Query 042298
Match_columns 186
No_of_seqs 116 out of 309
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4267 Predicted membrane pro 99.9 4.4E-25 9.5E-30 171.9 9.2 95 82-180 4-100 (110)
2 PF03647 Tmemb_14: Transmembra 99.9 3E-25 6.5E-30 167.2 4.6 91 84-176 3-93 (96)
3 COG5548 Small integral membran 99.8 2E-21 4.3E-26 149.3 7.5 98 83-184 5-103 (105)
4 PF04156 IncA: IncA protein; 79.0 5.3 0.00012 32.3 5.4 27 79-105 5-31 (191)
5 PF06570 DUF1129: Protein of u 61.3 95 0.0021 25.8 10.3 93 83-175 85-192 (206)
6 PF03302 VSP: Giardia variant- 57.1 3.2 6.9E-05 38.4 -0.3 22 80-101 366-387 (397)
7 COG5336 Uncharacterized protei 46.0 69 0.0015 25.8 5.6 43 109-153 52-94 (116)
8 PRK12874 ubiA prenyltransferas 45.1 2.2E+02 0.0048 25.2 11.7 70 85-160 96-165 (291)
9 COG4858 Uncharacterized membra 43.7 2.3E+02 0.0051 25.1 11.4 95 85-179 102-212 (226)
10 PRK13106 ubiA prenyltransferas 39.6 2.8E+02 0.0061 24.8 11.3 19 82-100 95-113 (300)
11 PF10315 DUF2416: Protein of u 39.3 43 0.00094 26.5 3.6 89 82-174 7-100 (108)
12 PF11712 Vma12: Endoplasmic re 39.2 1.2E+02 0.0026 23.9 6.2 9 176-184 129-137 (142)
13 PF12751 Vac7: Vacuolar segreg 38.3 43 0.00093 31.8 4.0 28 80-107 302-329 (387)
14 PF10101 DUF2339: Predicted me 36.4 2.6E+02 0.0057 27.0 9.1 94 89-186 11-114 (745)
15 COG3180 AbrB Putative ammonia 35.5 3.3E+02 0.0072 25.6 9.3 85 85-174 190-279 (352)
16 PRK12599 putative monovalent c 31.5 2.3E+02 0.0049 21.3 8.1 70 115-185 16-87 (91)
17 PF09586 YfhO: Bacterial membr 31.0 2.6E+02 0.0057 27.5 8.2 58 110-171 121-179 (843)
18 PF11351 DUF3154: Protein of u 30.6 1.8E+02 0.0039 22.8 5.8 25 161-185 95-119 (123)
19 PF03818 MadM: Malonate/sodium 29.1 1.1E+02 0.0024 22.1 3.9 42 108-149 12-55 (60)
20 COG4244 Predicted membrane pro 28.9 3.6E+02 0.0077 22.8 7.8 42 134-175 88-133 (160)
21 COG4956 Integral membrane prot 28.8 4E+02 0.0086 25.3 8.5 32 91-122 25-58 (356)
22 PF10131 PTPS_related: 6-pyruv 27.3 6.2E+02 0.013 25.0 10.3 71 88-159 30-101 (616)
23 PF11833 DUF3353: Protein of u 27.3 3.9E+02 0.0084 22.7 7.7 21 90-110 100-120 (194)
24 PF07331 TctB: Tripartite tric 25.0 3E+02 0.0066 20.7 9.4 44 138-181 92-135 (141)
25 TIGR01474 ubiA_proteo 4-hydrox 24.4 4.7E+02 0.01 22.7 11.6 24 140-164 139-162 (281)
26 PF11127 DUF2892: Protein of u 23.8 2.4E+02 0.0052 19.1 5.2 43 78-123 6-48 (66)
27 PRK12603 putative monovalent c 23.3 3.3E+02 0.0072 20.5 8.3 72 113-185 9-83 (86)
28 PF06532 DUF1109: Protein of u 23.2 3.1E+02 0.0068 23.0 6.4 67 89-156 128-203 (204)
29 TIGR01475 ubiA_other putative 23.2 4.9E+02 0.011 22.4 11.2 23 81-103 81-103 (282)
30 PF09925 DUF2157: Predicted me 21.9 3.9E+02 0.0085 20.8 8.3 20 82-101 33-52 (145)
31 COG3448 CBS-domain-containing 21.4 2.4E+02 0.0052 26.8 5.7 12 92-103 40-51 (382)
32 PF11947 DUF3464: Protein of u 20.6 2.2E+02 0.0047 23.8 4.8 61 78-138 63-132 (153)
No 1
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=99.92 E-value=4.4e-25 Score=171.92 Aligned_cols=95 Identities=26% Similarity=0.406 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHh-cCCCCchhhHHHHHH-HHHHHHHHHHHHHHhcCC
Q 042298 82 PSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLM-QSPDTKAIGDALGFG-SAFLFSSVFGIRLVATQR 159 (186)
Q Consensus 82 ~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll-~~~~~~~~G~~Lal~-iS~vL~~vmg~R~~kTrK 159 (186)
..++++|++|+.+||+|||.|+||+|||++|+..+++++.+++.+ +++ +.+..+++. +|++|+.+|++||.+|||
T Consensus 4 ~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l~g~~s~~l~~~~---~~~~~~~l~~~s~~L~gvmg~R~~~s~K 80 (110)
T KOG4267|consen 4 DCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGALAGYGSYLLSRDK---KGGSLVALGGTSAALLGVMGQRFYRSRK 80 (110)
T ss_pred hhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHHHHHHHHHhhcCC---CcCchhHHHHHHHHHHHHHhhhhhccCC
Confidence 368999999999999999999999999999986667777666666 443 334566677 799999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 042298 160 PIPAGPLLGLSTCALAVFISA 180 (186)
Q Consensus 160 ~MPAGLvaiLSl~ml~~fy~~ 180 (186)
+||+|+++.+|++|+ +||.+
T Consensus 81 ~mPaglva~~s~~m~-~~Y~y 100 (110)
T KOG4267|consen 81 IMPAGLVAGISLLMT-CFYLY 100 (110)
T ss_pred ccchHHHHHHHHHHH-HHHHH
Confidence 999999999999999 55544
No 2
>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised.; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.
Probab=99.91 E-value=3e-25 Score=167.23 Aligned_cols=91 Identities=32% Similarity=0.495 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCcch
Q 042298 84 TSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPA 163 (186)
Q Consensus 84 ~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~MPA 163 (186)
++++|++++++||++||+|+||+|||++|+..++++..+.++.+ +++++++.+++++|++|+.+|++||.||+|+||+
T Consensus 3 ~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~--~~~~~~~~~~l~~s~~L~~~m~~R~~~t~k~~Pa 80 (96)
T PF03647_consen 3 LAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL--TNQKWGSELALAISAVLAGVMGYRYIKTRKFMPA 80 (96)
T ss_dssp HCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS---STHHCCHHHHHHHHHHHHCCTSSS-SSSSSCCC
T ss_pred hhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh--ccCCccHHHHHHHHHHHHHHHHHHHHHcCCCccH
Confidence 56899999999999999999999999999755555555555444 2247899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 042298 164 GPLLGLSTCALAV 176 (186)
Q Consensus 164 GLvaiLSl~ml~~ 176 (186)
|+++++|.+|+++
T Consensus 81 gl~~~~s~~~~~~ 93 (96)
T PF03647_consen 81 GLMALLSGAMLAF 93 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999943
No 3
>COG5548 Small integral membrane protein [Function unknown]
Probab=99.85 E-value=2e-21 Score=149.30 Aligned_cols=98 Identities=23% Similarity=0.373 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 042298 83 STSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMA-SAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPI 161 (186)
Q Consensus 83 ~~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~-~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~M 161 (186)
-.+++|+.|..+||+|||.||+|++||++|++.|++++ ++|++++++ ++|+++++..|++|.++++.|+++|||||
T Consensus 5 ~~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~g~---~~Gl~~A~~~s~~Ll~~~~~R~~~sRKpv 81 (105)
T COG5548 5 TAAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQGQ---TWGLILATVVSAALLVFFALRLVRSRKPV 81 (105)
T ss_pred hHHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHcCc---ccCeehHHHHHHHHHHhcchhccccCCCc
Confidence 35788999999999999999999999999987666666 555555665 68999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhcc
Q 042298 162 PAGPLLGLSTCALAVFISAYLQD 184 (186)
Q Consensus 162 PAGLvaiLSl~ml~~fy~~ylq~ 184 (186)
|+++++ ++.....+||..|.+.
T Consensus 82 P~~Lt~-lgg~~s~y~y~~~~~~ 103 (105)
T COG5548 82 PAGLTT-LGGMLSLYVYVNQMVA 103 (105)
T ss_pred chHHHH-Hhhhhhhhheeeeecc
Confidence 999988 5555555888877654
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.96 E-value=5.3 Score=32.27 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhcCC
Q 042298 79 DLAPSTSAAYGILLLLGGLFAFAKSAS 105 (186)
Q Consensus 79 ~~~~~~g~~Yg~LlavGGi~GYvKkGS 105 (186)
-+..++.++.|++++++|+.+-+-.++
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv~~~~ 31 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALVLFIS 31 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678888899999999999777665
No 5
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=61.33 E-value=95 Score=25.83 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhcCC-----hhHhH-HHHHHHHHHHHHHHHhcC---CCCc-hhhHHHHHH---HHHHHHHH
Q 042298 83 STSAAYGILLLLGGLFAFAKSAS-----KGSLF-GGLTGAALMASAFFLMQS---PDTK-AIGDALGFG---SAFLFSSV 149 (186)
Q Consensus 83 ~~g~~Yg~LlavGGi~GYvKkGS-----~pSLi-aGl~ggaLl~~g~~ll~~---~~~~-~~G~~Lal~---iS~vL~~v 149 (186)
..-+.++++..+=|++++...++ ..+|+ .++.+|+++..-+..++. .+++ .++..+... ..+.+.++
T Consensus 85 ~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~~w~~~~ 164 (206)
T PF06570_consen 85 NSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMVLWIVIF 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778889999877633 23443 344555554433333332 1111 233322111 22223344
Q ss_pred HHHHHHhcC--CCcchhHHHHHHHHHHH
Q 042298 150 FGIRLVATQ--RPIPAGPLLGLSTCALA 175 (186)
Q Consensus 150 mg~R~~kTr--K~MPAGLvaiLSl~ml~ 175 (186)
+...+.... -.+|.-...+++++..+
T Consensus 165 ~~~~~lp~~inp~l~~~~~iiig~i~~~ 192 (206)
T PF06570_consen 165 VLTSFLPPVINPVLPPWVYIIIGVIAFA 192 (206)
T ss_pred HHHHHccccCCcCCCHHHHHHHHHHHHH
Confidence 444444332 24566556666665553
No 6
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=57.08 E-value=3.2 Score=38.41 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHhhhhhhhh
Q 042298 80 LAPSTSAAYGILLLLGGLFAFA 101 (186)
Q Consensus 80 ~~~~~g~~Yg~LlavGGi~GYv 101 (186)
-+.|++|..++++.+||++||+
T Consensus 366 tgaIaGIsvavvvvVgglvGfL 387 (397)
T PF03302_consen 366 TGAIAGISVAVVVVVGGLVGFL 387 (397)
T ss_pred ccceeeeeehhHHHHHHHHHHH
Confidence 3567889999999999999997
No 7
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.98 E-value=69 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHH
Q 042298 109 LFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIR 153 (186)
Q Consensus 109 LiaGl~ggaLl~~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R 153 (186)
||+|+..|++ .||++-+--.++.||.++-+.+-+...+....|
T Consensus 52 fIsGilVGa~--iG~llD~~agTsPwglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 52 FISGILVGAG--IGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHH--HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3677655554 566665655666677775555544444444444
No 8
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=45.05 E-value=2.2e+02 Score=25.17 Aligned_cols=70 Identities=7% Similarity=-0.034 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 042298 85 SAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRP 160 (186)
Q Consensus 85 g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~ 160 (186)
++.+++++.+.|++.-..-+....+++ .++..+...|-.+|+. ..+++. -.+++..+..++|.=+. ++.+
T Consensus 96 a~~~~~~~~~~~~~~~~~~n~~~~~l~--~~~~~~~~~Y~~~KR~--t~~~~~-~~g~~~~~~~l~G~~av-~g~~ 165 (291)
T PRK12874 96 MVLFIVLNALIFIGVSYFINPLAFKLS--FPFLIVLGGYSYFKRF--SSLAHL-VLGLSLGLAPIAGVVAV-LGEI 165 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHhhhccc--ccccHH-HHHHHHHHHHHHHHHHH-cCCC
Confidence 444454444444443322322222222 2333334445444543 224443 34555666777776665 5554
No 9
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=43.71 E-value=2.3e+02 Score=25.08 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhhhhhhhhcCC----hhHh-HHHHHHHHHHHHHHHHh---cC-CCCc-hhhHHHHHHHHHHHHHHHHH--
Q 042298 85 SAAYGILLLLGGLFAFAKSAS----KGSL-FGGLTGAALMASAFFLM---QS-PDTK-AIGDALGFGSAFLFSSVFGI-- 152 (186)
Q Consensus 85 g~~Yg~LlavGGi~GYvKkGS----~pSL-iaGl~ggaLl~~g~~ll---~~-~~~~-~~G~~Lal~iS~vL~~vmg~-- 152 (186)
-+..|++.++-|+..|..+.- ..+| +.|+.||+.+..-|+.. +. +.++ .++-.+...+...+.|....
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~ 181 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIA 181 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 345588888999999998873 2344 36666666655544433 22 1111 13334444444455554444
Q ss_pred -HHHhc--CCCcchhHHHHHHHHHHH-HHHH
Q 042298 153 -RLVAT--QRPIPAGPLLGLSTCALA-VFIS 179 (186)
Q Consensus 153 -R~~kT--rK~MPAGLvaiLSl~ml~-~fy~ 179 (186)
-+..+ .--.|+-..++++++.++ .||.
T Consensus 182 t~~lPtslN~~L~pi~l~IiGav~lalRfyl 212 (226)
T COG4858 182 TVFLPTSLNPQLPPIALTIIGAVILALRFYL 212 (226)
T ss_pred HhhCCCcCCcCCchHHHHHHHHHHHHHHHHH
Confidence 23333 223344444555554443 4443
No 10
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=39.58 E-value=2.8e+02 Score=24.81 Aligned_cols=19 Identities=16% Similarity=-0.214 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHhhhhhhh
Q 042298 82 PSTSAAYGILLLLGGLFAF 100 (186)
Q Consensus 82 ~~~g~~Yg~LlavGGi~GY 100 (186)
+.-++.+.++..+++++..
T Consensus 95 ~~~A~~~~~~~~~~~~~~~ 113 (300)
T PRK13106 95 ISEAKALITAGLILFFASA 113 (300)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455555555444443
No 11
>PF10315 DUF2416: Protein of unknown function (DUF2416); InterPro: IPR019419 This entry represents conserved proteins with unknown function and is restricted to fungi.
Probab=39.28 E-value=43 Score=26.54 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcCChhHhHHH-HHHHHHHHHHHHHhc-CCCCchhhHHHHHHHHHHHHHHHHHHHHhcC-
Q 042298 82 PSTSAAYGILLLLGGLFAFAKSASKGSLFGG-LTGAALMASAFFLMQ-SPDTKAIGDALGFGSAFLFSSVFGIRLVATQ- 158 (186)
Q Consensus 82 ~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaG-l~ggaLl~~g~~ll~-~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTr- 158 (186)
|+..++.+..++.=+...--.+.-.|+=-.- +++++....+|.... ++++ |--...+=|.+-..+.+.|-+|+.
T Consensus 7 P~pa~~~s~~ll~~~~~~~~~~~~~Pt~~~~llFg~a~~lg~ymi~dGD~~N---GsGf~~AWS~lYLivngr~siksl~ 83 (108)
T PF10315_consen 7 PYPAWAFSGSLLAKGPTSSRPRYIGPTRKSCLLFGAAFALGGYMIYDGDLEN---GSGFVTAWSTLYLIVNGRKSIKSLR 83 (108)
T ss_pred CcCHHHhcccHHhhcccccCCCccCCchhHhHHHHHHHHhhhheeecCCccc---cchHHHHHHHHHHHHcChhhhHHhc
Confidence 3344444444444333333333333333233 355555444444443 3332 233345667778888888888885
Q ss_pred --CCcchhHHHHHHHHHH
Q 042298 159 --RPIPAGPLLGLSTCAL 174 (186)
Q Consensus 159 --K~MPAGLvaiLSl~ml 174 (186)
|+.|.++.. +++.-.
T Consensus 84 ~gr~~PL~Ls~-~a~~na 100 (108)
T PF10315_consen 84 RGRVWPLALSG-LALGNA 100 (108)
T ss_pred cCCchHHHHHH-HHHhch
Confidence 899987654 555444
No 12
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=39.23 E-value=1.2e+02 Score=23.92 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=5.6
Q ss_pred HHHHHHhcc
Q 042298 176 VFISAYLQD 184 (186)
Q Consensus 176 ~fy~~ylq~ 184 (186)
++|..|+++
T Consensus 129 ~l~~~y~~k 137 (142)
T PF11712_consen 129 VLYIRYLRK 137 (142)
T ss_pred HHHHHHHhh
Confidence 666666654
No 13
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=38.35 E-value=43 Score=31.83 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhcCChh
Q 042298 80 LAPSTSAAYGILLLLGGLFAFAKSASKG 107 (186)
Q Consensus 80 ~~~~~g~~Yg~LlavGGi~GYvKkGS~p 107 (186)
++.-+.+.+-+||.+||++||+.+-++|
T Consensus 302 ~~~c~~~~i~~lL~ig~~~gFv~AttKp 329 (387)
T PF12751_consen 302 FASCIYLSILLLLVIGFAIGFVFATTKP 329 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 3444444555689999999999887765
No 14
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=36.43 E-value=2.6e+02 Score=27.04 Aligned_cols=94 Identities=27% Similarity=0.257 Sum_probs=48.5
Q ss_pred HHHHHhhhhhhhhhcCC--h--hHh--HHH-HHHHHHHHHHHHHhcCCCCchhhHHHHH-HHH-HHHHHHHHHHHHhcCC
Q 042298 89 GILLLLGGLFAFAKSAS--K--GSL--FGG-LTGAALMASAFFLMQSPDTKAIGDALGF-GSA-FLFSSVFGIRLVATQR 159 (186)
Q Consensus 89 g~LlavGGi~GYvKkGS--~--pSL--iaG-l~ggaLl~~g~~ll~~~~~~~~G~~Lal-~iS-~vL~~vmg~R~~kTrK 159 (186)
++.+.+|+++-..-+-+ - |.. ..| +.|.++.+.|..+.+++ .+..+..++- +++ .-++......++ .
T Consensus 11 ~~~l~lG~~fl~kya~~~g~l~p~~Rv~~g~~~g~~l~~~g~~l~~k~-~~~~~~~L~g~G~a~ly~t~~aa~~~y---~ 86 (745)
T PF10101_consen 11 ILVLLLGVVFLLKYAIDAGWLGPAVRVALGAALGLALLAAGERLRRKG-YRAFAQALAGGGIAVLYLTVFAAYHLY---G 86 (745)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 55666666665322222 1 222 344 58888888888777542 1345555432 233 234445555554 4
Q ss_pred CcchhHHHHHHHH-HHHHHHHHHhccCC
Q 042298 160 PIPAGPLLGLSTC-ALAVFISAYLQDSP 186 (186)
Q Consensus 160 ~MPAGLvaiLSl~-ml~~fy~~ylq~~~ 186 (186)
++|.++-.++..+ .....+..+.||+|
T Consensus 87 l~~~~~af~~~~~v~~~~~~la~r~~~~ 114 (745)
T PF10101_consen 87 LIPPPVAFALLALVTAAAVALALRYDSP 114 (745)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 5666554433333 33366677777764
No 15
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=35.49 E-value=3.3e+02 Score=25.58 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhc-----CC
Q 042298 85 SAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVAT-----QR 159 (186)
Q Consensus 85 g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kT-----rK 159 (186)
.....+...++|+.|+.-+=--|.+.+.+..++..=.+.. ++ .++...+....-.++.+..|.|+.++ +|
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~-~~----~~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r 264 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGG-IT----IQLPAWLLAVAQALIGALIGSRFDRSILREAKR 264 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccc-ee----eeCCHHHHHHHHHHHHHHHcccccHHHHHHhHh
Confidence 4445666778899999888777777776544333222221 11 11222233344567888889998887 78
Q ss_pred CcchhHHHHHHHHHH
Q 042298 160 PIPAGPLLGLSTCAL 174 (186)
Q Consensus 160 ~MPAGLvaiLSl~ml 174 (186)
+.|++++.++.....
T Consensus 265 ~~~~~~v~ii~l~~~ 279 (352)
T COG3180 265 LLPAILVSIIALMAI 279 (352)
T ss_pred hcchHHHHHHHHHHH
Confidence 999999887766554
No 16
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=31.47 E-value=2.3e+02 Score=21.34 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCCCch--hhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhccC
Q 042298 115 GAALMASAFFLMQSPDTKA--IGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQDS 185 (186)
Q Consensus 115 ggaLl~~g~~ll~~~~~~~--~G~~Lal~iS~vL~~vmg~R~~kTrK~MPAGLvaiLSl~ml~~fy~~ylq~~ 185 (186)
+.+.....+...++|...| .+..+-......+....+..+- +.-+++..++..+=.......+++|+|++
T Consensus 16 ~~~~~l~~~R~i~GPt~~DRvvAld~~~~~~v~~i~lla~~~~-~~~~~dvalvlall~Fvgtva~Aryl~~~ 87 (91)
T PRK12599 16 VLALILSLYRVILGPTLPDRVVALDTLNTITVGIIAVLAAATG-RPLYLDIAIVYALLSFLGTVAIAKYLVGR 87 (91)
T ss_pred HHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333334455567775544 3332211122222333333322 33466766655443333347778887764
No 17
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=31.03 E-value=2.6e+02 Score=27.49 Aligned_cols=58 Identities=19% Similarity=0.054 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 042298 110 FGGLTGAALMA-SAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLST 171 (186)
Q Consensus 110 iaGl~ggaLl~-~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~MPAGLvaiLSl 171 (186)
.+-+.++++++ .|+...... + ..+ +-..+=+-|.....-|+.+.||..+--++..+.+
T Consensus 121 ~~~~i~s~~Yafsg~~~~~~~-~-~~f--ld~~i~lPL~llgie~~~~~~k~~~~~~~~~l~~ 179 (843)
T PF09586_consen 121 WAALIGSLLYAFSGYVIYYSF-N-IMF--LDAMILLPLLLLGIERLLKEKKWWLFIISLALAL 179 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-h-HHH--HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 44444555555 344433222 1 123 2223335577777899999999877655444444
No 18
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=30.57 E-value=1.8e+02 Score=22.78 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccC
Q 042298 161 IPAGPLLGLSTCALAVFISAYLQDS 185 (186)
Q Consensus 161 MPAGLvaiLSl~ml~~fy~~ylq~~ 185 (186)
+|.-+...+++.|+.||..+..+|.
T Consensus 95 vpe~lw~Llg~~vlgy~~~Rs~eK~ 119 (123)
T PF11351_consen 95 VPEPLWWLLGAGVLGYFGARSQEKR 119 (123)
T ss_pred CCHHHHHHHHHHHhhhHHHhhHHHH
Confidence 8999999999999999999988774
No 19
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=29.11 E-value=1.1e+02 Score=22.12 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=17.7
Q ss_pred HhHHHH-HHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHHHH
Q 042298 108 SLFGGL-TGAALMASAFFLMQSPDTK-AIGDALGFGSAFLFSSV 149 (186)
Q Consensus 108 SLiaGl-~ggaLl~~g~~ll~~~~~~-~~G~~Lal~iS~vL~~v 149 (186)
+|+.+. ..|+++..++.+-++-.++ -.|-+++..+-.+|+.+
T Consensus 12 gLitaFa~vG~~m~~S~~lS~~LT~GrihGSAIAI~lGLvLAy~ 55 (60)
T PF03818_consen 12 GLITAFAVVGIIMWVSYWLSKKLTRGRIHGSAIAIVLGLVLAYI 55 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 344442 4444445444433222111 24445555554555444
No 20
>COG4244 Predicted membrane protein [Function unknown]
Probab=28.88 E-value=3.6e+02 Score=22.78 Aligned_cols=42 Identities=29% Similarity=0.282 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHH
Q 042298 134 IGDALGFGSAFLFSSVFGIRLVAT----QRPIPAGPLLGLSTCALA 175 (186)
Q Consensus 134 ~G~~Lal~iS~vL~~vmg~R~~kT----rK~MPAGLvaiLSl~ml~ 175 (186)
+-+.++...+.+++..-..||... .+.-|+|+++.+-..+++
T Consensus 88 wh~~lG~il~~~la~~~~~r~~~~~~~~~~v~~~~L~lsl~~~~Lv 133 (160)
T COG4244 88 WHHVLGNILLIVLAILTAWRYVHRNDAVAAVSPAGLLLSLATVLLV 133 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhccHHHHHHHHHHHHHH
Confidence 444455666667777777774333 567799998877666653
No 21
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=28.78 E-value=4e+02 Score=25.26 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=17.2
Q ss_pred HHHhhhh--hhhhhcCChhHhHHHHHHHHHHHHH
Q 042298 91 LLLLGGL--FAFAKSASKGSLFGGLTGAALMASA 122 (186)
Q Consensus 91 LlavGGi--~GYvKkGS~pSLiaGl~ggaLl~~g 122 (186)
++...|+ ..+++.-+.-.++++++..++.++.
T Consensus 25 ll~~~~~~~~~~~~n~~v~~ligai~~~li~~~~ 58 (356)
T COG4956 25 LLADLGIQDTAFLNNEYVDALIGAIIFFLISFWF 58 (356)
T ss_pred HHhhcCcccchhhccHHHHHHHHHHHHHHHHHHH
Confidence 3444555 5555555555666666555554433
No 22
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=27.27 E-value=6.2e+02 Score=25.04 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=35.0
Q ss_pred HHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 042298 88 YGILLLLGGLFAFAKSASKGSLFGGLTGAALMA-SAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQR 159 (186)
Q Consensus 88 Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~-~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK 159 (186)
....+++||+.-|.-.+...+=...+.+++++. ..|....-...++++..+++...- +....+.++.+.+|
T Consensus 30 ~~L~~~l~~~~~Y~~~R~~~~~~~A~l~aiLyl~~py~l~~~y~rgni~e~lA~~llP-lvll~~~~~~~~~~ 101 (616)
T PF10131_consen 30 IFLAFFLGGLGMYFLGRRLGRRKAAILAAILYLFSPYHLRNIYWRGNIPETLAFALLP-LVLLFLYRFIKKRK 101 (616)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhHHHHHHHHhcchHHHHHHHHHHH-HHHHHHHHHHhcCC
Confidence 344456678877876666555334444444444 333332111123455555444322 22244566666554
No 23
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=27.27 E-value=3.9e+02 Score=22.71 Aligned_cols=21 Identities=24% Similarity=0.018 Sum_probs=13.3
Q ss_pred HHHHhhhhhhhhhcCChhHhH
Q 042298 90 ILLLLGGLFAFAKSASKGSLF 110 (186)
Q Consensus 90 ~LlavGGi~GYvKkGS~pSLi 110 (186)
+..++|++.-+....+.|+|.
T Consensus 100 ~f~~L~~~~~~~~~~~~~~l~ 120 (194)
T PF11833_consen 100 AFGALGLWSLLFPAASGPGLQ 120 (194)
T ss_pred HHHHHHHHHHHHcCCCCcchH
Confidence 334455555556688888886
No 24
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=24.98 E-value=3e+02 Score=20.67 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHH
Q 042298 138 LGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAY 181 (186)
Q Consensus 138 Lal~iS~vL~~vmg~R~~kTrK~MPAGLvaiLSl~ml~~fy~~y 181 (186)
+++.+|..+......++..-||+....+++++..+...+.+.+.
T Consensus 92 lGf~~at~~~~~~~~~~~g~r~~~~~~~~s~~~~~~i~~~F~~~ 135 (141)
T PF07331_consen 92 LGFIIATFLFLFAFMLLLGERRWLRLLLISVVFAAVIYFVFAKL 135 (141)
T ss_pred hhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777788877777766555544444443333333
No 25
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=24.39 E-value=4.7e+02 Score=22.71 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchh
Q 042298 140 FGSAFLFSSVFGIRLVATQRPIPAG 164 (186)
Q Consensus 140 l~iS~vL~~vmg~R~~kTrK~MPAG 164 (186)
.+++..+..+++. +..++.+-+..
T Consensus 139 ~g~~~~~~~~~g~-~a~~g~~~~~~ 162 (281)
T TIGR01474 139 LGLAFGWGALMGW-AAVTGDLSTAA 162 (281)
T ss_pred HHHHHHHHHHHHH-HHHcCCCcHHH
Confidence 4556666677775 44566654433
No 26
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=23.76 E-value=2.4e+02 Score=19.12 Aligned_cols=43 Identities=26% Similarity=0.334 Sum_probs=25.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHH
Q 042298 78 ADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAF 123 (186)
Q Consensus 78 ~~~~~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~ 123 (186)
.+.--++-++.|+.+.+.|+.++.... +.+.++.|..++..|.
T Consensus 6 g~~dR~~R~~~G~~l~~~~~~~~~~~~---~~~~~~~g~~ll~~g~ 48 (66)
T PF11127_consen 6 GTTDRIVRIIIGIVLLALGLLGLFGSW---GWLLGFVGAMLLVTGI 48 (66)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHH
Confidence 334445556677777777777775444 5555555555555443
No 27
>PRK12603 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=23.35 E-value=3.3e+02 Score=20.52 Aligned_cols=72 Identities=11% Similarity=0.058 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCCCch--hhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHHHHHHHhccC
Q 042298 113 LTGAALMASAFFLMQSPDTKA--IGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLG-LSTCALAVFISAYLQDS 185 (186)
Q Consensus 113 l~ggaLl~~g~~ll~~~~~~~--~G~~Lal~iS~vL~~vmg~R~~kTrK~MPAGLvai-LSl~ml~~fy~~ylq~~ 185 (186)
+....+....+-..++|...| .+...-......+...++..+-+..-++...++.. ++.+.+ ..+.+|+|+.
T Consensus 9 ~l~~~~~~~~~Rvl~GPT~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~~lDvaLvlAll~Fv~t-va~Aryl~~g 83 (86)
T PRK12603 9 VLLACMGAMLIYVATSRTIYDKILAANLFGTYSVVLIVVLGVINDAQSLFIDVSLVYACIGLVSA-IGFMKFFLHN 83 (86)
T ss_pred HHHHHHHHHHHHhhcCcChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HHHHHHHHcC
Confidence 333444445566668886655 33221111222233344443332222356555443 333334 7778888764
No 28
>PF06532 DUF1109: Protein of unknown function (DUF1109); InterPro: IPR009495 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.25 E-value=3.1e+02 Score=23.01 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=39.1
Q ss_pred HHHHHhhhhhhhhhcCChhH-----hHHHHHHHHHHHHHHHHhcCCCCch----hhHHHHHHHHHHHHHHHHHHHHh
Q 042298 89 GILLLLGGLFAFAKSASKGS-----LFGGLTGAALMASAFFLMQSPDTKA----IGDALGFGSAFLFSSVFGIRLVA 156 (186)
Q Consensus 89 g~LlavGGi~GYvKkGS~pS-----LiaGl~ggaLl~~g~~ll~~~~~~~----~G~~Lal~iS~vL~~vmg~R~~k 156 (186)
-.+.....++-.+|.+=... ..+|+..+.+.... |.+..++... .++.++.++..++....++|..+
T Consensus 128 lslp~~~~~~~~LR~~AP~~p~~aGa~aGl~aga~aa~~-y~l~Cp~d~~~fv~~wy~l~i~~~~~~Ga~~G~rlLR 203 (204)
T PF06532_consen 128 LSLPPLAALLWALRRGAPTRPRLAGAAAGLAAGALAATA-YALHCPEDSPPFVAVWYVLGIALVALLGALLGPRLLR 203 (204)
T ss_pred HHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH-HHhhCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34444445555555543222 24555555554444 4445554332 67778888888888888888764
No 29
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=23.20 E-value=4.9e+02 Score=22.44 Aligned_cols=23 Identities=22% Similarity=-0.154 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhc
Q 042298 81 APSTSAAYGILLLLGGLFAFAKS 103 (186)
Q Consensus 81 ~~~~g~~Yg~LlavGGi~GYvKk 103 (186)
.+..++.++.+..+++++....-
T Consensus 81 s~~~a~~~~~~~~~~~~~~~~~l 103 (282)
T TIGR01475 81 SKKEARTMIILSLALFLSASYFL 103 (282)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444433
No 30
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.93 E-value=3.9e+02 Score=20.85 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHhhhhhhhh
Q 042298 82 PSTSAAYGILLLLGGLFAFA 101 (186)
Q Consensus 82 ~~~g~~Yg~LlavGGi~GYv 101 (186)
...-...|+++...|++=|+
T Consensus 33 ~~~l~~lGall~~~gii~fv 52 (145)
T PF09925_consen 33 ARILLYLGALLLGLGIILFV 52 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666555
No 31
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=21.35 E-value=2.4e+02 Score=26.76 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=6.5
Q ss_pred HHhhhhhhhhhc
Q 042298 92 LLLGGLFAFAKS 103 (186)
Q Consensus 92 lavGGi~GYvKk 103 (186)
++.|=+.||+..
T Consensus 40 lltg~~c~~~~~ 51 (382)
T COG3448 40 LLTGLACGYVLG 51 (382)
T ss_pred HHHHHHHhhhcC
Confidence 344566677443
No 32
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=20.62 E-value=2.2e+02 Score=23.76 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=42.4
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhhcCCh---hH----hH-HHHHHHHHHHHHHHHh-cCCCCchhhHHH
Q 042298 78 ADLAPSTSAAYGILLLLGGLFAFAKSASK---GS----LF-GGLTGAALMASAFFLM-QSPDTKAIGDAL 138 (186)
Q Consensus 78 ~~~~~~~g~~Yg~LlavGGi~GYvKkGS~---pS----Li-aGl~ggaLl~~g~~ll-~~~~~~~~G~~L 138 (186)
.-++...++|.++-+++--+..|++.+.. |. ++ .+++|..+++++|..+ ..||....|-.+
T Consensus 63 rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSll 132 (153)
T PF11947_consen 63 RRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLL 132 (153)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcc
Confidence 45677788888888888888888888863 22 22 3358888888888777 667655444443
Done!