++++|.++.+|. +..+++|++|+|++|.++.+| .+.++++|++|++++| .+..+|. +..+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCE
Confidence 45578899999999999998876 889999999999999998886 5889999999999998 4677765 889999999
Q ss_pred ecccCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEE
Q 042296 646 LNNSTTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLL 725 (1446)
Q Consensus 646 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 725 (1446)
|++++|. +..+|. ++.+++|+.|....+ ...... .+..+++|+.|+
T Consensus 134 L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n------------------------------~l~~~~--~l~~l~~L~~L~ 179 (308)
T 1h6u_A 134 LYLDLNQ-ITNISP-LAGLTNLQYLSIGNA------------------------------QVSDLT--PLANLSKLTTLK 179 (308)
T ss_dssp EECCSSC-CCCCGG-GGGCTTCCEEECCSS------------------------------CCCCCG--GGTTCTTCCEEE
T ss_pred EECCCCc-cCcCcc-ccCCCCccEEEccCC------------------------------cCCCCh--hhcCCCCCCEEE
Confidence 9999997 677665 777788877732111 011111 156678888888
Q ss_pred EEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCC
Q 042296 726 LQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHK 791 (1446)
Q Consensus 726 l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 791 (1446)
+++|...+. ..+..+++|+.|++++|....++. +.. +++|+.|++++|..
T Consensus 180 l~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~~~~~-l~~--l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 180 ADDNKISDI-------------SPLASLPNLIEVHLKNNQISDVSP-LAN--TSNLFIVTLTNQTI 229 (308)
T ss_dssp CCSSCCCCC-------------GGGGGCTTCCEEECTTSCCCBCGG-GTT--CTTCCEEEEEEEEE
T ss_pred CCCCccCcC-------------hhhcCCCCCCEEEccCCccCcccc-ccC--CCCCCEEEccCCee
Confidence 887655422 125667889999999998887774 433 88999999999875
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=7.1e-13 Score=149.11 Aligned_cols=168 Identities=20% Similarity=0.278 Sum_probs=117.1
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
.+++|+.|++++|.+..+|. +..+++|++|+|++|+++.+|. ++++++|++|++++| .+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 56788899999999988864 8889999999999999998877 889999999999987 4666654 888999999999
Q ss_pred cCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEe
Q 042296 649 STTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQW 728 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 728 (1446)
++|. +..++ .++.+++|+.| ++++
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L------------------------------------------------------~l~~ 143 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESL------------------------------------------------------YLGN 143 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEE------------------------------------------------------ECCS
T ss_pred CCCc-CCCCh-hhcCCCCCCEE------------------------------------------------------EccC
Confidence 9887 55553 45555555555 2222
Q ss_pred eeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceee
Q 042296 729 TCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLE 808 (1446)
Q Consensus 729 n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 808 (1446)
|.... ...+..+++|+.|++++|....++. +.. +++|+.|++++|... .++.+..+++|+.|+
T Consensus 144 n~l~~-------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~--l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~ 206 (291)
T 1h6t_A 144 NKITD-------------ITVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHIS-DLRALAGLKNLDVLE 206 (291)
T ss_dssp SCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCC-BCGGGTTCTTCSEEE
T ss_pred CcCCc-------------chhhccCCCCCEEEccCCccccchh-hcC--CCccCEEECCCCcCC-CChhhccCCCCCEEE
Confidence 21110 0123344556666666666555544 332 677777777777543 355677777788888
Q ss_pred ccccc
Q 042296 809 VCRMN 813 (1446)
Q Consensus 809 L~~~~ 813 (1446)
+++|.
T Consensus 207 l~~n~ 211 (291)
T 1h6t_A 207 LFSQE 211 (291)
T ss_dssp EEEEE
T ss_pred CcCCc
Confidence 77654
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=8.1e-12 Score=145.01 Aligned_cols=218 Identities=19% Similarity=0.144 Sum_probs=123.0
Q ss_pred CCCcCCceeecccCccccccc-CCCCccccceeeeccCCCchhhhh-hhcCCCCccEEEeccccCcccc-CccCCCCCcc
Q 042296 1158 LPDSLEHLEVGICSKLKFLSC-SGNLPQALKFICVFRCSKLESIAE-RLDNNTSLEVFKIGCCDNLKIL-PGGLHKLRHL 1234 (1446)
Q Consensus 1158 ~~~~L~~L~l~~c~~L~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L 1234 (1446)
++.++++|+++++ +++.++. .+..+++|+.|+|++|...+.+|. .+.+++++.++.+.+++.+..+ |..|..+++|
T Consensus 28 l~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 28 LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CCTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred cCCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 4566777777653 4555554 345566777777777766555543 4566666665444444444443 4556677777
Q ss_pred cEEEEeccCCCcccCC-CCCCcccccceecccccCccccccc----C-CccceEeeCCCCCcccccccCcCCCCCCCcce
Q 042296 1235 QEVGIWSCGNLVSFPE-GGLPSANLTKLQITWCDKLEALPEG----M-NSLRELNIGGLASMVCFPVEADGAMFPSNLQS 1308 (1446)
Q Consensus 1235 ~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~c~~l~~lp~~----l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~ 1308 (1446)
++|++++| .++.+|. .+....++..|++.++..+..+|.. + ..++.|+++++ .+..++.... ...+|+.
T Consensus 107 ~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f---~~~~L~~ 181 (350)
T 4ay9_X 107 QYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAF---NGTQLDE 181 (350)
T ss_dssp CEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSS---TTEEEEE
T ss_pred cccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhc---cccchhH
Confidence 77777666 3454443 2334455666666666666665542 1 24566666553 3444443321 1235666
Q ss_pred EEEccCCCcchhhhcccCccCCCCCcceeeecCcCCccccCcccccCCCcccccceecccccCCccCccCCCCCCCccee
Q 042296 1309 LDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLHDVVSFSPQELGTTLPASLTHLWIYDFQNLECLSSVGQNLTSLVYL 1388 (1446)
Q Consensus 1309 L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~~~~~~l~~L~~L 1388 (1446)
|++++++.+..++. ..|..+++|++|++++| .++.+|. ..+.+|++|.+.++++++.+| .+.+|++|+.+
T Consensus 182 l~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~N-~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l 251 (350)
T 4ay9_X 182 LNLSDNNNLEELPN---DVFHGASGPVILDISRT-RIHSLPS-----YGLENLKKLRARSTYNLKKLP-TLEKLVALMEA 251 (350)
T ss_dssp EECTTCTTCCCCCT---TTTTTEECCSEEECTTS-CCCCCCS-----SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEE
T ss_pred HhhccCCcccCCCH---HHhccCcccchhhcCCC-CcCccCh-----hhhccchHhhhccCCCcCcCC-CchhCcChhhC
Confidence 66666555554432 23566666666666664 4555554 223556666666666666666 35566666666
Q ss_pred ecc
Q 042296 1389 WLY 1391 (1446)
Q Consensus 1389 ~l~ 1391 (1446)
++.
T Consensus 252 ~l~ 254 (350)
T 4ay9_X 252 SLT 254 (350)
T ss_dssp ECS
T ss_pred cCC
Confidence 664
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=2.1e-12 Score=143.96 Aligned_cols=178 Identities=23% Similarity=0.221 Sum_probs=127.6
Q ss_pred ceeEEEEeCCCCccccC-ccccCCCCCceeeccCccccccCcc-cccccccceeeccCccccccccc-cccCcccceeec
Q 042296 571 HRLKVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEILPDS-INKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 647 (1446)
..|+.|++++|.++.+| ..|.++++|++|+|++|.++.+|.. +.++++|++|++++|. +..+|. .+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEE
Confidence 45788888888888875 4688888888888888888888765 4778888888888874 666654 467888888888
Q ss_pred ccCCCcccccCC-cccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEE
Q 042296 648 NSTTNSLEEMPR-GIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLL 726 (1446)
Q Consensus 648 l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 726 (1446)
+++|. +..+|. .++.+++|++|..... .........+..+++|+.|++
T Consensus 116 l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n------------------------------~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 116 LDRNQ-LKSLPPRVFDSLTKLTYLSLGYN------------------------------ELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSS------------------------------CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCc-cCeeCHHHhCcCcCCCEEECCCC------------------------------cCCccCHhHccCCcccceeEe
Confidence 88887 566654 4677788877732111 111112223566788888888
Q ss_pred EeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCC
Q 042296 727 QWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKC 792 (1446)
Q Consensus 727 ~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 792 (1446)
+.|.....+ ...+..+++|+.|++++|....+|..... .+++|+.|++++|...
T Consensus 165 ~~n~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 165 YNNQLKRVP-----------EGAFDKLTELKTLKLDNNQLKRVPEGAFD-SLEKLKMLQLQENPWD 218 (270)
T ss_dssp CSSCCSCCC-----------TTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCBC
T ss_pred cCCcCcEeC-----------hhHhccCCCcCEEECCCCcCCcCCHHHhc-cccCCCEEEecCCCee
Confidence 876554321 12466788999999999998888775332 3889999999999753
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.35 E-value=9.5e-12 Score=148.88 Aligned_cols=278 Identities=14% Similarity=0.069 Sum_probs=164.5
Q ss_pred eEccCCchHHHHHHHHHcccchh---ccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC--
Q 042296 190 VYGMGGLGKTTLAQLVYNDARLQ---DHFD-LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS-- 263 (1446)
Q Consensus 190 i~G~gG~GKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-- 263 (1446)
|+|++|+||||||+++++..... ..|+ .++|+.+....+...++..++.+++........+..++...+.+.+.
T Consensus 57 i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 136 (412)
T 1w5s_A 57 SIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE 136 (412)
T ss_dssp CTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 39999999999999999743211 0122 35777776777889999999999976543223445666666766664
Q ss_pred CceEEEEEECCCCC------ChhhHHHhcccccCC---C--CCcEEEEEccChHHHHhhC--------C-CCceecCCCC
Q 042296 264 QKKFLLVLDDVWNE------NYNDWIDLSRPFEAG---A--PGSKIVVTTRNQAVVAIMG--------T-VPAYPLKELS 323 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~------~~~~~~~~~~~l~~~---~--~gs~iivTtR~~~v~~~~~--------~-~~~~~l~~L~ 323 (1446)
+++++||+||+|.- ....+..+...+... + .+..||+||+...+...+. . ...+.+.+++
T Consensus 137 ~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~ 216 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK 216 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC
T ss_pred CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCC
Confidence 67999999999652 123333333333211 2 3455888888665432211 1 1238999999
Q ss_pred hHhHHHHHHhhc---cCCCCCCCChhHHHHHHHHHHHhC------CchhHHHHHHhh-h--c---CC--CChhHHHHHHh
Q 042296 324 DEDCLNVFTQHS---LGTRDFNMHKSLEEIGKKIVIKCN------GLPLAAKTLGGL-L--R---GK--TDQRDWEDVLN 386 (1446)
Q Consensus 324 ~~~~~~lf~~~a---~~~~~~~~~~~~~~~~~~i~~~c~------glPlai~~~~~~-L--~---~~--~~~~~w~~~l~ 386 (1446)
.++++++|...+ +... ... .+.+..|++.++ |.|..+..+... . . .. -+.+.+...+.
T Consensus 217 ~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 217 SRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp HHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 999999997653 2211 111 456778999999 999655544332 1 1 11 12333443332
Q ss_pred ccccCCCCcccccchhhhhhhccCCHHHHHHHhhhccCC--CCceeChHHHHHHHH--h---CCCCCCCCCCCCHHHHHH
Q 042296 387 CKIWDLPEERCDILPALKVSYYYLSPRLKQCFTYCSLLP--KDYEFKEEEIILLWI--A---VGFLDQEDNGRESEDLGH 459 (1446)
Q Consensus 387 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~i~~~~li~~w~--a---~g~i~~~~~~~~~~~~~~ 459 (1446)
.... ...+.-.+..||++.+.++..++.+. .+..++...+...+. + .|. .........
T Consensus 292 ~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 356 (412)
T 1w5s_A 292 ENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV------KPRGYTQYH 356 (412)
T ss_dssp HC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC------CCCCHHHHH
T ss_pred HHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC------CCCCHHHHH
Confidence 1100 23345567889999999998888653 223455555444332 2 121 111234566
Q ss_pred HHHHHHHhcCcccccc---CCCCceEehhhH
Q 042296 460 MFFKELHSRSLFQKSS---NDTLRFVMHDLV 487 (1446)
Q Consensus 460 ~~~~~L~~~~ll~~~~---~~~~~~~mH~lv 487 (1446)
.++++|.+.++|.... +...+|++|++.
T Consensus 357 ~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 357 IYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 7899999999998743 223345555544
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=2e-13 Score=158.55 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=37.1
Q ss_pred cCceeEEEEeCCCCccc--cCccccCCCCCceeeccCcccc-ccCcccccccccceeeccCccccc--cccccccCcccc
Q 042296 569 KLHRLKVFSLCGYQISE--LPNSVGDLRYLRYLNLSRTCIE-ILPDSINKLYNLHTLLLEDCDRLK--KLCADMGNLIKL 643 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~--lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L 643 (1446)
.+++|++|++++|.++. +|..+..+++|++|+|++|.++ ..|..++++++|++|++++|..+. .+|..+.++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 44444444444444431 3444444444444444444444 334444444444444444442232 133334444444
Q ss_pred eeecccCC
Q 042296 644 HHLNNSTT 651 (1446)
Q Consensus 644 ~~L~l~~~ 651 (1446)
++|++++|
T Consensus 171 ~~L~l~~~ 178 (336)
T 2ast_B 171 DELNLSWC 178 (336)
T ss_dssp CEEECCCC
T ss_pred CEEcCCCC
Confidence 44444444
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=8.5e-14 Score=164.73 Aligned_cols=90 Identities=22% Similarity=0.256 Sum_probs=67.3
Q ss_pred HHHhhhcCceeEEEEeCCCCccc-----cCccccCCCCCceeeccCcccc----ccCccc-------ccccccceeeccC
Q 042296 563 ILQRLLKLHRLKVFSLCGYQISE-----LPNSVGDLRYLRYLNLSRTCIE----ILPDSI-------NKLYNLHTLLLED 626 (1446)
Q Consensus 563 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~ 626 (1446)
++..+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34455577889999999988764 4455778889999999887554 334444 6788999999998
Q ss_pred ccccc----cccccccCcccceeecccCCC
Q 042296 627 CDRLK----KLCADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 627 ~~~~~----~lp~~i~~L~~L~~L~l~~~~ 652 (1446)
|.... .+|..+.++++|++|++++|.
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 85333 377778888999999998887
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=2.2e-12 Score=135.89 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=74.3
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
.+++|+.|++++|.++.+| .+..+++|++|++++|.++.+| .+..+++|++|++++|......|..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 5677888899998888888 6888889999999988777665 6888889999999888544456778888888888888
Q ss_pred cCCCcccccCCccccccccccc
Q 042296 649 STTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
++|......|..++++++|++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEE
T ss_pred cCCccCcHhHHHHhhCCCCCEE
Confidence 8887322334444444444333
No 99
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.31 E-value=1.3e-11 Score=137.73 Aligned_cols=207 Identities=11% Similarity=0.006 Sum_probs=122.4
Q ss_pred ccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCCCcc
Q 042296 1006 LSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTSLE 1085 (1446)
Q Consensus 1006 ~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~ 1085 (1446)
.+++|+.|++++| .+..++ .+..+++|++|++++| .+..++....+++|+.|++++|...+..+..+.. +++|+
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~--~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQ--GIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQLQSLPNGVFDK--LTNLK 112 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCT--TGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCC
T ss_pred cccceeeeeeCCC-Cccccc--ccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCccCccChhHhcC--CcCCC
Confidence 4567777777776 455555 3667777888888775 3555554555677777777777644333322222 24477
Q ss_pred EEEEEecCCCccccCCCCCCCccEEEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCCcCCce
Q 042296 1086 TLKVYGCNLLTYITSVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHL 1165 (1446)
Q Consensus 1086 ~L~l~~~~~l~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 1165 (1446)
+|++++|......+. .+..+++|+.|++++|. +
T Consensus 113 ~L~L~~n~l~~~~~~------------------------------~~~~l~~L~~L~L~~n~-l---------------- 145 (272)
T 3rfs_A 113 ELVLVENQLQSLPDG------------------------------VFDKLTNLTYLNLAHNQ-L---------------- 145 (272)
T ss_dssp EEECTTSCCCCCCTT------------------------------TTTTCTTCCEEECCSSC-C----------------
T ss_pred EEECCCCcCCccCHH------------------------------HhccCCCCCEEECCCCc-c----------------
Confidence 777766654321111 11222333344333331 1
Q ss_pred eecccCccccccc-CCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCC
Q 042296 1166 EVGICSKLKFLSC-SGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGN 1244 (1446)
Q Consensus 1166 ~l~~c~~L~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~ 1244 (1446)
+.++. ....+++|+.|++++|......+..+..+++|+.|++++|...+..|..+..+++|++|++++|+.
T Consensus 146 --------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 146 --------QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp --------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --------CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 11111 112234566666666654444444567888888888888877666666678888899999988864
Q ss_pred CcccCCCCCCcccccceecccccCcccccccCCccc
Q 042296 1245 LVSFPEGGLPSANLTKLQITWCDKLEALPEGMNSLR 1280 (1446)
Q Consensus 1245 l~~lp~~~~~~~~L~~L~l~~c~~l~~lp~~l~~L~ 1280 (1446)
... +++|+.|+++.+...+.+|..+.++.
T Consensus 218 ~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 218 DCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 433 34788888888777777877655443
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=2.5e-12 Score=158.80 Aligned_cols=169 Identities=20% Similarity=0.273 Sum_probs=111.3
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
.+.+|+.|++++|.+..+| .+..+++|++|+|++|.+..+|. ++++++|++|+|++| .+..+| .+..+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 5667777788888777776 47778888888888888777766 778888888888877 455555 5777888888888
Q ss_pred cCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEe
Q 042296 649 STTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQW 728 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 728 (1446)
++|. +..+| .++.|++|+.| +|+.
T Consensus 117 s~N~-l~~l~-~l~~l~~L~~L------------------------------------------------------~Ls~ 140 (605)
T 1m9s_A 117 EHNG-ISDIN-GLVHLPQLESL------------------------------------------------------YLGN 140 (605)
T ss_dssp TTSC-CCCCG-GGGGCTTCSEE------------------------------------------------------ECCS
T ss_pred cCCC-CCCCc-cccCCCccCEE------------------------------------------------------ECCC
Confidence 7776 44443 34444444444 3333
Q ss_pred eeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceee
Q 042296 729 TCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLE 808 (1446)
Q Consensus 729 n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 808 (1446)
|.... +..+..+++|+.|+|++|.+..++. +.. +++|+.|+|++|.+.. ++.+..+++|+.|+
T Consensus 141 N~l~~-------------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~--l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 141 NKITD-------------ITVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHISD-LRALAGLKNLDVLE 203 (605)
T ss_dssp SCCCC-------------CGGGGSCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCCB-CGGGTTCTTCSEEE
T ss_pred CccCC-------------chhhcccCCCCEEECcCCcCCCchh-hcc--CCCCCEEECcCCCCCC-ChHHccCCCCCEEE
Confidence 22211 0223445566666666666655544 333 7778888888776543 46777888888888
Q ss_pred cccccc
Q 042296 809 VCRMNR 814 (1446)
Q Consensus 809 L~~~~~ 814 (1446)
|++|..
T Consensus 204 L~~N~l 209 (605)
T 1m9s_A 204 LFSQEC 209 (605)
T ss_dssp CCSEEE
T ss_pred ccCCcC
Confidence 877653
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=9.9e-12 Score=141.72 Aligned_cols=55 Identities=18% Similarity=0.075 Sum_probs=25.8
Q ss_pred ccccceecccccCCccCccCCCCCCCcceeecccCCCccccCCCCCCCccceEeccCCc
Q 042296 1359 ASLTHLWIYDFQNLECLSSVGQNLTSLVYLWLYACPKLKYFSDKGLPTSLLQLYIKDCP 1417 (1446)
Q Consensus 1359 ~~L~~L~~~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 1417 (1446)
++|++|++++| .++.+|..+. ++|+.|++++| +++.+|.....++|++|++++++
T Consensus 251 ~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 251 SALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred CcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 34444444443 3334444332 45555555552 44444433333555555555554
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=3.5e-12 Score=155.29 Aligned_cols=178 Identities=18% Similarity=0.184 Sum_probs=131.9
Q ss_pred ceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecccC
Q 042296 571 HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNST 650 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 650 (1446)
.+|++|+|++|.++.+|..+. .+|++|+|++|+|+.+| ..+++|++|++++| .+..+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 389999999999999998774 79999999999999999 56899999999998 5777988 766 999999999
Q ss_pred CCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeee
Q 042296 651 TNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTC 730 (1446)
Q Consensus 651 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 730 (1446)
|. +..+|. .+++|+.|....+ .+..+ +. .+++|+.|++++|.
T Consensus 130 N~-l~~lp~---~l~~L~~L~Ls~N------------------------~l~~l-------p~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 130 NQ-LTMLPE---LPALLEYINADNN------------------------QLTML-------PE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SC-CSCCCC---CCTTCCEEECCSS------------------------CCSCC-------CC---CCTTCCEEECCSSC
T ss_pred Cc-CCCCCC---cCccccEEeCCCC------------------------ccCcC-------CC---cCCCcCEEECCCCC
Confidence 98 777887 5677777722111 01110 11 34678888888775
Q ss_pred CCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCc-------eEEEeeCCCCCCCCC-CCCCcC
Q 042296 731 NTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNL-------VTLKFQNCHKCTSLP-SIGKLL 802 (1446)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~-~l~~l~ 802 (1446)
....+ . +. ++|+.|++++|.++.+|. +.. +| +.|+|++|.+.. +| .+..++
T Consensus 172 L~~lp------------~-l~--~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~ 230 (571)
T 3cvr_A 172 LTFLP------------E-LP--ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRITH-IPENILSLD 230 (571)
T ss_dssp CSCCC------------C-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCC-CCGGGGGSC
T ss_pred CCCcc------------h-hh--CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCccee-cCHHHhcCC
Confidence 54321 1 22 788899999998888887 432 56 888998887654 55 577788
Q ss_pred ccceeeccccccee
Q 042296 803 SLKHLEVCRMNRVK 816 (1446)
Q Consensus 803 ~L~~L~L~~~~~l~ 816 (1446)
+|+.|++++|+..+
T Consensus 231 ~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 231 PTCTIILEDNPLSS 244 (571)
T ss_dssp TTEEEECCSSSCCH
T ss_pred CCCEEEeeCCcCCC
Confidence 88888888876443
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=1.6e-12 Score=143.71 Aligned_cols=167 Identities=20% Similarity=0.218 Sum_probs=111.1
Q ss_pred cCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecc
Q 042296 569 KLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNN 648 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 648 (1446)
.+..+..++++++.++.++ .+..+.+|++|++++|.++.+| .+..+++|++|++++| .+..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 4455566667777777776 5677788888888888888777 5778888888888877 4666665 778888888888
Q ss_pred cCCCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEe
Q 042296 649 STTNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQW 728 (1446)
Q Consensus 649 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 728 (1446)
++|. +..+|.... ++ |+.|++++
T Consensus 93 ~~N~-l~~l~~~~~--~~------------------------------------------------------L~~L~L~~ 115 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--AC------------------------------------------------------LSRLFLDN 115 (263)
T ss_dssp CSSC-CSCCTTCCC--SS------------------------------------------------------CCEEECCS
T ss_pred CCCc-cCCcCcccc--Cc------------------------------------------------------ccEEEccC
Confidence 8776 555543111 23 33333333
Q ss_pred eeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceee
Q 042296 729 TCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLE 808 (1446)
Q Consensus 729 n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 808 (1446)
|.... ++.+..+++|+.|++++|....+| .+.. +++|+.|++++|...+. +.+..+++|+.|+
T Consensus 116 N~l~~-------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~--l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 116 NELRD-------------TDSLIHLKNLEILSIRNNKLKSIV-MLGF--LSKLEVLDLHGNEITNT-GGLTRLKKVNWID 178 (263)
T ss_dssp SCCSB-------------SGGGTTCTTCCEEECTTSCCCBCG-GGGG--CTTCCEEECTTSCCCBC-TTSTTCCCCCEEE
T ss_pred CccCC-------------ChhhcCcccccEEECCCCcCCCCh-HHcc--CCCCCEEECCCCcCcch-HHhccCCCCCEEe
Confidence 32221 122445566777777777766665 3433 78888888888876544 6788888888888
Q ss_pred ccccc
Q 042296 809 VCRMN 813 (1446)
Q Consensus 809 L~~~~ 813 (1446)
+++|.
T Consensus 179 l~~N~ 183 (263)
T 1xeu_A 179 LTGQK 183 (263)
T ss_dssp EEEEE
T ss_pred CCCCc
Confidence 88765
No 104
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.26 E-value=6.1e-11 Score=138.44 Aligned_cols=271 Identities=13% Similarity=0.114 Sum_probs=160.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC------CHHHHHHHHHHHhcC-----------------C
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF------DITRITKSILNSIGT-----------------D 243 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~~i~~~l~~-----------------~ 243 (1446)
.+.|+|++|+|||||++++++.. + .+|+.+.... +...+...+...+.. .
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 105 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT 105 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred eEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence 45799999999999999998732 1 6777765432 556666666665532 0
Q ss_pred CCCCCCCHHHHHHHHHHHcCC-ceEEEEEECCCCCCh------hhHHHhcccccCCCCCcEEEEEccChHHHHhh-----
Q 042296 244 QNVDSLDFDKLQVELKKQLSQ-KKFLLVLDDVWNENY------NDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM----- 311 (1446)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~------~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~----- 311 (1446)
......+..++...+.+..+. ++++||+||++.... .++......+....++.++|+|++...+...+
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~ 185 (350)
T 2qen_A 106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITD 185 (350)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTC
T ss_pred eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcC
Confidence 000123556666666665543 389999999966321 12222222222222578999999876542211
Q ss_pred ------CC-CCceecCCCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCChhHHHHH
Q 042296 312 ------GT-VPAYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQRDWEDV 384 (1446)
Q Consensus 312 ------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~~~w~~~ 384 (1446)
+. ...+.+.+|+.+|+.+++.......+ .... .+.+.+|++.++|.|+++..++..+....+...+...
T Consensus 186 ~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~ 261 (350)
T 2qen_A 186 YESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKR 261 (350)
T ss_dssp TTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHH
Confidence 11 13689999999999999986532111 1111 3567889999999999999998764322122222111
Q ss_pred HhccccCCCCcccccchhhhhhhccC---CHHHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHH
Q 042296 385 LNCKIWDLPEERCDILPALKVSYYYL---SPRLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMF 461 (1446)
Q Consensus 385 l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~ 461 (1446)
+. +.+...+.-.+..+ ++..+..+..+|. . .++...+.....+.. ++. .......+
T Consensus 262 ~~----------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g---~~~~~~l~~~~~~~~------~~~-~~~~~~~~ 320 (350)
T 2qen_A 262 TL----------EVAKGLIMGELEELRRRSPRYVDILRAIAL-G---YNRWSLIRDYLAVKG------TKI-PEPRLYAL 320 (350)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T---CCSHHHHHHHHHHTT------CCC-CHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C---CCCHHHHHHHHHHHh------CCC-CHHHHHHH
Confidence 10 00111111112222 7888999988887 2 234455544432211 011 23556789
Q ss_pred HHHHHhcCccccccCCCCceEe-hhhHHHHHH
Q 042296 462 FKELHSRSLFQKSSNDTLRFVM-HDLVNDLAQ 492 (1446)
Q Consensus 462 ~~~L~~~~ll~~~~~~~~~~~m-H~lv~~~~~ 492 (1446)
++.|.+.++|...+ ..|.+ |++++++.+
T Consensus 321 l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 321 LENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred HHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 99999999998753 24554 778888754
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=1.4e-13 Score=162.88 Aligned_cols=207 Identities=16% Similarity=0.111 Sum_probs=126.8
Q ss_pred ceeEEEEeCCCCccccCccccCCCCCceeeccCccccc-----cCcccccccccceeeccCcc---ccccccccc-----
Q 042296 571 HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEI-----LPDSINKLYNLHTLLLEDCD---RLKKLCADM----- 637 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~---~~~~lp~~i----- 637 (1446)
+.|++..+....+..++..+..+++|++|+|++|.+.. ++..+.++++|++|+|++|. ....+|..+
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 34555555566677788888999999999999999874 44557799999999999872 112445444
Q ss_pred --cCcccceeecccCCCcccc-----cCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchh
Q 042296 638 --GNLIKLHHLNNSTTNSLEE-----MPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDA 710 (1446)
Q Consensus 638 --~~L~~L~~L~l~~~~~~~~-----~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~ 710 (1446)
..+++|++|++++|. +.. +|..++++++|++|....+ .+.... ...
T Consensus 89 ~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n------~l~~~~--------------------~~~ 141 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNN------GLGPQA--------------------GAK 141 (386)
T ss_dssp HHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSS------CCHHHH--------------------HHH
T ss_pred HHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCC------CCCHHH--------------------HHH
Confidence 788999999999998 443 6667788888888732111 110000 001
Q ss_pred hhhhccCC---------CCCceEEEEeeeCCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCC------CCCcccCc
Q 042296 711 KEAQLDKK---------KNLKVLLLQWTCNTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGT------KFPIWLGD 775 (1446)
Q Consensus 711 ~~~~l~~~---------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~p~~~~~ 775 (1446)
....+..+ ++|+.|++++|...+ .....+...+..+++|+.|++++|.+. -.|.++..
T Consensus 142 l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 142 IARALQELAVNKKAKNAPPLRSIICGRNRLEN-------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 11112222 677777777654321 111122234445567777777777654 12223433
Q ss_pred CccCCceEEEeeCCCCC----CCCC-CCCCcCccceeeccccc
Q 042296 776 SYFSNLVTLKFQNCHKC----TSLP-SIGKLLSLKHLEVCRMN 813 (1446)
Q Consensus 776 ~~l~~L~~L~L~~~~~~----~~l~-~l~~l~~L~~L~L~~~~ 813 (1446)
+++|+.|+|++|.+. ..+| .+..+++|++|++++|.
T Consensus 215 --~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 215 --CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp --CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred --CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 667777777777642 2333 45566667777776654
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=2.9e-11 Score=133.04 Aligned_cols=98 Identities=26% Similarity=0.348 Sum_probs=79.1
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccCc-ccccccccceeeccCcccccccc-ccccCcccceeec
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~ 647 (1446)
..|+.|+|++|.++.+ |..|.++++|++|+|++|.++.+|. .+.++++|++|++++|. +..+| ..|..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEE
Confidence 4688999999999887 4578999999999999999997754 57899999999999985 66665 4578999999999
Q ss_pred ccCCCcccccCCc-cccccccccc
Q 042296 648 NSTTNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~~-i~~L~~L~~L 670 (1446)
+++|. +..+|.. ++.+++|++|
T Consensus 114 L~~N~-l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 114 LGGNQ-LKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cCCCc-CCCcChhHhccCCcccEE
Confidence 99997 6777654 4556666555
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=4.3e-11 Score=128.14 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=73.2
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccccccccCcccceeecccCCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 652 (1446)
+.++++++.++.+|..+. .+|++|+|++|.|+.+|. .|.++++|++|+|++|......|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 468889999999988775 689999999999998865 78899999999999985434447789999999999999987
Q ss_pred cccccCCc-cccccccccc
Q 042296 653 SLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 653 ~~~~~p~~-i~~L~~L~~L 670 (1446)
+..+|.. ++.+++|++|
T Consensus 92 -l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEE
T ss_pred -CCccCHhHccCCCCCCEE
Confidence 6666654 2344444433
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=1.3e-12 Score=152.60 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=46.5
Q ss_pred cCceeEEEEeCCCCccccC-----ccccCCC-CCceeeccCcccccc-Ccccccc-----cccceeeccCcccccccccc
Q 042296 569 KLHRLKVFSLCGYQISELP-----NSVGDLR-YLRYLNLSRTCIEIL-PDSINKL-----YNLHTLLLEDCDRLKKLCAD 636 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~~~~~lp~~ 636 (1446)
..++|++|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|+|++|......+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4444666666666666553 4455565 666666666666643 3444444 66666666666422222332
Q ss_pred cc----Cc-ccceeecccCCC
Q 042296 637 MG----NL-IKLHHLNNSTTN 652 (1446)
Q Consensus 637 i~----~L-~~L~~L~l~~~~ 652 (1446)
+. .+ ++|++|++++|.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHhCCCCccEEECcCCc
Confidence 22 22 566666666665
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.21 E-value=3.4e-11 Score=128.22 Aligned_cols=93 Identities=28% Similarity=0.438 Sum_probs=66.6
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCcccccccccc-ccCcccceeecccCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNSTT 651 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 651 (1446)
+.++++++.++.+|..+. .+|++|++++|+++.+|. .+.++++|++|++++| .+..+|.. |..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 456778888888886653 588888888888887765 4678888888888887 46666554 678888888888888
Q ss_pred CcccccCCc-cccccccccc
Q 042296 652 NSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 652 ~~~~~~p~~-i~~L~~L~~L 670 (1446)
. +..+|.. ++.+++|++|
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 87 Q-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp C-CCCCCTTTTTTCTTCCEE
T ss_pred c-CCccCHhHhcCccCCCEE
Confidence 6 5555543 3444444433
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=7.9e-11 Score=127.07 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=64.3
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCcccccc-CcccccccccceeeccCcccccccccc-ccCcccceeecccCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNSTT 651 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 651 (1446)
+.++++++.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++|. +..+|.. |..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC
Confidence 467888888888887665 7888899998888876 5678888888999988874 6777644 688888888888888
Q ss_pred CcccccCC
Q 042296 652 NSLEEMPR 659 (1446)
Q Consensus 652 ~~~~~~p~ 659 (1446)
. +..+|.
T Consensus 99 ~-l~~l~~ 105 (229)
T 3e6j_A 99 Q-LTVLPS 105 (229)
T ss_dssp C-CCCCCT
T ss_pred c-CCccCh
Confidence 6 555553
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=1.9e-11 Score=137.30 Aligned_cols=99 Identities=21% Similarity=0.347 Sum_probs=82.0
Q ss_pred hhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCccccee
Q 042296 566 RLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHH 645 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 645 (1446)
.+..+++|++|++++|.++.++. +.++++|++|++++|.++.+|. +.++++|++|++++| .+..+| .+..+++|++
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~ 138 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLES 138 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCE
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCE
Confidence 35578899999999999998876 8999999999999999998865 899999999999998 466664 5889999999
Q ss_pred ecccCCCcccccCCccccccccccc
Q 042296 646 LNNSTTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 646 L~l~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
|++++|. +..+ ..++.+++|++|
T Consensus 139 L~l~~n~-l~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 139 LYLGNNK-ITDI-TVLSRLTKLDTL 161 (291)
T ss_dssp EECCSSC-CCCC-GGGGGCTTCSEE
T ss_pred EEccCCc-CCcc-hhhccCCCCCEE
Confidence 9999987 6655 456666666666
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.18 E-value=8.2e-11 Score=125.95 Aligned_cols=93 Identities=15% Similarity=0.269 Sum_probs=71.3
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccC--cccccccccceeeccCcccccccc-ccccCcccceeecccC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILP--DSINKLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHHLNNST 650 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~ 650 (1446)
+.++++++.++.+|..+. ..+++|+|++|.|+.++ ..|.++++|++|+|++|. +..+| ..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCC
Confidence 478999999999998775 45789999999999874 348899999999999985 66665 4689999999999999
Q ss_pred CCcccccCCc-cccccccccc
Q 042296 651 TNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 651 ~~~~~~~p~~-i~~L~~L~~L 670 (1446)
|. +..+|.. ++.+++|++|
T Consensus 91 N~-l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 91 NR-LENVQHKMFKGLESLKTL 110 (220)
T ss_dssp SC-CCCCCGGGGTTCSSCCEE
T ss_pred Cc-cCccCHhHhcCCcCCCEE
Confidence 87 5555543 4444444444
No 113
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.17 E-value=3.9e-10 Score=131.97 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=156.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-----CCHHHHHHHHHHHhcC-------------C-----
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-----FDITRITKSILNSIGT-------------D----- 243 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~l~~-------------~----- 243 (1446)
.+.|+|++|+|||||++++++. ... ..+|+.+... .+...+...+.+.+.. .
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 106 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIV 106 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEE
T ss_pred cEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEE
Confidence 4579999999999999999874 222 3578887643 3444555554443310 0
Q ss_pred --C-C-------CCCCCHHHHHHHHHHHcCCceEEEEEECCCCCCh---hhHHHhcccccCCCCCcEEEEEccChHHHHh
Q 042296 244 --Q-N-------VDSLDFDKLQVELKKQLSQKKFLLVLDDVWNENY---NDWIDLSRPFEAGAPGSKIVVTTRNQAVVAI 310 (1446)
Q Consensus 244 --~-~-------~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 310 (1446)
. . .......++...+.+.-+ ++++||+||++..+. .+|......+.....+.++|+|+|.......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~ 185 (357)
T 2fna_A 107 IMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYD 185 (357)
T ss_dssp ECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHH
T ss_pred ecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHH
Confidence 0 0 012345556666655433 599999999965311 1222222222222247899999998654321
Q ss_pred h-----------CC-CCceecCCCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCCCCh
Q 042296 311 M-----------GT-VPAYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGKTDQ 378 (1446)
Q Consensus 311 ~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~~~~ 378 (1446)
+ +. ...+.+.+|+.+|+.+++...+...+ ... +.. ..|++.++|.|+++..++..+....+.
T Consensus 186 ~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~-~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~ 259 (357)
T 2fna_A 186 YLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDF-KDY----EVVYEKIGGIPGWLTYFGFIYLDNKNL 259 (357)
T ss_dssp HTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCC-CCH----HHHHHHHCSCHHHHHHHHHHHHHHCCH
T ss_pred HHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCC-CcH----HHHHHHhCCCHHHHHHHHHHHccccch
Confidence 1 11 14689999999999999987542111 111 111 679999999999999998876533233
Q ss_pred hHHHHHHhccccCCCCcccccchhhh-hhhc--cCCHHHHHHHhhhccCCCCceeChHHHHHHHH-hCCCCCCCCCCCCH
Q 042296 379 RDWEDVLNCKIWDLPEERCDILPALK-VSYY--YLSPRLKQCFTYCSLLPKDYEFKEEEIILLWI-AVGFLDQEDNGRES 454 (1446)
Q Consensus 379 ~~w~~~l~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~-a~g~i~~~~~~~~~ 454 (1446)
..|...+-.. ....+...+. +.++ .+++..+..+..+|.- . +...+....- ..|. ...
T Consensus 260 ~~~~~~~~~~------~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g---~--~~~~l~~~~~~~~g~-------~~~ 321 (357)
T 2fna_A 260 DFAINQTLEY------AKKLILKEFENFLHGREIARKRYLNIMRTLSKC---G--KWSDVKRALELEEGI-------EIS 321 (357)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC---B--CHHHHHHHHHHHHCS-------CCC
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHhhccccccHHHHHHHHHHHcC---C--CHHHHHHHHHHhcCC-------CCC
Confidence 3332211000 0001111121 2221 6788899999999882 1 3444432210 1121 012
Q ss_pred HHHHHHHHHHHHhcCccccccCCCCceE-ehhhHHHHH
Q 042296 455 EDLGHMFFKELHSRSLFQKSSNDTLRFV-MHDLVNDLA 491 (1446)
Q Consensus 455 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~-mH~lv~~~~ 491 (1446)
......+++.|.+.++|...+ ..|+ .|++++++.
T Consensus 322 ~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 322 DSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 345678899999999998753 2566 578888764
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=1.5e-11 Score=151.78 Aligned_cols=166 Identities=18% Similarity=0.253 Sum_probs=119.1
Q ss_pred ceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecccC
Q 042296 571 HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNST 650 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 650 (1446)
..+..+.+..+.+..++ .+..|.+|++|++++|.+..+| .+..|++|++|+|++| .+..+|. +..+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcC
Confidence 33444556666666553 3568899999999999999997 5999999999999998 4667766 99999999999999
Q ss_pred CCcccccCCcccccccccccCceEecCCCCCChhhhhhhhcccCeeEEeeccCCCCcchhhhhhccCCCCCceEEEEeee
Q 042296 651 TNSLEEMPRGIGKLTFLQTLCNFAVGKDSGSGLQDLKLLMYLRGTLKISKLENVKHVGDAKEAQLDKKKNLKVLLLQWTC 730 (1446)
Q Consensus 651 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 730 (1446)
|. +..+| .++.+++|+.| +|+.|.
T Consensus 97 N~-l~~l~-~l~~l~~L~~L------------------------------------------------------~Ls~N~ 120 (605)
T 1m9s_A 97 NK-IKDLS-SLKDLKKLKSL------------------------------------------------------SLEHNG 120 (605)
T ss_dssp SC-CCCCT-TSTTCTTCCEE------------------------------------------------------ECTTSC
T ss_pred CC-CCCCh-hhccCCCCCEE------------------------------------------------------EecCCC
Confidence 97 65554 45555555554 333322
Q ss_pred CCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCcCccCCceEEEeeCCCCCCCCCCCCCcCccceeecc
Q 042296 731 NTDTDGSRDLGTETRVLDMLRPHQNLEQFFISGYGGTKFPIWLGDSYFSNLVTLKFQNCHKCTSLPSIGKLLSLKHLEVC 810 (1446)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 810 (1446)
... +..+..+++|+.|++++|.+..++ .+.. +++|+.|+|++|.+....| +..+++|+.|+|+
T Consensus 121 l~~-------------l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~--l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 121 ISD-------------INGLVHLPQLESLYLGNNKITDIT-VLSR--LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS 183 (605)
T ss_dssp CCC-------------CGGGGGCTTCSEEECCSSCCCCCG-GGGS--CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred CCC-------------CccccCCCccCEEECCCCccCCch-hhcc--cCCCCEEECcCCcCCCchh-hccCCCCCEEECc
Confidence 221 122445678888888888877763 3333 7888888888887665444 7788888888887
Q ss_pred ccc
Q 042296 811 RMN 813 (1446)
Q Consensus 811 ~~~ 813 (1446)
+|.
T Consensus 184 ~N~ 186 (605)
T 1m9s_A 184 KNH 186 (605)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=4.9e-11 Score=138.96 Aligned_cols=93 Identities=26% Similarity=0.368 Sum_probs=69.2
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccCcc-cc-cccccceeeccCcccccccc-ccccCcccceeecccC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDS-IN-KLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHHLNNST 650 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~ 650 (1446)
++++++++.++.+|..+. ..+++|+|++|+|+.+|.. +. ++.+|++|+|++|. +..+| ..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 478888888888887665 4588888888888877654 44 88888888888874 56665 4588888888888888
Q ss_pred CCcccccCC-ccccccccccc
Q 042296 651 TNSLEEMPR-GIGKLTFLQTL 670 (1446)
Q Consensus 651 ~~~~~~~p~-~i~~L~~L~~L 670 (1446)
|. +..+|. .++.+++|++|
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEE
T ss_pred Cc-CCcCCHHHhCCCcCCCEE
Confidence 87 666654 35566666555
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=5e-12 Score=147.69 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=45.6
Q ss_pred hcCc-eeEEEEeCCCCcccc-CccccCC-----CCCceeeccCccccccC-cc----cccc-cccceeeccCcccccccc
Q 042296 568 LKLH-RLKVFSLCGYQISEL-PNSVGDL-----RYLRYLNLSRTCIEILP-DS----INKL-YNLHTLLLEDCDRLKKLC 634 (1446)
Q Consensus 568 ~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~Lr~L~L~~~~i~~lp-~~----i~~L-~~L~~L~L~~~~~~~~lp 634 (1446)
..++ +|++|+|++|.++.. +..+..+ .+|++|+|++|.++..+ .. +..+ ++|++|++++|. ++..+
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence 3555 666666666666544 3444443 66666666666666433 22 2333 566666666664 33332
Q ss_pred -ccc----cC-cccceeecccCCC
Q 042296 635 -ADM----GN-LIKLHHLNNSTTN 652 (1446)
Q Consensus 635 -~~i----~~-L~~L~~L~l~~~~ 652 (1446)
..+ .. .++|++|++++|.
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHHHHhCCCceeEEEccCCc
Confidence 222 22 2466666666665
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.13 E-value=1.3e-10 Score=141.49 Aligned_cols=186 Identities=22% Similarity=0.257 Sum_probs=111.4
Q ss_pred ccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCCCCCccEEEEeecCCcccCCccccCCCCCCccEE
Q 042296 1008 CRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALPSQLRIISIQYCNALKSLPVTWMHDTNTSLETL 1087 (1446)
Q Consensus 1008 ~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~L 1087 (1446)
.+|+.|++++| .++.+|.. + +++|+.|++++| .++.+| ..+++|+.|++++|.. +.+|. +.. +|++|
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~-l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~l-~~ip~-l~~----~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDN-L--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNRL-STLPE-LPA----SLKHL 125 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSC-C--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSCC-SCCCC-CCT----TCCEE
T ss_pred CCccEEEeCCC-CCCccCHh-H--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCCC-CCcch-hhc----CCCEE
Confidence 37889999988 46668763 3 378999999986 566787 5678899999998874 44776 322 58888
Q ss_pred EEEecCCCccccCCCCCCCccEEEEecCCCCcccccccccccCCCCCCCcccEEEeccCCchhhcccCCCCCCcCCceee
Q 042296 1088 KVYGCNLLTYITSVQLPASLKHVEIEDCSNLRTLREEGEIHNGSRRDTSLLEHLRIVNCQSLITLFSKNELPDSLEHLEV 1167 (1446)
Q Consensus 1088 ~l~~~~~l~~~~~~~~~~sL~~L~l~~c~~L~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 1167 (1446)
++++|.... +|. .+++|+.|+++++. ++.++
T Consensus 126 ~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~-l~~lp--------------------------------------------- 156 (571)
T 3cvr_A 126 DVDNNQLTM-LPE--LPALLEYINADNNQ-LTMLP--------------------------------------------- 156 (571)
T ss_dssp ECCSSCCSC-CCC--CCTTCCEEECCSSC-CSCCC---------------------------------------------
T ss_pred ECCCCcCCC-CCC--cCccccEEeCCCCc-cCcCC---------------------------------------------
Confidence 888876543 443 34445555444321 11111
Q ss_pred cccCcccccccCCCCccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcc-------cEEEEe
Q 042296 1168 GICSKLKFLSCSGNLPQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHL-------QEVGIW 1240 (1446)
Q Consensus 1168 ~~c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L-------~~L~l~ 1240 (1446)
. .+++|+.|++++|.. +.+|. +. ++|+.|++++|.. ..+|. +.. +| +.|+++
T Consensus 157 ----------~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N~L-~~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 157 ----------E---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTNLL-ESLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp ----------C---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSSCC-SSCCC-CC----------CCEEEECC
T ss_pred ----------C---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCCCC-Cchhh-HHH--hhhcccccceEEecC
Confidence 0 123444444444432 22444 33 5666666666533 35555 433 55 777777
Q ss_pred ccCCCcccCCCCCCcccccceecccccCcccccccCC
Q 042296 1241 SCGNLVSFPEGGLPSANLTKLQITWCDKLEALPEGMN 1277 (1446)
Q Consensus 1241 ~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~~lp~~l~ 1277 (1446)
+| .++.+|..++.+++|+.|++++|+..+.+|..+.
T Consensus 216 ~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 216 EN-RITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp SS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 66 5666776666677777777777665555555443
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=7.4e-11 Score=130.20 Aligned_cols=97 Identities=24% Similarity=0.223 Sum_probs=81.8
Q ss_pred hhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceee
Q 042296 567 LLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHL 646 (1446)
Q Consensus 567 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 646 (1446)
+..+++|++|++++|.++.+| .++.+++|++|+|++|+++.+|. +.++++|++|++++| .+..+|.... ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEE
Confidence 447889999999999999998 68899999999999999999887 999999999999998 5777775433 999999
Q ss_pred cccCCCcccccCCccccccccccc
Q 042296 647 NNSTTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 647 ~l~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
++++|. +..+| .++.+++|+.|
T Consensus 112 ~L~~N~-l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 112 FLDNNE-LRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp ECCSSC-CSBSG-GGTTCTTCCEE
T ss_pred EccCCc-cCCCh-hhcCcccccEE
Confidence 999997 66665 47777777776
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=1.8e-12 Score=159.18 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=47.5
Q ss_pred cCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecccCCCcccccCCccccccccccc
Q 042296 591 GDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 591 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
..+++|+.|+|++|+++.||++|+++++|+.|++++|..+..+|.. ++.++ .....|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------l~~~~-----~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL------MRALD-----PLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HHHHC-----TGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH------HHhcc-----cccCCHHHHHHHHhcccC
Confidence 5678999999999999999999999999999999876433333311 11111 133455566666666666
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=1.5e-10 Score=118.42 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=72.4
Q ss_pred cCceeEEEEeCCCCcc--ccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceee
Q 042296 569 KLHRLKVFSLCGYQIS--ELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHL 646 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 646 (1446)
..+.|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..+.++++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4567888888888877 7777778888888888888888777 667788888888888875333366666678888888
Q ss_pred cccCCCcccccC--Cccccccccccc
Q 042296 647 NNSTTNSLEEMP--RGIGKLTFLQTL 670 (1446)
Q Consensus 647 ~l~~~~~~~~~p--~~i~~L~~L~~L 670 (1446)
++++|. +..+| ..++.+++|++|
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEE
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEE
Confidence 888876 66655 445555555555
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.04 E-value=1.6e-10 Score=123.67 Aligned_cols=123 Identities=26% Similarity=0.329 Sum_probs=96.4
Q ss_pred CCcceecccccccCCCCcchhHHHHh-hhcCceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccCcc-ccccc
Q 042296 541 EHLRTFLPVMLSNCWGGYLAYSILQR-LLKLHRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILPDS-INKLY 617 (1446)
Q Consensus 541 ~~Lr~L~~~~~~~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~ 617 (1446)
+.++.|.+.++. + ..+++. +..+++|++|+|++|.++.+ |..|.++.+|++|+|++|.|+.+|.. |.+++
T Consensus 32 ~~l~~L~l~~n~------i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT------I-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC------C-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCEEECCCCc------C-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 456666544332 1 233333 34889999999999999887 78899999999999999999998865 68899
Q ss_pred ccceeeccCccccccc-cccccCcccceeecccCCCcccccCC-cccccccccccCc
Q 042296 618 NLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNSTTNSLEEMPR-GIGKLTFLQTLCN 672 (1446)
Q Consensus 618 ~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~ 672 (1446)
+|++|+|++|. +..+ |..|..+++|++|++++|. +..+|. .++.+++|++|..
T Consensus 105 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 105 SLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEe
Confidence 99999999985 5555 6778999999999999998 777765 4888888888744
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.04 E-value=2.9e-10 Score=122.68 Aligned_cols=98 Identities=31% Similarity=0.424 Sum_probs=77.4
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccCc-ccccccccceeeccCcccccccccc-ccCcccceeec
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 647 (1446)
++|++|+|++|.++.+ |..|..+.+|++|+|++|+|+.+|. .|.++++|++|+|++| .+..+|.. |..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 5678888888888877 6778888888888888888888775 4578888888888887 46666544 67888888888
Q ss_pred ccCCCcccccCCccccccccccc
Q 042296 648 NSTTNSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~~i~~L~~L~~L 670 (1446)
+++|. +..+|..++.+++|++|
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHL 140 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEE
T ss_pred ccCCc-ccccCcccccCCCCCEE
Confidence 88887 77888777777777776
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=1.9e-10 Score=117.57 Aligned_cols=110 Identities=23% Similarity=0.192 Sum_probs=91.3
Q ss_pred HHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccc-cCcccccccccceeeccCcccccccc--ccccC
Q 042296 563 ILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEI-LPDSINKLYNLHTLLLEDCDRLKKLC--ADMGN 639 (1446)
Q Consensus 563 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~ 639 (1446)
+|..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.++. +|..+.++++|++|++++| .+..+| ..+..
T Consensus 41 i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence 344445788999999999999888 778899999999999999987 7777788999999999998 577766 67889
Q ss_pred cccceeecccCCCcccccCC----cccccccccccCceEe
Q 042296 640 LIKLHHLNNSTTNSLEEMPR----GIGKLTFLQTLCNFAV 675 (1446)
Q Consensus 640 L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~ 675 (1446)
+++|++|++++|. +..+|. .++.+++|+.|+...+
T Consensus 119 l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 119 LECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999999999997 777776 6888889988855443
No 124
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.01 E-value=1.2e-09 Score=114.85 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=97.0
Q ss_pred ccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCCCCCCccccccee
Q 042296 1183 PQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPEGGLPSANLTKLQ 1262 (1446)
Q Consensus 1183 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~ 1262 (1446)
+++|+.|++++|.. ..+| .+..+++|+.|++++| .+..+ ..+..+++|++|++++|......|..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINV-TDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCC-SCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCc-cChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45677777777643 3555 5777888888888887 33434 3677888888888888854444667777778888888
Q ss_pred cccccCcccccc---cCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcceeee
Q 042296 1263 ITWCDKLEALPE---GMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSI 1339 (1446)
Q Consensus 1263 l~~c~~l~~lp~---~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l 1339 (1446)
+++|......|. .+++|++|++++|..+..++. +...++|+.|++++|.... ++ .+..+++|++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~----l~~l~~L~~L~l~~n~i~~-~~-----~l~~l~~L~~L~l 188 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNIQFDGVHD-YR-----GIEDFPKLNQLYA 188 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG----GGGCSSCCEEECTTBCCCC-CT-----TGGGCSSCCEEEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh----hcCCCCCCEEECCCCCCcC-hH-----HhccCCCCCEEEe
Confidence 887765443443 456777888877765555552 1234577777777776532 21 2666777777777
Q ss_pred cCc
Q 042296 1340 GGL 1342 (1446)
Q Consensus 1340 ~~~ 1342 (1446)
+++
T Consensus 189 ~~N 191 (197)
T 4ezg_A 189 FSQ 191 (197)
T ss_dssp CBC
T ss_pred eCc
Confidence 774
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.01 E-value=1.3e-10 Score=116.06 Aligned_cols=105 Identities=20% Similarity=0.170 Sum_probs=79.6
Q ss_pred HHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccc-cCcccccccccceeeccCcccccccc--ccccCc
Q 042296 564 LQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEI-LPDSINKLYNLHTLLLEDCDRLKKLC--ADMGNL 640 (1446)
Q Consensus 564 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L 640 (1446)
|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++++++|++|++++|. +..+| ..++.+
T Consensus 35 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l 112 (149)
T 2je0_A 35 EGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKL 112 (149)
T ss_dssp CSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGC
T ss_pred HHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhC
Confidence 33334677888888888888777 667888888888888888886 77777778888888888874 56554 678888
Q ss_pred ccceeecccCCCcccccCC----cccccccccccC
Q 042296 641 IKLHHLNNSTTNSLEEMPR----GIGKLTFLQTLC 671 (1446)
Q Consensus 641 ~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~ 671 (1446)
++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 113 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 113 ENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 888888888886 666665 577777777773
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.99 E-value=2.7e-10 Score=117.32 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=98.4
Q ss_pred cccCCCCcceecccccccCCCCcchhHHHHhhhcCc-eeEEEEeCCCCccccCccccCCCCCceeeccCccccccCccc-
Q 042296 536 DFDDTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLH-RLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSI- 613 (1446)
Q Consensus 536 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i- 613 (1446)
.+.++.+|+.|.+.++.. . .+ +.+..+. +|++|++++|.++.+ ..++.+++|++|+|++|.|+.+|..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l------~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI------P-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCC------C-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred hcCCcCCceEEEeeCCCC------c-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchh
Confidence 345566777775544321 1 22 2344444 899999999999888 57889999999999999999888655
Q ss_pred ccccccceeeccCccccccccc--cccCcccceeecccCCCcccccCCc----ccccccccccCce
Q 042296 614 NKLYNLHTLLLEDCDRLKKLCA--DMGNLIKLHHLNNSTTNSLEEMPRG----IGKLTFLQTLCNF 673 (1446)
Q Consensus 614 ~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~ 673 (1446)
+.+++|++|++++| .++.+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|+..
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCC
Confidence 89999999999998 4788887 78899999999999998 7778875 8888888888543
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.99 E-value=3.5e-09 Score=112.49 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=94.8
Q ss_pred ccccceeeeccCCCchhhhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCCC-CCCcccccce
Q 042296 1183 PQALKFICVFRCSKLESIAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPEG-GLPSANLTKL 1261 (1446)
Q Consensus 1183 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L 1261 (1446)
+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++| .++.+|.. +..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 346666666666544333444567777777777776554433444567777777777776 45555543 3445666666
Q ss_pred ecccccCcccccccCCccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCCCcchhhhcccCccCCCCCcceeeecC
Q 042296 1262 QITWCDKLEALPEGMNSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGG 1341 (1446)
Q Consensus 1262 ~l~~c~~l~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~ 1341 (1446)
++++|. ++.+|. .. +...++|+.|++++|.... + ....+..+++|++|++++
T Consensus 106 ~L~~N~-l~~~~~---------------------~~--~~~l~~L~~L~l~~N~l~~-~---~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 106 ALNTNQ-LQSLPD---------------------GV--FDKLTQLKDLRLYQNQLKS-V---PDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp ECCSSC-CCCCCT---------------------TT--TTTCTTCCEEECCSSCCSC-C---CTTTTTTCTTCCEEECCS
T ss_pred EcCCCc-CcccCH---------------------hH--hccCCcCCEEECCCCccce-e---CHHHhccCCCccEEEecC
Confidence 666542 233322 10 1123456666666665422 2 223367778888888888
Q ss_pred cCCccccCcccccCCCcccccceecccccCCccCccCCCCCCC
Q 042296 1342 LHDVVSFSPQELGTTLPASLTHLWIYDFQNLECLSSVGQNLTS 1384 (1446)
Q Consensus 1342 ~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~~~~~~l~~ 1384 (1446)
|+-... ..+|+.|+++.+..-+.+|..+++++.
T Consensus 158 N~~~~~----------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 158 NPWDCT----------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCBCCC----------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCeecC----------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 643222 235777888777777778876665554
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=4.1e-10 Score=142.98 Aligned_cols=104 Identities=24% Similarity=0.300 Sum_probs=94.7
Q ss_pred hhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCccccee
Q 042296 566 RLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHH 645 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 645 (1446)
.+..++.|++|+|++|.+..+|..+.++.+|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|++|++|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKY 297 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSE
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCE
Confidence 344899999999999999999988999999999999999999999999999999999999985 7799999999999999
Q ss_pred ecccCCCcccccCCcccccccccccC
Q 042296 646 LNNSTTNSLEEMPRGIGKLTFLQTLC 671 (1446)
Q Consensus 646 L~l~~~~~~~~~p~~i~~L~~L~~L~ 671 (1446)
|+|++|. +..+|..|++|++|++|.
T Consensus 298 L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp EECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred EECCCCC-CCccChhhhcCCCccEEe
Confidence 9999997 789999999999999983
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=7.5e-11 Score=149.79 Aligned_cols=120 Identities=22% Similarity=0.298 Sum_probs=100.2
Q ss_pred ccCCCCcceecccccccCCCCcchhHHHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccc
Q 042296 537 FDDTEHLRTFLPVMLSNCWGGYLAYSILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKL 616 (1446)
Q Consensus 537 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L 616 (1446)
+..+..|+.|.+.++. ...++..++++++|++|+|++|.|+.+|..|++|.+|++|+|++|.|+.+|..|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~-------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp --CCCCCCEEECTTSC-------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred hccCCCCcEEECCCCC-------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 4566777777555432 235677788999999999999999999999999999999999999999999999999
Q ss_pred cccceeeccCccccccccccccCcccceeecccCCCcccccCCccccc
Q 042296 617 YNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTTNSLEEMPRGIGKL 664 (1446)
Q Consensus 617 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 664 (1446)
++|++|+|++| .++.+|..|++|++|++|+|++|.....+|..++.+
T Consensus 293 ~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp TTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 99999999998 578999999999999999999998444555555443
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=1.6e-08 Score=119.34 Aligned_cols=264 Identities=13% Similarity=0.022 Sum_probs=157.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchh----cc--CCceEEEEeCCCC-CHHHHHHHHHHHhcCC-CCCCCCCHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ----DH--FDLKAWTCVSEDF-DITRITKSILNSIGTD-QNVDSLDFDKLQVEL 258 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~l 258 (1446)
.+.|+|++|+||||+|+.+++...-. .. ....+|+.+.... +...++..++.++... ..............+
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 126 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKI 126 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 35799999999999999999842111 01 3356777777766 8888889999888332 221233446667778
Q ss_pred HHHcCCceEEEEEECCCCCCh----hh-HHHhcccccCCCCCcEEEEEccChHHH----Hhh--CCCCceecCCCChHhH
Q 042296 259 KKQLSQKKFLLVLDDVWNENY----ND-WIDLSRPFEAGAPGSKIVVTTRNQAVV----AIM--GTVPAYPLKELSDEDC 327 (1446)
Q Consensus 259 ~~~l~~~~~LlVlDdv~~~~~----~~-~~~~~~~l~~~~~gs~iivTtR~~~v~----~~~--~~~~~~~l~~L~~~~~ 327 (1446)
.+.++.++.+||+||++.... .. +..+.... .+..||+||+..... ... .....+.+++++.++.
T Consensus 127 ~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 127 KNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQL 202 (384)
T ss_dssp HHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHH
T ss_pred HHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHH
Confidence 888877666999999965311 11 22222221 678899999875311 111 1123799999999999
Q ss_pred HHHHHhhccC-CCCCCCChhHHHHHHHHHHHhC---Cchh-HHHHHHhhh--c---CCCChhHHHHHHhccccCCCCccc
Q 042296 328 LNVFTQHSLG-TRDFNMHKSLEEIGKKIVIKCN---GLPL-AAKTLGGLL--R---GKTDQRDWEDVLNCKIWDLPEERC 397 (1446)
Q Consensus 328 ~~lf~~~a~~-~~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~L--~---~~~~~~~w~~~l~~~~~~~~~~~~ 397 (1446)
.+++...+.. ....... .+....|++.++ |.|. |+.++.... . ..-+.+.+..+++..
T Consensus 203 ~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~--------- 270 (384)
T 2qby_B 203 KFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY--------- 270 (384)
T ss_dssp HHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH---------
Confidence 9999987531 1111222 234556777777 8776 444433322 2 122456666665532
Q ss_pred ccchhhhhhhccCCHHHHHHHhhhccCCCCceeChHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHhcCccccc
Q 042296 398 DILPALKVSYYYLSPRLKQCFTYCSLLPKDYEFKEEEIILLWIAVGFLDQEDNGRESEDLGHMFFKELHSRSLFQKS 474 (1446)
Q Consensus 398 ~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 474 (1446)
....+.-+++.|+++.+..+..++....+..+. +.....--..| + ..........+++.|.++++++..
T Consensus 271 -~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~-----~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 271 -EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q-----KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C-----CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 113456677889988888777666511101111 11111111223 1 112235667889999999999873
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=6.9e-10 Score=115.75 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=81.8
Q ss_pred ceeEEEEeCCCCccccCccccCCCCCceeeccCccccccC-cccccccccceeeccCcccccccc-ccccCcccceeecc
Q 042296 571 HRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHHLNN 648 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l 648 (1446)
+.|++|++++|.|+.+|..|.++.+|++|+|++|.|+.+| ..|.++++|++|+|++|. +..+| ..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 4678889999999888888889999999999999998776 468889999999999885 55554 46888999999999
Q ss_pred cCCCcccccCCc-ccccccccccCc
Q 042296 649 STTNSLEEMPRG-IGKLTFLQTLCN 672 (1446)
Q Consensus 649 ~~~~~~~~~p~~-i~~L~~L~~L~~ 672 (1446)
++|. +..+|.. +..+++|+.|..
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCC-CCeeChhhhhcCccccEEEe
Confidence 9887 7777764 777888887743
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.95 E-value=4e-10 Score=112.39 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=89.3
Q ss_pred cCceeEEEEeCCCCcc--ccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceee
Q 042296 569 KLHRLKVFSLCGYQIS--ELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHL 646 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 646 (1446)
..++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.....+|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 5678999999999998 8899999999999999999999988 779999999999999986444488888889999999
Q ss_pred cccCCCcccccC--CcccccccccccC
Q 042296 647 NNSTTNSLEEMP--RGIGKLTFLQTLC 671 (1446)
Q Consensus 647 ~l~~~~~~~~~p--~~i~~L~~L~~L~ 671 (1446)
++++|. +..+| ..++.+++|++|.
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEE
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEe
Confidence 999998 77765 7788899888883
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.95 E-value=8.2e-10 Score=118.15 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=88.1
Q ss_pred hhcCceeEEEEeCCCCccccC-ccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccccccccCcccce
Q 042296 567 LLKLHRLKVFSLCGYQISELP-NSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCADMGNLIKLH 644 (1446)
Q Consensus 567 ~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 644 (1446)
+..+++|++|+|++|.|+.++ ..|.++.+|++|+|++|.++.+|. .|.++++|++|+|++|......|..|..+++|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 348899999999999999885 479999999999999999998865 588999999999999854444477799999999
Q ss_pred eecccCCCccccc-CCcccccccccccCc
Q 042296 645 HLNNSTTNSLEEM-PRGIGKLTFLQTLCN 672 (1446)
Q Consensus 645 ~L~l~~~~~~~~~-p~~i~~L~~L~~L~~ 672 (1446)
+|++++|. +..+ |..++.+++|++|..
T Consensus 133 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 133 LLSLYDNQ-ITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp EEECTTSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred EEECCCCc-CCEECHHHhcCCCCCCEEEe
Confidence 99999998 6666 677888988888843
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.95 E-value=1.2e-08 Score=120.87 Aligned_cols=266 Identities=14% Similarity=0.078 Sum_probs=158.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc---c-CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD---H-FDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|++|+||||+|+.+++...... . -...+|+.+....+...+...++.+++...........+....+.+.+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 457999999999999999997421110 0 124577888888888999999999997654433445666677777776
Q ss_pred --CCceEEEEEECCCCCChh--hHHHh---cccccCC--CCCcEEEEEccChHH--------HHhhCCCCceecCCCChH
Q 042296 263 --SQKKFLLVLDDVWNENYN--DWIDL---SRPFEAG--APGSKIVVTTRNQAV--------VAIMGTVPAYPLKELSDE 325 (1446)
Q Consensus 263 --~~~~~LlVlDdv~~~~~~--~~~~~---~~~l~~~--~~gs~iivTtR~~~v--------~~~~~~~~~~~l~~L~~~ 325 (1446)
.+++.+||+|+++.-... ..+.+ ....... ..+..+|.||+.... ...++ ...+.+++++.+
T Consensus 126 ~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~ 204 (387)
T 2v1u_A 126 SRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAP 204 (387)
T ss_dssp TTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHH
T ss_pred hccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHH
Confidence 356899999999653211 11222 2222111 346678888876522 11111 136899999999
Q ss_pred hHHHHHHhhcc---CCCCCCCChhHHHHHHHHHHHhC---Cch-hHHHHHHhhhc-----CC--CChhHHHHHHhccccC
Q 042296 326 DCLNVFTQHSL---GTRDFNMHKSLEEIGKKIVIKCN---GLP-LAAKTLGGLLR-----GK--TDQRDWEDVLNCKIWD 391 (1446)
Q Consensus 326 ~~~~lf~~~a~---~~~~~~~~~~~~~~~~~i~~~c~---glP-lai~~~~~~L~-----~~--~~~~~w~~~l~~~~~~ 391 (1446)
+..+++...+. ... ...+ +....+++.++ |.| .|+.++..+.. +. -+.+.+..++...
T Consensus 205 ~~~~il~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~--- 276 (387)
T 2v1u_A 205 QLRDILETRAEEAFNPG--VLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI--- 276 (387)
T ss_dssp HHHHHHHHHHHHHBCTT--TBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhccCC--CCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH---
Confidence 99999988752 211 1122 34556777777 998 33333332221 11 1355555555421
Q ss_pred CCCcccccchhhhhhhccCCHHHHHHHhhhc-cCCCCceeChHHHHHHH----HhCCCCCCCCCCCCHHHHHHHHHHHHH
Q 042296 392 LPEERCDILPALKVSYYYLSPRLKQCFTYCS-LLPKDYEFKEEEIILLW----IAVGFLDQEDNGRESEDLGHMFFKELH 466 (1446)
Q Consensus 392 ~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~i~~~~li~~w----~a~g~i~~~~~~~~~~~~~~~~~~~L~ 466 (1446)
....+.-++..++.+.+..+...+ ++.....+....+.+.. -..| + .......+..+++.|.
T Consensus 277 -------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~~L~ 343 (387)
T 2v1u_A 277 -------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-L-----EHVTLRRVSGIISELD 343 (387)
T ss_dssp -------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-C-----CCCCHHHHHHHHHHHH
T ss_pred -------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-C-----CCCCHHHHHHHHHHHH
Confidence 112345567889988887766555 44322244444333322 1223 1 1123456778999999
Q ss_pred hcCccccc
Q 042296 467 SRSLFQKS 474 (1446)
Q Consensus 467 ~~~ll~~~ 474 (1446)
..|+++..
T Consensus 344 ~~gli~~~ 351 (387)
T 2v1u_A 344 MLGIVKSR 351 (387)
T ss_dssp HTTSEEEE
T ss_pred hCCCeEEE
Confidence 99999873
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.92 E-value=9.2e-10 Score=128.15 Aligned_cols=97 Identities=21% Similarity=0.198 Sum_probs=77.9
Q ss_pred eeEEEEeCCCCccccCc-ccc-CCCCCceeeccCccccccC-cccccccccceeeccCccccccccc-cccCcccceeec
Q 042296 572 RLKVFSLCGYQISELPN-SVG-DLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLN 647 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~-~i~-~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 647 (1446)
.+++|+|++|.|+.+|. .+. ++.+|++|+|++|+|+.+| ..|.++++|++|+|++|. +..+|. .|..+++|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEE
Confidence 47889999999998854 455 8999999999999999886 469999999999999985 666654 589999999999
Q ss_pred ccCCCccccc-CCccccccccccc
Q 042296 648 NSTTNSLEEM-PRGIGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~-p~~i~~L~~L~~L 670 (1446)
+++|. +..+ |..++.+++|+.|
T Consensus 119 L~~N~-i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 119 LYNNH-IVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCc-ccEECHHHhCCcccCCEE
Confidence 99998 5554 3445555555554
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=1.7e-09 Score=112.85 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=59.1
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccCcc--cccccccceeeccCccccccccccccCcccceeecccCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDS--INKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 651 (1446)
++++++++.++.+|..+.. +|++|++++|.|+.+|.. ++++++|++|+|++|......|..|.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4667777777777665543 677777777777766543 667777777777776433333566777777777777777
Q ss_pred CcccccCC-ccccccccccc
Q 042296 652 NSLEEMPR-GIGKLTFLQTL 670 (1446)
Q Consensus 652 ~~~~~~p~-~i~~L~~L~~L 670 (1446)
. +..+|. .++.+++|++|
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEE
T ss_pred c-CCccCHHHhcCCCCCCEE
Confidence 6 444443 25555555555
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.90 E-value=1.1e-07 Score=112.39 Aligned_cols=267 Identities=14% Similarity=0.067 Sum_probs=163.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC--
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF-DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS-- 263 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-- 263 (1446)
.+.|+|.+|+||||+|+.+++. ..... ..++|+.++...+...+...++..++...........++...+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhc
Confidence 3579999999999999999873 33221 246777777777888999999998876543233455666666666553
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCC----CCcEEEEEccChHHHHhhC-------CCCceecCCCChHhHHHHHH
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGA----PGSKIVVTTRNQAVVAIMG-------TVPAYPLKELSDEDCLNVFT 332 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~----~gs~iivTtR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~ 332 (1446)
+++.+||+|+++..+......+...+.... .+..||+||+.......+. ....+.+.+++.++..+++.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 678999999997765444555544432211 4678888888765443321 12369999999999999998
Q ss_pred hhccCCC-CCCCChhHHHHHHHHHHHh---------CCchhHHHHHH-hhhc-----CCC--ChhHHHHHHhccccCCCC
Q 042296 333 QHSLGTR-DFNMHKSLEEIGKKIVIKC---------NGLPLAAKTLG-GLLR-----GKT--DQRDWEDVLNCKIWDLPE 394 (1446)
Q Consensus 333 ~~a~~~~-~~~~~~~~~~~~~~i~~~c---------~glPlai~~~~-~~L~-----~~~--~~~~w~~~l~~~~~~~~~ 394 (1446)
..+.... .... -.+....|++.+ +|.|-.+..+. .... +.. +.+....+....
T Consensus 204 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~------ 274 (389)
T 1fnn_A 204 DRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV------ 274 (389)
T ss_dssp HHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH------
T ss_pred HHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH------
Confidence 7753210 1111 145667788888 78764433332 2211 111 223333332211
Q ss_pred cccccchhhhhhhccCCHHHHHHHhhhccCC---CCceeChHHHHHHHHh----CCCCCCCCCCCCHHHHHHHHHHHHHh
Q 042296 395 ERCDILPALKVSYYYLSPRLKQCFTYCSLLP---KDYEFKEEEIILLWIA----VGFLDQEDNGRESEDLGHMFFKELHS 467 (1446)
Q Consensus 395 ~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~i~~~~li~~w~a----~g~i~~~~~~~~~~~~~~~~~~~L~~ 467 (1446)
....+.-.+..|+.+.+..+..++.+. .+..+....+...+.. .|.. .-.......++++|.+
T Consensus 275 ----~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~l~~L~~ 344 (389)
T 1fnn_A 275 ----LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER------PRVHSQLWSYLNDLRE 344 (389)
T ss_dssp ----SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC------CCCHHHHHHHHHHHHH
T ss_pred ----hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHHHh
Confidence 112233446778888888877776553 2214555555554432 2211 1123456788999999
Q ss_pred cCccccc
Q 042296 468 RSLFQKS 474 (1446)
Q Consensus 468 ~~ll~~~ 474 (1446)
+++|...
T Consensus 345 ~gli~~~ 351 (389)
T 1fnn_A 345 KGIVETR 351 (389)
T ss_dssp TTSSEEE
T ss_pred CCCeEEe
Confidence 9999874
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=2.8e-09 Score=111.15 Aligned_cols=93 Identities=20% Similarity=0.286 Sum_probs=81.0
Q ss_pred EEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCcccccccc-ccccCcccceeecccCCC
Q 042296 574 KVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLC-ADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 574 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 652 (1446)
++++++++.++.+|..+. .+|++|+|++|.|+.+|..|.++++|++|+|++|. +..+| ..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc
Confidence 578999999999998775 68999999999999999999999999999999985 66665 569999999999999998
Q ss_pred cccccCC-ccccccccccc
Q 042296 653 SLEEMPR-GIGKLTFLQTL 670 (1446)
Q Consensus 653 ~~~~~p~-~i~~L~~L~~L 670 (1446)
+..+|. .++.+++|++|
T Consensus 90 -l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEE
T ss_pred -cCEeCHHHhCCCCCCCEE
Confidence 677664 47777777777
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=2.1e-09 Score=112.17 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=69.4
Q ss_pred eeEEEEeCCCCccccCcc--ccCCCCCceeeccCcccccc-CcccccccccceeeccCccccccc-cccccCcccceeec
Q 042296 572 RLKVFSLCGYQISELPNS--VGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLN 647 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~~--i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~ 647 (1446)
.|++|++++|.++.+|.. |+.+++|++|+|++|+|+.+ |..|.++++|++|+|++|. +..+ |..|..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEE
Confidence 567777777777777543 77777888888888877766 5677777888888887774 4444 34477777888888
Q ss_pred ccCCCcccccCCcccccccccccC
Q 042296 648 NSTTNSLEEMPRGIGKLTFLQTLC 671 (1446)
Q Consensus 648 l~~~~~~~~~p~~i~~L~~L~~L~ 671 (1446)
+++|......|..++.+++|++|.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEE
Confidence 877773333456677777777763
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.85 E-value=2.2e-09 Score=110.47 Aligned_cols=99 Identities=25% Similarity=0.334 Sum_probs=86.5
Q ss_pred hcCceeEEEEeCCCCccccCccccCCC-CCceeeccCccccccCcccccccccceeeccCccccccccccc-cCccccee
Q 042296 568 LKLHRLKVFSLCGYQISELPNSVGDLR-YLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADM-GNLIKLHH 645 (1446)
Q Consensus 568 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~ 645 (1446)
.++..|+.|++++|.++.+|. +..+. +|++|+|++|.++.+ ..++++++|++|++++| .+..+|..+ ..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 378899999999999999875 55555 999999999999988 67999999999999998 577888665 89999999
Q ss_pred ecccCCCcccccCC--ccccccccccc
Q 042296 646 LNNSTTNSLEEMPR--GIGKLTFLQTL 670 (1446)
Q Consensus 646 L~l~~~~~~~~~p~--~i~~L~~L~~L 670 (1446)
|++++|. +..+|. .++.+++|+.|
T Consensus 93 L~L~~N~-i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 93 LILTNNS-LVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp EECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred EECCCCc-CCcchhhHhhhcCCCCCEE
Confidence 9999998 788886 68888888887
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.84 E-value=2.1e-09 Score=131.85 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=77.2
Q ss_pred eeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecccCC
Q 042296 572 RLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 572 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 651 (1446)
.|++|+|++|.++.+|. |+.+++|++|+|++|.|+.+|..|+++++|++|+|++| .+..+| .+++|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 47788888888888876 88888888888888888888888888888888888887 466677 7888888888888888
Q ss_pred Cccccc--CCccccccccccc
Q 042296 652 NSLEEM--PRGIGKLTFLQTL 670 (1446)
Q Consensus 652 ~~~~~~--p~~i~~L~~L~~L 670 (1446)
. +..+ |..++.|++|++|
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEE
T ss_pred C-CCCCCCcHHHhcCCCCCEE
Confidence 7 6666 7778888888877
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=7.4e-09 Score=105.72 Aligned_cols=92 Identities=22% Similarity=0.395 Sum_probs=42.1
Q ss_pred EEEeCCCCccccCccccCCCCCceeeccCcccccc-CcccccccccceeeccCcccccccccc-ccCcccceeecccCCC
Q 042296 575 VFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 575 ~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 652 (1446)
.++++++.++.+|..+. .+|++|+|++|+|+.+ |..|+++++|++|+|++| .+..+|.. |.++++|++|++++|.
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 44444444444444432 4445555555544444 334444455555555444 24444433 3444555555554444
Q ss_pred cccccCCc-cccccccccc
Q 042296 653 SLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 653 ~~~~~p~~-i~~L~~L~~L 670 (1446)
+..+|.. ++.+++|++|
T Consensus 93 -l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEE
T ss_pred -cceeCHHHhccccCCCEE
Confidence 4444433 4444444444
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.79 E-value=4.9e-08 Score=115.42 Aligned_cols=266 Identities=14% Similarity=0.114 Sum_probs=152.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC---CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF---DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
.+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...+...++.+++........+..+....+.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 124 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR 124 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4579999999999999999983 33333 246777776667778888888888765433233345666666666653
Q ss_pred --CceEEEEEECCCCCC----hhhHHHhcccccC-CCCCcEEEEEccChHHHHhhC-------CCCceecCCCChHhHHH
Q 042296 264 --QKKFLLVLDDVWNEN----YNDWIDLSRPFEA-GAPGSKIVVTTRNQAVVAIMG-------TVPAYPLKELSDEDCLN 329 (1446)
Q Consensus 264 --~~~~LlVlDdv~~~~----~~~~~~~~~~l~~-~~~gs~iivTtR~~~v~~~~~-------~~~~~~l~~L~~~~~~~ 329 (1446)
+++.+||+|+++... ...+..+...+.. ...+..+|+||+.......+. ....+.+++++.++..+
T Consensus 125 ~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~ 204 (386)
T 2qby_A 125 DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELED 204 (386)
T ss_dssp TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHH
T ss_pred ccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHH
Confidence 458999999985421 1223333322211 224567788887654332221 11479999999999999
Q ss_pred HHHhhccCC-CCCCCChhHHHHHHHHHHHhC---CchhH-HHHHHhhhc-----C--CCChhHHHHHHhccccCCCCccc
Q 042296 330 VFTQHSLGT-RDFNMHKSLEEIGKKIVIKCN---GLPLA-AKTLGGLLR-----G--KTDQRDWEDVLNCKIWDLPEERC 397 (1446)
Q Consensus 330 lf~~~a~~~-~~~~~~~~~~~~~~~i~~~c~---glPla-i~~~~~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~ 397 (1446)
++...+... ...... .+....+++.++ |.|.. +.++..... + .-+.+.+..++...
T Consensus 205 il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~--------- 272 (386)
T 2qby_A 205 ILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI--------- 272 (386)
T ss_dssp HHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH---------
T ss_pred HHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH---------
Confidence 998764211 111122 345566777776 98874 333332221 1 11344444444321
Q ss_pred ccchhhhhhhccCCHHHHHHHhhhccCCC-C-ceeChHHHHHHH--Hh--CCCCCCCCCCCCHHHHHHHHHHHHHhcCcc
Q 042296 398 DILPALKVSYYYLSPRLKQCFTYCSLLPK-D-YEFKEEEIILLW--IA--VGFLDQEDNGRESEDLGHMFFKELHSRSLF 471 (1446)
Q Consensus 398 ~~~~~l~~sy~~L~~~~k~cf~~~~~fp~-~-~~i~~~~li~~w--~a--~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll 471 (1446)
....+.-.+..+|.+.+..+..++...+ + ..+....+.+.. ++ .| +. .........+++.|.+.++|
T Consensus 273 -~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~-----~~~~~~~~~~l~~L~~~gli 345 (386)
T 2qby_A 273 -ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VE-----AVTQRRVSDIINELDMVGIL 345 (386)
T ss_dssp -HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CC-----CCCHHHHHHHHHHHHHHTSE
T ss_pred -hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CC-----CCCHHHHHHHHHHHHhCCCE
Confidence 1124555677888888877766653211 1 123333332211 11 12 11 11234567789999999999
Q ss_pred cc
Q 042296 472 QK 473 (1446)
Q Consensus 472 ~~ 473 (1446)
+.
T Consensus 346 ~~ 347 (386)
T 2qby_A 346 TA 347 (386)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=5e-09 Score=106.96 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=80.9
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccCcc-cccccccceeeccCcccccccccc-ccCcccceeec
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILPDS-INKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 647 (1446)
+.|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |.++++|++|+|++| .+..+|.. |..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 6789999999999988 67899999999999999999999875 589999999999998 57788766 89999999999
Q ss_pred ccCCCcccccCCcccccc
Q 042296 648 NSTTNSLEEMPRGIGKLT 665 (1446)
Q Consensus 648 l~~~~~~~~~p~~i~~L~ 665 (1446)
+++|. +...|..+..+.
T Consensus 112 L~~N~-~~c~~~~~~~l~ 128 (174)
T 2r9u_A 112 LYNNP-WDCECRDIMYLR 128 (174)
T ss_dssp CCSSC-BCTTBGGGHHHH
T ss_pred eCCCC-cccccccHHHHH
Confidence 99998 666665554443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=9.3e-09 Score=104.66 Aligned_cols=95 Identities=24% Similarity=0.373 Sum_probs=67.5
Q ss_pred eEEEEeCCCCccccCccccCCCCCceeeccCcccccc-CcccccccccceeeccCcccccccccc-ccCcccceeecccC
Q 042296 573 LKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEIL-PDSINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNST 650 (1446)
Q Consensus 573 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~ 650 (1446)
.++++++++.++.+|..+. .+|++|+|++|+|+.+ |..|.++++|++|+|++| .+..+|.. |.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 3567777777777776664 6777788888877766 456777778888888776 35566554 57777788888877
Q ss_pred CCcccccCCc-ccccccccccC
Q 042296 651 TNSLEEMPRG-IGKLTFLQTLC 671 (1446)
Q Consensus 651 ~~~~~~~p~~-i~~L~~L~~L~ 671 (1446)
|. +..+|.. ++.+++|++|.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEE
T ss_pred Cc-cCEeCHHHhcCCCCCCEEE
Confidence 76 6666654 67777777763
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.74 E-value=2.8e-10 Score=119.77 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=89.4
Q ss_pred HHHHhhhcCceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcc
Q 042296 562 SILQRLLKLHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLI 641 (1446)
Q Consensus 562 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 641 (1446)
.+|..+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++|++|++++| .+..+| .+..++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLV 115 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCC
Confidence 34456678999999999999999998 889999999999999999999988888999999999998 577777 688999
Q ss_pred cceeecccCCCcccccCC--ccccccccccc
Q 042296 642 KLHHLNNSTTNSLEEMPR--GIGKLTFLQTL 670 (1446)
Q Consensus 642 ~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L 670 (1446)
+|++|++++|. +..+|. .++.+++|++|
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 99999999987 666654 57777777777
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.72 E-value=3.6e-08 Score=101.45 Aligned_cols=83 Identities=20% Similarity=0.293 Sum_probs=64.3
Q ss_pred eEEEEeCCCCccccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCcccccccccc-ccCcccceeecccC
Q 042296 573 LKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNST 650 (1446)
Q Consensus 573 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~ 650 (1446)
.+.+++++++++.+|..+. .+|++|++++|+++.+|. .++++++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 3578888888888886654 688999999998887765 4688899999999887 46666654 68888888888888
Q ss_pred CCcccccCC
Q 042296 651 TNSLEEMPR 659 (1446)
Q Consensus 651 ~~~~~~~p~ 659 (1446)
|. +..+|.
T Consensus 86 N~-l~~~~~ 93 (177)
T 2o6r_A 86 NK-LQSLPN 93 (177)
T ss_dssp SC-CCCCCT
T ss_pred CC-ccccCH
Confidence 87 555543
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=6.1e-08 Score=111.17 Aligned_cols=100 Identities=11% Similarity=0.174 Sum_probs=65.1
Q ss_pred Hhhhc-CceeEEEEeCCCCccccCccccCCCCCceeeccCccccccCc-cccc--------ccccceeeccCcccccccc
Q 042296 565 QRLLK-LHRLKVFSLCGYQISELPNSVGDLRYLRYLNLSRTCIEILPD-SINK--------LYNLHTLLLEDCDRLKKLC 634 (1446)
Q Consensus 565 ~~~~~-l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~--------L~~L~~L~L~~~~~~~~lp 634 (1446)
..+.. +++|++|||++|.|......-+.+..++++.+..+. +|+ .|.+ +.+|+.|+|.+ .+..++
T Consensus 42 ~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~ 116 (329)
T 3sb4_A 42 RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIE 116 (329)
T ss_dssp HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT--TCCEEC
T ss_pred HHHHHhhccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc--cccchh
Confidence 34443 889999999999988321112233335666666663 443 5666 88999999987 467776
Q ss_pred c-cccCcccceeecccCCCcccccCCc-cccccccccc
Q 042296 635 A-DMGNLIKLHHLNNSTTNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 635 ~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L 670 (1446)
. .|.++++|+.|++.+|. +..++.. +....++..+
T Consensus 117 ~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 117 DAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFI 153 (329)
T ss_dssp TTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEE
T ss_pred HHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEe
Confidence 4 48888999999998887 5555543 5555555444
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.70 E-value=5.6e-10 Score=117.44 Aligned_cols=95 Identities=26% Similarity=0.284 Sum_probs=79.7
Q ss_pred eEEEEeCCC--CccccCccccCCCCCceeeccCccccccCcccccccccceeeccCccccccccccccCcccceeecccC
Q 042296 573 LKVFSLCGY--QISELPNSVGDLRYLRYLNLSRTCIEILPDSINKLYNLHTLLLEDCDRLKKLCADMGNLIKLHHLNNST 650 (1446)
Q Consensus 573 Lr~L~L~~~--~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 650 (1446)
|+.+.+.+. .++.+|..++.+++|++|+|++|.++.+| .+.++++|++|++++| .+..+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcC
Confidence 344444443 45666668999999999999999999999 8999999999999998 5788998888899999999999
Q ss_pred CCcccccCCcccccccccccC
Q 042296 651 TNSLEEMPRGIGKLTFLQTLC 671 (1446)
Q Consensus 651 ~~~~~~~p~~i~~L~~L~~L~ 671 (1446)
|. +..+| .++.+++|+.|+
T Consensus 103 N~-l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 103 NQ-IASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp EE-CCCHH-HHHHHHHSSEEE
T ss_pred Cc-CCcCC-ccccCCCCCEEE
Confidence 97 77777 688888888873
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.70 E-value=2.2e-08 Score=103.00 Aligned_cols=98 Identities=31% Similarity=0.459 Sum_probs=71.1
Q ss_pred ceeEEEEeCCCCccccCc-cccCCCCCceeeccCccccccCcc-cccccccceeeccCcccccccccc-ccCcccceeec
Q 042296 571 HRLKVFSLCGYQISELPN-SVGDLRYLRYLNLSRTCIEILPDS-INKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 647 (1446)
+.|++|++++|.++.+|. .|+.+.+|++|++++|.++.+|.. ++++++|++|++++|. +..+|.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 467778888888777754 457788888888888888777653 5778888888888874 5555544 67788888888
Q ss_pred ccCCCcccccCCc-cccccccccc
Q 042296 648 NSTTNSLEEMPRG-IGKLTFLQTL 670 (1446)
Q Consensus 648 l~~~~~~~~~p~~-i~~L~~L~~L 670 (1446)
+++|. +..+|.. +..+++|++|
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CcCCc-ceEeCHHHhcCCcccCEE
Confidence 88876 6667665 4667777776
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=2.1e-07 Score=106.67 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=38.2
Q ss_pred CCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCCCCC-Cccccc-ceeccc
Q 042296 1206 NNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPEGGL-PSANLT-KLQITW 1265 (1446)
Q Consensus 1206 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~~~L~-~L~l~~ 1265 (1446)
.+++|+.+++++|.....-+..|.++++|+++++.++ ++.++...+ .+++|+ .+++.+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 4788888888876544333445788888888888775 677765433 345565 555554
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.62 E-value=3.5e-08 Score=100.40 Aligned_cols=86 Identities=28% Similarity=0.363 Sum_probs=75.6
Q ss_pred ceeEEEEeCCCCcccc-CccccCCCCCceeeccCccccccCcc-cccccccceeeccCccccccccc-cccCcccceeec
Q 042296 571 HRLKVFSLCGYQISEL-PNSVGDLRYLRYLNLSRTCIEILPDS-INKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLN 647 (1446)
Q Consensus 571 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 647 (1446)
+.|++|+|++|.|+.+ |..|.++.+|++|+|++|+|+.+|.. |.++++|++|+|++| .+..+|. .|.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 6789999999999988 77899999999999999999999865 689999999999998 5777776 489999999999
Q ss_pred ccCCCcccccC
Q 042296 648 NSTTNSLEEMP 658 (1446)
Q Consensus 648 l~~~~~~~~~p 658 (1446)
+++|. +...+
T Consensus 109 L~~N~-~~c~c 118 (170)
T 3g39_A 109 LLNNP-WDCAC 118 (170)
T ss_dssp CCSSC-BCTTB
T ss_pred eCCCC-CCCCc
Confidence 99997 54444
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.60 E-value=2.8e-07 Score=101.14 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=74.2
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHH-Hh-hCCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVV-AI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~-~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++.+||+||++..+...+..+...+.....+..+|+||+..... .. ......+.+++++.++..+++...+.....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 3568999999997765566667766665555678899998764311 11 122357899999999999999887643221
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHHHHHHhhh
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLL 372 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L 372 (1446)
... .+....|++.++|.|..+..+...+
T Consensus 204 -~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 -AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp -CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 3556789999999999887766543
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=1.3e-07 Score=109.52 Aligned_cols=92 Identities=18% Similarity=0.148 Sum_probs=55.1
Q ss_pred EEeCCC-CccccCccccCCCCCceeeccC-ccccccC-cccccccccceeeccCccccccc-cccccCcccceeecccCC
Q 042296 576 FSLCGY-QISELPNSVGDLRYLRYLNLSR-TCIEILP-DSINKLYNLHTLLLEDCDRLKKL-CADMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 576 L~L~~~-~i~~lp~~i~~L~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~ 651 (1446)
++++++ .++.+|. |+.+.+|++|+|++ |.|+.+| ..|++|.+|++|+|++|. +..+ |..|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 456665 5666666 66666666666664 6666665 356666666666666663 4333 344666666666666666
Q ss_pred CcccccCCccccccccccc
Q 042296 652 NSLEEMPRGIGKLTFLQTL 670 (1446)
Q Consensus 652 ~~~~~~p~~i~~L~~L~~L 670 (1446)
. +..+|..+.....|+.|
T Consensus 91 ~-l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQEL 108 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEE
T ss_pred c-cceeCHHHcccCCceEE
Confidence 5 55666543332235555
No 155
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.46 E-value=9.9e-07 Score=94.95 Aligned_cols=160 Identities=14% Similarity=0.038 Sum_probs=96.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCc--eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDL--KAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
+-|+|.+|+|||++|+.+++. ....... .+.+..+...+...+...+........ .-.++
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 102 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP----------------IGGAP 102 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC----------------STTCS
T ss_pred EEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHHHHHHhcccC----------------CCccC
Confidence 479999999999999999873 2222212 233333333333222221111111000 01357
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHH-HHh-hCCCCceecCCCChHhHHHHHHhhccCCCCCCC
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAV-VAI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRDFNM 343 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v-~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~ 343 (1446)
+.+||+||++......+..+...+.....+.++|+||+.... ... ......+.+.+++.++..+++.+.+...+. ..
T Consensus 103 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~ 181 (226)
T 2chg_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-KI 181 (226)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC-CC
Confidence 899999999776555555565555555567889999886531 111 122247899999999999999887632221 11
Q ss_pred ChhHHHHHHHHHHHhCCchhHHHHHH
Q 042296 344 HKSLEEIGKKIVIKCNGLPLAAKTLG 369 (1446)
Q Consensus 344 ~~~~~~~~~~i~~~c~glPlai~~~~ 369 (1446)
. .+....+++.++|.|..+..+.
T Consensus 182 ~---~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 182 T---EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp C---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred C---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1 3556778899999998654443
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=6.1e-07 Score=103.93 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=76.1
Q ss_pred HHHHhhhcCceeEEEEeCC-CCccccC-ccccCCCCCceeeccCccccccC-cccccccccceeeccCcccccccccccc
Q 042296 562 SILQRLLKLHRLKVFSLCG-YQISELP-NSVGDLRYLRYLNLSRTCIEILP-DSINKLYNLHTLLLEDCDRLKKLCADMG 638 (1446)
Q Consensus 562 ~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 638 (1446)
.+|. +..+++|+.|+|++ |.|+.+| ..|++|.+|++|+|++|+|+.+| ..|.+|++|++|+|++| .+..+|..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence 4666 66889999999996 9999986 67999999999999999999875 47899999999999998 5778887654
Q ss_pred CcccceeecccCCC
Q 042296 639 NLIKLHHLNNSTTN 652 (1446)
Q Consensus 639 ~L~~L~~L~l~~~~ 652 (1446)
....|++|++.+|.
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 44449999999987
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.22 E-value=1.7e-06 Score=98.92 Aligned_cols=240 Identities=18% Similarity=0.122 Sum_probs=122.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-|+|.+|+|||++|+.+++. ... ..+++..+......+ +...+...+ .+.
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~----------------------l~~~l~~~~-~~~ 91 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD----------------------LAAILANSL-EEG 91 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH----------------------HHHHHTTTC-CTT
T ss_pred cEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH----------------------HHHHHHHhc-cCC
Confidence 3579999999999999999873 221 223443332222211 111111111 245
Q ss_pred EEEEEECCCCCChhhHHHhcccccCC------------------CCCcEEEEEccChH-HHHhh-CC-CCceecCCCChH
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAG------------------APGSKIVVTTRNQA-VVAIM-GT-VPAYPLKELSDE 325 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~------------------~~gs~iivTtR~~~-v~~~~-~~-~~~~~l~~L~~~ 325 (1446)
.+|++|++..........+...+... .++.++|.||.... +...+ .- ...+.+.+++.+
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 68889998765433333333222211 12456777666432 11111 11 246899999999
Q ss_pred hHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhhcCC--------CChhHHHHHHhccccCCCCccc
Q 042296 326 DCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTLGGLLRGK--------TDQRDWEDVLNCKIWDLPEERC 397 (1446)
Q Consensus 326 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~L~~~--------~~~~~w~~~l~~~~~~~~~~~~ 397 (1446)
+..+++.+.+...+. ... .+....+++.++|.|-.+..+...+... -+.+....++..
T Consensus 172 e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~---------- 237 (324)
T 1hqc_A 172 ELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA---------- 237 (324)
T ss_dssp HHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----------
Confidence 999998887643321 112 3566789999999998776665443221 112233333221
Q ss_pred ccchhhhhhhccCCHHHHHHHhhhc-cCCCC----------ceeChHHHH----HHHHhCCCCCCCCCCCCHHHHHHHHH
Q 042296 398 DILPALKVSYYYLSPRLKQCFTYCS-LLPKD----------YEFKEEEII----LLWIAVGFLDQEDNGRESEDLGHMFF 462 (1446)
Q Consensus 398 ~~~~~l~~sy~~L~~~~k~cf~~~~-~fp~~----------~~i~~~~li----~~w~a~g~i~~~~~~~~~~~~~~~~~ 462 (1446)
+...+..++...+..+.... .|..+ ..+.+..+. ++-+..|++.....+....+.|..||
T Consensus 238 -----~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~ 312 (324)
T 1hqc_A 238 -----LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHL 312 (324)
T ss_dssp -----HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHT
T ss_pred -----hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHH
Confidence 11223344544444443322 22111 112233222 23456777765555556667777777
Q ss_pred H-HHHhcCcccc
Q 042296 463 K-ELHSRSLFQK 473 (1446)
Q Consensus 463 ~-~L~~~~ll~~ 473 (1446)
+ ++.+|+|||+
T Consensus 313 ~~~~~~~~~~~~ 324 (324)
T 1hqc_A 313 GYPPPVGPLLEP 324 (324)
T ss_dssp TCCCCC------
T ss_pred hcCCCCCCCCCC
Confidence 6 7777777764
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=5.3e-06 Score=94.90 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=96.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc-CCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF-DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL-SQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~ 265 (1446)
+-++|++|+||||+|+.+++... ...+ ...+++..+....... .++++..+.... ..+ .++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~---------------~~~~~~~ 107 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQIKHFAQKK---------------LHLPPGK 107 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTHHHHHHHBC---------------CCCCTTC
T ss_pred EEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHHHHHHHhcc---------------ccCCCCC
Confidence 46899999999999999987421 1111 1233333333222211 122222211000 011 356
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHh-hCCCCceecCCCChHhHHHHHHhhccCCCCCCC
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRDFNM 343 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~ 343 (1446)
+.+||+||++......+..+...+.....++++|+||+... +... ......+.+.+++.++..+++...+...+. ..
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~ 186 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV-KY 186 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC-CC
Confidence 89999999987655556566555554456788888887643 1111 122347999999999999999887632211 11
Q ss_pred ChhHHHHHHHHHHHhCCchh-HHHHHHhh
Q 042296 344 HKSLEEIGKKIVIKCNGLPL-AAKTLGGL 371 (1446)
Q Consensus 344 ~~~~~~~~~~i~~~c~glPl-ai~~~~~~ 371 (1446)
. .+.+..|++.++|.|. |+..+...
T Consensus 187 ~---~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 187 T---NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp C---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 3556789999999994 45554433
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.16 E-value=4.5e-05 Score=88.97 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=157.0
Q ss_pred cCCceeecccCcccccccCCCCccccceeeeccCCCchhh-hhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEE
Q 042296 1161 SLEHLEVGICSKLKFLSCSGNLPQALKFICVFRCSKLESI-AERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGI 1239 (1446)
Q Consensus 1161 ~L~~L~l~~c~~L~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 1239 (1446)
+|+.+.+.+ .++.+......-.+|+.+.+.+ .++.+ ...+.+|++|+.+++.+|. +..++...-...+|+.+.+
T Consensus 136 ~L~~i~l~~--~i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCC--CccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEe
Confidence 355555432 2444433222224677777764 44444 3567889999999998754 4445443333688999998
Q ss_pred eccCCCcccCCCCC-CcccccceecccccCccccccc-C--CccceEeeCCCCCcccccccCcCCCCCCCcceEEEccCC
Q 042296 1240 WSCGNLVSFPEGGL-PSANLTKLQITWCDKLEALPEG-M--NSLRELNIGGLASMVCFPVEADGAMFPSNLQSLDIHDTK 1315 (1446)
Q Consensus 1240 ~~c~~l~~lp~~~~-~~~~L~~L~l~~c~~l~~lp~~-l--~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 1315 (1446)
.. .++.++...+ .+++|+.+++.+ +++.++.. + .+|+.+.+.+ .+..++. ..|.-+++|+.+++.++.
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~--~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIAS--RAFYYCPELAEVTTYGST 282 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECT--TTTTTCTTCCEEEEESSC
T ss_pred CC--chheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEECh--hHhhCCCCCCEEEeCCcc
Confidence 74 3777776444 567899998875 45666541 1 5788888843 3444433 234566789999998776
Q ss_pred Cc-chhhhcccCccCCCCCcceeeecCcCCccccCcccccCCCcccccceecccccCCccCccC-CCCCCCcceeecccC
Q 042296 1316 IW-KSLMEWGEGGLNRFSSLQRLSIGGLHDVVSFSPQELGTTLPASLTHLWIYDFQNLECLSSV-GQNLTSLVYLWLYAC 1393 (1446)
Q Consensus 1316 ~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~~~-~~~l~~L~~L~l~~c 1393 (1446)
.. ..+..++...|.++++|+.++|.+ +++.+....+ .-..+|+.+.+.+ ++..++.. +.++ +|+.+++.++
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF--~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL--GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTT--TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred ccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh--cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 43 222234566799999999999974 4666665333 2235788888854 47777654 4777 9999999884
Q ss_pred CCccccCCC---CCCCccceEeccCCchhHHhhccCCCCccccc
Q 042296 1394 PKLKYFSDK---GLPTSLLQLYIKDCPLIEEKCRKDQGQYWHLL 1434 (1446)
Q Consensus 1394 ~~l~~l~~~---~~~~sL~~L~i~~c~~L~~~~~~~~g~~~~~~ 1434 (1446)
.+..++.. +++.+++.|++-.- ..+.++... .|...
T Consensus 356 -~~~~l~~~~F~~~~~~l~~l~vp~~--~~~~y~~a~--~W~~f 394 (401)
T 4fdw_A 356 -TPPQVFEKVWYGFPDDITVIRVPAE--SVEKYKNAN--GWRDF 394 (401)
T ss_dssp -SCCBCCCSSCCCSCTTCCEEEECGG--GHHHHHHST--TGGGG
T ss_pred -CCcccccccccCCCCCccEEEeCHH--HHHHhhhcc--chhhh
Confidence 55666655 45677888877542 344455544 36554
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.12 E-value=0.00012 Score=85.41 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=44.2
Q ss_pred cccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCC--CCCccEEEEeecCCcccCCccccCCCCCCccE
Q 042296 1009 RIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAAL--PSQLRIISIQYCNALKSLPVTWMHDTNTSLET 1086 (1446)
Q Consensus 1009 ~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~p~~~~~~~~~~L~~ 1086 (1446)
+|+.+.+.++ ++.++..+|.+. +|+++.+.+ .++.++...| +++|+.+++.+|. ++.++...+. ..+|+.
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~--~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV--YAGIEE 207 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT--TCCCSE
T ss_pred CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe--ecccCE
Confidence 5777777654 666766666663 577777764 4666665444 5677777776655 4444444333 234666
Q ss_pred EEEE
Q 042296 1087 LKVY 1090 (1446)
Q Consensus 1087 L~l~ 1090 (1446)
+.+.
T Consensus 208 l~lp 211 (401)
T 4fdw_A 208 VLLP 211 (401)
T ss_dssp EECC
T ss_pred EEeC
Confidence 6554
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.09 E-value=0.0001 Score=86.51 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=24.6
Q ss_pred CccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCC
Q 042296 1005 GLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEA 1052 (1446)
Q Consensus 1005 ~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~ 1052 (1446)
..+.+|+++.|.. .++.++..+|.++++|+.+++.+ .++.++..
T Consensus 68 ~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~ 111 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRC 111 (394)
T ss_dssp TTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT
T ss_pred hCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccch
Confidence 3444555555543 35566665666677777776654 24444443
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.89 E-value=0.00038 Score=81.63 Aligned_cols=64 Identities=9% Similarity=0.173 Sum_probs=39.6
Q ss_pred cccc-CccccCCCCCceeeccCccccccCc-ccccccccceeeccCccccccccc-cccCcccceeeccc
Q 042296 583 ISEL-PNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCDRLKKLCA-DMGNLIKLHHLNNS 649 (1446)
Q Consensus 583 i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~ 649 (1446)
++++ ..+|.++.+|+.+.|..+ ++.+++ +|.++.+|+.+++..+ +..++. .|.++.+|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhccc
Confidence 4455 345677777777777643 666643 5677777777777653 555543 36666666665544
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.81 E-value=2e-06 Score=99.49 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=48.7
Q ss_pred CceeEEEEeCCCCcccc-----Ccccc-CCCCCceeeccCccccc--cCcccccccccceeeccCccccccc-cccc---
Q 042296 570 LHRLKVFSLCGYQISEL-----PNSVG-DLRYLRYLNLSRTCIEI--LPDSINKLYNLHTLLLEDCDRLKKL-CADM--- 637 (1446)
Q Consensus 570 l~~Lr~L~L~~~~i~~l-----p~~i~-~L~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~~~~l-p~~i--- 637 (1446)
++.|+.|+|++|.++.. ...+. ...+|++|+|++|.+.. +..-...+.+|++|+|++|. ++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 45677888888877632 12222 22578888888887752 22223456677888888774 3322 1222
Q ss_pred --cCcccceeecccCCC
Q 042296 638 --GNLIKLHHLNNSTTN 652 (1446)
Q Consensus 638 --~~L~~L~~L~l~~~~ 652 (1446)
...++|++|++++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHSTTCCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCC
Confidence 234667788887776
No 164
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.80 E-value=7.3e-05 Score=88.26 Aligned_cols=158 Identities=17% Similarity=0.163 Sum_probs=93.9
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFD--LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
..+.|+|.+|+||||||+.+++ .....|. .+++++. ..+..++...+... .. ..+.+.++
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~------~~----~~~~~~~~ 192 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KL----NEFREKYR 192 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHHHHHHTT------CH----HHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHcc------cH----HHHHHHhc
Confidence 3457999999999999999998 4444442 2344443 23444555544322 11 22333444
Q ss_pred CceEEEEEECCCCCCh--hhHHHhcccccC-CCCCcEEEEEccCh---------HHHHhhCCCCceecCCCChHhHHHHH
Q 042296 264 QKKFLLVLDDVWNENY--NDWIDLSRPFEA-GAPGSKIVVTTRNQ---------AVVAIMGTVPAYPLKELSDEDCLNVF 331 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~--~~~~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 331 (1446)
.+.-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++-.+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4677999999965321 122223332211 13577899988752 23334444467899999999999999
Q ss_pred HhhccCCCCCCCChhHHHHHHHHHHHhCCchhHH
Q 042296 332 TQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAA 365 (1446)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai 365 (1446)
.+.+...+ ...++ +....|++.++|.+-.+
T Consensus 273 ~~~~~~~~-~~i~~---e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 273 RKMLEIEH-GELPE---EVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHHHHT-CCCCT---THHHHHHHHCCSCHHHH
T ss_pred HHHHHHcC-CCCCH---HHHHHHHHhcCCCHHHH
Confidence 88763221 11222 34556888888887544
No 165
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=6.2e-05 Score=86.13 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=93.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH--c-
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF--DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ--L- 262 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~--l- 262 (1446)
+-++|++|+||||+|+.+++. ..... ...+.+..+.......+ +..+ ...... +
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------~~~~~~~~~~ 107 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINVI-REKV------------------KEFARTKPIG 107 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHTT-HHHH------------------HHHHHSCCGG
T ss_pred EEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHHH-HHHH------------------HHHHhhCCcC
Confidence 468999999999999999873 21111 11223333221111100 0011 111111 1
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHH-HHhh-CCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAV-VAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++.+||+||++......+..+...+.....++++|+||....- ...+ .....+.+.+++.++..+++...+...+.
T Consensus 108 ~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~ 187 (327)
T 1iqp_A 108 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 187 (327)
T ss_dssp GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 256889999999876655666666655555567889988876431 1111 11236899999999999999877643221
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHHHHHHh
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAAKTLGG 370 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 370 (1446)
... .+....|++.++|.|-.+..+..
T Consensus 188 -~~~---~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 188 -ELT---EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp -EEC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 111 35567788999999986554443
No 166
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00037 Score=76.93 Aligned_cols=145 Identities=10% Similarity=0.035 Sum_probs=82.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhc---cCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH-
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQD---HFD--LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ- 261 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~---~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~- 261 (1446)
+-|+|.+|+|||++|+.|++...... ... ..+.|......+...+...|++++.+.........+.+...+...
T Consensus 48 lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~ 127 (318)
T 3te6_A 48 FYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP 127 (318)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh
Confidence 36899999999999999998432111 111 245666667778889999999999654321222333333333322
Q ss_pred -cCCceEEEEEECCCCCChhhHHHhcccccC-CCCCc--EEEEEccChHH---------HHhhCCCCceecCCCChHhHH
Q 042296 262 -LSQKKFLLVLDDVWNENYNDWIDLSRPFEA-GAPGS--KIVVTTRNQAV---------VAIMGTVPAYPLKELSDEDCL 328 (1446)
Q Consensus 262 -l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs--~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~ 328 (1446)
-++++++||||+++.-. +-+.+...+.+ ...++ -||.++...+. ...++ ...+.+.+++.+|-.
T Consensus 128 ~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~ 204 (318)
T 3te6_A 128 KAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQ 204 (318)
T ss_dssp GGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHH
T ss_pred hccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHH
Confidence 24678999999996542 11112211110 01222 33444433211 11221 146899999999999
Q ss_pred HHHHhhc
Q 042296 329 NVFTQHS 335 (1446)
Q Consensus 329 ~lf~~~a 335 (1446)
+++.+++
T Consensus 205 ~Il~~Rl 211 (318)
T 3te6_A 205 QMIITRL 211 (318)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888776
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.65 E-value=3.2e-05 Score=84.04 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=86.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+.|+|.+|+||||+|+.+++. .......+.|+.+++-.+. +. . .+ +.+ .++
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----------~~-----~---------~~-~~~-~~~ 105 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----------ST-----A---------LL-EGL-EQF 105 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS----------CG-----G---------GG-TTG-GGS
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH----------HH-----H---------HH-Hhc-cCC
Confidence 3469999999999999999873 3333345677776432110 00 0 00 001 346
Q ss_pred EEEEEECCCCCChhh--HHHhcccccCC-CCC-cEEEEEccCh---------HHHHhhCCCCceecCCCChHhHHHHHHh
Q 042296 267 FLLVLDDVWNENYND--WIDLSRPFEAG-APG-SKIVVTTRNQ---------AVVAIMGTVPAYPLKELSDEDCLNVFTQ 333 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~--~~~~~~~l~~~-~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 333 (1446)
.+||+||++...... ...+...+... ..+ .+||+||+.. .+...+.....+.+.+++.++..+++..
T Consensus 106 ~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~ 185 (242)
T 3bos_A 106 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQR 185 (242)
T ss_dssp SEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHH
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHH
Confidence 799999996543222 22232222110 112 2577777632 2222222235789999999999999988
Q ss_pred hccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 334 HSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
.+...+ .... .+....+++.++|.+-.+..+
T Consensus 186 ~~~~~~-~~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 186 RAAMRG-LQLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHTT-CCCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHcC-CCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 763222 1112 355667888999887665544
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.64 E-value=3.5e-05 Score=88.03 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=29.3
Q ss_pred CCCCCcccEEEEeccCCCcccCCCCCCcccccceecccccCcc----ccc-ccCCccceEeeC
Q 042296 1228 LHKLRHLQEVGIWSCGNLVSFPEGGLPSANLTKLQITWCDKLE----ALP-EGMNSLRELNIG 1285 (1446)
Q Consensus 1228 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~c~~l~----~lp-~~l~~L~~L~l~ 1285 (1446)
+..+|+|++|+|++|..+ .++. ...++|++|++..|..-. .+. ..+++|++|++.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 345667777777766322 2332 225677777776543211 111 145677777764
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.61 E-value=0.0015 Score=76.51 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=15.4
Q ss_pred CccccccEEEeecc--cCccccCccccccCCcccEEEe
Q 042296 1005 GLSCRIEYLELINC--QGLVKLPQTSLSLINSLKEIGI 1040 (1446)
Q Consensus 1005 ~~~~~L~~L~l~~~--~~l~~lp~~~~~~l~~L~~L~l 1040 (1446)
..+.+|+.+.+..+ ..++.+...+|.++.+|+.+.+
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~ 121 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPI 121 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGG
T ss_pred hCCccCceEeecCCCCCeeeEechhhchhcccceeecc
Confidence 34444444444433 1234444444444444444433
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.59 E-value=2.7e-05 Score=88.99 Aligned_cols=63 Identities=27% Similarity=0.168 Sum_probs=37.9
Q ss_pred hhhhhcCCCCccEEEeccccCccccCccCCCCCcccEEEEeccCCCcccCCCC--CCcccccceeccc
Q 042296 1200 IAERLDNNTSLEVFKIGCCDNLKILPGGLHKLRHLQEVGIWSCGNLVSFPEGG--LPSANLTKLQITW 1265 (1446)
Q Consensus 1200 ~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~--~~~~~L~~L~l~~ 1265 (1446)
+...+..+++|+.|++++|... .++. +. +++|++|+|..|..-......+ ..+++|+.|+++.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 4455677888888888877433 2333 33 7888888888764211111111 1457888888753
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.56 E-value=0.00035 Score=81.49 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=67.1
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHh-hCCCCceecCCCChHhHHHHHHhhccCCCC
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRD 340 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 340 (1446)
.+++.+||+||++..+...+..+...+.....+..+|++|.... +... ......+.+.+++.++..+++.+.+...+.
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~ 196 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 35678999999977655556666555544445677777776432 1111 122357899999999999999876532111
Q ss_pred CCCChhHHHHHHHHHHHhCCchhHHHHHH
Q 042296 341 FNMHKSLEEIGKKIVIKCNGLPLAAKTLG 369 (1446)
Q Consensus 341 ~~~~~~~~~~~~~i~~~c~glPlai~~~~ 369 (1446)
... .+....|++.++|.|..+..+.
T Consensus 197 -~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 197 -AHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp -CBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 111 3456779999999998776554
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.53 E-value=0.00034 Score=79.57 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=92.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH--c-C
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFD-LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ--L-S 263 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~--l-~ 263 (1446)
+-++|.+|+||||+|+.+++... ...+. ..+.+..+..... ....+........ + .
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 100 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI-------------------DVVRHKIKEFARTAPIGG 100 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------------------TTSSHHHHHHHHSCCSSS
T ss_pred EEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------------------HHHHHHHHHHHhcCCCCC
Confidence 46899999999999999987321 11111 1223333321110 1111111111111 1 2
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHh-hCCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAI-MGTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++.+||+|+++.-.......+...+.....++++|+||.... +... ......+.+.+++.++..+++...+...+.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 5688999999977655556666666655556788888886543 1111 122347899999999999998877643221
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKT 367 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~ 367 (1446)
... .+....+++.++|.+-.+..
T Consensus 180 ~i~---~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 180 KIT---EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp CBC---HHHHHHHHHTTTTCHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 111 34566788889998875543
No 173
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=1.8e-05 Score=78.40 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=45.6
Q ss_pred CcceEEEccCCCcchhhhcccCccCCCCCcceeeecCcCCccccCcccccCC--CcccccceecccccCCccCc-cCCCC
Q 042296 1305 NLQSLDIHDTKIWKSLMEWGEGGLNRFSSLQRLSIGGLHDVVSFSPQELGTT--LPASLTHLWIYDFQNLECLS-SVGQN 1381 (1446)
Q Consensus 1305 ~L~~L~l~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~~~~~~~l~~l~-~~~~~ 1381 (1446)
.|++||+++|.+.. .+...+..+++|++|+|++|..+++..-..++.. ...+|++|++++|.+++.-. ..+.+
T Consensus 62 ~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 46677777766322 1222356777888888888876665322111110 01245555555555443211 01234
Q ss_pred CCCcceeecccCCCccc
Q 042296 1382 LTSLVYLWLYACPKLKY 1398 (1446)
Q Consensus 1382 l~~L~~L~l~~c~~l~~ 1398 (1446)
+++|+.|++++|++++.
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 55666666666655553
No 174
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.51 E-value=5.6e-05 Score=81.36 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=56.5
Q ss_pred cCceeEEEEeCCCCcccc---CccccCCCCCceeeccCccccccCccccccc--ccceeeccCccccccccc-------c
Q 042296 569 KLHRLKVFSLCGYQISEL---PNSVGDLRYLRYLNLSRTCIEILPDSINKLY--NLHTLLLEDCDRLKKLCA-------D 636 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~~i~~l---p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lp~-------~ 636 (1446)
+++.|+.|+|++|.|+.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 678888899998888765 35566788888888888888876 3355555 888888888865444442 2
Q ss_pred ccCcccceeec
Q 042296 637 MGNLIKLHHLN 647 (1446)
Q Consensus 637 i~~L~~L~~L~ 647 (1446)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55677777775
No 175
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.45 E-value=7.1e-05 Score=74.22 Aligned_cols=94 Identities=12% Similarity=0.179 Sum_probs=47.5
Q ss_pred CCcceeeecccccchhhhhcccccccccccccccccccCCCcccchhhhhhhccCccccccEEEeecccCccccCccccc
Q 042296 951 PKLEELEIANIDELTYIWQNETRLLQDISSLKRLKIKSCPNLQSLVEEDEQNQLGLSCRIEYLELINCQGLVKLPQTSLS 1030 (1446)
Q Consensus 951 ~~L~~L~i~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~ 1030 (1446)
..|+.|++++|. ++.... ..+..+++|++|++++|..+++.........-...++|++|+|++|..+++-....+.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCC-ccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 357778888775 443322 2344566666666666665554322211100001235666666666555543333344
Q ss_pred cCCcccEEEeccCCCCcc
Q 042296 1031 LINSLKEIGIYNCSSLVC 1048 (1446)
Q Consensus 1031 ~l~~L~~L~l~~c~~l~~ 1048 (1446)
.+++|++|++++|+.++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 556666666666655543
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.38 E-value=0.0012 Score=74.95 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=64.6
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|+++.-+......+...+.....++.+|++|.+.+ +...+ .....+.+.+++.++..+.+.+.+
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------ 180 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------ 180 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------
Confidence 5678999999977655555556555554445677777776643 22222 333578999999999999888775
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
... .+.+..+++.++|.|..+..+
T Consensus 181 ~~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 181 TMS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CCC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 111 344567889999999765443
No 177
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.27 E-value=7.6e-05 Score=86.15 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=62.1
Q ss_pred HHhhh-cCceeEEEEeCCCCcccc-----Cccc-cCCCCCceeeccCccccc-----cCcccccccccceeeccCccccc
Q 042296 564 LQRLL-KLHRLKVFSLCGYQISEL-----PNSV-GDLRYLRYLNLSRTCIEI-----LPDSINKLYNLHTLLLEDCDRLK 631 (1446)
Q Consensus 564 ~~~~~-~l~~Lr~L~L~~~~i~~l-----p~~i-~~L~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~ 631 (1446)
...+. .+++|+.|+|++|.++.. ...+ ....+|++|+|++|.|+. ++..+..+++|++|+|++|. ++
T Consensus 118 ~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~ 196 (372)
T 3un9_A 118 LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LG 196 (372)
T ss_dssp HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CH
T ss_pred HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CC
Confidence 33444 556777777777776532 1112 234667777777777653 44555667777777777774 33
Q ss_pred -----cccccccCcccceeecccCCCcccc-----cCCccccccccccc
Q 042296 632 -----KLCADMGNLIKLHHLNNSTTNSLEE-----MPRGIGKLTFLQTL 670 (1446)
Q Consensus 632 -----~lp~~i~~L~~L~~L~l~~~~~~~~-----~p~~i~~L~~L~~L 670 (1446)
.++..+...++|++|++++|. ++. ++..+...++|++|
T Consensus 197 ~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L 244 (372)
T 3un9_A 197 DEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELL 244 (372)
T ss_dssp HHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred cHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEE
Confidence 234455666777777777776 432 22233344555555
No 178
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.25 E-value=0.003 Score=73.97 Aligned_cols=57 Identities=5% Similarity=0.233 Sum_probs=32.1
Q ss_pred cCccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCC--CCCccEEEEe
Q 042296 1004 LGLSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAAL--PSQLRIISIQ 1064 (1446)
Q Consensus 1004 ~~~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~ 1064 (1446)
+..+.+|+.+.+.. .+..++...+..+.+|+.+.+.. .+..++...+ +..|+.+.+.
T Consensus 110 F~~c~~L~~i~~~~--~~~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 110 FMFCSELTDIPILD--SVTEIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTTCTTCCBCGGGT--TCSEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECC
T ss_pred chhcccceeeccCC--ccceehhhhhhhhcccccccccc--eeeeecccceeccccccccccc
Confidence 44455566555443 35566666677777777777754 3444444333 4556665554
No 179
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.24 E-value=0.021 Score=66.26 Aligned_cols=77 Identities=10% Similarity=0.200 Sum_probs=46.1
Q ss_pred ccccccEEEeecccCccccCccccccCCcccEEEeccCCCCcccCCCCCC-CCccEEEEeecCCcccCCccccCCCCCCc
Q 042296 1006 LSCRIEYLELINCQGLVKLPQTSLSLINSLKEIGIYNCSSLVCFPEAALP-SQLRIISIQYCNALKSLPVTWMHDTNTSL 1084 (1446)
Q Consensus 1006 ~~~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l~~~~~l~~~p~~~~~~~~~~L 1084 (1446)
...+|+.+.+.. .++.++..+|.++.+|+++.+.+ .++.+....|- .+|+.+.+- ..++.++...... .+|
T Consensus 44 ~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c~l~~i~~~--~~l~~I~~~aF~~--~~L 115 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADTKLQSYTGM--ERVKKFGDYVFQG--TDL 115 (379)
T ss_dssp GGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCCCCEEEEC--TTCCEECTTTTTT--CCC
T ss_pred cccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCCCCceEECC--ceeeEeccceecc--CCc
Confidence 445677777764 47788877888888888888864 36666665552 245555443 2344444332222 236
Q ss_pred cEEEEE
Q 042296 1085 ETLKVY 1090 (1446)
Q Consensus 1085 ~~L~l~ 1090 (1446)
+.+.+.
T Consensus 116 ~~i~lp 121 (379)
T 4h09_A 116 DDFEFP 121 (379)
T ss_dssp SEEECC
T ss_pred ccccCC
Confidence 666654
No 180
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.012 Score=68.43 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=26.7
Q ss_pred hcCCCCccEEEeccccCccccC-ccCCCCCcccEEEEeccCCCcccCCCC-CCcccccceec
Q 042296 1204 LDNNTSLEVFKIGCCDNLKILP-GGLHKLRHLQEVGIWSCGNLVSFPEGG-LPSANLTKLQI 1263 (1446)
Q Consensus 1204 ~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l 1263 (1446)
+.++.+|+.+.+.. .+..++ ..|.++++|+.+.+.++ .++.|+... ..+.+|+.+.+
T Consensus 259 F~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEEC
T ss_pred cceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEc
Confidence 44555555555542 233332 23555666666666443 344444322 23344544444
No 181
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=7.7e-05 Score=80.29 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=68.1
Q ss_pred EEeCCCCccccCcc----ccCCCCCceeeccCcccccc---CcccccccccceeeccCccccccccccccCcc--cceee
Q 042296 576 FSLCGYQISELPNS----VGDLRYLRYLNLSRTCIEIL---PDSINKLYNLHTLLLEDCDRLKKLCADMGNLI--KLHHL 646 (1446)
Q Consensus 576 L~L~~~~i~~lp~~----i~~L~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L 646 (1446)
++++.|....++.. ..++++|++|+|++|+|+.+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceE
Confidence 44555544333321 25678999999999999865 4667899999999999984 6655 3455555 99999
Q ss_pred cccCCCcccccCC-------cccccccccccCce
Q 042296 647 NNSTTNSLEEMPR-------GIGKLTFLQTLCNF 673 (1446)
Q Consensus 647 ~l~~~~~~~~~p~-------~i~~L~~L~~L~~~ 673 (1446)
++++|.....+|. .+..+.+|+.|+..
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 9999985445552 25677788877543
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.14 E-value=0.0006 Score=77.44 Aligned_cols=151 Identities=13% Similarity=0.168 Sum_probs=82.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-|+|.+|+||||||+.+++. ....-..+++++. ..+...+...+... ..... ...+. +.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~------~~~~~----~~~~~-~~ 99 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG------TINEF----RNMYK-SV 99 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT------CHHHH----HHHHH-TC
T ss_pred eEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC------cHHHH----HHHhc-CC
Confidence 3469999999999999999973 2221122344543 23344444433211 11222 22222 36
Q ss_pred EEEEEECCCCCCh--hhHHHhcccccC-CCCCcEEEEEccCh---------HHHHhhCCCCceecCCCChHhHHHHHHhh
Q 042296 267 FLLVLDDVWNENY--NDWIDLSRPFEA-GAPGSKIVVTTRNQ---------AVVAIMGTVPAYPLKELSDEDCLNVFTQH 334 (1446)
Q Consensus 267 ~LlVlDdv~~~~~--~~~~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 334 (1446)
-+|++||+..-.. .....+...+.. ...|..||+||... .+...+.....+.+++ +.++..+++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 7999999965422 112223222211 12456788887632 2333333335689999 999999999887
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 335 SLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
+.... ...+ .+....|++.+ |..
T Consensus 179 ~~~~~-~~l~---~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 179 LKEFN-LELR---KEVIDYLLENT-KNV 201 (324)
T ss_dssp HHHTT-CCCC---HHHHHHHHHHC-SSH
T ss_pred HHhcC-CCCC---HHHHHHHHHhC-CCH
Confidence 64322 1222 34456677777 654
No 183
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.09 E-value=0.0061 Score=69.58 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=82.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-|+|.+|+|||++|+.+++. ....| +.+....... .......+.. ..+..
T Consensus 58 vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~----------------------~~~~~~~~~~--~~~~~ 108 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK----------------------SGDLAAILTN--LSEGD 108 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS----------------------HHHHHHHHHT--CCTTC
T ss_pred EEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc----------------------hhHHHHHHHh--ccCCC
Confidence 468999999999999999873 22222 2233221111 1111111111 23557
Q ss_pred EEEEECCCCCChhhHHHhcccccCC------------------CCCcEEEEEccChHH-HHhh-C-CCCceecCCCChHh
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAG------------------APGSKIVVTTRNQAV-VAIM-G-TVPAYPLKELSDED 326 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~------------------~~gs~iivTtR~~~v-~~~~-~-~~~~~~l~~L~~~~ 326 (1446)
+|++|++..........+...+... .++..+|.+|..... ...+ . ....+.+.+++.++
T Consensus 109 vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e 188 (338)
T 3pfi_A 109 ILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSE 188 (338)
T ss_dssp EEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHH
Confidence 8889998765443333333332221 113466666654321 1111 1 12468999999999
Q ss_pred HHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHHHH
Q 042296 327 CLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 327 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
..+++.+.+..... . --.+....|++.+.|.|-.+..+
T Consensus 189 ~~~il~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 189 LALILQKAALKLNK-T---CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp HHHHHHHHHHHTTC-E---ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCC-C---CCHHHHHHHHHHHCcCHHHHHHH
Confidence 99999877632221 1 11455677888899998544433
No 184
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.003 Score=72.76 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=93.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFD-LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
+-++|.+|+||||+|+.+++.......+. ....+..+.......+ .+.+.............. .....-.+++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 134 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFARLTVSKPSKH-----DLENYPCPPY 134 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHHSCCCCCCTT-----HHHHSCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHhhhcccccchh-----hcccCCCCCc
Confidence 57899999999999999987421111122 2233333332233222 222221111100000000 0011112456
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCCCCC
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDFNMH 344 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~ 344 (1446)
-+|++|++..........+...+.......++|++|.... +...+ .....+.+.+++.++..+.+...+...+. ...
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~ 213 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV-KCD 213 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-CCC
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-CCC
Confidence 7999999976654445555555544445677887775432 11111 11236889999999999998877633221 112
Q ss_pred hhHHHHHHHHHHHhCCchhHHHHH
Q 042296 345 KSLEEIGKKIVIKCNGLPLAAKTL 368 (1446)
Q Consensus 345 ~~~~~~~~~i~~~c~glPlai~~~ 368 (1446)
++....|++.++|.|-.+..+
T Consensus 214 ---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 214 ---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ---HHHHHHHHHHTSSCHHHHHHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHH
Confidence 356778999999998764433
No 185
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.04 E-value=0.00028 Score=73.80 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=53.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-|+|.+|+||||||+.+++. .......++|+++. .+...+....... ........+.+ .
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~------~~~~~~~~~~~-----~ 116 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQ------TMNEKLDYIKK-----V 116 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---C------CCHHHHHHHHH-----S
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccc------hHHHHHHHhcC-----C
Confidence 3468999999999999999983 33334456666653 3444444322211 12233333322 2
Q ss_pred EEEEEECCCCCChhhHHH--hcc-cccCC-CCCcEEEEEccCh
Q 042296 267 FLLVLDDVWNENYNDWID--LSR-PFEAG-APGSKIVVTTRNQ 305 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~--~~~-~l~~~-~~gs~iivTtR~~ 305 (1446)
-+|||||++.....+|.. +.. .+... ..+.++|+||...
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 399999997643334322 211 11111 2456788888753
No 186
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.99 E-value=0.00071 Score=69.12 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=55.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+.|+|..|+||||||+.+++.......+ .+++++ ..++...+......... . .....+. +.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~----~--~~~~~~~-----~~ 101 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD----T--KFLKTVL-----NS 101 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC----S--HHHHHHH-----TC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH----H--HHHHHhc-----CC
Confidence 45799999999999999999743212222 234443 34445554444332211 1 2222222 45
Q ss_pred EEEEEECCCCCChhhHH--HhcccccCC-CCCcEEEEEccCh
Q 042296 267 FLLVLDDVWNENYNDWI--DLSRPFEAG-APGSKIVVTTRNQ 305 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~--~~~~~l~~~-~~gs~iivTtR~~ 305 (1446)
-+|||||++....+.|. .+...+... ..|..||+||...
T Consensus 102 ~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 102 PVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp SEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 68999999743333443 222222111 2477899998653
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=0.0026 Score=73.30 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=63.4
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhhccCCCCC
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGTRDF 341 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 341 (1446)
+++-++|+|++..-+......+...+.....+..+|++|.... +...+ .....+++.+++.++..+.+.+.+...+..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4677999999977654445555554443345678888776532 22222 223568999999999999998776322211
Q ss_pred CCChhHHHHHHHHHHHhCCchhHHHHHH
Q 042296 342 NMHKSLEEIGKKIVIKCNGLPLAAKTLG 369 (1446)
Q Consensus 342 ~~~~~~~~~~~~i~~~c~glPlai~~~~ 369 (1446)
-.. .+.+..|++.++|.+-.+..+.
T Consensus 213 ~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp ECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 110 2345678888898876554433
No 188
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.93 E-value=0.00025 Score=72.70 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=47.4
Q ss_pred cCceeEEEEeCCC-Ccc-----ccCccccCCCCCceeeccCccccc-----cCcccccccccceeeccCcccccc-----
Q 042296 569 KLHRLKVFSLCGY-QIS-----ELPNSVGDLRYLRYLNLSRTCIEI-----LPDSINKLYNLHTLLLEDCDRLKK----- 632 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~~----- 632 (1446)
..+.|+.|+|++| .+. .+...+....+|++|+|++|.|.. +...+...++|++|+|++|. ++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHH
Confidence 5566666666666 554 233444555666677777666642 33444555666677776663 322
Q ss_pred ccccccCcccceeecc--cCCC
Q 042296 633 LCADMGNLIKLHHLNN--STTN 652 (1446)
Q Consensus 633 lp~~i~~L~~L~~L~l--~~~~ 652 (1446)
+...+...++|++|++ ++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHhCCCceEEEecCCCCC
Confidence 3444555566666666 5554
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.92 E-value=0.0026 Score=74.72 Aligned_cols=153 Identities=23% Similarity=0.208 Sum_probs=81.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-FDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
+-++|.+|+||||+|+.+++. .... ++.++.. ..... .+.++... ......+++
T Consensus 53 vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~-ir~~~~~a-----------------~~~~~~~~~ 107 (447)
T 3pvs_A 53 MILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKE-IREAIERA-----------------RQNRNAGRR 107 (447)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHH-HHHHHHHH-----------------HHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHH-HHHHHHHH-----------------HHhhhcCCC
Confidence 468999999999999999973 3222 2333221 11211 11111110 011124678
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH--HH-HhhCCCCceecCCCChHhHHHHHHhhccCCCCC--
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA--VV-AIMGTVPAYPLKELSDEDCLNVFTQHSLGTRDF-- 341 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~--v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~-- 341 (1446)
.+|++|++..-.....+.+...+..+ .-.-|..||.+.. +. ........+.+.+++.++..+++.+.+......
T Consensus 108 ~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~ 186 (447)
T 3pvs_A 108 TILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYG 186 (447)
T ss_dssp EEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSST
T ss_pred cEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 89999999765444444444444431 2222333555542 11 111223478899999999999988776431100
Q ss_pred -CCChhHHHHHHHHHHHhCCchhHHH
Q 042296 342 -NMHKSLEEIGKKIVIKCNGLPLAAK 366 (1446)
Q Consensus 342 -~~~~~~~~~~~~i~~~c~glPlai~ 366 (1446)
....--.+....|++.++|.+-.+.
T Consensus 187 ~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 187 GQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred cccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 0011124556678888888775443
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.92 E-value=0.0023 Score=72.02 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=72.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|.+|+|||++|+.+++...........-++.++.. .+.... ...........+... +.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~l~~~~--~g~~~~~~~~~~~~~---~~ 131 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD------------DLVGQY--IGHTAPKTKEVLKRA---MG 131 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG------------GTCCSS--TTCHHHHHHHHHHHH---TT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH------------Hhhhhc--ccccHHHHHHHHHhc---CC
Confidence 3569999999999999988873222222222234444311 111110 111112222222222 34
Q ss_pred EEEEEECCCCC---------ChhhHHHhcccccCCCCCcEEEEEccChHH----------HHhhCCCCceecCCCChHhH
Q 042296 267 FLLVLDDVWNE---------NYNDWIDLSRPFEAGAPGSKIVVTTRNQAV----------VAIMGTVPAYPLKELSDEDC 327 (1446)
Q Consensus 267 ~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v----------~~~~~~~~~~~l~~L~~~~~ 327 (1446)
-+|++|+++.- .......+...+.....+..||.||..... ...+ ...+.+++++.++-
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEEL 209 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHH
Confidence 59999999732 333344555555555556788888864322 1221 15688999999999
Q ss_pred HHHHHhhcc
Q 042296 328 LNVFTQHSL 336 (1446)
Q Consensus 328 ~~lf~~~a~ 336 (1446)
.+++...+.
T Consensus 210 ~~il~~~l~ 218 (309)
T 3syl_A 210 FEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887763
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.91 E-value=0.0033 Score=68.77 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=80.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|.+|+|||++|+.+++. .... .+.+..+.-.+. . ...........+........
T Consensus 41 ~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~~a~~~~~ 99 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV---------------I-GGLGAARVRSLFKEARARAP 99 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS---------------S-TTHHHHHHHHHHHHHHHTCS
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh---------------c-cChhHHHHHHHHHHHHhcCC
Confidence 3468999999999999999873 3222 233443321110 0 00111222222333333567
Q ss_pred EEEEEECCCCCC------------h---hhHHHhcccccC--CCCCcEEEEEccChHHHH-hh-C--C-CCceecCCCCh
Q 042296 267 FLLVLDDVWNEN------------Y---NDWIDLSRPFEA--GAPGSKIVVTTRNQAVVA-IM-G--T-VPAYPLKELSD 324 (1446)
Q Consensus 267 ~LlVlDdv~~~~------------~---~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~-~~-~--~-~~~~~l~~L~~ 324 (1446)
.+|++|+++.-. . .....+...+.. ...+..||.||....... .. . . ...+.+...+.
T Consensus 100 ~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~ 179 (262)
T 2qz4_A 100 CIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL 179 (262)
T ss_dssp EEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCH
T ss_pred eEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCH
Confidence 899999996530 0 111122222211 123566777776543211 11 1 1 23577889999
Q ss_pred HhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchh-HHHH
Q 042296 325 EDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPL-AAKT 367 (1446)
Q Consensus 325 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~ 367 (1446)
++-.+++...+..... . .........+++.+.|.+- .|..
T Consensus 180 ~~r~~il~~~~~~~~~-~--~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 180 QERREIFEQHLKSLKL-T--QSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp HHHHHHHHHHHHHTTC-C--BTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-C--cchhhHHHHHHHHCCCCCHHHHHH
Confidence 9999998877633221 1 1112234678888888754 4433
No 192
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.91 E-value=0.0043 Score=68.21 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=75.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|.+|+|||++|+.+++. ... . .+.+..+.. +.+. . .......+...+......+..
T Consensus 67 vLl~G~~GtGKT~la~~ia~~--~~~--~-~~~i~~~~~-------------~~g~-~-~~~~~~~~~~~~~~~~~~~~~ 126 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAEE--SNF--P-FIKICSPDK-------------MIGF-S-ETAKCQAMKKIFDDAYKSQLS 126 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--HTC--S-EEEEECGGG-------------CTTC-C-HHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEECCCCCcHHHHHHHHHHH--hCC--C-EEEEeCHHH-------------hcCC-c-hHHHHHHHHHHHHHHHhcCCc
Confidence 468999999999999999973 221 1 122222210 1000 0 000011222333334456789
Q ss_pred EEEEECCCCC---------ChhhH-HHhccccc---CCCCCcEEEEEccChHHHHhh---CC-CCceecCCCCh-HhHHH
Q 042296 268 LLVLDDVWNE---------NYNDW-IDLSRPFE---AGAPGSKIVVTTRNQAVVAIM---GT-VPAYPLKELSD-EDCLN 329 (1446)
Q Consensus 268 LlVlDdv~~~---------~~~~~-~~~~~~l~---~~~~gs~iivTtR~~~v~~~~---~~-~~~~~l~~L~~-~~~~~ 329 (1446)
+|++|+++.- ....+ ..+...+. .......||.||...+..... +. ...+.+++++. ++-.+
T Consensus 127 vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~ 206 (272)
T 1d2n_A 127 CVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLE 206 (272)
T ss_dssp EEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHH
T ss_pred EEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHH
Confidence 9999998431 01112 22222222 122345577788877554432 11 24578888888 66666
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHhCC
Q 042296 330 VFTQHSLGTRDFNMHKSLEEIGKKIVIKCNG 360 (1446)
Q Consensus 330 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g 360 (1446)
++.+.. ... .+....|++.+.|
T Consensus 207 i~~~~~------~~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 207 ALELLG------NFK---DKERTTIAQQVKG 228 (272)
T ss_dssp HHHHHT------CSC---HHHHHHHHHHHTT
T ss_pred HHHhcC------CCC---HHHHHHHHHHhcC
Confidence 655431 111 3456678888887
No 193
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.89 E-value=0.0017 Score=72.21 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=79.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-|+|.+|+|||++|+.+++. ....| +.+..+.- .... ...........+......++.
T Consensus 54 ~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~~ 112 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSEL--------------VKKF--IGEGASLVKDIFKLAKEKAPS 112 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGG--------------CCCS--TTHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHH--------------HHhc--cchHHHHHHHHHHHHHHcCCe
Confidence 568999999999999999873 22221 22222111 0000 001111222222333345668
Q ss_pred EEEEECCCCC-----------Ch---hhHHHhccccc--CCCCCcEEEEEccChHHHH-h-hC---CCCceecCCCChHh
Q 042296 268 LLVLDDVWNE-----------NY---NDWIDLSRPFE--AGAPGSKIVVTTRNQAVVA-I-MG---TVPAYPLKELSDED 326 (1446)
Q Consensus 268 LlVlDdv~~~-----------~~---~~~~~~~~~l~--~~~~gs~iivTtR~~~v~~-~-~~---~~~~~~l~~L~~~~ 326 (1446)
+|++|+++.- .. .....+...+. ....+..||.||...+... . .. ....+.+...+.++
T Consensus 113 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 113 IIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp EEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred EEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 9999999431 00 11111221111 1224677888887543221 1 11 12368899999999
Q ss_pred HHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCc-hhHHHH
Q 042296 327 CLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGL-PLAAKT 367 (1446)
Q Consensus 327 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~ 367 (1446)
..+++...+.... ...... ...+++...|. |-.+..
T Consensus 193 r~~il~~~~~~~~-~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 193 RLEILKIHTRKMN-LAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp HHHHHHHHHTTSC-BCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 9999988764322 112222 34466677664 434443
No 194
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.0015 Score=79.03 Aligned_cols=167 Identities=13% Similarity=0.142 Sum_probs=86.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-C-CCCHHHHHHHHHHHcCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV-D-SLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~-~~~~~~~~~~l~~~l~~ 264 (1446)
.+-|+|++|+||||+|+.+++.. . + .++.+..+...... +....+......... . ...... .....+
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~ 147 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQNASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE-----AQNLNG 147 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEECTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC---------CCSST
T ss_pred EEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEeCCCcchHH-HHHHHHHHHhccccHHHHHhhhhh-----hhhccC
Confidence 45789999999999999999732 1 1 23334444433332 223322222111100 0 000000 001236
Q ss_pred ceEEEEEECCCCCCh---hhHHHhcccccCCCCCcEEEEEccChH---HHHhhCCCCceecCCCChHhHHHHHHhhccCC
Q 042296 265 KKFLLVLDDVWNENY---NDWIDLSRPFEAGAPGSKIVVTTRNQA---VVAIMGTVPAYPLKELSDEDCLNVFTQHSLGT 338 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~~---~~~~~~~~~l~~~~~gs~iivTtR~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 338 (1446)
++.+||+|+++.-.. ..+..+...+.. .+..||+++.... +.........+.+.+++.++..+.+...+...
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~ 225 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIRE 225 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 788999999965422 112333333322 2334665554322 21111222468999999999999887766432
Q ss_pred CCCCCChhHHHHHHHHHHHhCC-chhHHHHHHh
Q 042296 339 RDFNMHKSLEEIGKKIVIKCNG-LPLAAKTLGG 370 (1446)
Q Consensus 339 ~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 370 (1446)
+..-.+ +....|++.++| ++-|+..+..
T Consensus 226 ~~~i~~----~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 226 KFKLDP----NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp TCCCCT----THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCCCH----HHHHHHHHHcCCcHHHHHHHHHH
Confidence 211122 235668888998 5556665543
No 195
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.80 E-value=0.00059 Score=69.85 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=78.5
Q ss_pred ccCCCCcceeccccc-ccCCCCcchhHHHHhhhcCceeEEEEeCCCCccc-----cCccccCCCCCceeeccCccccc--
Q 042296 537 FDDTEHLRTFLPVML-SNCWGGYLAYSILQRLLKLHRLKVFSLCGYQISE-----LPNSVGDLRYLRYLNLSRTCIEI-- 608 (1446)
Q Consensus 537 ~~~~~~Lr~L~~~~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~~-- 608 (1446)
+...+.|+.|.+..+ ... ..-...+...+...+.|++|+|++|.|.. +...+.....|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~--~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP--VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC--HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCC--HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 455677777755432 110 00011233334467899999999999863 44556667889999999999874
Q ss_pred ---cCcccccccccceeec--cCcccccc-----ccccccCcccceeecccCCC
Q 042296 609 ---LPDSINKLYNLHTLLL--EDCDRLKK-----LCADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 609 ---lp~~i~~L~~L~~L~L--~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~ 652 (1446)
+...+...++|++|+| ++|. ++. +...+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5677888899999999 7774 432 34445666899999999987
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.72 E-value=0.0061 Score=69.61 Aligned_cols=156 Identities=13% Similarity=0.036 Sum_probs=81.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|.+|+|||++|+.+++. ....| +.+..+ ++ .... ...............-..++
T Consensus 86 ~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~l----~~~~------~g~~~~~~~~~f~~a~~~~~ 144 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------DL----VSKW------MGESEKLVKQLFAMARENKP 144 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------HH----HSCC---------CHHHHHHHHHHHHHTSS
T ss_pred eEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------HH----hhhh------cchHHHHHHHHHHHHHHcCC
Confidence 3568999999999999999983 32221 222221 11 1111 01112222222222224578
Q ss_pred EEEEEECCCCCChh-----------hHHHhccccc---CCCCCcEEEEEccChH-----HHHhhCCCCceecCCCChHhH
Q 042296 267 FLLVLDDVWNENYN-----------DWIDLSRPFE---AGAPGSKIVVTTRNQA-----VVAIMGTVPAYPLKELSDEDC 327 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~-----------~~~~~~~~l~---~~~~gs~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~ 327 (1446)
.+|++|+++.-... ....+...+. ....+..||.||.... +.. .-...+.+...+.++-
T Consensus 145 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 222 (355)
T 2qp9_X 145 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 222 (355)
T ss_dssp EEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHH
T ss_pred eEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHH
Confidence 89999999643110 0112222211 1224566666776542 222 2224577888888988
Q ss_pred HHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCc-hhHHHHHH
Q 042296 328 LNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGL-PLAAKTLG 369 (1446)
Q Consensus 328 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 369 (1446)
.+++..++..... ... ......|++.+.|. +-.|..+.
T Consensus 223 ~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 223 TTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 8998877633221 111 33456788888884 44454443
No 197
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.014 Score=65.47 Aligned_cols=160 Identities=12% Similarity=0.074 Sum_probs=82.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|++|+|||++|+.+++. . ...-++.++... +.... .......+.......-..++
T Consensus 47 ~iLL~GppGtGKT~la~ala~~--~----~~~~~~~i~~~~------------l~~~~--~g~~~~~~~~lf~~a~~~~~ 106 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD------------LVSKW--LGESEKLVKNLFQLARENKP 106 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH--T----TSCEEEEEECCS------------SCCSS--CCSCHHHHHHHHHHHHHTSS
T ss_pred eEEEECCCCccHHHHHHHHHHH--c----CCCcEEEEEhHH------------HHhhh--hhHHHHHHHHHHHHHHhcCC
Confidence 4568999999999999999973 2 112233332210 00000 11122222222222224578
Q ss_pred EEEEEECCCCCC-------hhh----HHHhccccc---CCCCCcEEEEEccChHHH-Hhh--CCCCceecCCCChHhHHH
Q 042296 267 FLLVLDDVWNEN-------YND----WIDLSRPFE---AGAPGSKIVVTTRNQAVV-AIM--GTVPAYPLKELSDEDCLN 329 (1446)
Q Consensus 267 ~LlVlDdv~~~~-------~~~----~~~~~~~l~---~~~~gs~iivTtR~~~v~-~~~--~~~~~~~l~~L~~~~~~~ 329 (1446)
.+|++|+++.-. ... ...+...+. ....+..||.||...... ..+ .-...+.+...+.++-.+
T Consensus 107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~ 186 (322)
T 1xwi_A 107 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAA 186 (322)
T ss_dssp EEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHH
T ss_pred cEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHH
Confidence 899999996420 000 111111111 122455666677543211 111 222457888888888888
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHhCCc-hhHHHHHHh
Q 042296 330 VFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGL-PLAAKTLGG 370 (1446)
Q Consensus 330 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~~ 370 (1446)
++..+...... ... ......|++.+.|. +-.|..+..
T Consensus 187 il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 187 MFKLHLGTTQN-SLT---EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHTTCCB-CCC---HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 88877632221 111 34566788888887 444555443
No 198
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.67 E-value=0.0013 Score=68.25 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.8
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+-|+|.+|+|||++|+.+++.
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999874
No 199
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.62 E-value=0.0038 Score=72.34 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=54.5
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC-----------------hHHHHhhCCCCceecCCCChHhHH
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN-----------------QAVVAIMGTVPAYPLKELSDEDCL 328 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~ 328 (1446)
+.+|++|++..........+...+...... .++++|.. +.+...+ ..+.+.+++.++..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~ 265 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTK 265 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHH
Confidence 359999999776555555555544433223 34444421 2222222 34799999999999
Q ss_pred HHHHhhccCCCCCCCChhHHHHHHHHHHHhC-CchhHHH
Q 042296 329 NVFTQHSLGTRDFNMHKSLEEIGKKIVIKCN-GLPLAAK 366 (1446)
Q Consensus 329 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~-glPlai~ 366 (1446)
+++...+..... ... .+....|++.+. |.|-.+.
T Consensus 266 ~il~~~~~~~~~-~~~---~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 266 QILRIRCEEEDV-EMS---EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHHTTC-CBC---HHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHcCC-CCC---HHHHHHHHHHhcCCCHHHHH
Confidence 999877643221 111 345667888886 6664443
No 200
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.58 E-value=0.0011 Score=64.84 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=25.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE 225 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 225 (1446)
.+.|+|..|+|||||++.++..... ..+ .++++...+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAAS 74 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHH
Confidence 4579999999999999999973221 111 256665543
No 201
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.52 E-value=0.0071 Score=68.21 Aligned_cols=157 Identities=15% Similarity=0.060 Sum_probs=82.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-HHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELK-KQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~~l~~~ 265 (1446)
.+-++|.+|+|||++|+.+++. .... ++.++ ...+ .... ....+.....+. ..-..+
T Consensus 53 ~vLl~GppGtGKT~la~aia~~--~~~~-----~~~v~----~~~l----~~~~-------~g~~~~~~~~~f~~a~~~~ 110 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATE--ANST-----FFSVS----SSDL----VSKW-------MGESEKLVKQLFAMARENK 110 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH--HTCE-----EEEEE----HHHH----HTTT-------GGGHHHHHHHHHHHHHHTS
T ss_pred eEEEECCCCCcHHHHHHHHHHH--HCCC-----EEEEc----hHHH----hhcc-------cchHHHHHHHHHHHHHhcC
Confidence 3568999999999999999973 3322 22221 1111 1110 111222222222 222356
Q ss_pred eEEEEEECCCCCCh-----------hhHHHhccc---ccCCCCCcEEEEEccChHHHH-hh--CCCCceecCCCChHhHH
Q 042296 266 KFLLVLDDVWNENY-----------NDWIDLSRP---FEAGAPGSKIVVTTRNQAVVA-IM--GTVPAYPLKELSDEDCL 328 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~-----------~~~~~~~~~---l~~~~~gs~iivTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~ 328 (1446)
+.+|++|+++.-.. .....+... +.....+..||.||....... .+ .-...+.+...+.++-.
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~ 190 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHH
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHH
Confidence 78999999964210 001222222 212334566776776543211 10 11245778888999999
Q ss_pred HHHHhhccCCCCCCCChhHHHHHHHHHHHhCCc-hhHHHHHH
Q 042296 329 NVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGL-PLAAKTLG 369 (1446)
Q Consensus 329 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 369 (1446)
+++..++..... ... ......|++.+.|. +-.|..+.
T Consensus 191 ~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 191 TMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 999887743221 111 23456788888874 54555444
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0058 Score=67.68 Aligned_cols=128 Identities=8% Similarity=0.015 Sum_probs=79.2
Q ss_pred eeEccCCchHHHHHHHHHccc-chhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 189 KVYGMGGLGKTTLAQLVYNDA-RLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~-~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
-++|+.|+||||+|+.+++.- ..........++..+. ...+..+ +++.+.+.... ..+++
T Consensus 22 Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p-----------------~~~~~ 83 (305)
T 2gno_A 22 LINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSP-----------------ELYTR 83 (305)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCC-----------------SSSSS
T ss_pred EEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhcc-----------------ccCCc
Confidence 578999999999999998631 0111122234444332 2222222 23433332111 02456
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh-HHHHhhCCCCceecCCCChHhHHHHHHhhc
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ-AVVAIMGTVPAYPLKELSDEDCLNVFTQHS 335 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 335 (1446)
-++|+|+++.-+......+...+....+.+.+|++|.++ .+...+... .+++.+++.++..+.+.+.+
T Consensus 84 kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 84 KYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred eEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 789999998776666666766665545677777776544 344444444 89999999999999887765
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.32 E-value=0.015 Score=66.22 Aligned_cols=150 Identities=16% Similarity=0.186 Sum_probs=82.3
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH-----
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFD-LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ----- 261 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----- 261 (1446)
..++|..|+||||+|+.+++... ...+. .+.-+..+..... +.....+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~----------------------~~ir~~i~~~~~~~~ 105 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI----------------------DVVRNQIKDFASTRQ 105 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH----------------------HHHHTHHHHHHHBCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH----------------------HHHHHHHHHHHhhcc
Confidence 46899999999999999987321 11111 1111222221111 2222212111
Q ss_pred -cCCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH-HHHhh-CCCCceecCCCChHhHHHHHHhhccCC
Q 042296 262 -LSQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA-VVAIM-GTVPAYPLKELSDEDCLNVFTQHSLGT 338 (1446)
Q Consensus 262 -l~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~ 338 (1446)
+.+.+-++|+|++..-.......+...+......+++|++|.... +.... .....+.+.+++.++..+.+...+-..
T Consensus 106 ~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~ 185 (340)
T 1sxj_C 106 IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHE 185 (340)
T ss_dssp SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHc
Confidence 123467899999966544445555444443345667777775432 11111 222468899999999888887665222
Q ss_pred CCCCCChhHHHHHHHHHHHhCCchhH
Q 042296 339 RDFNMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 339 ~~~~~~~~~~~~~~~i~~~c~glPla 364 (1446)
. .... .+....|++.++|.+-.
T Consensus 186 ~-~~i~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 186 K-LKLS---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp T-CCBC---HHHHHHHHHHHTTCHHH
T ss_pred C-CCCC---HHHHHHHHHHcCCCHHH
Confidence 1 1111 34566788888887753
No 204
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.26 E-value=0.0042 Score=60.49 Aligned_cols=89 Identities=12% Similarity=0.015 Sum_probs=51.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-|+|..|+|||++|+.+++... +..-. .+ +..+...+. ..... .+... +.-
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~-------------------~~~~~---~~~~a---~~g 78 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA-------------------PQLND---FIALA---QGG 78 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS-------------------SCHHH---HHHHH---TTS
T ss_pred EEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc-------------------hhhhc---HHHHc---CCc
Confidence 46999999999999999987421 11112 22 555433221 11111 11111 224
Q ss_pred EEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccC
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRN 304 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~ 304 (1446)
.|++|+++.-.......+...+.......+||.||..
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 6899999876655555555555444455678887764
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.19 E-value=0.025 Score=66.67 Aligned_cols=159 Identities=13% Similarity=0.076 Sum_probs=82.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|++|+|||++|+.+++. . ...-++.++... +. ....+. .......+....+ ..++
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~----l~----~~~~g~---~~~~~~~~f~~a~---~~~~ 228 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD----LV----SKWLGE---SEKLVKNLFQLAR---ENKP 228 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC--------------------CCCTHHHHHHHHH---HSCS
T ss_pred eEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----HH----hhhcch---HHHHHHHHHHHHH---HcCC
Confidence 4568999999999999999973 2 122344443321 11 111111 1122232222222 3567
Q ss_pred EEEEEECCCCCCh-----------hhHHHhcccccC---CCCCcEEEEEccChHHH-Hh-hC-CCCceecCCCChHhHHH
Q 042296 267 FLLVLDDVWNENY-----------NDWIDLSRPFEA---GAPGSKIVVTTRNQAVV-AI-MG-TVPAYPLKELSDEDCLN 329 (1446)
Q Consensus 267 ~LlVlDdv~~~~~-----------~~~~~~~~~l~~---~~~gs~iivTtR~~~v~-~~-~~-~~~~~~l~~L~~~~~~~ 329 (1446)
.+|++|+++.-.. .....+...+.. ...+..||.||...... .. .. ....+.+...+.++..+
T Consensus 229 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~ 308 (444)
T 2zan_A 229 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAA 308 (444)
T ss_dssp EEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred eEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHH
Confidence 8999999964310 011222222221 23456777777654321 11 11 12357788888888888
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHhCCc-hhHHHHHH
Q 042296 330 VFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGL-PLAAKTLG 369 (1446)
Q Consensus 330 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 369 (1446)
+|..++..... ... ......|++.+.|. +-.|..+.
T Consensus 309 il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 309 MFRLHLGSTQN-SLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHTTSCE-ECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 88877632221 111 24456788888885 44554443
No 206
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.06 E-value=0.013 Score=66.26 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=77.3
Q ss_pred eeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceEE
Q 042296 189 KVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKFL 268 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~L 268 (1446)
-++|.+|+||||+|+.+++. ... ..+.++.+.. ... ..++.+....... ...+++-+
T Consensus 52 L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~~-~~~-~i~~~~~~~~~~~----------------~~~~~~~v 108 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSDC-KID-FVRGPLTNFASAA----------------SFDGRQKV 108 (324)
T ss_dssp EECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTTC-CHH-HHHTHHHHHHHBC----------------CCSSCEEE
T ss_pred EeeCcCCCCHHHHHHHHHHH--hCC---CEEEEccccc-CHH-HHHHHHHHHHhhc----------------ccCCCCeE
Confidence 45677999999999999873 221 2334443332 222 1222121111000 01247889
Q ss_pred EEEECCCCCC-hhhHHHhcccccCCCCCcEEEEEccChH-----HHHhhCCCCceecCCCChHhHHHH-------HHhhc
Q 042296 269 LVLDDVWNEN-YNDWIDLSRPFEAGAPGSKIVVTTRNQA-----VVAIMGTVPAYPLKELSDEDCLNV-------FTQHS 335 (1446)
Q Consensus 269 lVlDdv~~~~-~~~~~~~~~~l~~~~~gs~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~l-------f~~~a 335 (1446)
||+||++.-. ......+...+.....+.++|+||.... +...+ ..+.+++++.++-.++ +...+
T Consensus 109 liiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~l~~~~ 185 (324)
T 3u61_B 109 IVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKIEMMKQMIRRLTEIC 185 (324)
T ss_dssp EEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999997654 3344444444433334678888887543 22222 3688999998874333 22222
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhCCchhH
Q 042296 336 LGTRDFNMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~i~~~c~glPla 364 (1446)
...+ ....+ .+....|++.++|.+-.
T Consensus 186 ~~~~-~~~~~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 186 KHEG-IAIAD--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHT-CCBSC--HHHHHHHHHHTCSCTTH
T ss_pred HHcC-CCCCc--HHHHHHHHHhCCCCHHH
Confidence 1111 11111 24566678888776653
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.95 E-value=0.044 Score=60.94 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=78.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|.+|+|||++|+.+++. ... -++.+. ...+.. ...+... ..+...+.......+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~----~~~l~~----~~~g~~~------~~~~~~f~~a~~~~p 109 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----GPELLT----MWFGESE------ANVREIFDKARQAAP 109 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----HHHHHH----HHHTTCT------THHHHHHHHHHHTCS
T ss_pred eEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----hHHHHh----hhcCchH------HHHHHHHHHHHhcCC
Confidence 3579999999999999999973 222 223332 223322 2211111 112222333334567
Q ss_pred EEEEEECCCCCCh--------------hhHHHhcccccC--CCCCcEEEEEccChHHH-Hh-hC---CCCceecCCCChH
Q 042296 267 FLLVLDDVWNENY--------------NDWIDLSRPFEA--GAPGSKIVVTTRNQAVV-AI-MG---TVPAYPLKELSDE 325 (1446)
Q Consensus 267 ~LlVlDdv~~~~~--------------~~~~~~~~~l~~--~~~gs~iivTtR~~~v~-~~-~~---~~~~~~l~~L~~~ 325 (1446)
.+|++|+++.-.. .....+...+.. ...+..||.||...+.. .. .. -...+.+...+.+
T Consensus 110 ~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~ 189 (301)
T 3cf0_A 110 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 189 (301)
T ss_dssp EEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHH
T ss_pred eEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHH
Confidence 8999999953100 011222222211 12456778888765322 11 12 1235788888888
Q ss_pred hHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhH
Q 042296 326 DCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLA 364 (1446)
Q Consensus 326 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPla 364 (1446)
+-.+++........ ......+. .+++.+.|.|-+
T Consensus 190 ~r~~il~~~l~~~~-~~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 190 SRVAILKANLRKSP-VAKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp HHHHHHHHHHTTSC-BCSSCCHH----HHHHTCSSCCHH
T ss_pred HHHHHHHHHHccCC-CCccchHH----HHHHHcCCCCHH
Confidence 88888877653222 11122222 355566666543
No 208
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.93 E-value=0.058 Score=59.95 Aligned_cols=155 Identities=12% Similarity=0.042 Sum_probs=79.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH-HHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVEL-KKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l-~~~l~~~ 265 (1446)
.+-++|.+|+||||+|+.+++. .... .+.+..+.-. .. ...........+ ......+
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~--------------~~---~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLT--------------SK---YVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTS--------------SS---SCSCHHHHHHHHHHHHHHTC
T ss_pred eEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHh--------------hc---ccchHHHHHHHHHHHHHHcC
Confidence 4578999999999999999873 2221 1223332211 00 111222222222 2222356
Q ss_pred eEEEEEECCCCCCh-----------hhHHHhc---ccccCC--CCCcEEEEEccChH-----HHHhhCCCCceecCCCCh
Q 042296 266 KFLLVLDDVWNENY-----------NDWIDLS---RPFEAG--APGSKIVVTTRNQA-----VVAIMGTVPAYPLKELSD 324 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~-----------~~~~~~~---~~l~~~--~~gs~iivTtR~~~-----v~~~~~~~~~~~l~~L~~ 324 (1446)
+.+|++|++..-.. .....+. ..++.. +.+..||.||...+ +...+ ...+.+...+.
T Consensus 114 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~ 191 (297)
T 3b9p_A 114 PSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF--TKRVYVSLPDE 191 (297)
T ss_dssp SEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCH
T ss_pred CcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCH
Confidence 78999999954210 0011111 111111 13456777776542 22222 23567777778
Q ss_pred HhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchh-HHHHHH
Q 042296 325 EDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPL-AAKTLG 369 (1446)
Q Consensus 325 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 369 (1446)
++..+++...+..... ... .+....+++.+.|.+- ++..+.
T Consensus 192 ~~r~~il~~~~~~~~~-~~~---~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 192 QTRELLLNRLLQKQGS-PLD---TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHHHHHHGGGSC-CSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 8878887766532211 111 3455678888888875 554443
No 209
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.93 E-value=0.025 Score=64.60 Aligned_cols=158 Identities=11% Similarity=0.006 Sum_probs=81.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH-HcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKK-QLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~~ 265 (1446)
.+-|+|.+|+|||++|+.+++. .... .+.+..+.-.+ . ...........+.. .-..+
T Consensus 119 ~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--------------~---~~g~~~~~~~~~~~~a~~~~ 176 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--------------K---WVGEGEKMVRALFAVARCQQ 176 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC--------------S---STTHHHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc--------------c---ccchHHHHHHHHHHHHHhcC
Confidence 4568999999999999999873 2221 23344332111 0 00111112222222 22356
Q ss_pred eEEEEEECCCCCC-----------hhhHHHhcccccC----CCCCcEEEEEccChH-HHHhh-C-CCCceecCCCChHhH
Q 042296 266 KFLLVLDDVWNEN-----------YNDWIDLSRPFEA----GAPGSKIVVTTRNQA-VVAIM-G-TVPAYPLKELSDEDC 327 (1446)
Q Consensus 266 ~~LlVlDdv~~~~-----------~~~~~~~~~~l~~----~~~gs~iivTtR~~~-v~~~~-~-~~~~~~l~~L~~~~~ 327 (1446)
+.+|+||+++.-. ...+..+...+.. ...+..||.||.... +...+ . ....+.+...+.++.
T Consensus 177 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 177 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASAR 256 (357)
T ss_dssp SEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHH
T ss_pred CeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHH
Confidence 7899999983210 0111222222221 123455666775432 11111 1 123577888888888
Q ss_pred HHHHHhhccCCCCCCCChhHHHHHHHHHHHhCC-chhHHHHHHh
Q 042296 328 LNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNG-LPLAAKTLGG 370 (1446)
Q Consensus 328 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 370 (1446)
.+++...+..... ... .+....|++.+.| .+-+|..+..
T Consensus 257 ~~il~~~~~~~~~-~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 257 KQIVINLMSKEQC-CLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhcCC-Ccc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8888776632211 111 3456678888888 4556655543
No 210
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.75 E-value=0.01 Score=56.07 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=43.8
Q ss_pred EEEeCCCCcc--ccCccccCCCCCceeeccCccccccCc-ccccccccceeeccCcc
Q 042296 575 VFSLCGYQIS--ELPNSVGDLRYLRYLNLSRTCIEILPD-SINKLYNLHTLLLEDCD 628 (1446)
Q Consensus 575 ~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 628 (1446)
+++.+++.++ .+|..+. .+|++|+|++|+|+.||. .|..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 6888999988 8887664 579999999999999976 46788999999999874
No 211
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.74 E-value=0.023 Score=59.90 Aligned_cols=83 Identities=24% Similarity=0.203 Sum_probs=50.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcC-----------CCCCCCCCHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGT-----------DQNVDSLDFDKLQ 255 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-----------~~~~~~~~~~~~~ 255 (1446)
.+.|+|.+|+||||+|..++. . .-..++|++....++..++.. +....+. .......+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 457999999999999999986 1 224678888776556655443 3333221 1111112223344
Q ss_pred HHHHHHcCCceEEEEEECCC
Q 042296 256 VELKKQLSQKKFLLVLDDVW 275 (1446)
Q Consensus 256 ~~l~~~l~~~~~LlVlDdv~ 275 (1446)
..++..++.+.-+||+|.+-
T Consensus 96 ~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHhhcCCCEEEEcCcH
Confidence 55555554457789999874
No 212
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.72 E-value=0.0046 Score=67.30 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=44.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCV--SEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
+.|+|++|+||||||.+++.. .-..++|+++ .+..+. ...+.++....+.+.+.+.
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l~~~ 183 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAMLQH 183 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHHhhC
Confidence 468999999999999999873 1224667777 333111 0134566666666666655
Q ss_pred eEEEEEECCCC
Q 042296 266 KFLLVLDDVWN 276 (1446)
Q Consensus 266 ~~LlVlDdv~~ 276 (1446)
+ +||+|++..
T Consensus 184 ~-LLVIDsI~a 193 (331)
T 2vhj_A 184 R-VIVIDSLKN 193 (331)
T ss_dssp S-EEEEECCTT
T ss_pred C-EEEEecccc
Confidence 6 999999943
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.036 Score=62.73 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=78.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH-HHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVEL-KKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l-~~~l~~~ 265 (1446)
.+-+||++|.|||.+|+++++ +....| +.|..++-.+ . -..+.+.....+ ...-+..
T Consensus 184 GvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s--------------k---~vGese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ--------------K---YIGEGSRMVRELFVMAREHA 241 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--------------S---STTHHHHHHHHHHHHHHHTC
T ss_pred ceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--------------c---ccchHHHHHHHHHHHHHHhC
Confidence 456899999999999999998 333333 2333332110 0 001112222222 2222457
Q ss_pred eEEEEEECCCCCC--------hh--h----HHHhcccccC--CCCCcEEEEEccChHHHH-h-h---CCCCceecCCCCh
Q 042296 266 KFLLVLDDVWNEN--------YN--D----WIDLSRPFEA--GAPGSKIVVTTRNQAVVA-I-M---GTVPAYPLKELSD 324 (1446)
Q Consensus 266 ~~LlVlDdv~~~~--------~~--~----~~~~~~~l~~--~~~gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~ 324 (1446)
+++|.+|+++.-- .. . ...+...+.. ...+..||.||..++... . . .-...+.+..-+.
T Consensus 242 P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~ 321 (405)
T 4b4t_J 242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSV 321 (405)
T ss_dssp SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCH
T ss_pred CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCH
Confidence 8999999996420 00 0 1122222221 234556777886544321 1 1 2235688888888
Q ss_pred HhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 325 EDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 325 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
++-.++|..+.-... ....-++ .++++.+.|.-
T Consensus 322 ~~R~~Il~~~~~~~~-l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 322 AARAEILRIHSRKMN-LTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp HHHHHHHHHHHTTSB-CCSSCCH----HHHHHHCCSCC
T ss_pred HHHHHHHHHHhcCCC-CCccCCH----HHHHHHCCCCC
Confidence 888888887653221 1122233 44777787754
No 214
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.59 E-value=0.0072 Score=58.57 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=47.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-|+|..|+|||++|+.+++... -|+.+.-. +.. .+. ...+.+.. +.-
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~~~---~~~------------------~~~~~~~a--~~~ 77 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-EYL---IDM------------------PMELLQKA--EGG 77 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-THH---HHC------------------HHHHHHHT--TTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC--------CeEEechh-hCC---hHh------------------hhhHHHhC--CCC
Confidence 46899999999999999987321 23333211 110 000 11111111 234
Q ss_pred EEEEECCCCCChhhHHHhcccccCC-CCCcEEEEEccC
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAG-APGSKIVVTTRN 304 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~-~~gs~iivTtR~ 304 (1446)
.|++|++..........+...+... ..+.+||.||..
T Consensus 78 ~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 78 VLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred eEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 7899999876554444444444332 245788888753
No 215
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.12 E-value=0.16 Score=58.85 Aligned_cols=158 Identities=11% Similarity=0.036 Sum_probs=78.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-|+|.+|+|||++|+.+++. .... .+.+..+.-.+ . . .......+...+...-..+.
T Consensus 150 ~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~--~--------~------~g~~~~~~~~~~~~a~~~~~ 208 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS--K--------Y------VGEGEKLVRALFAVARELQP 208 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----------------------CHHHHHHHHHHHHHSSS
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc--c--------c------cchHHHHHHHHHHHHHhcCC
Confidence 4568999999999999999873 2221 12222222111 0 0 00111112222222223456
Q ss_pred EEEEEECCCCCC-----------hhhHHHhccccc---C-CCCCcEEEEEccChHHH-Hhh-CCC-CceecCCCChHhHH
Q 042296 267 FLLVLDDVWNEN-----------YNDWIDLSRPFE---A-GAPGSKIVVTTRNQAVV-AIM-GTV-PAYPLKELSDEDCL 328 (1446)
Q Consensus 267 ~LlVlDdv~~~~-----------~~~~~~~~~~l~---~-~~~gs~iivTtR~~~v~-~~~-~~~-~~~~l~~L~~~~~~ 328 (1446)
.+|+||+++.-. ......+...+. . ......||.||...... ..+ ... ..+.+...+.++..
T Consensus 209 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~ 288 (389)
T 3vfd_A 209 SIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRL 288 (389)
T ss_dssp EEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHH
T ss_pred eEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHH
Confidence 799999995320 001111211111 1 12344566666543211 111 112 35788888999999
Q ss_pred HHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchh-HHHHHH
Q 042296 329 NVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPL-AAKTLG 369 (1446)
Q Consensus 329 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 369 (1446)
+++...+..... ... .+....|++.+.|..- +|..+.
T Consensus 289 ~il~~~~~~~~~-~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 289 LLLKNLLCKQGS-PLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHHTTSCC-CSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 998877633221 111 3456678888888654 554443
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.05 E-value=0.0071 Score=67.30 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=25.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchh-ccCCceEEEEe
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ-DHFDLKAWTCV 223 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~v 223 (1446)
.+-++|..|+|||+||+.+++. .. ..-..+.++.+
T Consensus 154 ~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 4568999999999999999984 33 23234555654
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.00 E-value=0.055 Score=60.67 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=54.5
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLD-FDKLQVELKKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~ 265 (1446)
.+.++|.+|+||||+|+.+++. ....-...+.+..+...+.. ....+ ++......... ...+...+.. ..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~l---~g~~~~~~~~~~~~~~~~~~~~---~~ 119 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSRL---IGAPPGYVGYEEGGQLTEAVRR---RP 119 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHHH---HCCCTTSTTTTTCCHHHHHHHH---CS
T ss_pred EEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHHh---cCCCCccccccccchHHHHHHh---CC
Confidence 4579999999999999999873 22111223445554332221 11111 22211100111 0122222222 33
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCC-----------CCcEEEEEccC
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGA-----------PGSKIVVTTRN 304 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTtR~ 304 (1446)
.-++++|++..........+...+..+. .++.||.||..
T Consensus 120 ~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 120 YSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred CeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 4699999997765555555544332211 24447777765
No 218
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.99 E-value=0.009 Score=60.02 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=62.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC---CCHHHHHHHHH---HHhcCCCCCCCC-------CHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED---FDITRITKSIL---NSIGTDQNVDSL-------DFDK 253 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~---~~l~~~~~~~~~-------~~~~ 253 (1446)
.+-|++..|.||||.|-...- +.-.+=..+.++..-+. .+...++..+- .+.+....-... ....
T Consensus 30 ~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 456888888999999987775 33333334555654432 22333333320 000000000111 1122
Q ss_pred HHHHHHHHcCCceE-EEEEECCCCC---ChhhHHHhcccccCCCCCcEEEEEccCh
Q 042296 254 LQVELKKQLSQKKF-LLVLDDVWNE---NYNDWIDLSRPFEAGAPGSKIVVTTRNQ 305 (1446)
Q Consensus 254 ~~~~l~~~l~~~~~-LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~ 305 (1446)
.....++.+.+.+| |||||++-.. ...+.+++...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 33445666655544 9999998321 2233445555555555678999999985
No 219
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.98 E-value=0.053 Score=58.74 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=54.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhcc--CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHH-HHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDH--FDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKL-QVELKK 260 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-~~~l~~ 260 (1446)
+.|+|.+|+||||||.+++.. .... =..++||+....++.. .+++++.+... .+.+.++. ...+..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 479999999999999888763 3333 2468899988888764 36777755321 23455555 333333
Q ss_pred H--c-CCceEEEEEECCCC
Q 042296 261 Q--L-SQKKFLLVLDDVWN 276 (1446)
Q Consensus 261 ~--l-~~~~~LlVlDdv~~ 276 (1446)
. + +++.-+||+|-|-.
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 3 45788999999843
No 220
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.044 Score=63.10 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+-+||++|+|||++|+++++
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998
No 221
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.82 E-value=0.049 Score=61.13 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=54.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN----VDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|.+|+||||||.+++.. ....=..++|++....++.. .+++++.... ....+.++....++..+
T Consensus 63 i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 4578999999999999999873 22222357888887777654 4555554321 13345666666666555
Q ss_pred C-CceEEEEEECCCC
Q 042296 263 S-QKKFLLVLDDVWN 276 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~~ 276 (1446)
+ .+.-++|+|.+-.
T Consensus 136 ~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAA 150 (356)
T ss_dssp HTSCCSEEEEECTTT
T ss_pred hhcCCCeEEehHhhh
Confidence 3 4566899999843
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.73 E-value=0.17 Score=54.65 Aligned_cols=127 Identities=12% Similarity=0.114 Sum_probs=64.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+.|+|.+|+||||+|+.+++. ....| +.+..+.-.+ .. ...........+.........
T Consensus 48 vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--------------~~--~~~~~~~~~~~~~~a~~~~~~ 106 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--------------MF--VGVGASRVRDMFEQAKKAAPC 106 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT--------------SC--CCCCHHHHHHHHHHHHTTCSE
T ss_pred EEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH--------------Hh--hhhhHHHHHHHHHHHHHcCCe
Confidence 579999999999999999873 22222 2232221100 00 111223333334444455678
Q ss_pred EEEEECCCCCC----------h----hhHHHhcccccC--CCCCcEEEEEccChHHH-Hhh-C---CCCceecCCCChHh
Q 042296 268 LLVLDDVWNEN----------Y----NDWIDLSRPFEA--GAPGSKIVVTTRNQAVV-AIM-G---TVPAYPLKELSDED 326 (1446)
Q Consensus 268 LlVlDdv~~~~----------~----~~~~~~~~~l~~--~~~gs~iivTtR~~~v~-~~~-~---~~~~~~l~~L~~~~ 326 (1446)
++++|+++.-. . .....+...+.. ...+..||.||...+.. ... . -...+.+...+.++
T Consensus 107 il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~ 186 (257)
T 1lv7_A 107 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186 (257)
T ss_dssp EEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred eehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHH
Confidence 99999983210 0 011112111111 12455677777655321 111 1 12356777777777
Q ss_pred HHHHHHhhc
Q 042296 327 CLNVFTQHS 335 (1446)
Q Consensus 327 ~~~lf~~~a 335 (1446)
-.+++..+.
T Consensus 187 r~~il~~~~ 195 (257)
T 1lv7_A 187 REQILKVHM 195 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 223
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.70 E-value=0.067 Score=58.26 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.8
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+-|+|..|+|||++|+.+++.
T Consensus 32 vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHh
Confidence 468999999999999999874
No 224
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.63 E-value=0.073 Score=60.24 Aligned_cols=82 Identities=20% Similarity=0.180 Sum_probs=55.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN----VDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|.+|+||||+|.+++... ...=..++|++....++.. .+.+++.... ....+.+++...++...
T Consensus 76 li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 45789999999999999888632 2223468999998877654 2445544321 12345667767776666
Q ss_pred C-CceEEEEEECCC
Q 042296 263 S-QKKFLLVLDDVW 275 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~ 275 (1446)
+ .+.-+||+|.+-
T Consensus 149 ~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 149 RSGAIDVVVVDSVA 162 (366)
T ss_dssp TTTCCSEEEEECTT
T ss_pred hcCCCCEEEEeChH
Confidence 4 345699999984
No 225
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.099 Score=60.03 Aligned_cols=150 Identities=18% Similarity=0.160 Sum_probs=76.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|++|.|||++|+++++ +....| +.|..+.- .... .......+.......-...+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L--------------~sk~--vGesek~ir~lF~~Ar~~aP 303 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSEL--------------VQKY--VGEGARMVRELFEMARTKKA 303 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG--------------CCCS--SSHHHHHHHHHHHHHHHTCS
T ss_pred ceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHh--------------hccc--CCHHHHHHHHHHHHHHhcCC
Confidence 345789999999999999998 333332 23333211 1000 11111122222222224578
Q ss_pred EEEEEECCCCCC--------h--h----hHHHhcccccC--CCCCcEEEEEccChHHHH-hh---C-CCCceecCCCChH
Q 042296 267 FLLVLDDVWNEN--------Y--N----DWIDLSRPFEA--GAPGSKIVVTTRNQAVVA-IM---G-TVPAYPLKELSDE 325 (1446)
Q Consensus 267 ~LlVlDdv~~~~--------~--~----~~~~~~~~l~~--~~~gs~iivTtR~~~v~~-~~---~-~~~~~~l~~L~~~ 325 (1446)
++|++|+++.-- . . ....+...+.. ...+..||.||...+... .+ | -...+.+...+.+
T Consensus 304 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 304 CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHH
T ss_pred ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHH
Confidence 999999986420 0 0 01111111111 223456677886543221 11 2 2346788888888
Q ss_pred hHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 326 DCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 326 ~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
+-.++|..+.-... ....-++ ..|++.+.|.-
T Consensus 384 ~R~~Ilk~~l~~~~-l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 384 GRANIFRIHSKSMS-VERGIRW----ELISRLCPNST 415 (467)
T ss_dssp HHHHHHHHHHTTSC-BCSSCCH----HHHHHHCCSCC
T ss_pred HHHHHHHHHhcCCC-CCCCCCH----HHHHHHCCCCC
Confidence 88888887763221 1122223 34677787754
No 226
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.61 E-value=0.011 Score=60.66 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.6
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+-|+|.+|+||||+|+.+++.
T Consensus 46 vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999873
No 227
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.46 E-value=0.013 Score=64.24 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.9
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+-++|.+|+|||++|+.+++.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999973
No 228
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.38 E-value=0.3 Score=55.03 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=33.6
Q ss_pred ceecCCCChHhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCchhHHH
Q 042296 316 AYPLKELSDEDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLPLAAK 366 (1446)
Q Consensus 316 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 366 (1446)
.+.+++.+.++-.+++.+.+..... .. -.+.+..|++.++|.|-.+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~-~~---~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDV-EI---EDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHTSTTCHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHhcCCChHHHH
Confidence 4789999999999999887632211 11 14567889999999996543
No 229
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.35 E-value=0.08 Score=62.72 Aligned_cols=155 Identities=12% Similarity=0.139 Sum_probs=79.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-|+|.+|+|||++|+.+++. .... ++.+. .. ++...+ ...........+.....+++.
T Consensus 241 vLL~GppGtGKT~lAraia~~--~~~~-----fv~vn----~~----~l~~~~------~g~~~~~~~~~f~~A~~~~p~ 299 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANE--TGAF-----FFLIN----GP----EIMSKL------AGESESNLRKAFEEAEKNAPA 299 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHH--CSSE-----EEEEE----HH----HHHTSC------TTHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECcCCCCHHHHHHHHHHH--hCCC-----EEEEE----ch----Hhhhhh------cchhHHHHHHHHHHHHhcCCc
Confidence 568999999999999999873 2222 22222 11 111111 111122233333444456778
Q ss_pred EEEEECCCCC--------C---hhhHHHhcccccC--CCCCcEEEEEccChHH-HHhh-C---CCCceecCCCChHhHHH
Q 042296 268 LLVLDDVWNE--------N---YNDWIDLSRPFEA--GAPGSKIVVTTRNQAV-VAIM-G---TVPAYPLKELSDEDCLN 329 (1446)
Q Consensus 268 LlVlDdv~~~--------~---~~~~~~~~~~l~~--~~~gs~iivTtR~~~v-~~~~-~---~~~~~~l~~L~~~~~~~ 329 (1446)
+|+||+++.- . ......+...+.. ...+..||.||...+. ...+ . ....+.+...+.++-.+
T Consensus 300 iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~ 379 (489)
T 3hu3_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (489)
T ss_dssp EEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred EEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHH
Confidence 9999998311 0 0111222222221 2235566667765532 1121 1 12358889999999999
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHhCCc-hhHHHHH
Q 042296 330 VFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGL-PLAAKTL 368 (1446)
Q Consensus 330 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 368 (1446)
++..++.... ......+ .++++.+.|. +-++..+
T Consensus 380 IL~~~~~~~~-l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 380 ILQIHTKNMK-LADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHTTTSC-BCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHhcCC-CcchhhH----HHHHHHccCCcHHHHHHH
Confidence 9988763222 1122223 3466666664 4444433
No 230
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.20 E-value=0.11 Score=61.04 Aligned_cols=149 Identities=11% Similarity=0.120 Sum_probs=78.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|++|+||||+|+.+++. ....| +.++.++-.+. . ...........+.+.....+.
T Consensus 52 vLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~----------~------~g~~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL----------F------VGVGAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC----------C------TTHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH----------H------hcccHHHHHHHHHHHHhcCCC
Confidence 569999999999999999973 22222 23333221110 0 001112222333444456789
Q ss_pred EEEEECCCCCCh--------------hhHHHhcccccC--CCCCcEEEEEccChHHHH-h-hCC---CCceecCCCChHh
Q 042296 268 LLVLDDVWNENY--------------NDWIDLSRPFEA--GAPGSKIVVTTRNQAVVA-I-MGT---VPAYPLKELSDED 326 (1446)
Q Consensus 268 LlVlDdv~~~~~--------------~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~-~-~~~---~~~~~l~~L~~~~ 326 (1446)
+|++|+++.-.. .....+...+.. ...+..||.||...+... . ... ...+.+...+.++
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~ 190 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHH
Confidence 999999954210 012222222211 124567777887665332 1 111 1267788888777
Q ss_pred HHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 327 CLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 327 ~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
-.+++..++.... ...... ...|++.+.|..
T Consensus 191 R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 191 RKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 7778776653221 111112 233777788876
No 231
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.12 Score=59.70 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=78.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-HHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELK-KQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~~l~~~ 265 (1446)
.+-+||++|.|||++|+++++ .....| +.+..+.-.+ . -....+.....+. ..-...
T Consensus 217 GvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s--------------k---~~Gese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD--------------K---YIGESARIIREMFAYAKEHE 274 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--------------S---SSSHHHHHHHHHHHHHHHSC
T ss_pred eEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--------------c---cchHHHHHHHHHHHHHHhcC
Confidence 456899999999999999998 333332 2333332110 0 0111122222222 222457
Q ss_pred eEEEEEECCCCCC----------hh----hHHHhccccc--CCCCCcEEEEEccChHHHHh-h-CC---CCceecCCCCh
Q 042296 266 KFLLVLDDVWNEN----------YN----DWIDLSRPFE--AGAPGSKIVVTTRNQAVVAI-M-GT---VPAYPLKELSD 324 (1446)
Q Consensus 266 ~~LlVlDdv~~~~----------~~----~~~~~~~~l~--~~~~gs~iivTtR~~~v~~~-~-~~---~~~~~l~~L~~ 324 (1446)
+++|++|+++.-- .. ....+...+. ....+..||.||..++.... + .. ...+.+..-+.
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNE 354 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCH
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCH
Confidence 8999999996420 00 1112222221 12245678888876543321 1 11 23577777778
Q ss_pred HhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 325 EDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 325 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
++-.++|..+.-.... ...-++ ..+++.+.|.-
T Consensus 355 ~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 355 AGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp HHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred HHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 8878888766533221 112223 34677777754
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.12 E-value=0.12 Score=57.31 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.6
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+-|+|.+|+|||++|+.+++.
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHHh
Confidence 468999999999999999873
No 233
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.07 E-value=0.02 Score=59.64 Aligned_cols=112 Identities=12% Similarity=-0.045 Sum_probs=62.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV-DSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~ 265 (1446)
...++|..|+||||+|..+.+ +...+-..++.+.-.... + ....++.+++..... ......++...+++.+.+.
T Consensus 14 i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred EEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence 346789999999999988877 343333344444433321 1 122344444432211 1123345556666555544
Q ss_pred eE-EEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH
Q 042296 266 KF-LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA 306 (1446)
Q Consensus 266 ~~-LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 306 (1446)
++ +||+|.+..-..+..+.+ ..+.+ .|-.||+|-+..+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred CCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 44 999999865332333333 23333 3788999998653
No 234
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.077 Score=60.25 Aligned_cols=149 Identities=16% Similarity=0.146 Sum_probs=76.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH-HcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKK-QLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~~ 265 (1446)
.+-+||++|.|||.+|+++++ +....| +.+..++- ... ...+.+.....+.. .-+..
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l--------------~sk---~vGesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSEL--------------IQK---YLGDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGG--------------CCS---SSSHHHHHHHHHHHHHHHTC
T ss_pred CCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHh--------------hhc---cCchHHHHHHHHHHHHHhcC
Confidence 456899999999999999998 333332 22332211 100 11112222222222 22356
Q ss_pred eEEEEEECCCCCC----------hh----hHHHhccccc--CCCCCcEEEEEccChHHHHh-h-CC---CCceecCCCCh
Q 042296 266 KFLLVLDDVWNEN----------YN----DWIDLSRPFE--AGAPGSKIVVTTRNQAVVAI-M-GT---VPAYPLKELSD 324 (1446)
Q Consensus 266 ~~LlVlDdv~~~~----------~~----~~~~~~~~l~--~~~~gs~iivTtR~~~v~~~-~-~~---~~~~~l~~L~~ 324 (1446)
+++|++|+++.-- .. ....+...+. ....+..||.||...+.... + .. ...+.+..-+.
T Consensus 276 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 276 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355 (437)
T ss_dssp SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCH
T ss_pred CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCH
Confidence 8999999986320 00 1111221111 12245567778876553322 1 11 13467777777
Q ss_pred HhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 325 EDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 325 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
++-.++|..+.-... ....-++ ..|++.+.|.-
T Consensus 356 ~~R~~Il~~~l~~~~-l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 356 STKKKILGIHTSKMN-LSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp HHHHHHHHHHHTTSC-BCSCCCH----HHHHHHCCSCC
T ss_pred HHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCCC
Confidence 777888877663221 1222233 34667777654
No 235
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.85 E-value=0.12 Score=58.22 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=54.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|.+|+||||||.+++.. ....=..++|++....++.. .+++++..... ...+.++....++...
T Consensus 63 iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 4579999999999999998863 22222468899988777653 24455533210 2335666666666555
Q ss_pred C-CceEEEEEECCCC
Q 042296 263 S-QKKFLLVLDDVWN 276 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~~ 276 (1446)
+ .+.-+||+|.+-.
T Consensus 136 ~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 136 RSGALDIIVIDSVAA 150 (349)
T ss_dssp TTTCCSEEEEECGGG
T ss_pred hcCCCCEEEEcChHh
Confidence 4 4566999999843
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.82 E-value=0.11 Score=66.30 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=64.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|.+|+|||++|+.+++. ....-...+.++++.-.+. .. .....+...++. ...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~--------------~~---~~~~~l~~~~~~---~~~ 580 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK--------------HS---TSGGQLTEKVRR---KPY 580 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS--------------CC---CC---CHHHHHH---CSS
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc--------------cc---cccchhhHHHHh---CCC
Confidence 3568999999999999999873 2111223344444422110 00 001111222222 233
Q ss_pred EEEEEECCCCCChhhHHHhcccccCC-----------CCCcEEEEEccCh-----HH----HHhh-----CC-CCceecC
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAG-----------APGSKIVVTTRNQ-----AV----VAIM-----GT-VPAYPLK 320 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivTtR~~-----~v----~~~~-----~~-~~~~~l~ 320 (1446)
-+|+||++..........+...+..+ ....+||+||... .+ ...+ .- ...+.+.
T Consensus 581 ~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~ 660 (758)
T 3pxi_A 581 SVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH 660 (758)
T ss_dssp SEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC
T ss_pred eEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC
Confidence 48999999877655555544443321 1356888888731 11 1111 11 1356677
Q ss_pred CCChHhHHHHHHhh
Q 042296 321 ELSDEDCLNVFTQH 334 (1446)
Q Consensus 321 ~L~~~~~~~lf~~~ 334 (1446)
+++.++-.+++...
T Consensus 661 ~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 661 SLEKKHLTEIVSLM 674 (758)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 77776666665543
No 237
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.78 E-value=0.11 Score=58.06 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+-++|.+|+|||++|+.+++
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999987
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.69 E-value=0.1 Score=59.02 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=38.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc----cCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD----HFDLKAWTCVSEDFDITRITKSILNSIGT 242 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 242 (1446)
.+.|+|.+|+||||+|..++....... .-..++|++....++..++.. ++..++.
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 457899999999999999886321111 224688999888877766543 4455543
No 239
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.66 E-value=0.12 Score=58.42 Aligned_cols=82 Identities=21% Similarity=0.137 Sum_probs=52.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|.+|+||||||.+++... ...=..++|++....++... +.+++..... ...+.+++...++...
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 45789999999999999988632 22224689999988777542 4455433210 2234555555554443
Q ss_pred C-CceEEEEEECCC
Q 042296 263 S-QKKFLLVLDDVW 275 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~ 275 (1446)
+ .+.-+||+|.+-
T Consensus 138 ~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 138 RSGAVDVIVVDSVA 151 (356)
T ss_dssp HHTCCSEEEEECGG
T ss_pred hccCCCEEEEcCHH
Confidence 2 445699999973
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.50 E-value=0.1 Score=58.52 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=38.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhcc----CCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDH----FDLKAWTCVSEDFDITRITKSILNSIGT 242 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 242 (1446)
.+.|+|.+|+||||+|.+++........ -..++|++....++..++.. +++.++.
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~ 167 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGL 167 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCC
Confidence 4579999999999999998863211110 24689999888877776653 4555543
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.46 E-value=0.11 Score=55.51 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=50.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc----cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCCCCHHH-
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD----HFDLKAWTCVSEDFDITRITKSILNSIGTDQN--------VDSLDFDK- 253 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~- 253 (1446)
.+.|+|.+|+||||||..++....... .-..++|+.....++..++. +++++++.... ....+..+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDHQ 104 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHHH
Confidence 457999999999999999886311111 12568888877765554443 34444443210 01122222
Q ss_pred --HHHHHHHHcC-CceEEEEEECCC
Q 042296 254 --LQVELKKQLS-QKKFLLVLDDVW 275 (1446)
Q Consensus 254 --~~~~l~~~l~-~~~~LlVlDdv~ 275 (1446)
....+.+.+. .+.-+||+|.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 105 TQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhcCCceEEEEeCch
Confidence 2233444443 467788899874
No 242
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.43 E-value=0.18 Score=60.88 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.++|.+|+||||+|+.++.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987
No 243
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.34 E-value=0.2 Score=59.30 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=54.5
Q ss_pred EEEEECCCCCChhhHHHhcccccCCCCCcEEE-EE---------cc----C----hHHHHhhCCCCceecCCCChHhHHH
Q 042296 268 LLVLDDVWNENYNDWIDLSRPFEAGAPGSKIV-VT---------TR----N----QAVVAIMGTVPAYPLKELSDEDCLN 329 (1446)
Q Consensus 268 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-vT---------tR----~----~~v~~~~~~~~~~~l~~L~~~~~~~ 329 (1446)
++++|++..-+...+..+...+...... -+| .| |. . +.+...+ ..+.+.+++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 8999999877666666666665543334 334 44 32 1 1122222 347999999999999
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHHh-CCchhHHH
Q 042296 330 VFTQHSLGTRDFNMHKSLEEIGKKIVIKC-NGLPLAAK 366 (1446)
Q Consensus 330 lf~~~a~~~~~~~~~~~~~~~~~~i~~~c-~glPlai~ 366 (1446)
.+...+..... ... ++....|++.+ +|.|-...
T Consensus 374 iL~~~~~~~~~-~~~---~~~~~~i~~~a~~g~~r~a~ 407 (456)
T 2c9o_A 374 IIKIRAQTEGI-NIS---EEALNHLGEIGTKTTLRYSV 407 (456)
T ss_dssp HHHHHHHHHTC-CBC---HHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHhCC-CCC---HHHHHHHHHHccCCCHHHHH
Confidence 99877521111 111 34556677777 77775443
No 244
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.32 E-value=0.27 Score=53.43 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=64.8
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc-CCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL-SQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~ 266 (1446)
+.++|++|+||||||+.++.. ... ..+++...+-.+. ...........+.+.. ...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~-----------------~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM-----------------YVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS-----------------TTHHHHHHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh-----------------hhhHHHHHHHHHHHHHHhcCC
Confidence 679999999999999999873 221 2334433221100 0000111122222221 3457
Q ss_pred EEEEEECCCCCCh-----------hhHHHhcccccCC--CCCcEEEEEccChHHHHhh-----CCCCceecCCCChHhHH
Q 042296 267 FLLVLDDVWNENY-----------NDWIDLSRPFEAG--APGSKIVVTTRNQAVVAIM-----GTVPAYPLKELSDEDCL 328 (1446)
Q Consensus 267 ~LlVlDdv~~~~~-----------~~~~~~~~~l~~~--~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~ 328 (1446)
.++++|+++.... .....+...+..+ ....-++.+|..+++.... .-...+.+...+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 8999999864210 0011111122211 1244566677766544221 11245678888888888
Q ss_pred HHHHhhc
Q 042296 329 NVFTQHS 335 (1446)
Q Consensus 329 ~lf~~~a 335 (1446)
++|....
T Consensus 185 ~il~~~~ 191 (274)
T 2x8a_A 185 AILKTIT 191 (274)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887665
No 245
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.91 E-value=0.097 Score=58.81 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=52.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc---------cC-----CceEEEEeCCCCCHHHHHHHHHHHhcCCCC-------
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD---------HF-----DLKAWTCVSEDFDITRITKSILNSIGTDQN------- 245 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------- 245 (1446)
.+.|+|.+|+||||+|.+++....... .. ..++|++....++..++.+ ++++++....
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~ 178 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNTF 178 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCEE
Confidence 457999999999999999886321111 11 3688999888887776654 4455543210
Q ss_pred -CCCCCHH---HHHHHHHHHcC--CceEEEEEECC
Q 042296 246 -VDSLDFD---KLQVELKKQLS--QKKFLLVLDDV 274 (1446)
Q Consensus 246 -~~~~~~~---~~~~~l~~~l~--~~~~LlVlDdv 274 (1446)
....+.+ ++...+.+.++ .+.-+||+|.+
T Consensus 179 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 179 VARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp EEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 23334444443 35568888887
No 246
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.70 E-value=0.16 Score=53.85 Aligned_cols=114 Identities=17% Similarity=0.059 Sum_probs=59.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--------------------
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV-------------------- 246 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------------------- 246 (1446)
.+.|+|..|+|||||++.++... ...=..+.|+.... ...++...+ .+++.....
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQW 99 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCcee
Confidence 45789999999999999998532 11123456665433 344443333 233321100
Q ss_pred --CCCCHHHHHHHHHHHcC---CceEEEEEECCCCC---ChhhHHHhcccccC--CCCCcEEEEEccCh
Q 042296 247 --DSLDFDKLQVELKKQLS---QKKFLLVLDDVWNE---NYNDWIDLSRPFEA--GAPGSKIVVTTRNQ 305 (1446)
Q Consensus 247 --~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~---~~~~~~~~~~~l~~--~~~gs~iivTtR~~ 305 (1446)
...+.+++...+.+.+. -+..+||+|..-.. +......+...+.. ...|..||+||...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11145555555554442 23349999997521 11222233222221 12477888888765
No 247
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.59 E-value=0.23 Score=64.03 Aligned_cols=131 Identities=12% Similarity=0.121 Sum_probs=60.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchh---ccC-C-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ---DHF-D-LKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ 261 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~---~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 261 (1446)
.+.++|.+|+||||+|+.+++...-. ... + .+++++++.- .. +.. ...+.......+.+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l----------~~--g~~---~~g~~~~~l~~~~~~ 257 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL----------LA--GAK---YRGEFEERLKAVIQE 257 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------------------CHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh----------hc--cCc---cchHHHHHHHHHHHH
Confidence 35799999999999999998732110 111 1 1223332211 00 000 111222222222222
Q ss_pred c-C-CceEEEEEECCCCCCh-----hhHH---HhcccccCCCCCcEEEEEccChHHHH-----hh-CCCCceecCCCChH
Q 042296 262 L-S-QKKFLLVLDDVWNENY-----NDWI---DLSRPFEAGAPGSKIVVTTRNQAVVA-----IM-GTVPAYPLKELSDE 325 (1446)
Q Consensus 262 l-~-~~~~LlVlDdv~~~~~-----~~~~---~~~~~l~~~~~gs~iivTtR~~~v~~-----~~-~~~~~~~l~~L~~~ 325 (1446)
+ . +++.+|++|++..-.. ..++ .+...+ .. .+..+|.+|....... .+ .-...+.+.+++.+
T Consensus 258 ~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~ 335 (854)
T 1qvr_A 258 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVE 335 (854)
T ss_dssp HHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHH
T ss_pred HHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHH
Confidence 2 2 4688999999964310 0011 122222 12 2334555554333211 11 11245889999999
Q ss_pred hHHHHHHhh
Q 042296 326 DCLNVFTQH 334 (1446)
Q Consensus 326 ~~~~lf~~~ 334 (1446)
+..+++...
T Consensus 336 e~~~iL~~~ 344 (854)
T 1qvr_A 336 ETISILRGL 344 (854)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988643
No 248
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.43 E-value=0.14 Score=60.70 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=59.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC-----CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF-----DLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
+-++|.+|+|||++|+.+++. +...+ ...-++.+.-. ....+. -......+... .-
T Consensus 204 ~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~-----------~~~~g~---~e~~~~~~~~~---~~ 264 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG-----------TKYRGE---FEDRLKKVMDE---IR 264 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC------------------------CTTHHHHHHH---HH
T ss_pred eEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC-----------ccccch---HHHHHHHHHHH---HH
Confidence 468999999999999999873 32211 11112222111 000000 01122222222 22
Q ss_pred CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhh-------CCCCceecCCCChHhHHHHHHhhc
Q 042296 263 SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM-------GTVPAYPLKELSDEDCLNVFTQHS 335 (1446)
Q Consensus 263 ~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 335 (1446)
+.++.+|++|.- . +....+...+.. ...++|.+|........+ .-...+.+...+.++..+++...+
T Consensus 265 ~~~~~iLfiD~~--~--~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 265 QAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCeEEEEeCc--h--hHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 356788999921 1 222233333332 235666666544311111 112358999999999999998765
No 249
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.29 E-value=0.11 Score=48.89 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=44.3
Q ss_pred ceeeccCcccc--ccCcccccccccceeeccCcccccccccc-ccCcccceeecccCCC
Q 042296 597 RYLNLSRTCIE--ILPDSINKLYNLHTLLLEDCDRLKKLCAD-MGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 597 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 652 (1446)
.+++.++++++ .+|..+. .+|++|+|++| .+..+|.. |..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47888999998 8997543 46999999998 58888765 7889999999999986
No 250
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.28 E-value=5.9 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.1
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++.++|.+|+||||++..++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHH
Confidence 4678999999999999988875
No 251
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=91.84 E-value=1.1 Score=50.62 Aligned_cols=153 Identities=11% Similarity=-0.022 Sum_probs=91.3
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH-cCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQ-LSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~ 266 (1446)
.-++|..|.||++.|+.+.+... ...|+....+.+....+ ..++...+... +-+++
T Consensus 21 yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~plf~~~ 77 (343)
T 1jr3_D 21 YLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD----------------------WNAIFSLCQAMSLFASR 77 (343)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC----------------------HHHHHHHHHHHHHCCSC
T ss_pred EEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC----------------------HHHHHHHhcCcCCccCC
Confidence 35789999999999998876321 22343222222322223 33333332221 23566
Q ss_pred EEEEEECCCC-CChhhHHHhcccccCCCCCcEEEEEccC-------hHHHHhhC-CCCceecCCCChHhHHHHHHhhccC
Q 042296 267 FLLVLDDVWN-ENYNDWIDLSRPFEAGAPGSKIVVTTRN-------QAVVAIMG-TVPAYPLKELSDEDCLNVFTQHSLG 337 (1446)
Q Consensus 267 ~LlVlDdv~~-~~~~~~~~~~~~l~~~~~gs~iivTtR~-------~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~ 337 (1446)
-++|+|++.. .....++.+...+..-.+++.+|++|.. ..+...+. ....++..+++.++..+.+.+.+-.
T Consensus 78 kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 78 QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 7888999866 4445666666655544457777776642 24454443 3357888999998888777776532
Q ss_pred CCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 042296 338 TRDFNMHKSLEEIGKKIVIKCNGLPLAAKT 367 (1446)
Q Consensus 338 ~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 367 (1446)
.+. ... .+.+..+++.++|...++..
T Consensus 158 ~g~-~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 158 LNL-ELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTC-EEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred cCC-CCC---HHHHHHHHHHhchHHHHHHH
Confidence 221 111 35567788899988876654
No 252
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.70 E-value=0.5 Score=55.79 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=65.9
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC----
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS---- 263 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---- 263 (1446)
+.|+|.+|+||||||+.++... . ...+.++.+.-.+ . -.......++..++
T Consensus 67 vLL~GppGtGKTtLaraIa~~~--~---~~~i~i~g~~~~~--------------~------~~g~~~~~v~~lfq~a~~ 121 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFVE--------------M------FVGVGAARVRDLFETAKR 121 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT--T---CCEEEEEGGGGTS--------------S------CTTHHHHHHHHHTTTSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHh--C---CCEEEEehhHHHH--------------h------hhhhHHHHHHHHHHHHHh
Confidence 5799999999999999999732 2 1223333321100 0 00111223333333
Q ss_pred CceEEEEEECCCCCC----------hhhH----HHhcccccCC--CCCcEEEEEccChHHHHh-h----CCCCceecCCC
Q 042296 264 QKKFLLVLDDVWNEN----------YNDW----IDLSRPFEAG--APGSKIVVTTRNQAVVAI-M----GTVPAYPLKEL 322 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~----------~~~~----~~~~~~l~~~--~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L 322 (1446)
....++++|+++.-. ...+ ..+...+..+ ..+..|+.||..+++... . .....+.+...
T Consensus 122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence 235799999995321 1111 2222222222 234456667776654321 1 11246788888
Q ss_pred ChHhHHHHHHhhc
Q 042296 323 SDEDCLNVFTQHS 335 (1446)
Q Consensus 323 ~~~~~~~lf~~~a 335 (1446)
+.++-.+++..++
T Consensus 202 d~~~R~~IL~~~~ 214 (499)
T 2dhr_A 202 DVKGREQILRIHA 214 (499)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH
Confidence 8888888887665
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.59 E-value=0.8 Score=58.31 Aligned_cols=132 Identities=19% Similarity=0.244 Sum_probs=68.0
Q ss_pred ceeEccCCchHHHHHHHHHcccchh---c-cCCceEEE-EeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQ---D-HFDLKAWT-CVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~---~-~F~~~~wv-~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
+-++|.+|+||||+|+.+++..... . .+...+|. ..+. + +... . .....+.....+.+.+
T Consensus 210 vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l-------~~~~-~-~~g~~e~~l~~~~~~~ 274 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L-------LAGT-K-YRGDFEKRFKALLKQL 274 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CCC-C-CSSCHHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H-------hccc-c-ccchHHHHHHHHHHHH
Confidence 4689999999999999998732111 0 12233321 1110 0 0001 1 1223343333343433
Q ss_pred -CCceEEEEEECCCCC--------ChhhHHHhcccccCCCCCcEEEEEccChHHHHhhC-------CCCceecCCCChHh
Q 042296 263 -SQKKFLLVLDDVWNE--------NYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIMG-------TVPAYPLKELSDED 326 (1446)
Q Consensus 263 -~~~~~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~-------~~~~~~l~~L~~~~ 326 (1446)
+.++.+|++|++..- ...+...+...+... .+.++|.+|.......... ....+.+...+.++
T Consensus 275 ~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e 353 (758)
T 1r6b_X 275 EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEE 353 (758)
T ss_dssp SSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHH
T ss_pred HhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHH
Confidence 346789999999643 122222333333322 3456666665443322111 11257888889888
Q ss_pred HHHHHHhhc
Q 042296 327 CLNVFTQHS 335 (1446)
Q Consensus 327 ~~~lf~~~a 335 (1446)
..+++...+
T Consensus 354 ~~~il~~l~ 362 (758)
T 1r6b_X 354 TVQIINGLK 362 (758)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887543
No 254
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.56 E-value=0.14 Score=56.41 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+-++|++|+|||++|+.+++.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999983
No 255
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.45 E-value=0.54 Score=52.92 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=65.5
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcC-C--
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLS-Q-- 264 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~-- 264 (1446)
+-++|.+|+|||++|+.+++. .... ...+.........++..... ..... ... ... +
T Consensus 49 vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~~~---~~~~~-~~~-----------~~~~g~l 108 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGTMI---YNQHK-GNF-----------EVKKGPV 108 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEEEE---EETTT-TEE-----------EEEECTT
T ss_pred EEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCcee---ecCCC-Cce-----------EeccCcc
Confidence 468999999999999999872 2222 22233333333332211110 00000 000 000 0
Q ss_pred ceEEEEEECCCCCChhhHHHhcccccC-----------CCCCcEEEEEccChH------HHHh-hCCCC-ceecCCCChH
Q 042296 265 KKFLLVLDDVWNENYNDWIDLSRPFEA-----------GAPGSKIVVTTRNQA------VVAI-MGTVP-AYPLKELSDE 325 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~~~~~~~~~~~l~~-----------~~~gs~iivTtR~~~------v~~~-~~~~~-~~~l~~L~~~ 325 (1446)
...++++|++..........+...+.. ......|+.|+.... +... ..-.. .+.+...+.+
T Consensus 109 ~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~ 188 (331)
T 2r44_A 109 FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKE 188 (331)
T ss_dssp CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHH
T ss_pred cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHH
Confidence 125899999977654444333332221 123455665665221 1111 11112 4788999999
Q ss_pred hHHHHHHhhcc
Q 042296 326 DCLNVFTQHSL 336 (1446)
Q Consensus 326 ~~~~lf~~~a~ 336 (1446)
+-.+++.+.+.
T Consensus 189 ~~~~il~~~~~ 199 (331)
T 2r44_A 189 SELEVMRRVSN 199 (331)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhccc
Confidence 99999887763
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.39 E-value=0.48 Score=59.10 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=78.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+-++|++|+|||+||+++++. ...+| +.|+.+ ++.... .......+........+..+
T Consensus 240 GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~----------~l~sk~------~gese~~lr~lF~~A~~~~P 298 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----------EIMSKL------AGESESNLRKAFEEAEKNAP 298 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH----------HHHSSC------TTHHHHHHHHHHHHHTTSCS
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH----------Hhhccc------chHHHHHHHHHHHHHHHcCC
Confidence 3468899999999999999983 33332 233321 111110 11222333334444446778
Q ss_pred EEEEEECCCCCC-------hhh----HHHhcccccC--CCCCcEEEEEccChHHH-HhhC----CCCceecCCCChHhHH
Q 042296 267 FLLVLDDVWNEN-------YND----WIDLSRPFEA--GAPGSKIVVTTRNQAVV-AIMG----TVPAYPLKELSDEDCL 328 (1446)
Q Consensus 267 ~LlVlDdv~~~~-------~~~----~~~~~~~l~~--~~~gs~iivTtR~~~v~-~~~~----~~~~~~l~~L~~~~~~ 328 (1446)
.+|++|+++.-- ... ...+...+.. ...+.-||.||...+.. ..+- -...+++...+.++-.
T Consensus 299 sIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~ 378 (806)
T 3cf2_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378 (806)
T ss_dssp EEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHH
T ss_pred eEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHH
Confidence 999999985421 000 1112211111 12344566677654322 1111 1235788888888888
Q ss_pred HHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 329 NVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 329 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
++|..+.-... ....-++ .+|++++.|..
T Consensus 379 ~IL~~~l~~~~-~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 379 EILQIHTKNMK-LADDVDL----EQVANETHGHV 407 (806)
T ss_dssp HHHHHTCSSSE-ECTTCCH----HHHHHHCCSCC
T ss_pred HHHHHHhcCCC-CCcccCH----HHHHHhcCCCC
Confidence 88887653221 1122223 34777777764
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.36 E-value=0.34 Score=53.09 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=44.9
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
..+.++|.+|+||||++..++........ ..+..+.... .....+.+....+..+.+.. ...+..++...+.. + .
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~al~~-~-~ 181 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE-VCYTKEEFQQAKEL-F-S 181 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-BCSSHHHHHHHHHH-G-G
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE-ecCCHHHHHHHHHH-h-c
Confidence 36789999999999999998863221111 2345555432 12233334444433433221 12334444444443 3 4
Q ss_pred ceEEEEEECC
Q 042296 265 KKFLLVLDDV 274 (1446)
Q Consensus 265 ~~~LlVlDdv 274 (1446)
+.=++|+|-.
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 4557888943
No 258
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.77 E-value=0.57 Score=52.05 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=35.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSI 240 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 240 (1446)
.+.|.|.+|+||||+|..++.+....+ ..++|++.. .+..++...++...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 457889999999999999886432222 567777765 45667777766543
No 259
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.84 E-value=0.5 Score=54.07 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=35.6
Q ss_pred cceeEccCCchHHHHHHHHHcccch----hccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARL----QDHFDLKAWTCVSEDFDITRITKSILNSIGT 242 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 242 (1446)
.+.|+|.+|+|||||+..++-.... ...-..++|++....++..++. .+++.++.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 4579999999999999976521111 1123458888887766665543 35565553
No 260
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.71 E-value=0.28 Score=62.50 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=18.2
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+-++|.+|+|||++|+.+++
T Consensus 491 ~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 45889999999999999987
No 261
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.30 E-value=0.43 Score=61.53 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+-++|..|+|||++|+.+++
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999987
No 262
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.19 E-value=0.5 Score=49.84 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=28.6
Q ss_pred cceeEccCCchHHHHHHHHHcccch---hc-cCCceEEEEeCCCCCH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARL---QD-HFDLKAWTCVSEDFDI 229 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~ 229 (1446)
.++|+|..|+|||||++.++..... .. .-..++|+.-...+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4689999999999999999752111 11 1245778776554443
No 263
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.11 E-value=0.11 Score=59.74 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=74.7
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH-HcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKK-QLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~~ 265 (1446)
.+-+||++|.|||++|+++++ +....| +.+..+.- ... .....+.....+.. .-...
T Consensus 217 GvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l--------------~~~---~vGese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQL--------------VQM---YIGEGAKLVRDAFALAKEKA 274 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG--------------CSS---CSSHHHHHHHHHHHHHHHHC
T ss_pred eeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhh--------------hhc---ccchHHHHHHHHHHHHHhcC
Confidence 456899999999999999998 333332 22333211 100 01111222222222 22346
Q ss_pred eEEEEEECCCCC-------Ch---hh----HHHhcccccC--CCCCcEEEEEccChHHHHh-h-CC---CCceecCCCCh
Q 042296 266 KFLLVLDDVWNE-------NY---ND----WIDLSRPFEA--GAPGSKIVVTTRNQAVVAI-M-GT---VPAYPLKELSD 324 (1446)
Q Consensus 266 ~~LlVlDdv~~~-------~~---~~----~~~~~~~l~~--~~~gs~iivTtR~~~v~~~-~-~~---~~~~~l~~L~~ 324 (1446)
+++|++|+++.- .. .. ...+...+.. ...+..||.||..++.... + .. ...+.+..-+.
T Consensus 275 P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCH
T ss_pred CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCH
Confidence 899999998421 00 01 1112222221 1234567778876543321 1 11 23577887788
Q ss_pred HhHHHHHHhhccCCCCCCCChhHHHHHHHHHHHhCCch
Q 042296 325 EDCLNVFTQHSLGTRDFNMHKSLEEIGKKIVIKCNGLP 362 (1446)
Q Consensus 325 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~glP 362 (1446)
++-.++|..+.-... ....-++ ..|++.+.|.-
T Consensus 355 ~~R~~Il~~~~~~~~-~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 355 DSRAQILQIHSRKMT-TDDDINW----QELARSTDEFN 387 (434)
T ss_dssp HHHHHHHHHHHHHSC-BCSCCCH----HHHHHHCSSCC
T ss_pred HHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCCC
Confidence 887888876552211 1111223 34666777653
No 264
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.08 E-value=0.56 Score=54.14 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=32.5
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC-CceEEEEeCCCC-CHHHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF-DLKAWTCVSEDF-DITRITKSIL 237 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~ 237 (1446)
..|+|..|+||||||+.+..+. ...+ +..+++-+++.. ...++..++.
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~--~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNI--AQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHH--HHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHhhh--hhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 4689999999999999998742 2223 455667777664 3445555453
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.00 E-value=0.15 Score=51.35 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999999986
No 266
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.90 E-value=0.57 Score=59.59 Aligned_cols=125 Identities=10% Similarity=0.079 Sum_probs=60.6
Q ss_pred ceeEccCCchHHHHHHHHHcccc---hhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDAR---LQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQ 264 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~---~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 264 (1446)
+-++|.+|+|||++|+.+++... +.......-++.+.- -....+. -...... .+......
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------g~~~~G~---~e~~l~~---~~~~~~~~ 266 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------GTKYRGE---FEDRLKK---VMDEIRQA 266 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------------CTTHHH---HHHHHHTC
T ss_pred eEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------cccccch---HHHHHHH---HHHHHHhc
Confidence 46899999999999999987320 000111111222211 0000000 0112222 23333346
Q ss_pred ceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHHHhh-------CCCCceecCCCChHhHHHHHHhhc
Q 042296 265 KKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVVAIM-------GTVPAYPLKELSDEDCLNVFTQHS 335 (1446)
Q Consensus 265 ~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 335 (1446)
++.+|++|.. . +....+...+. . ...++|.||......... .-...+.+...+.++..+++....
T Consensus 267 ~~~iLfiD~~--~--~~~~~L~~~l~-~-~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 267 GNIILFIDAA--I--DASNILKPSLA-R-GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CCCEEEECC------------CCCTT-S-SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CCEEEEEcCc--h--hHHHHHHHHHh-c-CCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 7889999921 1 11222333333 2 245666666544311111 111458999999999999998654
No 267
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.83 E-value=0.75 Score=51.08 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=34.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSI 240 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 240 (1446)
.+.|.|.+|+||||+|..++.+... .=..++|++. +.+..++...++...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 4578899999999999999874322 2235666665 456677777776554
No 268
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.72 E-value=0.29 Score=54.43 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=26.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchh-ccCCceEEEEeCCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQ-DHFDLKAWTCVSEDF 227 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 227 (1446)
.+.|+|..|+|||||++.+.+..... ..++ ++++-+++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 35799999999999999988632111 1233 3456666553
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.70 E-value=0.4 Score=54.13 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=49.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC----CceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----------CCCCCH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF----DLKAWTCVSEDFDITRITKSILNSIGTDQN-----------VDSLDF 251 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----------~~~~~~ 251 (1446)
.+.|+|..|+|||||+..++......... ..++|++....+...++ ..+++..+.... ......
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~~~ 211 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSNHQ 211 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChHHH
Confidence 56799999999999999998632111111 23488887665544433 334444332110 001112
Q ss_pred HHHHHHHHHHcC------CceEEEEEECCCC
Q 042296 252 DKLQVELKKQLS------QKKFLLVLDDVWN 276 (1446)
Q Consensus 252 ~~~~~~l~~~l~------~~~~LlVlDdv~~ 276 (1446)
.++...++..++ .+.-+||+|.+-.
T Consensus 212 ~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 212 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 233334444443 4677999999843
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.64 E-value=0.17 Score=50.72 Aligned_cols=21 Identities=19% Similarity=-0.017 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999986
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.50 E-value=0.17 Score=50.94 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=17.3
Q ss_pred cceeEccCCchHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLV 205 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v 205 (1446)
.+.|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999999998
No 272
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.31 E-value=1.1 Score=48.90 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=41.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhc-cCCceEEEEeCCCCCHHHHHHHHHHH------hcCCCCCCCCCHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQD-HFDLKAWTCVSEDFDITRITKSILNS------IGTDQNVDSLDFDKLQVELK 259 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~~~------l~~~~~~~~~~~~~~~~~l~ 259 (1446)
.++|+|..|+||||+|+.+........ ....+..|+...-+-.......+... +.........+.+.+.+.+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~ 112 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLN 112 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHHHHH
Confidence 578999999999999998876322111 12233333444322223444444332 11111125566676766666
Q ss_pred HHcCC
Q 042296 260 KQLSQ 264 (1446)
Q Consensus 260 ~~l~~ 264 (1446)
....+
T Consensus 113 ~l~~g 117 (290)
T 1odf_A 113 TIFNN 117 (290)
T ss_dssp HHTC-
T ss_pred Hhhcc
Confidence 65444
No 273
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.24 E-value=0.23 Score=49.91 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.6
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998875
No 274
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.97 E-value=0.19 Score=51.71 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+|+.+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999986
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.82 E-value=0.2 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.5
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|+.|+||||+++.+...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999873
No 276
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=87.80 E-value=0.21 Score=49.99 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+|+.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999986
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.30 E-value=0.22 Score=50.19 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 357899999999999999986
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.26 E-value=0.23 Score=50.42 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.++|+.|+||||+|+.+..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999986
No 279
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.18 E-value=0.97 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.273 Sum_probs=19.1
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.++|.+|+||||++..++.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3567889999999999999886
No 280
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.11 E-value=0.79 Score=62.67 Aligned_cols=82 Identities=20% Similarity=0.123 Sum_probs=54.2
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.+... .+...++....+++..
T Consensus 1429 ~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 4568999999999999999873 223334678888888777665 4455532211 2234455556666554
Q ss_pred C-CceEEEEEECCC
Q 042296 263 S-QKKFLLVLDDVW 275 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~ 275 (1446)
+ .+.-+||+|.+.
T Consensus 1502 r~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHTCCSEEEESCGG
T ss_pred hcCCCCEEEEcChh
Confidence 3 567799999984
No 281
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=87.08 E-value=1.2 Score=51.60 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=54.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CC-----CCCCC----
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNSIGTD-------QN-----VDSLD---- 250 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~-----~~~~~---- 250 (1446)
++|+|..|+|||+|+.++.++. .+.+-+.++++-+++.. .+.++.+++.+.=... .. .....
T Consensus 168 ~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R 246 (498)
T 1fx0_B 168 IGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGAR 246 (498)
T ss_dssp EEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHH
T ss_pred EEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHH
Confidence 4789999999999999998742 23345788888888776 4566777766532111 00 00011
Q ss_pred --HHHHHHHHHHHc---CCceEEEEEECC
Q 042296 251 --FDKLQVELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 251 --~~~~~~~l~~~l---~~~~~LlVlDdv 274 (1446)
.....-.+.+++ +++.+|+++||+
T Consensus 247 ~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 247 MRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp TTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 112233344555 368999999998
No 282
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=86.89 E-value=1.8 Score=49.81 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=36.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKSILNS 239 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~ 239 (1446)
.+|+|..|+|||+|+.++.+.. .+.+-+.++++-+++.. .+.++.+++.+.
T Consensus 156 ~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 156 IGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp EEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4689999999999999998732 23344667788887765 456677777654
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.88 E-value=0.26 Score=49.70 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+|||||++.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999976
No 284
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.82 E-value=0.61 Score=51.23 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=46.1
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHH--HHHHHHHHHhcCCCC--CCCCCHHHH-HHHHHH
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDIT--RITKSILNSIGTDQN--VDSLDFDKL-QVELKK 260 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~--~~~~~~~~~-~~~l~~ 260 (1446)
..+.|+|.+|+||||++..++.. ....=..+.++.. +.+... +-+...+++.+.+.. ....+...+ ...+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 35689999999999999999863 2222223445443 233322 223344555443211 112233332 234444
Q ss_pred HcCCceEEEEEECCC
Q 042296 261 QLSQKKFLLVLDDVW 275 (1446)
Q Consensus 261 ~l~~~~~LlVlDdv~ 275 (1446)
.+..+.-++|+|-.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 444555588888763
No 285
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.56 E-value=1.2 Score=56.48 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=63.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCce
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
.+.++|.+|+||||||+.++.. ....| +.+... + +.... .......+...+........
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~----------~----l~~~~--~g~~~~~l~~vf~~a~~~~p 298 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----------E----IMSKL--AGESESNLRKAFEEAEKNAP 298 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH----------H----HSSSS--TTHHHHHHHHHHHHHHHHCS
T ss_pred eEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch----------H----hhhhh--hhhHHHHHHHHHHHHHhcCC
Confidence 3578999999999999999873 33222 223221 1 11110 01111222222333333467
Q ss_pred EEEEEECCCCCCh------h-----hHHHhcccccC--CCCCcEEEEEccChHHHH-hhC---C-CCceecCCCChHhHH
Q 042296 267 FLLVLDDVWNENY------N-----DWIDLSRPFEA--GAPGSKIVVTTRNQAVVA-IMG---T-VPAYPLKELSDEDCL 328 (1446)
Q Consensus 267 ~LlVlDdv~~~~~------~-----~~~~~~~~l~~--~~~gs~iivTtR~~~v~~-~~~---~-~~~~~l~~L~~~~~~ 328 (1446)
.++++|++...-. . ....+...+.. ...+..||.||...+-.. .+. . ...+.+...+.++-.
T Consensus 299 ~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~ 378 (806)
T 1ypw_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378 (806)
T ss_dssp EEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHH
T ss_pred cEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHH
Confidence 8999999843100 0 01112111111 123456666766543221 111 1 134677778888888
Q ss_pred HHHHhhc
Q 042296 329 NVFTQHS 335 (1446)
Q Consensus 329 ~lf~~~a 335 (1446)
+++...+
T Consensus 379 ~il~~~~ 385 (806)
T 1ypw_A 379 EILQIHT 385 (806)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8887665
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.49 E-value=0.27 Score=50.76 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 287
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=86.49 E-value=0.084 Score=53.39 Aligned_cols=107 Identities=15% Similarity=0.040 Sum_probs=49.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHcCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQN-VDSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~ 266 (1446)
..++|..|+||||+|..++...... .. .+.++..... .+.-...+...++.... ....+.. .+.+.+.++.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~~~ 77 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEEDT 77 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCTTE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHH----HHHHHhcCCC
Confidence 4588999999999997666532111 11 2333332211 00000001111111000 0001111 2223334456
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccCh
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQ 305 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~ 305 (1446)
-+|++|.+..-+ .+|.+....+.+. |..|++|.+..
T Consensus 78 dvviIDE~Q~~~-~~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 78 RGVFIDEVQFFN-PSLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp EEEEECCGGGSC-TTHHHHHHHHHHT--TCEEEEEEESB
T ss_pred CEEEEECcccCC-HHHHHHHHHHHHC--CCCEEEEeecc
Confidence 799999986542 2354444433332 77899988754
No 288
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=86.34 E-value=0.27 Score=49.28 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999986
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.19 E-value=0.29 Score=49.30 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|++|+||||+|+.+..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999999986
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=85.93 E-value=0.3 Score=50.24 Aligned_cols=21 Identities=38% Similarity=0.435 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+|+.+..
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999987
No 291
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.88 E-value=0.3 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.6
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.|.|+.|+||||+|+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999986
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.82 E-value=0.29 Score=49.88 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987
No 293
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=85.64 E-value=0.33 Score=48.63 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.6
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
++|+|..|+|||||++.++..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999863
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=85.62 E-value=0.3 Score=50.43 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=18.4
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|+.|+||||+|+.+..
T Consensus 3 I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHH
Confidence 57899999999999999986
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.61 E-value=0.3 Score=49.90 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999987
No 296
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.53 E-value=0.32 Score=49.24 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+|+.+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999876
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=85.52 E-value=0.33 Score=48.63 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+|+.+..
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999876
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=85.49 E-value=0.33 Score=49.96 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+|+.+..
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999986
No 299
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.33 E-value=0.33 Score=49.15 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999976
No 300
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=85.30 E-value=0.34 Score=50.06 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|++|+||||+++.+..
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999976
No 301
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.20 E-value=0.31 Score=48.60 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=17.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 468999999999999997553
No 302
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.19 E-value=1.3 Score=48.54 Aligned_cols=89 Identities=13% Similarity=0.011 Sum_probs=47.1
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED-FDITRITKSILNSIGTDQN--VDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~l 262 (1446)
..+.++|.+|+||||++..++.. ....=..+.++...-. ......++...+..+.... ....+..++.....+.+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 35678899999999999988863 2222234555554322 2223334444554443211 02234554443333444
Q ss_pred C-CceEEEEEECCCC
Q 042296 263 S-QKKFLLVLDDVWN 276 (1446)
Q Consensus 263 ~-~~~~LlVlDdv~~ 276 (1446)
+ ++-=++|+|-.-.
T Consensus 177 ~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHTTCSEEEEECCCS
T ss_pred HhCCCCEEEEeCCCC
Confidence 3 3333788887543
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.09 E-value=0.33 Score=49.54 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999976
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.07 E-value=0.37 Score=48.82 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+|||||++.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999986
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.06 E-value=0.57 Score=46.03 Aligned_cols=22 Identities=36% Similarity=0.268 Sum_probs=19.6
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.|.|..|+||||++..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=84.96 E-value=0.36 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.6
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 357899999999999999975
No 307
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.92 E-value=0.52 Score=47.55 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=54.7
Q ss_pred cCceeEEEEeCCC-Ccc-----ccCccccCCCCCceeeccCcccc-----ccCcccccccccceeeccCcccccc-----
Q 042296 569 KLHRLKVFSLCGY-QIS-----ELPNSVGDLRYLRYLNLSRTCIE-----ILPDSINKLYNLHTLLLEDCDRLKK----- 632 (1446)
Q Consensus 569 ~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----- 632 (1446)
+-+.|+.|+|+++ .|. .+-..+..-..|+.|+|++|+|. .|-+.+..-+.|++|+|++|. ++.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHH
Confidence 5677888899875 654 23345556678899999998876 234455566788888888874 332
Q ss_pred ccccccCcccceeecccCC
Q 042296 633 LCADMGNLIKLHHLNNSTT 651 (1446)
Q Consensus 633 lp~~i~~L~~L~~L~l~~~ 651 (1446)
+-..+..-+.|++|+|+++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2233444456888888754
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=84.92 E-value=0.34 Score=50.02 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 468999999999999999875
No 309
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.68 E-value=0.32 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999876
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=84.66 E-value=0.37 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+|||||++.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 468999999999999999876
No 311
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.57 E-value=0.37 Score=48.87 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.+.|+.|+||||+|+.+..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999976
No 312
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.51 E-value=0.37 Score=47.80 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=18.3
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999886
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.49 E-value=0.38 Score=48.06 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999986
No 314
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=84.26 E-value=0.94 Score=46.25 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=18.4
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
++|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987
No 315
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.24 E-value=0.38 Score=51.59 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 457899999999999999986
No 316
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.20 E-value=0.43 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+|||||++.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 568999999999999999875
No 317
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=84.18 E-value=0.41 Score=49.49 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|+.|+||||+++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999875
No 318
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.17 E-value=1.8 Score=47.34 Aligned_cols=86 Identities=15% Similarity=0.065 Sum_probs=44.2
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHH--HHHHHHHHhcCCCCC--CCCCHHHHHH-HHHH
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITR--ITKSILNSIGTDQNV--DSLDFDKLQV-ELKK 260 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~~--~~~~~~~~~~-~l~~ 260 (1446)
..+.++|.+|+||||++..++.. ....=..+.++... ...... .+..+.+..+...-. ...+..++.. .+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 35678899999999999999863 22222234444432 222221 233344444432110 1234444433 3333
Q ss_pred HcCCceEEEEEECC
Q 042296 261 QLSQKKFLLVLDDV 274 (1446)
Q Consensus 261 ~l~~~~~LlVlDdv 274 (1446)
....+.=+||+|--
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 32234457888875
No 319
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.07 E-value=0.4 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|.|++|+||||+|+.++..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999873
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.06 E-value=0.46 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+||||+|+.+..
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 321
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=83.87 E-value=2.2 Score=47.51 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=25.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchh-ccCCceEEEEeCCC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQ-DHFDLKAWTCVSED 226 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 226 (1446)
..|+|..|+|||+|++++.+..... ..+. ++++-+++.
T Consensus 178 ~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 178 GMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred EEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 3689999999999999998742211 1222 245666654
No 322
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=83.87 E-value=0.41 Score=52.91 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=26.2
Q ss_pred ccccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeC
Q 042296 184 LVNEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVS 224 (1446)
Q Consensus 184 ~~~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 224 (1446)
..++++|+|-|||||||.|..+..- ....=..+.-|++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 3567899999999999988777642 22222245556655
No 323
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.85 E-value=0.41 Score=48.94 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999876
No 324
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=83.73 E-value=0.43 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+||||+++.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999976
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.60 E-value=0.43 Score=49.11 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999876
No 326
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.59 E-value=0.44 Score=48.33 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|+.|+||||+|+.+..
T Consensus 14 iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 327
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=83.58 E-value=0.44 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+||||+++.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 468999999999999999986
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.52 E-value=0.43 Score=48.86 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999976
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=83.50 E-value=0.43 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+||||+|+.+..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 330
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.50 E-value=0.42 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 6 lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999986
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.43 E-value=0.43 Score=48.96 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999986
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=83.18 E-value=0.47 Score=49.29 Aligned_cols=21 Identities=38% Similarity=0.321 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 333
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.15 E-value=2.1 Score=49.64 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=25.1
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhcc-CCceEEEEeC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDH-FDLKAWTCVS 224 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~-F~~~~wv~vs 224 (1446)
..+.++|.+|+||||+|..++.. .... =..+.-|+..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSAD 138 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecC
Confidence 46678899999999999988863 3322 1234555543
No 334
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=83.13 E-value=0.37 Score=54.25 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=57.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHH-HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITR-ITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQK 265 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (1446)
.+.|+|..|+||||+.+.+... +...-..++ +.+.++..... -...++.+..... .. ......++..|...
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~~~--~~---~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESKKCLVNQREVHR--DT---LGFSEALRSALRED 196 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCSSSEEEEEEBTT--TB---SCHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhccccceeeeeecc--cc---CCHHHHHHHHhhhC
Confidence 4678999999999999988752 221112222 22222211100 0000000000000 11 12344788888888
Q ss_pred eEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHHH
Q 042296 266 KFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAVV 308 (1446)
Q Consensus 266 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~ 308 (1446)
+=+|++|...+. ..+..+.... ..|.-||+||-..+.+
T Consensus 197 PdvillDEp~d~--e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMRDL--ETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCCCH--HHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999653 4444433332 2366788888776544
No 335
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=83.00 E-value=0.96 Score=52.33 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=47.3
Q ss_pred ceeEccCCchHHHHH-HHHHcccchhccCCc-eEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCCCCHHH----
Q 042296 188 AKVYGMGGLGKTTLA-QLVYNDARLQDHFDL-KAWTCVSEDF-DITRITKSILNSIGTDQ-------NVDSLDFDK---- 253 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~~---- 253 (1446)
..|+|..|+|||+|| ..+.+.. .-+. ++++-+++.. .+.++.+++.+.=.... ..++.....
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 468999999999996 4777632 2343 4677777664 35556666654211111 001111111
Q ss_pred HHHHHHHHc--CCceEEEEEECC
Q 042296 254 LQVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 254 ~~~~l~~~l--~~~~~LlVlDdv 274 (1446)
....+.+++ +++.+||++||+
T Consensus 241 ~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 241 AGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHcCCcEEEEEecH
Confidence 112233333 589999999998
No 336
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.92 E-value=0.47 Score=48.46 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=18.4
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987
No 337
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.84 E-value=0.49 Score=50.55 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+++.++.
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999984
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.80 E-value=0.48 Score=49.26 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999987
No 339
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.75 E-value=2.1 Score=49.30 Aligned_cols=87 Identities=14% Similarity=0.033 Sum_probs=44.1
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCC--CCCCHHHHHH-HHHH
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFD--ITRITKSILNSIGTDQNV--DSLDFDKLQV-ELKK 260 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~--~~~~~~~~~~-~l~~ 260 (1446)
..+.++|.+|+||||++..++... ...=..++.+... .+. ..+.+.......+.+... ...+...... .+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D-~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAAD-VYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEEC-CSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecC-ccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence 466788999999999999888632 2221234444432 232 223333444444432211 2233333333 3333
Q ss_pred HcCCceEEEEEECCC
Q 042296 261 QLSQKKFLLVLDDVW 275 (1446)
Q Consensus 261 ~l~~~~~LlVlDdv~ 275 (1446)
......=++|+|-..
T Consensus 175 a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 322344466788764
No 340
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=82.74 E-value=1.1 Score=46.54 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987
No 341
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.61 E-value=0.54 Score=49.03 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999876
No 342
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=82.52 E-value=0.37 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=14.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEEECCC----CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999876
No 343
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=82.51 E-value=2.2 Score=49.80 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=32.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCC-HHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFD-ITRITKSI 236 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 236 (1446)
.+|.|..|+|||+|++++.+. .+-+.++++-+++... +.++.+++
T Consensus 230 ~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 230 AAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp EEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred EEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 368899999999999998763 2335678888887765 45555554
No 344
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.50 E-value=0.57 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.4
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.|.|+.|+||||+|+.+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999876
No 345
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.38 E-value=0.51 Score=49.22 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.0
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 346
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.27 E-value=1.3 Score=45.06 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=17.3
Q ss_pred eeEccCCchHHHHHHHHHcc
Q 042296 189 KVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 189 ~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.|=|.-|+||||.++.+++.
T Consensus 4 ~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 4 TFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45699999999999999873
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=82.27 E-value=0.51 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999986
No 348
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=82.22 E-value=0.57 Score=45.71 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++++|..|+|||||++.++.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999986
No 349
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=82.21 E-value=0.55 Score=48.55 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 568999999999999999876
No 350
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.15 E-value=3.7 Score=49.01 Aligned_cols=51 Identities=8% Similarity=-0.023 Sum_probs=34.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSI 240 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 240 (1446)
.+.|.|.+|+||||+|.+++.+.... +=..++|++... +..++...++...
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 45688999999999999988643211 113577776644 4667777766544
No 351
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.15 E-value=0.57 Score=47.41 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+|||||++.+..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 568999999999999999885
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.15 E-value=0.52 Score=49.12 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=18.0
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|++|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999875
No 353
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.12 E-value=0.54 Score=49.90 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+++.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999986
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.05 E-value=0.53 Score=48.01 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999876
No 355
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=82.02 E-value=0.63 Score=53.14 Aligned_cols=87 Identities=10% Similarity=0.215 Sum_probs=48.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchh--------ccCC-ceEEEEeCCCC-CHHHHHHHHHHH--hcC-----CCCCCCCC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQ--------DHFD-LKAWTCVSEDF-DITRITKSILNS--IGT-----DQNVDSLD 250 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~ 250 (1446)
.+|.|..|+|||+|+.++++..... ++=+ .++++-+++.. .+.++.+++.+. +.. ....++.-
T Consensus 150 ~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~ 229 (464)
T 3gqb_B 150 LPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTI 229 (464)
T ss_dssp CCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTH
T ss_pred EEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHH
Confidence 4789999999999999998754331 1111 45666666553 455566654432 100 00101111
Q ss_pred HH----HHHHHHHHHc---CCceEEEEEECC
Q 042296 251 FD----KLQVELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 251 ~~----~~~~~l~~~l---~~~~~LlVlDdv 274 (1446)
.. .....+.+++ +++.+||++||+
T Consensus 230 ~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 230 ERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11 1122334444 379999999998
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.00 E-value=0.52 Score=50.63 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.2
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|+|..|+||||||+.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999973
No 357
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=82.00 E-value=0.52 Score=49.58 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999876
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=81.88 E-value=0.56 Score=48.22 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|..|+||||+|+.+..
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999876
No 359
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.88 E-value=1.5 Score=59.16 Aligned_cols=83 Identities=22% Similarity=0.144 Sum_probs=55.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|.+|+||||||.+++... ...=..++|++....++... ++.++.+... ...+.+++...++...
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv 457 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHHH
Confidence 45688999999999999998742 22335788998888777642 5555543211 2345666666665544
Q ss_pred -CCceEEEEEECCCC
Q 042296 263 -SQKKFLLVLDDVWN 276 (1446)
Q Consensus 263 -~~~~~LlVlDdv~~ 276 (1446)
+.+.-+||+|-+..
T Consensus 458 ~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 458 RSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHTCCSEEEESCSTT
T ss_pred HhcCCCEEEECCHHH
Confidence 34566999999854
No 360
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.68 E-value=1.6 Score=59.05 Aligned_cols=81 Identities=20% Similarity=0.138 Sum_probs=59.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l 262 (1446)
.+.|+|+.|+||||||.++.. +..+.=...+|+.+....|..- ++.+|.+... .+...++....+.+.+
T Consensus 1433 ~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~ 1505 (1706)
T 3cmw_A 1433 IVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 1505 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHH
Confidence 467999999999999999986 4455556789999888877753 7777766432 4455566666666666
Q ss_pred C-CceEEEEEECC
Q 042296 263 S-QKKFLLVLDDV 274 (1446)
Q Consensus 263 ~-~~~~LlVlDdv 274 (1446)
+ +..-+||+|-|
T Consensus 1506 ~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1506 RSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHTCCSEEEESCS
T ss_pred HcCCCCEEEEccH
Confidence 4 56679999998
No 361
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=81.65 E-value=0.63 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4689999999999999998863
No 362
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=81.43 E-value=0.57 Score=51.73 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHh
Confidence 578999999999999999886
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=81.39 E-value=0.57 Score=48.64 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999987
No 364
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=81.36 E-value=0.57 Score=48.23 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|+.|+||||+|+.+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 365
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=81.24 E-value=0.58 Score=49.02 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.++.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999986
No 366
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.14 E-value=0.51 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999876
No 367
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=81.10 E-value=0.62 Score=49.86 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+||||+++.+..
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 368
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=81.07 E-value=2.2 Score=44.97 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=45.6
Q ss_pred cceeEccCCchHHHHHHHHHcc-cchhccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCC-------------------
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND-ARLQDHF-DLKAWTCVSEDFDITRITKSILNSIGTDQN------------------- 245 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~-~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------- 245 (1446)
.+.|.|..|+||||+...+.-+ ....... ...+.+.+....-..++.+.+...++....
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHAS 157 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSE
T ss_pred EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCe
Confidence 4578999999999866554422 1111222 123333333222333444555544432210
Q ss_pred CCCCCHHHHHHHHHHHcCCceEEEEEECCCC
Q 042296 246 VDSLDFDKLQVELKKQLSQKKFLLVLDDVWN 276 (1446)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 276 (1446)
....+.+.+...+.+.+++- -+||+|.+..
T Consensus 158 Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 158 IMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 01124566666666544443 4789999975
No 369
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=81.03 E-value=3.5 Score=48.40 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=32.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSIL 237 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 237 (1446)
.+.|.|.+|+||||+|..++.+.... .=..++|++... +..++...++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 56788999999999999998743221 113577776543 4456666654
No 370
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=80.96 E-value=1.7 Score=49.67 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=49.3
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCC----ceEEEEeCCCC-CHHHHHHHHHHH--hcC-----CCCCCCCCHH---
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFD----LKAWTCVSEDF-DITRITKSILNS--IGT-----DQNVDSLDFD--- 252 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~~--- 252 (1446)
.+|+|..|+|||+|+.++++.... +-+ .++++-+++.. .+.++.+++.+. +.. ....++.-..
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 478999999999999999874332 223 55666666553 456666665442 100 0010111111
Q ss_pred -HHHHHHHHHc---CCceEEEEEECC
Q 042296 253 -KLQVELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 253 -~~~~~l~~~l---~~~~~LlVlDdv 274 (1446)
.....+.+++ .++.+|+++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1122334444 379999999998
No 371
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.87 E-value=0.54 Score=47.37 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=18.5
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.++|++|+||||+|..+++.
T Consensus 61 ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999988873
No 372
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.80 E-value=3 Score=46.17 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.6
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.|+|..|+||||+++.++.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999886
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.75 E-value=0.63 Score=47.93 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999986
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=80.70 E-value=0.65 Score=46.65 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999986
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=80.60 E-value=0.65 Score=49.50 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|..|+||||+|+.+..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 376
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=80.50 E-value=3.7 Score=48.09 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=34.6
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSI 240 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 240 (1446)
.+.|.|.+|+||||+|..++.+.... .=..++|++.. .+..++...++...
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 45788999999999999988743211 11357777664 45667777766543
No 377
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=80.44 E-value=0.63 Score=49.84 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|+.|+||||+|+.+..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.17 E-value=0.67 Score=48.21 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=18.1
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47889999999999999876
No 379
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=80.16 E-value=1.4 Score=50.94 Aligned_cols=81 Identities=12% Similarity=0.219 Sum_probs=46.2
Q ss_pred ceeEccCCchHHHHH-HHHHcccchhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCC----HH-
Q 042296 188 AKVYGMGGLGKTTLA-QLVYNDARLQDHFDL-KAWTCVSEDFD-ITRITKSILNSIGTD-------QNVDSLD----FD- 252 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~----~~- 252 (1446)
..|+|..|+|||+|| ..+.+.. .-+. ++++-+++... +.++.+++...=... ...++.. ..
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 241 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPY 241 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHH
T ss_pred EEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHH
Confidence 468999999999996 5777742 2343 46777776643 445555443321000 0001110 11
Q ss_pred ---HHHHHHHHHcCCceEEEEEECC
Q 042296 253 ---KLQVELKKQLSQKKFLLVLDDV 274 (1446)
Q Consensus 253 ---~~~~~l~~~l~~~~~LlVlDdv 274 (1446)
.+.+.++. +++.+||++||+
T Consensus 242 ~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 242 TGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHH--cCCcEEEEEecH
Confidence 22333444 589999999998
No 380
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=80.04 E-value=0.72 Score=47.93 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|+.|+|||||.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999876
No 381
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=79.96 E-value=1.5 Score=50.82 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=47.3
Q ss_pred ceeEccCCchHHHHH-HHHHcccchhccCCc-eEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCCCCHHH----
Q 042296 188 AKVYGMGGLGKTTLA-QLVYNDARLQDHFDL-KAWTCVSEDF-DITRITKSILNSIGT-------DQNVDSLDFDK---- 253 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~---- 253 (1446)
..|+|..|+|||+|| ..+.+.. .-+. ++++-+++.. .+.++.+++...=.. ....++.....
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 253 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPY 253 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 368999999999996 5777632 2443 4677777664 355666666542110 01101111111
Q ss_pred HHHHHHHHc--CCceEEEEEECC
Q 042296 254 LQVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 254 ~~~~l~~~l--~~~~~LlVlDdv 274 (1446)
....+.+++ +++.+||++||+
T Consensus 254 ~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 254 AGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHcCCcEEEEeccH
Confidence 112233333 589999999998
No 382
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.81 E-value=2 Score=47.25 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=31.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFD-LKAWTCVSEDFDITRITKSILNS 239 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 239 (1446)
.+.|+|.+|+|||||++.++... ...-. .++|+.... ...++...+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~--~~~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW--GTAMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH--HHTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH--HHHcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 46799999999999999988632 22212 466665432 344555554443
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.79 E-value=0.69 Score=48.18 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=18.3
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|+.|+||||+|+.+..
T Consensus 8 I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57889999999999999976
No 384
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.73 E-value=0.69 Score=50.45 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.2
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|+|..|+||||||+.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 579999999999999999973
No 385
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=79.62 E-value=2.8 Score=50.69 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=52.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc----
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQL---- 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l---- 262 (1446)
.+.|.|.+|.||||++..+.... ... ...+.+.+.... ..+.+.+.++.. ..+...+.......+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l--~~~-g~~Vl~~ApT~~----Aa~~L~e~~~~~----a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLA--ESL-GLEVGLCAPTGK----AARRLGEVTGRT----ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH--HHT-TCCEEEEESSHH----HHHHHHHHHTSC----EEEHHHHTTEETTEESCSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--Hhc-CCeEEEecCcHH----HHHHhHhhhccc----HHHHHHHHcCCcchhhhhh
Confidence 45789999999999999887632 221 233444443221 222232333211 111111110000000
Q ss_pred --CCceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEc
Q 042296 263 --SQKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTT 302 (1446)
Q Consensus 263 --~~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt 302 (1446)
..+--+||+|.+..-+...+..+...++ .|.++|+.-
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 0123489999997766666777776665 466777654
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=79.58 E-value=0.47 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.6
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999876
No 387
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=79.47 E-value=1.6 Score=44.87 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=24.2
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED 226 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 226 (1446)
+.+.|.||+||||+|..++... ....++ +.++.+...
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q 45 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETH 45 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCT
T ss_pred EEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCC
Confidence 4577999999999998888632 222233 455555443
No 388
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=79.43 E-value=0.54 Score=47.40 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=59.5
Q ss_pred hhhcCceeEEEEeCCCCcc-----ccCccccCCCCCceeeccCcccc-----ccCcccccccccceeeccCccc--cc--
Q 042296 566 RLLKLHRLKVFSLCGYQIS-----ELPNSVGDLRYLRYLNLSRTCIE-----ILPDSINKLYNLHTLLLEDCDR--LK-- 631 (1446)
Q Consensus 566 ~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~--~~-- 631 (1446)
.+..-+.|+.|+|++|.|. .+-..+..=+.|++|+|++|.|. .|-+.+..-+.|++|+|++|.. ++
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 3445678999999999986 23444555578999999999987 2344566667799999986521 22
Q ss_pred ---cccccccCcccceeecccCCC
Q 042296 632 ---KLCADMGNLIKLHHLNNSTTN 652 (1446)
Q Consensus 632 ---~lp~~i~~L~~L~~L~l~~~~ 652 (1446)
.+-..+..-+.|+.|+++.+.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCCC
Confidence 122334444678888887664
No 389
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=79.39 E-value=0.73 Score=48.24 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=18.1
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999876
No 390
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.26 E-value=0.75 Score=47.65 Aligned_cols=21 Identities=29% Similarity=0.318 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999986
No 391
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.14 E-value=0.78 Score=50.39 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.6
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.|+|.+|+||||+++.++.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3678999999999999999986
No 392
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.95 E-value=2.3 Score=58.23 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=60.8
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHH
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV----DSLDFDKLQVELKKQ 261 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~ 261 (1446)
+++.|||+-.+||||||.++.. +.++.=...+||++....|+ ..++.++.+... .+++-++..+..-..
T Consensus 1776 ~~~e~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~-----~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~ 1848 (2050)
T 3cmu_A 1776 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDP-----IYARKLGVDIDNLLCSQPDTGEQALEICDAL 1848 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCH-----HHHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHH--HHhhcCCEEEEEcCccccCH-----HHHHHcCCCHHHeEEecCCcHHHHHHHHHHH
Confidence 4678999999999999999986 45555578899999998887 456778776543 455656665555555
Q ss_pred cC-CceEEEEEECC
Q 042296 262 LS-QKKFLLVLDDV 274 (1446)
Q Consensus 262 l~-~~~~LlVlDdv 274 (1446)
++ +--=+||+|-|
T Consensus 1849 ~~~~~~~~~~~d~~ 1862 (2050)
T 3cmu_A 1849 ARSGAVDVIVVDSV 1862 (2050)
T ss_dssp HHHTCCSEEEESCG
T ss_pred HhcCCCcEEEEcch
Confidence 54 44558999998
No 393
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=78.94 E-value=0.82 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.6
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.|.|..|+|||||++.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4568999999999999999886
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=78.93 E-value=0.77 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|+.|+||||+|+.+..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999864
No 395
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=78.90 E-value=0.65 Score=50.71 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999876
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=78.64 E-value=0.8 Score=49.87 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.0
Q ss_pred ccceeEccCCchHHHHHHHHH
Q 042296 186 NEAKVYGMGGLGKTTLAQLVY 206 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~ 206 (1446)
..++|.|+.|+||||+|+.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999987
No 397
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=78.64 E-value=0.82 Score=48.91 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 568999999999999998874
No 398
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.59 E-value=0.8 Score=48.33 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999986
No 399
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=78.50 E-value=0.81 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999875
No 400
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=78.34 E-value=0.84 Score=50.31 Aligned_cols=74 Identities=15% Similarity=0.054 Sum_probs=39.4
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccC--CceEEEEeCCCCCHHHHHHH--HHHHhcCCCCCCCCCHHHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHF--DLKAWTCVSEDFDITRITKS--ILNSIGTDQNVDSLDFDKLQVELKKQL 262 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~~l~~~l 262 (1446)
.++|.|..|+||||+|+.+..- ..... ..+..+....-+-....... +....+ .....+.+.+...+....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l--l~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g---~P~~~D~~~l~~~L~~L~ 168 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL--LSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKG---FPESYDMPSLLRVLNAIK 168 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTT---SGGGBCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hcccCCCCeEEEEeecccccchhhhhhHHHHhhcc---CcccccHHHHHHHHHhhh
Confidence 5799999999999999988752 22111 12444444332211111111 011111 124566777777776666
Q ss_pred CCc
Q 042296 263 SQK 265 (1446)
Q Consensus 263 ~~~ 265 (1446)
.++
T Consensus 169 ~g~ 171 (321)
T 3tqc_A 169 SGQ 171 (321)
T ss_dssp TTC
T ss_pred ccc
Confidence 555
No 401
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=78.01 E-value=2.1 Score=49.60 Aligned_cols=87 Identities=15% Similarity=0.293 Sum_probs=48.0
Q ss_pred ceeEccCCchHHHHH-HHHHcccch----hccCC-ceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCCHHH
Q 042296 188 AKVYGMGGLGKTTLA-QLVYNDARL----QDHFD-LKAWTCVSEDF-DITRITKSILNSIGTD-------QNVDSLDFDK 253 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~ 253 (1446)
..|+|..|+|||+|| ..+.+.... .++-+ .++++-+++.. .+.++.+++...=... ...++.....
T Consensus 165 ~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 244 (510)
T 2ck3_A 165 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQY 244 (510)
T ss_dssp CEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHH
T ss_pred EEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHH
Confidence 468999999999995 466663321 01244 36777787665 3555666655421100 0101111111
Q ss_pred ----HHHHHHHHc--CCceEEEEEECC
Q 042296 254 ----LQVELKKQL--SQKKFLLVLDDV 274 (1446)
Q Consensus 254 ----~~~~l~~~l--~~~~~LlVlDdv 274 (1446)
....+.+++ +++.+||++||+
T Consensus 245 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 245 LAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 112233333 589999999998
No 402
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=77.92 E-value=0.86 Score=48.01 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 568999999999999999875
No 403
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=77.74 E-value=0.85 Score=47.63 Aligned_cols=21 Identities=29% Similarity=0.350 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999885
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=77.71 E-value=0.88 Score=46.98 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999976
No 405
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=77.66 E-value=0.94 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.8
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..++|+|..|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999986
No 406
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=77.65 E-value=6.9 Score=45.54 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=32.0
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHH
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNS 239 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 239 (1446)
.+.|.|.+|+||||+|..++.+...+ =..++|++.. .+..++...++..
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 45788999999999999988743222 1246666554 3445555555543
No 407
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=77.58 E-value=0.94 Score=46.76 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999875
No 408
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=77.42 E-value=1.1 Score=51.43 Aligned_cols=87 Identities=10% Similarity=0.126 Sum_probs=49.6
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccC--CceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCCH----HH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHF--DLKAWTCVSEDF-DITRITKSILNSIGTD-------QNVDSLDF----DK 253 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----~~ 253 (1446)
.+|.|..|+|||+|+.+++++....+.= +.++++-+++.. .+.++.+++...=... ...++... ..
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~ 234 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPR 234 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999998754332111 345666666554 4566666665431111 00011111 11
Q ss_pred HHHHHHHHc---CCceEEEEEECC
Q 042296 254 LQVELKKQL---SQKKFLLVLDDV 274 (1446)
Q Consensus 254 ~~~~l~~~l---~~~~~LlVlDdv 274 (1446)
....+.+++ +++.+|+++||+
T Consensus 235 ~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 235 MALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCH
Confidence 122233443 379999999997
No 409
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=77.42 E-value=2.2 Score=48.19 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccccccccccceeEccCCchHHHHHHHHHcc
Q 042296 138 DYTIMSKIKEINARFQDIVSQKDLLDFKENSVGRSRKVRQRRETTSLVNEAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 138 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+..+..+|.++..+++.+...+.... . .+ .-..+..++|+|.+|+|||||...+...
T Consensus 146 ~~~~~~~i~~l~~~l~~~~~~r~~~r--------~----~r--~~~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 146 IKFYKRRINKLMKELESIKIFKEKSI--------E----SN--KRNNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------------------------CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------H----hh--hhcCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 44677788888888877755332110 0 00 0112334689999999999999999864
No 410
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.40 E-value=0.9 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|+.|+||||+|+.++.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 578999999999999999886
No 411
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=77.31 E-value=0.94 Score=45.66 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=18.8
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|+|.+|+|||||++.+...
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998863
No 412
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=77.29 E-value=1 Score=44.38 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||.+.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999863
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=77.21 E-value=0.98 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||+|+.+..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999986
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=77.11 E-value=1.5 Score=45.88 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|.|+.|+||||+++.+...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999999873
No 415
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.08 E-value=1.5 Score=46.67 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=25.9
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE 225 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 225 (1446)
.+.|+|.+|+||||+|.+++... ...=..++|++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 45789999999999998887532 12223577777554
No 416
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=77.08 E-value=0.71 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=14.5
Q ss_pred cceeEccCCchHHHHHHHHH-c
Q 042296 187 EAKVYGMGGLGKTTLAQLVY-N 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~-~ 207 (1446)
.++|+|+.|+|||||++.+. .
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp EEEEECSCC----CHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999998 5
No 417
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.00 E-value=5.4 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.4
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.|+|.+|+||||++..++.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999886
No 418
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=76.94 E-value=0.72 Score=49.41 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.++|++|+||||+|+.+..
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999876
No 419
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=76.87 E-value=0.97 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|+|..|+|||||.+.+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5689999999999999998864
No 420
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.86 E-value=0.97 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.3
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.+.|.|++|+||||.|+.++.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999999886
No 421
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=76.50 E-value=0.99 Score=47.59 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999975
No 422
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=76.40 E-value=7.4 Score=44.90 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=47.3
Q ss_pred ceeEccCCchHHHHH-HHHHcccchhccCCc-eEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCCCCHH-----
Q 042296 188 AKVYGMGGLGKTTLA-QLVYNDARLQDHFDL-KAWTCVSEDF-DITRITKSILNSIGTDQ-------NVDSLDFD----- 252 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~----- 252 (1446)
..|.|..|+|||+|| ..+.+. .+-+. ++++-+++.. .+.++.+++.+.=.... ..++....
T Consensus 165 ~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (513)
T 3oaa_A 165 ELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY 240 (513)
T ss_dssp CEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHH
Confidence 468999999999996 566663 22333 5778888765 35566666544211110 00111111
Q ss_pred ---HHHHHHHHHcCCceEEEEEECC
Q 042296 253 ---KLQVELKKQLSQKKFLLVLDDV 274 (1446)
Q Consensus 253 ---~~~~~l~~~l~~~~~LlVlDdv 274 (1446)
.+.+..+. +++.+||++||+
T Consensus 241 ~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 241 AGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHh--cCCCEEEEecCh
Confidence 12233333 689999999998
No 423
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=76.36 E-value=1 Score=49.89 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|..|+|||||++.+..
T Consensus 82 iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 424
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.35 E-value=0.8 Score=47.10 Aligned_cols=21 Identities=33% Similarity=0.137 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999875
No 425
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=76.30 E-value=1 Score=49.41 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+||||+++.++.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999986
No 426
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=76.29 E-value=1.6 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.543 Sum_probs=18.3
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
..|.|.+|+||||++..+...
T Consensus 48 ~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 48 VTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 468899999999999988874
No 427
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=76.23 E-value=1 Score=48.50 Aligned_cols=21 Identities=33% Similarity=0.283 Sum_probs=18.5
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.+.|.||+||||++..++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 457889999999999999985
No 428
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=76.18 E-value=1 Score=48.61 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999999875
No 429
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=76.05 E-value=1 Score=48.31 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999985
No 430
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=75.67 E-value=1.2 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.++|+|..|+|||||.+.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4589999999999999999864
No 431
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.65 E-value=1.9 Score=53.84 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=40.3
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCCceE
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNVDSLDFDKLQVELKKQLSQKKF 267 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 267 (1446)
+-++|++|.|||.+|+++++. ... -++.++ .. +++.... ......+.......-+..++
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e--~~~-----~f~~v~----~~----~l~s~~v------Gese~~vr~lF~~Ar~~~P~ 572 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----GP----ELLTMWF------GESEANVREIFDKARQAAPC 572 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHT--TTC-----EEEECC----HH----HHHTTTC------SSCHHHHHHHHHHHHTTCSE
T ss_pred EEEecCCCCCchHHHHHHHHH--hCC-----ceEEec----cc----hhhcccc------chHHHHHHHHHHHHHHcCCc
Confidence 458899999999999999983 332 233433 11 2222211 12233333333333356789
Q ss_pred EEEEECCCC
Q 042296 268 LLVLDDVWN 276 (1446)
Q Consensus 268 LlVlDdv~~ 276 (1446)
.|++|+++.
T Consensus 573 IifiDEiDs 581 (806)
T 3cf2_A 573 VLFFDELDS 581 (806)
T ss_dssp EEECSCGGG
T ss_pred eeechhhhH
Confidence 999999853
No 432
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=75.62 E-value=1.1 Score=48.27 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 568999999999999999986
No 433
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=75.52 E-value=1.1 Score=48.03 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 568999999999999999885
No 434
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=75.39 E-value=1.1 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||+..+...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999998863
No 435
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=75.32 E-value=1.2 Score=43.46 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999998764
No 436
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.24 E-value=1.1 Score=47.31 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 568999999999999999986
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.09 E-value=1.2 Score=45.69 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=17.8
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|.|++|+||+|.|+.++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999886
No 438
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=75.09 E-value=3.1 Score=42.82 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.+-|+.|+||||+++.+...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3567899999999999999873
No 439
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=75.09 E-value=0.91 Score=50.31 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.3
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.++|+.|+||||+|+.++.
T Consensus 27 i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57899999999999999887
No 440
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=75.05 E-value=1.2 Score=47.40 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 568999999999999999987
No 441
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=75.01 E-value=1.1 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||+|+.++.
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999986
No 442
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=74.98 E-value=1.2 Score=46.82 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 568999999999999999985
No 443
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=74.96 E-value=1.1 Score=47.83 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 568999999999999999975
No 444
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=74.83 E-value=1.2 Score=47.38 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999875
No 445
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=74.77 E-value=1.6 Score=44.48 Aligned_cols=108 Identities=11% Similarity=-0.002 Sum_probs=49.7
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHcCCce
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDITRITKSILNSIGTDQNV-DSLDFDKLQVELKKQLSQKK 266 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~ 266 (1446)
..++|.-|.||||.|...... ...+-..++.+.-... .+.-...+...++..... ...+.+ .+.+.+.++-
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r--~~~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~~~~ 102 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRR--TQFAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHITEEM 102 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGCCSSC
T ss_pred EEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHHhcCC
Confidence 358899999999998887763 3333233444442221 111122344444332210 111111 2333333333
Q ss_pred EEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChH
Q 042296 267 FLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQA 306 (1446)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 306 (1446)
-+|++|.+.--+.+.++. ...+.+ .|-.||+|-++.+
T Consensus 103 dvViIDEaQF~~~~~V~~-l~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 103 DVIAIDEVQFFDGDIVEV-VQVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CEEEECCGGGSCTTHHHH-HHHHHH--TTCEEEEEECSBC
T ss_pred CEEEEECcccCCHHHHHH-HHHHhh--CCCEEEEEecccc
Confidence 499999985533233433 333222 3778999998754
No 446
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=74.75 E-value=1.2 Score=43.52 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.6
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.++|.+|+|||||+..+...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999999764
No 447
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=74.74 E-value=1.2 Score=47.83 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 568999999999999999987
No 448
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=74.59 E-value=1.8 Score=47.88 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=19.4
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.|+|.+|+||||++..++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998886
No 449
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.44 E-value=1.2 Score=47.48 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999975
No 450
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.33 E-value=1.2 Score=47.22 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999975
No 451
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=74.32 E-value=2.6 Score=49.33 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=31.1
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCC-CHHHHHHH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDF-DITRITKS 235 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~ 235 (1446)
.+|.|..|+|||+|+.++.+.. +-+.++++-+++.. .+.++.++
T Consensus 235 ~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 235 AAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred EeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 3689999999999999998742 33567777777653 34444444
No 452
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.12 E-value=1.3 Score=48.34 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|.+|+||||||..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999999885
No 453
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=74.01 E-value=1.4 Score=44.51 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.++|.+|+|||||...+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999864
No 454
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.01 E-value=1.7 Score=46.47 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=51.8
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCC-CCCHHHHHHHHHH--HhcCCCCCCCCCHHHHHHHHHHHcC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSE-DFDITRITKSILN--SIGTDQNVDSLDFDKLQVELKKQLS 263 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~l~~~l~ 263 (1446)
.+.|+|..|+||||+++.+..- +...+.+.+++.-.. .+-.... ..+.. +++. ... .....+...+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----~~~---~l~~~la~aL~ 96 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DTK---SFADALRAALR 96 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TBS---CHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC----CHH---HHHHHHHHHHh
Confidence 4689999999999999998762 222223333332110 0000000 00000 0000 111 22445555555
Q ss_pred CceEEEEEECCCCCChhhHHHhcccccCCCCCcEEEEEccChHH
Q 042296 264 QKKFLLVLDDVWNENYNDWIDLSRPFEAGAPGSKIVVTTRNQAV 307 (1446)
Q Consensus 264 ~~~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v 307 (1446)
.++=+|++|..-|. .......... ..|.-|++||-+.++
T Consensus 97 ~~p~illlDEp~D~--~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMRDL--ETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCCCH--HHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 56668888988532 3322222221 246678888876543
No 455
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=74.01 E-value=1.2 Score=47.58 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999986
No 456
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=73.96 E-value=1.3 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 468999999999999999986
No 457
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=73.85 E-value=1.3 Score=47.86 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.++.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999975
No 458
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=73.74 E-value=1.3 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.6
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999886
No 459
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=73.74 E-value=1.4 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999864
No 460
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=73.60 E-value=1.4 Score=48.56 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+||||||..++.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999987
No 461
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=73.56 E-value=1.4 Score=43.32 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3578999999999999998764
No 462
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.55 E-value=1.4 Score=48.15 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 568999999999999999875
No 463
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=73.42 E-value=1.3 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||+..+...
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999998863
No 464
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=73.40 E-value=1.3 Score=47.91 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 468999999999999999986
No 465
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=73.24 E-value=1.3 Score=47.08 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999985
No 466
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=73.23 E-value=1.3 Score=47.57 Aligned_cols=21 Identities=43% Similarity=0.420 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||.+.++.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 568999999999999999875
No 467
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=73.12 E-value=1.5 Score=43.41 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||...+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4579999999999999998764
No 468
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=72.97 E-value=1.4 Score=47.40 Aligned_cols=20 Identities=40% Similarity=0.695 Sum_probs=18.4
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
++|+|..|+|||||.+.++.
T Consensus 5 v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999986
No 469
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=72.96 E-value=1.5 Score=45.49 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=18.2
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+|.|++|+||||+|+.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHH
Confidence 48999999999999999876
No 470
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=72.71 E-value=1.4 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|..|+||||+++.++.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 568999999999999999986
No 471
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=72.55 E-value=1.4 Score=47.73 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||||..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 467899999999999999986
No 472
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=72.47 E-value=1.6 Score=43.38 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.4
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||...+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999864
No 473
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=72.23 E-value=2.8 Score=43.60 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=16.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|-|+.|+||||+++.+++.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999873
No 474
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=72.03 E-value=2.8 Score=46.38 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=26.0
Q ss_pred ccceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCC
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSED 226 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 226 (1446)
+.+.|+|-||+||||+|..++.. ....=..++-|+....
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~ 80 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPK 80 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSS
T ss_pred eEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCC
Confidence 45677799999999999888763 2222224566666543
No 475
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=72.02 E-value=1.6 Score=42.80 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||...+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999998764
No 476
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=71.79 E-value=3 Score=44.48 Aligned_cols=40 Identities=28% Similarity=0.228 Sum_probs=26.4
Q ss_pred ceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCCH
Q 042296 188 AKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFDI 229 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 229 (1446)
+.|.|-||+||||+|..++... ...=..++-|+.....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM--ASDYDKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH--TTTCSCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCcCh
Confidence 4568999999999999888632 222234666776554443
No 477
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=71.72 E-value=1.6 Score=44.21 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||...+...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999998764
No 478
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=71.67 E-value=1.4 Score=48.20 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|+|..|+|||||++.+..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 568999999999999999874
No 479
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=71.62 E-value=1.7 Score=42.77 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=17.8
Q ss_pred ceeEccCCchHHHHHHHHHc
Q 042296 188 AKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~ 207 (1446)
+.|+|.+|+|||||+..+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999864
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=71.60 E-value=1.6 Score=43.78 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=18.6
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|..|+||||||.++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999986
No 481
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=71.51 E-value=1.7 Score=42.84 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=18.7
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|+|.+|+|||||...+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999999864
No 482
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=71.49 E-value=1.6 Score=43.79 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||+..+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999998764
No 483
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=71.45 E-value=1.6 Score=42.91 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.3
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|+|.+|+|||||...+.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 578999999999999988653
No 484
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=71.31 E-value=3.8 Score=42.85 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|.|..|+||||+++.+...
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999874
No 485
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=71.24 E-value=1.5 Score=49.95 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=18.9
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+-++|.+|+|||++|+.+++
T Consensus 53 ~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999987
No 486
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=71.23 E-value=1.7 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|+.|+||||+|+.+..
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 487
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=71.20 E-value=2 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4579999999999999998864
No 488
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=71.11 E-value=1.7 Score=43.71 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.7
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999887654
No 489
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=71.06 E-value=0.85 Score=49.83 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.++|.|..|+||||+|+.+..
T Consensus 7 iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 490
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=70.94 E-value=1.8 Score=42.53 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.6
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|+|.+|+|||||...+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999998764
No 491
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=70.90 E-value=2.1 Score=42.49 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.3
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||...+...
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998764
No 492
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=70.89 E-value=1.6 Score=50.11 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=18.8
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+-++|.+|+|||++|+.+++
T Consensus 74 ~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999987
No 493
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=70.77 E-value=1.7 Score=49.15 Aligned_cols=21 Identities=33% Similarity=0.158 Sum_probs=19.2
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|+|+.|+|||||++.++.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 568999999999999999986
No 494
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=70.74 E-value=1.8 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.3
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..+.|+|++|+||||+|+.+..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3567889999999999999886
No 495
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=70.73 E-value=1.7 Score=46.60 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred ccceeEccCCchHHHHHHHHHc
Q 042296 186 NEAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 186 ~~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
..++|+|..|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999999886
No 496
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=70.72 E-value=1.7 Score=50.58 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=27.1
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeCCCCC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVSEDFD 228 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 228 (1446)
.++|+|..|+|||||++.++.. .+. -.+.+++...+.+.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred EEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 5689999999999999999863 222 23455655444444
No 497
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=70.72 E-value=3.1 Score=44.87 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=24.3
Q ss_pred cceeEccCCchHHHHHHHHHcccchhccCCceEEEEeC
Q 042296 187 EAKVYGMGGLGKTTLAQLVYNDARLQDHFDLKAWTCVS 224 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 224 (1446)
.+.|.|-||+||||+|..++.. ....=..+.-|+..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D 38 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCC
Confidence 4566799999999999888763 22222245666654
No 498
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.70 E-value=1.7 Score=47.14 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=19.0
Q ss_pred cceeEccCCchHHHHHHHHHc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYN 207 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~ 207 (1446)
.+.|.|+.|+||||||..++.
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 567899999999999999986
No 499
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.63 E-value=1.8 Score=42.56 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.5
Q ss_pred ceeEccCCchHHHHHHHHHcc
Q 042296 188 AKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 188 ~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
+.|+|.+|+|||||...+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999998754
No 500
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=70.56 E-value=1.8 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.1
Q ss_pred cceeEccCCchHHHHHHHHHcc
Q 042296 187 EAKVYGMGGLGKTTLAQLVYND 208 (1446)
Q Consensus 187 ~~~i~G~gG~GKTtLa~~v~~~ 208 (1446)
.+.|+|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3578999999999999998764
Done!