Query 042298
Match_columns 186
No_of_seqs 116 out of 309
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 08:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042298.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042298hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 14.4 64 0.0046 18.7 2.6 32 75-106 1-32 (36)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 10.6 1.3E+02 0.0096 16.1 3.0 9 176-184 13-21 (27)
3 d1gl4a1 d.22.1.2 (A:399-631) D 9.2 12 0.00086 29.8 -2.7 37 76-112 44-80 (233)
4 d1q90g_ f.23.26.1 (G:) PetG su 6.6 2.2E+02 0.016 15.6 3.0 8 176-183 21-28 (30)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.2 3.3E+02 0.024 20.7 5.0 7 157-163 47-53 (248)
6 d1hvwa_ g.3.6.2 (A:) Atracotox 4.6 89 0.0065 16.7 0.2 10 3-12 13-22 (26)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 4.4 2.2E+02 0.016 16.0 2.0 12 169-181 16-27 (34)
8 d1w98b2 a.74.1.1 (B:88-227) G1 4.3 5E+02 0.037 17.0 5.8 39 144-183 64-102 (140)
9 d2csva1 g.43.1.1 (A:8-66) Trip 3.5 3E+02 0.022 16.0 2.2 26 50-75 5-30 (59)
10 d1tocr1 g.8.1.2 (R:1A-56) Orni 3.2 1.1E+02 0.0083 18.9 -0.1 21 28-48 19-39 (57)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.40 E-value=64 Score=18.74 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=20.6
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhhhcCCh
Q 042298 75 LEVADLAPSTSAAYGILLLLGGLFAFAKSASK 106 (186)
Q Consensus 75 ~~~~~~~~~~g~~Yg~LlavGGi~GYvKkGS~ 106 (186)
|++++++-+++..|-+.=.+==++=|+++.|.
T Consensus 1 MevN~Lg~iAt~LFilvPt~FLliLyvqT~s~ 32 (36)
T d2axtm1 1 MEVNQLGLIATALFVLVPSVFLIILYVQTESQ 32 (36)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhheeeccc
Confidence 57778888777666555555555666666553
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.64 E-value=1.3e+02 Score=16.14 Aligned_cols=9 Identities=44% Similarity=0.656 Sum_probs=7.0
Q ss_pred HHHHHHhcc
Q 042298 176 VFISAYLQD 184 (186)
Q Consensus 176 ~fy~~ylq~ 184 (186)
.||.+|.|-
T Consensus 13 lf~aayqqy 21 (27)
T d2e74g1 13 LFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 788888774
No 3
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.20 E-value=12 Score=29.77 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=32.8
Q ss_pred cccchhhHHHHHHHHHHHhhhhhhhhhcCChhHhHHH
Q 042298 76 EVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGG 112 (186)
Q Consensus 76 ~~~~~~~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaG 112 (186)
.+|.+.+.+|...=.|+.+||.||++.+..++.-.-|
T Consensus 44 aIs~IP~~~G~~L~~L~~ig~~igWlFA~e~~~a~NG 80 (233)
T d1gl4a1 44 AISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNG 80 (233)
T ss_dssp EEESCCHHHHGGGTTCTHHHHHHHHHTCEECTTCCCH
T ss_pred EccCCChhHhhhhhhhhhhcCceeeeEEeecCCccCc
Confidence 6788999999999999999999999999988876666
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.56 E-value=2.2e+02 Score=15.56 Aligned_cols=8 Identities=63% Similarity=1.261 Sum_probs=5.4
Q ss_pred HHHHHHhc
Q 042298 176 VFISAYLQ 183 (186)
Q Consensus 176 ~fy~~ylq 183 (186)
.|..+|+|
T Consensus 21 lfv~AylQ 28 (30)
T d1q90g_ 21 LFVTAYLQ 28 (30)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56677766
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.23 E-value=3.3e+02 Score=20.66 Aligned_cols=7 Identities=0% Similarity=0.050 Sum_probs=3.9
Q ss_pred cCCCcch
Q 042298 157 TQRPIPA 163 (186)
Q Consensus 157 TrK~MPA 163 (186)
++|..|.
T Consensus 47 s~r~~p~ 53 (248)
T d2r6gf1 47 NRKAYAW 53 (248)
T ss_dssp SSCCTTH
T ss_pred ccCccce
Confidence 4566664
No 6
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=4.57 E-value=89 Score=16.66 Aligned_cols=10 Identities=50% Similarity=1.112 Sum_probs=7.6
Q ss_pred cccccccccc
Q 042298 3 LCCAQAATGK 12 (186)
Q Consensus 3 ~~~~~~~~~~ 12 (186)
-||.|.-||-
T Consensus 13 nccsqsctgg 22 (26)
T d1hvwa_ 13 NCCSQSCTGG 22 (26)
T ss_dssp SBSSCCEETT
T ss_pred ccccccccCC
Confidence 4899988873
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.45 E-value=2.2e+02 Score=16.02 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 042298 169 LSTCALAVFISAY 181 (186)
Q Consensus 169 LSl~ml~~fy~~y 181 (186)
++++.+ +||..|
T Consensus 16 i~~vG~-FfYGsY 27 (34)
T d2axtj1 16 IVIVGL-FFYGAY 27 (34)
T ss_dssp HHHHHH-HHHHTT
T ss_pred Hhheee-eeeeee
Confidence 333333 677666
No 8
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.33 E-value=5e+02 Score=17.00 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhc
Q 042298 144 FLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQ 183 (186)
Q Consensus 144 ~vL~~vmg~R~~kTrK~MPAGLvaiLSl~ml~~fy~~ylq 183 (186)
+.+++.+.=||...++.+|..-.=.+++..+ ..-+++-|
T Consensus 64 ~~lAv~llDryl~~~~~v~~~~lqL~a~acL-~IAsK~ee 102 (140)
T d1w98b2 64 FYLAQDFFDRYMATQENVVKTLLQLIGISSL-FIAAKLEE 102 (140)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGHHHHHHHHH-HHHHHHHC
T ss_pred HHHHHHHHHHHHhccccccHHHHhHHHHHHH-HHHHHHcc
Confidence 4566666667776666666544333333333 34445444
No 9
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.54 E-value=3e+02 Score=15.98 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=19.6
Q ss_pred ccccccCCCCCCCCCCCcceeecccc
Q 042298 50 AAGGLRNGKCNFSPRPRPLLCRISQL 75 (186)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~c~~~~~ 75 (186)
|-.++.+++++.+.+.-.++|...+.
T Consensus 5 P~~~~~~~~C~~H~e~l~lyC~~c~~ 30 (59)
T d2csva1 5 PIRDFEARKCPVHGKTMELFCQTDQT 30 (59)
T ss_dssp CSSSSSCCBCTTTCCBCCEEESSSCC
T ss_pred cchhhhhCchhhhCCccceECCCCCc
Confidence 44567788999998777999987553
No 10
>d1tocr1 g.8.1.2 (R:1A-56) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=3.23 E-value=1.1e+02 Score=18.95 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=15.6
Q ss_pred ccccccccccceecccccccc
Q 042298 28 KNNNVKREDDTRVTSLSFGIS 48 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~ 48 (186)
|.+..-||-.|||.||+--.+
T Consensus 19 ~~~~yfreg~tc~~spac~~e 39 (57)
T d1tocr1 19 QVDRYFREGTTCLMSPACTSE 39 (57)
T ss_dssp EEEEEEEETTEEEEEEEETTS
T ss_pred HHHHHHhcCCeeecCCCcCCC
Confidence 445566999999999986444
Done!