Query 042301
Match_columns 227
No_of_seqs 131 out of 1144
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:54:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 4.2E-41 9E-46 261.0 25.3 216 3-222 8-227 (231)
2 PRK09481 sspA stringent starva 100.0 2.4E-38 5.3E-43 249.7 24.0 195 4-209 10-205 (211)
3 KOG0868 Glutathione S-transfer 100.0 1E-36 2.2E-41 223.2 14.5 194 2-207 3-208 (217)
4 PLN02473 glutathione S-transfe 100.0 3.6E-35 7.7E-40 232.1 19.4 193 1-205 1-210 (214)
5 PRK15113 glutathione S-transfe 100.0 5E-35 1.1E-39 231.3 19.8 193 1-208 1-210 (214)
6 TIGR01262 maiA maleylacetoacet 100.0 4.6E-34 1E-38 225.0 19.3 191 6-207 1-205 (210)
7 PLN02395 glutathione S-transfe 100.0 6.6E-34 1.4E-38 225.0 19.7 193 1-206 1-210 (215)
8 PRK10542 glutathionine S-trans 100.0 3.9E-34 8.5E-39 224.0 17.7 188 5-206 1-197 (201)
9 PRK13972 GSH-dependent disulfi 100.0 4.8E-34 1E-38 225.8 17.4 187 4-206 1-205 (215)
10 PRK10357 putative glutathione 100.0 2.8E-33 6E-38 219.4 21.0 191 5-206 1-200 (202)
11 TIGR00862 O-ClC intracellular 100.0 9.3E-33 2E-37 219.3 22.8 196 10-219 16-233 (236)
12 COG0625 Gst Glutathione S-tran 100.0 6.4E-33 1.4E-37 218.8 19.8 184 5-201 1-199 (211)
13 PRK11752 putative S-transferas 100.0 4.4E-32 9.5E-37 220.6 20.6 194 4-207 44-259 (264)
14 PTZ00057 glutathione s-transfe 100.0 4.8E-32 1E-36 212.9 19.5 192 1-208 1-201 (205)
15 PLN02378 glutathione S-transfe 100.0 6.5E-32 1.4E-36 213.3 20.0 185 10-209 17-202 (213)
16 PLN02817 glutathione dehydroge 100.0 3.5E-31 7.6E-36 214.5 21.7 186 11-212 71-257 (265)
17 KOG0867 Glutathione S-transfer 100.0 6.3E-30 1.4E-34 203.1 17.7 196 4-209 2-212 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 3.4E-29 7.5E-34 197.3 15.3 177 5-200 1-207 (210)
19 TIGR02182 GRXB Glutaredoxin, G 99.9 7.5E-27 1.6E-31 183.9 16.2 175 6-200 1-206 (209)
20 KOG1695 Glutathione S-transfer 99.9 4.4E-26 9.5E-31 176.1 17.7 195 1-208 1-202 (206)
21 KOG4420 Uncharacterized conser 99.9 1E-25 2.2E-30 174.5 13.7 208 4-217 26-298 (325)
22 KOG1422 Intracellular Cl- chan 99.9 4E-23 8.6E-28 155.9 17.4 194 11-217 19-216 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 2.7E-22 5.9E-27 181.0 17.0 158 1-199 1-159 (722)
24 PF13417 GST_N_3: Glutathione 99.8 3.5E-20 7.5E-25 122.2 8.0 74 7-82 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 3E-19 6.5E-24 117.1 8.6 73 5-79 1-73 (73)
26 cd03052 GST_N_GDAP1 GST_N fami 99.8 2.8E-19 6.2E-24 117.1 7.9 70 5-76 1-73 (73)
27 cd03061 GST_N_CLIC GST_N famil 99.8 3.3E-19 7.1E-24 120.5 8.4 70 11-82 20-89 (91)
28 cd03058 GST_N_Tau GST_N family 99.8 4.6E-19 9.9E-24 116.6 8.6 73 5-79 1-74 (74)
29 cd03041 GST_N_2GST_N GST_N fam 99.8 1E-18 2.3E-23 115.7 7.7 74 4-79 1-77 (77)
30 cd03060 GST_N_Omega_like GST_N 99.8 2E-18 4.3E-23 112.6 8.0 69 5-75 1-70 (71)
31 cd03045 GST_N_Delta_Epsilon GS 99.8 2.3E-18 4.9E-23 113.2 7.9 71 5-77 1-74 (74)
32 cd03053 GST_N_Phi GST_N family 99.8 5.1E-18 1.1E-22 112.1 8.6 72 5-78 2-76 (76)
33 KOG3029 Glutathione S-transfer 99.8 2.5E-17 5.5E-22 129.5 13.7 182 4-197 90-355 (370)
34 cd03076 GST_N_Pi GST_N family, 99.7 3E-18 6.5E-23 112.3 6.7 71 5-77 2-72 (73)
35 cd03050 GST_N_Theta GST_N fami 99.7 8.1E-18 1.8E-22 111.2 8.6 73 5-79 1-76 (76)
36 cd03055 GST_N_Omega GST_N fami 99.7 8.6E-18 1.9E-22 114.4 8.5 72 3-76 17-89 (89)
37 cd03048 GST_N_Ure2p_like GST_N 99.7 9.7E-18 2.1E-22 112.2 8.5 74 4-80 1-80 (81)
38 cd03044 GST_N_EF1Bgamma GST_N 99.7 1.1E-17 2.4E-22 110.2 7.6 70 6-77 2-74 (75)
39 cd03185 GST_C_Tau GST_C family 99.7 1.8E-16 3.9E-21 114.7 14.4 123 90-216 2-125 (126)
40 cd03056 GST_N_4 GST_N family, 99.7 1.6E-17 3.4E-22 108.7 7.8 70 5-76 1-73 (73)
41 cd03047 GST_N_2 GST_N family, 99.7 1.8E-17 3.8E-22 108.7 7.8 70 5-76 1-73 (73)
42 cd03049 GST_N_3 GST_N family, 99.7 1.7E-17 3.8E-22 108.7 7.5 70 5-76 1-73 (73)
43 cd03039 GST_N_Sigma_like GST_N 99.7 1.1E-17 2.4E-22 109.3 6.4 71 5-77 1-72 (72)
44 KOG4244 Failed axon connection 99.7 2.4E-16 5.2E-21 123.4 14.1 175 5-196 46-272 (281)
45 cd03037 GST_N_GRX2 GST_N famil 99.7 3.4E-17 7.4E-22 106.7 7.4 70 5-77 1-71 (71)
46 cd03042 GST_N_Zeta GST_N famil 99.7 4.1E-17 8.8E-22 106.8 7.8 70 5-76 1-73 (73)
47 cd03046 GST_N_GTT1_like GST_N 99.7 4.9E-17 1.1E-21 107.3 8.2 73 5-80 1-76 (76)
48 cd03057 GST_N_Beta GST_N famil 99.7 5.3E-17 1.1E-21 107.5 8.1 73 5-80 1-77 (77)
49 cd03051 GST_N_GTT2_like GST_N 99.7 4.1E-17 8.8E-22 107.0 7.3 70 5-76 1-74 (74)
50 cd03080 GST_N_Metaxin_like GST 99.7 2.2E-16 4.7E-21 104.0 8.2 68 4-80 1-75 (75)
51 PF13409 GST_N_2: Glutathione 99.7 1.6E-16 3.4E-21 103.2 7.3 65 12-78 1-70 (70)
52 PF02798 GST_N: Glutathione S- 99.7 1.7E-16 3.7E-21 104.8 7.5 69 5-77 3-76 (76)
53 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.5E-16 3.3E-21 105.3 7.3 72 4-79 1-76 (77)
54 cd03077 GST_N_Alpha GST_N fami 99.7 3.1E-16 6.7E-21 104.3 7.9 72 4-80 1-77 (79)
55 cd03075 GST_N_Mu GST_N family, 99.7 2.4E-16 5.1E-21 105.6 7.3 73 5-79 1-82 (82)
56 cd03184 GST_C_Omega GST_C fami 99.7 1.9E-15 4.2E-20 109.2 12.4 122 91-216 2-123 (124)
57 cd03190 GST_C_ECM4_like GST_C 99.7 2.5E-15 5.4E-20 111.2 12.1 124 90-219 3-131 (142)
58 cd03038 GST_N_etherase_LigE GS 99.6 9E-16 2E-20 103.3 7.3 67 11-80 14-84 (84)
59 COG2999 GrxB Glutaredoxin 2 [P 99.6 1.9E-14 4.1E-19 106.2 13.7 179 5-199 1-206 (215)
60 cd03186 GST_C_SspA GST_N famil 99.6 1.2E-14 2.6E-19 102.2 12.4 105 89-203 1-106 (107)
61 cd03043 GST_N_1 GST_N family, 99.6 2.1E-15 4.5E-20 98.8 7.7 67 8-76 5-73 (73)
62 cd03196 GST_C_5 GST_C family, 99.6 9.2E-15 2E-19 104.3 11.3 109 87-203 2-114 (115)
63 cd00570 GST_N_family Glutathio 99.6 6.3E-15 1.4E-19 94.9 7.8 70 5-76 1-71 (71)
64 cd03203 GST_C_Lambda GST_C fam 99.6 3.8E-14 8.2E-19 101.9 11.1 116 88-214 1-119 (120)
65 cd03188 GST_C_Beta GST_C famil 99.6 3.3E-14 7.1E-19 100.9 10.1 103 91-204 2-114 (114)
66 cd03054 GST_N_Metaxin GST_N fa 99.6 1.5E-14 3.3E-19 94.4 7.6 65 5-78 1-72 (72)
67 cd03198 GST_C_CLIC GST_C famil 99.6 1.2E-13 2.5E-18 100.3 12.6 108 103-214 8-132 (134)
68 COG0435 ECM4 Predicted glutath 99.5 1.1E-13 2.4E-18 109.0 10.8 196 3-208 50-288 (324)
69 KOG2903 Predicted glutathione 99.5 3.4E-14 7.3E-19 110.9 7.7 206 3-214 36-296 (319)
70 cd03189 GST_C_GTT1_like GST_C 99.5 3.1E-13 6.8E-18 96.7 12.2 102 86-198 2-119 (119)
71 cd03201 GST_C_DHAR GST_C famil 99.5 3.5E-13 7.7E-18 96.9 12.4 107 104-215 12-119 (121)
72 cd03191 GST_C_Zeta GST_C famil 99.5 1.2E-13 2.6E-18 99.2 9.6 108 90-206 2-119 (121)
73 cd03182 GST_C_GTT2_like GST_C 99.5 4.6E-13 9.9E-18 95.5 12.1 103 88-200 1-117 (117)
74 cd03177 GST_C_Delta_Epsilon GS 99.5 2.9E-13 6.2E-18 96.9 10.3 104 91-204 2-110 (118)
75 cd03210 GST_C_Pi GST_C family, 99.5 5E-13 1.1E-17 96.8 11.0 109 91-208 3-114 (126)
76 cd03209 GST_C_Mu GST_C family, 99.5 7.5E-13 1.6E-17 95.2 11.3 107 91-208 2-111 (121)
77 cd03208 GST_C_Alpha GST_C fami 99.5 1.2E-12 2.7E-17 96.1 11.6 109 91-208 3-117 (137)
78 cd03187 GST_C_Phi GST_C family 99.5 8.5E-13 1.8E-17 94.2 10.2 105 91-204 2-118 (118)
79 cd03178 GST_C_Ure2p_like GST_C 99.4 3.4E-13 7.4E-18 95.6 7.3 104 91-204 1-112 (113)
80 cd03180 GST_C_2 GST_C family, 99.4 1.8E-12 3.8E-17 91.3 10.7 99 91-200 2-110 (110)
81 KOG3027 Mitochondrial outer me 99.4 1.2E-11 2.6E-16 93.6 14.8 170 11-197 32-248 (257)
82 cd03181 GST_C_EFB1gamma GST_C 99.4 2.1E-12 4.6E-17 92.9 9.8 110 91-208 1-118 (123)
83 cd03200 GST_C_JTV1 GST_C famil 99.4 4.5E-12 9.8E-17 87.3 9.2 95 72-196 1-95 (96)
84 cd03183 GST_C_Theta GST_C fami 99.4 7.2E-12 1.6E-16 90.6 10.4 103 92-204 2-120 (126)
85 cd03207 GST_C_8 GST_C family, 99.4 2.1E-12 4.5E-17 90.1 6.9 76 118-205 26-101 (103)
86 cd03195 GST_C_4 GST_C family, 99.3 1.1E-11 2.4E-16 88.2 9.8 103 90-205 2-112 (114)
87 cd03206 GST_C_7 GST_C family, 99.3 4.1E-12 8.9E-17 88.2 7.3 71 119-200 30-100 (100)
88 PF00043 GST_C: Glutathione S- 99.3 1.7E-11 3.7E-16 84.1 8.7 71 119-198 25-95 (95)
89 cd03079 GST_N_Metaxin2 GST_N f 99.3 9.9E-12 2.2E-16 80.7 6.8 60 11-78 15-74 (74)
90 PF13410 GST_C_2: Glutathione 99.2 4.1E-11 8.8E-16 77.3 7.2 68 118-193 2-69 (69)
91 cd03204 GST_C_GDAP1 GST_C fami 99.2 5.5E-11 1.2E-15 83.7 8.2 77 118-200 25-111 (111)
92 PF14497 GST_C_3: Glutathione 99.2 3.3E-11 7E-16 83.5 6.4 98 88-196 2-99 (99)
93 cd03179 GST_C_1 GST_C family, 99.2 4.5E-11 9.8E-16 83.4 6.9 94 91-195 2-105 (105)
94 cd03194 GST_C_3 GST_C family, 99.2 2E-10 4.4E-15 81.7 8.9 75 119-205 38-113 (114)
95 TIGR02190 GlrX-dom Glutaredoxi 99.2 1.4E-10 3E-15 77.0 7.4 72 3-76 8-79 (79)
96 cd03192 GST_C_Sigma_like GST_C 99.1 4.8E-10 1E-14 78.2 9.8 96 91-194 2-104 (104)
97 PRK10638 glutaredoxin 3; Provi 99.1 3E-10 6.6E-15 76.1 7.4 73 1-76 1-74 (83)
98 cd03202 GST_C_etherase_LigE GS 99.1 4.7E-10 1E-14 81.0 8.0 69 120-197 56-124 (124)
99 cd00299 GST_C_family Glutathio 99.0 8.3E-10 1.8E-14 75.8 7.1 91 96-194 2-100 (100)
100 cd03029 GRX_hybridPRX5 Glutare 99.0 2.2E-09 4.7E-14 69.8 7.9 71 4-76 2-72 (72)
101 cd03193 GST_C_Metaxin GST_C fa 99.0 1.9E-09 4.2E-14 72.9 7.4 68 120-195 17-88 (88)
102 cd03078 GST_N_Metaxin1_like GS 99.0 2.5E-09 5.5E-14 69.7 7.6 59 11-78 14-72 (73)
103 cd03197 GST_C_mPGES2 GST_C fam 98.9 1.7E-08 3.7E-13 74.2 8.9 67 121-196 78-145 (149)
104 KOG3028 Translocase of outer m 98.8 6.6E-07 1.4E-11 72.5 17.5 169 12-196 16-233 (313)
105 cd03027 GRX_DEP Glutaredoxin ( 98.8 2.5E-08 5.5E-13 65.0 6.8 68 4-73 2-70 (73)
106 PRK10329 glutaredoxin-like pro 98.8 2.5E-08 5.4E-13 66.3 6.3 61 4-66 2-62 (81)
107 cd03211 GST_C_Metaxin2 GST_C f 98.7 1.8E-08 4E-13 72.8 5.4 70 119-195 54-126 (126)
108 TIGR02196 GlrX_YruB Glutaredox 98.7 4.5E-08 9.7E-13 63.3 6.6 70 4-75 1-73 (74)
109 PF14834 GST_C_4: Glutathione 98.7 2.3E-07 5E-12 64.4 10.3 104 88-204 1-112 (117)
110 cd02976 NrdH NrdH-redoxin (Nrd 98.7 4.1E-08 8.9E-13 63.4 5.9 63 4-68 1-64 (73)
111 cd02066 GRX_family Glutaredoxi 98.7 1.2E-07 2.5E-12 60.9 7.0 69 4-74 1-70 (72)
112 cd03212 GST_C_Metaxin1_3 GST_C 98.6 1.2E-07 2.6E-12 69.5 7.3 69 119-196 61-134 (137)
113 cd03205 GST_C_6 GST_C family, 98.6 4.4E-07 9.5E-12 62.5 9.3 66 118-194 33-98 (98)
114 TIGR02200 GlrX_actino Glutared 98.5 3E-07 6.6E-12 60.1 6.2 64 4-69 1-67 (77)
115 COG0695 GrxC Glutaredoxin and 98.5 8.5E-07 1.8E-11 58.8 7.4 69 4-74 2-73 (80)
116 cd03418 GRX_GRXb_1_3_like Glut 98.5 9.3E-07 2E-11 57.6 6.9 70 4-75 1-72 (75)
117 TIGR02181 GRX_bact Glutaredoxi 98.4 8.4E-07 1.8E-11 58.6 6.7 71 5-77 1-72 (79)
118 PRK11200 grxA glutaredoxin 1; 98.4 1.5E-06 3.2E-11 58.3 7.5 75 4-80 2-84 (85)
119 TIGR02194 GlrX_NrdH Glutaredox 98.4 6.4E-07 1.4E-11 58.1 5.4 57 5-63 1-57 (72)
120 PF00462 Glutaredoxin: Glutare 98.4 5.7E-07 1.2E-11 56.1 4.3 59 5-65 1-60 (60)
121 TIGR02189 GlrX-like_plant Glut 98.3 6.9E-06 1.5E-10 56.7 8.5 70 3-74 8-81 (99)
122 TIGR02183 GRXA Glutaredoxin, G 98.3 4.7E-06 1E-10 56.0 7.3 74 5-80 2-83 (86)
123 cd03419 GRX_GRXh_1_2_like Glut 98.3 7.6E-06 1.6E-10 54.2 8.1 72 4-77 1-76 (82)
124 TIGR02180 GRX_euk Glutaredoxin 98.0 5.2E-05 1.1E-09 50.3 8.0 71 5-77 1-77 (84)
125 PHA03050 glutaredoxin; Provisi 98.0 6.5E-05 1.4E-09 52.7 8.1 70 3-73 13-88 (108)
126 TIGR00365 monothiol glutaredox 97.9 4.8E-05 1E-09 52.3 7.1 71 3-75 12-88 (97)
127 PF10568 Tom37: Outer mitochon 97.9 6.1E-05 1.3E-09 48.7 6.7 56 11-75 12-71 (72)
128 cd03028 GRX_PICOT_like Glutare 97.9 7E-05 1.5E-09 50.7 7.1 70 4-75 9-84 (90)
129 PRK12759 bifunctional gluaredo 97.6 0.00021 4.5E-09 61.9 7.8 70 1-73 1-79 (410)
130 cd03031 GRX_GRX_like Glutaredo 97.5 0.00044 9.6E-09 51.1 7.0 68 5-74 2-80 (147)
131 PF04399 Glutaredoxin2_C: Glut 97.4 0.0008 1.7E-08 48.7 6.6 68 120-200 57-124 (132)
132 PRK10824 glutaredoxin-4; Provi 97.2 0.0019 4E-08 45.7 7.0 70 4-75 16-91 (115)
133 cd03199 GST_C_GRX2 GST_C famil 97.0 0.0032 6.8E-08 45.3 6.7 67 120-199 58-124 (128)
134 KOG1147 Glutamyl-tRNA syntheta 97.0 0.00064 1.4E-08 59.3 3.5 115 62-202 45-160 (712)
135 KOG1752 Glutaredoxin and relat 96.9 0.0055 1.2E-07 42.5 7.1 71 3-75 14-88 (104)
136 COG4545 Glutaredoxin-related p 96.8 0.0053 1.1E-07 39.2 5.4 63 1-66 1-77 (85)
137 cd02973 TRX_GRX_like Thioredox 96.7 0.0059 1.3E-07 38.5 5.5 58 4-66 2-64 (67)
138 PRK01655 spxA transcriptional 96.6 0.0035 7.6E-08 45.5 4.4 32 5-37 2-33 (131)
139 cd03036 ArsC_like Arsenate Red 96.6 0.003 6.6E-08 44.4 3.8 33 5-38 1-33 (111)
140 cd02977 ArsC_family Arsenate R 96.5 0.004 8.7E-08 43.3 4.0 32 5-37 1-32 (105)
141 cd03032 ArsC_Spx Arsenate Redu 96.4 0.0052 1.1E-07 43.5 4.3 32 5-37 2-33 (115)
142 PTZ00062 glutaredoxin; Provisi 96.4 0.014 3.1E-07 45.6 7.1 69 4-74 114-188 (204)
143 TIGR00412 redox_disulf_2 small 96.3 0.022 4.8E-07 37.0 6.3 54 5-65 3-60 (76)
144 PRK10026 arsenate reductase; P 96.1 0.0099 2.1E-07 43.6 4.4 34 1-36 1-34 (141)
145 PRK12559 transcriptional regul 96.0 0.016 3.5E-07 42.0 5.2 33 4-37 1-33 (131)
146 PRK13344 spxA transcriptional 96.0 0.018 3.8E-07 41.9 5.4 32 5-37 2-33 (132)
147 TIGR01617 arsC_related transcr 96.0 0.01 2.2E-07 42.1 4.0 32 5-37 1-32 (117)
148 PF05768 DUF836: Glutaredoxin- 96.0 0.04 8.6E-07 36.3 6.5 56 4-62 1-57 (81)
149 cd03030 GRX_SH3BGR Glutaredoxi 95.5 0.072 1.6E-06 36.1 6.4 67 5-73 2-79 (92)
150 cd03033 ArsC_15kD Arsenate Red 95.5 0.024 5.1E-07 40.0 4.2 32 5-37 2-33 (113)
151 cd03035 ArsC_Yffb Arsenate Red 95.5 0.022 4.8E-07 39.6 3.9 32 5-37 1-32 (105)
152 COG1393 ArsC Arsenate reductas 95.2 0.036 7.7E-07 39.4 4.3 33 4-37 2-34 (117)
153 TIGR00411 redox_disulf_1 small 95.1 0.096 2.1E-06 34.0 5.9 57 4-63 2-62 (82)
154 PRK10853 putative reductase; P 94.5 0.065 1.4E-06 38.1 4.2 31 5-36 2-32 (118)
155 PHA02125 thioredoxin-like prot 94.5 0.12 2.6E-06 33.3 5.1 51 5-60 2-52 (75)
156 TIGR01616 nitro_assoc nitrogen 93.9 0.11 2.3E-06 37.5 4.2 32 4-36 2-33 (126)
157 cd01659 TRX_superfamily Thiore 93.8 0.16 3.5E-06 30.1 4.5 54 5-60 1-59 (69)
158 cd03034 ArsC_ArsC Arsenate Red 93.2 0.15 3.2E-06 35.9 3.9 31 5-36 1-31 (112)
159 TIGR00014 arsC arsenate reduct 93.0 0.16 3.5E-06 35.8 3.9 32 5-37 1-32 (114)
160 cd03026 AhpF_NTD_C TRX-GRX-lik 92.8 0.2 4.2E-06 33.7 4.0 58 4-66 15-77 (89)
161 PF13192 Thioredoxin_3: Thiore 91.1 0.71 1.5E-05 29.8 5.0 55 5-66 3-61 (76)
162 PF11801 Tom37_C: Tom37 C-term 88.9 1.1 2.4E-05 33.9 5.2 38 126-167 112-153 (168)
163 COG0278 Glutaredoxin-related p 87.6 2.1 4.6E-05 29.2 5.3 71 4-76 16-93 (105)
164 PF11287 DUF3088: Protein of u 87.1 2.2 4.8E-05 29.8 5.3 70 11-80 22-108 (112)
165 PF09635 MetRS-N: MetRS-N bind 86.3 1.8 4E-05 30.7 4.6 27 54-80 35-63 (122)
166 PF04908 SH3BGR: SH3-binding, 86.3 3.1 6.8E-05 28.5 5.7 66 5-72 3-84 (99)
167 PF03960 ArsC: ArsC family; I 83.1 1.6 3.4E-05 30.4 3.2 29 8-37 1-29 (110)
168 cd02984 TRX_PICOT TRX domain, 70.0 28 0.00061 22.8 6.6 57 5-64 18-80 (97)
169 KOG1668 Elongation factor 1 be 68.7 2.7 5.8E-05 33.3 1.2 59 128-201 10-68 (231)
170 TIGR01295 PedC_BrcD bacterioci 68.4 26 0.00056 24.8 6.2 32 5-37 27-62 (122)
171 TIGR03143 AhpF_homolog putativ 68.0 13 0.00029 33.7 5.7 55 4-64 479-539 (555)
172 cd02949 TRX_NTR TRX domain, no 67.2 28 0.0006 23.1 6.0 56 5-64 17-79 (97)
173 TIGR02187 GlrX_arch Glutaredox 66.0 24 0.00051 27.6 6.2 55 5-61 137-193 (215)
174 PRK15317 alkyl hydroperoxide r 64.4 11 0.00023 33.9 4.4 73 4-78 119-197 (517)
175 cd02947 TRX_family TRX family; 64.2 33 0.00073 21.5 6.4 54 5-63 14-74 (93)
176 cd02989 Phd_like_TxnDC9 Phosdu 63.4 24 0.00052 24.5 5.2 60 5-66 26-89 (113)
177 TIGR03140 AhpF alkyl hydropero 63.0 12 0.00025 33.7 4.4 61 4-67 120-183 (515)
178 KOG0911 Glutaredoxin-related p 59.8 23 0.00049 28.1 4.8 65 10-76 151-216 (227)
179 cd02963 TRX_DnaJ TRX domain, D 59.4 55 0.0012 22.4 7.3 55 5-63 28-90 (111)
180 PTZ00051 thioredoxin; Provisio 54.3 59 0.0013 21.3 5.8 53 5-59 22-76 (98)
181 cd02975 PfPDO_like_N Pyrococcu 53.9 28 0.0006 24.2 4.2 53 5-60 25-81 (113)
182 PHA03075 glutaredoxin-like pro 52.2 28 0.0006 24.6 3.7 68 1-77 1-68 (123)
183 PF00085 Thioredoxin: Thioredo 50.1 70 0.0015 20.9 8.5 70 5-77 21-102 (103)
184 PRK10996 thioredoxin 2; Provis 48.4 1E+02 0.0022 22.2 6.7 57 5-64 56-118 (139)
185 KOG2824 Glutaredoxin-related p 47.4 30 0.00066 28.3 3.8 57 16-74 150-211 (281)
186 PRK09381 trxA thioredoxin; Pro 46.3 89 0.0019 21.0 8.3 57 5-64 25-87 (109)
187 cd02956 ybbN ybbN protein fami 46.3 81 0.0018 20.5 6.5 57 5-64 16-78 (96)
188 TIGR02187 GlrX_arch Glutaredox 45.2 73 0.0016 24.8 5.8 53 5-60 23-83 (215)
189 cd02953 DsbDgamma DsbD gamma f 44.7 67 0.0015 21.4 4.9 53 5-59 15-77 (104)
190 cd02951 SoxW SoxW family; SoxW 41.0 80 0.0017 21.9 5.0 16 5-20 18-33 (125)
191 cd02994 PDI_a_TMX PDIa family, 35.0 1.3E+02 0.0029 19.7 5.5 52 5-60 20-77 (101)
192 cd02959 ERp19 Endoplasmic reti 31.8 1.8E+02 0.0039 20.2 5.9 53 5-59 23-81 (117)
193 cd03000 PDI_a_TMX3 PDIa family 31.2 1.6E+02 0.0035 19.5 5.6 52 5-59 19-77 (104)
194 cd03003 PDI_a_ERdj5_N PDIa fam 31.0 1E+02 0.0022 20.4 4.0 52 5-59 22-77 (101)
195 PF12290 DUF3802: Protein of u 31.0 1.9E+02 0.0041 20.3 6.5 84 69-162 9-97 (113)
196 cd02955 SSP411 TRX domain, SSP 30.8 2E+02 0.0043 20.4 6.1 61 5-68 19-97 (124)
197 PF04134 DUF393: Protein of un 30.5 1.7E+02 0.0038 19.8 5.3 69 7-78 1-77 (114)
198 cd02993 PDI_a_APS_reductase PD 30.1 1.8E+02 0.0038 19.6 5.9 53 5-59 25-83 (109)
199 PF11417 Inhibitor_G39P: Loade 30.0 1.5E+02 0.0033 18.9 5.2 36 67-104 5-42 (71)
200 PTZ00102 disulphide isomerase; 29.9 3.2E+02 0.0069 23.9 8.0 73 5-80 53-139 (477)
201 cd02957 Phd_like Phosducin (Ph 29.5 1.5E+02 0.0032 20.2 4.8 59 5-66 28-90 (113)
202 cd02962 TMX2 TMX2 family; comp 28.8 2.4E+02 0.0052 20.8 6.3 60 5-66 51-122 (152)
203 TIGR01068 thioredoxin thioredo 28.7 1.6E+02 0.0035 18.8 6.4 52 5-59 18-73 (101)
204 PF09413 DUF2007: Domain of un 27.2 70 0.0015 19.6 2.5 32 6-38 2-33 (67)
205 PF13728 TraF: F plasmid trans 26.9 1.9E+02 0.0042 22.7 5.5 52 5-59 124-188 (215)
206 PF00731 AIRC: AIR carboxylase 26.5 85 0.0018 23.3 3.1 34 12-46 12-45 (150)
207 cd02997 PDI_a_PDIR PDIa family 26.4 1.9E+02 0.0041 18.8 5.4 52 5-59 21-80 (104)
208 PHA02278 thioredoxin-like prot 26.0 2.2E+02 0.0047 19.3 6.8 57 5-64 18-84 (103)
209 cd03005 PDI_a_ERp46 PDIa famil 25.4 2E+02 0.0043 18.7 5.5 52 5-59 20-78 (102)
210 PF13098 Thioredoxin_2: Thiore 25.2 62 0.0013 21.8 2.2 20 5-24 9-28 (112)
211 cd03001 PDI_a_P5 PDIa family, 24.2 2.1E+02 0.0046 18.6 5.6 52 5-59 22-77 (103)
212 cd02954 DIM1 Dim1 family; Dim1 24.1 2.6E+02 0.0056 19.6 5.4 56 6-64 19-80 (114)
213 cd03004 PDI_a_ERdj5_C PDIa fam 24.0 2.2E+02 0.0048 18.7 5.4 52 5-59 23-78 (104)
214 cd04911 ACT_AKiii-YclM-BS_1 AC 23.9 1E+02 0.0022 19.9 2.8 25 12-37 14-38 (76)
215 COG3019 Predicted metal-bindin 23.6 1.3E+02 0.0029 22.0 3.5 67 4-79 27-104 (149)
216 cd02961 PDI_a_family Protein D 23.6 2E+02 0.0044 18.2 5.5 51 5-59 19-76 (101)
217 TIGR01162 purE phosphoribosyla 23.5 1.3E+02 0.0029 22.4 3.7 34 11-45 9-42 (156)
218 PF01323 DSBA: DSBA-like thior 23.5 1.3E+02 0.0029 22.4 3.9 35 4-39 1-40 (193)
219 cd02996 PDI_a_ERp44 PDIa famil 23.4 1.6E+02 0.0035 19.7 4.0 53 5-59 22-83 (108)
220 TIGR02681 phage_pRha phage reg 22.9 88 0.0019 21.7 2.5 25 55-79 2-27 (108)
221 PF11823 DUF3343: Protein of u 22.8 1.8E+02 0.0039 18.3 3.8 32 5-37 3-34 (73)
222 COG5515 Uncharacterized conser 22.4 87 0.0019 19.3 2.0 21 5-25 3-27 (70)
223 cd02948 TRX_NDPK TRX domain, T 21.2 2.6E+02 0.0056 18.5 7.3 55 5-63 21-82 (102)
224 PF03711 OKR_DC_1_C: Orn/Lys/A 20.6 31 0.00067 25.1 -0.2 38 40-79 76-113 (136)
225 cd01068 sensor_globin Globin d 20.5 2.3E+02 0.0049 20.2 4.5 23 186-208 34-56 (147)
226 cd02972 DsbA_family DsbA famil 20.4 1.1E+02 0.0024 19.4 2.6 22 5-26 1-22 (98)
227 cd02987 Phd_like_Phd Phosducin 20.3 3.8E+02 0.0083 20.1 6.6 58 6-66 88-149 (175)
228 PRK09266 hypothetical protein; 20.2 1.7E+02 0.0037 23.6 4.1 56 22-79 200-258 (266)
229 PRK13947 shikimate kinase; Pro 20.1 1.5E+02 0.0033 21.7 3.5 29 1-31 1-29 (171)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-41 Score=260.98 Aligned_cols=216 Identities=39% Similarity=0.671 Sum_probs=191.7
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcC-C
Q 042301 3 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWE-Q 81 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~-~ 81 (227)
+.++||+++.|||++|++++|.++|| +|+++.+|+.++++++++.||..+|||+|+|+|..|+||..|++|||+.++ +
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI-~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGI-PYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCC-ceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 45999999999999999999999999 999999999999999999996666999999999999999999999999999 6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHH
Q 042301 82 NPLLPRDPYQRAMARFWAKYSEELMAKAFMAL--VLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELA 159 (227)
Q Consensus 82 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~ 159 (227)
++++|+||.+||+++.|..+++..+....... ...++..+.+.+++...|+.||+.|.. +++|+ +|+++++.|++
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~f--gG~~~G~vDi~ 163 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGK-GKDFF--GGETIGFVDIA 163 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCC--CCCCcCHhhhh
Confidence 89999999999999999999998776665555 356688999999999999999999993 28999 99999999999
Q ss_pred HHHHHHHHH-HHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHHHHHHHHHHHHHHh
Q 042301 160 FGWILYWLP-VWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVYFRKVSEEFF 222 (227)
Q Consensus 160 l~~~l~~~~-~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (227)
+++.+.+.. ......+.+.....++|+|.+|.++|.+++++++++++.+...++++++++...
T Consensus 164 ~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~~ 227 (231)
T KOG0406|consen 164 IGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGSP 227 (231)
T ss_pred HHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhcc
Confidence 996665554 334443344444689999999999999999999999999999999999998643
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=2.4e-38 Score=249.71 Aligned_cols=195 Identities=22% Similarity=0.307 Sum_probs=168.1
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcCCCC
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNP 83 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~ 83 (227)
+++||+++.||+|++|+++|+++|| +|+.+.+++.+++++|+++||.| +||+|+++|.+|+||.||++||++++++..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl-~~e~~~v~~~~~~~~~~~~nP~g-~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGV-SVEIEQVEKDNLPQDLIDLNPYQ-SVPTLVDRELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCC-CCEEEeCCcccCCHHHHHhCCCC-CCCEEEECCEEeeCHHHHHHHHHHhCCCCC
Confidence 5899999999999999999999999 99999999888889999999998 999999999999999999999999998888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHH
Q 042301 84 LLPRDPYQRAMARFWAKYSEELMAKAFMALV-LKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGW 162 (227)
Q Consensus 84 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~ 162 (227)
|+|.++.+|+.+++|+.+++..+........ ..++..+...+.+.+.+..+|++|++ ++|+ +|+++|+||+++++
T Consensus 88 l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l--~G~~~t~AD~~l~~ 163 (211)
T PRK09481 88 LMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGE--KPYF--MSEEFSLVDCYLAP 163 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcc--cCCCccHHHHHHHH
Confidence 9999999999999999887765544333222 23345567778899999999999987 8999 99999999999999
Q ss_pred HHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHH
Q 042301 163 ILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQ 209 (227)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
.+.++. . .+.++. ...+|+|++|++++.+||++++++...++
T Consensus 164 ~~~~~~---~-~~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 164 LLWRLP---V-LGIELS-GPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred HHHHHH---h-cCCCCC-CCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 987763 2 244442 25799999999999999999999876543
No 3
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=223.19 Aligned_cols=194 Identities=26% Similarity=0.463 Sum_probs=170.8
Q ss_pred CcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC----CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 2 AKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF----NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 2 ~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~----~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
+.+++||.++.|.+++|||++|+.+|| +|+.+.+++. +...+|.++||++ +||+|++||.+|+||.||++||++
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~i-DYey~PvnLlk~~~q~~~ef~~iNPm~-kVP~L~i~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGI-DYEYKPVNLLKEEDQSDSEFKEINPME-KVPTLVIDGLTLTESLAIIEYLEE 80 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCC-CcceeehhhhcchhhhhhHHhhcCchh-hCCeEEECCEEeehHHHHHHHHHh
Confidence 357999999999999999999999999 9999999885 3566899999998 999999999999999999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc---hHHHHHHHHHHHHHHHHHHhhhcccCCcccccc
Q 042301 78 TWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMAL-----VLK---GEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEG 149 (227)
Q Consensus 78 ~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~ 149 (227)
++|+++|+|.|+..||.++++...+...+.+. ..+ +.. +.....+...+.+.+..||+.|..+.|.|. +
T Consensus 81 t~P~ppLLP~d~~KRA~~r~i~~~i~sgIQPl-QNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkyc--v 157 (217)
T KOG0868|consen 81 TYPDPPLLPKDPHKRAKARAISLLIASGIQPL-QNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYC--V 157 (217)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHhCCCcc-hhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcc--c
Confidence 99999999999999999999998888766543 222 222 233677888899999999999999889999 9
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCCh
Q 042301 150 ESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPAR 207 (227)
Q Consensus 150 G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 207 (227)
||++|+||+++.+.+... ..+ ..++ ..||.+.+..+.+.+.|.|+...++.
T Consensus 158 GDevtiADl~L~pqv~nA---~rf-~vdl---~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 158 GDEVTIADLCLPPQVYNA---NRF-HVDL---TPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred Cceeehhhhccchhhhhh---hhc-cccC---CcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 999999999999999876 333 6666 88999999999999999999987754
No 4
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=3.6e-35 Score=232.10 Aligned_cols=193 Identities=19% Similarity=0.250 Sum_probs=159.9
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
|. |+||+++.||+++||+++|.++|| +|+.+.++.. +.+++++++||.| +||+|++||.+|+||.+|++||++
T Consensus 1 ~~--~kLy~~~~s~~~~rv~~~L~e~gi-~ye~~~v~~~~~~~~~~~~~~~nP~g-~vP~L~~~g~~l~ES~aI~~YL~~ 76 (214)
T PLN02473 1 MV--VKVYGQIKAANPQRVLLCFLEKGI-EFEVIHVDLDKLEQKKPEHLLRQPFG-QVPAIEDGDLKLFESRAIARYYAT 76 (214)
T ss_pred Cc--eEEecCCCCCchHHHHHHHHHcCC-CceEEEecCcccccCCHHHHhhCCCC-CCCeEEECCEEEEehHHHHHHHHH
Confidence 54 899999999999999999999999 9999988875 5788999999999 999999999999999999999999
Q ss_pred hcCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----H-hc-------chHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042301 78 TWEQ--NPLLPRDPYQRAMARFWAKYSEELMAKAFMA----L-VL-------KGEAKEKNAKEFAEGLEKIEGEFKGKSG 143 (227)
Q Consensus 78 ~~~~--~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~----~-~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~ 143 (227)
++++ .+|+|.++.+++.+++|+.+..+.+...... . +. ..+..+...+++.+.++.+|+.|++ +
T Consensus 77 ~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~ 154 (214)
T PLN02473 77 KYADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLAT--N 154 (214)
T ss_pred HcCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhcc--C
Confidence 9964 3699999999999999999887755432211 1 21 1133455678899999999999987 7
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCC
Q 042301 144 LLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLP 205 (227)
Q Consensus 144 ~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~ 205 (227)
+|+ +|+++|+||+++++.+.++...... ..+ ..++|+|.+|++++.+||++++++.
T Consensus 155 ~~l--~Gd~~t~ADi~~~~~~~~~~~~~~~--~~~--~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 155 RYL--GGDEFTLADLTHMPGMRYIMNETSL--SGL--VTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred Ccc--cCCCCCHHHHHHHHHHHHHHhcccc--HHH--HhcCHHHHHHHHHHhcChhhHHHHH
Confidence 899 9999999999999998876321111 122 2679999999999999999999764
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=5e-35 Score=231.32 Aligned_cols=193 Identities=20% Similarity=0.176 Sum_probs=160.1
Q ss_pred CC-cceEEeccC--CChHHHHHHHHHHHcCCCCceeEecCCCC---CChhhhhhCCCCCccceEEeCCeeechhHHHHHH
Q 042301 1 MA-KEVTLLGFW--ASPFVFRVKVALQQKGVVDYEYIEEDIFN---KSPRLLELNPVYKKVPVFIHGEKVVNESLIILEY 74 (227)
Q Consensus 1 M~-~~~~Ly~~~--~sp~~~~v~~~l~~~gi~~y~~~~v~~~~---~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~y 74 (227)
|+ ++++||+.+ .||+|++|+++|.++|| +|+.+.+++.. ..++|+++||.| +||+|++||.+|+||.+|++|
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi-~~e~~~v~~~~~~~~~~~~~~~nP~g-~VP~L~~~~~~l~ES~aI~~Y 78 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGL-PFELKTVDLDAGEHLQPTYQGYSLTR-RVPTLQHDDFELSESSAIAEY 78 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCC-CCeEEEeCCCCccccCHHHHhcCCCC-CCCEEEECCEEEecHHHHHHH
Confidence 55 578999975 79999999999999999 99999998753 568999999999 999999999999999999999
Q ss_pred HhhhcCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----hc---chHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042301 75 IDETWEQNP---LLPRDPYQRAMARFWAKYSEELMAKAFMAL-----VL---KGEAKEKNAKEFAEGLEKIEGEFKGKSG 143 (227)
Q Consensus 75 L~~~~~~~~---l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~ 143 (227)
|++++++.. |+|.++.+++++++|+.+.+..+....... +. .....+...+.+.+.++.+|++|+++ +
T Consensus 79 L~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~ 157 (214)
T PRK15113 79 LEERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG-Q 157 (214)
T ss_pred HHHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-C
Confidence 999998655 999999999999999999877665433211 11 12234566778999999999999852 5
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChH
Q 042301 144 LLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARD 208 (227)
Q Consensus 144 ~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
+|+ +|+ +|+|||++++.+.++. .. +.++ .|+|.+|++++.+||+|++++++.+
T Consensus 158 ~~l--~G~-~TlADi~l~~~l~~~~---~~-~~~~-----~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 158 PNL--FGE-WCIADTDLALMLNRLV---LH-GDEV-----PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred CEe--eCC-ccHHHHHHHHHHHHHH---Hc-CCCC-----CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 799 996 9999999999998762 22 4333 2999999999999999999887554
No 6
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=4.6e-34 Score=225.05 Aligned_cols=191 Identities=25% Similarity=0.450 Sum_probs=158.2
Q ss_pred EEeccCCChHHHHHHHHHHHcCCCCceeEecCCC----CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcCC
Q 042301 6 TLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF----NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQ 81 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~----~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~ 81 (227)
+||+++.||++++|+++|.++|| +|+.+.+++. +..++++++||.| +||+|+++|.+|+||.+|++||++++++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi-~~~~~~v~~~~~~~~~~~~~~~~nP~g-~vP~L~~~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGI-DYEYVPVNLLRDGEQRSPEFLALNPQG-LVPTLDIDGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCC-CceEEecccccccccCChhhhhcCCCC-cCCEEEECCEEeecHHHHHHHHHHhCCC
Confidence 48999999999999999999999 9999988862 3568899999999 9999999999999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHhc-----chH-HHHHHHHHHHHHHHHHHhhhcccCCccccccCC
Q 042301 82 NPLLPRDPYQRAMARFWAKYSEELMAKA----FMALVL-----KGE-AKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGES 151 (227)
Q Consensus 82 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~-----~~~-~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~ 151 (227)
..|+|.++.+++++++|..+....+... +...+. ..+ ..+...+.+.+.|+.||++|++++++|+ +|+
T Consensus 79 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l--~G~ 156 (210)
T TIGR01262 79 PPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFC--VGD 156 (210)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEe--eCC
Confidence 7899999999999999998876544432 111111 112 2344556799999999999987556799 999
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCCh
Q 042301 152 NIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPAR 207 (227)
Q Consensus 152 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 207 (227)
++|+|||++++++.++. .. +.++ .+||+|++|+++|.+||+++++....
T Consensus 157 ~~T~ADi~~~~~l~~~~---~~-~~~~---~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 157 TPTLADLCLVPQVYNAE---RF-GVDL---TPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred CCCHHHHHHHHHHHHHH---Hc-CCCc---ccchHHHHHHHHHhcCHHHHHhCccc
Confidence 99999999999998763 22 3333 67999999999999999999988643
No 7
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=6.6e-34 Score=224.96 Aligned_cols=193 Identities=21% Similarity=0.309 Sum_probs=157.4
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
|+ +|||+.+.| +++||+++|.++|| +|+.+.+++. +.+++|+++||.| +||+|+++|.+|+||.+|++||++
T Consensus 1 ~~--~~ly~~~~~-~~~rv~~~L~e~gl-~~e~~~v~~~~~~~~~~~~~~~nP~g-~vP~L~~~~~~l~ES~aI~~YL~~ 75 (215)
T PLN02395 1 MV--LKVYGPAFA-SPKRALVTLIEKGV-EFETVPVDLMKGEHKQPEYLALQPFG-VVPVIVDGDYKIFESRAIMRYYAE 75 (215)
T ss_pred Ce--EEEEcCCcC-cHHHHHHHHHHcCC-CceEEEeccccCCcCCHHHHhhCCCC-CCCEEEECCEEEEcHHHHHHHHHH
Confidence 66 899997654 79999999999999 9999998875 5678999999998 999999999999999999999999
Q ss_pred hcCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----hc-------chHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042301 78 TWEQ--NPLLPRDPYQRAMARFWAKYSEELMAKAFMAL-----VL-------KGEAKEKNAKEFAEGLEKIEGEFKGKSG 143 (227)
Q Consensus 78 ~~~~--~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~ 143 (227)
++++ +.|+|.++.+++.+++|+.+.+..+.+.+... +. ..+..+...+.+.+.++.||+.|++ +
T Consensus 76 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~ 153 (215)
T PLN02395 76 KYRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSK--S 153 (215)
T ss_pred HcCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcC--C
Confidence 9964 36999999999999999998776554443222 11 1223456678899999999999987 7
Q ss_pred ccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCC
Q 042301 144 LLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPA 206 (227)
Q Consensus 144 ~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 206 (227)
+|+ +|+++|+||+++++++.++...... ...+ ..+|+|.+|++++.++|++++++..
T Consensus 154 ~~l--~G~~~s~ADi~l~~~~~~~~~~~~~-~~~~---~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 154 KYL--AGDFVSLADLAHLPFTEYLVGPIGK-AYLI---KDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred ccc--cCCCcCHHHHHHHHHHHHHhcccch-hhhh---ccCchHHHHHHHHHcChHHHHHHHH
Confidence 899 9999999999999988765211010 1112 6799999999999999999998653
No 8
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=3.9e-34 Score=223.99 Aligned_cols=188 Identities=16% Similarity=0.317 Sum_probs=156.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC----CCChhhhhhCCCCCccceEE-eCCeeechhHHHHHHHhhhc
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF----NKSPRLLELNPVYKKVPVFI-HGEKVVNESLIILEYIDETW 79 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~----~~~~~~~~~np~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~ 79 (227)
|+||+.+.| ++++++++|+++|| +|+.+.+++. ..+++|+++||.| +||+|+ +||.+|+||.+|++||++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi-~~e~~~v~~~~~~~~~~~~~~~~nP~g-~vPvL~~~~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGL-DFTLVSVDLAKKRLENGDDYLAINPKG-QVPALLLDDGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCC-CceEEEeecccccccCChHHHHhCcCC-CCCeEEeCCCcEeecHHHHHHHHHHhC
Confidence 579998865 79999999999999 9999999875 2458899999999 999998 57899999999999999999
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcch
Q 042301 80 EQNPLL-PRDPYQRAMARFWAKYSEELMAKAFMALVLK---GEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGY 155 (227)
Q Consensus 80 ~~~~l~-p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~ 155 (227)
+++.++ |.++.+++.+++|+.+..+.+.+.+...+.. ++..+...+.+.+.++.+|+.|++ ++|+ +|+++|+
T Consensus 78 ~~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~G~~~s~ 153 (201)
T PRK10542 78 PDRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALAD--EQWI--CGQRFTI 153 (201)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcC--CCee--eCCCCcH
Confidence 877666 5678899999999998877676654444321 223355677899999999999987 8899 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCC
Q 042301 156 LELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPA 206 (227)
Q Consensus 156 aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 206 (227)
|||++++++.+.. .. +.++ ..+|+|.+|++++.++|++++++.+
T Consensus 154 ADi~l~~~~~~~~---~~-~~~~---~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 154 ADAYLFTVLRWAY---AV-KLNL---EGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HhHHHHHHHHHhh---cc-CCCc---ccchHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999988762 22 4433 6799999999999999999998754
No 9
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=4.8e-34 Score=225.83 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=152.7
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEe-----CC--eeechhHHHHH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIH-----GE--KVVNESLIILE 73 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~-----~~--~~i~eS~~I~~ 73 (227)
++|||+.+ +|++++|+++|+++|| +|+.+.+++. +..++|+++||.| +||+|++ || .+|+||.||++
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl-~~e~~~v~~~~~~~~~~~~~~iNP~g-kVP~L~~~~~~d~g~~~~L~ES~AI~~ 77 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAEL-DYRLIKVDLGKGGQFRPEFLRISPNN-KIPAIVDHSPADGGEPLSLFESGAILL 77 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCC-CcEEEEecCcccccCCHHHHhhCcCC-CCCEEEeCCCCCCCCceeEEcHHHHHH
Confidence 37899887 7999999999999999 9999999875 3478999999999 9999997 45 47999999999
Q ss_pred HHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hc------chHHHHHHHHHHHHHHHHHHhhhcccCCcc
Q 042301 74 YIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMAL--VL------KGEAKEKNAKEFAEGLEKIEGEFKGKSGLL 145 (227)
Q Consensus 74 yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~l~~le~~L~~~~~~f 145 (227)
||+++++ .+.|.++.+|+.+++|+.+....+.+.+... +. .....+.....+.+.+..+|++|++ ++|
T Consensus 78 YL~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~ 153 (215)
T PRK13972 78 YLAEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLEN--SPW 153 (215)
T ss_pred HHHHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhcc--Ccc
Confidence 9999985 3778899999999999999877665543221 11 1234556677899999999999987 899
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCC
Q 042301 146 FAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPA 206 (227)
Q Consensus 146 l~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 206 (227)
+ +|+++|+|||++++.+.... .. +.++ ..+|+|.+|++++.+||++++++..
T Consensus 154 l--~Gd~~t~ADi~l~~~~~~~~---~~-~~~~---~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 154 L--GGENYSIADIACWPWVNAWT---RQ-RIDL---AMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred c--cCCCCCHHHHHHHHHHHHHh---hc-CCcc---hhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 9 99999999999988774431 11 3333 7799999999999999999987643
No 10
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=2.8e-33 Score=219.40 Aligned_cols=191 Identities=20% Similarity=0.367 Sum_probs=157.4
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEE-eCCeeechhHHHHHHHhhhcCCCC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI-HGEKVVNESLIILEYIDETWEQNP 83 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~ 83 (227)
++||+++.||++++|+++|+++|| +|+.+.++.....+++.++||.| +||+|+ ++|.+|+||.+|++||++.+++..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv-~ye~~~~~~~~~~~~~~~~nP~g-~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~ 78 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGI-TFEFVNELPYNADNGVAQYNPLG-KVPALVTEEGECWFDSPIIAEYIELLNVAPA 78 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCC-CCeEEecCCCCCchhhhhcCCcc-CCCeEEeCCCCeeecHHHHHHHHHHhCCCCC
Confidence 579999999999999999999999 99999888776677888999999 999998 578999999999999999998778
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc-----chHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcch
Q 042301 84 LLPRDPYQRAMARFWAKYSEELMAKAFMAL---VL-----KGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGY 155 (227)
Q Consensus 84 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~ 155 (227)
|+|.++.+++.+++|..+.++.+....... .. .....+...+.+.+.|+.+|++|.+ ++ + +|+++|+
T Consensus 79 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~-l--~Gd~~t~ 153 (202)
T PRK10357 79 MLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD--GT-L--KTDTVNL 153 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc--Cc-c--cCCCcCH
Confidence 999999999999999888766444332222 11 1223455678899999999999987 67 9 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCC
Q 042301 156 LELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPA 206 (227)
Q Consensus 156 aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 206 (227)
||+++++.+.++... .. +... ..++|++.+|++++.+||+|+++.+.
T Consensus 154 ADi~l~~~l~~~~~~-~~-~~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 154 ATIAIACAVGYLNFR-RV-APGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHHHHHHhc-cc-Ccch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 999999999876331 11 1111 15699999999999999999998765
No 11
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=9.3e-33 Score=219.25 Aligned_cols=196 Identities=18% Similarity=0.249 Sum_probs=159.8
Q ss_pred cCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcCC---CCCCC
Q 042301 10 FWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQ---NPLLP 86 (227)
Q Consensus 10 ~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~---~~l~p 86 (227)
...||+|++|+++|.++|| +|+.+.+++.+++++|+++||.| +||+|+++|.+|+||.+|++||+++++. +.+.|
T Consensus 16 ~~~cp~~~rv~i~L~ekgi-~~e~~~vd~~~~~~~fl~inP~g-~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGV-VFNVTTVDLKRKPEDLQNLAPGT-HPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCCHhHHHHHHHHHHcCC-CcEEEEECCCCCCHHHHHHCcCC-CCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 3679999999999999999 99999999998899999999998 9999999999999999999999999964 44666
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh-c-chHHHHHHHHHHHHHHHHHHhhhcc----------------cCCccccc
Q 042301 87 RDPYQRAMARFWAKYSEELMAKAFMALV-L-KGEAKEKNAKEFAEGLEKIEGEFKG----------------KSGLLFAE 148 (227)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~~fl~~ 148 (227)
.++..++... .+...+..++ . .++..+...+.+.+.|+.||++|.+ .+++|+
T Consensus 94 ~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~-- 163 (236)
T TIGR00862 94 KHPESNTAGL--------DIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFL-- 163 (236)
T ss_pred CCHHHHHHHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcc--
Confidence 6765554321 1222222221 1 2334455667799999999999973 137999
Q ss_pred cCCCcchHHHHHHHHHHHHHHH-hhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHHHHHHHHHHHH
Q 042301 149 GESNIGYLELAFGWILYWLPVW-EEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVYFRKVSE 219 (227)
Q Consensus 149 ~G~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (227)
.|+++|+|||++++.+.++... ....++++ ..++|+|.+|++++.++++|+++++..+++...+.+..+
T Consensus 164 ~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~~ 233 (236)
T TIGR00862 164 DGDELTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVAK 233 (236)
T ss_pred cCCccchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHhh
Confidence 9999999999999999998654 34447776 488999999999999999999999999998888877643
No 12
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-33 Score=218.78 Aligned_cols=184 Identities=27% Similarity=0.480 Sum_probs=160.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC--CCChhhhhhCCCCCccceEEeCCe-eechhHHHHHHHhhhcCC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF--NKSPRLLELNPVYKKVPVFIHGEK-VVNESLIILEYIDETWEQ 81 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~--~~~~~~~~~np~~~~vP~L~~~~~-~i~eS~~I~~yL~~~~~~ 81 (227)
++||+.+.||++.+|+++|.++|| +|+.+.+++. +.+++|+++||.| +||+|++++. +|+||.+|++||++++|+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~-~ye~~~v~~~~~~~~~~~~~~nP~g-kVPvL~~~~~~~l~ES~AI~~YL~~~~~~ 78 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGL-PYEIVLVDLDAEQKPPDFLALNPLG-KVPALVDDDGEVLTESGAILEYLAERYPG 78 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCC-CceEEEeCcccccCCHHHHhcCCCC-CCCEEeeCCCCeeecHHHHHHHHHhhCCC
Confidence 579999999999999999999999 9999999987 5889999999999 9999998765 899999999999999987
Q ss_pred CCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHh-c--------chHHHHHHHHHHHHHHHHHHhhhcccCCcccccc
Q 042301 82 NPLLPRDPY---QRAMARFWAKYSEELMAKAFMALV-L--------KGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEG 149 (227)
Q Consensus 82 ~~l~p~~~~---~~a~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~ 149 (227)
++|+|.++. +|+....|+.+....+.+.+.... . .+...+.....+...++.+|+.|+. ++|+ +
T Consensus 79 ~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~ 154 (211)
T COG0625 79 PPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLAD--GPYL--A 154 (211)
T ss_pred CCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhcc--CCcc--c
Confidence 669998885 788888999998777777766651 1 2455677788999999999999999 9999 9
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhh
Q 042301 150 ESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIK 201 (227)
Q Consensus 150 G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 201 (227)
|+++|+||+++++.+.++ ... +.++ ..+|++.+|++++.++|+++
T Consensus 155 G~~~tiAD~~~~~~~~~~---~~~-~~~~---~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 155 GDRFTIADIALAPLLWRL---ALL-GEEL---ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CCCCCHHHHHHHHHHHHh---hhc-Cccc---ccChHHHHHHHHHHcCCchh
Confidence 999999999999999885 222 3333 67999999999999999965
No 13
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=4.4e-32 Score=220.56 Aligned_cols=194 Identities=18% Similarity=0.227 Sum_probs=153.7
Q ss_pred ceEEeccCCChHHHHHHHHHHHc------CCCCceeEecCCC---CCChhhhhhCCCCCccceEEeC----CeeechhHH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQK------GVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHG----EKVVNESLI 70 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~------gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~----~~~i~eS~~ 70 (227)
+|+||+.+ ||+++||+++|.++ |+ +|+.+.+++. +.+++|+++||.| +||+|+++ +.+|+||.+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl-~ye~~~v~~~~~~~~~~e~~~iNP~G-kVP~Lv~~dg~~~~~L~ES~A 120 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGA-EYDAWLIRIGEGDQFSSGFVEINPNS-KIPALLDRSGNPPIRVFESGA 120 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCC-ceEEEEecCccccccCHHHHhhCCCC-CCCEEEeCCCCCCeEEEcHHH
Confidence 58999875 99999999999997 99 9999998875 4578999999998 99999974 368999999
Q ss_pred HHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHh--cc---hHHHHHHHHHHHHHHHHHHhhhccc
Q 042301 71 ILEYIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFM----ALV--LK---GEAKEKNAKEFAEGLEKIEGEFKGK 141 (227)
Q Consensus 71 I~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~----~~~--~~---~~~~~~~~~~~~~~l~~le~~L~~~ 141 (227)
|++||+++++ .|+|.++.+++.+++|+.+....+ .... ..+ .. ....+....++.+.|+.||++|.+
T Consensus 121 Il~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~- 196 (264)
T PRK11752 121 ILLYLAEKFG--AFLPKDLAARTETLNWLFWQQGSA-PFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAE- 196 (264)
T ss_pred HHHHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 9999999987 499999999999999999876643 2111 111 11 123455567789999999999987
Q ss_pred CCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCCh
Q 042301 142 SGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPAR 207 (227)
Q Consensus 142 ~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~ 207 (227)
++|+ +|+++|+|||++++.+.++............+...+|++.+|+++|.+||+++++....
T Consensus 197 -~~fl--~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 197 -HEYI--AGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred -CCCC--CCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 7899 99999999999999887763311110111111267999999999999999999987654
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=4.8e-32 Score=212.87 Aligned_cols=192 Identities=17% Similarity=0.206 Sum_probs=145.9
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhh--------hhCCCCCccceEEeCCeeechhHHHH
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLL--------ELNPVYKKVPVFIHGEKVVNESLIIL 72 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~--------~~np~~~~vP~L~~~~~~i~eS~~I~ 72 (227)
|+++++||+++.++++++||++|+++|| +|+.+.++. .. +++. ..||.| +||+|++||.+|+||.||+
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi-~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~g-~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGI-EYTDKRFGE-NG-DAFIEFKNFKKEKDTPFE-QVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCC-CeEEEeccc-cc-hHHHHHHhccccCCCCCC-CCCEEEECCEEEecHHHHH
Confidence 7778999999999999999999999999 999987653 22 2333 479999 9999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCC
Q 042301 73 EYIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMAL-VLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGES 151 (227)
Q Consensus 73 ~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~ 151 (227)
+||+++++ +.+.+..+++.+........+ +...+... ...++..+...+.+.+.+..||+.|.+++++|+ +|+
T Consensus 77 ~YLa~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l--~Gd 150 (205)
T PTZ00057 77 RYLSKKYK---ICGESELNEFYADMIFCGVQD-IHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYF--VGD 150 (205)
T ss_pred HHHHHHcC---CCCCCHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCee--eCC
Confidence 99999997 445555444444443332222 32222221 112223345567899999999999986445899 999
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChH
Q 042301 152 NIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARD 208 (227)
Q Consensus 152 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
++|+||+++++.+.++.. ..+.++ .+||+|.+|++++.++|++++++.++.
T Consensus 151 ~~T~AD~~l~~~~~~~~~---~~~~~l---~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 151 NLTYADLAVFNLYDDIET---KYPNSL---KNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred cccHHHHHHHHHHHHHHH---hChhhh---ccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 999999999998877632 124344 789999999999999999999987654
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=6.5e-32 Score=213.30 Aligned_cols=185 Identities=21% Similarity=0.347 Sum_probs=146.4
Q ss_pred cCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcCCCCCCCCCH
Q 042301 10 FWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDP 89 (227)
Q Consensus 10 ~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~l~p~~~ 89 (227)
+..||+|+||+++|+++|+ +|+.+.+++.+++++|+++||.| +||+|++||.+|+||.+|++||++++++..+ .++
T Consensus 17 ~~~~p~~~rv~~~L~e~gl-~~e~~~v~~~~~~~~~l~inP~G-~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~~ 92 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSL-TYKIHLINLSDKPQWFLDISPQG-KVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KTP 92 (213)
T ss_pred CCCCcchHHHHHHHHHcCC-CCeEEEeCcccCCHHHHHhCCCC-CCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CCH
Confidence 4569999999999999999 99999999988889999999998 9999999999999999999999999986555 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHH
Q 042301 90 YQRAMARFWAKYSEELMAKAFMALVLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPV 169 (227)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~ 169 (227)
.+++.+...+ ...+..++......+...+.+.+.|+.+|+.|++++++|+ +|+++|+||+++++++.++..
T Consensus 93 ~~~a~i~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl--~Gd~~T~ADi~l~~~~~~l~~ 163 (213)
T PLN02378 93 AEFASVGSNI-------FGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFI--AGERVSAVDLSLAPKLYHLQV 163 (213)
T ss_pred HHHHHHHHHH-------HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCc--CCCCCchhhHHHHHHHHHHHH
Confidence 6676654422 2222222222122234456788899999999985447999 999999999999999988754
Q ss_pred Hh-hhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHH
Q 042301 170 WE-EAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQ 209 (227)
Q Consensus 170 ~~-~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
.. ...+.+. ...+|+|.+|+++|.+||++++++.....
T Consensus 164 ~~~~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~ 202 (213)
T PLN02378 164 ALGHFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKY 202 (213)
T ss_pred HHHHhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHH
Confidence 32 2223333 26799999999999999999999887764
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=3.5e-31 Score=214.46 Aligned_cols=186 Identities=21% Similarity=0.350 Sum_probs=148.3
Q ss_pred CCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcCCCCCCCCCHH
Q 042301 11 WASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPY 90 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~l~p~~~~ 90 (227)
..||+|+||+++|+++|| +|+.+.+++.+++++|+++||.| +||+|+++|..|+||.+|++||++++++..+. ++.
T Consensus 71 g~cp~s~rV~i~L~ekgi-~ye~~~vdl~~~~~~fl~iNP~G-kVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~ 146 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHL-PYDMKLVDLTNKPEWFLKISPEG-KVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPP 146 (265)
T ss_pred CCCcHHHHHHHHHHHcCC-CCEEEEeCcCcCCHHHHhhCCCC-CCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHH
Confidence 349999999999999999 99999999988899999999998 99999999999999999999999999876664 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMALVLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVW 170 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~ 170 (227)
+++.+..++. ..+..++......+...+.+.+.++.||+.|+++ ++|+ +|+++|+|||++++.+.++...
T Consensus 147 era~i~~~l~-------~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~-g~yl--~Gd~~SlADi~l~p~L~~l~~~ 216 (265)
T PLN02817 147 EKASVGSKIF-------STFIGFLKSKDPGDGTEQALLDELTSFDDYIKEN-GPFI--NGEKISAADLSLGPKLYHLEIA 216 (265)
T ss_pred HHHHHHHHHH-------HHHHHHhccCCcchHHHHHHHHHHHHHHHHHhcC-CCee--CCCCCCHHHHHHHHHHHHHHHH
Confidence 8887766432 2222222212112233467788899999999853 6899 9999999999999999887543
Q ss_pred h-hhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHHHHH
Q 042301 171 E-EAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLV 212 (227)
Q Consensus 171 ~-~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~ 212 (227)
. ...++++ ...+|+|.+|++++.++|+|+++.+..+++.+
T Consensus 217 ~~~~~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~ 257 (265)
T PLN02817 217 LGHYKNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVIA 257 (265)
T ss_pred HHHhcCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHHH
Confidence 2 2334444 37899999999999999999999987665444
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.3e-30 Score=203.13 Aligned_cols=196 Identities=23% Similarity=0.393 Sum_probs=167.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcC
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWE 80 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~ 80 (227)
.++||+++.||.+++|.+++.++|+ +|+.+.++.. +.+++|+++||.| +||+|+++|..++||.||+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l-~~e~~~v~~~~ge~~~pefl~~nP~~-kVP~l~d~~~~l~eS~AI~~Yl~~ky~ 79 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGL-EVELKPVDLVKGEQKSPEFLKLNPLG-KVPALEDGGLTLWESHAILRYLAEKYG 79 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCC-ceeEEEeeccccccCCHHHHhcCcCC-CCCeEecCCeEEeeHHHHHHHHHHHcC
Confidence 3899999999999999999999999 9999977664 7999999999999 999999999999999999999999995
Q ss_pred -C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHh--------cchHHHHHHHHHHHHHHHHHHhhhcccCCccccc
Q 042301 81 -Q-NPLLPRDPYQRAMARFWAKYSEELMAKAFM--ALV--------LKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAE 148 (227)
Q Consensus 81 -~-~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~ 148 (227)
. ..++|.+..+|+.+++|+.+..+.+.+... ..+ ......+....++.+.++.+|..|.+ +.|+
T Consensus 80 ~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~yl-- 155 (226)
T KOG0867|consen 80 PLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKT--QVYL-- 155 (226)
T ss_pred CCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHcc--CCcc--
Confidence 3 349999999999999999998887777632 221 14566788899999999999999999 9999
Q ss_pred cCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHH
Q 042301 149 GESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQ 209 (227)
Q Consensus 149 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~ 209 (227)
.|+++|+||+.+.+.+..+.. ....... ..++|++.+|++++.++|++++.......
T Consensus 156 ~g~~~tlADl~~~~~~~~~~~--~~~~~~~--~~~~p~v~~W~~~~~~~P~~~e~~~~~~~ 212 (226)
T KOG0867|consen 156 AGDQLTLADLSLASTLSQFQG--KFATEKD--FEKYPKVARWYERIQKRPAYEEANEKGAA 212 (226)
T ss_pred cCCcccHHHHHHhhHHHHHhH--hhhhhhh--hhhChHHHHHHHHHHhCccHHHHHHHHHH
Confidence 999999999999999988732 1111111 48899999999999999998887654443
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.96 E-value=3.4e-29 Score=197.26 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=136.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEE-eCCeeechhHHHHHHHhhhcCCCC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI-HGEKVVNESLIILEYIDETWEQNP 83 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~ 83 (227)
|+||++..||+|+||+++|+++|| +|+.+.++.... ..-...||.| +||+|+ ++|..|+||.+|++||+++|+++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi-~y~~~~~~~~~~-~~~~~~~p~~-~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~ 77 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNI-PVELIVLANDDE-ATPIRMIGQK-QVPILQKDDGSYMPESLDIVHYIDELDGKPL 77 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCC-CeEEEEcCCCch-hhHHHhcCCc-ccceEEecCCeEecCHHHHHHHHHHhCCCcc
Confidence 579999999999999999999999 999988865432 2225789998 999995 788999999999999999998654
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--------chH---------------------HHHHHHHHHHHHHHHH
Q 042301 84 LLPRDPYQRAMARFWAKYSEELMAKAFMALVL--------KGE---------------------AKEKNAKEFAEGLEKI 134 (227)
Q Consensus 84 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--------~~~---------------------~~~~~~~~~~~~l~~l 134 (227)
+ +. .+++.++.|+.+....+...+...+. ... ..+...+.+.+.|+.+
T Consensus 78 l-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (210)
T PRK10387 78 L-TG--KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRAL 154 (210)
T ss_pred C-CC--cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHH
Confidence 4 31 25778888888776555433322110 000 1135577899999999
Q ss_pred HhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhh
Q 042301 135 EGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLI 200 (227)
Q Consensus 135 e~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 200 (227)
|++|+ ++|+ +|+++|+||+++++.+.++.. ..+. ..+|+|.+|++||.+||.+
T Consensus 155 e~~L~---~~~l--~G~~~s~ADi~l~~~l~~~~~---~~~~-----~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 155 DPLIV---KPNA--VNGELSTDDIHLFPILRNLTL---VKGI-----EWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHhc---Cccc--cCCCCCHHHHHHHHHHhccee---ecCC-----CCCHHHHHHHHHHHHHhCC
Confidence 99995 3899 999999999999999988732 2122 2369999999999999875
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.95 E-value=7.5e-27 Score=183.85 Aligned_cols=175 Identities=15% Similarity=0.184 Sum_probs=132.1
Q ss_pred EEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEE-eCCeeechhHHHHHHHhhhcCCCCC
Q 042301 6 TLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI-HGEKVVNESLIILEYIDETWEQNPL 84 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~l 84 (227)
+||++..||+|+|||++|.++|+ +|+.+.++... .....+.||.| +||+|+ +||..|+||.+|++||+++|+.+.+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl-~~e~~~~~~~~-~~~~~~~np~g-~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~ 77 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNI-PVEKHVLLNDD-EETPIRMIGAK-QVPILQKDDGRAMPESLDIVAYFDKLDGEPLL 77 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCC-CeEEEECCCCc-chhHHHhcCCC-CcceEEeeCCeEeccHHHHHHHHHHhCCCccC
Confidence 58999999999999999999999 99998775432 22347899998 999998 7889999999999999999976434
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------chHH-----------HHHHHHHHHHHHHHHH
Q 042301 85 LPRDPYQRAMARFWAKYSEELMAKAFMALVL------------------KGEA-----------KEKNAKEFAEGLEKIE 135 (227)
Q Consensus 85 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------------~~~~-----------~~~~~~~~~~~l~~le 135 (227)
.|. .++.++.|+.+....+...+...+. ..+. .+.....+.+.|+.+|
T Consensus 78 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le 154 (209)
T TIGR02182 78 TGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELD 154 (209)
T ss_pred CCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHH
Confidence 332 4556677776655544333211110 0000 1456678999999999
Q ss_pred hhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCc-hHHHHHHHhhcchhh
Q 042301 136 GEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFP-VITEWSTKFVNHPLI 200 (227)
Q Consensus 136 ~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p-~l~~w~~~~~~~~~~ 200 (227)
++|++ ++|+ +|+ +|+||+++++.+.++. ...+. .+| +|.+|++||.+++.+
T Consensus 155 ~~L~~--~~~l--~g~-~TiADi~l~~~l~~~~---~~~~~------~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 155 KLIDG--PNAV--NGE-LSEDDILVFPLLRNLT---LVAGI------NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHhC--cccc--CCC-CCHHHHHHHHHhcCee---eecCC------CCChHHHHHHHHHHHHhCC
Confidence 99998 8999 874 9999999999998772 22121 256 999999999998764
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.4e-26 Score=176.05 Aligned_cols=195 Identities=16% Similarity=0.168 Sum_probs=160.3
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcC
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWE 80 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~ 80 (227)
|. .++|+++....++..+|++++..|+ +|+.+.++..+..+......|+| ++|+|..||..|.||.||++||+++++
T Consensus 1 m~-~ykL~Yf~~RG~ae~iR~lf~~a~v-~fEd~r~~~~~~w~~~K~~~pfg-qlP~l~vDg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 1 MP-PYKLTYFNIRGLAEPIRLLFAYAGV-SFEDKRITMEDAWEELKDKMPFG-QLPVLEVDGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred CC-ceEEEecCcchhHHHHHHHHHhcCC-CcceeeeccccchhhhcccCCCC-CCCEEeECCEeeccHHHHHHHHHHHhC
Confidence 55 7999999999999999999999999 99999988765445556668999 999999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---ch---HHHH-HHHHHHHHHHHHHHhhhcccCCccccccCCCc
Q 042301 81 QNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVL---KG---EAKE-KNAKEFAEGLEKIEGEFKGKSGLLFAEGESNI 153 (227)
Q Consensus 81 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~-~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~ 153 (227)
|.++++.+.+.++.+.+...+.....+...+. .+ ...+ .........+..+++.|..+++.|+ +|+++
T Consensus 78 ---l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgfl--vGd~l 152 (206)
T KOG1695|consen 78 ---LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFL--VGDKL 152 (206)
T ss_pred ---cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCee--ecCcc
Confidence 99999999999999999888844332333311 11 1122 5666788899999999997667899 99999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChH
Q 042301 154 GYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARD 208 (227)
Q Consensus 154 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
|+||+.++..+..+... ..... ...+|+|+++.+++.++|.+++++.++.
T Consensus 153 T~aDl~i~e~l~~l~~~---~~~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 153 TWADLVIAEHLDTLEEL---LDPSA--LDHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred cHHHHHHHHHHHHHHHh---cCchh--hccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 99999999999887332 23333 2678999999999999999999887653
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.94 E-value=1e-25 Score=174.51 Aligned_cols=208 Identities=18% Similarity=0.277 Sum_probs=151.5
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcC
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWE 80 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~ 80 (227)
.+.||+++.|-.+|+||++++++|| +|+...|++. +..++|..+||.| .||||++|..+|.|+..|++|++++|.
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~i-d~~~y~V~l~~geh~epwFmrlNp~g-evPVl~~g~~II~d~tqIIdYvErtf~ 103 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGI-DCEEYDVSLPQGEHKEPWFMRLNPGG-EVPVLIHGDNIISDYTQIIDYVERTFT 103 (325)
T ss_pred cceeeecCcccccceeeeehhhccc-ccceeeccCccccccCchheecCCCC-CCceEecCCeecccHHHHHHHHHHhhc
Confidence 4899999999999999999999999 9999999886 6899999999998 999999999999999999999999994
Q ss_pred -CCCCCCC-CHHHHHHHHHHHHHHHH---------H----------HHHHHHHH-------------hc-----------
Q 042301 81 -QNPLLPR-DPYQRAMARFWAKYSEE---------L----------MAKAFMAL-------------VL----------- 115 (227)
Q Consensus 81 -~~~l~p~-~~~~~a~~~~~~~~~~~---------~----------~~~~~~~~-------------~~----------- 115 (227)
+..|.|. +..+..++.......+. . ..|....+ +.
T Consensus 104 ger~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay 183 (325)
T KOG4420|consen 104 GERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAY 183 (325)
T ss_pred ccccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHH
Confidence 4457773 21122222111111110 0 00000000 00
Q ss_pred ---------------chHHHHHHHHHHHHHHHHHHhhhccc--CCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcc
Q 042301 116 ---------------KGEAKEKNAKEFAEGLEKIEGEFKGK--SGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQV 178 (227)
Q Consensus 116 ---------------~~~~~~~~~~~~~~~l~~le~~L~~~--~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~ 178 (227)
+.....+...++...|+..|..|... ...|+ +|+.+|+||+.+.+.|+++...... ...
T Consensus 184 ~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL--~G~efslADVsLg~~LhRL~~Lg~e--~~y 259 (325)
T KOG4420|consen 184 LAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWL--CGCEFSLADVSLGATLHRLKFLGLE--KKY 259 (325)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceee--ccccchHHHHHHHHHHHHHHHcccH--HHh
Confidence 00122444666777777888888752 35799 9999999999999999998654222 112
Q ss_pred cCCCCCchHHHHHHHhhcchhhhhcCCChHHHHHHHHHH
Q 042301 179 LDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVYFRKV 217 (227)
Q Consensus 179 ~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (227)
+..+..|||..|++++..|++|+++++....+.-+....
T Consensus 260 w~~gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr~~~~~ 298 (325)
T KOG4420|consen 260 WEDGSRPNLESYFERVRRRFSFRKVLGDIFNILRFRLVK 298 (325)
T ss_pred cccCCCccHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHH
Confidence 334789999999999999999999999888776644443
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4e-23 Score=155.91 Aligned_cols=194 Identities=21% Similarity=0.278 Sum_probs=160.7
Q ss_pred CCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcCCCCCCCCCHH
Q 042301 11 WASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLPRDPY 90 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~l~p~~~~ 90 (227)
-.||+||++.+.|.++|+ +|+++.||+..++++|+.+.|.+ ++|+|..|+..++||..|.++|++.++.+++---++.
T Consensus 19 Gdcpf~qr~~m~L~~k~~-~f~vttVd~~~kp~~f~~~sp~~-~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~ 96 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGV-PFKVTTVDLSRKPEWFLDISPGG-KPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPP 96 (221)
T ss_pred CCChhHHHHHHHHHHcCC-CceEEEeecCCCcHHHHhhCCCC-CCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCH
Confidence 369999999999999999 99999999999999999999987 9999999999999999999999999986554222232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcchH-HHHHHHHHHHHHHHHHHhhhcc-cCCccccccCCCcchHHHHHHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-VLKGE-AKEKNAKEFAEGLEKIEGEFKG-KSGLLFAEGESNIGYLELAFGWILYWL 167 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~le~~L~~-~~~~fl~~~G~~~t~aD~~l~~~l~~~ 167 (227)
+.+.+ ...++..+..+ ..+.+ ..+...+.+...|..|+.+|+. ++++|+ .||++|.|||.+.|-|+.+
T Consensus 97 E~asa-------g~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl--~Gd~lt~aDcsLlPKL~~i 167 (221)
T KOG1422|consen 97 ESASA-------GSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFL--DGDKLTLADCSLLPKLHHI 167 (221)
T ss_pred HHHhh-------HHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccc--cCCeeeeehhhhchhHHHH
Confidence 33322 23355555555 34433 4566677889999999999997 669999 9999999999999999999
Q ss_pred HHH-hhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHHHHHHHHHH
Q 042301 168 PVW-EEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVYFRKV 217 (227)
Q Consensus 168 ~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (227)
... ..+.++++ ++..++|.+|+..+-++.+|.++++...++...++..
T Consensus 168 ~va~k~yk~~~I--P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~ 216 (221)
T KOG1422|consen 168 KVAAKHYKNFEI--PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPV 216 (221)
T ss_pred HHHHHHhcCCCC--chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhh
Confidence 764 45567887 5899999999999999999999999988877666543
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.89 E-value=2.7e-22 Score=181.00 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=130.5
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEe-CCeeechhHHHHHHHhhhc
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIH-GEKVVNESLIILEYIDETW 79 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~-~~~~i~eS~~I~~yL~~~~ 79 (227)
|+ ++||+.+.| .+.++.++|++.|+ +|+.+. .+|.| +||+|++ +|..|+||.||++||++.+
T Consensus 1 ~~--~kLy~~~~S-~~~~v~~~L~~lgv-~~e~~~------------~~p~G-kVPvLv~ddG~~L~ES~AIl~YLa~~~ 63 (722)
T PLN02907 1 ME--AKLSFPPDS-PPLAVIAAAKVAGV-PLTIDP------------SLKSG-SAPTLLFSSGEKLTGTNVLLRYIARSA 63 (722)
T ss_pred Ce--EEEEECCCC-ChHHHHHHHHHcCC-CcEEee------------cCCCC-CCcEEEECCCCEEECHHHHHHHHHHhC
Confidence 66 899998877 46689999999999 999865 26788 9999995 7899999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHH
Q 042301 80 EQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELA 159 (227)
Q Consensus 80 ~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~ 159 (227)
++..|+|.++.+++.+++|+.+... +... ..+.+.++.||++|+. ++|| +|+++|+||++
T Consensus 64 p~~~L~p~d~~erAqV~qWL~~~~~-~~~~---------------~~l~~~L~~LE~~L~~--rtYL--vGd~lTLADIa 123 (722)
T PLN02907 64 SLPGFYGQDAFESSQVDEWLDYAPT-FSSG---------------SEFENACEYVDGYLAS--RTFL--VGYSLTIADIA 123 (722)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhh-cccH---------------HHHHHHHHHHHHHhcc--CCee--cCCCCCHHHHH
Confidence 8888999999999999999988754 2110 1456789999999988 8999 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchh
Q 042301 160 FGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPL 199 (227)
Q Consensus 160 l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 199 (227)
+++.+........ .... ...+|+|.+|++++.++|+
T Consensus 124 L~~~L~~~~~~~~--~~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 124 IWSGLAGSGQRWE--SLRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHHHHHhhhhhhh--cccc--cccCHHHHHHHHHHHhCCC
Confidence 9998865411111 1111 2689999999999999999
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.82 E-value=3.5e-20 Score=122.25 Aligned_cols=74 Identities=39% Similarity=0.708 Sum_probs=70.9
Q ss_pred EeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcCCC
Q 042301 7 LLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQN 82 (227)
Q Consensus 7 Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~ 82 (227)
||+++.||||+|+|++|+++|| +|+.+.++.....+++.+.||.+ +||+|++||..|+||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i-~~~~~~v~~~~~~~~~~~~~p~~-~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI-PYELVPVDPEEKRPEFLKLNPKG-KVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE-EEEEEEEBTTSTSHHHHHHSTTS-BSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCC-eEEEeccCcccchhHHHhhcccc-cceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 8999999999999999999999 99999999888889999999998 99999999999999999999999999764
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.80 E-value=3e-19 Score=117.06 Aligned_cols=73 Identities=38% Similarity=0.539 Sum_probs=69.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhc
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETW 79 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 79 (227)
|+||+.+.||+|++++++|+++|+ +|+.+.++..+..+++++.||.| ++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi-~~~~~~v~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGV-SVEIIDVDPDNPPEDLAELNPYG-TVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC-ccEEEEcCCCCCCHHHHhhCCCC-CCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 579999999999999999999999 99999999888889999999998 99999999999999999999999874
No 26
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.80 E-value=2.8e-19 Score=117.11 Aligned_cols=70 Identities=26% Similarity=0.535 Sum_probs=65.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
++||+++.||+|+||+++|.++|+ +|+.+.+++. ++.++|.++||.| +||+|++||.+|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl-~~e~~~v~~~~~~~~~~~~~~inP~g-~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGL-RCEEYDVSLPLSEHNEPWFMRLNPTG-EVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCC-CCEEEEecCCcCccCCHHHHHhCcCC-CCCEEEECCEEEEcHHHHHHHhC
Confidence 479999999999999999999999 9999998874 5678899999998 99999999999999999999985
No 27
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.80 E-value=3.3e-19 Score=120.46 Aligned_cols=70 Identities=26% Similarity=0.339 Sum_probs=66.4
Q ss_pred CCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcCCC
Q 042301 11 WASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQN 82 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~ 82 (227)
..||||+|+|++|+++|| +|+.+.+++.+++++|+++||.| +||+|+++|..|+||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi-~ye~~~vd~~~~p~~~~~~nP~g-~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV-VFNVTTVDMKRKPEDLKDLAPGT-QPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCC-ceEEEEeCCCCCCHHHHHhCCCC-CCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 579999999999999999 99999999999999999999998 99999999999999999999999998654
No 28
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.79 E-value=4.6e-19 Score=116.58 Aligned_cols=73 Identities=64% Similarity=1.054 Sum_probs=68.4
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCC-CCccceEEeCCeeechhHHHHHHHhhhc
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPV-YKKVPVFIHGEKVVNESLIILEYIDETW 79 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~-~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 79 (227)
|+||+++.||+|++++++|+++|+ +|+.+.++...+.++|.+.||. | ++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl-~~~~~~~~~~~~~~~~~~~~p~~~-~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGV-PYEYVEEDLGNKSELLLASNPVHK-KIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCC-CCEEEEeCcccCCHHHHHhCCCCC-CCCEEEECCEEeehHHHHHHHHHhhC
Confidence 579999999999999999999999 9999999888888999999995 7 99999999999999999999999864
No 29
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.77 E-value=1e-18 Score=115.73 Aligned_cols=74 Identities=24% Similarity=0.263 Sum_probs=66.1
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCC-CChhhhhhCCCCCccceEEe--CCeeechhHHHHHHHhhhc
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN-KSPRLLELNPVYKKVPVFIH--GEKVVNESLIILEYIDETW 79 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~-~~~~~~~~np~~~~vP~L~~--~~~~i~eS~~I~~yL~~~~ 79 (227)
+++||+++.||+|++|+++|.++|| +|+.+.++... ..+++++.||.| +||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi-~y~~~~v~~~~~~~~~~~~~~p~~-~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELEL-DVILYPCPKGSPKRDKFLEKGGKV-QVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCC-cEEEEECCCChHHHHHHHHhCCCC-cccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 3789999999999999999999999 99999886543 467899999998 9999997 4689999999999999874
No 30
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.77 E-value=2e-18 Score=112.59 Aligned_cols=69 Identities=32% Similarity=0.536 Sum_probs=64.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeC-CeeechhHHHHHHH
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHG-EKVVNESLIILEYI 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~-~~~i~eS~~I~~yL 75 (227)
++||+++.||+|+|++++|+++|+ +|+.+.++..+..++|.+.||.| +||+|+++ |..|+||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl-~~e~~~v~~~~~~~~~~~~np~~-~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGI-TVELREVELKNKPAEMLAASPKG-TVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCC-CcEEEEeCCCCCCHHHHHHCCCC-CCCEEEECCCcEEecHHHHHHhh
Confidence 479999999999999999999999 99999999887788999999998 99999985 89999999999996
No 31
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.76 E-value=2.3e-18 Score=113.17 Aligned_cols=71 Identities=28% Similarity=0.391 Sum_probs=65.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
++||+++.||+|++++++|+++|+ +|+.+.+++. +..++|.+.||.| ++|+|+++|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi-~~e~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGL-ELNLKEVNLMKGEHLKPEFLKLNPQH-TVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCC-CCEEEEecCccCCcCCHHHHhhCcCC-CCCEEEECCEEEEcHHHHHHHHhC
Confidence 579999999999999999999999 9999998864 3568999999998 999999999999999999999974
No 32
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.76 E-value=5.1e-18 Score=112.11 Aligned_cols=72 Identities=38% Similarity=0.541 Sum_probs=66.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDET 78 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 78 (227)
++||+++.||+|++++++|+++|+ +|+.+.++.. +.+++|.+.||.| ++|+|+++|..|+||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i-~~~~~~~~~~~~~~~~~~~~~~~P~~-~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV-DYELVPVDLTKGEHKSPEHLARNPFG-QIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC-CcEEEEeCccccccCCHHHHhhCCCC-CCCEEEECCEEEEcHHHHHHHHhhC
Confidence 789999999999999999999999 9999988865 4568899999998 9999999999999999999999863
No 33
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=129.50 Aligned_cols=182 Identities=13% Similarity=0.245 Sum_probs=127.8
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh------
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE------ 77 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~------ 77 (227)
+++||.+-.||||.+||.+|.+.|| +|+++.|++...++ .+.+.. +|||+|+..|..+.||.+|+.-|+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgi-sY~VVEVnpV~r~e--Ik~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~ 165 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGI-SYAVVEVNPVLRQE--IKWSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKR 165 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCC-ceEEEEecchhhhh--cccccc-ccccEEEeccceechhHHHHHHHHHHhccCC
Confidence 5899999999999999999999999 99999999753222 133444 4999999877779999999887743
Q ss_pred --------hcCCCCCCC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH-hcc---------
Q 042301 78 --------TWEQNPLLP-----------------------RDPYQRAMARFWAKYSEELMAKAFMAL-VLK--------- 116 (227)
Q Consensus 78 --------~~~~~~l~p-----------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~--------- 116 (227)
.||..+.+. .+-..+..-+.|-.|+++.+...+..- ++.
T Consensus 166 q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFe 245 (370)
T KOG3029|consen 166 QDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFE 245 (370)
T ss_pred CCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHH
Confidence 233111100 011223345678888887765544432 000
Q ss_pred -----h--------------------------------HHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHH
Q 042301 117 -----G--------------------------------EAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELA 159 (227)
Q Consensus 117 -----~--------------------------------~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~ 159 (227)
+ -...+..+.+...++.+-..|+.+ ++|+ +|++|++||++
T Consensus 246 wf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgkn-r~fl--GG~kPnLaDLs 322 (370)
T KOG3029|consen 246 WFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKN-RPFL--GGKKPNLADLS 322 (370)
T ss_pred HHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCC-CCcc--CCCCCchhhhh
Confidence 0 011335677888888888889743 8999 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcc
Q 042301 160 FGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNH 197 (227)
Q Consensus 160 l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 197 (227)
+|++|..+.....+ .++ -...++.+|+-+|++.
T Consensus 323 vfGvl~sm~gc~af--kd~---~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 323 VFGVLRSMEGCQAF--KDC---LQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhhhhhHhhhhhHH--HHH---HhcchHHHHHHHHHHH
Confidence 99999988554333 233 3467899999999874
No 34
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.75 E-value=3e-18 Score=112.34 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=66.4
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
++||+++.|++++++|++|.++|+ +|+.+.++..+..+++.+.||.| ++|+|+++|..|+||.+|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i-~~e~~~v~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGI-SWEEERVTYEEWQESLKPKMLFG-QLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCC-CCEEEEecHHHhhhhhhccCCCC-CCCEEEECCEEEEcHHHHHHHHhc
Confidence 789999999999999999999999 99999998765667899999998 999999999999999999999986
No 35
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.75 E-value=8.1e-18 Score=111.17 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=66.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCC---CChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhc
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN---KSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETW 79 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~---~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 79 (227)
++||+++.|+++++++++|+++|+ +|+.+.++..+ ..+++.+.||.| ++|+|+++|.+|+||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~-~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKI-PFEECPIDLRKGEQLTPEFKKINPFG-KVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCC-CcEEEEecCCCCCcCCHHHHHhCcCC-CCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 479999999999999999999999 99999988653 457899999998 99999999999999999999999864
No 36
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.74 E-value=8.6e-18 Score=114.44 Aligned_cols=72 Identities=36% Similarity=0.492 Sum_probs=67.3
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeC-CeeechhHHHHHHHh
Q 042301 3 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHG-EKVVNESLIILEYID 76 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~-~~~i~eS~~I~~yL~ 76 (227)
++++||+++.||+|++++++|+++|+ +|+.+.++..+..+++.+.||.+ ++|+|+++ |..|+||.+|++||+
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl-~~~~~~v~~~~~~~~~~~~np~~-~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNI-PHEVININLKDKPDWFLEKNPQG-KVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCC-CCeEEEeCCCCCcHHHHhhCCCC-CcCEEEECCCCEEECHHHHHHhhC
Confidence 57999999999999999999999999 99999998877777899999998 99999986 899999999999985
No 37
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.74 E-value=9.7e-18 Score=112.17 Aligned_cols=74 Identities=32% Similarity=0.509 Sum_probs=67.4
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeC---CeeechhHHHHHHHhh
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHG---EKVVNESLIILEYIDE 77 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~---~~~i~eS~~I~~yL~~ 77 (227)
+++||+++. |+|++++++|+++|| +|+.+.+++. +.+++|.+.||.+ +||+|+++ |..|+||.+|++||++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl-~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~g~~l~eS~aI~~yL~~ 77 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGL-PYEIHPVDISKGEQKKPEFLKINPNG-RIPAIVDHNGTPLTVFESGAILLYLAE 77 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCC-CcEEEEecCcCCcccCHHHHHhCcCC-CCCEEEeCCCCceEEEcHHHHHHHHHH
Confidence 378999985 999999999999999 9999998864 5678999999998 99999987 7899999999999999
Q ss_pred hcC
Q 042301 78 TWE 80 (227)
Q Consensus 78 ~~~ 80 (227)
+++
T Consensus 78 ~~~ 80 (81)
T cd03048 78 KYD 80 (81)
T ss_pred HhC
Confidence 875
No 38
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.73 E-value=1.1e-17 Score=110.23 Aligned_cols=70 Identities=29% Similarity=0.369 Sum_probs=65.5
Q ss_pred EEeccCCChHHHHHHHHHHHcCCCCceeEecCCC--CCChhhhhhCCCCCccceEEe-CCeeechhHHHHHHHhh
Q 042301 6 TLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF--NKSPRLLELNPVYKKVPVFIH-GEKVVNESLIILEYIDE 77 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~--~~~~~~~~~np~~~~vP~L~~-~~~~i~eS~~I~~yL~~ 77 (227)
+||+++.||++++++++|+++|+ +|+.+.+++. +.+++|.++||.| ++|+|++ +|.+|+||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi-~~~~~~v~~~~~~~~~~~~~~nP~~-~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGL-DVEIVDFQPGKENKTPEFLKKFPLG-KVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCC-ceEEEecccccccCCHHHHHhCCCC-CCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999 9999999875 5788999999998 9999997 58899999999999986
No 39
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.73 E-value=1.8e-16 Score=114.71 Aligned_cols=123 Identities=36% Similarity=0.731 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHH
Q 042301 90 YQRAMARFWAKYSEELMAKAFMALV-LKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLP 168 (227)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~ 168 (227)
.+|+.+++|+.+.++.+.+.+...+ ..++..+.....+.+.++.||+.|++ ++|+ +|+++|+|||++++.+.++.
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~G~~~t~ADi~l~~~~~~~~ 77 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGG--KPFF--GGDTIGYVDIALGSFLGWFR 77 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcC--CCCC--CCCCcchHHHHHHHHHHHHH
Confidence 4789999999999988888876663 33455667788999999999999987 8999 99999999999999998875
Q ss_pred HHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHHHHHHHHH
Q 042301 169 VWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVYFRK 216 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (227)
......+.+.++...+|++.+|++++.++|++++++...+...+++++
T Consensus 78 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 78 AYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 443333433212367999999999999999999999998887777664
No 40
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.73 E-value=1.6e-17 Score=108.74 Aligned_cols=70 Identities=37% Similarity=0.626 Sum_probs=64.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
++||+++.||+|++++++|.++|+ +|+.+.+++. +..++|.+.||.| ++|+|+++|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGI-PYEWVEVDILKGETRTPEFLALNPNG-EVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCC-CcEEEEecCCCcccCCHHHHHhCCCC-CCCEEEECCEEEEcHHHHHHHhC
Confidence 579999999999999999999999 9999998864 4678899999998 99999999999999999999984
No 41
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.73 E-value=1.8e-17 Score=108.69 Aligned_cols=70 Identities=34% Similarity=0.451 Sum_probs=64.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
++||+++.||++++++++|+++|+ +|+.+.++.. +..++|.++||.| ++|+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l-~~~~~~~~~~~~~~~~~~~~~~nP~~-~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGL-PYERIDAGGQFGGLDTPEFLAMNPNG-RVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCC-CCEEEEeccccccccCHHHHhhCCCC-CCCEEEECCEEEECHHHHHHHhC
Confidence 479999999999999999999999 9999988753 3568899999998 99999999999999999999984
No 42
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.72 E-value=1.7e-17 Score=108.69 Aligned_cols=70 Identities=31% Similarity=0.497 Sum_probs=65.3
Q ss_pred eEEeccCCChHHHHHHHHHHH--cCCCCceeEecCCCCCChhhhhhCCCCCccceEEe-CCeeechhHHHHHHHh
Q 042301 5 VTLLGFWASPFVFRVKVALQQ--KGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIH-GEKVVNESLIILEYID 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~--~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~-~~~~i~eS~~I~~yL~ 76 (227)
++||+++.||+|+++|++|++ +|+ +|+.+.++...+.+++++.||.+ ++|+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLG-KIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCC-CCCEEEECCCCEEECHHHHHhhhC
Confidence 579999999999999999999 899 99999998877789999999998 9999985 7899999999999985
No 43
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.72 E-value=1.1e-17 Score=109.33 Aligned_cols=71 Identities=23% Similarity=0.226 Sum_probs=64.0
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCC-CChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN-KSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~-~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
++||+++.|++|++||++|+++|+ +|+.+.++... ..+++.+.||.+ ++|+|+++|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi-~~e~~~~~~~~~~~~~~~~~~p~~-~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGV-EYEDVRITYEEWPELDLKPTLPFG-QLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCC-CcEEEEeCHHHhhhhhhccCCcCC-CCCEEEECCEEEEecHHHHHHhhC
Confidence 579999999999999999999999 99999988753 334588999998 999999999999999999999974
No 44
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.72 E-value=2.4e-16 Score=123.38 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=133.6
Q ss_pred eEEeccC-------CChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 5 VTLLGFW-------ASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
+-||.++ .||||++|...|+..+| |||.+...+. ..++.| ++|.++-||..|.||..|..+|.+
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~I-pYE~~~~~~~-------~rSr~G-~lPFIELNGe~iaDS~~I~~~L~~ 116 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDI-PYEIVDCSLK-------RRSRNG-TLPFIELNGEHIADSDLIEDRLRK 116 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCC-Cceeccccce-------eeccCC-CcceEEeCCeeccccHHHHHHHHH
Confidence 4566654 69999999999999999 9999876642 346667 999999999999999999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-------------h------------------H-------
Q 042301 78 TWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMAL-VLK-------------G------------------E------- 118 (227)
Q Consensus 78 ~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~-------------~------------------~------- 118 (227)
.+.-+..+ ++.++|+.+.+...+++++......+ ..+ . .
T Consensus 117 hf~~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g 194 (281)
T KOG4244|consen 117 HFKIPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTG 194 (281)
T ss_pred HcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 98633323 46688888888888887776655543 000 0 0
Q ss_pred -----HHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHh-hhcCCcccCCCCCchHHHHHH
Q 042301 119 -----AKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWE-EAGSFQVLDPQKFPVITEWST 192 (227)
Q Consensus 119 -----~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~w~~ 192 (227)
..++...-+.+.|+.++..|++ ++|| .|+++|-+|+.+|+.|..+.. + ..--.+++ .+++|||.+|++
T Consensus 195 ~IG~f~~~Ei~ell~rDlr~i~~~Lg~--Kkfl--fGdkit~~DatvFgqLa~v~Y-P~~~~i~d~l-e~d~p~l~eYce 268 (281)
T KOG4244|consen 195 AIGDFESAEIDELLHRDLRAISDYLGD--KKFL--FGDKITPADATVFGQLAQVYY-PFRSHISDLL-EGDFPNLLEYCE 268 (281)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhCC--Cccc--cCCCCCcceeeehhhhhheec-cCCCcHHHHH-hhhchHHHHHHH
Confidence 0133455568889999999999 9999 999999999999999987743 1 00012233 488999999999
Q ss_pred Hhhc
Q 042301 193 KFVN 196 (227)
Q Consensus 193 ~~~~ 196 (227)
|+++
T Consensus 269 RIr~ 272 (281)
T KOG4244|consen 269 RIRK 272 (281)
T ss_pred HHHH
Confidence 9986
No 45
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.71 E-value=3.4e-17 Score=106.72 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=61.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeC-CeeechhHHHHHHHhh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHG-EKVVNESLIILEYIDE 77 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~-~~~i~eS~~I~~yL~~ 77 (227)
|+||+++.||+|+|+|++|+++|+ +|+.+.++... .....+.||.+ ++|+|+++ |..+.||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl-~~~~~~~~~~~-~~~~~~~~~~~-~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNI-PVEQIILQNDD-EATPIRMIGAK-QVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCC-CeEEEECCCCc-hHHHHHhcCCC-ccCEEEeCCCeEeehHHHHHHHHhC
Confidence 569999999999999999999999 99999887543 23456789988 99999985 8999999999999974
No 46
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.71 E-value=4.1e-17 Score=106.80 Aligned_cols=70 Identities=37% Similarity=0.683 Sum_probs=65.0
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
|+||+++.|+++++++++|+++|| +|+.+.+++. +..+++.+.||.+ ++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi-~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGL-DYEYVPVNLLKGEQLSPAYRALNPQG-LVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCC-CCeEEEecCccCCcCChHHHHhCCCC-CCCEEEECCEEEEcHHHHHHHhC
Confidence 579999999999999999999999 9999998874 4678899999998 99999999999999999999985
No 47
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.71 E-value=4.9e-17 Score=107.30 Aligned_cols=73 Identities=33% Similarity=0.524 Sum_probs=66.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWE 80 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~ 80 (227)
++||+++. +++++++++|+++|+ +|+.+.++.. ++.++|.+.||.+ ++|+|+++|..|+||.+|++||++.++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i-~~~~~~~~~~~~~~~~~~~~~~~p~~-~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGL-PYELVLYDRGPGEQAPPEYLAINPLG-KVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCC-CcEEEEeCCCCCccCCHHHHhcCCCC-CCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47998886 589999999999999 9999998864 5678999999998 999999999999999999999999864
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.71 E-value=5.3e-17 Score=107.52 Aligned_cols=73 Identities=25% Similarity=0.411 Sum_probs=65.5
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEeC-CeeechhHHHHHHHhhhcC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIHG-EKVVNESLIILEYIDETWE 80 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~~-~~~i~eS~~I~~yL~~~~~ 80 (227)
++||+++.| ++++|+++|.++|| +|+.+.++.. +..++|+++||.+ ++|+|+++ |..++||.+|++||++.||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i-~~~~~~~~~~~~~~~~~~~~~~np~~-~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGL-PFELVRVDLRTKTQKGADYLAINPKG-QVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCC-CceEEEEecccCccCCHhHHHhCCCC-CCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 579999866 68999999999999 9999988875 3578999999998 99999986 8999999999999999875
No 49
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.71 E-value=4.1e-17 Score=106.99 Aligned_cols=70 Identities=31% Similarity=0.500 Sum_probs=63.7
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCCCCccceEEe-CCeeechhHHHHHHHh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPVYKKVPVFIH-GEKVVNESLIILEYID 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~~~~vP~L~~-~~~~i~eS~~I~~yL~ 76 (227)
++||+++.||+|++++++|.++|+ +|+.+.++.. ...+++.+.||.+ ++|+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l-~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGI-DVPLVTVDLAAGEQRSPEFLAKNPAG-TVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCC-CceEEEeecccCccCCHHHHhhCCCC-CCCEEEeCCCCEEecHHHHHHHhC
Confidence 579999999999999999999999 9999988864 3567899999998 9999995 7789999999999985
No 50
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.68 E-value=2.2e-16 Score=104.04 Aligned_cols=68 Identities=25% Similarity=0.421 Sum_probs=61.3
Q ss_pred ceEEeccC-------CChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 4 EVTLLGFW-------ASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 4 ~~~Ly~~~-------~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
+++||+++ .||+|++|+++|+++|+ +|+.+.++.. +.||.| ++|+|+++|.+|.||.+|++||+
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi-~~~~~~~~~~-------~~~p~g-~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGI-PYENKFGGLA-------KRSPKG-KLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCC-CcEEeecCcc-------cCCCCC-CCCEEEECCEEEcCHHHHHHHHH
Confidence 36899988 68999999999999999 9999887642 589998 99999999999999999999999
Q ss_pred hhcC
Q 042301 77 ETWE 80 (227)
Q Consensus 77 ~~~~ 80 (227)
++|+
T Consensus 72 ~~~~ 75 (75)
T cd03080 72 EKYG 75 (75)
T ss_pred HHcC
Confidence 9863
No 51
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.68 E-value=1.6e-16 Score=103.22 Aligned_cols=65 Identities=48% Similarity=0.770 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHHcCCCCceeEecCC----CCCChhhhhhCCCCCccceEEe-CCeeechhHHHHHHHhhh
Q 042301 12 ASPFVFRVKVALQQKGVVDYEYIEEDI----FNKSPRLLELNPVYKKVPVFIH-GEKVVNESLIILEYIDET 78 (227)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~y~~~~v~~----~~~~~~~~~~np~~~~vP~L~~-~~~~i~eS~~I~~yL~~~ 78 (227)
+|||++|++++|+++|+ +|+...+.. ...+++|.++||.| +||+|++ +|.++.||.+|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl-~~~~~~v~~~~~~~~~~~~~~~~~p~~-~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGL-PYEIKVVPLIPKGEQKPPEFLALNPRG-KVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTG-TCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCC-CCEEEEEeeecCccccChhhhccCcCe-EEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999 999988743 34668999999998 9999997 789999999999999873
No 52
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.68 E-value=1.7e-16 Score=104.75 Aligned_cols=69 Identities=38% Similarity=0.550 Sum_probs=58.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC---CCChhhhhhCCC-CCccceEEeC-CeeechhHHHHHHHhh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF---NKSPRLLELNPV-YKKVPVFIHG-EKVVNESLIILEYIDE 77 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~---~~~~~~~~~np~-~~~vP~L~~~-~~~i~eS~~I~~yL~~ 77 (227)
++||+. .+++.++|++|+++|+ +|+.+.+++. +++++|.+.||. | ++|+|+++ |.+|+||.||++||++
T Consensus 3 l~l~~~--~~~~~~~r~~l~~~gv-~~e~~~v~~~~~~~~~~e~~~~~p~~g-~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNG--RGRSERIRLLLAEKGV-EYEDVRVDFEKGEHKSPEFLAINPMFG-KVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESS--STTTHHHHHHHHHTT---EEEEEEETTTTGGGSHHHHHHTTTSS-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEECC--CCchHHHHHHHHHhcc-cCceEEEecccccccchhhhhcccccc-eeeEEEECCCCEEEcHHHHHHHhCC
Confidence 455554 4599999999999999 9999999874 345999999999 8 99999998 9999999999999985
No 53
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.68 E-value=1.5e-16 Score=105.25 Aligned_cols=72 Identities=21% Similarity=0.415 Sum_probs=62.5
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeC----CeeechhHHHHHHHhhhc
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHG----EKVVNESLIILEYIDETW 79 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~----~~~i~eS~~I~~yL~~~~ 79 (227)
+++||+++.||+|++++++|.++|| +|+.+.+++... .+ ...||.+ +||+|+++ |.+|+||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi-~y~~~~~~~~~~-~~-~~~~~~~-~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGI-PYEVVEVNPVSR-KE-IKWSSYK-KVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC-ceEEEECCchhH-HH-HHHhCCC-ccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 4799999999999999999999999 999998876432 23 3679998 99999965 789999999999999864
No 54
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.67 E-value=3.1e-16 Score=104.31 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=62.7
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhC-----CCCCccceEEeCCeeechhHHHHHHHhhh
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELN-----PVYKKVPVFIHGEKVVNESLIILEYIDET 78 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~n-----p~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 78 (227)
+++||+++.|+.+++++++|+++|+ +|+.+.++.. +++.+.+ |.| +||+|++||.+|+||.||++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi-~~e~~~v~~~---~~~~~~~~~~~~~~g-~vP~L~~~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGV-EFEEKFIESA---EDLEKLKKDGSLMFQ-QVPMVEIDGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCC-CcEEEEeccH---HHHHhhccccCCCCC-CCCEEEECCEEEeeHHHHHHHHHHH
Confidence 3689999999999999999999999 9999988752 4444444 578 9999999999999999999999998
Q ss_pred cC
Q 042301 79 WE 80 (227)
Q Consensus 79 ~~ 80 (227)
++
T Consensus 76 ~~ 77 (79)
T cd03077 76 YN 77 (79)
T ss_pred cC
Confidence 75
No 55
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.67 E-value=2.4e-16 Score=105.59 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=62.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCC----CChhhhhh-----CCCCCccceEEeCCeeechhHHHHHHH
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN----KSPRLLEL-----NPVYKKVPVFIHGEKVVNESLIILEYI 75 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~----~~~~~~~~-----np~~~~vP~L~~~~~~i~eS~~I~~yL 75 (227)
++||++..++.|++++++|+++|| +|+.+.+++.. ..+++... +|.| +||+|++||.+|+||.||++||
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi-~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g-~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGE-KYEEKRYELGDAPDYDRSQWLNEKFKLGLDFP-NLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCC-CcEEEEeccCCccccchHhhhccchhcCCcCC-CCCEEEECCEEEeehHHHHHHH
Confidence 479999999999999999999999 99999998753 12455432 2998 9999999999999999999999
Q ss_pred hhhc
Q 042301 76 DETW 79 (227)
Q Consensus 76 ~~~~ 79 (227)
++++
T Consensus 79 a~~~ 82 (82)
T cd03075 79 ARKH 82 (82)
T ss_pred hhcC
Confidence 9864
No 56
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.66 E-value=1.9e-15 Score=109.24 Aligned_cols=122 Identities=15% Similarity=0.295 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMALVLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVW 170 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~ 170 (227)
+||+.+.|+..++. +...+...+..++..++..+.+.+.|+.+|+.|++++++|+ +|+++|+||+++++++.++...
T Consensus 2 ~ra~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl--~G~~~t~aDi~~~~~~~~~~~~ 78 (124)
T cd03184 2 EKAQQKLLLERFSK-VVSAFYKLLGAPSDREEKKAELRSALENLEEELTKRGTPFF--GGDSPGMVDYMIWPWFERLEAL 78 (124)
T ss_pred hHHHHHHHHHHHhh-hhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCc--CCCCccHHHHHhhHHHHHHHHH
Confidence 58999999999975 65655555333666778899999999999999986447999 9999999999999999877543
Q ss_pred hhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHHHHHHHHH
Q 042301 171 EEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVYFRK 216 (227)
Q Consensus 171 ~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (227)
....+... ....+|+|++|+++|.++|+++.++.+.+...++++.
T Consensus 79 ~~~~~~~~-~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 79 KLLLGYEF-PLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred HhhccccC-CcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 32211111 1378999999999999999999999999999998874
No 57
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.65 E-value=2.5e-15 Score=111.20 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHH
Q 042301 90 YQRAMARFWAKYSEELMAKAFMAL-V-LKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWL 167 (227)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~ 167 (227)
..|+.+++|+++..+.+.+.+... . ..++..+.....+.+.|+.||+.|++ ++|+ +|+++|+|||++++.+.++
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~--~~yl--~Gd~~TlADi~l~~~l~~~ 78 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSD--RRYL--LGDRLTEADIRLFTTLIRF 78 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHcc--CCee--eCCCccHHHHHHHHHHHHH
Confidence 358889999999999888877666 2 34566778889999999999999987 8999 9999999999999998766
Q ss_pred HHHh-hhc--CCcccCCCCCchHHHHHHHhhcchhhhhcCCChHHHHHHHHHHHH
Q 042301 168 PVWE-EAG--SFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVYFRKVSE 219 (227)
Q Consensus 168 ~~~~-~~~--~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (227)
.... ... +... ..++|+|.+|+++|.++|++++++.......+|++++++
T Consensus 79 ~~~~~~~~~~~~~~--~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 79 DAVYVQHFKCNLKR--IRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred HHHhhhhcccccch--hhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 3211 111 1122 257999999999999999999999987878888888764
No 58
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.63 E-value=9e-16 Score=103.31 Aligned_cols=67 Identities=30% Similarity=0.583 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHcCCCCceeEecCCCCC---ChhhhhhCCCCCccceEEeC-CeeechhHHHHHHHhhhcC
Q 042301 11 WASPFVFRVKVALQQKGVVDYEYIEEDIFNK---SPRLLELNPVYKKVPVFIHG-EKVVNESLIILEYIDETWE 80 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~---~~~~~~~np~~~~vP~L~~~-~~~i~eS~~I~~yL~~~~~ 80 (227)
++||+|++++++|.++|| +|+.+.+++... .+++ +.||.+ ++|+|+++ |..|+||.+|++||++++|
T Consensus 14 ~~Sp~~~kv~~~L~~~~i-~~~~~~~~~~~~~~~~~~~-~~~p~~-~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGL-EYKTVPVEFPDIPPILGEL-TSGGFY-TVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCC-CCeEEEecCCCcccccccc-cCCCCc-eeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 689999999999999999 999998886532 2334 789998 99999998 8999999999999999874
No 59
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.9e-14 Score=106.19 Aligned_cols=179 Identities=16% Similarity=0.161 Sum_probs=124.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEE-eCCeeechhHHHHHHHhhhcCCCC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI-HGEKVVNESLIILEYIDETWEQNP 83 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~-~~~~~i~eS~~I~~yL~~~~~~~~ 83 (227)
|+||-+.-||||-|+|+++..+|| |++.+....++...--+-+.. ++||+|+ ++|..+.||..|+.|+++..+.+-
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~ni-pve~~vL~nDDe~Tp~rmiG~--KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~ 77 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNI-PVELHVLLNDDEETPIRMIGQ--KQVPILQKEDGRAMPESLDIVHYVDELDGKPL 77 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCC-ChhhheeccCcccChhhhhcc--cccceEEccccccchhhhHHHHHHHHhcCchh
Confidence 569999999999999999999999 999887655432222222333 4899999 588999999999999999986543
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH----hcchH---------------------HHHHHHHHHHHHHHHHHhh
Q 042301 84 LLP-RDPYQRAMARFWAKYSEELMAKAFMAL----VLKGE---------------------AKEKNAKEFAEGLEKIEGE 137 (227)
Q Consensus 84 l~p-~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~---------------------~~~~~~~~~~~~l~~le~~ 137 (227)
+-+ ..++-.+..+....+.+.-+.+.+... +..++ .......++...|+.++..
T Consensus 78 lt~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~L 157 (215)
T COG2999 78 LTGKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDKL 157 (215)
T ss_pred hccCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 333 244445555555555555455555544 22211 1245577888899999998
Q ss_pred hcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchh
Q 042301 138 FKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPL 199 (227)
Q Consensus 138 L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 199 (227)
+... . - .....++-|+.+|+.|+.+ .-..+.++ -.++..|..+|.+..-
T Consensus 158 i~~~--s-~--~n~~l~~ddi~vFplLRnl---t~v~gi~w-----ps~v~dy~~~msektq 206 (215)
T COG2999 158 IVGP--S-A--VNGELSEDDILVFPLLRNL---TLVAGIQW-----PSRVADYRDNMSEKTQ 206 (215)
T ss_pred hcCc--c-h--hccccchhhhhhhHHhccc---eecccCCC-----cHHHHHHHHHHHHhhC
Confidence 8863 3 2 3345999999999999887 33334443 3479999999987543
No 60
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.62 E-value=1.2e-14 Score=102.23 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHH
Q 042301 89 PYQRAMARFWAKYSEELMAKAFMALV-LKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWL 167 (227)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~ 167 (227)
+.+|++++.|+.++++.+.+.+.... ..++..+...+.+.+.|..+|+.|++ ++|+ +|+++|+|||++++.+.++
T Consensus 1 p~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~G~~~t~aDi~~~~~~~~~ 76 (107)
T cd03186 1 PVARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAH--KPYF--MSEEFSLVDCALAPLLWRL 76 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcC--CCcc--cCCCCcHHHHHHHHHHHHH
Confidence 35799999999999998888876663 33556677888999999999999997 8999 9999999999999998655
Q ss_pred HHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhc
Q 042301 168 PVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKEN 203 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~ 203 (227)
. ..+.++. ..+|++++|++++.+||+++.+
T Consensus 77 ~----~~~~~~~--~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 77 P----ALGIELP--KQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred H----HcCCCCc--ccchHHHHHHHHHHCCHHHHHh
Confidence 2 2354442 5799999999999999999875
No 61
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.62 E-value=2.1e-15 Score=98.78 Aligned_cols=67 Identities=33% Similarity=0.485 Sum_probs=60.8
Q ss_pred eccCCChHHHHHHHHHHHcCCCCceeEecCCCC--CChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 8 LGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN--KSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 8 y~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~--~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
-+...||++++++++|+++|+ +|+.+.++... ..++|.+.||.| ++|+|+++|.+|+||.+|++||+
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl-~~e~~~v~~~~~~~~~~~~~~nP~g-~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGI-PFEEILVPLYTPDTRARILEFSPTG-KVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCC-CCEEEEeCCCCccccHHHHhhCCCC-cCCEEEECCEEEEcHHHHHHHhC
Confidence 356789999999999999999 99999888753 468899999998 99999999999999999999984
No 62
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.61 E-value=9.2e-15 Score=104.27 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-h---cchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHH
Q 042301 87 RDPYQRAMARFWAKYSEELMAKAFMAL-V---LKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGW 162 (227)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~ 162 (227)
.++..++.+++|..+.+..+.+.+... + ...+..+.....+.+.++.+|+.|++ ++|+ +|+++|+|||++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~--~~yl--~Gd~~tlADi~l~~ 77 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQ--HSYL--LGDKPSLADWAIFP 77 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHcc--CCcc--CCCCccHHHHHHHH
Confidence 368899999999999999999888776 1 12235677789999999999999998 8999 99999999999999
Q ss_pred HHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhc
Q 042301 163 ILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKEN 203 (227)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~ 203 (227)
.+.++... .....+ ..++|+|.+|++++.++|+++++
T Consensus 78 ~l~~~~~~-~~~~~~---~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 78 FVRQFAHV-DPKWFD---QSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHHHHh-hhcccC---cccCHHHHHHHHHHHcChHHHhh
Confidence 88766322 111222 27899999999999999999975
No 63
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.59 E-value=6.3e-15 Score=94.91 Aligned_cols=70 Identities=43% Similarity=0.651 Sum_probs=63.1
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCCh-hhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSP-RLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~-~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
++||+++.||+|++++++|+++|| +|+.+.++...... ++.+.+|.+ ++|+|+++|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~-~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGL-PYELVPVDLGEGEQEEFLALNPLG-KVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCC-CcEEEEeCCCCCCCHHHHhcCCCC-CCCEEEECCEEEEcHHHHHHHhC
Confidence 479999999999999999999999 99999988764333 488899998 99999999999999999999985
No 64
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.57 E-value=3.8e-14 Score=101.86 Aligned_cols=116 Identities=16% Similarity=0.299 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhhhcc-cCCccccccCCCcchHHHHHHHHHH
Q 042301 88 DPYQRAMARFWAKYSEELMAKAFMAL-VLKGEAKEKNAKEFAEGLEKIEGEFKG-KSGLLFAEGESNIGYLELAFGWILY 165 (227)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~fl~~~G~~~t~aD~~l~~~l~ 165 (227)
|+.+|+.+++++.+... +...+... +.+. ..+++.+.++.||+.|++ ++++|+ +| ++|+|||++++++.
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~l~~Le~~L~~~~~~~fl--~G-~~tlADi~l~~~~~ 71 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIKGD-----PSAEAAAALDYIENALSKFDDGPFF--LG-QFSLVDIAYVPFIE 71 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-----chHHHHHHHHHHHHHHHhcCCCCCc--CC-CccHHHHHHHHHHH
Confidence 46789999999988333 43332222 2221 123456778888888863 237899 99 99999999999998
Q ss_pred HHHHH-hhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHHHHHHH
Q 042301 166 WLPVW-EEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVYF 214 (227)
Q Consensus 166 ~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~ 214 (227)
++... ....+.++ ..++|+|.+|+++|.++|+++++.++.+++.+++
T Consensus 72 ~~~~~~~~~~~~~~--~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 72 RFQIFLSELFNYDI--TEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHHHhcCccc--cccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 76432 23345555 2689999999999999999999999988887765
No 65
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.56 E-value=3.3e-14 Score=100.86 Aligned_cols=103 Identities=18% Similarity=0.346 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hc----c-----hHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-VL----K-----GEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAF 160 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-~~----~-----~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l 160 (227)
+|+.+++|+.+..+.+.+.+... .. . +...+.....+.+.++.+|+.|++ ++|+ +|+++|+|||++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l--~G~~~t~aDi~~ 77 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAG--GPYL--LGDRFSVADAYL 77 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCee--eCCCcchHHHHH
Confidence 58999999999998888877655 11 1 223456678899999999999987 8999 999999999999
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcC
Q 042301 161 GWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENL 204 (227)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
++.+.++.. .+.+. .++|++.+|++++.++|++++++
T Consensus 78 ~~~~~~~~~----~~~~~---~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 78 FVVLRWAPG----VGLDL---SDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHHHhh----cCCCh---hhChHHHHHHHHHHhCHHhHhhC
Confidence 999987632 23333 57999999999999999999863
No 66
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.56 E-value=1.5e-14 Score=94.36 Aligned_cols=65 Identities=23% Similarity=0.341 Sum_probs=58.0
Q ss_pred eEEeccC-------CChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 5 VTLLGFW-------ASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
++||.++ .||+|++++++|+++|| +|+.+.++... .||.| ++|+|+++|..+.||.+|++||++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i-~~~~~~~~~~~-------~~p~g-~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGI-PYEVVFSSNPW-------RSPTG-KLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCC-ceEEEecCCcc-------cCCCc-ccCEEEECCEEEcCHHHHHHHHhh
Confidence 3577776 89999999999999999 99999987532 78988 999999999999999999999987
Q ss_pred h
Q 042301 78 T 78 (227)
Q Consensus 78 ~ 78 (227)
+
T Consensus 72 ~ 72 (72)
T cd03054 72 K 72 (72)
T ss_pred C
Confidence 4
No 67
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.56 E-value=1.2e-13 Score=100.30 Aligned_cols=108 Identities=12% Similarity=0.171 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHhhhcc--------------cCCccccccCCCcchHHHHHHHHHHH
Q 042301 103 EELMAKAFMALVL--KGEAKEKNAKEFAEGLEKIEGEFKG--------------KSGLLFAEGESNIGYLELAFGWILYW 166 (227)
Q Consensus 103 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~--------------~~~~fl~~~G~~~t~aD~~l~~~l~~ 166 (227)
...+++.+..++. +++..+...+.+...|+.||++|.+ .+++|+ +|+++|+|||++++.+.+
T Consensus 8 ~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL--~Gd~fTlADi~l~p~L~~ 85 (134)
T cd03198 8 GEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFL--DGDELTLADCNLLPKLHI 85 (134)
T ss_pred HHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCC--CCCCCCHHHHHHHHHHHH
Confidence 3447777777633 4566788889999999999999986 346799 999999999999999987
Q ss_pred HHHHh-hhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChHHHHHHH
Q 042301 167 LPVWE-EAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARDQMLVYF 214 (227)
Q Consensus 167 ~~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~ 214 (227)
+.... ...++++ ...+|+|.+|++++.+||+|+++++..+.+...+
T Consensus 86 ~~~~~~~~~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~ 132 (134)
T cd03198 86 VKVVAKKYRNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELAY 132 (134)
T ss_pred HHHHHHhhcCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHh
Confidence 74321 1225554 3789999999999999999999999887766544
No 68
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-13 Score=108.96 Aligned_cols=196 Identities=16% Similarity=0.193 Sum_probs=145.4
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCCC--ceeEecCCC--CCChh----------------------hhhhCCCC---C
Q 042301 3 KEVTLLGFWASPFVFRVKVALQQKGVVD--YEYIEEDIF--NKSPR----------------------LLELNPVY---K 53 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~--y~~~~v~~~--~~~~~----------------------~~~~np~~---~ 53 (227)
+++.||..-.|||++|..+.=+.+|+ . ..+..|++. .+.-. |....|.. -
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgL-E~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRv 128 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGL-EPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRV 128 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcc-cccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCce
Confidence 57999999999999999999999999 4 112222221 11111 11112211 1
Q ss_pred ccceEEeCC---eeechhHHHHHHHhhhcC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHH
Q 042301 54 KVPVFIHGE---KVVNESLIILEYIDETWE-----QNPLLPRDPYQRAMARFWAKYSEELMAKAFMAL-V-LKGEAKEKN 123 (227)
Q Consensus 54 ~vP~L~~~~---~~i~eS~~I~~yL~~~~~-----~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 123 (227)
+||+|-|.. -+=.||.-|++-+...|. ...|+|.+ .|..++.+..++...+...+... + ...++-+++
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea 206 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEA 206 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeeecccchHHHHHHH
Confidence 799999743 345799999998876652 24688854 68889999888887776666665 3 356778899
Q ss_pred HHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHH----hhhcCCcccCCCCCchHHHHHHHhhcchh
Q 042301 124 AKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVW----EEAGSFQVLDPQKFPVITEWSTKFVNHPL 199 (227)
Q Consensus 124 ~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~----~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 199 (227)
.+.+-+.|+.+|..|++ +.|+ +|+++|.||+-+|+.|-++... .+| +..-+ .+||||..|...+-+.|.
T Consensus 207 ~~~lF~~Ld~lE~~L~~--~ryl--~Gd~lTEAD~RLftTlvRFD~VYvgHFKC-N~~rI--~dypnL~~yLr~LYq~pg 279 (324)
T COG0435 207 VKKLFEALDKLEQILSE--RRYL--TGDQLTEADIRLFTTLVRFDPVYVGHFKC-NLRRI--RDYPNLWGYLRDLYQLPG 279 (324)
T ss_pred HHHHHHHHHHHHHHhhc--Ceee--ccccchHhhhhhhheeEeecceEEeeeec-ccchh--hcCchHHHHHHHHhcCcc
Confidence 99999999999999999 9999 9999999999999999887532 112 33222 569999999999999999
Q ss_pred hhhcCCChH
Q 042301 200 IKENLPARD 208 (227)
Q Consensus 200 ~~~~~~~~~ 208 (227)
|..++.-..
T Consensus 280 ~~~T~df~h 288 (324)
T COG0435 280 FAETVDFDH 288 (324)
T ss_pred cccccchhH
Confidence 999886443
No 69
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.4e-14 Score=110.88 Aligned_cols=206 Identities=17% Similarity=0.194 Sum_probs=147.0
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCCC-ceeEecCC--CCCChhhhh------------------------------hC
Q 042301 3 KEVTLLGFWASPFVFRVKVALQQKGVVD-YEYIEEDI--FNKSPRLLE------------------------------LN 49 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~-y~~~~v~~--~~~~~~~~~------------------------------~n 49 (227)
+++.||..-.|||+.|..+..+.+|+.+ .-+..+.+ .++...|.. .+
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 4789999999999999999999999921 11112221 111111111 12
Q ss_pred CCC---CccceEEeC---CeeechhHHHHHHHhhhc---------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 042301 50 PVY---KKVPVFIHG---EKVVNESLIILEYIDETW---------EQNPLLPRDPYQRAMARFWAKYSEELMAKAFMAL- 113 (227)
Q Consensus 50 p~~---~~vP~L~~~---~~~i~eS~~I~~yL~~~~---------~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~- 113 (227)
|.. .+||||=|- ..+=.||.-|++.+.+.| +.-.|+|.+ .+++++.+..|+.+.+-..+...
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVYk~G 193 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVYKCG 193 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCceeeec
Confidence 211 179999874 345679999999998333 223578854 78999999999888777666655
Q ss_pred h-cchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHH----hhhcCCcccCCCCCchHH
Q 042301 114 V-LKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVW----EEAGSFQVLDPQKFPVIT 188 (227)
Q Consensus 114 ~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~----~~~~~~~~~~~~~~p~l~ 188 (227)
+ ...+.-+...+.+-+.|+.+|.+|+++.+.|+ +|+++|.||+.+++.+.++... ..+ +...+ +.+||+|.
T Consensus 194 FA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~--~G~~LTeaDirLy~TiIRFD~VY~~hFKC-n~~~i-r~~Yp~l~ 269 (319)
T KOG2903|consen 194 FAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFL--CGDTLTEADIRLYTTIIRFDEVYVQHFKC-NKKTI-RDEYPNLH 269 (319)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhcccceEe--eccccchhheeeeeeEEeehhhhheeeec-chhhh-hccCcHHH
Confidence 3 35667788889999999999999999545599 9999999999999999887532 122 33333 46999999
Q ss_pred HHHHHhhc-chhhhhcCCChHHHHHHH
Q 042301 189 EWSTKFVN-HPLIKENLPARDQMLVYF 214 (227)
Q Consensus 189 ~w~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (227)
.|..++-. .|.|..+..-..-...|+
T Consensus 270 ~~lk~iY~~~~~~~~Ttd~~hIk~~Y~ 296 (319)
T KOG2903|consen 270 NWLKNIYWNIPGFSSTTDFNHIKLHYY 296 (319)
T ss_pred HHHHHHHhhccchhhccchhHHhhhhc
Confidence 99999998 999998875433333333
No 70
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.52 E-value=3.1e-13 Score=96.72 Aligned_cols=102 Identities=14% Similarity=0.191 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc-----------hHHHHHHHHHHHHHHHHHHhhhcccCCcccccc
Q 042301 86 PRDPYQRAMARFWAKYSEELMAKAFMAL-----VLK-----------GEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEG 149 (227)
Q Consensus 86 p~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~ 149 (227)
|.++.+++++++|+.+..+.+.+.+... +.. ....+.....+.+.++.+|+.|++ ++|+ +
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~ 77 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAK--KGYF--V 77 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHcc--CCCC--C
Confidence 5788999999999999988888876533 111 122344567899999999999998 8999 9
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcch
Q 042301 150 ESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHP 198 (227)
Q Consensus 150 G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 198 (227)
|+++|+|||++++.+.++. .. +.. ...+|+|.+|++++.++|
T Consensus 78 Gd~~t~ADi~l~~~~~~~~---~~-~~~---~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 78 GDKLTAADIMMSFPLEAAL---AR-GPL---LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCCCCHHHHHHHHHHHHHH---Hc-Ccc---cccCchHHHHHHHHhcCC
Confidence 9999999999999988773 22 222 278999999999999986
No 71
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.52 E-value=3.5e-13 Score=96.86 Aligned_cols=107 Identities=12% Similarity=0.309 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHH-hhhcCCcccCCC
Q 042301 104 ELMAKAFMALVLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVW-EEAGSFQVLDPQ 182 (227)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~ 182 (227)
..+.+.+..++......+...+.+.+.|..||+.|+++ ++|+ +|+++|+||+++++.+.++... ....++.+ ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~-~~fl--~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~ 86 (121)
T cd03201 12 SKIFSTFVGFLKSKDSNDGTEQALLDELEALEDHLKEN-GPFI--NGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PE 86 (121)
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhcC-CCcc--CCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--cc
Confidence 33666666664433334667788999999999999842 6899 9999999999999988777543 22223433 37
Q ss_pred CCchHHHHHHHhhcchhhhhcCCChHHHHHHHH
Q 042301 183 KFPVITEWSTKFVNHPLIKENLPARDQMLVYFR 215 (227)
Q Consensus 183 ~~p~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (227)
.+|+|.+|++++.+||+|+++++..+++.+.++
T Consensus 87 ~~P~l~~w~~rl~~rps~~~t~~~~~~~~~~~~ 119 (121)
T cd03201 87 SLTSVKSYMKALFSRESFVKTKAEKEDVIAGWA 119 (121)
T ss_pred cchHHHHHHHHHHCCchhhhcCCCHHHHHHHhc
Confidence 899999999999999999999998887665543
No 72
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.51 E-value=1.2e-13 Score=99.23 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hcc-----hH-HHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHH
Q 042301 90 YQRAMARFWAKYSEELMAKAFMAL----VLK-----GE-AKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELA 159 (227)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~----~~~-----~~-~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~ 159 (227)
.+++.+++|+.++++.+.+.+... ..+ ++ ..+...+.+.+.|+.+|+.|++++++|+ +|+++|+|||+
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l--~G~~~t~ADi~ 79 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFC--FGDEPTLADIC 79 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCee--cCCcCCHHHHH
Confidence 478999999999987777543222 111 11 2233456789999999999985226799 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCC
Q 042301 160 FGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPA 206 (227)
Q Consensus 160 l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~ 206 (227)
+++.+.+.. .. +.++ ..+|+|++|++++.++|+|+++.+.
T Consensus 80 ~~~~~~~~~---~~-~~~~---~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 80 LVPQVYNAR---RF-GVDL---SPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred HHHHHHHHH---Hh-CCCc---ccCcHHHHHHHHHHhChhHHHhCcC
Confidence 999987762 22 4443 6799999999999999999998764
No 73
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.51 E-value=4.6e-13 Score=95.52 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh------cc--------hHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCc
Q 042301 88 DPYQRAMARFWAKYSEELMAKAFMALV------LK--------GEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNI 153 (227)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~--------~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~ 153 (227)
|+.+|+.+++|+.+++..+.+.+...+ .. .+..+...+++.+.|+.||+.|++ ++|+ +|+++
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l--~gd~~ 76 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAG--SPYV--AGDRF 76 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcC--CCcc--cCCCC
Confidence 467899999999998888887766551 11 233567788899999999999987 7899 99999
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhh
Q 042301 154 GYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLI 200 (227)
Q Consensus 154 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 200 (227)
|+|||++++.+.++.. .+.++ ...+|+|.+|++++.++|++
T Consensus 77 t~aDi~l~~~~~~~~~----~~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 77 TIADITAFVGLDFAKV----VKLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred CHHHHHHHHHhHHHHh----cCCCC--ccccHHHHHHHHHHHhccCC
Confidence 9999999999987732 24444 26799999999999999974
No 74
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.49 E-value=2.9e-13 Score=96.89 Aligned_cols=104 Identities=14% Similarity=0.232 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-----VLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILY 165 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~ 165 (227)
+++++.+|+.+..+.+.+..... ...+...+...+++.+.++.+|+.|++ ++|+ +|+++|+||+++++.+.
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~G~~~s~aDi~l~~~~~ 77 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEG--SDYV--AGDQLTIADLSLVATVS 77 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcc--CCee--CCCCcCHHHHHHHHHHH
Confidence 57889999988877777665544 123345667788999999999999987 7899 99999999999999998
Q ss_pred HHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcC
Q 042301 166 WLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENL 204 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
++.. ..+.+. ..+|+|.+|+++|.++|++++..
T Consensus 78 ~~~~---~~~~~~---~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 78 TLEA---LLPLDL---SKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred HHHH---hcCCCh---hhCchHHHHHHHHHcccchHHHH
Confidence 8732 123333 57999999999999999999854
No 75
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.48 E-value=5e-13 Score=96.82 Aligned_cols=109 Identities=15% Similarity=0.226 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHhhhccc-CCccccccCCCcchHHHHHHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-VL-KGEAKEKNAKEFAEGLEKIEGEFKGK-SGLLFAEGESNIGYLELAFGWILYWL 167 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~le~~L~~~-~~~fl~~~G~~~t~aD~~l~~~l~~~ 167 (227)
+++.+++.+..+.+ +...+... +. .....+...+.+.+.|..||+.|+++ +++|+ +|+++|+||+++++.+.++
T Consensus 3 e~~~vd~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l--~G~~~T~ADi~l~~~~~~~ 79 (126)
T cd03210 3 EAALIDMVNDGVED-LRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFI--VGDKISFADYNLFDLLDIH 79 (126)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCee--eCCCccHHHHHHHHHHHHH
Confidence 56778888777766 55555544 22 23445666778999999999999863 46899 9999999999999999887
Q ss_pred HHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChH
Q 042301 168 PVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARD 208 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
.. ..+ ..+ ..+|+|.+|+++|.++|++++++....
T Consensus 80 ~~---~~~-~~~--~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 80 LV---LAP-GCL--DAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred HH---hCh-Hhh--hcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 42 212 122 679999999999999999999876543
No 76
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.48 E-value=7.5e-13 Score=95.20 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hc--chHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-VL--KGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWL 167 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~ 167 (227)
+++.++++++.+.+ +...+..+ +. .....+.....+.+.+..||++|++ ++|+ +|+++|+||+++++.+.++
T Consensus 2 e~~~id~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~G~~~T~aDi~l~~~~~~~ 76 (121)
T cd03209 2 ERIRVDMLEQQAMD-LRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGD--RPWF--AGDKITYVDFLLYEALDQH 76 (121)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCC--CCCc--CCCCccHHHHHHHHHHHHH
Confidence 56788888888777 55555555 22 1234556678889999999999987 7899 9999999999999999887
Q ss_pred HHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChH
Q 042301 168 PVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARD 208 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
.. . ....+ ..+|+|.+|++++.++|++++++++..
T Consensus 77 ~~---~-~~~~~--~~~P~l~~~~~rv~~~p~vk~~~~~~~ 111 (121)
T cd03209 77 RI---F-EPDCL--DAFPNLKDFLERFEALPKISAYMKSDR 111 (121)
T ss_pred HH---h-Ccccc--ccChHHHHHHHHHHHCHHHHHHHhccc
Confidence 32 2 22222 679999999999999999999987664
No 77
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.46 E-value=1.2e-12 Score=96.13 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcchHHHH----HH-HHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-VLKGEAKE----KN-AKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWIL 164 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~-~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l 164 (227)
+.+.+++.++.+.+ +...+..+ +..++..+ .. .+.+.+.|+.||+.|.+++++|+ +|+++|+||+++++.+
T Consensus 3 e~a~iD~i~~~v~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l--~G~~~T~ADi~l~~~l 79 (137)
T cd03208 3 ERALIDMYVEGTAD-LMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFL--VGNKLSRADIHLLEAI 79 (137)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCee--eCCCCCHHHHHHHHHH
Confidence 56788888888777 44444444 33332222 22 33567899999999984347899 9999999999999999
Q ss_pred HHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChH
Q 042301 165 YWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARD 208 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
.++... ....+ ..+|+|.+|++++.++|++++++....
T Consensus 80 ~~~~~~----~~~~l--~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 80 LMVEEL----DPSLL--SDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHHHHh----chhhh--ccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 887322 11222 679999999999999999999887543
No 78
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.45 E-value=8.5e-13 Score=94.16 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hc-------chHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-----VL-------KGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLEL 158 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~ 158 (227)
+|+.+.+|+.+....+.+.+... +. ..+..+.....+.+.++.+|+.|++ ++|+ +|+++|+|||
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~G~~~t~aDi 77 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK--SKYL--AGDSFTLADL 77 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHccc--Cccc--CCCCccHHHH
Confidence 57888899988877776665442 11 1233456678899999999999987 8999 9999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcC
Q 042301 159 AFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENL 204 (227)
Q Consensus 159 ~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
++++.+.++... .. +.. ...+|++++|++++.++|++++++
T Consensus 78 ~l~~~~~~~~~~-~~-~~~---~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 78 SHLPYLQYLMAT-PF-AKL---FDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHHHHc-cc-hhh---hhcCchHHHHHHHHHhCHHHHhhC
Confidence 999998877321 11 111 257999999999999999998764
No 79
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.44 E-value=3.4e-13 Score=95.58 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hc---chHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-----VL---KGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGW 162 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~ 162 (227)
+|+.+++|+.+.+..+.+.+... +. .+...+....++.+.++.+|+.|++ ++|+ +|+++|+|||++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~G~~~t~aDi~l~~ 76 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAG--RDYL--AGDEYSIADIAIFP 76 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHcc--CCcc--cCCCCCeeeeeHHH
Confidence 36888999999888777765443 11 1334566788899999999999987 8999 99999999999999
Q ss_pred HHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcC
Q 042301 163 ILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENL 204 (227)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
.+.+... . +.+. ..++|++.+|++++.++|++++++
T Consensus 77 ~~~~~~~---~-~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 77 WVRRLEW---I-GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHHh---c-cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 9987732 2 3322 267999999999999999999865
No 80
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.44 E-value=1.8e-12 Score=91.31 Aligned_cols=99 Identities=16% Similarity=0.317 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hc------chHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL----VL------KGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAF 160 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l 160 (227)
+|+.+++|+.+..+.+.+.+... .. .....+...+.+.+.|+.+|+.|++ ++|+ +|+++|+||+++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~--~~~l--~g~~~t~aDi~~ 77 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAG--RPYL--AGDRFTLADIPL 77 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCC--CCcc--cCCCCCHHHHHH
Confidence 57889999999888888876543 11 1233456788999999999999997 8999 999999999999
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhh
Q 042301 161 GWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLI 200 (227)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~ 200 (227)
++++... ... +.. ..++|+|.+|++++.++|+|
T Consensus 78 ~~~~~~~---~~~-~~~---~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 78 GCSAYRW---FEL-PIE---RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHH---HHc-ccc---cccCchHHHHHHHHHhCCCC
Confidence 9888533 122 222 27899999999999999975
No 81
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.2e-11 Score=93.58 Aligned_cols=170 Identities=14% Similarity=0.181 Sum_probs=127.3
Q ss_pred CCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhcCCCCCCC-CCH
Q 042301 11 WASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETWEQNPLLP-RDP 89 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~~~~~l~p-~~~ 89 (227)
+....|..|..+|+.+++ ||..+..+ ..+| ++|.| +||.|..|.+.++|-.+|..+...+- ..|-. -+.
T Consensus 32 ~d~ascLAVqtfLrMcnL-Pf~v~~~~----Naef--mSP~G-~vPllr~g~~~~aef~pIV~fVeak~--~~l~s~lsE 101 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNL-PFNVRQRA----NAEF--MSPGG-KVPLLRIGKTLFAEFEPIVDFVEAKG--VTLTSWLSE 101 (257)
T ss_pred ccchhHHHHHHHHHHcCC-CceeeecC----Cccc--cCCCC-CCceeeecchhhhhhhHHHHHHHHhc--cchhhhhhh
Confidence 445679999999999999 99988654 2343 78977 99999999999999999999999874 33322 466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcch------------------------------------------HHHHHHHHH
Q 042301 90 YQRAMARFWAKYSEELMAKAFMAL-VLKG------------------------------------------EAKEKNAKE 126 (227)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~-~~~~------------------------------------------~~~~~~~~~ 126 (227)
.+++.++..++++++.+..+-..+ +.++ ...+.+.++
T Consensus 102 ~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~ 181 (257)
T KOG3027|consen 102 DQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQ 181 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHH
Confidence 789999999998887443322111 1111 123666888
Q ss_pred HHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCc---ccCCCCCchHHHHHHHhhcc
Q 042301 127 FAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQ---VLDPQKFPVITEWSTKFVNH 197 (227)
Q Consensus 127 ~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~---~~~~~~~p~l~~w~~~~~~~ 197 (227)
....++.|+..|+. ++|+ .|++||-+|..+|+.+..+.... .-+.+ .+ .+|+||-+++.|+.+.
T Consensus 182 vdkc~~aLsa~L~~--q~yf--~g~~P~elDAlvFGHlytilTt~-Lpn~ela~~l--kkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 182 VDKCCRALSAQLGS--QPYF--TGDQPTELDALVFGHLYTILTTR-LPNMELANIL--KKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHHHhcC--CCcc--CCCCccHHHHHHHhhhHHhhhhc-CCcHHHHHHH--HHhHHHHHHHHHHHHH
Confidence 89999999999998 9999 99999999999999997764321 10111 11 6799999999998764
No 82
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.41 E-value=2.1e-12 Score=92.89 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hc----chHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL----VL----KGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGW 162 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~ 162 (227)
+|+.+++|+.+++..+.+.+... .. .....+...+.+.+.|+.+|+.|+. ++|+ +|+++|+||+++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l--~G~~~siaDi~l~~ 76 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLK--RTYL--VGERLTLADIFVAG 76 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHcc--Ccee--ccCCccHHHHHHHH
Confidence 36889999999988888876644 11 1244667788899999999999997 8999 99999999999999
Q ss_pred HHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCCChH
Q 042301 163 ILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLPARD 208 (227)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
.+.++... ..+... ...+|++.+|++++.++|++++++.+.+
T Consensus 77 ~~~~~~~~--~~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 77 ALLLGFTY--VFDKEW--RAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHHHHH--HcCHHH--HHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 99876321 112222 1569999999999999999999887643
No 83
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.37 E-value=4.5e-12 Score=87.33 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=75.1
Q ss_pred HHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCC
Q 042301 72 LEYIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGES 151 (227)
Q Consensus 72 ~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~ 151 (227)
++||++.. .|+|.++.+.+.++.|++.....+.. ...+++.+.++.+|++|++ ++|+ +|+
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~-------------~~~~~~~~~l~~le~~L~~--~~fl--~Gd 60 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE-------------GSSKEKAAVLRALNSALGR--SPWL--VGS 60 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHHHHcC--CCcc--CCC
Confidence 36888873 39999999999999999976643431 1344666788899999998 8999 999
Q ss_pred CcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhc
Q 042301 152 NIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVN 196 (227)
Q Consensus 152 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 196 (227)
++|+|||++++.+.+. +... ..+|++.+|++++.+
T Consensus 61 ~~tiADi~l~~~l~~~-------~~~~---~~~p~l~~w~~r~~~ 95 (96)
T cd03200 61 EFTVADIVSWCALLQT-------GLAS---AAPANVQRWLKSCEN 95 (96)
T ss_pred CCCHHHHHHHHHHHHc-------cccc---ccChHHHHHHHHHHh
Confidence 9999999999887542 2222 679999999999975
No 84
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.37 E-value=7.2e-12 Score=90.57 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------hc----chHHHHHHHHHHHHHHHHHHhhh-cccCCccccccCCCcchHH
Q 042301 92 RAMARFWAKYSEELMAKAFMAL---------VL----KGEAKEKNAKEFAEGLEKIEGEF-KGKSGLLFAEGESNIGYLE 157 (227)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~l~~le~~L-~~~~~~fl~~~G~~~t~aD 157 (227)
++.+++|+.+....+.+.+... +. .++..+...+.+.+.++.+|+.| ++ ++|+ +|+++|+||
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~--~~~l--~Gd~~t~AD 77 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKD--KPFL--AGDEISIAD 77 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC--CCcc--cCCCCCHHH
Confidence 5667888888776666554322 11 23445667788999999999974 54 6899 999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhc--chhhhhcC
Q 042301 158 LAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVN--HPLIKENL 204 (227)
Q Consensus 158 ~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~--~~~~~~~~ 204 (227)
|++++.+.+.. . .+.+. ...+|+|.+|++++.+ ||+++.+.
T Consensus 78 i~l~~~~~~~~---~-~~~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 78 LSAVCEIMQPE---A-AGYDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHHHHH---h-cCCcc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 99999886662 2 24433 2779999999999999 99998854
No 85
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.36 E-value=2.1e-12 Score=90.10 Aligned_cols=76 Identities=12% Similarity=0.205 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcc
Q 042301 118 EAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNH 197 (227)
Q Consensus 118 ~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 197 (227)
+..+....++.+.++.+|+.|++ ++|+ +|+++|+|||++++.+.+.. .. +. ...+|++++|++++.++
T Consensus 26 ~~~~~~~~~~~~~l~~le~~l~~--~~~l--~g~~~t~aDi~~~~~~~~~~---~~-~~----~~~~p~l~~w~~~~~~~ 93 (103)
T cd03207 26 PARMAGFGSYDDVLAALEQALAK--GPYL--LGERFTAADVLVGSPLGWGL---QF-GL----LPERPAFDAYIARITDR 93 (103)
T ss_pred chhhhhhhhHHHHHHHHHHHHcc--CCcc--cCCccCHHHHHHHHHHHHHH---Hc-CC----CCCChHHHHHHHHHHcC
Confidence 34566678899999999999998 8999 99999999999999998873 22 32 26799999999999999
Q ss_pred hhhhhcCC
Q 042301 198 PLIKENLP 205 (227)
Q Consensus 198 ~~~~~~~~ 205 (227)
|+++++.+
T Consensus 94 p~~~~~~~ 101 (103)
T cd03207 94 PAFQRAAA 101 (103)
T ss_pred HHHHHHhc
Confidence 99998865
No 86
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.34 E-value=1.1e-11 Score=88.17 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hcch---HHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHH
Q 042301 90 YQRAMARFWAKYSEELMAKAFMAL-----VLKG---EAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFG 161 (227)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~ 161 (227)
.+|+++++|+.++++.+.+..... +... ...+...+.+.+.+..+|..|.. +++|+ +| ++|+||++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~l--~G-~fSiAD~~l~ 77 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPP-GAANL--FG-EWCIADTDLA 77 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCcc--cC-CccHHHHHHH
Confidence 579999999999999888762211 1111 23466788889999999999973 25899 99 5999999999
Q ss_pred HHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcCC
Q 042301 162 WILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENLP 205 (227)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~~ 205 (227)
+++.|+ ... +.++ . |++.+|++++.+||+|++.++
T Consensus 78 ~~~~~~---~~~-g~~l---~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 78 LMLNRL---VLN-GDPV---P--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHH---HHc-CCCC---C--HHHHHHHHHHHCCHHHHHHHh
Confidence 999887 343 6665 3 999999999999999998764
No 87
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.34 E-value=4.1e-12 Score=88.17 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcch
Q 042301 119 AKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHP 198 (227)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 198 (227)
..++...++.+.++.+|+.|++ ++|+ +|+++|+||+++++++.+. .. .+..+ .++|+|.+|++++.++|
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~--~~~l--~G~~~t~aDi~~~~~~~~~---~~-~~~~~---~~~p~l~~~~~~~~~~p 98 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAG--RDWL--AGDRPTIADVAVYPYVALA---PE-GGVDL---EDYPAIRRWLARIEALP 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc--CCcc--CCCCCCHHHHHHHHHHHHH---hc-cCCCh---hhCcHHHHHHHHHHhCc
Confidence 4567788999999999999998 7899 9999999999999988754 22 23332 67999999999999999
Q ss_pred hh
Q 042301 199 LI 200 (227)
Q Consensus 199 ~~ 200 (227)
++
T Consensus 99 ~~ 100 (100)
T cd03206 99 GF 100 (100)
T ss_pred CC
Confidence 75
No 88
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.30 E-value=1.7e-11 Score=84.06 Aligned_cols=71 Identities=24% Similarity=0.416 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcch
Q 042301 119 AKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHP 198 (227)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~ 198 (227)
..+.....+.+.|+.+|+.|++ ++|+ +|+++|+||+++++.+.++... +.... .+++|+|.+|++++.+||
T Consensus 25 ~~~~~~~~~~~~l~~le~~l~~--~~~l--~G~~~t~ADi~~~~~~~~~~~~----~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKRLKG--GPYL--VGDKLTIADIALFPMLDWLERL----GPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--SSSS--SBSS-CHHHHHHHHHHHHHHHH----TTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CCee--eccCCchhHHHHHHHHHHHHHh----CCCcc-cccCHHHHHHHHHHHcCC
Confidence 5677789999999999999997 9999 9999999999999999988433 22221 178999999999999997
No 89
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.30 E-value=9.9e-12 Score=80.72 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=49.8
Q ss_pred CCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhh
Q 042301 11 WASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDET 78 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 78 (227)
+.+++|.+++++|++.|+ ||+.+.... .. ..+|.| +||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elgl-pye~~~~~~----~~--~~~P~G-kVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNL-PFNVRCRAN----AE--FMSPSG-KVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCC-CcEEEecCC----cc--ccCCCC-cccEEEECCEEEeCHHHHHHHHhcC
Confidence 457789999999999999 999884321 11 167778 9999999999999999999999863
No 90
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.24 E-value=4.1e-11 Score=77.31 Aligned_cols=68 Identities=16% Similarity=0.364 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHH
Q 042301 118 EAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTK 193 (227)
Q Consensus 118 ~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 193 (227)
...+...+.+.+.|+.||+.|+. ++|+ +|++||+||+++++.+.++..... +.++ ...+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~--~~fl--~G~~~s~aD~~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLAD--GPFL--FGDRPSLADIALAPFLWRLRFVGP--DFDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--SSBT--TBSS--HHHHHHHHHHHHHHHCTH--TCCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCC--CCCCCCHHHHHHHHHHHHHHHhCc--CcCc--cccCHHHHHHHhC
Confidence 35678889999999999999999 7899 999999999999999999865432 2233 3789999999986
No 91
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.23 E-value=5.5e-11 Score=83.69 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc--------CCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCccc--CCCCCchH
Q 042301 118 EAKEKNAKEFAEGLEKIEGEFKGK--------SGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVL--DPQKFPVI 187 (227)
Q Consensus 118 ~~~~~~~~~~~~~l~~le~~L~~~--------~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~--~~~~~p~l 187 (227)
+..+....++.+.|+.+|+.|.++ +++|+ +|+++|+|||++++.+.++... +.+.. ...++|+|
T Consensus 25 ~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL--~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~l 98 (111)
T cd03204 25 EYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWL--CGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPNL 98 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcc--CCCCCCHHHHHHHHHHHHHHHc----CccccccccccChHH
Confidence 446778899999999999999752 12599 9999999999999999887432 32220 02579999
Q ss_pred HHHHHHhhcchhh
Q 042301 188 TEWSTKFVNHPLI 200 (227)
Q Consensus 188 ~~w~~~~~~~~~~ 200 (227)
.+|++++.+||+|
T Consensus 99 ~~w~~rv~aRpsf 111 (111)
T cd03204 99 EAYFERVLQRESF 111 (111)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999985
No 92
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.22 E-value=3.3e-11 Score=83.51 Aligned_cols=98 Identities=18% Similarity=0.332 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHH
Q 042301 88 DPYQRAMARFWAKYSEELMAKAFMALVLKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWL 167 (227)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~ 167 (227)
++..++.+++|+++.. .+..........+...+...+.+.+.|..+|++|++.+++|+ +|++||+||+++++.|..+
T Consensus 2 ~~~~~a~i~~W~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l--~G~~~T~AD~~v~~~l~~~ 78 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSV-AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFL--VGDKPTLADIAVFGFLASL 78 (99)
T ss_dssp --TTHHHHHHHHH-GH-CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSS--SSSS--HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccc-hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeee--cCCCCCHHHHHHHHHHHHH
Confidence 3456777888888441 000000000122345677788999999999999999544599 9999999999999999665
Q ss_pred HHHhhhcCCcccCCCCCchHHHHHHHhhc
Q 042301 168 PVWEEAGSFQVLDPQKFPVITEWSTKFVN 196 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 196 (227)
. . . ++ +..+|+|.+|+++|++
T Consensus 79 ~----~-~-~~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 79 R----W-A-DF--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp H----C-C-HH--TTTCHHHHHHHHHHHT
T ss_pred h----h-c-cc--ccccHHHHHHHHhhcC
Confidence 2 1 2 22 1579999999999974
No 93
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.21 E-value=4.5e-11 Score=83.38 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hc-----chHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-----VL-----KGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAF 160 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l 160 (227)
+|+.+++|+.+..+.+.+.+... +. .++..+...+++.+.++.||+.|++ ++|+ +|+++|+||+++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l--~g~~~slaDi~~ 77 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAG--RDFL--VGDALTIADIAL 77 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--Cccc--cCCCCCHHHHHH
Confidence 57899999999877777765543 11 1345677889999999999999987 7899 999999999999
Q ss_pred HHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhh
Q 042301 161 GWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFV 195 (227)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 195 (227)
++.+.++. . .+.+. .++|++.+|+++++
T Consensus 78 ~~~~~~~~---~-~~~~~---~~~p~l~~~~~~~~ 105 (105)
T cd03179 78 AAYTHVAD---E-GGFDL---ADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHhcc---c-cCCCh---HhCccHHHHHHhhC
Confidence 99998873 2 23332 67999999999874
No 94
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.17 E-value=2e-10 Score=81.67 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc-CCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcc
Q 042301 119 AKEKNAKEFAEGLEKIEGEFKGK-SGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNH 197 (227)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~-~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 197 (227)
..+...+.+.+.++.+|..+... +++|+ +|+ +|+||+++++.+.+. ... +.+. .|+|.+|++++.++
T Consensus 38 ~~~~~~~~~~~~~~~le~~l~~~~~~~yl--~Gd-~T~ADi~l~~~~~~~---~~~-~~~~-----~P~l~~~~~rv~~r 105 (114)
T cd03194 38 LSEAVQADIARIEAIWAECLARFQGGPFL--FGD-FSIADAFFAPVVTRF---RTY-GLPL-----SPAAQAYVDALLAH 105 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCC--CCC-CcHHHHHHHHHHHHH---HHc-CCCC-----CHHHHHHHHHHHCC
Confidence 34566666777777777777532 37899 999 999999999999887 232 4432 39999999999999
Q ss_pred hhhhhcCC
Q 042301 198 PLIKENLP 205 (227)
Q Consensus 198 ~~~~~~~~ 205 (227)
|++++.+.
T Consensus 106 Psv~~~~~ 113 (114)
T cd03194 106 PAMQEWIA 113 (114)
T ss_pred HHHHHHHh
Confidence 99998764
No 95
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.17 E-value=1.4e-10 Score=76.96 Aligned_cols=72 Identities=24% Similarity=0.321 Sum_probs=62.9
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 3 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
.+++||+.++||+|.+++.+|...|| +|+.+.++-.....++...++.. ++|++..||..|.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi-~y~~idi~~~~~~~~~~~~~g~~-~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGY-DFEEIPLGNDARGRSLRAVTGAT-TVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCC-CcEEEECCCChHHHHHHHHHCCC-CcCeEEECCEEEcCHHHHHHHhC
Confidence 46899999999999999999999999 99998887554445666667766 99999999999999999999984
No 96
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.15 E-value=4.8e-10 Score=78.16 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hc------chHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHH
Q 042301 91 QRAMARFWAKYSEELMAKAFMAL-VL------KGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWI 163 (227)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~ 163 (227)
++++++.+++..++ +...+... +. ..+..+...+.+.+.++.+|+.|++.+++|+ +|+++|+||++++++
T Consensus 2 e~~~v~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~--~G~~~s~aDi~l~~~ 78 (104)
T cd03192 2 EAARVDALVDTIAD-LRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYL--VGDKLTWADLVVFDV 78 (104)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCee--eCCCccHHHHHHHHH
Confidence 46788888888666 66666665 32 2445667788899999999999975346899 999999999999999
Q ss_pred HHHHHHHhhhcCCcccCCCCCchHHHHHHHh
Q 042301 164 LYWLPVWEEAGSFQVLDPQKFPVITEWSTKF 194 (227)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 194 (227)
+.++.... .... ...+|++.+|++++
T Consensus 79 ~~~~~~~~---~~~~--~~~~p~l~~~~~~~ 104 (104)
T cd03192 79 LDYLLYLD---PKLL--LKKYPKLKALRERV 104 (104)
T ss_pred HHHHHhhC---chhh--HHhChhHHHHHHhC
Confidence 98884321 1111 26799999999875
No 97
>PRK10638 glutaredoxin 3; Provisional
Probab=99.12 E-value=3e-10 Score=76.06 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=63.7
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCC-CChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN-KSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~-~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
|+ ++++|+.+.||+|.+++.+|.++|| +|+.+.++... ..+++...++.. ++|+++.||..|.+...+..+-.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi-~y~~~dv~~~~~~~~~l~~~~g~~-~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGV-SFQEIPIDGDAAKREEMIKRSGRT-TVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCC-CcEEEECCCCHHHHHHHHHHhCCC-CcCEEEECCEEEeCHHHHHHHHH
Confidence 67 8999999999999999999999999 99999887653 456788889988 99999999999999887777543
No 98
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.09 E-value=4.7e-10 Score=81.00 Aligned_cols=69 Identities=16% Similarity=0.349 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcc
Q 042301 120 KEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNH 197 (227)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 197 (227)
.+...+.+.+.|+.+|+.|++ ++|+ .|+++|+||+++++.+.+... ..+.++ ..++|++.+|+++|.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~--~~fl--~Gd~~t~AD~~l~~~l~~~~~---~~~~~~--~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKG--QPFL--GGAAPNYADYIVFGGFQWARI---VSPFPL--LEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCcc--CCCCCchhHHHHHHHHHHHHH---cCcccc--cccCChHHHHHHHHhcC
Confidence 467788899999999999998 8999 999999999999999988733 224443 26899999999999863
No 99
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.04 E-value=8.3e-10 Score=75.83 Aligned_cols=91 Identities=18% Similarity=0.362 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHh--------cchHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHH
Q 042301 96 RFWAKYSEELMAKAFMALV--------LKGEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWL 167 (227)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~ 167 (227)
+.|+.+....+.+.+.... ..++..+...+.+.+.++.||+.|++ ++|+ +|+++|+||+++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~--~g~~~t~aDi~~~~~l~~~ 77 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAG--RPYL--AGDRFSLADIALAPVLARL 77 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CCCC--CCCCcCHHHHHHHHHHHHH
Confidence 3455666655555444431 12455677788999999999999998 8999 9999999999999999998
Q ss_pred HHHhhhcCCcccCCCCCchHHHHHHHh
Q 042301 168 PVWEEAGSFQVLDPQKFPVITEWSTKF 194 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~p~l~~w~~~~ 194 (227)
.......+ . ...+|++.+|++++
T Consensus 78 ~~~~~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 78 DLLGPLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred HHhhhhhh--h--hccCccHHHHHHhC
Confidence 54322211 2 26799999999875
No 100
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.02 E-value=2.2e-09 Score=69.83 Aligned_cols=71 Identities=25% Similarity=0.302 Sum_probs=60.1
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
+++||+.+.||+|.+++-+|...|| +|+.+.++-......+....... ++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i-~~~~~~v~~~~~~~~~~~~~g~~-~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGI-SYEEIPLGKDITGRSLRAVTGAM-TVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCC-CcEEEECCCChhHHHHHHHhCCC-CcCeEEECCEEEeCHHHHHHHhC
Confidence 6899999999999999999999999 99998887543333444555655 89999999999999999999974
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.00 E-value=1.9e-09 Score=72.87 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcC----CcccCCCCCchHHHHHHHhh
Q 042301 120 KEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGS----FQVLDPQKFPVITEWSTKFV 195 (227)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~----~~~~~~~~~p~l~~w~~~~~ 195 (227)
.....+++.+.++.+|+.|++ ++|+ +|+++|+|||++++.+.++... .... ..+ ..+|++++|++++.
T Consensus 17 ~~~~~~~~~~~l~~le~~L~~--~~yl--~Gd~~t~aDi~l~~~l~~~~~~-~~~~~~~~~~~---~~~p~l~~~~~r~~ 88 (88)
T cd03193 17 TREIYSLAKKDLKALSDLLGD--KKFF--FGDKPTSLDATVFGHLASILYA-PLPNSALQLIL---KEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CCcc--CCCCCCHHHHHHHHHHHHHHhc-CCCChHHHHHH---HhCcHHHHHHHHhC
Confidence 346678899999999999998 8999 9999999999999999887321 1101 112 56999999999974
No 102
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.99 E-value=2.5e-09 Score=69.67 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=50.4
Q ss_pred CCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhh
Q 042301 11 WASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDET 78 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~ 78 (227)
..||+|.++.++|+..|+ +|+.+...- + ..+|.| ++|+|+++|..|.||..|++||.+.
T Consensus 14 s~sp~clk~~~~Lr~~~~-~~~v~~~~n----~---~~sp~g-kLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGA-PLKVVPSNN----P---WRSPTG-KLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCC-CEEEEecCC----C---CCCCCC-ccCEEEECCEEecChHHHHHHHHHc
Confidence 467999999999999999 998875431 1 256878 9999999999999999999999864
No 103
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.87 E-value=1.7e-08 Score=74.16 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCC-cccCCCCCchHHHHHHHhhc
Q 042301 121 EKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSF-QVLDPQKFPVITEWSTKFVN 196 (227)
Q Consensus 121 ~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~-~~~~~~~~p~l~~w~~~~~~ 196 (227)
++..+.+...++.+-+.++++ ++|+ +|++||+||+++++.+..+ ..+.++ ++ .++|+|.+|+++|++
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~~-~~Fl--aGd~ptIADisvyg~l~s~---e~~~~~~Dl---~~~p~I~~W~eRm~~ 145 (149)
T cd03197 78 DDVREWLYDALNTWVAALGKD-RQFH--GGSKPNLADLAVYGVLRSV---EGHPAFKDM---VEETKIGEWYERMDA 145 (149)
T ss_pred chHHHHHHHHHHHHHHHhcCC-CCcc--CCCCCCHHHHHHHHHHHHH---HHhccccch---hhCcCHHHHHHHHHH
Confidence 445666777776666666543 6899 9999999999999999887 333344 55 689999999999986
No 104
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=6.6e-07 Score=72.46 Aligned_cols=169 Identities=12% Similarity=0.099 Sum_probs=120.8
Q ss_pred CChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEe-CCeeechhHHHHHHHhhhcCCCCCCCC-CH
Q 042301 12 ASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIH-GEKVVNESLIILEYIDETWEQNPLLPR-DP 89 (227)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~-~~~~i~eS~~I~~yL~~~~~~~~l~p~-~~ 89 (227)
.++-|.++.++++.++- |-+++..+-. + .+|.| ++|+|++ +|..+.+-..|..+|...-.+-.+-+. ..
T Consensus 16 id~~sL~~l~y~kl~~~-~l~v~~ssN~----~---~s~sg-~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~ 86 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGA-PLKVVVSSNP----W---RSPSG-KLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSA 86 (313)
T ss_pred cChhHHHHHHHHHHhCC-CceeEeecCC----C---CCCCC-CCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHH
Confidence 57889999999999997 6666654422 1 46777 9999996 569999999999999884222122222 25
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcch-----------------------------H--------------HHHHHHH
Q 042301 90 YQRAMARFWAKYSEELMAKAFMAL-VLKG-----------------------------E--------------AKEKNAK 125 (227)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-----------------------------~--------------~~~~~~~ 125 (227)
.+++....|+.++++.+.+++... +.+. . ..+....
T Consensus 87 kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~ 166 (313)
T KOG3028|consen 87 KQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYK 166 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHH
Confidence 678888889999998888876654 2110 0 1133355
Q ss_pred HHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHh-h--hcCCcccCCCCCchHHHHHHHhhc
Q 042301 126 EFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWE-E--AGSFQVLDPQKFPVITEWSTKFVN 196 (227)
Q Consensus 126 ~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~-~--~~~~~~~~~~~~p~l~~w~~~~~~ 196 (227)
...+++..|.+.|+. +.|+ +|++||.-|+.++..+..+-... . -.-..+ ..++||-+|++++..
T Consensus 167 ~Aska~~~LS~~Lgs--~kff--Fgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l---~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 167 DASKALNLLSTLLGS--KKFF--FGDKPSSLDALLFSYLAILLQVALPNDSLQVHL---LAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHHhcC--ceEe--eCCCCchHHHHHHHHHHHHHhccCCchhHHHHH---HhcchHHHHHHHHHH
Confidence 567788889999999 9999 99999999999999998741110 0 001122 349999999999986
No 105
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.79 E-value=2.5e-08 Score=64.95 Aligned_cols=68 Identities=26% Similarity=0.303 Sum_probs=56.6
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhCCCCCccceEEeCCeeechhHHHHH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILE 73 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~ 73 (227)
+++||+.+.||+|.+++.+|..+|| +|+.+.++-. ...+++.++++.. ++|++..||..|.+-.....
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi-~~~~~di~~~~~~~~el~~~~g~~-~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGL-PYVEINIDIFPERKAELEERTGSS-VVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCC-ceEEEECCCCHHHHHHHHHHhCCC-CcCEEEECCEEEeCHHHHHh
Confidence 6899999999999999999999999 9999987643 2345678888887 99999999988776655443
No 106
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.77 E-value=2.5e-08 Score=66.32 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=48.5
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeec
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVN 66 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~ 66 (227)
+++||+.++||+|.+++-+|..+|| +|+.+.++-.....+....++.. +||+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI-~~~~idi~~~~~~~~~~~~~g~~-~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGF-DFEMINVDRVPEAAETLRAQGFR-QLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCC-ceEEEECCCCHHHHHHHHHcCCC-CcCEEEECCEEEe
Confidence 4899999999999999999999999 99999887543222333446766 9999998876544
No 107
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.74 E-value=1.8e-08 Score=72.84 Aligned_cols=70 Identities=9% Similarity=0.018 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHH-hh--hcCCcccCCCCCchHHHHHHHhh
Q 042301 119 AKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVW-EE--AGSFQVLDPQKFPVITEWSTKFV 195 (227)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~-~~--~~~~~~~~~~~~p~l~~w~~~~~ 195 (227)
..++....+.+.|+.|+..|++ ++|+ +|++||.+|+++++++.++... .. .....+ .++|||.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~--~~~l--~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~---~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGT--QPYF--FGDQPTELDALVFGHLFTILTTQLPNDELAEKV---KKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCC--CCCC--CCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHH---HhCcHHHHHHHhcC
Confidence 4577788899999999999999 8999 9999999999999999877421 00 111112 67999999999974
No 108
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.73 E-value=4.5e-08 Score=63.34 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=55.7
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCC-CChhhhhhCCCCCccceEEeCCeee--chhHHHHHHH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN-KSPRLLELNPVYKKVPVFIHGEKVV--NESLIILEYI 75 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~-~~~~~~~~np~~~~vP~L~~~~~~i--~eS~~I~~yL 75 (227)
+++||+.++||+|.+++.+|...|+ +|..+.++-.. ..+++.+.++.. .+|+++.+|..+ +++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i-~~~~vdi~~~~~~~~~~~~~~~~~-~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGI-AFEEIDVEKDSAAREEVLKVLGQR-GVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCC-eEEEEeccCCHHHHHHHHHHhCCC-cccEEEECCEEEeeCCHHHHHHHh
Confidence 4789999999999999999999999 99988776432 234566778877 999999988777 5666666654
No 109
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.73 E-value=2.3e-07 Score=64.37 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----hcc---hHHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHH
Q 042301 88 DPYQRAMARFWAKYSEELMAKAFMAL-----VLK---GEAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELA 159 (227)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~ 159 (227)
|..+||+++++..+..+.|.+.-... +.. ..-.+.....+.+.+...+..|.. +++|| +|+ .||||..
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~L--FGe-wsIAD~d 76 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNL--FGE-WSIADAD 76 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SST--TSS---HHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCc--ccc-chHHHHH
Confidence 45789999999999998887754443 222 223566677778888888888876 48999 996 9999999
Q ss_pred HHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhhcC
Q 042301 160 FGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKENL 204 (227)
Q Consensus 160 l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~~~ 204 (227)
+++++.++ ..+ |.++ -+.+..|.++..++|++++.+
T Consensus 77 lA~ml~Rl---~~~-gd~v-----P~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 77 LALMLNRL---VTY-GDPV-----PERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHHHH---HTT-T---------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHH---HHc-CCCC-----CHHHHHHHHHHHCCHHHHHHH
Confidence 99999988 333 6554 468999999999999998864
No 110
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.71 E-value=4.1e-08 Score=63.38 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=52.8
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhCCCCCccceEEeCCeeechh
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGEKVVNES 68 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~np~~~~vP~L~~~~~~i~eS 68 (227)
.+++|+.++||+|.+++.+|.++|+ +|+.+.++.. ...+++.+.||.+ ++|+++++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i-~~~~~~i~~~~~~~~~~~~~~~~~-~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGI-PFEEVDVDEDPEALEELKKLNGYR-SVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCC-CeEEEeCCCCHHHHHHHHHHcCCc-ccCEEEECCEEEecC
Confidence 3789999999999999999999999 9999888754 2345677888987 999999988766553
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.66 E-value=1.2e-07 Score=60.93 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=58.5
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCC-CChhhhhhCCCCCccceEEeCCeeechhHHHHHH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN-KSPRLLELNPVYKKVPVFIHGEKVVNESLIILEY 74 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~-~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~y 74 (227)
++++|+.++||+|.+++.+|..+|+ +|+.+.++-.. ...++...++.. ++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i-~~~~~di~~~~~~~~~l~~~~~~~-~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGI-EFEEIDILEDGELREELKELSGWP-TVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-cEEEEECCCCHHHHHHHHHHhCCC-CcCEEEECCEEEecHHHHHHh
Confidence 3789999999999999999999999 99988776432 345667788877 999999999999999887764
No 112
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.64 E-value=1.2e-07 Score=69.50 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcC-----CcccCCCCCchHHHHHHH
Q 042301 119 AKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGS-----FQVLDPQKFPVITEWSTK 193 (227)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~-----~~~~~~~~~p~l~~w~~~ 193 (227)
..++..++..+.++.||+.|++ ++|+ +|++||.+|+.+++.+..+... ..+ ..+ .++|||.+|++|
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~--~~~~--~Gd~~t~~D~~~~~~l~~~~~~--~~~~~~l~~~~---~~~pnL~~~~~r 131 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGE--SQFF--FGDTPTSLDALVFGYLAPLLKA--PLPNNKLQNHL---KQCPNLCRFCDR 131 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCC--CCcC--CCCCCcHHHHHHHHHHHHHHhc--cCCChHHHHHH---HHCcHHHHHHHH
Confidence 4577788899999999999999 8999 9999999999999998766311 111 112 679999999999
Q ss_pred hhc
Q 042301 194 FVN 196 (227)
Q Consensus 194 ~~~ 196 (227)
|.+
T Consensus 132 i~~ 134 (137)
T cd03212 132 ILS 134 (137)
T ss_pred HHH
Confidence 975
No 113
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.62 E-value=4.4e-07 Score=62.51 Aligned_cols=66 Identities=17% Similarity=0.317 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHh
Q 042301 118 EAKEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKF 194 (227)
Q Consensus 118 ~~~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 194 (227)
+..+.....+.+.|+.+|+.|++ ++| +++|+|||++++.+.+..... .+.+. ..++|+|.+|+++|
T Consensus 33 ~~~~~~~~~~~~~l~~le~~L~~--~~~-----d~~TlADi~l~~~l~~~~~~~--~~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 33 PWLERQRGKIERALDALEAELAK--LPL-----DPLDLADIAVACALGYLDFRH--PDLDW--RAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh--CCC-----CCCCHHHHHHHHHHHHHHhHc--cCcch--hhhChHHHHHHHhC
Confidence 45677789999999999999987 665 789999999999998884321 12222 26799999999985
No 114
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.53 E-value=3e-07 Score=60.11 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=50.2
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCC-CChhhhhhC-CCCCccceEEe-CCeeechhH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN-KSPRLLELN-PVYKKVPVFIH-GEKVVNESL 69 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~-~~~~~~~~n-p~~~~vP~L~~-~~~~i~eS~ 69 (227)
+++||+.++||+|++++-.|...|+ +|+.+.++-.. ....+.++| +.. .+|+++. +|..+.++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~-~~~~idi~~~~~~~~~~~~~~~~~~-~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGA-AYEWVDIEEDEGAADRVVSVNNGNM-TVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCC-ceEEEeCcCCHhHHHHHHHHhCCCc-eeCEEEECCCeEecCCC
Confidence 3789999999999999999999999 99988776442 334556676 766 8999974 667766554
No 115
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=8.5e-07 Score=58.77 Aligned_cols=69 Identities=28% Similarity=0.290 Sum_probs=54.2
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCC--CChhhhh-hCCCCCccceEEeCCeeechhHHHHHH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFN--KSPRLLE-LNPVYKKVPVFIHGEKVVNESLIILEY 74 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~--~~~~~~~-~np~~~~vP~L~~~~~~i~eS~~I~~y 74 (227)
.+++|+.+.||||.+++-+|..+|+ +|+.+.++... ...++.. .++.. +||+++.|+..+.....+-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~-~~~~i~~~~~~~~~~~~~~~~~~g~~-tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGV-DYEEIDVDDDEPEEAREMVKRGKGQR-TVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCC-CcEEEEecCCcHHHHHHHHHHhCCCC-CcCEEEECCEEEeCcccHHHH
Confidence 4899999999999999999999999 99999887654 3334443 44666 999999999877665444444
No 116
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.45 E-value=9.3e-07 Score=57.63 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=55.0
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhh-CCCCCccceEEeCCeeechhHHHHHHH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLEL-NPVYKKVPVFIHGEKVVNESLIILEYI 75 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~-np~~~~vP~L~~~~~~i~eS~~I~~yL 75 (227)
+++||+.+.||+|.+++-+|..+|| +|+.+.++.. ....++... +... .+|+++.+|..+.+...+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i-~~~~i~i~~~~~~~~~~~~~~~~~~-~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGV-DYEEIDVDGDPALREEMINRSGGRR-TVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-cEEEEECCCCHHHHHHHHHHhCCCC-ccCEEEECCEEEeChHHHHHHH
Confidence 3789999999999999999999999 9999888753 122333333 3332 6999999999999988887764
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.45 E-value=8.4e-07 Score=58.57 Aligned_cols=71 Identities=23% Similarity=0.204 Sum_probs=57.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
+++|+.+.||+|.+++-+|..+|| +|+.+.++.. ....++....... .+|+++.+|..+.+...+..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i-~~~~~di~~~~~~~~~~~~~~g~~-~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGV-TFTEIRVDGDPALRDEMMQRSGRR-TVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCC-CcEEEEecCCHHHHHHHHHHhCCC-CcCEEEECCEEEcChHHHHHHHHc
Confidence 479999999999999999999999 9999988754 2334455555555 899999999999888877776543
No 118
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.42 E-value=1.5e-06 Score=58.28 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=60.2
Q ss_pred ceEEeccCCChHHHHHHHHHHH-----cCCCCceeEecCCCC-CChhhhhhCCC--CCccceEEeCCeeechhHHHHHHH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQ-----KGVVDYEYIEEDIFN-KSPRLLELNPV--YKKVPVFIHGEKVVNESLIILEYI 75 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~-----~gi~~y~~~~v~~~~-~~~~~~~~np~--~~~vP~L~~~~~~i~eS~~I~~yL 75 (227)
.+++|+.++||+|.+++-+|.. .|+ +|+.+.++-.. ..+++...... . .+|.+..||..+.+...|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i-~~~~idi~~~~~~~~el~~~~~~~~~-~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDF-DYRYVDIHAEGISKADLEKTVGKPVE-TVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCC-cEEEEECCCChHHHHHHHHHHCCCCC-cCCEEEECCEEEcCHHHHHHHH
Confidence 3899999999999999999999 899 99998887431 12344443322 3 7999999999999999999999
Q ss_pred hhhcC
Q 042301 76 DETWE 80 (227)
Q Consensus 76 ~~~~~ 80 (227)
.+.++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 87653
No 119
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.42 E-value=6.4e-07 Score=58.12 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=44.5
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCe
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEK 63 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~ 63 (227)
+++|+.+.||+|.+++-+|..+|| +|+.+.++-.....+.....+.. .||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i-~~~~~di~~~~~~~~~~~~~g~~-~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGI-AFEEINIDEQPEAIDYVKAQGFR-QVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCC-ceEEEECCCCHHHHHHHHHcCCc-ccCEEEECCC
Confidence 479999999999999999999999 99999887543223333344555 8999998653
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.38 E-value=5.7e-07 Score=56.11 Aligned_cols=59 Identities=27% Similarity=0.348 Sum_probs=48.4
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhCCCCCccceEEeCCeee
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGEKVV 65 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~np~~~~vP~L~~~~~~i 65 (227)
+++|+.+.||+|.+++-+|..+|+ +|+.+.++.. ...+++.+..... ++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i-~y~~~dv~~~~~~~~~l~~~~g~~-~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGI-PYEEVDVDEDEEAREELKELSGVR-TVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTB-EEEEEEGGGSHHHHHHHHHHHSSS-SSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCC-eeeEcccccchhHHHHHHHHcCCC-ccCEEEECCEEC
Confidence 579999999999999999999999 9999998865 3445555554545 899999988764
No 121
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.29 E-value=6.9e-06 Score=56.71 Aligned_cols=70 Identities=23% Similarity=0.150 Sum_probs=56.3
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCCh----hhhhhCCCCCccceEEeCCeeechhHHHHHH
Q 042301 3 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSP----RLLELNPVYKKVPVFIHGEKVVNESLIILEY 74 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~----~~~~~np~~~~vP~L~~~~~~i~eS~~I~~y 74 (227)
.++++|+.++||||.+++-+|...|| +|+.+.++-..... .+...+... ++|.+..+|..|.+...+...
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i-~~~~vdid~~~~~~~~~~~l~~~tg~~-tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGV-NPAVHEIDKEPAGKDIENALSRLGCSP-AVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-CCEEEEcCCCccHHHHHHHHHHhcCCC-CcCeEEECCEEEcCHHHHHHH
Confidence 46899999999999999999999999 99999887543222 234445555 899999999998888776664
No 122
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.28 E-value=4.7e-06 Score=56.00 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=57.0
Q ss_pred eEEeccCCChHHHHHHHHHHHcC-----CCCceeEecCCCC-CChhhhhhCCC--CCccceEEeCCeeechhHHHHHHHh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKG-----VVDYEYIEEDIFN-KSPRLLELNPV--YKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~g-----i~~y~~~~v~~~~-~~~~~~~~np~--~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
+++|+.++||+|.+++-+|..++ + +|+.+.++... ..+++...... . .||++..||..+.++..|.+++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i-~~~~idi~~~~~~~~~l~~~~g~~~~-tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADF-EFRYIDIHAEGISKADLEKTVGKPVE-TVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCC-cEEEEECCCCHHHHHHHHHHhCCCCC-CcCeEEECCEEecCHHHHHHHHH
Confidence 58999999999999999999984 5 67776665322 12334444332 3 79999999999999999999988
Q ss_pred hhcC
Q 042301 77 ETWE 80 (227)
Q Consensus 77 ~~~~ 80 (227)
+.+.
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8653
No 123
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.27 E-value=7.6e-06 Score=54.16 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=59.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCCh----hhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSP----RLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~----~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
++++|+.++||+|.+++-+|...++ +|+.+.++...... .+.+.+... .+|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~g~~-~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGV-KPAVVELDQHEDGSEIQDYLQELTGQR-TVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCC-CcEEEEEeCCCChHHHHHHHHHHhCCC-CCCeEEECCEEEcCHHHHHHHHHc
Confidence 3789999999999999999999999 99999888654322 344555555 899999999999999999887654
No 124
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.01 E-value=5.2e-05 Score=50.26 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=56.7
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCC--ceeEecCCCCCChh----hhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVD--YEYIEEDIFNKSPR----LLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~--y~~~~v~~~~~~~~----~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
+++|+.++||+|.+++-+|...++ + |+.+.++......+ +....... .+|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i-~~~~~~~~v~~~~~~~~~~~~l~~~~g~~-~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNV-KPAYEVVELDQLSNGSEIQDYLEEITGQR-TVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC-CCCCEEEEeeCCCChHHHHHHHHHHhCCC-CCCeEEECCEEEcCHHHHHHHHHc
Confidence 478999999999999999999999 8 88888876533332 44445555 799999999999999888876654
No 125
>PHA03050 glutaredoxin; Provisional
Probab=97.96 E-value=6.5e-05 Score=52.66 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=54.4
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCC--CceeEecCCCCC----ChhhhhhCCCCCccceEEeCCeeechhHHHHH
Q 042301 3 KEVTLLGFWASPFVFRVKVALQQKGVV--DYEYIEEDIFNK----SPRLLELNPVYKKVPVFIHGEKVVNESLIILE 73 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~--~y~~~~v~~~~~----~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~ 73 (227)
+++++|..++||||.+++-+|...||. +|+.+.++-... ..++.+.+... +||.+..+|..|.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~-tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGR-TVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCC-CcCEEEECCEEEeChHHHHH
Confidence 468999999999999999999999992 366666663222 34566666665 89999999988888876665
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.94 E-value=4.8e-05 Score=52.28 Aligned_cols=71 Identities=20% Similarity=0.147 Sum_probs=53.4
Q ss_pred cceEEecc-----CCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHH
Q 042301 3 KEVTLLGF-----WASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYI 75 (227)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL 75 (227)
+++.+|.- +.||||.+++-+|..+|| +|+.+.++-. ....++...+... ++|.+..+|..|.+...+.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i-~~~~~di~~~~~~~~~l~~~tg~~-tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGV-PFAYVNVLEDPEIRQGIKEYSNWP-TIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHhCCC-CCCEEEECCEEEeChHHHHHHH
Confidence 35778854 889999999999999999 9998877522 1222344556655 8999999999888887776643
No 127
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.91 E-value=6.1e-05 Score=48.69 Aligned_cols=56 Identities=25% Similarity=0.401 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHcCCCC---ceeEecCCCCCChhhhhhCCCCCccceEEe-CCeeechhHHHHHHH
Q 042301 11 WASPFVFRVKVALQQKGVVD---YEYIEEDIFNKSPRLLELNPVYKKVPVFIH-GEKVVNESLIILEYI 75 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~---y~~~~v~~~~~~~~~~~~np~~~~vP~L~~-~~~~i~eS~~I~~yL 75 (227)
..+|-|..+.++|..++. + |+.+..+- +. ++|.| ++|+|++ ++..+.+-..|++||
T Consensus 12 sid~ecLa~~~yl~~~~~-~~~~~~vv~s~n----~~---~Sptg-~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 12 SIDPECLAVIAYLKFAGA-PEQQFKVVPSNN----PW---LSPTG-ELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred ccCHHHHHHHHHHHhCCC-CCceEEEEEcCC----CC---cCCCC-CCCEEEECCCcEEECHHHHHHhh
Confidence 368999999999999999 8 88776542 22 68888 9999999 899999999999998
No 128
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.89 E-value=7e-05 Score=50.71 Aligned_cols=70 Identities=21% Similarity=0.113 Sum_probs=54.2
Q ss_pred ceEEecc-----CCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHH
Q 042301 4 EVTLLGF-----WASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYI 75 (227)
Q Consensus 4 ~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL 75 (227)
++++|.- ++||||.+++-+|...|| +|+.+.++-. ....++.+.+... ++|.+..+|..|.+...+.+..
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i-~y~~idv~~~~~~~~~l~~~~g~~-tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGV-DFGTFDILEDEEVRQGLKEYSNWP-TFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCC-CeEEEEcCCCHHHHHHHHHHhCCC-CCCEEEECCEEEeCHHHHHHHH
Confidence 5677754 699999999999999999 9999987643 1223344556655 8999999999998888877754
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.64 E-value=0.00021 Score=61.94 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=53.7
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhh-hh--------CCCCCccceEEeCCeeechhHHH
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLL-EL--------NPVYKKVPVFIHGEKVVNESLII 71 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~-~~--------np~~~~vP~L~~~~~~i~eS~~I 71 (227)
|. ++++|+.++||+|.+++-+|...|| +|+.+.++-.....++. .. .... .||++..||..|.+-..+
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi-~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~-tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDI-PFTQISLDDDVKRAEFYAEVNKNILLVEEHIR-TVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCC-CeEEEECCCChhHHHHHHHHhhccccccCCCC-ccCeEEECCEEEeCchHH
Confidence 66 7999999999999999999999999 99999887332222322 22 2444 799999988888777666
Q ss_pred HH
Q 042301 72 LE 73 (227)
Q Consensus 72 ~~ 73 (227)
..
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 55
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.52 E-value=0.00044 Score=51.11 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=53.6
Q ss_pred eEEeccC------CChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhCCC----CCccceEEeCCeeechhHHHHH
Q 042301 5 VTLLGFW------ASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPV----YKKVPVFIHGEKVVNESLIILE 73 (227)
Q Consensus 5 ~~Ly~~~------~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~np~----~~~vP~L~~~~~~i~eS~~I~~ 73 (227)
++||..+ ++|+|.+++-+|+.+|| +|+.+.++.. ...+++.+.... . .+|.+..+|..|.+...+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V-~~~e~DVs~~~~~~~EL~~~~g~~~~~~-tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRV-KFDERDVSMDSGFREELRELLGAELKAV-SLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCC-cEEEEECCCCHHHHHHHHHHhCCCCCCC-CCCEEEECCEEEecHHHHHH
Confidence 6899988 89999999999999999 9999988764 223445444332 4 89999999988888877666
Q ss_pred H
Q 042301 74 Y 74 (227)
Q Consensus 74 y 74 (227)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 4
No 131
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.37 E-value=0.0008 Score=48.71 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchh
Q 042301 120 KEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPL 199 (227)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 199 (227)
.+....+++..|..+|..+.. .... .| ++|+-||.+|+.|+.+ .-..|..+ -|+|.+|+++|.+.-.
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~--~~~~--n~-~LS~dDi~lFp~LR~L---tivkgi~~-----P~~V~~Y~~~~s~~t~ 123 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLAS--PNAV--NG-ELSIDDIILFPILRSL---TIVKGIQW-----PPKVRAYMDRMSKATG 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC--TTBT--TS-S--HHHHHHHHHHHHH---CTCTTS--------HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcc--cccc--CC-CCCHHHHHHHHHHhhh---hhccCCcC-----CHHHHHHHHHHHHHcC
Confidence 467788999999999999986 4555 44 8999999999999988 33345544 5789999999988654
Q ss_pred h
Q 042301 200 I 200 (227)
Q Consensus 200 ~ 200 (227)
+
T Consensus 124 V 124 (132)
T PF04399_consen 124 V 124 (132)
T ss_dssp -
T ss_pred C
Confidence 4
No 132
>PRK10824 glutaredoxin-4; Provisional
Probab=97.22 E-value=0.0019 Score=45.71 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=53.6
Q ss_pred ceEEecc-----CCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHH
Q 042301 4 EVTLLGF-----WASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYI 75 (227)
Q Consensus 4 ~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL 75 (227)
++.+|.- +.||||.++.-+|...|+ +|+.+.++-. .....+...+... +||-+..+|..|-+...+....
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i-~~~~idi~~d~~~~~~l~~~sg~~-TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGE-RFAYVDILQNPDIRAELPKYANWP-TFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCC-CceEEEecCCHHHHHHHHHHhCCC-CCCeEEECCEEEcChHHHHHHH
Confidence 4667754 589999999999999999 9998877533 2233444556555 9999999999998888777753
No 133
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.02 E-value=0.0032 Score=45.26 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchh
Q 042301 120 KEKNAKEFAEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPL 199 (227)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~ 199 (227)
......+++..|..++..+.. .... . .++|+-|+.+|++|+.+. -..|..+ -|+|.+|+++|.+.-.
T Consensus 58 t~~~i~~l~~~L~~l~~ll~~--~~~~--n-~~ls~DDi~lFp~LR~Lt---~vkgi~~-----P~~V~~Y~~~~s~~t~ 124 (128)
T cd03199 58 TPQYIAALNALLEELDPLILS--SEAV--N-GQLSTDDIILFPILRNLT---LVKGLVF-----PPKVKAYLERMSALTK 124 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHcC--cccc--C-CcCCHHHHHHHHHHhhhh---hhcCCCC-----CHHHHHHHHHHHHHhC
Confidence 356788899999999999965 3444 4 479999999999999883 3334444 4789999999987643
No 134
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.00064 Score=59.30 Aligned_cols=115 Identities=10% Similarity=0.120 Sum_probs=78.3
Q ss_pred CeeechhHHHHHHHhhhc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhhcc
Q 042301 62 EKVVNESLIILEYIDETW-EQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALVLKGEAKEKNAKEFAEGLEKIEGEFKG 140 (227)
Q Consensus 62 ~~~i~eS~~I~~yL~~~~-~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 140 (227)
+..+.++..+..|..... +.+.+++.+ .++.+++.|++++...- ...+...+..++..|.-
T Consensus 45 ~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~~-----------------~~~~s~~~~~ld~~l~~ 106 (712)
T KOG1147|consen 45 GRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTFS-----------------FDEISSSLSELDKFLVL 106 (712)
T ss_pred cccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhcc-----------------hHHHHHHHHHHHhhhhH
Confidence 456666666677766444 234588877 78999999999876611 12577788888889988
Q ss_pred cCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhhh
Q 042301 141 KSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIKE 202 (227)
Q Consensus 141 ~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~~ 202 (227)
..|| +|.++|+||+++|+.+..-.-....... ...+-++.+|++-.+..++...
T Consensus 107 --~t~l--vg~sls~Ad~aiw~~l~~n~~~~~~lk~----~k~~~~v~Rw~~~~~~~~a~~~ 160 (712)
T KOG1147|consen 107 --RTFL--VGNSLSIADFAIWGALHSNGMRQEQLKA----KKDYQNVERWYDLPEFQEAHNK 160 (712)
T ss_pred --HHHh--hccchhHHHHHHHHHHhcccchHHHHHh----hCCchhhhhhcCcHhHHHHHHH
Confidence 8999 9999999999999999753111111111 1457789999984443333333
No 135
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0055 Score=42.48 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=57.1
Q ss_pred cceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhh----hhCCCCCccceEEeCCeeechhHHHHHHH
Q 042301 3 KEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLL----ELNPVYKKVPVFIHGEKVVNESLIILEYI 75 (227)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~----~~np~~~~vP~L~~~~~~i~eS~~I~~yL 75 (227)
++..+|.-++||+|.+++-+|...|+ ++..+.+|-.....++. ++.-.. +||.+..+|..|-....+..+=
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v-~~~vvELD~~~~g~eiq~~l~~~tg~~-tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGV-NPKVVELDEDEDGSEIQKALKKLTGQR-TVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCC-CCEEEEccCCCCcHHHHHHHHHhcCCC-CCCEEEECCEEEcCHHHHHHHH
Confidence 46788999999999999999999999 99999888764444443 344444 8999999999998888777653
No 136
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0053 Score=39.25 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=47.4
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCC-----------CCChhhhhh--CCCCCccceEEe-CCeeec
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF-----------NKSPRLLEL--NPVYKKVPVFIH-GEKVVN 66 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-----------~~~~~~~~~--np~~~~vP~L~~-~~~~i~ 66 (227)
|+ +++||+...||-|-...-.|+-.++ +|+.+.+.-+ +..++|-.. |..- -+|.|.. ||.+|.
T Consensus 1 ms-kp~lfgsn~Cpdca~a~eyl~rl~v-~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyi-GIPall~~d~~vVl 77 (85)
T COG4545 1 MS-KPKLFGSNLCPDCAPAVEYLERLNV-DYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYI-GIPALLTDDGKVVL 77 (85)
T ss_pred CC-CceeeccccCcchHHHHHHHHHcCC-CceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcc-cceEEEeCCCcEEE
Confidence 77 7899999999999999999999999 9999987543 344555432 3332 4899884 565554
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.71 E-value=0.0059 Score=38.46 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=40.1
Q ss_pred ceEEeccCCChHHHHHHHHHHHc-----CCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeec
Q 042301 4 EVTLLGFWASPFVFRVKVALQQK-----GVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVN 66 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~-----gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~ 66 (227)
++++|+.++||+|.+++-+|.+. ++ +|..+.++ . .+++....... .+|+++.+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i-~~~~id~~--~-~~~l~~~~~i~-~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNI-SAEMIDAA--E-FPDLADEYGVM-SVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCce-EEEEEEcc--c-CHhHHHHcCCc-ccCEEEECCEEEE
Confidence 47899999999999999998875 56 55555443 2 23343333333 6999998886553
No 138
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.60 E-value=0.0035 Score=45.49 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=30.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
+++|+.+.||+|.+++-.|..+|| +|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi-~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDI-PFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC-CcEEeecc
Confidence 799999999999999999999999 99998864
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.58 E-value=0.003 Score=44.42 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDI 38 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~ 38 (227)
++||+.+.||+|.+++-.|..+|| +|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i-~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGV-DYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCC-ceEEecccC
Confidence 579999999999999999999999 999988753
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.50 E-value=0.004 Score=43.27 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=29.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
+++|+.+.||+|.+++-.|..+|| +|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i-~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGI-EYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCC-CcEEEeec
Confidence 479999999999999999999999 99998875
No 141
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.44 E-value=0.0052 Score=43.52 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=30.1
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
+++|+.+.|+.|.+++-.|..+|| +|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi-~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQI-PFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-ceEEEecC
Confidence 789999999999999999999999 99988874
No 142
>PTZ00062 glutaredoxin; Provisional
Probab=96.43 E-value=0.014 Score=45.56 Aligned_cols=69 Identities=19% Similarity=0.060 Sum_probs=51.6
Q ss_pred ceEEecc-----CCChHHHHHHHHHHHcCCCCceeEecCCCC-CChhhhhhCCCCCccceEEeCCeeechhHHHHHH
Q 042301 4 EVTLLGF-----WASPFVFRVKVALQQKGVVDYEYIEEDIFN-KSPRLLELNPVYKKVPVFIHGEKVVNESLIILEY 74 (227)
Q Consensus 4 ~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~-~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~y 74 (227)
++.||.- |.||||.++.-+|...|| +|+...++-.. ....+...+... ++|.+..+|..|.+...+.+.
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i-~y~~~DI~~d~~~~~~l~~~sg~~-TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGV-KYETYNIFEDPDLREELKVYSNWP-TYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCC-CEEEEEcCCCHHHHHHHHHHhCCC-CCCeEEECCEEEcChHHHHHH
Confidence 4667733 689999999999999999 99988776331 223344555555 899999999988888777764
No 143
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.26 E-value=0.022 Score=37.03 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=41.0
Q ss_pred eEEeccCCChHHHHH----HHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeee
Q 042301 5 VTLLGFWASPFVFRV----KVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVV 65 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v----~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i 65 (227)
+.+|. ++||.|..+ .-++++.|+ +++++.++- .++..+.+-. .+|+++.+|..+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~~---~~~a~~~~v~--~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGI-DAEFEKVTD---MNEILEAGVT--ATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCC-CeEEEEeCC---HHHHHHcCCC--cCCEEEECCEEE
Confidence 77876 999999998 668888999 999888872 2344455554 599999877554
No 144
>PRK10026 arsenate reductase; Provisional
Probab=96.13 E-value=0.0099 Score=43.61 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=31.7
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEec
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEE 36 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v 36 (227)
|+ ++++|+.+.|.-|++++-.|..+|+ +|+++.+
T Consensus 1 m~-~i~iY~~p~Cst~RKA~~wL~~~gi-~~~~~d~ 34 (141)
T PRK10026 1 MS-NITIYHNPACGTSRNTLEMIRNSGT-EPTIIHY 34 (141)
T ss_pred CC-EEEEEeCCCCHHHHHHHHHHHHCCC-CcEEEee
Confidence 76 8999999999999999999999999 9998875
No 145
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.04 E-value=0.016 Score=42.03 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=30.6
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
++++|+.+.|+.|.+++-.|..+|| +|+.+.+.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi-~~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQI-DYTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC-CeEEEEee
Confidence 3789999999999999999999999 99998765
No 146
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.03 E-value=0.018 Score=41.87 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=30.3
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
+++|+.+.|+.|++++-.|..+|| +|+++.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i-~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQL-SYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-CeEEEECC
Confidence 789999999999999999999999 99998875
No 147
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.01 E-value=0.01 Score=42.12 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=29.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
+++|+.+.||+|.+++-.|...|| +|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i-~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGI-EYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCC-ceEEEecC
Confidence 479999999999999999999999 99988764
No 148
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.99 E-value=0.04 Score=36.32 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=41.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCC-CCceeEecCCCCCChhhhhhCCCCCccceEEeCC
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGV-VDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGE 62 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi-~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~ 62 (227)
+++||+-+.|+.|..+.-.|+.... .+|+...+|+......+.+.+ . .||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~--~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG--Y-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC--T-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc--C-CCCEEEEcC
Confidence 3799999999999999999997654 167777888775444444444 3 799999876
No 149
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.52 E-value=0.072 Score=36.08 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=47.2
Q ss_pred eEEeccCCCh------HHHHHHHHHHHcCCCCceeEecCCCC-CChhhhhhCC----CCCccceEEeCCeeechhHHHHH
Q 042301 5 VTLLGFWASP------FVFRVKVALQQKGVVDYEYIEEDIFN-KSPRLLELNP----VYKKVPVFIHGEKVVNESLIILE 73 (227)
Q Consensus 5 ~~Ly~~~~sp------~~~~v~~~l~~~gi~~y~~~~v~~~~-~~~~~~~~np----~~~~vP~L~~~~~~i~eS~~I~~ 73 (227)
+++|....+. .|++|+.+|.-+|| +|+.+.++... ...++.+..+ .. .+|-+..++..|-+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I-~f~eiDI~~d~~~r~em~~~~~~~~g~~-tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKI-EFEEVDISMNEENRQWMRENVPNENGKP-LPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCC-ceEEEecCCCHHHHHHHHHhcCCCCCCC-CCCEEEECCEEeeCHHHHHH
Confidence 5677766553 37889999999999 99999988642 2233344432 34 78988888888877755544
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.51 E-value=0.024 Score=40.03 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=29.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
++||+.+.|+.|++++-.|..+|| +|+++.+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi-~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGH-EVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC-CcEEeehh
Confidence 789999999999999999999999 99988754
No 151
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.49 E-value=0.022 Score=39.62 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=29.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
+++|+.+.|+.|++++-.|..+|| +|+++.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i-~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGV-AYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCC-CeEEEecc
Confidence 579999999999999999999999 99988764
No 152
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.036 Score=39.37 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=30.3
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
++++|+.+.|.-|++++-.|+.+|| +|+++.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi-~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGI-EYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCC-CcEEEEee
Confidence 4999999999999999999999999 99988654
No 153
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.08 E-value=0.096 Score=34.01 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=39.0
Q ss_pred ceEEeccCCChHHHHHHHHHHH----cCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCe
Q 042301 4 EVTLLGFWASPFVFRVKVALQQ----KGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEK 63 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~----~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~ 63 (227)
++++|+.++||+|..+.-.+.. .+. .+....+|..+..+..... ... .+|+++.+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~-~v~-~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEY-GIM-AVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHc-CCc-cCCEEEECCE
Confidence 4789999999999988887754 455 5566667665444433343 333 6999998764
No 154
>PRK10853 putative reductase; Provisional
Probab=94.54 E-value=0.065 Score=38.10 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=29.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEec
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEE 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v 36 (227)
+++|+.+.|.-|++++-.|..+|+ +|+++.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i-~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGI-DYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCC-CcEEeeh
Confidence 799999999999999999999999 9998865
No 155
>PHA02125 thioredoxin-like protein
Probab=94.50 E-value=0.12 Score=33.34 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=36.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEe
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIH 60 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~ 60 (227)
+.+|+.++|+.|..+.-.|+ ++ .|+...+|.... .++.....-. .+|+++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~-~~~~~~vd~~~~-~~l~~~~~v~-~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NV-EYTYVDVDTDEG-VELTAKHHIR-SLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HH-hheEEeeeCCCC-HHHHHHcCCc-eeCeEEC
Confidence 78899999999999888876 46 777777775443 3444443333 6999984
No 156
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=93.91 E-value=0.11 Score=37.46 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=29.8
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEec
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEE 36 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v 36 (227)
.+++|+.+.|.-|++++-.|.++|| +|+++.+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi-~~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGH-DVEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCC-CcEEEec
Confidence 4899999999999999999999999 9998875
No 157
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.76 E-value=0.16 Score=30.13 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=35.9
Q ss_pred eEEeccCCChHHHHHHHHHH-----HcCCCCceeEecCCCCCChhhhhhCCCCCccceEEe
Q 042301 5 VTLLGFWASPFVFRVKVALQ-----QKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIH 60 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~-----~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~ 60 (227)
+++|+...|++|.+++..+. ..++ .+..+.++...........++.. .+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGV-KFEAVDVDEDPALEKELKRYGVG-GVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCc-EEEEEEcCCChHHhhHHHhCCCc-cccEEEE
Confidence 35788889999999999999 4566 55555544332222222356656 8999985
No 158
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=93.16 E-value=0.15 Score=35.87 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=28.7
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEec
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEE 36 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v 36 (227)
+++|+.+.|+-|++++-.|...|+ +|+++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i-~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGI-EPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCC-CeEEEec
Confidence 579999999999999999999999 9998865
No 159
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=92.97 E-value=0.16 Score=35.81 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=29.0
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
+++|+.+.|+-|++++-.|...|+ +|+++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i-~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGI-EPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCC-CeEEEecc
Confidence 579999999999999999999999 99987653
No 160
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=92.83 E-value=0.2 Score=33.68 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=39.0
Q ss_pred ceEEeccCCChHHHHHHHHHHHc-----CCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeec
Q 042301 4 EVTLLGFWASPFVFRVKVALQQK-----GVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVN 66 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~-----gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~ 66 (227)
.+.+|..++||+|..+.-++... +| .|..+.++ ...+...+.+=. .+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i-~~~~vd~~--~~~e~a~~~~V~--~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNI-EHEMIDGA--LFQDEVEERGIM--SVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCc-eEEEEEhH--hCHHHHHHcCCc--cCCEEEECCEEEE
Confidence 47888999999999888777664 55 55555543 334444555554 5999998775433
No 161
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.15 E-value=0.71 Score=29.80 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=35.8
Q ss_pred eEEeccCCChHHHHHHH----HHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeec
Q 042301 5 VTLLGFWASPFVFRVKV----ALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVN 66 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~----~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~ 66 (227)
++++ .+.||+|..+.- ++...|+ .++.+.+. ..++..+.+=+ .+|+++.||..++
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i-~~ei~~~~---~~~~~~~ygv~--~vPalvIng~~~~ 61 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGI-EVEIIDIE---DFEEIEKYGVM--SVPALVINGKVVF 61 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTE-EEEEEETT---THHHHHHTT-S--SSSEEEETTEEEE
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCC-eEEEEEcc---CHHHHHHcCCC--CCCEEEECCEEEE
Confidence 6774 566999986555 5566788 77666652 23455555553 6999998886543
No 162
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=88.91 E-value=1.1 Score=33.92 Aligned_cols=38 Identities=18% Similarity=-0.083 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhcccCC---ccccccCCC-cchHHHHHHHHHHHH
Q 042301 126 EFAEGLEKIEGEFKGKSG---LLFAEGESN-IGYLELAFGWILYWL 167 (227)
Q Consensus 126 ~~~~~l~~le~~L~~~~~---~fl~~~G~~-~t~aD~~l~~~l~~~ 167 (227)
.-.+.+..|++.|+. . .|+ +|+. +|-.||.+++.|.-+
T Consensus 112 ~a~~~l~~L~~~L~~--~~~~~~~--f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGE--WEEARYF--FGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhh--ccccccc--cCCCCCCHHHHHHHHHHHHH
Confidence 456778888999988 6 888 8887 999999999999755
No 163
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=2.1 Score=29.25 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=50.4
Q ss_pred ceEEe-----ccCCChHHHHHHHHHHHcC-CCCceeEecCCC-CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 4 EVTLL-----GFWASPFVFRVKVALQQKG-VVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 4 ~~~Ly-----~~~~sp~~~~v~~~l~~~g-i~~y~~~~v~~~-~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
++.|| .+|-|.|+.++-=+|.++| + +|..+.|--+ +....+...+-.. ++|=|-.+|..|-+|..|.+-..
T Consensus 16 ~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v-~~~~vnVL~d~eiR~~lk~~s~WP-T~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 16 PVVLFMKGTPEFPQCGFSAQAVQILSACGVV-DFAYVDVLQDPEIRQGLKEYSNWP-TFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred ceEEEecCCCCCCCCCccHHHHHHHHHcCCc-ceeEEeeccCHHHHhccHhhcCCC-CCceeeECCEEeccHHHHHHHHH
Confidence 45555 3678999999999999999 7 8887766432 1222233344445 89999999999999988777543
No 164
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=87.12 E-value=2.2 Score=29.80 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHHHcCC--CCceeEecCCCCCChhhhh-hCCCCCccceEEe-CC-------------eeechhHHHHH
Q 042301 11 WASPFVFRVKVALQQKGV--VDYEYIEEDIFNKSPRLLE-LNPVYKKVPVFIH-GE-------------KVVNESLIILE 73 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi--~~y~~~~v~~~~~~~~~~~-~np~~~~vP~L~~-~~-------------~~i~eS~~I~~ 73 (227)
.+||.|..+.=+|+..=- ...+++.|+.........+ +......+|+||- ++ ..|.++..|+.
T Consensus 22 f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~ 101 (112)
T PF11287_consen 22 FYCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILR 101 (112)
T ss_pred EECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHH
Confidence 357888887777765211 0345666776543344332 3332226999984 33 27999999999
Q ss_pred HHhhhcC
Q 042301 74 YIDETWE 80 (227)
Q Consensus 74 yL~~~~~ 80 (227)
||+++++
T Consensus 102 ~La~r~g 108 (112)
T PF11287_consen 102 YLAERHG 108 (112)
T ss_pred HHHHHcC
Confidence 9999986
No 165
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=86.33 E-value=1.8 Score=30.68 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=13.8
Q ss_pred ccceEEe--CCeeechhHHHHHHHhhhcC
Q 042301 54 KVPVFIH--GEKVVNESLIILEYIDETWE 80 (227)
Q Consensus 54 ~vP~L~~--~~~~i~eS~~I~~yL~~~~~ 80 (227)
.-|-|.+ +|+.++|+.||++|+..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 5688864 67999999999999998875
No 166
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=86.33 E-value=3.1 Score=28.50 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=37.3
Q ss_pred eEEeccCCCh------HHHHHHHHHHHcCCCCceeEecCCCCCC-hhhhhhC---------CCCCccceEEeCCeeechh
Q 042301 5 VTLLGFWASP------FVFRVKVALQQKGVVDYEYIEEDIFNKS-PRLLELN---------PVYKKVPVFIHGEKVVNES 68 (227)
Q Consensus 5 ~~Ly~~~~sp------~~~~v~~~l~~~gi~~y~~~~v~~~~~~-~~~~~~n---------p~~~~vP~L~~~~~~i~eS 68 (227)
+++|....|. ..+++..+|..++| +|+.+.+...... .+++... +.. ..|-+..|+..+.+-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI-~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~-lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKI-PFEEVDIAMDEEARQWMRENAGPEEKDPGNGKP-LPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT---EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCC-CcEEEeCcCCHHHHHHHHHhccccccCCCCCCC-CCCEEEeCCEEEeeH
Confidence 7888876654 36789999999999 9998888764222 2233322 221 336777777665554
Q ss_pred HHHH
Q 042301 69 LIIL 72 (227)
Q Consensus 69 ~~I~ 72 (227)
..+-
T Consensus 81 e~f~ 84 (99)
T PF04908_consen 81 EDFE 84 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 167
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=83.09 E-value=1.6 Score=30.38 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=22.5
Q ss_pred eccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 8 LGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 8 y~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
|+.+.|.-|++++-.|...|| +|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi-~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGI-EYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT---EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCC-CeEeehhh
Confidence 789999999999999999999 99987653
No 168
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=70.03 E-value=28 Score=22.82 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=35.7
Q ss_pred eEEeccCCChHHHHHHHHHHHc----CCCCceeEecCCCCCChhhhhhCCCCCccceEE--eCCee
Q 042301 5 VTLLGFWASPFVFRVKVALQQK----GVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEKV 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~----gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~~ 64 (227)
+..++.++|+.|++..-.|... +. .+....+|....+.-....+.. .+|+++ .+|..
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEELPEISEKFEIT--AVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccCHHHHHhcCCc--cccEEEEEECCEE
Confidence 4566788999999887766542 33 4566666654443333455654 599987 35543
No 169
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=68.66 E-value=2.7 Score=33.28 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhcccCCccccccCCCcchHHHHHHHHHHHHHHHhhhcCCcccCCCCCchHHHHHHHhhcchhhh
Q 042301 128 AEGLEKIEGEFKGKSGLLFAEGESNIGYLELAFGWILYWLPVWEEAGSFQVLDPQKFPVITEWSTKFVNHPLIK 201 (227)
Q Consensus 128 ~~~l~~le~~L~~~~~~fl~~~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~~~ 201 (227)
.+.+..++..|.+ ++|. .|.+++-+|+.+|..+..- + . ...+++..+|++.+.+.-.+.
T Consensus 10 ~~glk~l~~sLA~--ks~~--~g~~~s~edv~vf~al~~e-------p--~--s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAE--KSYI--EGYQLSKEDVVVFAALGVE-------P--Q--SARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhc--ccCC--CCCCcccccceeehhcccC-------c--c--hhhhhHHHHHHHHHHHHHHHH
Confidence 5678899999999 9999 9999999999988766321 1 1 256888999999888765554
No 170
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=68.38 E-value=26 Score=24.81 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=21.0
Q ss_pred eEEeccCCChHHHHHHHHHH----HcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQ----QKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~----~~gi~~y~~~~v~ 37 (227)
+.-++.++||+|+.+.=.|. ..++ ++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~-~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKA-PIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCC-cEEEEECC
Confidence 45578899999999555444 3446 55555554
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=68.00 E-value=13 Score=33.71 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=36.9
Q ss_pred ceEEeccCCChHHHHHHH----HHHHc-CCCCceeEecCCCCCChhhh-hhCCCCCccceEEeCCee
Q 042301 4 EVTLLGFWASPFVFRVKV----ALQQK-GVVDYEYIEEDIFNKSPRLL-ELNPVYKKVPVFIHGEKV 64 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~----~l~~~-gi~~y~~~~v~~~~~~~~~~-~~np~~~~vP~L~~~~~~ 64 (227)
.+++|..+.||+|-.+.- ++.+. +| ..+.+.+... +++. +.+=+ .||.++.||..
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i-~~~~i~~~~~---~~~~~~~~v~--~vP~~~i~~~~ 539 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNV-EAEMIDVSHF---PDLKDEYGIM--SVPAIVVDDQQ 539 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCc-eEEEEECccc---HHHHHhCCce--ecCEEEECCEE
Confidence 377888888988876544 44555 78 7776666543 4444 55654 59999987754
No 172
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=67.24 E-value=28 Score=23.13 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=32.9
Q ss_pred eEEeccCCChHHHHHHHHHHH----cCCCCceeEecCCCCCChhhh-hhCCCCCccceEE--eCCee
Q 042301 5 VTLLGFWASPFVFRVKVALQQ----KGVVDYEYIEEDIFNKSPRLL-ELNPVYKKVPVFI--HGEKV 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~gi~~y~~~~v~~~~~~~~~~-~~np~~~~vP~L~--~~~~~ 64 (227)
+.+|+.++|+.|....-.+.. .+- .+....+|.... +++. ..+- . .+|+++ .+|..
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~-~~l~~~~~v-~-~vPt~~i~~~g~~ 79 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED-QEIAEAAGI-M-GTPTVQFFKDKEL 79 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC-HHHHHHCCC-e-eccEEEEEECCeE
Confidence 566778899999988766654 221 234445554433 3443 3344 3 699887 35543
No 173
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=66.01 E-value=24 Score=27.64 Aligned_cols=55 Identities=5% Similarity=-0.034 Sum_probs=33.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCC--CCceeEecCCCCCChhhhhhCCCCCccceEEeC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGV--VDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHG 61 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi--~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~ 61 (227)
+++|+.++||+|..+.-++...-- +..+...+|.....+.....+-. .+|+++.+
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~--~vPtl~i~ 193 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVM--SVPKIVIN 193 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCc--cCCEEEEe
Confidence 567889999999988877765322 01233345554433333334443 59999853
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=64.41 E-value=11 Score=33.89 Aligned_cols=73 Identities=15% Similarity=-0.032 Sum_probs=42.2
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCC-C-CceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechh----HHHHHHHhh
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGV-V-DYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNES----LIILEYIDE 77 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi-~-~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS----~~I~~yL~~ 77 (227)
.+++|..+.||||-.+.-++...-+ . ..+...++....++...+.+- . .||.++.++..+.+- ..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v-~-~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNI-M-AVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCC-c-ccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 3789999999998887766655444 0 123333443333333334444 3 699999877554432 235555554
Q ss_pred h
Q 042301 78 T 78 (227)
Q Consensus 78 ~ 78 (227)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 175
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=64.16 E-value=33 Score=21.55 Aligned_cols=54 Identities=20% Similarity=0.181 Sum_probs=33.2
Q ss_pred eEEeccCCChHHHHHHHHHHH-----cCCCCceeEecCCCCCChhhhhhCCCCCccceEEe--CCe
Q 042301 5 VTLLGFWASPFVFRVKVALQQ-----KGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIH--GEK 63 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~-----~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~--~~~ 63 (227)
+..++.++|+.|....-.+.. .++ .+- .++... ...+....... .+|+++. +|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~-~~~--~i~~~~-~~~~~~~~~v~-~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKV-KFV--KVDVDE-NPELAEEYGVR-SIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCc-eEE--EEECCC-ChhHHHhcCcc-cccEEEEEECCE
Confidence 567788899999998888877 555 444 333332 23333333334 6999773 554
No 176
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=63.38 E-value=24 Score=24.51 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=35.5
Q ss_pred eEEeccCCChHHHHHHHHHHHcCC--CCceeEecCCCCCChhhhhhCCCCCccceEE--eCCeeec
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGV--VDYEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEKVVN 66 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi--~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~~i~ 66 (227)
+..++.++|+.|+.+.-.+...-- +..++..+|... .++..+...-. .+|+++ .+|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-~~~l~~~~~v~-~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-APFLVEKLNIK-VLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-CHHHHHHCCCc-cCCEEEEEECCEEEE
Confidence 456677899999987766655221 022455566543 33444433334 799998 3776543
No 177
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=62.97 E-value=12 Score=33.66 Aligned_cols=61 Identities=13% Similarity=-0.076 Sum_probs=38.4
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCC---ceeEecCCCCCChhhhhhCCCCCccceEEeCCeeech
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVD---YEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNE 67 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~---y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~e 67 (227)
.+++|..+.||||-.+.-++...-+ . .+...+|-...++...+.+-+ .||.++.++..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~-~~p~i~~~~id~~~~~~~~~~~~v~--~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMAL-LNPNISHTMIDGALFQDEVEALGIQ--GVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHH-hCCCceEEEEEchhCHHHHHhcCCc--ccCEEEECCcEEEe
Confidence 3789999999999887777666544 2 233334433444444445553 69999987755444
No 178
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.84 E-value=23 Score=28.11 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=48.0
Q ss_pred cCCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHh
Q 042301 10 FWASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYID 76 (227)
Q Consensus 10 ~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~ 76 (227)
.|-|++++.+--+|...|+ +|....|--+ .........+-.. +.|=|-.+|..+.+...|.+-+.
T Consensus 151 ~P~CGFS~~~v~iL~~~nV-~~~~fdIL~DeelRqglK~fSdWP-TfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNV-NYTIFDVLTDEELRQGLKEFSDWP-TFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred cccccccHHHHHHHHHcCC-CeeEEeccCCHHHHHHhhhhcCCC-CccceeECCEeccCcHHHHHHhh
Confidence 5789999999999999999 9988877533 1122223445555 89999999988888887766443
No 179
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=59.43 E-value=55 Score=22.44 Aligned_cols=55 Identities=9% Similarity=0.036 Sum_probs=29.8
Q ss_pred eEEeccCCChHHHHHHHHH-----HHcCCCCceeEecCCCCCChhhh-hhCCCCCccceEE--eCCe
Q 042301 5 VTLLGFWASPFVFRVKVAL-----QQKGVVDYEYIEEDIFNKSPRLL-ELNPVYKKVPVFI--HGEK 63 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l-----~~~gi~~y~~~~v~~~~~~~~~~-~~np~~~~vP~L~--~~~~ 63 (227)
+..++.++|+.|+...-.+ .+.|. ......++.... +.+. ..+- . .+|+++ .+|.
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~-~~l~~~~~V-~-~~Pt~~i~~~g~ 90 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHE-RRLARKLGA-H-SVPAIVGIINGQ 90 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEecccc-HHHHHHcCC-c-cCCEEEEEECCE
Confidence 4556788999997654333 22222 334445554332 3333 3444 3 699987 3553
No 180
>PTZ00051 thioredoxin; Provisional
Probab=54.29 E-value=59 Score=21.27 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=29.5
Q ss_pred eEEeccCCChHHHHHHHHHHHcCC--CCceeEecCCCCCChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGV--VDYEYIEEDIFNKSPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi--~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~ 59 (227)
+..++.++|+.|+...-.+....- ..+.+..++......-....+- . .+|+++
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v-~-~~Pt~~ 76 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI-T-SMPTFK 76 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC-c-eeeEEE
Confidence 456778899999887655544211 0234445554332222233444 3 699987
No 181
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=53.87 E-value=28 Score=24.15 Aligned_cols=53 Identities=15% Similarity=0.023 Sum_probs=31.5
Q ss_pred eEEe-ccCCChHHHHHHHHHHHcCCCCc---eeEecCCCCCChhhhhhCCCCCccceEEe
Q 042301 5 VTLL-GFWASPFVFRVKVALQQKGVVDY---EYIEEDIFNKSPRLLELNPVYKKVPVFIH 60 (227)
Q Consensus 5 ~~Ly-~~~~sp~~~~v~~~l~~~gi~~y---~~~~v~~~~~~~~~~~~np~~~~vP~L~~ 60 (227)
++++ +.++||+|..++-++....- .+ +...++... .+++...-... .+|+++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~-~~~~i~~~~vd~d~-~~~l~~~~~v~-~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSE-LSDKLKLEIYDFDE-DKEKAEKYGVE-RVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHH-hcCceEEEEEeCCc-CHHHHHHcCCC-cCCEEEE
Confidence 3444 56799999988777765443 22 344455433 34554443334 7999984
No 182
>PHA03075 glutaredoxin-like protein; Provisional
Probab=52.22 E-value=28 Score=24.60 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=45.7
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhh
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDE 77 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~ 77 (227)
|.+.+.|+|-|.|+-|.-+.-+|.+..= .|+...|++. .|... .| ++=+|-.++.. .=-..+.+||..
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~led-eY~ilrVNIl----SfFsK--~g-~v~~lg~d~~y-~lInn~~~~lgn 68 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELED-EYDILRVNIL----SFFSK--DG-QVKVLGMDKGY-TLINNFFKHLGN 68 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhc-cccEEEEEee----eeecc--CC-ceEEEecccce-ehHHHHHHhhcc
Confidence 6677999999999999999999988887 9999888763 12111 14 66666643321 112345566654
No 183
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=50.15 E-value=70 Score=20.87 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=40.4
Q ss_pred eEEeccCCChHHHHHHHHHHH----cCCCCceeEecCCCCCChhhhhhCCCCCccceEE--eCCeee------chhHHHH
Q 042301 5 VTLLGFWASPFVFRVKVALQQ----KGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEKVV------NESLIIL 72 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~~i------~eS~~I~ 72 (227)
+..++.++|+.|+...=.+.. .+- +..+..+|.... ..+...--.. .+|+++ .+|..+ .+...|.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~~~~~v~-~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELCKKYGVK-SVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHHHHTTCS-SSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhhhccCCC-CCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 566788899999988755433 332 345555665433 4444333334 699998 355332 2444566
Q ss_pred HHHhh
Q 042301 73 EYIDE 77 (227)
Q Consensus 73 ~yL~~ 77 (227)
++|.+
T Consensus 98 ~~i~~ 102 (103)
T PF00085_consen 98 EFIEK 102 (103)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66543
No 184
>PRK10996 thioredoxin 2; Provisional
Probab=48.40 E-value=1e+02 Score=22.19 Aligned_cols=57 Identities=5% Similarity=-0.019 Sum_probs=33.5
Q ss_pred eEEeccCCChHHHHHHHHHHH----cCCCCceeEecCCCCCChhhhhhCCCCCccceEE--eCCee
Q 042301 5 VTLLGFWASPFVFRVKVALQQ----KGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEKV 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~~ 64 (227)
+..++.++|+.|+...-.+.. .+- .+.+..+|......-....+-. .+|+++ .+|..
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~--~~Ptlii~~~G~~ 118 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIR--SIPTIMIFKNGQV 118 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCC--ccCEEEEEECCEE
Confidence 556778899999876544433 233 3455566665443333445553 699987 35543
No 185
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.38 E-value=30 Score=28.28 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCCCceeEecCCC-CCChhhhhhC----CCCCccceEEeCCeeechhHHHHHH
Q 042301 16 VFRVKVALQQKGVVDYEYIEEDIF-NKSPRLLELN----PVYKKVPVFIHGEKVVNESLIILEY 74 (227)
Q Consensus 16 ~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~~~~n----p~~~~vP~L~~~~~~i~eS~~I~~y 74 (227)
|..||.+|+-.+| .|+.+.|++. ...+++..+- -.- .+|.+..+|..|-...-|.+.
T Consensus 150 C~~VR~ilesf~V-~v~ERDVSMd~~fr~EL~~~lg~~~~~~-~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 150 CNAVRAILESFRV-KVDERDVSMDSEFREELQELLGEDEKAV-SLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHhCce-EEEEecccccHHHHHHHHHHHhcccccC-ccCeEEEccEEeccHHHhhhh
Confidence 8899999999999 9999999986 2344444321 123 789777888888777766653
No 186
>PRK09381 trxA thioredoxin; Provisional
Probab=46.34 E-value=89 Score=20.98 Aligned_cols=57 Identities=7% Similarity=-0.073 Sum_probs=32.7
Q ss_pred eEEeccCCChHHHHHHHHHHH----cCCCCceeEecCCCCCChhhhhhCCCCCccceEE--eCCee
Q 042301 5 VTLLGFWASPFVFRVKVALQQ----KGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEKV 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~~ 64 (227)
+..++.++||.|....-.++. .+- .+....++......-....+.. .+|+++ .+|..
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~G~~ 87 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIR--GIPTLLLFKNGEV 87 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCC--cCCEEEEEeCCeE
Confidence 445667889999877644432 222 3455556654433333445553 699987 35543
No 187
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=46.33 E-value=81 Score=20.52 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=32.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcCC---CCceeEecCCCCCChhhh-hhCCCCCccceEE--eCCee
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGV---VDYEYIEEDIFNKSPRLL-ELNPVYKKVPVFI--HGEKV 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi---~~y~~~~v~~~~~~~~~~-~~np~~~~vP~L~--~~~~~ 64 (227)
+..++.++|+.|+...-.+...-- ..+....+|.... +++. +.+-. .+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~~~i~--~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-PQIAQQFGVQ--ALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-HHHHHHcCCC--CCCEEEEEeCCEE
Confidence 455667889999887666654332 0234445555443 3443 44543 599998 45543
No 188
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=45.23 E-value=73 Score=24.83 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=31.0
Q ss_pred eEEecc---CCChHHHHHHHHHHHcC-----CCCceeEecCCCCCChhhhhhCCCCCccceEEe
Q 042301 5 VTLLGF---WASPFVFRVKVALQQKG-----VVDYEYIEEDIFNKSPRLLELNPVYKKVPVFIH 60 (227)
Q Consensus 5 ~~Ly~~---~~sp~~~~v~~~l~~~g-----i~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~~ 60 (227)
+.+|.. ++||.|..+.=.+.... + .+..+.+|... .++.....--- .+|+++.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~-~i~~v~vd~~~-~~~l~~~~~V~-~~Pt~~~ 83 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKL-KLEIYDFDTPE-DKEEAEKYGVE-RVPTTII 83 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCc-eEEEEecCCcc-cHHHHHHcCCC-ccCEEEE
Confidence 566767 88999988777665543 3 33444555333 33333332233 6999983
No 189
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=44.75 E-value=67 Score=21.41 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=29.0
Q ss_pred eEEeccCCChHHHHHHHHH-------HHcCCCCceeEecCCCCC---ChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVAL-------QQKGVVDYEYIEEDIFNK---SPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l-------~~~gi~~y~~~~v~~~~~---~~~~~~~np~~~~vP~L~ 59 (227)
+..|+.++|++|....-.+ ...+= .+....++.... ..++....... .+|+++
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~-~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVF-GPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCC-CCCEEE
Confidence 5667889999998876433 12221 234445554321 23344333334 699887
No 190
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=41.02 E-value=80 Score=21.93 Aligned_cols=16 Identities=19% Similarity=0.330 Sum_probs=12.8
Q ss_pred eEEeccCCChHHHHHH
Q 042301 5 VTLLGFWASPFVFRVK 20 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~ 20 (227)
+..++.++|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 5667788999998865
No 191
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=34.97 E-value=1.3e+02 Score=19.71 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=29.7
Q ss_pred eEEeccCCChHHHHHHHHHHHc-----CCCCceeEecCCCCCChhhh-hhCCCCCccceEEe
Q 042301 5 VTLLGFWASPFVFRVKVALQQK-----GVVDYEYIEEDIFNKSPRLL-ELNPVYKKVPVFIH 60 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~-----gi~~y~~~~v~~~~~~~~~~-~~np~~~~vP~L~~ 60 (227)
+..++.++|+.|+...=.+... +. .+.+..+|.... +.+. ..+- . .+|+++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~-~~~~~~~~i-~-~~Pt~~~ 77 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQE-PGLSGRFFV-T-ALPTIYH 77 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCC-HhHHHHcCC-c-ccCEEEE
Confidence 4567788999998765444332 33 344455554432 3333 3444 3 6999873
No 192
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=31.78 E-value=1.8e+02 Score=20.21 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=28.6
Q ss_pred eEEeccCCChHHHHHHHHHHH------cCCCCceeEecCCCCCChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQ------KGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~------~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~ 59 (227)
+.-++.++|+.|....-.+.. .+. .|-.+.++-.. .+.-...+..|+-+|+++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~-~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~ 81 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSH-NFVMVNLEDDE-EPKDEEFSPDGGYIPRIL 81 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcC-cEEEEEecCCC-CchhhhcccCCCccceEE
Confidence 455677899999887555544 223 34333343221 122234455442499987
No 193
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=31.24 E-value=1.6e+02 Score=19.55 Aligned_cols=52 Identities=10% Similarity=-0.104 Sum_probs=28.1
Q ss_pred eEEeccCCChHHHHHHHHHHH----c---CCCCceeEecCCCCCChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQ----K---GVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~---gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~ 59 (227)
+..|+.++||.|++..-.+.. . |. .+....++......-....+.. .+|+++
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~I~--~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGS-PVRVGKLDATAYSSIASEFGVR--GYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCC-cEEEEEEECccCHhHHhhcCCc--cccEEE
Confidence 455677889999865533322 2 33 3444444443322222344553 599987
No 194
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=31.04 E-value=1e+02 Score=20.40 Aligned_cols=52 Identities=2% Similarity=-0.170 Sum_probs=29.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCC----ceeEecCCCCCChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVD----YEYIEEDIFNKSPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~----y~~~~v~~~~~~~~~~~~np~~~~vP~L~ 59 (227)
+..++.++|+.|+...-.+....- . +.+..++......-..+.+- . .+|+++
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~-~~~~~~~~~~vd~~~~~~~~~~~~v-~-~~Pt~~ 77 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAK-EMDGVIRIGAVNCGDDRMLCRSQGV-N-SYPSLY 77 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHH-HhcCceEEEEEeCCccHHHHHHcCC-C-ccCEEE
Confidence 456778899999876655544333 2 23445555433222233444 3 699986
No 195
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=31.00 E-value=1.9e+02 Score=20.29 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh--c---chHHHHHHHHHHHHHHHHHHhhhcccCC
Q 042301 69 LIILEYIDETWEQNPLLPRDPYQRAMARFWAKYSEELMAKAFMALV--L---KGEAKEKNAKEFAEGLEKIEGEFKGKSG 143 (227)
Q Consensus 69 ~~I~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~l~~le~~L~~~~~ 143 (227)
.++++||.+..+ ||-.............+.+++.+...+...+ . ..+.+....++....+.-||+.|++
T Consensus 9 ~~LI~yLte~L~---lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~--- 82 (113)
T PF12290_consen 9 DALIEYLTENLS---LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLAS--- 82 (113)
T ss_pred HHHHHHHHHhHH---HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 568899987543 3331111122233455555665555555552 1 3466788888999999999999987
Q ss_pred ccccccCCCcchHHHHHHH
Q 042301 144 LLFAEGESNIGYLELAFGW 162 (227)
Q Consensus 144 ~fl~~~G~~~t~aD~~l~~ 162 (227)
+ .+..+|-.-+.+..
T Consensus 83 --V--~~~~aT~eQ~~Fi~ 97 (113)
T PF12290_consen 83 --V--WNQKATNEQIAFIE 97 (113)
T ss_pred --H--HcCCCCHHHHHHHH
Confidence 3 45667776665443
No 196
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=30.81 E-value=2e+02 Score=20.42 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=34.7
Q ss_pred eEEeccCCChHHHHHHH-------HHHHcCCCCceeEecCCCCCChh---hhh-----hCCCCCccceEE--e-CCeeec
Q 042301 5 VTLLGFWASPFVFRVKV-------ALQQKGVVDYEYIEEDIFNKSPR---LLE-----LNPVYKKVPVFI--H-GEKVVN 66 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~-------~l~~~gi~~y~~~~v~~~~~~~~---~~~-----~np~~~~vP~L~--~-~~~~i~ 66 (227)
+..++..+|++|++..- +.....- .|..+.+|....++. +.. .+.. -+|+++ + +|..|.
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~--G~Pt~vfl~~~G~~~~ 95 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQG--GWPLNVFLTPDLKPFF 95 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCC--CCCEEEEECCCCCEEe
Confidence 34467788999987632 2222344 677777776543222 111 2333 499988 2 567776
Q ss_pred hh
Q 042301 67 ES 68 (227)
Q Consensus 67 eS 68 (227)
.+
T Consensus 96 ~~ 97 (124)
T cd02955 96 GG 97 (124)
T ss_pred ee
Confidence 65
No 197
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=30.51 E-value=1.7e+02 Score=19.83 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=40.2
Q ss_pred EeccCCChHHHHHHHHHHHcCCCCceeEecCCC-CCChhh---hhhC---CCCCccceEEeCCe-eechhHHHHHHHhhh
Q 042301 7 LLGFWASPFVFRVKVALQQKGVVDYEYIEEDIF-NKSPRL---LELN---PVYKKVPVFIHGEK-VVNESLIILEYIDET 78 (227)
Q Consensus 7 Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~-~~~~~~---~~~n---p~~~~vP~L~~~~~-~i~eS~~I~~yL~~~ 78 (227)
|++...||+|.+..-.+..... .-.+..++.. ....+. ..++ ... .+-+ +.+|. ...++.|+..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADS-RLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcC-eeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 4567789999888777777665 4444445542 111221 1222 222 3333 55665 899999998876554
No 198
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=30.06 E-value=1.8e+02 Score=19.64 Aligned_cols=53 Identities=11% Similarity=0.143 Sum_probs=30.4
Q ss_pred eEEeccCCChHHHHHHHHHHH-----cCCCCceeEecCCCCCChhhh-hhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQ-----KGVVDYEYIEEDIFNKSPRLL-ELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~-----~gi~~y~~~~v~~~~~~~~~~-~~np~~~~vP~L~ 59 (227)
+..++.++||.|+...-.+.. .+. .+....++.......+. ...... .+|+++
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~~~~~~~~~v~-~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQREFAKEELQLK-SFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccchhhHHhhcCCC-cCCEEE
Confidence 567788999999877544433 333 34455555443223332 223334 699887
No 199
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=30.03 E-value=1.5e+02 Score=18.86 Aligned_cols=36 Identities=19% Similarity=0.472 Sum_probs=23.2
Q ss_pred hhHHHHHHHhhhcCC--CCCCCCCHHHHHHHHHHHHHHHH
Q 042301 67 ESLIILEYIDETWEQ--NPLLPRDPYQRAMARFWAKYSEE 104 (227)
Q Consensus 67 eS~~I~~yL~~~~~~--~~l~p~~~~~~a~~~~~~~~~~~ 104 (227)
|..-|+.++...||+ ..+-+.+ .+..++.|.....+
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~--~k~~v~~W~~~L~d 42 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTD--SKETVDLWYDMLKD 42 (71)
T ss_dssp HHHHHHHHHHHHST---TT---ST--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcchhccchhh--HHHHHHHHHHHHHh
Confidence 667789999999983 3444544 35677788777655
No 200
>PTZ00102 disulphide isomerase; Provisional
Probab=29.86 E-value=3.2e+02 Score=23.93 Aligned_cols=73 Identities=11% Similarity=-0.027 Sum_probs=41.9
Q ss_pred eEEeccCCChHHHHHHHH-------HHHcCCCCceeEecCCCCCChhhhhhCCCCCccceEE--eCCee-----echhHH
Q 042301 5 VTLLGFWASPFVFRVKVA-------LQQKGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEKV-----VNESLI 70 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~-------l~~~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~~-----i~eS~~ 70 (227)
+..++.++|+.|++..=. +...+- ++.+..+|......-..+.+-. .+|++. .+|.. -.....
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~-~i~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~g~~~~y~g~~~~~~ 129 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKS-EIVLASVDATEEMELAQEFGVR--GYPTIKFFNKGNPVNYSGGRTADG 129 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCC-cEEEEEEECCCCHHHHHhcCCC--cccEEEEEECCceEEecCCCCHHH
Confidence 567788999999876421 122233 4555556544333323344543 599886 34432 134567
Q ss_pred HHHHHhhhcC
Q 042301 71 ILEYIDETWE 80 (227)
Q Consensus 71 I~~yL~~~~~ 80 (227)
|.+|+.+...
T Consensus 130 l~~~l~~~~~ 139 (477)
T PTZ00102 130 IVSWIKKLTG 139 (477)
T ss_pred HHHHHHHhhC
Confidence 8899888753
No 201
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=29.45 E-value=1.5e+02 Score=20.21 Aligned_cols=59 Identities=8% Similarity=0.115 Sum_probs=31.9
Q ss_pred eEEeccCCChHHHHHHHHHHHcCC--CCceeEecCCCCCChhhhhhCCCCCccceEE--eCCeeec
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGV--VDYEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEKVVN 66 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi--~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~~i~ 66 (227)
+..++.++|+.|..+.-.++..-- +...+..+|.... .+....-.. .+|+++ .+|..+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i~-~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDIK-VLPTLLVYKNGELID 90 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCCC-cCCEEEEEECCEEEE
Confidence 345677899988877655544222 0123345554332 333322223 699988 3665543
No 202
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=28.82 E-value=2.4e+02 Score=20.81 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=33.1
Q ss_pred eEEeccCCChHHHHHHHHHHHc-----CCCCceeEecCCCCCChhhhh-hCCCC----CccceEE--eCCeeec
Q 042301 5 VTLLGFWASPFVFRVKVALQQK-----GVVDYEYIEEDIFNKSPRLLE-LNPVY----KKVPVFI--HGEKVVN 66 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~-----gi~~y~~~~v~~~~~~~~~~~-~np~~----~~vP~L~--~~~~~i~ 66 (227)
+..|+.++||.|+...-.+... +- .+++..+|.... ++..+ .+-.+ +++|+++ .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 5567788999998776544332 22 345556665433 33332 23211 1389987 4665543
No 203
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=28.75 E-value=1.6e+02 Score=18.85 Aligned_cols=52 Identities=4% Similarity=-0.040 Sum_probs=29.7
Q ss_pred eEEeccCCChHHHHHHHHHHHc----CCCCceeEecCCCCCChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQK----GVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~----gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~ 59 (227)
+..++.++|+.|....-.+... +- ...+..+|......-....+- . .+|+++
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v-~-~~P~~~ 73 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGI-R-SIPTLL 73 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCC-C-cCCEEE
Confidence 4556678899998776555432 22 345555655433332334444 3 699987
No 204
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=27.19 E-value=70 Score=19.60 Aligned_cols=32 Identities=16% Similarity=0.017 Sum_probs=19.5
Q ss_pred EEeccCCChHHHHHHHHHHHcCCCCceeEecCC
Q 042301 6 TLLGFWASPFVFRVKVALQQKGVVDYEYIEEDI 38 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~ 38 (227)
+||......-+..++-+|+..|| ++.......
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI-~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGI-PAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT---EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCC-cEEEECCcc
Confidence 67777666669999999999999 888766543
No 205
>PF13728 TraF: F plasmid transfer operon protein
Probab=26.88 E-value=1.9e+02 Score=22.66 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=33.0
Q ss_pred eEEeccCCChHHHH----HHHHHHHcCCCCceeEecCCC---------CCChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFR----VKVALQQKGVVDYEYIEEDIF---------NKSPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~----v~~~l~~~gi~~y~~~~v~~~---------~~~~~~~~~np~~~~vP~L~ 59 (227)
+.+++...||+|+. ++.+....|+ ....+.+|-. ........++. . .+|+|.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~-~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-~-~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGF-SVIPVSLDGRPIPSFPNPRPDPGQAKRLGV-K-VTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCC-EEEEEecCCCCCcCCCCCCCCHHHHHHcCC-C-cCCEEE
Confidence 55667788999976 6677777898 6665555521 11223334555 3 789986
No 206
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=26.55 E-value=85 Score=23.30 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=23.7
Q ss_pred CChHHHHHHHHHHHcCCCCceeEecCCCCCChhhh
Q 042301 12 ASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLL 46 (227)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~ 46 (227)
.-+.+++++-.|++.|| +|+......-..++++.
T Consensus 12 D~~~~~~a~~~L~~~gi-~~~~~V~saHR~p~~l~ 45 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGI-PYEVRVASAHRTPERLL 45 (150)
T ss_dssp GHHHHHHHHHHHHHTT--EEEEEE--TTTSHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CEEEEEEeccCCHHHHH
Confidence 45789999999999999 99988776544434433
No 207
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=26.42 E-value=1.9e+02 Score=18.82 Aligned_cols=52 Identities=13% Similarity=0.005 Sum_probs=27.4
Q ss_pred eEEeccCCChHHHHHHHHH----HHcC--CCCceeEecCCCC-CChhhh-hhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVAL----QQKG--VVDYEYIEEDIFN-KSPRLL-ELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l----~~~g--i~~y~~~~v~~~~-~~~~~~-~~np~~~~vP~L~ 59 (227)
+.+++.++|+.|+...=.+ .... - .+....++... ..+.+. ..+- . .+|+++
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~~~i-~-~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEHDALKEEYNV-K-GFPTFK 80 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCccHHHHHhCCC-c-cccEEE
Confidence 5677788999998764222 2222 2 23333344332 133443 3344 3 599987
No 208
>PHA02278 thioredoxin-like protein
Probab=25.98 E-value=2.2e+02 Score=19.35 Aligned_cols=57 Identities=7% Similarity=0.083 Sum_probs=30.1
Q ss_pred eEEeccCCChHHHHHHHHHHHc----CCCCceeEecCCCCC---Chhhh-hhCCCCCccceEEe--CCee
Q 042301 5 VTLLGFWASPFVFRVKVALQQK----GVVDYEYIEEDIFNK---SPRLL-ELNPVYKKVPVFIH--GEKV 64 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~----gi~~y~~~~v~~~~~---~~~~~-~~np~~~~vP~L~~--~~~~ 64 (227)
+.-++.++|+.|+...=.+... +. ...+..++.... .+++. ..+-. .+|+++. +|..
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~I~--~iPT~i~fk~G~~ 84 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFDIM--STPVLIGYKDGQL 84 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCCCc--cccEEEEEECCEE
Confidence 3445678899988766444332 22 223344444322 23433 44554 5999983 6644
No 209
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=25.45 E-value=2e+02 Score=18.68 Aligned_cols=52 Identities=8% Similarity=-0.068 Sum_probs=29.0
Q ss_pred eEEeccCCChHHHHHHHHH-----HHcC--CCCceeEecCCCCCChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVAL-----QQKG--VVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l-----~~~g--i~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~ 59 (227)
+..++.++|+.|+...=.+ ...+ - .+....+|......-....+. . .+|+++
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v-~-~~Pt~~ 78 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENP-SVKIAKVDCTQHRELCSEFQV-R-GYPTLL 78 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCC-cEEEEEEECCCChhhHhhcCC-C-cCCEEE
Confidence 4566788899998754333 2233 2 345555555433333334454 3 699877
No 210
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=25.21 E-value=62 Score=21.80 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=13.5
Q ss_pred eEEeccCCChHHHHHHHHHH
Q 042301 5 VTLLGFWASPFVFRVKVALQ 24 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~ 24 (227)
+.+++.++||+|.+..-.+.
T Consensus 9 v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 56677899999998755554
No 211
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=24.21 E-value=2.1e+02 Score=18.58 Aligned_cols=52 Identities=4% Similarity=-0.235 Sum_probs=28.7
Q ss_pred eEEeccCCChHHHHHHHHHHH----cCCCCceeEecCCCCCChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQ----KGVVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~gi~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~ 59 (227)
+.+++.++|+.|+...=.+.. ..- .+....++......-....+.. .+|+++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~--~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVR--GFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCC--ccCEEE
Confidence 456677889998876433322 211 2344445544333333455664 599886
No 212
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=24.08 E-value=2.6e+02 Score=19.59 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=31.3
Q ss_pred EEeccCCChHHHHHHHHHHHcCCCC----ceeEecCCCCCChhhhhhCCCCCccceEE--eCCee
Q 042301 6 TLLGFWASPFVFRVKVALQQKGVVD----YEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEKV 64 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~----y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~~ 64 (227)
.-++.++|+.|+.+.=.+...-- . .++..||.... +++....--. .+|+++ .+|..
T Consensus 19 V~F~A~WCgpCk~m~P~le~la~-~~~~~v~f~kVDvD~~-~~la~~~~V~-~iPTf~~fk~G~~ 80 (114)
T cd02954 19 IRFGRDWDPVCMQMDEVLAKIAE-DVSNFAVIYLVDIDEV-PDFNKMYELY-DPPTVMFFFRNKH 80 (114)
T ss_pred EEEECCCChhHHHHHHHHHHHHH-HccCceEEEEEECCCC-HHHHHHcCCC-CCCEEEEEECCEE
Confidence 33677899999877655544322 2 23445565443 4444333323 699987 36644
No 213
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=23.96 E-value=2.2e+02 Score=18.71 Aligned_cols=52 Identities=10% Similarity=-0.154 Sum_probs=28.8
Q ss_pred eEEeccCCChHHHHHHHHHHHcCC---CCceeEecCCCCCChhhh-hhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGV---VDYEYIEEDIFNKSPRLL-ELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi---~~y~~~~v~~~~~~~~~~-~~np~~~~vP~L~ 59 (227)
+..|+.++|+.|++..=.+...-- ....+..+|.... +++. ..+- . .+|+++
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i-~-~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ESLCQQANI-R-AYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHcCC-C-cccEEE
Confidence 456778899999876544433222 0234445554432 3443 3344 3 699987
No 214
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.89 E-value=1e+02 Score=19.93 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHcCCCCceeEecC
Q 042301 12 ASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
.-+|++|+.-.|+..|| +|+...-.
T Consensus 14 evGF~rk~L~I~E~~~i-s~Eh~PSG 38 (76)
T cd04911 14 EVGFGRKLLSILEDNGI-SYEHMPSG 38 (76)
T ss_pred hhcHHHHHHHHHHHcCC-CEeeecCC
Confidence 34789999999999999 99987644
No 215
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=23.62 E-value=1.3e+02 Score=22.04 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=43.4
Q ss_pred ceEEeccCCChHHHHHHHHHHHcCCCCceeEecCCCCCChhhhhhCC-CCCccc-------eEEeCCeeech---hHHHH
Q 042301 4 EVTLLGFWASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRLLELNP-VYKKVP-------VFIHGEKVVNE---SLIIL 72 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~~~~np-~~~~vP-------~L~~~~~~i~e---S~~I~ 72 (227)
+++.|..|.|.+|..-.=.|+.+|. ..+.+..+. +.++-- +| || +.+.+|..|-+ ..+|.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf-~Vk~~~~~d------~~alK~~~g--Ip~e~~SCHT~VI~Gy~vEGHVPa~aI~ 97 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGF-EVKVVETDD------FLALKRRLG--IPYEMQSCHTAVINGYYVEGHVPAEAIA 97 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCc-EEEEeecCc------HHHHHHhcC--CChhhccccEEEEcCEEEeccCCHHHHH
Confidence 5889999999999888888888888 666655442 221111 22 44 33455544322 46788
Q ss_pred HHHhhhc
Q 042301 73 EYIDETW 79 (227)
Q Consensus 73 ~yL~~~~ 79 (227)
+.|++..
T Consensus 98 ~ll~~~p 104 (149)
T COG3019 98 RLLAEKP 104 (149)
T ss_pred HHHhCCC
Confidence 9988875
No 216
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=23.60 E-value=2e+02 Score=18.16 Aligned_cols=51 Identities=8% Similarity=-0.121 Sum_probs=30.9
Q ss_pred eEEeccCCChHHHHHHHHHHH----c--CCCCceeEecCCCCCChhhh-hhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQ----K--GVVDYEYIEEDIFNKSPRLL-ELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~--gi~~y~~~~v~~~~~~~~~~-~~np~~~~vP~L~ 59 (227)
+.+|+.++|+.|....-.+.. . +- .+.+..++... ...+. ..+- . .+|+++
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~i-~-~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDG-KVVVAKVDCTA-NNDLCSEYGV-R-GYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCC-ceEEEEeeccc-hHHHHHhCCC-C-CCCEEE
Confidence 567778899999887666544 2 23 44555555443 23443 3344 3 699886
No 217
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.54 E-value=1.3e+02 Score=22.43 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=25.9
Q ss_pred CCChHHHHHHHHHHHcCCCCceeEecCCCCCChhh
Q 042301 11 WASPFVFRVKVALQQKGVVDYEYIEEDIFNKSPRL 45 (227)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~y~~~~v~~~~~~~~~ 45 (227)
..-|..+++...|+..|| +|+....+.-..++..
T Consensus 9 SD~~~~~~a~~~L~~~gi-~~dv~V~SaHRtp~~~ 42 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGI-PYELRVVSAHRTPELM 42 (156)
T ss_pred hhHHHHHHHHHHHHHcCC-CeEEEEECcccCHHHH
Confidence 344789999999999999 9999887764433333
No 218
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=23.50 E-value=1.3e+02 Score=22.40 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=24.5
Q ss_pred ceEEeccCCChHHHHHH----HHHHHc-CCCCceeEecCCC
Q 042301 4 EVTLLGFWASPFVFRVK----VALQQK-GVVDYEYIEEDIF 39 (227)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~----~~l~~~-gi~~y~~~~v~~~ 39 (227)
++++|....||||.... -+++.. ++ .++.+.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~-~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV-EIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC-EEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-cEEEeccccc
Confidence 37899999999987644 344444 78 7777776653
No 219
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=23.40 E-value=1.6e+02 Score=19.66 Aligned_cols=53 Identities=9% Similarity=-0.083 Sum_probs=28.6
Q ss_pred eEEeccCCChHHHHHHHHHHHcC------C---CCceeEecCCCCCChhhhhhCCCCCccceEE
Q 042301 5 VTLLGFWASPFVFRVKVALQQKG------V---VDYEYIEEDIFNKSPRLLELNPVYKKVPVFI 59 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~g------i---~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~ 59 (227)
+..++.++|+.|+...-.+...- . ....+..+|......-..+.+- . .+|+++
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v-~-~~Ptl~ 83 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI-N-KYPTLK 83 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC-C-cCCEEE
Confidence 45677889999988765553211 1 0123334444333222233444 3 699987
No 220
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=22.89 E-value=88 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=20.0
Q ss_pred cceEE-eCCeeechhHHHHHHHhhhc
Q 042301 55 VPVFI-HGEKVVNESLIILEYIDETW 79 (227)
Q Consensus 55 vP~L~-~~~~~i~eS~~I~~yL~~~~ 79 (227)
+|.+. .+|.+++.|..|+++.....
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H 27 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRH 27 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcch
Confidence 35554 68999999999999988764
No 221
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.77 E-value=1.8e+02 Score=18.26 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=26.2
Q ss_pred eEEeccCCChHHHHHHHHHHHcCCCCceeEecC
Q 042301 5 VTLLGFWASPFVFRVKVALQQKGVVDYEYIEED 37 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~y~~~~v~ 37 (227)
.-+..|.....+.+..-.|...|+ +++.+.++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi-~~~liP~P 34 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI-PVRLIPTP 34 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC-cEEEeCCC
Confidence 345567777889999999999999 98887765
No 222
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=22.36 E-value=87 Score=19.32 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=16.2
Q ss_pred eEEecc----CCChHHHHHHHHHHH
Q 042301 5 VTLLGF----WASPFVFRVKVALQQ 25 (227)
Q Consensus 5 ~~Ly~~----~~sp~~~~v~~~l~~ 25 (227)
++||.+ ..|.||.||-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 677755 457899999988875
No 223
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=21.21 E-value=2.6e+02 Score=18.53 Aligned_cols=55 Identities=11% Similarity=-0.046 Sum_probs=29.2
Q ss_pred eEEeccCCChHHHHHHHHHHHc----C-CCCceeEecCCCCCChhhhhhCCCCCccceEE--eCCe
Q 042301 5 VTLLGFWASPFVFRVKVALQQK----G-VVDYEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEK 63 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~----g-i~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~ 63 (227)
+..++.++|+.|....-.+... + - ...+..++.. ..+.....+- . .+|+++ .+|.
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d-~~~~~~~~~v-~-~~Pt~~~~~~g~ 82 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEAD-TIDTLKRYRG-K-CEPTFLFYKNGE 82 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCC-CHHHHHHcCC-C-cCcEEEEEECCE
Confidence 4566778999998765444332 2 1 2233444443 2222334444 3 699877 3554
No 224
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=20.58 E-value=31 Score=25.13 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=25.3
Q ss_pred CCChhhhhhCCCCCccceEEeCCeeechhHHHHHHHhhhc
Q 042301 40 NKSPRLLELNPVYKKVPVFIHGEKVVNESLIILEYIDETW 79 (227)
Q Consensus 40 ~~~~~~~~~np~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 79 (227)
..+.++.-.-|-| +|+|+-|...=.++..|++||...-
T Consensus 76 rIsae~i~pYPPG--IPll~pGE~it~~~~~~i~yl~~l~ 113 (136)
T PF03711_consen 76 RISAEFIVPYPPG--IPLLVPGERITEETEEIIDYLLALQ 113 (136)
T ss_dssp SBBSS-BEECTTT--S-SB-TTEEB-STTHHHHHHHHHHH
T ss_pred eEEEeeeeecCCC--CcEECCccccccchHHHHHHHHHHH
Confidence 3556666667778 9999887666567889999998654
No 225
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=20.46 E-value=2.3e+02 Score=20.22 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=17.7
Q ss_pred hHHHHHHHhhcchhhhhcCCChH
Q 042301 186 VITEWSTKFVNHPLIKENLPARD 208 (227)
Q Consensus 186 ~l~~w~~~~~~~~~~~~~~~~~~ 208 (227)
-+..+|+++.+.|..+..+....
T Consensus 34 i~~~FY~~l~~~p~~~~~~~~~~ 56 (147)
T cd01068 34 LVDRFYDHLRRTPETAAFLGDES 56 (147)
T ss_pred HHHHHHHHHhcChHHHHHhCCch
Confidence 47788888888888888887543
No 226
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=20.43 E-value=1.1e+02 Score=19.39 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=17.4
Q ss_pred eEEeccCCChHHHHHHHHHHHc
Q 042301 5 VTLLGFWASPFVFRVKVALQQK 26 (227)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~ 26 (227)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3578889999999887777664
No 227
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.34 E-value=3.8e+02 Score=20.15 Aligned_cols=58 Identities=7% Similarity=0.000 Sum_probs=31.0
Q ss_pred EEeccCCChHHHHHHHHHHHcCC--CCceeEecCCCCCChhhhhhCCCCCccceEE--eCCeeec
Q 042301 6 TLLGFWASPFVFRVKVALQQKGV--VDYEYIEEDIFNKSPRLLELNPVYKKVPVFI--HGEKVVN 66 (227)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi--~~y~~~~v~~~~~~~~~~~~np~~~~vP~L~--~~~~~i~ 66 (227)
..++.++|+.|..+-=.|...-- +..++..|+.... ......+.. .+|+++ .+|..+.
T Consensus 88 V~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v~-~vPTlllyk~G~~v~ 149 (175)
T cd02987 88 VHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDTD-ALPALLVYKGGELIG 149 (175)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCCC-CCCEEEEEECCEEEE
Confidence 34566889888765433322111 0334555555432 344444444 799988 3775544
No 228
>PRK09266 hypothetical protein; Provisional
Probab=20.21 E-value=1.7e+02 Score=23.57 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHcCCCCceeEecCCCC--CChhhhhhCC-CCCccceEEeCCeeechhHHHHHHHhhhc
Q 042301 22 ALQQKGVVDYEYIEEDIFN--KSPRLLELNP-VYKKVPVFIHGEKVVNESLIILEYIDETW 79 (227)
Q Consensus 22 ~l~~~gi~~y~~~~v~~~~--~~~~~~~~np-~~~~vP~L~~~~~~i~eS~~I~~yL~~~~ 79 (227)
.+...|+ +.+...+++.+ ..++..-.|. .| -+||-..++..+.+...|.+.|.+.|
T Consensus 200 ~~~~~g~-~v~e~~i~~~eL~~adevfltnSl~g-i~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGI-PQRTRPVTLADLGRFAGAFACNAWRG-QRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCC-eeEEEECCHHHHHHhhHhhhhcCccc-eEEEEEECCEECCCCchHHHHHHHHH
Confidence 4556789 88888877642 2233333454 45 89999888877765567777777766
No 229
>PRK13947 shikimate kinase; Provisional
Probab=20.05 E-value=1.5e+02 Score=21.71 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=25.9
Q ss_pred CCcceEEeccCCChHHHHHHHHHHHcCCCCc
Q 042301 1 MAKEVTLLGFWASPFVFRVKVALQQKGVVDY 31 (227)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~y 31 (227)
|. .+.|.|.+.|.-+.-.+.+.+.+|+ +|
T Consensus 1 m~-~I~l~G~~GsGKst~a~~La~~lg~-~~ 29 (171)
T PRK13947 1 MK-NIVLIGFMGTGKTTVGKRVATTLSF-GF 29 (171)
T ss_pred CC-eEEEEcCCCCCHHHHHHHHHHHhCC-CE
Confidence 66 6889999999999999999999999 75
Done!