Query 042298
Match_columns 186
No_of_seqs 116 out of 309
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 08:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loo_A Transmembrane protein 1 99.8 3.4E-26 1.2E-30 175.9 0.0 94 82-179 11-104 (108)
2 2los_A Transmembrane protein 1 99.8 5.1E-26 1.7E-30 178.2 0.0 99 82-183 20-118 (121)
3 2lx0_A Membrane fusion protein 68.6 5.9 0.0002 24.1 3.4 24 162-185 9-32 (32)
4 3j1z_P YIIP, cation efflux fam 39.0 1.7E+02 0.0058 24.4 9.7 30 80-109 13-42 (306)
5 1lv4_A Catestatin, chromograni 23.1 30 0.001 20.3 1.0 18 42-59 9-26 (26)
6 4a94_C Carboxypeptidase inhibi 15.5 84 0.0029 20.8 2.0 29 50-81 6-35 (53)
7 1vf5_G Protein PET G; photosyn 14.7 1E+02 0.0035 19.4 2.1 24 162-185 6-30 (37)
8 1q90_G Cytochrome B6F complex 12.2 1.2E+02 0.0042 19.0 2.0 23 163-185 7-30 (37)
9 1iij_A ERBB-2 receptor protein 10.2 1.2E+02 0.004 18.8 1.4 12 104-115 5-16 (35)
10 1gl4_A Nidogen-1, entactin; im 8.4 29 0.00098 30.1 -2.7 38 75-112 89-126 (285)
No 1
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=99.85 E-value=3.4e-26 Score=175.91 Aligned_cols=94 Identities=21% Similarity=0.421 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 042298 82 PSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPI 161 (186)
Q Consensus 82 ~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~M 161 (186)
.+.+++||+++++||++||+|+||+|||++|+..+++++.+.++++++ ++ ++++++++|++|+++|++||++|+|+|
T Consensus 11 ~~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll~~~~~~~~~~--~~-~~~l~l~~S~~L~~~m~~R~~~t~K~m 87 (108)
T 2loo_A 11 DLIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRVSND--KR-DVKVSLFTAFFLATIMGVRFKRSKKIM 87 (108)
Confidence 567899999999999999999999999999986666667666655332 23 889999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHH
Q 042298 162 PAGPLLGLSTCALAVFIS 179 (186)
Q Consensus 162 PAGLvaiLSl~ml~~fy~ 179 (186)
|+|+++++|++|+ +||.
T Consensus 88 PaGl~a~lS~~m~-~~y~ 104 (108)
T 2loo_A 88 PAGLVAGLSLMMI-LRLV 104 (108)
Confidence 9999999999999 5554
No 2
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=99.84 E-value=5.1e-26 Score=178.24 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 042298 82 PSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPI 161 (186)
Q Consensus 82 ~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~M 161 (186)
.+.+++||+|+++||++||+|+||+|||++|+..|++++.+.++++++. + +.++++++|++|+++|+.||++|+|+|
T Consensus 20 ~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a~~~~~~~--~-~~~l~l~~S~~L~~~mg~R~~~t~K~m 96 (121)
T 2los_A 20 HWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDP--R-NVWVFLATSGTLAGIMGMRFYHSGKFM 96 (121)
Confidence 5688999999999999999999999999999866666776666664332 2 567888999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhc
Q 042298 162 PAGPLLGLSTCALAVFISAYLQ 183 (186)
Q Consensus 162 PAGLvaiLSl~ml~~fy~~ylq 183 (186)
|+|+++++|++|++.+...+++
T Consensus 97 PaGlva~lS~~m~~~~~~~ll~ 118 (121)
T 2los_A 97 PAGLIAGASLLMVAKVGVSMFN 118 (121)
Confidence 9999999999999544444443
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=68.55 E-value=5.9 Score=24.10 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhccC
Q 042298 162 PAGPLLGLSTCALAVFISAYLQDS 185 (186)
Q Consensus 162 PAGLvaiLSl~ml~~fy~~ylq~~ 185 (186)
-+|+++.+..+...+..-+|+|++
T Consensus 9 iaglvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367888888887777788888875
No 4
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=39.00 E-value=1.7e+02 Score=24.37 Aligned_cols=30 Identities=33% Similarity=0.314 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhcCChhHh
Q 042298 80 LAPSTSAAYGILLLLGGLFAFAKSASKGSL 109 (186)
Q Consensus 80 ~~~~~g~~Yg~LlavGGi~GYvKkGS~pSL 109 (186)
++.++++...+++++..+++++.+||..=+
T Consensus 13 ~a~~~si~~n~~l~~~k~~ag~~sgS~ALl 42 (306)
T 3j1z_P 13 LASRASVATALTLITIKLLAWLYSGSASML 42 (306)
T ss_dssp TTHHHHHHHHHHHTHHHHHTCTTSSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456677888888889999999999998544
No 5
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=23.05 E-value=30 Score=20.29 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=11.3
Q ss_pred ccccccccccccccCCCC
Q 042298 42 SLSFGISEAAGGLRNGKC 59 (186)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~ 59 (186)
+-.||.+.|++.+|+|-|
T Consensus 9 ar~Y~Fr~Pg~~~rrgw~ 26 (26)
T 1lv4_A 9 ARAYGFRGPGPQLXXXXX 26 (26)
T ss_dssp CCSSSSCSSCTTC-----
T ss_pred eeecccCCCccccccccC
Confidence 556999999999998854
No 6
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=15.54 E-value=84 Score=20.80 Aligned_cols=29 Identities=17% Similarity=0.544 Sum_probs=22.5
Q ss_pred ccccccCCCCCCCCCCC-cceeecccccccchh
Q 042298 50 AAGGLRNGKCNFSPRPR-PLLCRISQLEVADLA 81 (186)
Q Consensus 50 ~~~~~~~~~~~~~~~~~-~~~c~~~~~~~~~~~ 81 (186)
.-+++..|+||..+..+ .+.||. .=+|++
T Consensus 6 drpcinpgrcplvpdatctfvcka---adndfg 35 (53)
T 4a94_C 6 DRPCINPGRCPLVPDATCTFVCKA---ADNDFG 35 (53)
T ss_dssp CBCCSSCCCCTTSTTCEEEEEEEE---CSSTTS
T ss_pred CCcccCCCcCccccCCeEEEEEee---ccCCCC
Confidence 35688899999999888 899998 335554
No 7
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=14.71 E-value=1e+02 Score=19.43 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHH-HHHHHHhccC
Q 042298 162 PAGPLLGLSTCALA-VFISAYLQDS 185 (186)
Q Consensus 162 PAGLvaiLSl~ml~-~fy~~ylq~~ 185 (186)
..|++..+--+.++ .|+.+|+|-+
T Consensus 6 L~GIVlGlipvtl~GLfv~Ay~Qyr 30 (37)
T 1vf5_G 6 LDGLVLGLVFATLGGLFYAAYQQYK 30 (37)
T ss_dssp ---CHHHHHHHHHHHHTHHHHHHTC
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 34555444333333 6778887754
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=12.24 E-value=1.2e+02 Score=19.04 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHH-HHHHHHhccC
Q 042298 163 AGPLLGLSTCALA-VFISAYLQDS 185 (186)
Q Consensus 163 AGLvaiLSl~ml~-~fy~~ylq~~ 185 (186)
.|++.++--+.++ .|+.+|+|-+
T Consensus 7 ~GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHh
Confidence 3444443333332 6777777743
No 9
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=10.22 E-value=1.2e+02 Score=18.76 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=8.4
Q ss_pred CChhHhHHHHHH
Q 042298 104 ASKGSLFGGLTG 115 (186)
Q Consensus 104 GS~pSLiaGl~g 115 (186)
...||.++|+.|
T Consensus 5 s~~~sIaagVvg 16 (35)
T 1iij_A 5 SPVTFIIATVVG 16 (35)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCCcEeHHHHHH
Confidence 445777788777
No 10
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=8.44 E-value=29 Score=30.14 Aligned_cols=38 Identities=11% Similarity=0.254 Sum_probs=33.5
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhhhcCChhHhHHH
Q 042298 75 LEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGG 112 (186)
Q Consensus 75 ~~~~~~~~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaG 112 (186)
..++.+.+.++..+=.|+.+||+||++.+.+.+...-|
T Consensus 89 tais~Ip~~~G~~l~~L~~ig~~igWlfA~e~~~~~NG 126 (285)
T 1gl4_A 89 TAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNG 126 (285)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHHHHHHTCEECTTCCCH
T ss_pred EEeccCChhhchhhhhhhhhccceeeeeecccCccccc
Confidence 36788999999999999999999999999998877666
Done!