BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042303
         (519 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
           FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1
          Length = 680

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 100/230 (43%), Gaps = 26/230 (11%)

Query: 285 TEPNPVWKKEMMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEK 344
           T PN V+    +   R      +LP G   +  G + G     +   P   P +Y  ++ 
Sbjct: 465 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF--EDSTPVFTPEIYVPEQD 522

Query: 345 RHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNTHDGYKFDHKYPTELRVEKFSPPYL 404
               F +  P +I R+YHS+S+LLPDG+V   G         +H        + F+P YL
Sbjct: 523 T---FYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNH-----FDAQIFTPNYL 574

Query: 405 DPALAHL--RPEIVLDKSDCMVGYGQRISIQVKTTEGIKQSDIRITMYAPAFTTHGTSMN 462
             +  +L  RP+I    +   V  G RI+I   ++   K S IR   Y  A  TH  + +
Sbjct: 575 YNSNGNLATRPKITRTSTQS-VKVGGRITISTDSSI-TKASLIR---YGTA--THTVNTD 627

Query: 463 QRLVILGLVEVRNDVAPGQHKIVAEAPPSGVITPPGYYLLYVVYK-GVPS 511
           QR + L L         G +    + P    +  PGY++L+V+   GVPS
Sbjct: 628 QRRIPLTLTN------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPS 671


>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1
          Length = 680

 Score = 70.5 bits (171), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 100/230 (43%), Gaps = 26/230 (11%)

Query: 285 TEPNPVWKKEMMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEK 344
           T PN V+    +   R      +LP G   +  G + G     +   P   P +Y  ++ 
Sbjct: 465 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF--EDSTPVFTPEIYVPEQD 522

Query: 345 RHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNTHDGYKFDHKYPTELRVEKFSPPYL 404
               F +  P +I R+YHS+S+LLPDG+V   G         +H        + F+P YL
Sbjct: 523 T---FYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNH-----FDAQIFTPNYL 574

Query: 405 DPALAHL--RPEIVLDKSDCMVGYGQRISIQVKTTEGIKQSDIRITMYAPAFTTHGTSMN 462
             +  +L  RP+I    +   V  G RI+I   ++   K S IR   Y  A  TH  + +
Sbjct: 575 YNSNGNLATRPKITRTSTQS-VKVGGRITISTDSSIS-KASLIR---YGTA--THTVNTD 627

Query: 463 QRLVILGLVEVRNDVAPGQHKIVAEAPPSGVITPPGYYLLYVVYK-GVPS 511
           QR + L L         G +    + P    +  PGY++L+V+   GVPS
Sbjct: 628 QRRIPLTLTN------NGGNSYSFQVPSDSGVALPGYWMLFVMNSAGVPS 671


>sp|B9DLS6|HUTG_STACT Formimidoylglutamase OS=Staphylococcus carnosus (strain TM300)
           GN=hutG PE=3 SV=1
          Length = 309

 Score = 34.3 bits (77), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 22/142 (15%)

Query: 313 VLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLPDGK 372
           VL +  A N  S ++ AEE  +    Y T ++  H   E++PT   ++ H +        
Sbjct: 184 VLGIQSASNTKSLFDYAEERGIE---YVTADEILH---EISPTIKDKIDHFI-------- 229

Query: 373 VLIAGSNTHDGYKFDHKYPTELRVEKFSPPYLDPALAHLRPEIVLDKSDCMVGYGQRISI 432
                 N HD   F      ++    F+P    PA+  L P I+L+ S  +VG+ + +SI
Sbjct: 230 ------NRHDVIMF--TICMDVVDSAFAPGVSAPAVNGLTPHIILELSRRIVGHPKLVSI 281

Query: 433 QVKTTEGIKQSDIRITMYAPAF 454
            V  T  +   D R       F
Sbjct: 282 SVAETNPLYDMDNRTAKLVALF 303


>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
          Length = 943

 Score = 32.7 bits (73), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 115 EPRWYSTQVTLPDG-GFIVVGGRGAFSYEYI 144
           EPRW  T  TLP+G GFIV GG    ++  I
Sbjct: 15  EPRWGHTGTTLPNGSGFIVFGGNSNRAFNDI 45


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.138    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,124,396
Number of Sequences: 539616
Number of extensions: 10125237
Number of successful extensions: 18357
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18344
Number of HSP's gapped (non-prelim): 11
length of query: 519
length of database: 191,569,459
effective HSP length: 122
effective length of query: 397
effective length of database: 125,736,307
effective search space: 49917313879
effective search space used: 49917313879
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)