BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042298
         (186 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q75JB5|U136_DICDI UPF0136 membrane protein OS=Dictyostelium discoideum
           GN=DDB_G0271790 PE=3 SV=1
          Length = 112

 Score = 34.7 bits (78), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 85  SAAYGILLLLGGLFAFAKSASKGSLFGG-LTGAALMASAFFLMQSPDTKAIGDALGFGSA 143
           +AA   ++L GG+  +AKS S  SL  G + G     SA++L Q          +G G +
Sbjct: 12  NAAMAAIVLSGGVIGYAKSKSMPSLIAGSVFGLLYSTSAYYLSQG------NSKVGLGVS 65

Query: 144 FLFSS----VFGIRLVATQRPIP 162
            L SS    V G + +AT +PIP
Sbjct: 66  VLASSLLGGVMGKKAIATSKPIP 88


>sp|O64847|U136_ARATH UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana
           GN=At2g26240 PE=3 SV=1
          Length = 108

 Score = 33.5 bits (75), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 78  ADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDA 137
           + L+   + AY  LL +GGL  + K  SK SL  G   AAL    +   + P    +  +
Sbjct: 3   SSLSQKFTLAYASLLGVGGLMGYLKRGSKISLVAGGGSAALF--YYVYTELPGNPVLASS 60

Query: 138 LGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQ 183
           +G   +   + + G R + T++ +PA    GL +    V   AYL 
Sbjct: 61  IGIVGSAALTGMMGSRYLRTRKVVPA----GLVSVVSLVMTGAYLH 102


>sp|O61365|NACH_DROME Sodium channel protein Nach OS=Drosophila melanogaster GN=Nach PE=2
           SV=2
          Length = 535

 Score = 33.1 bits (74), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 27  NKNNNVKREDDTRVTSLSFGISEAAGGLRNGKCNFSPRPRPLLCRISQLEVADLAPSTSA 86
           NK NN++      + SL+F    A GGLR G           L  + + +  +  P  S 
Sbjct: 222 NKLNNLESFKVFHLNSLNFTAQRAIGGLRYG-----------LSVVVRYKDDNYDPLQSY 270

Query: 87  AYGILLLLGGLFAF--AKSASKGSLFGGLTGAAL 118
           +YG+ LL+    AF  A SA+K   F   T AA+
Sbjct: 271 SYGVKLLIQEADAFPSAHSAAKFIAFNSETFAAV 304


>sp|Q9P7G3|YK45_SCHPO UPF0136 membrane protein P14E8.05c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAP14E8.05c PE=3 SV=1
          Length = 101

 Score = 32.0 bits (71), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 91  LLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVF 150
           LL +GGL  + +  SK SL  G    A  A A  LM+   ++ I  A  +GS  L +S  
Sbjct: 13  LLTVGGLIGYLRKKSKVSLIAGTALGANFAWASKLMERGSSQGINYAF-YGSLVLLASS- 70

Query: 151 GIRLVATQRPIP 162
           G R   +++P+P
Sbjct: 71  GPRFYKSRKPVP 82


>sp|Q9FLT3|GL34_ARATH Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana
           GN=At5g61750 PE=2 SV=1
          Length = 210

 Score = 31.2 bits (69), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 13/132 (9%)

Query: 17  ERTKLSATTLNKNNNVKREDDTRVTSLSF------GISEAAGGL-RNGKCNFSPRPR--P 67
           + TKL  T     +N  + + T +T+L F      G+S +   L R+G   F   PR   
Sbjct: 56  KSTKL--TEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSE 113

Query: 68  LLCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQ 127
           +L  +  +  A    + +  +  +L  G +F F K      L GG   A   A +F+  Q
Sbjct: 114 MLFVVKGVVFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPAT--AFSFYNSQ 171

Query: 128 SPDTKAIGDALG 139
           +P    IG+  G
Sbjct: 172 NPGVVNIGEVFG 183


>sp|A1S6N2|RNFD_SHEAM Electron transport complex protein RnfD OS=Shewanella amazonensis
           (strain ATCC BAA-1098 / SB2B) GN=rnfD PE=3 SV=1
          Length = 348

 Score = 30.8 bits (68), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 93  LLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKA 133
           L GGLF  A    +  + GGL GA  + S F    SPDT A
Sbjct: 223 LCGGLFLLATKTIRWHISGGLIGALFVCSLFGFGASPDTHA 263


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,776,038
Number of Sequences: 539616
Number of extensions: 2203136
Number of successful extensions: 5001
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4997
Number of HSP's gapped (non-prelim): 21
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)