Query 042303
Match_columns 519
No_of_seqs 309 out of 1815
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07250 Glyoxal_oxid_N: Glyox 100.0 1E-51 2.2E-56 399.8 23.9 237 1-257 1-243 (243)
2 KOG4441 Proteins containing BT 100.0 1.1E-36 2.5E-41 331.9 28.4 252 47-367 300-568 (571)
3 KOG4441 Proteins containing BT 100.0 2.9E-35 6.4E-40 320.8 24.7 250 78-405 283-549 (571)
4 cd02851 Galactose_oxidase_C_te 100.0 2.6E-34 5.7E-39 240.6 12.3 99 407-519 1-101 (101)
5 PHA02713 hypothetical protein; 100.0 5.6E-33 1.2E-37 303.6 23.0 236 49-355 273-543 (557)
6 PF09118 DUF1929: Domain of un 100.0 1.1E-33 2.4E-38 237.2 9.6 97 412-518 1-98 (98)
7 PHA02713 hypothetical protein; 100.0 1.1E-31 2.4E-36 293.4 24.6 255 81-404 259-535 (557)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 9.3E-30 2E-34 263.4 28.1 250 73-382 11-333 (346)
9 PRK14131 N-acetylneuraminic ac 100.0 6.5E-28 1.4E-32 252.5 27.5 278 61-402 20-368 (376)
10 PHA02790 Kelch-like protein; P 100.0 4.4E-28 9.5E-33 261.2 24.9 218 53-403 251-471 (480)
11 PLN02153 epithiospecifier prot 100.0 1.9E-26 4.2E-31 238.3 30.0 281 55-382 4-326 (341)
12 TIGR03548 mutarot_permut cycli 100.0 1.3E-26 2.8E-31 237.8 24.5 251 75-383 9-316 (323)
13 PHA02790 Kelch-like protein; P 99.9 5.3E-26 1.2E-30 245.0 24.6 207 9-353 271-478 (480)
14 PHA03098 kelch-like protein; P 99.9 6.4E-26 1.4E-30 248.0 25.1 244 49-359 265-525 (534)
15 TIGR03547 muta_rot_YjhT mutatr 99.9 9.3E-25 2E-29 226.1 26.9 248 4-320 14-331 (346)
16 PLN02193 nitrile-specifier pro 99.9 6.3E-24 1.4E-28 228.4 32.1 274 52-382 141-455 (470)
17 TIGR03548 mutarot_permut cycli 99.9 1.7E-24 3.6E-29 222.1 25.6 262 3-320 9-313 (323)
18 PHA03098 kelch-like protein; P 99.9 2.1E-24 4.6E-29 236.0 25.5 247 82-404 253-513 (534)
19 PRK14131 N-acetylneuraminic ac 99.9 3.5E-24 7.6E-29 224.3 25.8 250 51-351 53-374 (376)
20 PLN02193 nitrile-specifier pro 99.9 2.4E-23 5.1E-28 223.9 27.5 261 77-404 118-412 (470)
21 PLN02153 epithiospecifier prot 99.9 5E-23 1.1E-27 212.8 26.6 265 2-342 26-339 (341)
22 KOG4693 Uncharacterized conser 99.7 2.5E-16 5.4E-21 150.1 21.0 259 70-381 14-313 (392)
23 KOG4693 Uncharacterized conser 99.7 4.1E-15 8.9E-20 141.8 18.1 248 2-320 17-312 (392)
24 KOG0379 Kelch repeat-containin 99.4 3.7E-11 8.1E-16 129.6 22.4 245 70-373 61-333 (482)
25 KOG0379 Kelch repeat-containin 99.4 4.4E-11 9.6E-16 129.1 20.9 208 112-382 56-287 (482)
26 KOG1230 Protein containing rep 99.1 2.2E-09 4.8E-14 108.5 17.0 220 80-381 79-318 (521)
27 KOG4152 Host cell transcriptio 99.1 2.1E-09 4.5E-14 110.9 17.0 276 58-381 17-343 (830)
28 PF07250 Glyoxal_oxid_N: Glyox 99.1 1.4E-09 3E-14 106.1 15.0 135 203-380 48-190 (243)
29 COG3055 Uncharacterized protei 99.1 1.1E-08 2.3E-13 102.4 19.8 263 62-383 29-362 (381)
30 COG3055 Uncharacterized protei 98.8 2E-07 4.2E-12 93.5 18.4 227 57-321 69-360 (381)
31 KOG4152 Host cell transcriptio 98.8 4.8E-08 1E-12 101.1 14.2 217 113-379 29-273 (830)
32 PF13964 Kelch_6: Kelch motif 98.8 7E-09 1.5E-13 76.2 5.7 50 299-359 1-50 (50)
33 KOG1230 Protein containing rep 98.8 7E-08 1.5E-12 97.9 14.3 157 193-380 79-252 (521)
34 smart00612 Kelch Kelch domain. 98.5 2.8E-07 6E-12 65.9 4.9 45 312-367 1-45 (47)
35 PF01344 Kelch_1: Kelch motif; 98.4 2.1E-07 4.5E-12 67.2 3.4 47 299-356 1-47 (47)
36 PF13964 Kelch_6: Kelch motif 98.3 1.3E-06 2.9E-11 63.9 4.9 46 70-117 2-50 (50)
37 PF13418 Kelch_4: Galactose ox 98.1 2.8E-06 6E-11 61.9 3.4 48 299-356 1-48 (49)
38 smart00612 Kelch Kelch domain. 98.0 7.7E-06 1.7E-10 58.3 4.8 45 81-128 1-47 (47)
39 PF13415 Kelch_3: Galactose ox 98.0 1.1E-05 2.5E-10 58.7 5.4 48 310-366 1-48 (49)
40 PF07646 Kelch_2: Kelch motif; 98.0 1.8E-05 4E-10 57.6 5.6 49 299-356 1-49 (49)
41 PF13415 Kelch_3: Galactose ox 97.6 0.00013 2.9E-09 53.0 5.1 44 79-124 1-48 (49)
42 PF01344 Kelch_1: Kelch motif; 97.6 2.9E-05 6.4E-10 55.7 1.4 43 70-114 2-47 (47)
43 PLN02772 guanylate kinase 97.1 0.0011 2.4E-08 69.0 7.4 70 299-380 24-96 (398)
44 PF07646 Kelch_2: Kelch motif; 97.1 0.00078 1.7E-08 49.0 4.5 42 70-113 2-48 (49)
45 PF13418 Kelch_4: Galactose ox 96.9 0.00053 1.1E-08 49.7 2.1 42 71-114 4-48 (49)
46 PLN02772 guanylate kinase 96.6 0.0064 1.4E-07 63.5 7.7 68 69-137 24-96 (398)
47 KOG0286 G-protein beta subunit 95.8 2.3 4.9E-05 42.5 24.0 246 50-379 79-335 (343)
48 PRK11138 outer membrane biogen 95.6 3.8 8.2E-05 43.1 24.6 241 49-378 131-384 (394)
49 COG4257 Vgb Streptogramin lyas 95.3 2.4 5.1E-05 42.2 18.3 231 51-372 86-327 (353)
50 PF13854 Kelch_5: Kelch motif 95.2 0.039 8.5E-07 38.6 4.6 41 296-343 1-41 (42)
51 KOG0286 G-protein beta subunit 94.3 6.5 0.00014 39.4 20.1 243 8-319 75-335 (343)
52 PRK11138 outer membrane biogen 94.0 9.4 0.0002 40.1 26.8 67 72-149 113-181 (394)
53 cd00200 WD40 WD40 domain, foun 94.0 5.7 0.00012 37.5 25.6 87 50-144 33-120 (289)
54 KOG0310 Conserved WD40 repeat- 93.3 8.8 0.00019 40.8 18.6 248 46-381 46-301 (487)
55 TIGR01640 F_box_assoc_1 F-box 93.1 1.7 3.8E-05 41.9 12.8 144 48-211 70-230 (230)
56 TIGR03866 PQQ_ABC_repeats PQQ- 92.8 10 0.00022 37.0 24.4 88 49-144 54-142 (300)
57 PF13854 Kelch_5: Kelch motif 92.5 0.14 2.9E-06 35.8 2.9 24 113-137 1-24 (42)
58 TIGR03866 PQQ_ABC_repeats PQQ- 92.4 11 0.00025 36.7 26.1 87 50-144 13-100 (300)
59 KOG2437 Muskelin [Signal trans 92.1 0.24 5.1E-06 52.6 5.4 154 192-379 272-456 (723)
60 KOG0315 G-protein beta subunit 91.1 17 0.00036 35.8 19.8 228 40-344 53-290 (311)
61 PF10282 Lactonase: Lactonase, 91.1 21 0.00045 36.9 22.8 95 48-144 15-114 (345)
62 TIGR01640 F_box_assoc_1 F-box 90.3 7.9 0.00017 37.3 14.0 153 192-378 5-161 (230)
63 PRK11028 6-phosphogluconolacto 89.3 27 0.00058 35.5 27.9 91 51-144 60-153 (330)
64 PLN00181 protein SPA1-RELATED; 89.1 41 0.00089 39.0 20.9 142 191-381 586-730 (793)
65 KOG0310 Conserved WD40 repeat- 88.8 31 0.00067 36.8 17.3 51 249-320 249-300 (487)
66 PF08450 SGL: SMP-30/Gluconola 88.0 17 0.00037 35.3 14.6 29 191-220 50-78 (246)
67 PF13360 PQQ_2: PQQ-like domai 87.7 19 0.00041 34.2 14.5 140 189-380 33-183 (238)
68 PF07893 DUF1668: Protein of u 87.3 14 0.00031 38.2 14.1 42 48-89 86-127 (342)
69 KOG2437 Muskelin [Signal trans 86.8 0.78 1.7E-05 48.8 4.3 48 103-151 238-301 (723)
70 PRK13684 Ycf48-like protein; P 86.2 44 0.00095 34.5 23.6 74 288-379 245-322 (334)
71 PF07893 DUF1668: Protein of u 84.8 14 0.00029 38.4 12.5 118 77-215 74-213 (342)
72 TIGR03300 assembly_YfgL outer 82.0 67 0.0014 33.2 22.1 77 279-378 202-287 (377)
73 COG5184 ATS1 Alpha-tubulin sup 81.2 84 0.0018 33.8 17.8 82 52-136 90-203 (476)
74 PRK11028 6-phosphogluconolacto 79.9 72 0.0016 32.3 25.4 92 50-144 14-107 (330)
75 PF14870 PSII_BNR: Photosynthe 79.0 53 0.0011 33.5 13.9 83 51-137 169-253 (302)
76 cd00200 WD40 WD40 domain, foun 78.8 57 0.0012 30.4 21.7 61 76-144 17-78 (289)
77 PRK13684 Ycf48-like protein; P 78.6 85 0.0018 32.3 23.5 75 288-379 203-279 (334)
78 cd02849 CGTase_C_term Cgtase ( 78.6 16 0.00035 29.4 8.1 77 412-516 2-79 (81)
79 TIGR03300 assembly_YfgL outer 75.1 57 0.0012 33.8 13.5 27 189-215 62-91 (377)
80 KOG0315 G-protein beta subunit 74.1 34 0.00075 33.7 10.3 142 187-382 46-190 (311)
81 PF14870 PSII_BNR: Photosynthe 71.9 1.2E+02 0.0026 30.9 20.3 243 56-380 4-253 (302)
82 KOG0266 WD40 repeat-containing 70.7 1.6E+02 0.0034 31.7 22.1 202 67-344 202-411 (456)
83 KOG0278 Serine/threonine kinas 70.4 1.2E+02 0.0025 30.1 13.2 66 295-381 222-289 (334)
84 PF13088 BNR_2: BNR repeat-lik 67.9 16 0.00035 35.9 7.0 57 75-132 214-275 (275)
85 PTZ00421 coronin; Provisional 66.6 2E+02 0.0044 31.4 16.1 22 193-214 138-161 (493)
86 PTZ00420 coronin; Provisional 65.2 1.7E+02 0.0036 32.7 14.8 87 49-144 149-245 (568)
87 KOG0271 Notchless-like WD40 re 65.2 19 0.00041 37.4 6.8 56 308-381 124-179 (480)
88 KOG0303 Actin-binding protein 63.8 86 0.0019 32.9 11.1 81 48-136 154-236 (472)
89 PF07433 DUF1513: Protein of u 63.5 1.4E+02 0.003 30.6 12.5 97 192-318 16-118 (305)
90 PF13540 RCC1_2: Regulator of 62.9 8.8 0.00019 24.6 2.6 20 2-21 10-29 (30)
91 PF15418 DUF4625: Domain of un 61.9 54 0.0012 29.1 8.4 103 410-518 12-131 (132)
92 PLN02919 haloacid dehalogenase 61.2 3.7E+02 0.0079 32.5 17.8 59 305-380 809-879 (1057)
93 KOG0278 Serine/threonine kinas 60.8 85 0.0018 31.1 10.0 90 94-213 166-258 (334)
94 PRK04792 tolB translocation pr 60.0 81 0.0018 33.9 11.1 90 49-143 287-376 (448)
95 PF07433 DUF1513: Protein of u 59.5 94 0.002 31.7 10.6 86 48-136 28-120 (305)
96 PF12768 Rax2: Cortical protei 58.5 59 0.0013 32.8 9.0 86 281-379 20-110 (281)
97 PF08450 SGL: SMP-30/Gluconola 58.5 75 0.0016 30.6 9.7 79 278-379 23-105 (246)
98 PTZ00421 coronin; Provisional 58.1 2E+02 0.0044 31.4 13.8 52 50-105 150-201 (493)
99 cd00604 IPT_CGTD IPT domain (d 56.3 91 0.002 25.1 8.1 78 413-518 1-79 (81)
100 PF13088 BNR_2: BNR repeat-lik 55.9 19 0.00042 35.4 5.1 80 285-375 190-275 (275)
101 PF03088 Str_synth: Strictosid 54.0 13 0.00028 30.6 2.9 69 3-85 3-74 (89)
102 PLN00033 photosystem II stabil 53.8 3E+02 0.0065 29.2 15.3 77 53-136 265-347 (398)
103 KOG0272 U4/U6 small nuclear ri 52.6 24 0.00051 37.1 5.1 126 8-144 239-372 (459)
104 COG4257 Vgb Streptogramin lyas 52.6 86 0.0019 31.6 8.6 84 278-379 84-167 (353)
105 PRK03629 tolB translocation pr 49.3 1.5E+02 0.0032 31.6 10.9 83 50-137 269-351 (429)
106 KOG0271 Notchless-like WD40 re 49.3 38 0.00083 35.3 5.9 67 76-150 123-191 (480)
107 KOG0289 mRNA splicing factor [ 49.0 2.4E+02 0.0052 30.1 11.6 121 184-356 350-473 (506)
108 PRK03629 tolB translocation pr 48.4 1.6E+02 0.0034 31.4 10.9 82 51-138 314-395 (429)
109 TIGR02800 propeller_TolB tol-p 48.4 2.1E+02 0.0046 29.7 11.9 85 49-138 259-343 (417)
110 KOG0643 Translation initiation 47.0 1.5E+02 0.0032 29.7 9.2 17 187-203 293-309 (327)
111 TIGR02608 delta_60_rpt delta-6 45.8 17 0.00037 27.1 2.1 16 365-380 6-21 (55)
112 COG1520 FOG: WD40-like repeat 44.6 3.7E+02 0.0081 27.7 20.5 260 50-379 80-354 (370)
113 COG2706 3-carboxymuconate cycl 43.7 2.7E+02 0.0059 28.8 11.0 94 43-144 210-318 (346)
114 KOG2055 WD40 repeat protein [G 43.6 3.1E+02 0.0068 29.5 11.5 82 49-137 281-365 (514)
115 PRK05137 tolB translocation pr 43.3 2.4E+02 0.0053 29.9 11.5 81 50-135 272-352 (435)
116 KOG0279 G protein beta subunit 42.4 3.7E+02 0.008 27.1 11.2 138 48-212 78-225 (315)
117 PF13360 PQQ_2: PQQ-like domai 41.6 3E+02 0.0065 25.8 14.4 24 189-212 73-97 (238)
118 PRK01742 tolB translocation pr 41.5 2.2E+02 0.0048 30.2 10.8 79 50-134 230-309 (429)
119 PTZ00420 coronin; Provisional 41.2 4.1E+02 0.009 29.7 12.9 26 309-343 224-249 (568)
120 PF00868 Transglut_N: Transglu 40.2 1.4E+02 0.003 25.8 7.4 22 481-505 94-115 (118)
121 PRK05137 tolB translocation pr 39.6 2.8E+02 0.0061 29.4 11.2 81 49-134 227-307 (435)
122 PRK04922 tolB translocation pr 38.3 3.1E+02 0.0066 29.1 11.3 81 49-134 273-353 (433)
123 PRK00178 tolB translocation pr 38.2 3E+02 0.0065 29.0 11.2 82 50-136 269-350 (430)
124 KOG1036 Mitotic spindle checkp 37.4 4.6E+02 0.01 26.7 12.3 83 50-144 77-160 (323)
125 PF10282 Lactonase: Lactonase, 36.9 1.6E+02 0.0035 30.3 8.5 92 48-144 216-319 (345)
126 PRK01029 tolB translocation pr 36.1 1.5E+02 0.0032 31.7 8.3 59 49-109 352-410 (428)
127 TIGR03075 PQQ_enz_alc_DH PQQ-d 36.0 4.8E+02 0.011 28.7 12.5 23 190-212 67-90 (527)
128 TIGR03437 Soli_cterm Solibacte 35.4 76 0.0016 30.7 5.4 37 480-519 179-215 (215)
129 COG3490 Uncharacterized protei 35.2 2.1E+02 0.0045 29.1 8.4 85 47-134 90-179 (366)
130 PF03089 RAG2: Recombination a 35.1 5E+02 0.011 26.4 16.1 82 295-381 83-175 (337)
131 PF12768 Rax2: Cortical protei 32.8 2E+02 0.0042 29.1 8.1 63 45-111 14-81 (281)
132 PRK04922 tolB translocation pr 32.7 3.9E+02 0.0085 28.3 11.0 81 50-136 318-398 (433)
133 PRK04792 tolB translocation pr 32.6 4.7E+02 0.01 28.0 11.6 79 50-134 244-323 (448)
134 KOG0263 Transcription initiati 32.4 8.1E+02 0.018 28.0 13.3 60 304-382 582-642 (707)
135 TIGR03075 PQQ_enz_alc_DH PQQ-d 32.3 2.3E+02 0.0049 31.3 9.2 95 249-377 69-172 (527)
136 KOG0639 Transducin-like enhanc 32.0 3.8E+02 0.0081 29.3 10.0 139 193-380 432-572 (705)
137 PLN00181 protein SPA1-RELATED; 31.2 8.8E+02 0.019 28.0 20.2 21 123-144 490-510 (793)
138 PF10670 DUF4198: Domain of un 30.7 4E+02 0.0087 24.8 9.7 68 421-506 144-211 (215)
139 PRK02889 tolB translocation pr 30.5 5.1E+02 0.011 27.4 11.4 82 49-135 265-346 (427)
140 COG1520 FOG: WD40-like repeat 30.4 6.2E+02 0.013 26.0 13.9 136 189-378 65-205 (370)
141 PRK00178 tolB translocation pr 29.3 6E+02 0.013 26.6 11.7 60 49-110 224-283 (430)
142 PRK02889 tolB translocation pr 28.4 6E+02 0.013 26.9 11.5 78 50-133 222-300 (427)
143 TIGR02800 propeller_TolB tol-p 27.6 5.3E+02 0.011 26.7 10.8 59 49-109 215-273 (417)
144 PLN02919 haloacid dehalogenase 27.2 7.7E+02 0.017 29.8 13.1 68 75-147 810-889 (1057)
145 PRK02888 nitrous-oxide reducta 27.2 9.5E+02 0.021 27.2 20.7 50 93-144 296-348 (635)
146 PF10633 NPCBM_assoc: NPCBM-as 26.7 2.1E+02 0.0046 22.3 5.8 71 425-505 2-74 (78)
147 PF03089 RAG2: Recombination a 25.9 3.2E+02 0.0069 27.7 7.8 46 44-89 127-174 (337)
148 KOG0285 Pleiotropic regulator 24.9 8.2E+02 0.018 25.7 12.7 91 202-344 216-309 (460)
149 KOG1427 Uncharacterized conser 24.7 1.8E+02 0.0039 29.6 5.9 92 362-472 120-215 (443)
150 cd00216 PQQ_DH Dehydrogenases 24.5 9.2E+02 0.02 26.1 15.5 146 189-379 58-237 (488)
151 COG3490 Uncharacterized protei 24.1 4.1E+02 0.0089 27.0 8.3 89 298-403 112-203 (366)
152 PF08662 eIF2A: Eukaryotic tra 24.0 2.5E+02 0.0053 26.3 6.7 79 49-135 84-162 (194)
153 PF07705 CARDB: CARDB; InterP 23.4 3.8E+02 0.0082 21.2 7.2 69 421-506 12-83 (101)
154 PRK01029 tolB translocation pr 23.2 9.2E+02 0.02 25.6 11.7 58 73-134 331-388 (428)
155 PF01436 NHL: NHL repeat; Int 22.3 1.7E+02 0.0038 18.1 3.6 16 362-378 5-20 (28)
156 smart00155 PLDc Phospholipase 21.6 1E+02 0.0022 19.1 2.4 21 300-320 3-23 (28)
157 KOG0646 WD40 repeat protein [G 21.4 1E+03 0.023 25.6 14.8 52 77-138 90-145 (476)
158 KOG0649 WD40 repeat protein [G 21.3 5E+02 0.011 25.8 8.0 41 48-88 178-226 (325)
159 KOG0279 G protein beta subunit 20.9 8.8E+02 0.019 24.6 12.5 42 335-382 173-215 (315)
160 TIGR02658 TTQ_MADH_Hv methylam 20.4 9.8E+02 0.021 24.9 11.9 104 184-316 48-172 (352)
161 cd00260 Sialidase Sialidases o 20.4 4E+02 0.0087 27.1 8.1 66 66-133 252-333 (351)
162 PF08662 eIF2A: Eukaryotic tra 20.2 2.4E+02 0.0052 26.4 5.8 55 307-378 108-162 (194)
163 PF10342 GPI-anchored: Ser-Thr 20.2 4.4E+02 0.0096 20.8 8.6 72 422-506 7-78 (93)
No 1
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=100.00 E-value=1e-51 Score=399.76 Aligned_cols=237 Identities=47% Similarity=0.863 Sum_probs=214.3
Q ss_pred CeeeeeCCCCEEEEEecccccccCcCCCCCCCCccccCC-CCCCCccceeEEEEECCCCcEEECccCCCcccCCCeeccC
Q 042303 1 MHAILLPKVNQVLMYDATVWKISKIPLPQEKMPCRVIDP-KTNEVDCWAHSVLFDIETAKLKPLKIQTDTWCSSGGLTVD 79 (519)
Q Consensus 1 ~h~~ll~~~g~vl~~~~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~d 79 (519)
|||+|| ++|||++||++++|+|++.+|+| +||+++. ..++.||++|+.+|||.|++++++...+|.||+++++|+|
T Consensus 1 mh~~~~-~~~~v~~~d~t~~g~s~~~~~~~--~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~d 77 (243)
T PF07250_consen 1 MHMALL-HNNKVIMFDRTNFGPSNISLPDG--RCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPD 77 (243)
T ss_pred CeEeEc-cCCEEEEEeCCCcccccccCCCC--ccccCccccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCCCC
Confidence 999999 99999999999999999999999 9999888 8889999999999999999999999999999999999999
Q ss_pred CeEEEecCCCCCCceEEEEeCCC---CCccccCCCCCCCccccceEEEcCCCcEEEEcCCCCCceEEeCCCCCCCCcccc
Q 042303 80 GHLVGTGGYQGGANTVRYLWTCD---TCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGAFSYEYIPPQGQSNKQSIY 156 (519)
Q Consensus 80 G~llv~GG~~~g~~~v~~ydp~~---~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~~~~E~yP~~~~w~~~~~~ 156 (519)
|+++++||+.+|.+.++.|+|+. +++|.+..+.|..+|||+|+++|+||+|+|+||+..+++|+||.... ......
T Consensus 78 G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~-~~~~~~ 156 (243)
T PF07250_consen 78 GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP-GPGPVT 156 (243)
T ss_pred CCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccC-CCCcee
Confidence 99999999999999999999983 48999887669999999999999999999999999999999976432 222344
Q ss_pred cccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEec
Q 042303 157 LPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNRSILFDPKANRVIREYPVLTGGSRNYPASGMSVLL 236 (519)
Q Consensus 157 ~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l 236 (519)
++++..+.+. .++|+||++++++||+||+++++.+++||++++++++.+|.||++.|+||.+|++|||
T Consensus 157 ~~~l~~~~~~------------~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmL 224 (243)
T PF07250_consen 157 LPFLSQTSDT------------LPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVML 224 (243)
T ss_pred eecchhhhcc------------CccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEe
Confidence 5666555432 4689999999999999999999999999999999878899999999999999999999
Q ss_pred cc--ccccCCccccCCeEEEEcC
Q 042303 237 PI--KLHAGHQKIIHSDILVCGG 257 (519)
Q Consensus 237 ~l--~~~~~~~~~~~gkI~v~GG 257 (519)
|| .+ .+++..+|++|||
T Consensus 225 Pl~~~~----~~~~~~evlvCGG 243 (243)
T PF07250_consen 225 PLTDTP----PNNYTAEVLVCGG 243 (243)
T ss_pred cCccCC----CCCCCeEEEEeCC
Confidence 99 53 4578999999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=331.85 Aligned_cols=252 Identities=22% Similarity=0.289 Sum_probs=213.8
Q ss_pred ceeEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCC---CCceEEEEeCCCCCccccCCCCCCCccccceEE
Q 042303 47 WAHSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQG---GANTVRYLWTCDTCDWIEYPTALAEPRWYSTQV 123 (519)
Q Consensus 47 ~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~---g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~ 123 (519)
....++|||.+++|..++.++..+|..+++..+|.||++||.+. ..+++++|||. +++|+.+++ |+.+|+.++++
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~-~~~W~~~a~-M~~~R~~~~v~ 377 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPR-TNQWTPVAP-MNTKRSDFGVA 377 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCC-CCceeccCC-ccCccccceeE
Confidence 45788999999999999999999999999999999999999983 35899999999 899999996 99999999999
Q ss_pred EcCCCcEEEEcCCCC----CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEE
Q 042303 124 TLPDGGFIVVGGRGA----FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIF 198 (519)
Q Consensus 124 ~L~dG~V~viGG~~~----~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~ 198 (519)
++ +|+||++||+++ .++|+| |.+++|. ...||+..+ +-++++..+|+||++
T Consensus 378 ~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~---~va~m~~~r--------------------~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 378 VL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWT---PVAPMLTRR--------------------SGHGVAVLGGKLYII 433 (571)
T ss_pred EE-CCEEEEEeccccccccccEEEecCCCCccc---ccCCCCcce--------------------eeeEEEEECCEEEEE
Confidence 99 999999999986 579999 9999996 366675432 125778899999999
Q ss_pred eCC--------ceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCccccccccc
Q 042303 199 SNN--------RSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKK 270 (519)
Q Consensus 199 Gg~--------~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~ 270 (519)
||. ++++|||.+|+|. .+|+|+. +|.+ .|.+++ +++||++||.+. .
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~~-~R~~--~g~a~~-------------~~~iYvvGG~~~-~-------- 487 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWT-LIAPMNT-RRSG--FGVAVL-------------NGKIYVVGGFDG-T-------- 487 (571)
T ss_pred cCcCCCccccceEEEEcCCCCcee-ecCCccc-cccc--ceEEEE-------------CCEEEEECCccC-C--------
Confidence 994 4799999999997 7999985 5543 455554 999999999873 2
Q ss_pred ccccCCCceEEEEecCCCCceEec-cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCccee
Q 042303 271 QFWPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRF 349 (519)
Q Consensus 271 ~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W 349 (519)
..+.++|+|||. +++|+.. +|+.+|..+..++ .++++|++||.. | ...+.++|+|||++| +|
T Consensus 488 ---~~~~~VE~ydp~--~~~W~~v~~m~~~rs~~g~~~-~~~~ly~vGG~~-~-------~~~l~~ve~ydp~~d---~W 550 (571)
T KOG4441|consen 488 ---SALSSVERYDPE--TNQWTMVAPMTSPRSAVGVVV-LGGKLYAVGGFD-G-------NNNLNTVECYDPETD---TW 550 (571)
T ss_pred ---CccceEEEEcCC--CCceeEcccCccccccccEEE-ECCEEEEEeccc-C-------ccccceeEEcCCCCC---ce
Confidence 246789999998 8999999 9999999988554 599999999964 2 234568999999999 99
Q ss_pred eecCCCCcCCccceeeeE
Q 042303 350 QELAPTTIPRMYHSVSVL 367 (519)
Q Consensus 350 ~~~~~~~~~R~yhs~a~L 367 (519)
+...++...|...+++++
T Consensus 551 ~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 551 TEVTEPESGRGGAGVAVI 568 (571)
T ss_pred eeCCCccccccCcceEEe
Confidence 999998888887776665
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=320.78 Aligned_cols=250 Identities=25% Similarity=0.371 Sum_probs=206.2
Q ss_pred cCCeEEEecCCCC---CCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcEEEEcCCC-C----CceEEe-CCCC
Q 042303 78 VDGHLVGTGGYQG---GANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRG-A----FSYEYI-PPQG 148 (519)
Q Consensus 78 ~dG~llv~GG~~~---g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~-~----~~~E~y-P~~~ 148 (519)
..+.|+++||... ..+.+++|||. ++.|..+++ |+.+|..++++++ +|+|||+||.+ + .++|+| |.++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~-~~~w~~~a~-m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPK-TNEWSSLAP-MPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCC-cCcEeecCC-CCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3588999999874 25799999999 899999996 9999999999998 89999999998 3 579999 9999
Q ss_pred CCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCc-------eEEeeCCCCeEEEEccCCC
Q 042303 149 QSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNR-------SILFDPKANRVIREYPVLT 221 (519)
Q Consensus 149 ~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~-------~~~yDp~t~~w~~~~p~~p 221 (519)
+|.. ..||.+.+.+ +.++..+|+||++||++ +|+|||.+|+|. .+++|+
T Consensus 360 ~W~~---~a~M~~~R~~--------------------~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~ 415 (571)
T KOG4441|consen 360 QWTP---VAPMNTKRSD--------------------FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPML 415 (571)
T ss_pred ceec---cCCccCcccc--------------------ceeEEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCC
Confidence 9963 5566543221 35778899999999974 899999999998 699887
Q ss_pred CCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCceEec-cCCcce
Q 042303 222 GGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRR 300 (519)
Q Consensus 222 ~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R 300 (519)
. .|. ..|.+++ +|+||++||.+... ..++++|+|||. +++|+.. +|+.+|
T Consensus 416 ~-~r~--~~gv~~~-------------~g~iYi~GG~~~~~-----------~~l~sve~YDP~--t~~W~~~~~M~~~R 466 (571)
T KOG4441|consen 416 T-RRS--GHGVAVL-------------GGKLYIIGGGDGSS-----------NCLNSVECYDPE--TNTWTLIAPMNTRR 466 (571)
T ss_pred c-cee--eeEEEEE-------------CCEEEEEcCcCCCc-----------cccceEEEEcCC--CCceeecCCccccc
Confidence 5 443 1344443 99999999986321 257899999998 8999999 999999
Q ss_pred eeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeeeEcCCCcEEEecCCC
Q 042303 301 VMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNT 380 (519)
Q Consensus 301 ~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~ 380 (519)
.+++++++ +|+||++||.+. .....++|+|||+++ +|+.+++|+.+|..++++++ ++++|+.||..
T Consensus 467 ~~~g~a~~-~~~iYvvGG~~~--------~~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~ 532 (571)
T KOG4441|consen 467 SGFGVAVL-NGKIYVVGGFDG--------TSALSSVERYDPETN---QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFD 532 (571)
T ss_pred ccceEEEE-CCEEEEECCccC--------CCccceEEEEcCCCC---ceeEcccCccccccccEEEE--CCEEEEEeccc
Confidence 99996555 999999999862 123456999999999 99999999999999998888 99999999965
Q ss_pred CCCCccCCCCCceeeEEEEcCCCCC
Q 042303 381 HDGYKFDHKYPTELRVEKFSPPYLD 405 (519)
Q Consensus 381 ~~~~~~~~~~p~~~~vEiy~Ppyl~ 405 (519)
...+ ..++|+|+|..=.
T Consensus 533 ~~~~--------l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 533 GNNN--------LNTVECYDPETDT 549 (571)
T ss_pred Cccc--------cceeEEcCCCCCc
Confidence 5433 4589999988743
No 4
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=100.00 E-value=2.6e-34 Score=240.58 Aligned_cols=99 Identities=24% Similarity=0.360 Sum_probs=88.8
Q ss_pred ccCCCCCceecCCCC-CccccCceEEEEEEeccccccceEEEEEEeCCcccccCCCCCceEEeeeeeeeecCCCCcEEEE
Q 042303 407 ALAHLRPEIVLDKSD-CMVGYGQRISIQVKTTEGIKQSDIRITMYAPAFTTHGTSMNQRLVILGLVEVRNDVAPGQHKIV 485 (519)
Q Consensus 407 ~~~~~RP~i~~~~~p-~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~ 485 (519)
|..+.||+|+++ | .+++||++|+|+++. .+.+|+|+|++|+|||+|||||+|+|+++.. . +.+++
T Consensus 1 g~~a~RP~I~~~--p~~~i~yG~~f~v~~~~------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~~-----~-~~~~~ 66 (101)
T cd02851 1 GTLASRPVITSA--STQTAKVGDTITVSTDS------PISSASLVRYGSATHTVNTDQRRIPLTLFSV-----G-GNSYS 66 (101)
T ss_pred CCCCCCCeeccC--CccccccCCEEEEEEec------cceEEEEEecccccccccCCccEEEeeeEec-----C-CCEEE
Confidence 346789999999 8 899999999999872 4899999999999999999999999999752 2 35678
Q ss_pred EEcCCCCCcCCCcceEEEEEc-CCcCCccEEEEeC
Q 042303 486 AEAPPSGVITPPGYYLLYVVY-KGVPSPGMWFQIK 519 (519)
Q Consensus 486 v~~P~~~~~~ppG~ymlf~~~-~gvPS~a~~v~i~ 519 (519)
|++|+|++|||||||||||++ +||||+|+||+|.
T Consensus 67 v~~P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~ 101 (101)
T cd02851 67 VQIPSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT 101 (101)
T ss_pred EEcCCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence 888999999999999999995 9999999999985
No 5
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.6e-33 Score=303.58 Aligned_cols=236 Identities=13% Similarity=0.148 Sum_probs=189.3
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCC---CCceEEEEeCCCCCccccCCCCCCCccccceEEEc
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQG---GANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTL 125 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~---g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L 125 (519)
..++|||.+++|+.++.++..++..+++..+++||++||... ..+.+++|||. +++|.++++ |+.+|.+++++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~-~n~W~~~~~-m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE-NKIHVELPP-MIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC-CCeEeeCCC-CcchhhceeEEEE
Confidence 457899999999999988877777778888999999999742 25789999999 899999986 9999999999998
Q ss_pred CCCcEEEEcCCCC----CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeC
Q 042303 126 PDGGFIVVGGRGA----FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSN 200 (519)
Q Consensus 126 ~dG~V~viGG~~~----~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg 200 (519)
+|+|||+||.++ .++|+| |.+++|.. ..||...+.. ++.+..+|+||++||
T Consensus 351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~---~~~mp~~r~~--------------------~~~~~~~g~IYviGG 406 (557)
T PHA02713 351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKM---LPDMPIALSS--------------------YGMCVLDQYIYIIGG 406 (557)
T ss_pred -CCEEEEECCcCCCCCCceEEEEECCCCeEEE---CCCCCccccc--------------------ccEEEECCEEEEEeC
Confidence 999999999864 469999 99999963 3455432211 245677999999998
Q ss_pred Cc-------------------------eEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEE
Q 042303 201 NR-------------------------SILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVC 255 (519)
Q Consensus 201 ~~-------------------------~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~ 255 (519)
.+ +++|||.+|+|. .+++|+. +|.. ++.+++ +++||++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~-~r~~--~~~~~~-------------~~~IYv~ 469 (557)
T PHA02713 407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWT-GTIR--PGVVSH-------------KDDIYVV 469 (557)
T ss_pred CCcccccccccccccccccccccccceEEEECCCCCeEe-ecCCCCc-cccc--CcEEEE-------------CCEEEEE
Confidence 42 678999999998 6999975 4442 344443 8999999
Q ss_pred cCCCCCcccccccccccccCCCceEEEEecCCC-CceEec-cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCc
Q 042303 256 GGAAWDAFYYAEDKKQFWPALQDCGRIRITEPN-PVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPA 333 (519)
Q Consensus 256 GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~-~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~ 333 (519)
||.+... ...+++|+|||. + ++|+.. +|+.+|..++++++ +|+||++||.. | .
T Consensus 470 GG~~~~~-----------~~~~~ve~Ydp~--~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~-~----------~ 524 (557)
T PHA02713 470 CDIKDEK-----------NVKTCIFRYNTN--TYNGWELITTTESRLSALHTILH-DNTIMMLHCYE-S----------Y 524 (557)
T ss_pred eCCCCCC-----------ccceeEEEecCC--CCCCeeEccccCcccccceeEEE-CCEEEEEeeec-c----------e
Confidence 9975211 113468999998 6 799999 99999999997665 99999999975 2 1
Q ss_pred cccEEEeCCCCCcceeeecCCC
Q 042303 334 LAPALYKTKEKRHHRFQELAPT 355 (519)
Q Consensus 334 ~~~e~YdP~t~~g~~W~~~~~~ 355 (519)
.++|+|||.++ +|+.+++-
T Consensus 525 ~~~e~yd~~~~---~W~~~~~~ 543 (557)
T PHA02713 525 MLQDTFNVYTY---EWNHICHQ 543 (557)
T ss_pred eehhhcCcccc---cccchhhh
Confidence 26899999999 99998774
No 6
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=100.00 E-value=1.1e-33 Score=237.19 Aligned_cols=97 Identities=36% Similarity=0.702 Sum_probs=68.1
Q ss_pred CCceecCCCCCccccCceEEEEEEeccccccceEEEEEEeCCcccccCCCCCceEEeeeeeeeecCCCCcEEEEEEcCCC
Q 042303 412 RPEIVLDKSDCMVGYGQRISIQVKTTEGIKQSDIRITMYAPAFTTHGTSMNQRLVILGLVEVRNDVAPGQHKIVAEAPPS 491 (519)
Q Consensus 412 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~ 491 (519)
||+|+++ |.++.||++|+|+++.+. ..++.+|+|+|++|+|||+|||||+|+|++... + +++++|++|+|
T Consensus 1 RP~i~~~--p~~i~yg~~~tv~~~~~~--~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~~-----~-~~~~~v~~P~~ 70 (98)
T PF09118_consen 1 RPVITSA--PTTIKYGQTFTVTVTVPS--AASIVKVSLVRPGFVTHSFNMGQRMVELEFVSG-----G-GNTVTVTAPPN 70 (98)
T ss_dssp ---EEES---SEEETT-EEEEEE--SS-----ESEEEEEE--EEETTB-SS-EEEEE-EEEE-----S-SSEEEEE--S-
T ss_pred CCccccC--CCeEecCCEEEEEEECCC--ccceEEEEEEeCCcccccccCCCCEEeeeeecC-----C-CCEEEEECCCC
Confidence 9999997 999999999999998542 357999999999999999999999999999542 2 47899999999
Q ss_pred CCcCCCcceEEEEEc-CCcCCccEEEEe
Q 042303 492 GVITPPGYYLLYVVY-KGVPSPGMWFQI 518 (519)
Q Consensus 492 ~~~~ppG~ymlf~~~-~gvPS~a~~v~i 518 (519)
++|+|||||||||++ +||||+|+||+|
T Consensus 71 ~~vaPPG~YmLFvv~~~GvPS~a~wV~v 98 (98)
T PF09118_consen 71 PNVAPPGYYMLFVVNDDGVPSVAKWVQV 98 (98)
T ss_dssp TTTS-SEEEEEEEEETTS-B---EEEEE
T ss_pred CccCCCcCEEEEEEcCCCcccccEEEEC
Confidence 999999999999999 999999999997
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-31 Score=293.39 Aligned_cols=255 Identities=13% Similarity=0.117 Sum_probs=189.8
Q ss_pred eEEEecCCCC-CCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcEEEEcCCCC-----CceEEe-CCCCCCCCc
Q 042303 81 HLVGTGGYQG-GANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGA-----FSYEYI-PPQGQSNKQ 153 (519)
Q Consensus 81 ~llv~GG~~~-g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~-----~~~E~y-P~~~~w~~~ 153 (519)
.+++.||... ....+++|||. +++|..+++ |+.+|.+++++++ +|+|||+||.+. .++|+| |.+++|..
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~-~~~W~~l~~-mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~- 334 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNIN-TMEYSVIST-IPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE- 334 (557)
T ss_pred EEEEecCccccCCCCEEEEeCC-CCeEEECCC-CCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEee-
Confidence 4555555321 12468999999 899999986 9999999998888 999999999741 468999 99999952
Q ss_pred ccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCC-------ceEEeeCCCCeEEEEccCCCCCCCc
Q 042303 154 SIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNN-------RSILFDPKANRVIREYPVLTGGSRN 226 (519)
Q Consensus 154 ~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~-------~~~~yDp~t~~w~~~~p~~p~~~r~ 226 (519)
..||...+.. ++.+..+|+||++||. ++++|||.+|+|. .+++||. +|.
T Consensus 335 --~~~m~~~R~~--------------------~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~~~~mp~-~r~ 390 (557)
T PHA02713 335 --LPPMIKNRCR--------------------FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK-MLPDMPI-ALS 390 (557)
T ss_pred --CCCCcchhhc--------------------eeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-ECCCCCc-ccc
Confidence 3445432211 3567789999999995 3789999999997 6999985 443
Q ss_pred cCCCCcEEecccccccCCccccCCeEEEEcCCCCCc-ccccc-cc----cccccCCCceEEEEecCCCCceEec-cCCcc
Q 042303 227 YPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDA-FYYAE-DK----KQFWPALQDCGRIRITEPNPVWKKE-MMPTR 299 (519)
Q Consensus 227 ~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~-~~~~~-~~----~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~ 299 (519)
. .+++++ +++||++||.+... +.... .+ ......++++++|||. +++|+.. +|+.+
T Consensus 391 ~--~~~~~~-------------~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m~~~ 453 (557)
T PHA02713 391 S--YGMCVL-------------DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNFWTG 453 (557)
T ss_pred c--ccEEEE-------------CCEEEEEeCCCcccccccccccccccccccccccceEEEECCC--CCeEeecCCCCcc
Confidence 2 233333 89999999975210 00000 00 0001125789999998 7999999 99999
Q ss_pred eeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCC-CCcceeeecCCCCcCCccceeeeEcCCCcEEEecC
Q 042303 300 RVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKE-KRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGS 378 (519)
Q Consensus 300 R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t-~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG 378 (519)
|..++++++ +|+|||+||... . ..-...+|+|||++ + +|+.+++|+.+|..++++++ ||+|||+||
T Consensus 454 r~~~~~~~~-~~~IYv~GG~~~-~------~~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 454 TIRPGVVSH-KDDIYVVCDIKD-E------KNVKTCIFRYNTNTYN---GWELITTTESRLSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccCcEEEE-CCEEEEEeCCCC-C------CccceeEEEecCCCCC---CeeEccccCcccccceeEEE--CCEEEEEee
Confidence 999986655 999999999752 1 11123579999999 9 99999999999999999988 999999999
Q ss_pred CCCCCCccCCCCCceeeEEEEcCCCC
Q 042303 379 NTHDGYKFDHKYPTELRVEKFSPPYL 404 (519)
Q Consensus 379 ~~~~~~~~~~~~p~~~~vEiy~Ppyl 404 (519)
..+. ..+|+|+|..-
T Consensus 521 ~~~~-----------~~~e~yd~~~~ 535 (557)
T PHA02713 521 YESY-----------MLQDTFNVYTY 535 (557)
T ss_pred ecce-----------eehhhcCcccc
Confidence 7541 26899998774
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=9.3e-30 Score=263.41 Aligned_cols=250 Identities=14% Similarity=0.159 Sum_probs=176.6
Q ss_pred CCeeccCCeEEEecCCCCCCceEEEEeC--CCCCccccCCCCCC-CccccceEEEcCCCcEEEEcCCCC----------C
Q 042303 73 SGGLTVDGHLVGTGGYQGGANTVRYLWT--CDTCDWIEYPTALA-EPRWYSTQVTLPDGGFIVVGGRGA----------F 139 (519)
Q Consensus 73 ~~~~l~dG~llv~GG~~~g~~~v~~ydp--~~~~~W~~~~~~m~-~~R~y~s~~~L~dG~V~viGG~~~----------~ 139 (519)
+++++.+++|||+||.. .+.+.+||+ . +++|.++++ |+ .+|.+++++++ |++|||+||... .
T Consensus 11 ~~~~~~~~~vyv~GG~~--~~~~~~~d~~~~-~~~W~~l~~-~p~~~R~~~~~~~~-~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSA--GTSWYKLDLKKP-SKGWQKIAD-FPGGPRNQAVAAAI-DGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred ceEEEECCEEEEEcccc--CCeeEEEECCCC-CCCceECCC-CCCCCcccceEEEE-CCEEEEEeCCCCCCCCCcceecc
Confidence 44667799999999974 367889996 4 688999986 98 58999988888 999999999742 3
Q ss_pred ceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEE-eeCCcEEEEeCC----------------
Q 042303 140 SYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNL-VTDGNLFIFSNN---------------- 201 (519)
Q Consensus 140 ~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~-~~~G~Ifv~Gg~---------------- 201 (519)
.+|+| |.+++|... ..++ .+.+ +.++.+ +.+|+||++||.
T Consensus 86 ~v~~Yd~~~~~W~~~--~~~~--p~~~------------------~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 143 (346)
T TIGR03547 86 DVYRYDPKKNSWQKL--DTRS--PVGL------------------LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAAD 143 (346)
T ss_pred cEEEEECCCCEEecC--CCCC--CCcc------------------cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcC
Confidence 58999 999999631 1122 1111 112333 679999999984
Q ss_pred -------------------------ceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEc
Q 042303 202 -------------------------RSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCG 256 (519)
Q Consensus 202 -------------------------~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~G 256 (519)
++++|||.+++|. .+++||..+|.. ++.++ .+++||++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~-~~~~~p~~~r~~--~~~~~-------------~~~~iyv~G 207 (346)
T TIGR03547 144 KDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWR-NLGENPFLGTAG--SAIVH-------------KGNKLLLIN 207 (346)
T ss_pred ccchhhhhhHHHHhCCChhHcCccceEEEEECCCCcee-ECccCCCCcCCC--ceEEE-------------ECCEEEEEe
Confidence 3689999999998 689887433421 22222 389999999
Q ss_pred CCCCCcccccccccccccCCCceEEEEecCCCCceEec-cCCccee-------eceeEEecCCcEEEEcCcCCCCC----
Q 042303 257 GAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRRV-------MGDMTILPTGDVLLVNGAQNGTS---- 324 (519)
Q Consensus 257 G~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~-------~~~~vvLpdG~V~viGG~~~g~~---- 324 (519)
|..... ..+..+++||+....++|+.. +|+.+|. .+.+ +..+|+|||+||......
T Consensus 208 G~~~~~-----------~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a-~~~~~~Iyv~GG~~~~~~~~~~ 275 (346)
T TIGR03547 208 GEIKPG-----------LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFA-GISNGVLLVAGGANFPGAQENY 275 (346)
T ss_pred eeeCCC-----------ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEee-eEECCEEEEeecCCCCCchhhh
Confidence 975211 012345567764336799998 9988763 3333 445999999999752100
Q ss_pred --C--c-cCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeeeEcCCCcEEEecCCCCC
Q 042303 325 --A--W-NDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNTHD 382 (519)
Q Consensus 325 --g--~-~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~ 382 (519)
+ + ......+.++|+|||+++ +|+.+++|+.+|.+|+++++ +|+|||.||....
T Consensus 276 ~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~~~~~~~~~~--~~~iyv~GG~~~~ 333 (346)
T TIGR03547 276 KNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKLPQGLAYGVSVSW--NNGVLLIGGENSG 333 (346)
T ss_pred hcCCccccCCCCceeEeeEEEecCC---cccccCCCCCCceeeEEEEc--CCEEEEEeccCCC
Confidence 0 0 000112346899999999 99999999999998876666 9999999997543
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=6.5e-28 Score=252.46 Aligned_cols=278 Identities=16% Similarity=0.172 Sum_probs=184.9
Q ss_pred EECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCC-CCccccCCCCCC-CccccceEEEcCCCcEEEEcCCCC
Q 042303 61 KPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCD-TCDWIEYPTALA-EPRWYSTQVTLPDGGFIVVGGRGA 138 (519)
Q Consensus 61 ~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~-~~~W~~~~~~m~-~~R~y~s~~~L~dG~V~viGG~~~ 138 (519)
+.++.++..+-..+++..+++|||+||.. .+.+..||... +++|.++++ |+ .+|..++++++ +++|||+||...
T Consensus 20 ~~l~~lP~~~~~~~~~~~~~~iyv~gG~~--~~~~~~~d~~~~~~~W~~l~~-~p~~~r~~~~~v~~-~~~IYV~GG~~~ 95 (376)
T PRK14131 20 EQLPDLPVPFKNGTGAIDNNTVYVGLGSA--GTSWYKLDLNAPSKGWTKIAA-FPGGPREQAVAAFI-DGKLYVFGGIGK 95 (376)
T ss_pred ccCCCCCcCccCCeEEEECCEEEEEeCCC--CCeEEEEECCCCCCCeEECCc-CCCCCcccceEEEE-CCEEEEEcCCCC
Confidence 44455554433334566799999999964 34678898752 478999985 87 58988888888 999999999753
Q ss_pred ----------CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCC------
Q 042303 139 ----------FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNN------ 201 (519)
Q Consensus 139 ----------~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~------ 201 (519)
..+++| |.+++|.. ++.+..... ..+.++++.+++||++||.
T Consensus 96 ~~~~~~~~~~~~v~~YD~~~n~W~~----~~~~~p~~~-----------------~~~~~~~~~~~~IYv~GG~~~~~~~ 154 (376)
T PRK14131 96 TNSEGSPQVFDDVYKYDPKTNSWQK----LDTRSPVGL-----------------AGHVAVSLHNGKAYITGGVNKNIFD 154 (376)
T ss_pred CCCCCceeEcccEEEEeCCCCEEEe----CCCCCCCcc-----------------cceEEEEeeCCEEEEECCCCHHHHH
Confidence 357889 99999963 121101100 0112233379999999994
Q ss_pred -----------------------------------ceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCcc
Q 042303 202 -----------------------------------RSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQK 246 (519)
Q Consensus 202 -----------------------------------~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~ 246 (519)
++++|||.+|+|. .+++||..+|. +.++.
T Consensus 155 ~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~-~~~~~p~~~~~----~~a~v----------- 218 (376)
T PRK14131 155 GYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWK-NAGESPFLGTA----GSAVV----------- 218 (376)
T ss_pred HHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeee-ECCcCCCCCCC----cceEE-----------
Confidence 3689999999997 58888742332 33322
Q ss_pred ccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCceEec-cCCcceee-------ceeEEecCCcEEEEcC
Q 042303 247 IIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRRVM-------GDMTILPTGDVLLVNG 318 (519)
Q Consensus 247 ~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~-------~~~vvLpdG~V~viGG 318 (519)
..+++||++||...... ....+..+++....++|+.. +|+.+|.. +.++++.+|+|||+||
T Consensus 219 ~~~~~iYv~GG~~~~~~-----------~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 219 IKGNKLWLINGEIKPGL-----------RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred EECCEEEEEeeeECCCc-----------CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeec
Confidence 13899999999642110 11223333332226899998 99988742 1223456999999999
Q ss_pred cCCCCC------C--c-cCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeeeEcCCCcEEEecCCCCCCCccCCC
Q 042303 319 AQNGTS------A--W-NDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNTHDGYKFDHK 389 (519)
Q Consensus 319 ~~~g~~------g--~-~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~~~~~~~ 389 (519)
...... + + ......+..+|+|||+++ +|+.+++|+.+|.+|+++++ +|+|||.||......
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~r~~~~av~~--~~~iyv~GG~~~~~~----- 357 (376)
T PRK14131 288 ANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGELPQGLAYGVSVSW--NNGVLLIGGETAGGK----- 357 (376)
T ss_pred cCCCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcCCCCccceEEEEe--CCEEEEEcCCCCCCc-----
Confidence 753110 0 0 000112346899999999 99999999999999987666 999999999754321
Q ss_pred CCceeeEEEEcCC
Q 042303 390 YPTELRVEKFSPP 402 (519)
Q Consensus 390 ~p~~~~vEiy~Pp 402 (519)
...++++|.|.
T Consensus 358 --~~~~v~~~~~~ 368 (376)
T PRK14131 358 --AVSDVTLLSWD 368 (376)
T ss_pred --EeeeEEEEEEc
Confidence 13478888765
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=4.4e-28 Score=261.19 Aligned_cols=218 Identities=16% Similarity=0.234 Sum_probs=172.8
Q ss_pred EECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCC--CCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcE
Q 042303 53 FDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQG--GANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGF 130 (519)
Q Consensus 53 yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~--g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V 130 (519)
|++.+++|..+. ..| .++..++.||++||... ..+++++|||. +++|..+++ |+.+|.+++++++ ||+|
T Consensus 251 ~~~~~~~~~~~~----~~~--~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~-~~~W~~~~~-m~~~r~~~~~v~~-~~~i 321 (480)
T PHA02790 251 YPMNMDQIIDIF----HMC--TSTHVGEVVYLIGGWMNNEIHNNAIAVNYI-SNNWIPIPP-MNSPRLYASGVPA-NNKL 321 (480)
T ss_pred cCCcccceeecc----CCc--ceEEECCEEEEEcCCCCCCcCCeEEEEECC-CCEEEECCC-CCchhhcceEEEE-CCEE
Confidence 556777777632 122 23447889999999753 34689999999 899999996 9999999999888 9999
Q ss_pred EEEcCCCCCceEEeCCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCceEEeeCCC
Q 042303 131 IVVGGRGAFSYEYIPPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNRSILFDPKA 210 (519)
Q Consensus 131 ~viGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~~~~yDp~t 210 (519)
|++||.+.. .++++|||.+
T Consensus 322 YviGG~~~~-------------------------------------------------------------~sve~ydp~~ 340 (480)
T PHA02790 322 YVVGGLPNP-------------------------------------------------------------TSVERWFHGD 340 (480)
T ss_pred EEECCcCCC-------------------------------------------------------------CceEEEECCC
Confidence 999995310 0246799999
Q ss_pred CeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCc
Q 042303 211 NRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPV 290 (519)
Q Consensus 211 ~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~ 290 (519)
|+|. .+|+||. +|.. .+++++ +++||++||.+. . .+++++|||. +++
T Consensus 341 n~W~-~~~~l~~-~r~~--~~~~~~-------------~g~IYviGG~~~-~-------------~~~ve~ydp~--~~~ 387 (480)
T PHA02790 341 AAWV-NMPSLLK-PRCN--PAVASI-------------NNVIYVIGGHSE-T-------------DTTTEYLLPN--HDQ 387 (480)
T ss_pred CeEE-ECCCCCC-CCcc--cEEEEE-------------CCEEEEecCcCC-C-------------CccEEEEeCC--CCE
Confidence 9997 6999984 5542 233332 899999999751 1 2578999998 799
Q ss_pred eEec-cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeeeEcC
Q 042303 291 WKKE-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLP 369 (519)
Q Consensus 291 W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~Llp 369 (519)
|+.. +|+.+|..+++++ .+|+|||+||. +|+|||+++ +|+.+++|+.+|..|+++++
T Consensus 388 W~~~~~m~~~r~~~~~~~-~~~~IYv~GG~----------------~e~ydp~~~---~W~~~~~m~~~r~~~~~~v~-- 445 (480)
T PHA02790 388 WQFGPSTYYPHYKSCALV-FGRRLFLVGRN----------------AEFYCESSN---TWTLIDDPIYPRDNPELIIV-- 445 (480)
T ss_pred EEeCCCCCCccccceEEE-ECCEEEEECCc----------------eEEecCCCC---cEeEcCCCCCCccccEEEEE--
Confidence 9999 9999999998665 59999999973 389999999 99999999999999998887
Q ss_pred CCcEEEecCCCCCCCccCCCCCceeeEEEEcCCC
Q 042303 370 DGKVLIAGSNTHDGYKFDHKYPTELRVEKFSPPY 403 (519)
Q Consensus 370 dG~V~v~GG~~~~~~~~~~~~p~~~~vEiy~Ppy 403 (519)
+|+|||.||.....+ ...+|+|+|..
T Consensus 446 ~~~IYviGG~~~~~~--------~~~ve~Yd~~~ 471 (480)
T PHA02790 446 DNKLLLIGGFYRGSY--------IDTIEVYNNRT 471 (480)
T ss_pred CCEEEEECCcCCCcc--------cceEEEEECCC
Confidence 999999999753321 23799999975
No 11
>PLN02153 epithiospecifier protein
Probab=99.96 E-value=1.9e-26 Score=238.28 Aligned_cols=281 Identities=12% Similarity=0.106 Sum_probs=187.1
Q ss_pred CCCCcEEECcc----CCCcccCCCeeccCCeEEEecCCCCC----CceEEEEeCCCCCccccCCCCCC-Cccc---cceE
Q 042303 55 IETAKLKPLKI----QTDTWCSSGGLTVDGHLVGTGGYQGG----ANTVRYLWTCDTCDWIEYPTALA-EPRW---YSTQ 122 (519)
Q Consensus 55 p~t~~w~~l~~----~~~~~c~~~~~l~dG~llv~GG~~~g----~~~v~~ydp~~~~~W~~~~~~m~-~~R~---y~s~ 122 (519)
|...+|+.+.. ++..++..+++..+++|||+||.... .+.+++||+. +++|+.++. |. .+|. .+++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~W~~~~~-~~~~p~~~~~~~~~ 81 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFN-THTWSIAPA-NGDVPRISCLGVRM 81 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECC-CCEEEEcCc-cCCCCCCccCceEE
Confidence 35677988865 44556666677789999999997421 3579999999 899998875 53 4443 4667
Q ss_pred EEcCCCcEEEEcCCCC----CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEE
Q 042303 123 VTLPDGGFIVVGGRGA----FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFI 197 (519)
Q Consensus 123 ~~L~dG~V~viGG~~~----~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv 197 (519)
+++ +++|||+||... ..+++| |.+++|.. ..++.... . +...+-+..++.+++||+
T Consensus 82 ~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~---~~~~~~~~-~--------------p~~R~~~~~~~~~~~iyv 142 (341)
T PLN02153 82 VAV-GTKLYIFGGRDEKREFSDFYSYDTVKNEWTF---LTKLDEEG-G--------------PEARTFHSMASDENHVYV 142 (341)
T ss_pred EEE-CCEEEEECCCCCCCccCcEEEEECCCCEEEE---eccCCCCC-C--------------CCCceeeEEEEECCEEEE
Confidence 777 899999999753 368899 99999952 11220000 0 000011355678999999
Q ss_pred EeCC-------------ceEEeeCCCCeEEEEccCCCC--CCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCc
Q 042303 198 FSNN-------------RSILFDPKANRVIREYPVLTG--GSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDA 262 (519)
Q Consensus 198 ~Gg~-------------~~~~yDp~t~~w~~~~p~~p~--~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~ 262 (519)
+||. +.++||+++++|. .++++.. .+|.. ++.++ .+++||++||... .
T Consensus 143 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~l~~~~~~~~~r~~--~~~~~-------------~~~~iyv~GG~~~-~ 205 (341)
T PLN02153 143 FGGVSKGGLMKTPERFRTIEAYNIADGKWV-QLPDPGENFEKRGG--AGFAV-------------VQGKIWVVYGFAT-S 205 (341)
T ss_pred ECCccCCCccCCCcccceEEEEECCCCeEe-eCCCCCCCCCCCCc--ceEEE-------------ECCeEEEEecccc-c
Confidence 9994 2578999999997 5876631 12321 12222 2899999999742 1
Q ss_pred ccccccccccccCCCceEEEEecCCCCceEec-c---CCcceeeceeEEecCCcEEEEcCcCCCC-CCccCCCCCccccE
Q 042303 263 FYYAEDKKQFWPALQDCGRIRITEPNPVWKKE-M---MPTRRVMGDMTILPTGDVLLVNGAQNGT-SAWNDAEEPALAPA 337 (519)
Q Consensus 263 ~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~---M~~~R~~~~~vvLpdG~V~viGG~~~g~-~g~~~~~~~~~~~e 337 (519)
... .+.....++.+++||+. +++|+.. . ||.+|..+++++ .+++|||+||..... .+..........++
T Consensus 206 ~~~---gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~ 279 (341)
T PLN02153 206 ILP---GGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGY 279 (341)
T ss_pred ccc---CCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEE
Confidence 000 00001124678999998 7999986 3 788999888655 599999999964210 00000011123689
Q ss_pred EEeCCCCCcceeeecC-----CCCcCCccceeeeEcCCCcEEEecCCCCC
Q 042303 338 LYKTKEKRHHRFQELA-----PTTIPRMYHSVSVLLPDGKVLIAGSNTHD 382 (519)
Q Consensus 338 ~YdP~t~~g~~W~~~~-----~~~~~R~yhs~a~LlpdG~V~v~GG~~~~ 382 (519)
+|||+++ +|+.+. +++..|.+|+++++.-+++||+.||....
T Consensus 280 ~~d~~~~---~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 280 ALDTETL---VWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred EEEcCcc---EEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC
Confidence 9999999 999885 56666666667766556799999998554
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=1.3e-26 Score=237.77 Aligned_cols=251 Identities=14% Similarity=0.190 Sum_probs=173.7
Q ss_pred eeccCCeEEEecCCCCC------------CceEEEEe-CCCCCccccCCCCCCCccccceEEEcCCCcEEEEcCCCC---
Q 042303 75 GLTVDGHLVGTGGYQGG------------ANTVRYLW-TCDTCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGA--- 138 (519)
Q Consensus 75 ~~l~dG~llv~GG~~~g------------~~~v~~yd-p~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~--- 138 (519)
+...++.|+|+||.+.. .+.+.+|+ +..+-+|.++++ |+.+|.+++++++ +++||++||.+.
T Consensus 9 ~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~-lp~~r~~~~~~~~-~~~lyviGG~~~~~~ 86 (323)
T TIGR03548 9 AGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ-LPYEAAYGASVSV-ENGIYYIGGSNSSER 86 (323)
T ss_pred eeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc-CCccccceEEEEE-CCEEEEEcCCCCCCC
Confidence 45568899999997521 12455554 431237999885 9999988888887 899999999764
Q ss_pred -CceEEe-CCCCCCCCccccc-ccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCC-------ceEEeeC
Q 042303 139 -FSYEYI-PPQGQSNKQSIYL-PLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNN-------RSILFDP 208 (519)
Q Consensus 139 -~~~E~y-P~~~~w~~~~~~~-p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~-------~~~~yDp 208 (519)
..++.| +.+++|...|... ++..... -++.++.+++||++||. +.++||+
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~--------------------~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFE--------------------NGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCcc--------------------CceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 467888 8888773222222 2321111 13556789999999995 4789999
Q ss_pred CCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCC
Q 042303 209 KANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPN 288 (519)
Q Consensus 209 ~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~ 288 (519)
++++|. .+++||..+|.. .+++. .+++||++||.+. . ...++++||+. +
T Consensus 147 ~~~~W~-~~~~~p~~~r~~---~~~~~------------~~~~iYv~GG~~~-~------------~~~~~~~yd~~--~ 195 (323)
T TIGR03548 147 ETQEWF-ELPDFPGEPRVQ---PVCVK------------LQNELYVFGGGSN-I------------AYTDGYKYSPK--K 195 (323)
T ss_pred CCCCee-ECCCCCCCCCCc---ceEEE------------ECCEEEEEcCCCC-c------------cccceEEEecC--C
Confidence 999997 688887544542 22222 3899999999752 1 12356899998 7
Q ss_pred CceEec-cCC---ccee--eceeEEecCCcEEEEcCcCCCCC-----Ccc-------------------CCCCCccccEE
Q 042303 289 PVWKKE-MMP---TRRV--MGDMTILPTGDVLLVNGAQNGTS-----AWN-------------------DAEEPALAPAL 338 (519)
Q Consensus 289 ~~W~~~-~M~---~~R~--~~~~vvLpdG~V~viGG~~~g~~-----g~~-------------------~~~~~~~~~e~ 338 (519)
++|+.. +|+ .+|. .+.++++.+++|||+||.+.... .+. ....-..++|+
T Consensus 196 ~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 275 (323)
T TIGR03548 196 NQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILI 275 (323)
T ss_pred CeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEE
Confidence 899988 774 3433 34445566899999999752100 000 00001236899
Q ss_pred EeCCCCCcceeeecCCCC-cCCccceeeeEcCCCcEEEecCCCCCC
Q 042303 339 YKTKEKRHHRFQELAPTT-IPRMYHSVSVLLPDGKVLIAGSNTHDG 383 (519)
Q Consensus 339 YdP~t~~g~~W~~~~~~~-~~R~yhs~a~LlpdG~V~v~GG~~~~~ 383 (519)
|||.++ +|+.+++++ .+|..|+++++ |++||+.||+...+
T Consensus 276 yd~~~~---~W~~~~~~p~~~r~~~~~~~~--~~~iyv~GG~~~pg 316 (323)
T TIGR03548 276 YNVRTG---KWKSIGNSPFFARCGAALLLT--GNNIFSINGELKPG 316 (323)
T ss_pred EECCCC---eeeEcccccccccCchheEEE--CCEEEEEeccccCC
Confidence 999999 999999887 58998888777 99999999975443
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=5.3e-26 Score=245.00 Aligned_cols=207 Identities=14% Similarity=0.214 Sum_probs=164.6
Q ss_pred CCEEEEEecccccccCcCCCCCCCCccccCCCCCCCccceeEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCC
Q 042303 9 VNQVLMYDATVWKISKIPLPQEKMPCRVIDPKTNEVDCWAHSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGY 88 (519)
Q Consensus 9 ~g~vl~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~ 88 (519)
+++|+++||.+.. . .....+.|||.+++|..++.++..++..+++..||+||++||.
T Consensus 271 ~~~lyviGG~~~~--------~---------------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~ 327 (480)
T PHA02790 271 GEVVYLIGGWMNN--------E---------------IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGL 327 (480)
T ss_pred CCEEEEEcCCCCC--------C---------------cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCc
Confidence 7899999986421 0 1245679999999999999988888777788889999999997
Q ss_pred CCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcEEEEcCCCCCceEEeCCCCCCCCcccccccchhcccccc
Q 042303 89 QGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGAFSYEYIPPQGQSNKQSIYLPLLRETHDQLA 168 (519)
Q Consensus 89 ~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~ 168 (519)
. +.++++.|||. +++|..+++ |+.+|..++++++ +|+|||+||.+.. .
T Consensus 328 ~-~~~sve~ydp~-~n~W~~~~~-l~~~r~~~~~~~~-~g~IYviGG~~~~----------------------~------ 375 (480)
T PHA02790 328 P-NPTSVERWFHG-DAAWVNMPS-LLKPRCNPAVASI-NNVIYVIGGHSET----------------------D------ 375 (480)
T ss_pred C-CCCceEEEECC-CCeEEECCC-CCCCCcccEEEEE-CCEEEEecCcCCC----------------------C------
Confidence 5 34679999999 899999986 9999999999998 9999999995310 0
Q ss_pred CCcccccccccccCccceEEEeeCCcEEEEeCCceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCcccc
Q 042303 169 GHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNRSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKII 248 (519)
Q Consensus 169 g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~ 248 (519)
..+++|||.+++|. .+++|+. +|.. ++++++
T Consensus 376 --------------------------------~~ve~ydp~~~~W~-~~~~m~~-~r~~--~~~~~~------------- 406 (480)
T PHA02790 376 --------------------------------TTTEYLLPNHDQWQ-FGPSTYY-PHYK--SCALVF------------- 406 (480)
T ss_pred --------------------------------ccEEEEeCCCCEEE-eCCCCCC-cccc--ceEEEE-------------
Confidence 02468999999997 6999874 4542 233332
Q ss_pred CCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCceEec-cCCcceeeceeEEecCCcEEEEcCcCCCCCCcc
Q 042303 249 HSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWN 327 (519)
Q Consensus 249 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~ 327 (519)
+++||++||. +++|||. +++|+.. +|+.+|..++++++ +|+|||+||.+.+
T Consensus 407 ~~~IYv~GG~--------------------~e~ydp~--~~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~----- 458 (480)
T PHA02790 407 GRRLFLVGRN--------------------AEFYCES--SNTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRG----- 458 (480)
T ss_pred CCEEEEECCc--------------------eEEecCC--CCcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCC-----
Confidence 8999999973 3579987 7999998 99999999987655 9999999997521
Q ss_pred CCCCCccccEEEeCCCCCcceeeecC
Q 042303 328 DAEEPALAPALYKTKEKRHHRFQELA 353 (519)
Q Consensus 328 ~~~~~~~~~e~YdP~t~~g~~W~~~~ 353 (519)
..+.++|+|||+++ +|+.+.
T Consensus 459 ---~~~~~ve~Yd~~~~---~W~~~~ 478 (480)
T PHA02790 459 ---SYIDTIEVYNNRTY---SWNIWD 478 (480)
T ss_pred ---cccceEEEEECCCC---eEEecC
Confidence 12347899999999 998653
No 14
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=6.4e-26 Score=248.03 Aligned_cols=244 Identities=15% Similarity=0.181 Sum_probs=184.7
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCC---CceEEEEeCCCCCccccCCCCCCCccccceEEEc
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGG---ANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTL 125 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g---~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L 125 (519)
....|++.+++|.++...+...| .+++..+++||++||.... .+.+..||+. +++|..+++ |+.+|.+++++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~-~~~~R~~~~~~~~ 341 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYC-FGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK-TKSWNKVPE-LIYPRKNPGVTVF 341 (534)
T ss_pred eeeecchhhhhcccccCcccccc-ceEEEECCEEEEECCCcCCCCeeccEEEEeCC-CCeeeECCC-CCcccccceEEEE
Confidence 44578999999999876554444 3567789999999998632 3578999999 999999986 9999999999888
Q ss_pred CCCcEEEEcCCCC----CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeC
Q 042303 126 PDGGFIVVGGRGA----FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSN 200 (519)
Q Consensus 126 ~dG~V~viGG~~~----~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg 200 (519)
+|+|||+||.+. .++|+| |.+++|.. ..++...+ +.++.+..+|+||++||
T Consensus 342 -~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~---~~~lp~~r--------------------~~~~~~~~~~~iYv~GG 397 (534)
T PHA03098 342 -NNRIYVIGGIYNSISLNTVESWKPGESKWRE---EPPLIFPR--------------------YNPCVVNVNNLIYVIGG 397 (534)
T ss_pred -CCEEEEEeCCCCCEecceEEEEcCCCCceee---CCCcCcCC--------------------ccceEEEECCEEEEECC
Confidence 999999999863 468999 99999963 22332221 11355678999999999
Q ss_pred C--------ceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCccccccccccc
Q 042303 201 N--------RSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQF 272 (519)
Q Consensus 201 ~--------~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~ 272 (519)
. .+++||+.+++|. .+++||. +|.. ++++. .+++||++||......
T Consensus 398 ~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~-~r~~---~~~~~------------~~~~iyv~GG~~~~~~--------- 451 (534)
T PHA03098 398 ISKNDELLKTVECFSLNTNKWS-KGSPLPI-SHYG---GCAIY------------HDGKIYVIGGISYIDN--------- 451 (534)
T ss_pred cCCCCcccceEEEEeCCCCeee-ecCCCCc-cccC---ceEEE------------ECCEEEEECCccCCCC---------
Confidence 3 4789999999997 6888874 3431 22222 3899999999752110
Q ss_pred ccCCCceEEEEecCCCCceEec-cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeee
Q 042303 273 WPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQE 351 (519)
Q Consensus 273 ~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~ 351 (519)
....+.+++||+. +++|+.. +|+.+|..++++++ +|+|||+||.... .....+|+|||+++ +|+.
T Consensus 452 ~~~~~~v~~yd~~--~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~--------~~~~~v~~yd~~~~---~W~~ 517 (534)
T PHA03098 452 IKVYNIVESYNPV--TNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYE--------YYINEIEVYDDKTN---TWTL 517 (534)
T ss_pred CcccceEEEecCC--CCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCC--------cccceeEEEeCCCC---EEEe
Confidence 0124568999998 7999999 99999999887655 9999999997531 11346899999999 9998
Q ss_pred cCCCCcCC
Q 042303 352 LAPTTIPR 359 (519)
Q Consensus 352 ~~~~~~~R 359 (519)
+..++.-.
T Consensus 518 ~~~~p~~~ 525 (534)
T PHA03098 518 FCKFPKVI 525 (534)
T ss_pred cCCCcccc
Confidence 87765433
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.94 E-value=9.3e-25 Score=226.07 Aligned_cols=248 Identities=14% Similarity=0.109 Sum_probs=169.8
Q ss_pred eeeCCCCEEEEEecccccccCcCCCCCCCCccccCCCCCCCccceeEEEEEC--CCCcEEECccCC-CcccCCCeeccCC
Q 042303 4 ILLPKVNQVLMYDATVWKISKIPLPQEKMPCRVIDPKTNEVDCWAHSVLFDI--ETAKLKPLKIQT-DTWCSSGGLTVDG 80 (519)
Q Consensus 4 ~ll~~~g~vl~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~yDp--~t~~w~~l~~~~-~~~c~~~~~l~dG 80 (519)
+++ +++|++++|... .....||+ .+++|+.++.++ ..++..+++..++
T Consensus 14 ~~~--~~~vyv~GG~~~---------------------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~ 64 (346)
T TIGR03547 14 AII--GDKVYVGLGSAG---------------------------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDG 64 (346)
T ss_pred EEE--CCEEEEEccccC---------------------------CeeEEEECCCCCCCceECCCCCCCCcccceEEEECC
Confidence 355 899999988431 12346775 678999999886 4677778888899
Q ss_pred eEEEecCCCC--------CCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcEEEEcCCCC--------------
Q 042303 81 HLVGTGGYQG--------GANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGA-------------- 138 (519)
Q Consensus 81 ~llv~GG~~~--------g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~-------------- 138 (519)
+|||+||... ..+.+++|||. +++|++++..|+..|..++++++.+|+|||+||.+.
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~-~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 143 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPK-KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAAD 143 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECC-CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcC
Confidence 9999999752 14679999999 999999863366677666666334999999999752
Q ss_pred ------------------------CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCC
Q 042303 139 ------------------------FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDG 193 (519)
Q Consensus 139 ------------------------~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G 193 (519)
.++|+| |.+++|.. ..++.... + +-++++..++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~---~~~~p~~~-r------------------~~~~~~~~~~ 201 (346)
T TIGR03547 144 KDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRN---LGENPFLG-T------------------AGSAIVHKGN 201 (346)
T ss_pred ccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeE---CccCCCCc-C------------------CCceEEEECC
Confidence 468999 99999963 23332111 0 0134667899
Q ss_pred cEEEEeCCc--------eEEe--eCCCCeEEEEccCCCCCCCcc-CC--CCc-EEecccccccCCccccCCeEEEEcCCC
Q 042303 194 NLFIFSNNR--------SILF--DPKANRVIREYPVLTGGSRNY-PA--SGM-SVLLPIKLHAGHQKIIHSDILVCGGAA 259 (519)
Q Consensus 194 ~Ifv~Gg~~--------~~~y--Dp~t~~w~~~~p~~p~~~r~~-~~--~g~-av~l~l~~~~~~~~~~~gkI~v~GG~~ 259 (519)
+||++||.. .++| |+.+++|. .+++||. +|.. +. .+. ++. .+++||++||.+
T Consensus 202 ~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~-~~~~m~~-~r~~~~~~~~~~~a~~------------~~~~Iyv~GG~~ 267 (346)
T TIGR03547 202 KLLLINGEIKPGLRTAEVKQYLFTGGKLEWN-KLPPLPP-PKSSSQEGLAGAFAGI------------SNGVLLVAGGAN 267 (346)
T ss_pred EEEEEeeeeCCCccchheEEEEecCCCceee-ecCCCCC-CCCCccccccEEeeeE------------ECCEEEEeecCC
Confidence 999999952 3445 45778997 6999974 3321 11 121 222 389999999975
Q ss_pred CCccccccc-cccc----ccCCCceEEEEecCCCCceEec-cCCcceeeceeEEecCCcEEEEcCcC
Q 042303 260 WDAFYYAED-KKQF----WPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQ 320 (519)
Q Consensus 260 ~~~~~~~~~-~~~~----~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~ 320 (519)
......... ...+ ...+.++|+||+. +++|+.. +||.+|..+.+ +..+|+|||+||..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~lp~~~~~~~~-~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 268 FPGAQENYKNGKLYAHEGLIKAWSSEVYALD--NGKWSKVGKLPQGLAYGVS-VSWNNGVLLIGGEN 331 (346)
T ss_pred CCCchhhhhcCCccccCCCCceeEeeEEEec--CCcccccCCCCCCceeeEE-EEcCCEEEEEeccC
Confidence 210000000 0000 0123468999997 7899999 99999988775 45599999999985
No 16
>PLN02193 nitrile-specifier protein
Probab=99.93 E-value=6.3e-24 Score=228.36 Aligned_cols=274 Identities=12% Similarity=0.136 Sum_probs=186.0
Q ss_pred EEECCC----CcEEECccC---CCcccCCCeeccCCeEEEecCCCCC----CceEEEEeCCCCCccccCCC--CCCC-cc
Q 042303 52 LFDIET----AKLKPLKIQ---TDTWCSSGGLTVDGHLVGTGGYQGG----ANTVRYLWTCDTCDWIEYPT--ALAE-PR 117 (519)
Q Consensus 52 ~yDp~t----~~w~~l~~~---~~~~c~~~~~l~dG~llv~GG~~~g----~~~v~~ydp~~~~~W~~~~~--~m~~-~R 117 (519)
.+||.+ ++|..+... +..++..+++..+++||++||.... .+.+++||+. +++|+.++. +++. .|
T Consensus 141 ~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~-~~~W~~~~~~g~~P~~~~ 219 (470)
T PLN02193 141 ISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLE-TRTWSISPATGDVPHLSC 219 (470)
T ss_pred EecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECC-CCEEEeCCCCCCCCCCcc
Confidence 457766 899988753 4567877788889999999997421 2468999999 899997653 1333 24
Q ss_pred ccceEEEcCCCcEEEEcCCCC----CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeC
Q 042303 118 WYSTQVTLPDGGFIVVGGRGA----FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTD 192 (519)
Q Consensus 118 ~y~s~~~L~dG~V~viGG~~~----~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~ 192 (519)
..++++++ +++|||+||.+. +.+++| |.+++|.. ..++... +..-+-+..++.+
T Consensus 220 ~~~~~v~~-~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~---l~~~~~~-----------------P~~R~~h~~~~~~ 278 (470)
T PLN02193 220 LGVRMVSI-GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL---LTPVEEG-----------------PTPRSFHSMAADE 278 (470)
T ss_pred cceEEEEE-CCEEEEECCCCCCCCCccEEEEECCCCEEEE---cCcCCCC-----------------CCCccceEEEEEC
Confidence 46677777 999999999764 467889 99999952 2222100 0000113556679
Q ss_pred CcEEEEeCC-------ceEEeeCCCCeEEEEccCCCC--CCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcc
Q 042303 193 GNLFIFSNN-------RSILFDPKANRVIREYPVLTG--GSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAF 263 (519)
Q Consensus 193 G~Ifv~Gg~-------~~~~yDp~t~~w~~~~p~~p~--~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~ 263 (519)
++||++||. +.++||+.+++|. .+++... ..|. ...+++ .+++||++||.+ +.
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~---~~~~~~------------~~gkiyviGG~~-g~- 340 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRG---GAGLEV------------VQGKVWVVYGFN-GC- 340 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCC---CcEEEE------------ECCcEEEEECCC-CC-
Confidence 999999995 3678999999997 4654211 1232 122222 289999999975 21
Q ss_pred cccccccccccCCCceEEEEecCCCCceEec-cC---CcceeeceeEEecCCcEEEEcCcCCCCC-CccCCCCCccccEE
Q 042303 264 YYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MM---PTRRVMGDMTILPTGDVLLVNGAQNGTS-AWNDAEEPALAPAL 338 (519)
Q Consensus 264 ~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M---~~~R~~~~~vvLpdG~V~viGG~~~g~~-g~~~~~~~~~~~e~ 338 (519)
.++.+++||+. +++|+.. +| |.+|..+++++ .+++|||+||...... ...........+++
T Consensus 341 -----------~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 341 -----------EVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred -----------ccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEE
Confidence 14678999998 7899987 54 88999988765 4999999999742100 00000111235899
Q ss_pred EeCCCCCcceeeecCCC------CcCCccceee--eEcCCCcEEEecCCCCC
Q 042303 339 YKTKEKRHHRFQELAPT------TIPRMYHSVS--VLLPDGKVLIAGSNTHD 382 (519)
Q Consensus 339 YdP~t~~g~~W~~~~~~------~~~R~yhs~a--~LlpdG~V~v~GG~~~~ 382 (519)
|||.++ +|+.+..+ +.+|..|+.+ .+..+.++++.||....
T Consensus 407 ~D~~t~---~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 407 LDTETL---QWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred EEcCcC---EEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc
Confidence 999999 99988753 5778877643 33223449999997543
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.93 E-value=1.7e-24 Score=222.15 Aligned_cols=262 Identities=15% Similarity=0.103 Sum_probs=176.2
Q ss_pred eeeeCCCCEEEEEecccccccCcCCCCCCCCccccCCCCCCCccceeEEEE-ECCCC-cEEECccCCCcccCCCeeccCC
Q 042303 3 AILLPKVNQVLMYDATVWKISKIPLPQEKMPCRVIDPKTNEVDCWAHSVLF-DIETA-KLKPLKIQTDTWCSSGGLTVDG 80 (519)
Q Consensus 3 ~~ll~~~g~vl~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~y-Dp~t~-~w~~l~~~~~~~c~~~~~l~dG 80 (519)
++++ +++++++||.++ + +..+.+++ +..++....+| |+..+ +|+.+..++..++.++++..++
T Consensus 9 ~~~~--~~~l~v~GG~~~-~-~~~~~~~g-----------~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~ 73 (323)
T TIGR03548 9 AGII--GDYILVAGGCNF-P-EDPLAEGG-----------KKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVEN 73 (323)
T ss_pred eeEE--CCEEEEeeccCC-C-CCchhhCC-----------cEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECC
Confidence 5677 889999999774 2 21222221 11223333444 45433 7999998887777667777799
Q ss_pred eEEEecCCCCC--CceEEEEeCCCCCcc----ccCCCCCCCccccceEEEcCCCcEEEEcCCCC----CceEEe-CCCCC
Q 042303 81 HLVGTGGYQGG--ANTVRYLWTCDTCDW----IEYPTALAEPRWYSTQVTLPDGGFIVVGGRGA----FSYEYI-PPQGQ 149 (519)
Q Consensus 81 ~llv~GG~~~g--~~~v~~ydp~~~~~W----~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~----~~~E~y-P~~~~ 149 (519)
+||++||.... .+.+++||+. +++| ..+++ |+.+|..++++++ +++|||+||... .++++| |.+++
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~-~~~w~~~~~~~~~-lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLD-ESKEELICETIGN-LPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEc-CCceeeeeeEcCC-CCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 99999997632 4789999998 7777 67775 9999998988887 999999999632 468999 99999
Q ss_pred CCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCc------eEEeeCCCCeEEEEccCCCCC
Q 042303 150 SNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNR------SILFDPKANRVIREYPVLTGG 223 (519)
Q Consensus 150 w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~------~~~yDp~t~~w~~~~p~~p~~ 223 (519)
|.. ..++.... +. .++.+..+++||++||.+ .++|||.+++|. .+++|+..
T Consensus 151 W~~---~~~~p~~~-r~------------------~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~-~~~~~~~~ 207 (323)
T TIGR03548 151 WFE---LPDFPGEP-RV------------------QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ-KVADPTTD 207 (323)
T ss_pred eeE---CCCCCCCC-CC------------------cceEEEECCEEEEEcCCCCccccceEEEecCCCeeE-ECCCCCCC
Confidence 952 22332111 10 124567899999999953 579999999997 58877421
Q ss_pred --CCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCccccc-----ccc--------------ccccc-CCCceEE
Q 042303 224 --SRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYA-----EDK--------------KQFWP-ALQDCGR 281 (519)
Q Consensus 224 --~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~-----~~~--------------~~~~~-a~~s~~~ 281 (519)
++......++++ .+++||++||.+...+... ... ..... -.+++++
T Consensus 208 ~~p~~~~~~~~~~~------------~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 275 (323)
T TIGR03548 208 SEPISLLGAASIKI------------NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILI 275 (323)
T ss_pred CCceeccceeEEEE------------CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEE
Confidence 222111111222 2789999999863111000 000 00000 1357999
Q ss_pred EEecCCCCceEec-cCC-cceeeceeEEecCCcEEEEcCcC
Q 042303 282 IRITEPNPVWKKE-MMP-TRRVMGDMTILPTGDVLLVNGAQ 320 (519)
Q Consensus 282 ~d~~~~~~~W~~~-~M~-~~R~~~~~vvLpdG~V~viGG~~ 320 (519)
||+. +++|+.. +|+ .+|..+++++ .+++||++||..
T Consensus 276 yd~~--~~~W~~~~~~p~~~r~~~~~~~-~~~~iyv~GG~~ 313 (323)
T TIGR03548 276 YNVR--TGKWKSIGNSPFFARCGAALLL-TGNNIFSINGEL 313 (323)
T ss_pred EECC--CCeeeEcccccccccCchheEE-ECCEEEEEeccc
Confidence 9998 7899998 787 5888887655 599999999974
No 18
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=2.1e-24 Score=236.04 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=178.2
Q ss_pred EEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcEEEEcCCCC-----CceEEe-CCCCCCCCccc
Q 042303 82 LVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGA-----FSYEYI-PPQGQSNKQSI 155 (519)
Q Consensus 82 llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~-----~~~E~y-P~~~~w~~~~~ 155 (519)
+++.||..+....+..|++. ..+|..+++ ++..+ .++++++ +++|||+||... ..+..| |.+++|..
T Consensus 253 ~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--- 325 (534)
T PHA03098 253 IYIHITMSIFTYNYITNYSP-LSEINTIID-IHYVY-CFGSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK--- 325 (534)
T ss_pred eEeecccchhhceeeecchh-hhhcccccC-ccccc-cceEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE---
Confidence 44555543223455678887 788988764 55333 3466666 999999999754 357788 99999952
Q ss_pred ccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCC-------ceEEeeCCCCeEEEEccCCCCCCCccC
Q 042303 156 YLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNN-------RSILFDPKANRVIREYPVLTGGSRNYP 228 (519)
Q Consensus 156 ~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~-------~~~~yDp~t~~w~~~~p~~p~~~r~~~ 228 (519)
..++...+. -+..+..+|+||++||. ++++||+.+++|. .+++||. +|..
T Consensus 326 ~~~~~~~R~--------------------~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~lp~-~r~~- 382 (534)
T PHA03098 326 VPELIYPRK--------------------NPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-EEPPLIF-PRYN- 382 (534)
T ss_pred CCCCCcccc--------------------cceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-eCCCcCc-CCcc-
Confidence 222321111 13566779999999995 3789999999997 6898884 4532
Q ss_pred CCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCceEec-cCCcceeeceeEE
Q 042303 229 ASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTI 307 (519)
Q Consensus 229 ~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vv 307 (519)
+++++ .+++||++||...+. ..++++++||+. +++|+.. +||.+|..+++++
T Consensus 383 -~~~~~-------------~~~~iYv~GG~~~~~-----------~~~~~v~~yd~~--t~~W~~~~~~p~~r~~~~~~~ 435 (534)
T PHA03098 383 -PCVVN-------------VNNLIYVIGGISKND-----------ELLKTVECFSLN--TNKWSKGSPLPISHYGGCAIY 435 (534)
T ss_pred -ceEEE-------------ECCEEEEECCcCCCC-----------cccceEEEEeCC--CCeeeecCCCCccccCceEEE
Confidence 22222 389999999965211 125789999998 7899998 9999999988655
Q ss_pred ecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeeeEcCCCcEEEecCCCCCCCccC
Q 042303 308 LPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNTHDGYKFD 387 (519)
Q Consensus 308 LpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~~~~~ 387 (519)
.+++|||+||..... .......+++|||+++ +|+.+++++.+|..|+++++ +|+|||.||.....+
T Consensus 436 -~~~~iyv~GG~~~~~-----~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~--- 501 (534)
T PHA03098 436 -HDGKIYVIGGISYID-----NIKVYNIVESYNPVTN---KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYY--- 501 (534)
T ss_pred -ECCEEEEECCccCCC-----CCcccceEEEecCCCC---ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcc---
Confidence 599999999975211 1111335899999999 99999999999999988776 999999999765432
Q ss_pred CCCCceeeEEEEcCCCC
Q 042303 388 HKYPTELRVEKFSPPYL 404 (519)
Q Consensus 388 ~~~p~~~~vEiy~Ppyl 404 (519)
...+|+|+|.--
T Consensus 502 -----~~~v~~yd~~~~ 513 (534)
T PHA03098 502 -----INEIEVYDDKTN 513 (534)
T ss_pred -----cceeEEEeCCCC
Confidence 237999998864
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.93 E-value=3.5e-24 Score=224.29 Aligned_cols=250 Identities=16% Similarity=0.127 Sum_probs=170.5
Q ss_pred EEEECC--CCcEEECccCC-CcccCCCeeccCCeEEEecCCCC----C----CceEEEEeCCCCCccccCCCCCCCcccc
Q 042303 51 VLFDIE--TAKLKPLKIQT-DTWCSSGGLTVDGHLVGTGGYQG----G----ANTVRYLWTCDTCDWIEYPTALAEPRWY 119 (519)
Q Consensus 51 ~~yDp~--t~~w~~l~~~~-~~~c~~~~~l~dG~llv~GG~~~----g----~~~v~~ydp~~~~~W~~~~~~m~~~R~y 119 (519)
..||+. +++|+.++.++ ..++..+++..+++|||+||... + .+.+++|||. +++|..++..++.+|..
T Consensus 53 ~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~-~n~W~~~~~~~p~~~~~ 131 (376)
T PRK14131 53 YKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK-TNSWQKLDTRSPVGLAG 131 (376)
T ss_pred EEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC-CCEEEeCCCCCCCcccc
Confidence 467765 58999998775 35666677788999999999753 1 3679999999 89999987424667777
Q ss_pred ceEEEcCCCcEEEEcCCCC--------------------------------------CceEEe-CCCCCCCCcccccccc
Q 042303 120 STQVTLPDGGFIVVGGRGA--------------------------------------FSYEYI-PPQGQSNKQSIYLPLL 160 (519)
Q Consensus 120 ~s~~~L~dG~V~viGG~~~--------------------------------------~~~E~y-P~~~~w~~~~~~~p~l 160 (519)
++++++.|++|||+||.+. ..+++| |.+++|.. ..++.
T Consensus 132 ~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~---~~~~p 208 (376)
T PRK14131 132 HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKN---AGESP 208 (376)
T ss_pred eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeE---CCcCC
Confidence 7777745999999999642 358899 99999963 22232
Q ss_pred hhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCc------e----EEeeCCCCeEEEEccCCCCCCCcc--C
Q 042303 161 RETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNR------S----ILFDPKANRVIREYPVLTGGSRNY--P 228 (519)
Q Consensus 161 ~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~------~----~~yDp~t~~w~~~~p~~p~~~r~~--~ 228 (519)
.... ..++++..+++||++||.. . ..||+++++|. .+++||. +|.. +
T Consensus 209 ~~~~-------------------~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~-~~~~~~~ 267 (376)
T PRK14131 209 FLGT-------------------AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ-KLPDLPP-APGGSSQ 267 (376)
T ss_pred CCCC-------------------CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCccee-ecCCCCC-CCcCCcC
Confidence 1110 1135667799999999842 2 24588999997 6888874 3321 1
Q ss_pred C--CCc-EEecccccccCCccccCCeEEEEcCCCCCccccccc-ccc-----cccCCCceEEEEecCCCCceEec-cCCc
Q 042303 229 A--SGM-SVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAED-KKQ-----FWPALQDCGRIRITEPNPVWKKE-MMPT 298 (519)
Q Consensus 229 ~--~g~-av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~-~~~-----~~~a~~s~~~~d~~~~~~~W~~~-~M~~ 298 (519)
. .+. +++ .+++||++||.+... ..... ++. ......++|+||+. +++|+.. +||.
T Consensus 268 ~~~~~~~a~~------------~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~lp~ 332 (376)
T PRK14131 268 EGVAGAFAGY------------SNGVLLVAGGANFPG-ARENYQNGKLYAHEGLKKSWSDEIYALV--NGKWQKVGELPQ 332 (376)
T ss_pred CccceEecee------------ECCEEEEeeccCCCC-ChhhhhcCCcccccCCcceeehheEEec--CCcccccCcCCC
Confidence 1 111 222 289999999975211 00000 000 00112357899998 7899998 9999
Q ss_pred ceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeee
Q 042303 299 RRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQE 351 (519)
Q Consensus 299 ~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~ 351 (519)
+|.++.++ ..+|+|||+||...+ ...+..+++|+++.+ +++.
T Consensus 333 ~r~~~~av-~~~~~iyv~GG~~~~-------~~~~~~v~~~~~~~~---~~~~ 374 (376)
T PRK14131 333 GLAYGVSV-SWNNGVLLIGGETAG-------GKAVSDVTLLSWDGK---KLTV 374 (376)
T ss_pred CccceEEE-EeCCEEEEEcCCCCC-------CcEeeeEEEEEEcCC---EEEE
Confidence 99998754 459999999997531 123557899999987 6653
No 20
>PLN02193 nitrile-specifier protein
Probab=99.92 E-value=2.4e-23 Score=223.93 Aligned_cols=261 Identities=13% Similarity=0.131 Sum_probs=181.9
Q ss_pred ccCCeEEEecCCCCC-Cce--EEEEeCCC---CCccccCCC--CCCCccccceEEEcCCCcEEEEcCCCC------CceE
Q 042303 77 TVDGHLVGTGGYQGG-ANT--VRYLWTCD---TCDWIEYPT--ALAEPRWYSTQVTLPDGGFIVVGGRGA------FSYE 142 (519)
Q Consensus 77 l~dG~llv~GG~~~g-~~~--v~~ydp~~---~~~W~~~~~--~m~~~R~y~s~~~L~dG~V~viGG~~~------~~~E 142 (519)
+.+++|+.++|.... ..+ +.+++|.. .++|..+.+ +++.+|..|+++++ +++|||+||... ..++
T Consensus 118 ~~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~-~~~iyv~GG~~~~~~~~~~~v~ 196 (470)
T PLN02193 118 LQGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQV-GNKIYSFGGEFTPNQPIDKHLY 196 (470)
T ss_pred EcCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEE-CCEEEEECCcCCCCCCeeCcEE
Confidence 458899999997532 333 44557751 278998764 36789999999988 899999999742 3478
Q ss_pred Ee-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCC-------ceEEeeCCCCeEE
Q 042303 143 YI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNN-------RSILFDPKANRVI 214 (519)
Q Consensus 143 ~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~-------~~~~yDp~t~~w~ 214 (519)
+| +.+++|.. .+....... ....-++.+..+++||++||. +.++||+.+++|.
T Consensus 197 ~yD~~~~~W~~----~~~~g~~P~---------------~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~ 257 (470)
T PLN02193 197 VFDLETRTWSI----SPATGDVPH---------------LSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWK 257 (470)
T ss_pred EEECCCCEEEe----CCCCCCCCC---------------CcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEE
Confidence 89 99998952 111100000 000113456789999999994 4789999999997
Q ss_pred EEccCCCC--CCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCceE
Q 042303 215 REYPVLTG--GSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWK 292 (519)
Q Consensus 215 ~~~p~~p~--~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~ 292 (519)
.+++|.. .+|.+ .++++ .+++||++||.+.. ..++.+++||+. +++|+
T Consensus 258 -~l~~~~~~P~~R~~---h~~~~------------~~~~iYv~GG~~~~------------~~~~~~~~yd~~--t~~W~ 307 (470)
T PLN02193 258 -LLTPVEEGPTPRSF---HSMAA------------DEENVYVFGGVSAT------------ARLKTLDSYNIV--DKKWF 307 (470)
T ss_pred -EcCcCCCCCCCccc---eEEEE------------ECCEEEEECCCCCC------------CCcceEEEEECC--CCEEE
Confidence 5877732 14432 22222 38999999998621 124678899998 78999
Q ss_pred ec-c---CCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCC---CcCCccceee
Q 042303 293 KE-M---MPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPT---TIPRMYHSVS 365 (519)
Q Consensus 293 ~~-~---M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~---~~~R~yhs~a 365 (519)
.. . |+.+|..+.+++ .+|+|||+||.. +. ....+++|||+++ +|+.+.++ +.+|..|+++
T Consensus 308 ~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~-g~--------~~~dv~~yD~~t~---~W~~~~~~g~~P~~R~~~~~~ 374 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFN-GC--------EVDDVHYYDPVQD---KWTQVETFGVRPSERSVFASA 374 (470)
T ss_pred eCCCCCCCCCCCCCcEEEE-ECCcEEEEECCC-CC--------ccCceEEEECCCC---EEEEeccCCCCCCCcceeEEE
Confidence 76 3 778899888655 599999999974 21 1346899999999 99998765 8899999988
Q ss_pred eEcCCCcEEEecCCCCCCCc-c--CCCCCceeeEEEEcCCCC
Q 042303 366 VLLPDGKVLIAGSNTHDGYK-F--DHKYPTELRVEKFSPPYL 404 (519)
Q Consensus 366 ~LlpdG~V~v~GG~~~~~~~-~--~~~~p~~~~vEiy~Ppyl 404 (519)
++ +++|||.||....... . ...+ ..++++|+|...
T Consensus 375 ~~--~~~iyv~GG~~~~~~~~~~~~~~~--~ndv~~~D~~t~ 412 (470)
T PLN02193 375 AV--GKHIVIFGGEIAMDPLAHVGPGQL--TDGTFALDTETL 412 (470)
T ss_pred EE--CCEEEEECCccCCccccccCccce--eccEEEEEcCcC
Confidence 77 9999999997432110 0 0000 236899999875
No 21
>PLN02153 epithiospecifier protein
Probab=99.92 E-value=5e-23 Score=212.84 Aligned_cols=265 Identities=17% Similarity=0.201 Sum_probs=172.0
Q ss_pred eeeeeCCCCEEEEEecccccccCcCCCCCCCCccccCCCCCCCccceeEEEEECCCCcEEECccCCC---ccc-CCCeec
Q 042303 2 HAILLPKVNQVLMYDATVWKISKIPLPQEKMPCRVIDPKTNEVDCWAHSVLFDIETAKLKPLKIQTD---TWC-SSGGLT 77 (519)
Q Consensus 2 h~~ll~~~g~vl~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~---~~c-~~~~~l 77 (519)
|.++. -+++|+++||.... +. . .......||+.+++|+.++.+.. ..| ..+++.
T Consensus 26 h~~~~-~~~~iyv~GG~~~~-------~~--~------------~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 26 HGIAV-VGDKLYSFGGELKP-------NE--H------------IDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ceEEE-ECCEEEEECCccCC-------CC--c------------eeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 55555 58999999986411 00 0 11346789999999998876532 233 334567
Q ss_pred cCCeEEEecCCCCC--CceEEEEeCCCCCccccCCCCC-----CCccccceEEEcCCCcEEEEcCCCC----------Cc
Q 042303 78 VDGHLVGTGGYQGG--ANTVRYLWTCDTCDWIEYPTAL-----AEPRWYSTQVTLPDGGFIVVGGRGA----------FS 140 (519)
Q Consensus 78 ~dG~llv~GG~~~g--~~~v~~ydp~~~~~W~~~~~~m-----~~~R~y~s~~~L~dG~V~viGG~~~----------~~ 140 (519)
.+++||++||.... .+.+++||+. +++|++++. | +.+|..|+++++ +++|||+||... .+
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~-~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTV-KNEWTFLTK-LDEEGGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECC-CCEEEEecc-CCCCCCCCCceeeEEEEE-CCEEEEECCccCCCccCCCcccce
Confidence 79999999997532 4689999999 899998875 7 778999988887 999999999742 25
Q ss_pred eEEe-CCCCCCCCcccccccchh--ccccccCCcccccccccccCccceEEEeeCCcEEEEeCC---------------c
Q 042303 141 YEYI-PPQGQSNKQSIYLPLLRE--THDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNN---------------R 202 (519)
Q Consensus 141 ~E~y-P~~~~w~~~~~~~p~l~~--t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~---------------~ 202 (519)
+++| |++++|.. ++.+.. ..+. -+.+++.+|+||++||. +
T Consensus 161 v~~yd~~~~~W~~----l~~~~~~~~~r~------------------~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~ 218 (341)
T PLN02153 161 IEAYNIADGKWVQ----LPDPGENFEKRG------------------GAGFAVVQGKIWVVYGFATSILPGGKSDYESNA 218 (341)
T ss_pred EEEEECCCCeEee----CCCCCCCCCCCC------------------cceEEEECCeEEEEeccccccccCCccceecCc
Confidence 7889 99999952 221110 0000 12456689999999862 3
Q ss_pred eEEeeCCCCeEEEEccC---CCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCce
Q 042303 203 SILFDPKANRVIREYPV---LTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDC 279 (519)
Q Consensus 203 ~~~yDp~t~~w~~~~p~---~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~ 279 (519)
+++||+.+++|+ .++. +|. +|.. ++ +++ .+++||++||.....-... .+ ....++.+
T Consensus 219 v~~yd~~~~~W~-~~~~~g~~P~-~r~~--~~-~~~------------~~~~iyv~GG~~~~~~~~~--~~-~~~~~n~v 278 (341)
T PLN02153 219 VQFFDPASGKWT-EVETTGAKPS-ARSV--FA-HAV------------VGKYIIIFGGEVWPDLKGH--LG-PGTLSNEG 278 (341)
T ss_pred eEEEEcCCCcEE-eccccCCCCC-Ccce--ee-eEE------------ECCEEEEECcccCCccccc--cc-cccccccE
Confidence 688999999998 4654 332 3431 22 232 2899999999631100000 00 00124578
Q ss_pred EEEEecCCCCceEec------cCCcceeeceeE-EecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCC
Q 042303 280 GRIRITEPNPVWKKE------MMPTRRVMGDMT-ILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTK 342 (519)
Q Consensus 280 ~~~d~~~~~~~W~~~------~M~~~R~~~~~v-vLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~ 342 (519)
++||+. +++|+.. +||.+|..++++ +.-+++||++||...+ .+.+..+.+|+..
T Consensus 279 ~~~d~~--~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~-------~~~~~~~~~~~~~ 339 (341)
T PLN02153 279 YALDTE--TLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT-------NERTDDLYFYAVN 339 (341)
T ss_pred EEEEcC--ccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC-------CccccceEEEecc
Confidence 999987 7899864 455555433333 3334589999998532 1234456777654
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.74 E-value=2.5e-16 Score=150.07 Aligned_cols=259 Identities=16% Similarity=0.206 Sum_probs=167.8
Q ss_pred ccCCCeeccCCeEEEecCCCCCC-------ceEEEEeCCCCCccccCCCC------------CCCccccceEEEcCCCcE
Q 042303 70 WCSSGGLTVDGHLVGTGGYQGGA-------NTVRYLWTCDTCDWIEYPTA------------LAEPRWYSTQVTLPDGGF 130 (519)
Q Consensus 70 ~c~~~~~l~dG~llv~GG~~~g~-------~~v~~ydp~~~~~W~~~~~~------------m~~~R~y~s~~~L~dG~V 130 (519)
+-..+++-...+||-+||+-.|. -.+.+++.. +-+|+.+++. .+..|..|+++.. ++++
T Consensus 14 RVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~-~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y-~d~~ 91 (392)
T KOG4693|consen 14 RVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAE-NYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY-QDKA 91 (392)
T ss_pred cccceeeeecceEEecCCcccccccccCCcceeEEeecc-ceeEEecCcccccccccCCCCccchhhcCceEEEE-cceE
Confidence 33444555567999999986441 267788887 7889887641 2356888887776 9999
Q ss_pred EEEcCCCC-----CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCC---
Q 042303 131 IVVGGRGA-----FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNN--- 201 (519)
Q Consensus 131 ~viGG~~~-----~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~--- 201 (519)
||-||++. +..-.| |++++|.. +.+.-++...+|. +..++.+..+|+|||.
T Consensus 92 yvWGGRND~egaCN~Ly~fDp~t~~W~~-p~v~G~vPgaRDG-------------------HsAcV~gn~MyiFGGye~~ 151 (392)
T KOG4693|consen 92 YVWGGRNDDEGACNLLYEFDPETNVWKK-PEVEGFVPGARDG-------------------HSACVWGNQMYIFGGYEED 151 (392)
T ss_pred EEEcCccCcccccceeeeeccccccccc-cceeeecCCccCC-------------------ceeeEECcEEEEecChHHH
Confidence 99999975 233345 99999953 2222222222221 3456778999999995
Q ss_pred ------ceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccC
Q 042303 202 ------RSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPA 275 (519)
Q Consensus 202 ------~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a 275 (519)
+...+|..|-+|. .+-..- .+-.+....+++++ ++..||+||..+...... .....-
T Consensus 152 a~~FS~d~h~ld~~TmtWr-~~~Tkg-~PprwRDFH~a~~~------------~~~MYiFGGR~D~~gpfH---s~~e~Y 214 (392)
T KOG4693|consen 152 AQRFSQDTHVLDFATMTWR-EMHTKG-DPPRWRDFHTASVI------------DGMMYIFGGRSDESGPFH---SIHEQY 214 (392)
T ss_pred HHhhhccceeEeccceeee-ehhccC-CCchhhhhhhhhhc------------cceEEEeccccccCCCcc---chhhhh
Confidence 2457899999996 453321 11122223445543 799999999753110000 000011
Q ss_pred CCceEEEEecCCCCceEec----cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeee
Q 042303 276 LQDCGRIRITEPNPVWKKE----MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQE 351 (519)
Q Consensus 276 ~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~ 351 (519)
.+....+|.. +..|... -.|..|..|++-+. ||++|++||.. |.- +.......+|||++. .|+.
T Consensus 215 c~~i~~ld~~--T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYn-g~l-----n~HfndLy~FdP~t~---~W~~ 282 (392)
T KOG4693|consen 215 CDTIMALDLA--TGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYN-GTL-----NVHFNDLYCFDPKTS---MWSV 282 (392)
T ss_pred cceeEEEecc--ccccccCCCCCcCCCcccccceEEE-cceEEEecccc-hhh-----hhhhcceeecccccc---hhee
Confidence 1233345655 7889863 35788999997654 99999999985 221 112225689999999 9987
Q ss_pred cC---CCCcCCccceeeeEcCCCcEEEecCCCC
Q 042303 352 LA---PTTIPRMYHSVSVLLPDGKVLIAGSNTH 381 (519)
Q Consensus 352 ~~---~~~~~R~yhs~a~LlpdG~V~v~GG~~~ 381 (519)
+. .-+.+|..|++.+. ++|||+.||-..
T Consensus 283 I~~~Gk~P~aRRRqC~~v~--g~kv~LFGGTsP 313 (392)
T KOG4693|consen 283 ISVRGKYPSARRRQCSVVS--GGKVYLFGGTSP 313 (392)
T ss_pred eeccCCCCCcccceeEEEE--CCEEEEecCCCC
Confidence 65 45778888877666 999999999744
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.66 E-value=4.1e-15 Score=141.84 Aligned_cols=248 Identities=15% Similarity=0.187 Sum_probs=166.4
Q ss_pred eeeeeCCCCEEEEEecccccccCcCCCCCCCCccccCCCCCCCccceeEEEEECCCCcEEECccC-------------CC
Q 042303 2 HAILLPKVNQVLMYDATVWKISKIPLPQEKMPCRVIDPKTNEVDCWAHSVLFDIETAKLKPLKIQ-------------TD 68 (519)
Q Consensus 2 h~~ll~~~g~vl~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~-------------~~ 68 (519)
||++- -..+|+.|||.-.|. - |+.++ ....-.++-.+-.|+.++.. +-
T Consensus 17 HAava-VG~riYSFGGYCsGe----------d--y~~~~------piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPy 77 (392)
T KOG4693|consen 17 HAAVA-VGSRIYSFGGYCSGE----------D--YDAKD------PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPY 77 (392)
T ss_pred ceeee-ecceEEecCCccccc----------c--cccCC------cceeEEeeccceeEEecCcccccccccCCCCccch
Confidence 77776 678899998865432 1 11111 12345788888899988752 12
Q ss_pred cccCCCeeccCCeEEEecCCCC--C-CceEEEEeCCCCCccccCC--CCCCCccccceEEEcCCCcEEEEcCCCC----C
Q 042303 69 TWCSSGGLTVDGHLVGTGGYQG--G-ANTVRYLWTCDTCDWIEYP--TALAEPRWYSTQVTLPDGGFIVVGGRGA----F 139 (519)
Q Consensus 69 ~~c~~~~~l~dG~llv~GG~~~--g-~~~v~~ydp~~~~~W~~~~--~~m~~~R~y~s~~~L~dG~V~viGG~~~----~ 139 (519)
.+....+++.++++|+-||.++ + .+....|||. ++.|.... .-++-+|-.|++|++ ++..||.||..+ .
T Consensus 78 qRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~-t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~F 155 (392)
T KOG4693|consen 78 QRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPE-TNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQRF 155 (392)
T ss_pred hhcCceEEEEcceEEEEcCccCcccccceeeeeccc-cccccccceeeecCCccCCceeeEE-CcEEEEecChHHHHHhh
Confidence 3566677888999999999875 3 3677899999 99997532 237788999999999 889999999753 2
Q ss_pred ceE--Ee-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCc--------------
Q 042303 140 SYE--YI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNR-------------- 202 (519)
Q Consensus 140 ~~E--~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~-------------- 202 (519)
+-+ .+ -.+-+|.. + .|. |.-..||+ | +...+.++++|+|||+.
T Consensus 156 S~d~h~ld~~TmtWr~----~----~Tk-------g~PprwRD----F-H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc 215 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWRE----M----HTK-------GDPPRWRD----F-HTASVIDGMMYIFGGRSDESGPFHSIHEQYC 215 (392)
T ss_pred hccceeEeccceeeee----h----hcc-------CCCchhhh----h-hhhhhccceEEEeccccccCCCccchhhhhc
Confidence 222 22 44555631 1 111 01112321 1 24566789999999962
Q ss_pred --eEEeeCCCCeEEEEccC---CCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCC
Q 042303 203 --SILFDPKANRVIREYPV---LTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQ 277 (519)
Q Consensus 203 --~~~yDp~t~~w~~~~p~---~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~ 277 (519)
...+|.+|..|.+. |+ .|+++|. .++-. +++++|++||.+ +.-. ...+
T Consensus 216 ~~i~~ld~~T~aW~r~-p~~~~~P~GRRS----HS~fv------------Yng~~Y~FGGYn-g~ln---------~Hfn 268 (392)
T KOG4693|consen 216 DTIMALDLATGAWTRT-PENTMKPGGRRS----HSTFV------------YNGKMYMFGGYN-GTLN---------VHFN 268 (392)
T ss_pred ceeEEEeccccccccC-CCCCcCCCcccc----cceEE------------EcceEEEecccc-hhhh---------hhhc
Confidence 34689999999853 33 3444442 33332 599999999986 2211 1245
Q ss_pred ceEEEEecCCCCceEec----cCCcceeeceeEEecCCcEEEEcCcC
Q 042303 278 DCGRIRITEPNPVWKKE----MMPTRRVMGDMTILPTGDVLLVNGAQ 320 (519)
Q Consensus 278 s~~~~d~~~~~~~W~~~----~M~~~R~~~~~vvLpdG~V~viGG~~ 320 (519)
...++||. +..|... .-|.+|..+++++. ++|||++||..
T Consensus 269 dLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~-g~kv~LFGGTs 312 (392)
T KOG4693|consen 269 DLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVS-GGKVYLFGGTS 312 (392)
T ss_pred ceeecccc--cchheeeeccCCCCCcccceeEEEE-CCEEEEecCCC
Confidence 67789887 7889865 56788888887665 99999999975
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.39 E-value=3.7e-11 Score=129.65 Aligned_cols=245 Identities=17% Similarity=0.237 Sum_probs=165.5
Q ss_pred ccCCCeeccCCeEEEecCCCCC--Cc--eEEEEeCCCCCccccCCC--CCCCccccceEEEcCCCcEEEEcCCCC-----
Q 042303 70 WCSSGGLTVDGHLVGTGGYQGG--AN--TVRYLWTCDTCDWIEYPT--ALAEPRWYSTQVTLPDGGFIVVGGRGA----- 138 (519)
Q Consensus 70 ~c~~~~~l~dG~llv~GG~~~g--~~--~v~~ydp~~~~~W~~~~~--~m~~~R~y~s~~~L~dG~V~viGG~~~----- 138 (519)
+...++++.+.+++|+||...+ .. ++++||-. +..|..... .-+.+|..++++++ +.++|++||.+.
T Consensus 61 R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~-~~~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~~~~~~~~ 138 (482)
T KOG0379|consen 61 RAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLE-SQLWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGTDKKYRNL 138 (482)
T ss_pred hhccceeEECCEEEEECCCCCCCccccceeEEeecC-CcccccccccCCCCCcccceeEEEE-CCeEEEEccccCCCCCh
Confidence 4455566669999999997632 22 58999988 788976542 35678999998888 899999999874
Q ss_pred CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCC--------ceEEeeCC
Q 042303 139 FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNN--------RSILFDPK 209 (519)
Q Consensus 139 ~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~--------~~~~yDp~ 209 (519)
..+-.| +.+++|.- ..+ +.+. +-...-|.+++.+.+||++||. +.++||..
T Consensus 139 ~~l~~~d~~t~~W~~---l~~----~~~~-------------P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~ 198 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSL---LSP----TGDP-------------PPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE 198 (482)
T ss_pred hheEeccCCCCcEEE---ecC----cCCC-------------CCCcccceEEEECCEEEEECCccCcccceeeeeeeccc
Confidence 234556 88888841 111 1110 0111124677788999999994 47899999
Q ss_pred CCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCC
Q 042303 210 ANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNP 289 (519)
Q Consensus 210 t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~ 289 (519)
+.+|.+ +... +. ..-|..+.+.. ..+.+++++||...+. -.++++.++|+. +-
T Consensus 199 ~~~W~~-~~~~-g~-~P~pR~gH~~~-----------~~~~~~~v~gG~~~~~-----------~~l~D~~~ldl~--~~ 251 (482)
T KOG0379|consen 199 TSTWSE-LDTQ-GE-APSPRYGHAMV-----------VVGNKLLVFGGGDDGD-----------VYLNDVHILDLS--TW 251 (482)
T ss_pred ccccee-cccC-CC-CCCCCCCceEE-----------EECCeEEEEeccccCC-----------ceecceEeeecc--cc
Confidence 999974 4322 11 11122333322 1388999999876222 136788999988 68
Q ss_pred ceEec----cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCC----CcCCcc
Q 042303 290 VWKKE----MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPT----TIPRMY 361 (519)
Q Consensus 290 ~W~~~----~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~----~~~R~y 361 (519)
+|... .+|.+|..|..+ ..+.+++++||...+. ..+......||.++. .|+.+... +.+|.-
T Consensus 252 ~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~------~~~l~~~~~l~~~~~---~w~~~~~~~~~~~~~~~~ 321 (482)
T KOG0379|consen 252 EWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPK------QEPLGDLYGLDLETL---VWSKVESVGVVRPSPRLG 321 (482)
T ss_pred eeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccc------ccccccccccccccc---ceeeeecccccccccccc
Confidence 89853 689999999987 5589999999986420 114456778898988 88766543 577888
Q ss_pred ceeeeEcCCCcE
Q 042303 362 HSVSVLLPDGKV 373 (519)
Q Consensus 362 hs~a~LlpdG~V 373 (519)
|...+.-..+..
T Consensus 322 ~~~~~~~~~~~~ 333 (482)
T KOG0379|consen 322 HAAELIDELGKD 333 (482)
T ss_pred ccceeeccCCcc
Confidence 877666444444
No 25
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.36 E-value=4.4e-11 Score=129.06 Aligned_cols=208 Identities=18% Similarity=0.232 Sum_probs=140.6
Q ss_pred CCCCccccceEEEcCCCcEEEEcCCCCC----ceEEe---CCCCCCCCcccccccchhccccccCCcccccccccccCcc
Q 042303 112 ALAEPRWYSTQVTLPDGGFIVVGGRGAF----SYEYI---PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLY 184 (519)
Q Consensus 112 ~m~~~R~y~s~~~L~dG~V~viGG~~~~----~~E~y---P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~y 184 (519)
..+.+|+.|+++.. ++++||.||.... ..++| -....|.. +.. +.+. +..-|
T Consensus 56 ~~p~~R~~hs~~~~-~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~-----~~~--~g~~-------------p~~r~ 114 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLI-GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTK-----PAA--TGDE-------------PSPRY 114 (482)
T ss_pred CCcchhhccceeEE-CCEEEEECCCCCCCccccceeEEeecCCccccc-----ccc--cCCC-------------CCccc
Confidence 36678999998887 9999999997541 11344 33344531 111 0000 11112
Q ss_pred ceEEEeeCCcEEEEeCCc--------eEEeeCCCCeEEEEccCCCC--CCCccCCCCcEEecccccccCCccccCCeEEE
Q 042303 185 PFVNLVTDGNLFIFSNNR--------SILFDPKANRVIREYPVLTG--GSRNYPASGMSVLLPIKLHAGHQKIIHSDILV 254 (519)
Q Consensus 185 p~~~~~~~G~Ifv~Gg~~--------~~~yDp~t~~w~~~~p~~p~--~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v 254 (519)
-+..+..+.+||+|||.. ...||+.+++|.. +.+... .+|. ..++++ .+.+|||
T Consensus 115 g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~-l~~~~~~P~~r~---~Hs~~~------------~g~~l~v 178 (482)
T KOG0379|consen 115 GHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSL-LSPTGDPPPPRA---GHSATV------------VGTKLVV 178 (482)
T ss_pred ceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEE-ecCcCCCCCCcc---cceEEE------------ECCEEEE
Confidence 245666789999999964 5689999999974 433221 1232 222332 3799999
Q ss_pred EcCCCCCcccccccccccccCCCceEEEEecCCCCceEec----cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCC
Q 042303 255 CGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE----MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAE 330 (519)
Q Consensus 255 ~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~ 330 (519)
+||.+... ..++++.+||+. +.+|... .-|.||..|++++ .++++|++||...+.
T Consensus 179 fGG~~~~~-----------~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~-~~~~~~v~gG~~~~~------- 237 (482)
T KOG0379|consen 179 FGGIGGTG-----------DSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVV-VGNKLLVFGGGDDGD------- 237 (482)
T ss_pred ECCccCcc-----------cceeeeeeeccc--cccceecccCCCCCCCCCCceEEE-ECCeEEEEeccccCC-------
Confidence 99986311 136789999998 6789864 6788999999765 499999999975221
Q ss_pred CCccccEEEeCCCCCcceeeecC---CCCcCCccceeeeEcCCCcEEEecCCCCC
Q 042303 331 EPALAPALYKTKEKRHHRFQELA---PTTIPRMYHSVSVLLPDGKVLIAGSNTHD 382 (519)
Q Consensus 331 ~~~~~~e~YdP~t~~g~~W~~~~---~~~~~R~yhs~a~LlpdG~V~v~GG~~~~ 382 (519)
.....+.++|-.+- +|..+. ..+.+|++|+.++. ..++++.||....
T Consensus 238 ~~l~D~~~ldl~~~---~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 238 VYLNDVHILDLSTW---EWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP 287 (482)
T ss_pred ceecceEeeecccc---eeeeccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence 12335789999998 998654 56899999998855 7888888887664
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.12 E-value=2.2e-09 Score=108.53 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=148.1
Q ss_pred CeEEEecCCC-CC-----CceEEEEeCCCCCccccCCC-CCCCccccceEEEcCCCcEEEEcCCCCCceEEeCCCCCCCC
Q 042303 80 GHLVGTGGYQ-GG-----ANTVRYLWTCDTCDWIEYPT-ALAEPRWYSTQVTLPDGGFIVVGGRGAFSYEYIPPQGQSNK 152 (519)
Q Consensus 80 G~llv~GG~~-~g-----~~~v~~ydp~~~~~W~~~~~-~m~~~R~y~s~~~L~dG~V~viGG~~~~~~E~yP~~~~w~~ 152 (519)
..|+++||.. +| .+....|+.. +++|..+.. .-+.+|..|.+++.+.|.+++.||.... |...
T Consensus 79 eELilfGGEf~ngqkT~vYndLy~Yn~k-~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS-----Pnq~---- 148 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLYSYNTK-KNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS-----PNQE---- 148 (521)
T ss_pred ceeEEecceeecceeEEEeeeeeEEecc-ccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC-----cchh----
Confidence 4899999954 33 2567789988 899987642 3567899999999998999999995310 2211
Q ss_pred cccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCceEEeeCCCCeEEEEccCCCCCCCccCCCCc
Q 042303 153 QSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNRSILFDPKANRVIREYPVLTGGSRNYPASGM 232 (519)
Q Consensus 153 ~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~ 232 (519)
.+ +-| .+.|.||.++++|++ +.. ++++ .|.+|.
T Consensus 149 -----qF----------------------~HY----------------kD~W~fd~~trkweq-l~~-~g~P--S~RSGH 181 (521)
T KOG1230|consen 149 -----QF----------------------HHY----------------KDLWLFDLKTRKWEQ-LEF-GGGP--SPRSGH 181 (521)
T ss_pred -----hh----------------------hhh----------------hheeeeeeccchhee-ecc-CCCC--CCCccc
Confidence 11 111 245788999999985 532 2221 123454
Q ss_pred EEecccccccCCccccCCeEEEEcCCCC--CcccccccccccccCCCceEEEEecCCCCceEec--c--CCcceeeceeE
Q 042303 233 SVLLPIKLHAGHQKIIHSDILVCGGAAW--DAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE--M--MPTRRVMGDMT 306 (519)
Q Consensus 233 av~l~l~~~~~~~~~~~gkI~v~GG~~~--~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~--~--M~~~R~~~~~v 306 (519)
-.+ .+..+|+++||..+ ..| .-.+.+.+||+. +=+|+.. + -|.+|..+++.
T Consensus 182 RMv-----------awK~~lilFGGFhd~nr~y----------~YyNDvy~FdLd--tykW~Klepsga~PtpRSGcq~~ 238 (521)
T KOG1230|consen 182 RMV-----------AWKRQLILFGGFHDSNRDY----------IYYNDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFS 238 (521)
T ss_pred eeE-----------EeeeeEEEEcceecCCCce----------EEeeeeEEEecc--ceeeeeccCCCCCCCCCCcceEE
Confidence 322 25889999999752 111 225788899987 6889976 3 48899999999
Q ss_pred EecCCcEEEEcCcCCCCCCccCCCC--CccccEEEeCCCCC--cceeeecCCC---CcCCccceeeeEcCCCcEEEecCC
Q 042303 307 ILPTGDVLLVNGAQNGTSAWNDAEE--PALAPALYKTKEKR--HHRFQELAPT---TIPRMYHSVSVLLPDGKVLIAGSN 379 (519)
Q Consensus 307 vLpdG~V~viGG~~~g~~g~~~~~~--~~~~~e~YdP~t~~--g~~W~~~~~~---~~~R~yhs~a~LlpdG~V~v~GG~ 379 (519)
+.|+|.|+|-||+..-..-- +... ......+-+|+.+. -..|+.+.+. +.||...|+++ -++++-|..||-
T Consensus 239 vtpqg~i~vyGGYsK~~~kK-~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~v-a~n~kal~FGGV 316 (521)
T KOG1230|consen 239 VTPQGGIVVYGGYSKQRVKK-DVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAV-AKNHKALFFGGV 316 (521)
T ss_pred ecCCCcEEEEcchhHhhhhh-hhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEE-ecCCceEEecce
Confidence 99999999999985311100 0011 12234566777732 2368887664 78999999876 489999999995
Q ss_pred CC
Q 042303 380 TH 381 (519)
Q Consensus 380 ~~ 381 (519)
..
T Consensus 317 ~D 318 (521)
T KOG1230|consen 317 CD 318 (521)
T ss_pred ec
Confidence 43
No 27
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.12 E-value=2.1e-09 Score=110.92 Aligned_cols=276 Identities=15% Similarity=0.150 Sum_probs=163.0
Q ss_pred CcEEECccC----CCcccCCCeeccCCeEEEecCCCCC-CceEEEEeCCCCCccccCC--CCCCCccccceEEEcCCCcE
Q 042303 58 AKLKPLKIQ----TDTWCSSGGLTVDGHLVGTGGYQGG-ANTVRYLWTCDTCDWIEYP--TALAEPRWYSTQVTLPDGGF 130 (519)
Q Consensus 58 ~~w~~l~~~----~~~~c~~~~~l~dG~llv~GG~~~g-~~~v~~ydp~~~~~W~~~~--~~m~~~R~y~s~~~L~dG~V 130 (519)
-.|+.+... +..+-..-++..-.-|+|+||-++| ......|+.. +++|..-+ .+.+.+-.-+..+++ ..||
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTa-tnqWf~PavrGDiPpgcAA~Gfvcd-Gtri 94 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTA-TNQWFAPAVRGDIPPGCAAFGFVCD-GTRI 94 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccc-cceeecchhcCCCCCchhhcceEec-CceE
Confidence 357665432 2233333455556788999998877 4688899999 99997432 245555555566665 6799
Q ss_pred EEEcCCCC---CceEEe-CCCCCCCCccccc-ccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCceEE
Q 042303 131 IVVGGRGA---FSYEYI-PPQGQSNKQSIYL-PLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNRSIL 205 (519)
Q Consensus 131 ~viGG~~~---~~~E~y-P~~~~w~~~~~~~-p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~~~~ 205 (519)
|+.||.-+ .+-|.| -...+|.. ..+ |-... .|+. +..---|.|.+...|.|+|||-.-+.
T Consensus 95 lvFGGMvEYGkYsNdLYELQasRWeW--krlkp~~p~-----nG~p--------PCPRlGHSFsl~gnKcYlFGGLaNds 159 (830)
T KOG4152|consen 95 LVFGGMVEYGKYSNDLYELQASRWEW--KRLKPKTPK-----NGPP--------PCPRLGHSFSLVGNKCYLFGGLANDS 159 (830)
T ss_pred EEEccEeeeccccchHHHhhhhhhhH--hhcCCCCCC-----CCCC--------CCCccCceeEEeccEeEEeccccccc
Confidence 99999753 244556 44555631 111 11000 0000 00001146778889999999953333
Q ss_pred eeCCCC--------------------eEEEEc--cCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcc
Q 042303 206 FDPKAN--------------------RVIREY--PVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAF 263 (519)
Q Consensus 206 yDp~t~--------------------~w~~~~--p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~ 263 (519)
=||++| .|...+ ..+|. +|. +..+|.+-- -.+-..|.+|.||.. |.
T Consensus 160 eDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~-pRE---SHTAViY~e------KDs~~skmvvyGGM~-G~- 227 (830)
T KOG4152|consen 160 EDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPP-PRE---SHTAVIYTE------KDSKKSKMVVYGGMS-GC- 227 (830)
T ss_pred cCcccccchhhcceEEEEeccCCceEEEecccccCCCCC-Ccc---cceeEEEEe------ccCCcceEEEEcccc-cc-
Confidence 344433 232111 11221 343 456776521 122367899999986 22
Q ss_pred cccccccccccCCCceEEEEecCCCCceEec----cCCcceeeceeEEecCCcEEEEcCcCC--C----CCCccCCCCCc
Q 042303 264 YYAEDKKQFWPALQDCGRIRITEPNPVWKKE----MMPTRRVMGDMTILPTGDVLLVNGAQN--G----TSAWNDAEEPA 333 (519)
Q Consensus 264 ~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~~vvLpdG~V~viGG~~~--g----~~g~~~~~~~~ 333 (519)
.+.....+|+. +-.|.+. --|.+|..|++++ ..+|+||+||.-- + .+....+-.-.
T Consensus 228 -----------RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSLHsa~~-IGnKMyvfGGWVPl~~~~~~~~~hekEWkCT 293 (830)
T KOG4152|consen 228 -----------RLGDLWTLDLD--TLTWNKPSLSGVAPLPRSLHSATT-IGNKMYVFGGWVPLVMDDVKVATHEKEWKCT 293 (830)
T ss_pred -----------cccceeEEecc--eeecccccccCCCCCCccccccee-ecceeEEecceeeeeccccccccccceeeec
Confidence 25566778876 6789764 3577899999754 5999999999621 0 00000000112
Q ss_pred cccEEEeCCCCCcceeeecC-------CCCcCCccceeeeEcCCCcEEEecCCCC
Q 042303 334 LAPALYKTKEKRHHRFQELA-------PTTIPRMYHSVSVLLPDGKVLIAGSNTH 381 (519)
Q Consensus 334 ~~~e~YdP~t~~g~~W~~~~-------~~~~~R~yhs~a~LlpdG~V~v~GG~~~ 381 (519)
.+.-|+|-++. +|+.+- ..+.+|..|+++.+ +-|+|+=-|.++
T Consensus 294 ssl~clNldt~---~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtRlYiWSGRDG 343 (830)
T KOG4152|consen 294 SSLACLNLDTM---AWETLLMDTLEDNTIPRARAGHCAVAI--GTRLYIWSGRDG 343 (830)
T ss_pred cceeeeeecch---heeeeeeccccccccccccccceeEEe--ccEEEEEeccch
Confidence 25678999999 997642 14567788877766 999999888654
No 28
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=99.12 E-value=1.4e-09 Score=106.13 Aligned_cols=135 Identities=25% Similarity=0.364 Sum_probs=90.3
Q ss_pred eEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEE
Q 042303 203 SILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRI 282 (519)
Q Consensus 203 ~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~ 282 (519)
+..||+.++++. .+... ...+|++.++|+ +|++++.||...+. +.+..|
T Consensus 48 s~~yD~~tn~~r-pl~v~-----td~FCSgg~~L~-----------dG~ll~tGG~~~G~--------------~~ir~~ 96 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQ-----TDTFCSGGAFLP-----------DGRLLQTGGDNDGN--------------KAIRIF 96 (243)
T ss_pred EEEEecCCCcEE-eccCC-----CCCcccCcCCCC-----------CCCEEEeCCCCccc--------------cceEEE
Confidence 458999999975 55421 223456666665 89999999976322 234456
Q ss_pred EecC--CCCceEec--cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCC--cceeeecCCC-
Q 042303 283 RITE--PNPVWKKE--MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKR--HHRFQELAPT- 355 (519)
Q Consensus 283 d~~~--~~~~W~~~--~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~--g~~W~~~~~~- 355 (519)
++.. ....|.+. .|..+|++.+++.|+||+|+|+||... + +.|.|.+.... ...|..+...
T Consensus 97 ~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~----------~--t~E~~P~~~~~~~~~~~~~l~~~~ 164 (243)
T PF07250_consen 97 TPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN----------P--TYEFWPPKGPGPGPVTLPFLSQTS 164 (243)
T ss_pred ecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC----------C--cccccCCccCCCCceeeecchhhh
Confidence 6542 24579876 699999999999999999999999752 1 34666654321 1233333321
Q ss_pred -CcCCccceeeeEcCCCcEEEecCCC
Q 042303 356 -TIPRMYHSVSVLLPDGKVLIAGSNT 380 (519)
Q Consensus 356 -~~~R~yhs~a~LlpdG~V~v~GG~~ 380 (519)
..+..+.--..|||||+|++.+...
T Consensus 165 ~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 165 DTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ccCccccCceEEEcCCCCEEEEEcCC
Confidence 3455555567789999999998753
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=1.1e-08 Score=102.43 Aligned_cols=263 Identities=18% Similarity=0.220 Sum_probs=160.1
Q ss_pred ECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCC-CCccccCCCCCCCccccceEEEcCCCcEEEEcCCCC--
Q 042303 62 PLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCD-TCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGA-- 138 (519)
Q Consensus 62 ~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~-~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~-- 138 (519)
.++.++..+-.+...+.+..+||.=|.. ..+....|..+ ...|++.+.-.-.+|-.+.++++ +|++||.||...
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~--G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~-~~kLyvFgG~Gk~~ 105 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSA--GTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVI-GGKLYVFGGYGKSV 105 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccC--CccceehhhhcCCCCceEcccCCCcccccchheee-CCeEEEeeccccCC
Confidence 3455555566665566655787754422 23334444432 47899998634467877777776 999999999742
Q ss_pred -------CceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCC-cEEEEeCC--------
Q 042303 139 -------FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDG-NLFIFSNN-------- 201 (519)
Q Consensus 139 -------~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G-~Ifv~Gg~-------- 201 (519)
.++-+| |.+|+|..-.+..|... .| +.....++ +|+++||.
T Consensus 106 ~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl------~G----------------~~~~~~~~~~i~f~GGvn~~if~~y 163 (381)
T COG3055 106 SSSPQVFNDAYRYDPSTNSWHKLDTRSPTGL------VG----------------ASTFSLNGTKIYFFGGVNQNIFNGY 163 (381)
T ss_pred CCCceEeeeeEEecCCCChhheecccccccc------cc----------------ceeEecCCceEEEEccccHHhhhhh
Confidence 234467 99999964222333210 01 12334455 99999983
Q ss_pred ---------------------------------ceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCcccc
Q 042303 202 ---------------------------------RSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKII 248 (519)
Q Consensus 202 ---------------------------------~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~ 248 (519)
.+..|||.++.|. .+...| .++.+|++++. -
T Consensus 164 f~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~-~~G~~p----f~~~aGsa~~~-----------~ 227 (381)
T COG3055 164 FEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWR-NLGENP----FYGNAGSAVVI-----------K 227 (381)
T ss_pred HHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhh-hcCcCc----ccCccCcceee-----------c
Confidence 1357999999996 454333 45667888764 2
Q ss_pred CCeEEEEcCCCCCcccccccccccccCCCce--EEEEecCCCCceEec-cCCcceeec-e-----eEEecCCcEEEEcCc
Q 042303 249 HSDILVCGGAAWDAFYYAEDKKQFWPALQDC--GRIRITEPNPVWKKE-MMPTRRVMG-D-----MTILPTGDVLLVNGA 319 (519)
Q Consensus 249 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~--~~~d~~~~~~~W~~~-~M~~~R~~~-~-----~vvLpdG~V~viGG~ 319 (519)
+.+|.++-|--. |.+++. .+++.....-+|... +++.+-... . ..--.+|.++|.||+
T Consensus 228 ~n~~~lInGEiK-------------pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGA 294 (381)
T COG3055 228 GNKLTLINGEIK-------------PGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGA 294 (381)
T ss_pred CCeEEEEcceec-------------CCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCC
Confidence 677888877532 233443 456776556789987 555442211 1 112348999999998
Q ss_pred CCCCC------CccCCCCC---ccccEEEeCCCCCcceeeecCCCCcCCccceeeeEcCCCcEEEecCCCCCC
Q 042303 320 QNGTS------AWNDAEEP---ALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNTHDG 383 (519)
Q Consensus 320 ~~g~~------g~~~~~~~---~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~ 383 (519)
..--+ |...+.+. ...-|+|=-+.+ .|+.+..++.++.|-. + +.-++.||+.||+..++
T Consensus 295 nF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g---~Wk~~GeLp~~l~YG~-s-~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 295 NFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNG---SWKIVGELPQGLAYGV-S-LSYNNKVLLIGGETSGG 362 (381)
T ss_pred CChhHHHHHHhcccccccchhhhhhceEEEEcCC---ceeeecccCCCccceE-E-EecCCcEEEEccccCCC
Confidence 53110 11112211 123344444478 9999999999998863 3 34488999999987654
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.85 E-value=2e-07 Score=93.48 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=133.4
Q ss_pred CCcEEECccCC-CcccCCCeeccCCeEEEecCCCCC-------CceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 57 TAKLKPLKIQT-DTWCSSGGLTVDGHLVGTGGYQGG-------ANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 57 t~~w~~l~~~~-~~~c~~~~~l~dG~llv~GG~~~g-------~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
...|+.+...+ ..+-....+..+|+|+++||.... .+.++.|||. .++|..+....+..--.++++.+.+.
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~-~nsW~kl~t~sP~gl~G~~~~~~~~~ 147 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPS-TNSWHKLDTRSPTGLVGASTFSLNGT 147 (381)
T ss_pred CCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCC-CChhheeccccccccccceeEecCCc
Confidence 45898887665 335555667789999999997531 2578899999 89999875423334446778888555
Q ss_pred cEEEEcCCCC--------------------------------------CceEEe-CCCCCCCCcccccccchhccccccC
Q 042303 129 GFIVVGGRGA--------------------------------------FSYEYI-PPQGQSNKQSIYLPLLRETHDQLAG 169 (519)
Q Consensus 129 ~V~viGG~~~--------------------------------------~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g 169 (519)
+|++.||.+. ..+-.| |.+++|.. .-..|+.. +..
T Consensus 148 ~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~-~G~~pf~~-~aG---- 221 (381)
T COG3055 148 KIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRN-LGENPFYG-NAG---- 221 (381)
T ss_pred eEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhh-cCcCcccC-ccC----
Confidence 9999999641 012346 77777742 01123321 100
Q ss_pred CcccccccccccCccceEEEeeCCcEEEEeCC------c--eEEeeCC--CCeEEEEccCCCCCCCccCCCCcEEecccc
Q 042303 170 HFGTENFYRIENNLYPFVNLVTDGNLFIFSNN------R--SILFDPK--ANRVIREYPVLTGGSRNYPASGMSVLLPIK 239 (519)
Q Consensus 170 ~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~------~--~~~yDp~--t~~w~~~~p~~p~~~r~~~~~g~av~l~l~ 239 (519)
.+++.-+++|.++-|. + ..++|.. .-+|. .++++|.. -....-|.+=-+
T Consensus 222 ----------------sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~-~l~~lp~~-~~~~~eGvAGaf--- 280 (381)
T COG3055 222 ----------------SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWL-KLSDLPAP-IGSNKEGVAGAF--- 280 (381)
T ss_pred ----------------cceeecCCeEEEEcceecCCccccceeEEEeccCceeee-eccCCCCC-CCCCccccceec---
Confidence 1233345556555442 2 3345544 45675 68777642 111112222111
Q ss_pred cccCCccccCCeEEEEcCCCCCcccccccccccc--cC-----CCceEEEEecCCCCceEec-cCCcceeeceeEEecCC
Q 042303 240 LHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFW--PA-----LQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTILPTG 311 (519)
Q Consensus 240 ~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~--~a-----~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG 311 (519)
....++++++.||++......+..++.+- +. .+.+..+| +..|+.. .||+++.++.++ .-++
T Consensus 281 -----~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d----~g~Wk~~GeLp~~l~YG~s~-~~nn 350 (381)
T COG3055 281 -----SGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD----NGSWKIVGELPQGLAYGVSL-SYNN 350 (381)
T ss_pred -----cceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc----CCceeeecccCCCccceEEE-ecCC
Confidence 12348899999998631111111111110 01 12333343 6899999 999999998864 5599
Q ss_pred cEEEEcCcCC
Q 042303 312 DVLLVNGAQN 321 (519)
Q Consensus 312 ~V~viGG~~~ 321 (519)
+||+|||...
T Consensus 351 ~vl~IGGE~~ 360 (381)
T COG3055 351 KVLLIGGETS 360 (381)
T ss_pred cEEEEccccC
Confidence 9999999864
No 31
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.84 E-value=4.8e-08 Score=101.06 Aligned_cols=217 Identities=18% Similarity=0.263 Sum_probs=134.9
Q ss_pred CCCccccceEEEcCCCcEEEEcCCCCC---ceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEE
Q 042303 113 LAEPRWYSTQVTLPDGGFIVVGGRGAF---SYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVN 188 (519)
Q Consensus 113 m~~~R~y~s~~~L~dG~V~viGG~~~~---~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~ 188 (519)
-+.+|..|-++++ .--|.|.||-++. ....| ..+++|. +|-. +.|.-.| .-.|.+
T Consensus 29 vPrpRHGHRAVai-kELiviFGGGNEGiiDELHvYNTatnqWf-----~Pav--rGDiPpg-------------cAA~Gf 87 (830)
T KOG4152|consen 29 VPRPRHGHRAVAI-KELIVIFGGGNEGIIDELHVYNTATNQWF-----APAV--RGDIPPG-------------CAAFGF 87 (830)
T ss_pred CCCccccchheee-eeeEEEecCCcccchhhhhhhccccceee-----cchh--cCCCCCc-------------hhhcce
Confidence 5678999988888 6678888987753 34468 8888883 3322 1111000 012356
Q ss_pred EeeCCcEEEEeCC------ceEEeeCCCCeEE-EEc-cCCCC-CCCccCCCCcEEecccccccCCccccCCeEEEEcCCC
Q 042303 189 LVTDGNLFIFSNN------RSILFDPKANRVI-REY-PVLTG-GSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAA 259 (519)
Q Consensus 189 ~~~~G~Ifv~Gg~------~~~~yDp~t~~w~-~~~-p~~p~-~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~ 259 (519)
+..+.+||+|||- +-++|....-+|. +.+ |..|. ++--+|.-|.+..| +..|-|++||..
T Consensus 88 vcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl-----------~gnKcYlFGGLa 156 (830)
T KOG4152|consen 88 VCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSL-----------VGNKCYLFGGLA 156 (830)
T ss_pred EecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEE-----------eccEeEEecccc
Confidence 6667799999983 2345666555553 123 21111 12234445655443 378999999975
Q ss_pred CCccccccccccccc-CCCceEEEEecCCC--CceEec----cCCcceeeceeEEec-----CCcEEEEcCcCCCCCCcc
Q 042303 260 WDAFYYAEDKKQFWP-ALQDCGRIRITEPN--PVWKKE----MMPTRRVMGDMTILP-----TGDVLLVNGAQNGTSAWN 327 (519)
Q Consensus 260 ~~~~~~~~~~~~~~~-a~~s~~~~d~~~~~--~~W~~~----~M~~~R~~~~~vvLp-----dG~V~viGG~~~g~~g~~ 327 (519)
++... ...+.| -++....+++.... -.|... .+|.+|..|.+|+.. .-|++|.||.. |.
T Consensus 157 NdseD----pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~-G~---- 227 (830)
T KOG4152|consen 157 NDSED----PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS-GC---- 227 (830)
T ss_pred ccccC----cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc-cc----
Confidence 43211 122333 26677777765322 248753 789999999988762 34899999986 22
Q ss_pred CCCCCccccEEEeCCCCCcceeeecC---CCCcCCccceeeeEcCCCcEEEecCC
Q 042303 328 DAEEPALAPALYKTKEKRHHRFQELA---PTTIPRMYHSVSVLLPDGKVLIAGSN 379 (519)
Q Consensus 328 ~~~~~~~~~e~YdP~t~~g~~W~~~~---~~~~~R~yhs~a~LlpdG~V~v~GG~ 379 (519)
.+.....-|-+|- .|+... -.+.||.-||+.++ ..+.||.||-
T Consensus 228 ----RLgDLW~Ldl~Tl---~W~kp~~~G~~PlPRSLHsa~~I--GnKMyvfGGW 273 (830)
T KOG4152|consen 228 ----RLGDLWTLDLDTL---TWNKPSLSGVAPLPRSLHSATTI--GNKMYVFGGW 273 (830)
T ss_pred ----cccceeEEeccee---ecccccccCCCCCCcccccceee--cceeEEecce
Confidence 1223455677777 786532 35678999998877 9999999995
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.83 E-value=7e-09 Score=76.16 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=41.6
Q ss_pred ceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCC
Q 042303 299 RRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPR 359 (519)
Q Consensus 299 ~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R 359 (519)
+|.++++++ .+++|||+||.... ......+|+|||+++ +|+.+++|+.||
T Consensus 1 pR~~~s~v~-~~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVV-VGGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEE-ECCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCCCCCCC
Confidence 588888755 59999999998631 234557899999999 999999999998
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.82 E-value=7e-08 Score=97.90 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=107.2
Q ss_pred CcEEEEeCC-----------ceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCC
Q 042303 193 GNLFIFSNN-----------RSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWD 261 (519)
Q Consensus 193 G~Ifv~Gg~-----------~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~ 261 (519)
..+++|||. +...||.++++|.+...|-+..+|. +..+|..| .+.++++||-...
T Consensus 79 eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRs---shq~va~~-----------s~~l~~fGGEfaS 144 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRS---SHQAVAVP-----------SNILWLFGGEFAS 144 (521)
T ss_pred ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCc---cceeEEec-----------cCeEEEeccccCC
Confidence 378888873 3567999999997533221112454 34445443 5789999995311
Q ss_pred cccccccccccccCCCceEEEEecCCCCceEec---cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEE
Q 042303 262 AFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE---MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPAL 338 (519)
Q Consensus 262 ~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~---~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~ 338 (519)
. +....-.......+|+. +.+|+.. .-|.+|..|-+|+- ..+++++||.......+. -...+.+
T Consensus 145 P------nq~qF~HYkD~W~fd~~--trkweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~----YyNDvy~ 211 (521)
T KOG1230|consen 145 P------NQEQFHHYKDLWLFDLK--TRKWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSNRDYI----YYNDVYA 211 (521)
T ss_pred c------chhhhhhhhheeeeeec--cchheeeccCCCCCCCccceeEEe-eeeEEEEcceecCCCceE----EeeeeEE
Confidence 0 00011223456678877 7999976 57899999998665 899999999864322211 1225789
Q ss_pred EeCCCCCcceeeecCCC---CcCCccceeeeEcCCCcEEEecCCC
Q 042303 339 YKTKEKRHHRFQELAPT---TIPRMYHSVSVLLPDGKVLIAGSNT 380 (519)
Q Consensus 339 YdP~t~~g~~W~~~~~~---~~~R~yhs~a~LlpdG~V~v~GG~~ 380 (519)
||-++= +|+.+.+. +.||..|..++ .|+|.|+|-||..
T Consensus 212 FdLdty---kW~Klepsga~PtpRSGcq~~v-tpqg~i~vyGGYs 252 (521)
T KOG1230|consen 212 FDLDTY---KWSKLEPSGAGPTPRSGCQFSV-TPQGGIVVYGGYS 252 (521)
T ss_pred Eeccce---eeeeccCCCCCCCCCCcceEEe-cCCCcEEEEcchh
Confidence 999999 99988753 78999887765 5999999999974
No 34
>smart00612 Kelch Kelch domain.
Probab=98.45 E-value=2.8e-07 Score=65.94 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=37.8
Q ss_pred cEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeeeE
Q 042303 312 DVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVL 367 (519)
Q Consensus 312 ~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~L 367 (519)
+|||+||... ......+|+|||.++ +|+.+++|+.+|.+|+++++
T Consensus 1 ~iyv~GG~~~--------~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDG--------GQRLKSVEVYDPETN---KWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCC--------CceeeeEEEECCCCC---eEccCCCCCCccccceEEEe
Confidence 5899999742 123457899999999 99999999999999998776
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.41 E-value=2.1e-07 Score=67.16 Aligned_cols=47 Identities=15% Similarity=0.364 Sum_probs=37.6
Q ss_pred ceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCC
Q 042303 299 RRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTT 356 (519)
Q Consensus 299 ~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~ 356 (519)
||..+++++ .+++|||+||... ......++|+|||+++ +|+.+++|+
T Consensus 1 pR~~~~~~~-~~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVV-VGNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPPMP 47 (47)
T ss_dssp -BBSEEEEE-ETTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEEES
T ss_pred CCccCEEEE-ECCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCCCC
Confidence 578888655 4999999999863 1345668999999999 999998875
No 36
>PF13964 Kelch_6: Kelch motif
Probab=98.27 E-value=1.3e-06 Score=63.93 Aligned_cols=46 Identities=26% Similarity=0.448 Sum_probs=40.2
Q ss_pred ccCCCeeccCCeEEEecCCCC---CCceEEEEeCCCCCccccCCCCCCCcc
Q 042303 70 WCSSGGLTVDGHLVGTGGYQG---GANTVRYLWTCDTCDWIEYPTALAEPR 117 (519)
Q Consensus 70 ~c~~~~~l~dG~llv~GG~~~---g~~~v~~ydp~~~~~W~~~~~~m~~~R 117 (519)
+|..+++..+++|||+||..+ ..+++++|||. +++|+.+++ |+.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~-mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPE-TNTWEQLPP-MPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCC-CCcEEECCC-CCCCC
Confidence 566778889999999999875 25799999999 999999996 99987
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.09 E-value=2.8e-06 Score=61.87 Aligned_cols=48 Identities=8% Similarity=0.181 Sum_probs=29.8
Q ss_pred ceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCC
Q 042303 299 RRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTT 356 (519)
Q Consensus 299 ~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~ 356 (519)
+|..|+++.+.+++|||+||.... ......+++||++++ +|+.+++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~---~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-------GSPLNDLWIFDIETN---TWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--------TEE---EEEEETTTT---EEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-------CcccCCEEEEECCCC---EEEECCCCC
Confidence 689999888878999999998631 124457899999999 999998775
No 38
>smart00612 Kelch Kelch domain.
Probab=98.04 E-value=7.7e-06 Score=58.31 Aligned_cols=45 Identities=22% Similarity=0.444 Sum_probs=38.3
Q ss_pred eEEEecCCCC--CCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 81 HLVGTGGYQG--GANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 81 ~llv~GG~~~--g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
+||++||... ..+++++|||. +++|...++ |+.+|.+++++++ +|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~-~~~~r~~~~~~~~-~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPE-TNKWTPLPS-MPTPRSGHGVAVI-NG 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCC-CCeEccCCC-CCCccccceEEEe-CC
Confidence 5899999863 25789999999 999999986 9999999998887 54
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.02 E-value=1.1e-05 Score=58.73 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=39.0
Q ss_pred CCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeee
Q 042303 310 TGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSV 366 (519)
Q Consensus 310 dG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~ 366 (519)
+++|||+||.... .......+.+||+.++ +|+.+++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~------~~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDD------GGTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCC------CCCEecCEEEEECCCC---EEEECCCCCCCccceEEEE
Confidence 5789999998621 1233457899999999 9999999999999998764
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.96 E-value=1.8e-05 Score=57.63 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=35.8
Q ss_pred ceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCC
Q 042303 299 RRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTT 356 (519)
Q Consensus 299 ~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~ 356 (519)
+|..|++ +++|+||||+||...+ ........+++||+++. +|+.+++|+
T Consensus 1 ~r~~hs~-~~~~~kiyv~GG~~~~-----~~~~~~~~v~~~d~~t~---~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSA-VVLDGKIYVFGGYGTD-----NGGSSSNDVWVFDTETN---QWTELSPMG 49 (49)
T ss_pred CccceEE-EEECCEEEEECCcccC-----CCCcccceeEEEECCCC---EEeecCCCC
Confidence 5777775 4569999999998111 11223446899999999 999998774
No 41
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.59 E-value=0.00013 Score=53.02 Aligned_cols=44 Identities=30% Similarity=0.350 Sum_probs=37.7
Q ss_pred CCeEEEecCCCC--C--CceEEEEeCCCCCccccCCCCCCCccccceEEE
Q 042303 79 DGHLVGTGGYQG--G--ANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVT 124 (519)
Q Consensus 79 dG~llv~GG~~~--g--~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~ 124 (519)
+++|||+||... . .++++.||+. +.+|+++++ ++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~-~~~W~~~~~-~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLD-TNTWTRIGD-LPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECC-CCEEEECCC-CCCCccceEEEE
Confidence 578999999872 2 4789999999 899999975 999999998875
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.57 E-value=2.9e-05 Score=55.75 Aligned_cols=43 Identities=26% Similarity=0.449 Sum_probs=36.3
Q ss_pred ccCCCeeccCCeEEEecCCCC---CCceEEEEeCCCCCccccCCCCCC
Q 042303 70 WCSSGGLTVDGHLVGTGGYQG---GANTVRYLWTCDTCDWIEYPTALA 114 (519)
Q Consensus 70 ~c~~~~~l~dG~llv~GG~~~---g~~~v~~ydp~~~~~W~~~~~~m~ 114 (519)
++..+++..+++|||+||... ..+++++||+. +++|.++++ |+
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~-mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE-TNTWEELPP-MP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETT-TTEEEEEEE-ES
T ss_pred CccCEEEEECCEEEEEeeecccCceeeeEEEEeCC-CCEEEEcCC-CC
Confidence 566778888999999999864 25799999999 999999885 74
No 43
>PLN02772 guanylate kinase
Probab=97.12 E-value=0.0011 Score=69.02 Aligned_cols=70 Identities=10% Similarity=0.178 Sum_probs=53.5
Q ss_pred ceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeee---cCCCCcCCccceeeeEcCCCcEEE
Q 042303 299 RRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQE---LAPTTIPRMYHSVSVLLPDGKVLI 375 (519)
Q Consensus 299 ~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~---~~~~~~~R~yhs~a~LlpdG~V~v 375 (519)
+|..+++++ .++++||+||.... ......+.+||+.+. +|+. .+.-|.||-.||++ ++-|+||||
T Consensus 24 ~~~~~tav~-igdk~yv~GG~~d~-------~~~~~~v~i~D~~t~---~W~~P~V~G~~P~~r~GhSa~-v~~~~rilv 91 (398)
T PLN02772 24 PKNRETSVT-IGDKTYVIGGNHEG-------NTLSIGVQILDKITN---NWVSPIVLGTGPKPCKGYSAV-VLNKDRILV 91 (398)
T ss_pred CCCcceeEE-ECCEEEEEcccCCC-------ccccceEEEEECCCC---cEecccccCCCCCCCCcceEE-EECCceEEE
Confidence 677777655 59999999997532 112346789999999 9974 46788999999865 458999999
Q ss_pred ecCCC
Q 042303 376 AGSNT 380 (519)
Q Consensus 376 ~GG~~ 380 (519)
.+++.
T Consensus 92 ~~~~~ 96 (398)
T PLN02772 92 IKKGS 96 (398)
T ss_pred EeCCC
Confidence 98653
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.11 E-value=0.00078 Score=48.95 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=33.5
Q ss_pred ccCCCeeccCCeEEEecCC--CC---CCceEEEEeCCCCCccccCCCCC
Q 042303 70 WCSSGGLTVDGHLVGTGGY--QG---GANTVRYLWTCDTCDWIEYPTAL 113 (519)
Q Consensus 70 ~c~~~~~l~dG~llv~GG~--~~---g~~~v~~ydp~~~~~W~~~~~~m 113 (519)
++..++++.+++|||+||. .. -.+.+++||+. +.+|++++. |
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~-t~~W~~~~~-~ 48 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE-TNQWTELSP-M 48 (49)
T ss_pred ccceEEEEECCEEEEECCcccCCCCcccceeEEEECC-CCEEeecCC-C
Confidence 4455677889999999999 22 24689999999 999998874 5
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.93 E-value=0.00053 Score=49.70 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=25.3
Q ss_pred cCCCeeccCCeEEEecCCCC---CCceEEEEeCCCCCccccCCCCCC
Q 042303 71 CSSGGLTVDGHLVGTGGYQG---GANTVRYLWTCDTCDWIEYPTALA 114 (519)
Q Consensus 71 c~~~~~l~dG~llv~GG~~~---g~~~v~~ydp~~~~~W~~~~~~m~ 114 (519)
+++++.+.+++|+++||... -.+.+++||+. +++|+++++ |+
T Consensus 4 ~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~-~~~W~~~~~-~P 48 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIE-TNTWTRLPS-MP 48 (49)
T ss_dssp S-EEEEE-TTEEEEE--EEE-TEE---EEEEETT-TTEEEE--S-S-
T ss_pred eEEEEEEeCCeEEEECCCCCCCcccCCEEEEECC-CCEEEECCC-CC
Confidence 44445555799999999763 25789999999 899999875 65
No 46
>PLN02772 guanylate kinase
Probab=96.56 E-value=0.0064 Score=63.49 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=53.8
Q ss_pred cccCCCeeccCCeEEEecCCCCC---CceEEEEeCCCCCccccCC--CCCCCccccceEEEcCCCcEEEEcCCC
Q 042303 69 TWCSSGGLTVDGHLVGTGGYQGG---ANTVRYLWTCDTCDWIEYP--TALAEPRWYSTQVTLPDGGFIVVGGRG 137 (519)
Q Consensus 69 ~~c~~~~~l~dG~llv~GG~~~g---~~~v~~ydp~~~~~W~~~~--~~m~~~R~y~s~~~L~dG~V~viGG~~ 137 (519)
..|+..++..+.++||+||.++. ...+++||+. +.+|.... ..-+.+|-.||++++.|++|+|+++-.
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~-t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKI-TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccccceEEEEECC-CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 34445566667899999997753 3589999999 99998643 246788999999999999999998654
No 47
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=95.84 E-value=2.3 Score=42.51 Aligned_cols=246 Identities=19% Similarity=0.285 Sum_probs=129.4
Q ss_pred EEEEECCC-CcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccc---cCCCCCCCccccceEEEc
Q 042303 50 SVLFDIET-AKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWI---EYPTALAEPRWYSTQVTL 125 (519)
Q Consensus 50 ~~~yDp~t-~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~---~~~~~m~~~R~y~s~~~L 125 (519)
--+||--| ||-..++ ++..|--..+.-|.|..+..||.+ +.+.+|+.. +.+=. ....++...+.|-+.+..
T Consensus 79 lIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLd---N~Csiy~ls-~~d~~g~~~v~r~l~gHtgylScC~f 153 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLD---NKCSIYPLS-TRDAEGNVRVSRELAGHTGYLSCCRF 153 (343)
T ss_pred EEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcC---ceeEEEecc-cccccccceeeeeecCccceeEEEEE
Confidence 34677543 4444333 223333334577899999999975 456778765 33211 222235666788888866
Q ss_pred CC-CcEEEEcCCCCCceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEee-CCcEEEEeCCc
Q 042303 126 PD-GGFIVVGGRGAFSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVT-DGNLFIFSNNR 202 (519)
Q Consensus 126 ~d-G~V~viGG~~~~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~-~G~Ifv~Gg~~ 202 (519)
.| +.|+.-.|. .+.-+| -.+++ ....+. ||.|. -+ .+.+.+ +++.|+.|+.+
T Consensus 154 ~dD~~ilT~SGD--~TCalWDie~g~-----~~~~f~--------GH~gD--------V~--slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 154 LDDNHILTGSGD--MTCALWDIETGQ-----QTQVFH--------GHTGD--------VM--SLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred cCCCceEecCCC--ceEEEEEcccce-----EEEEec--------CCccc--------EE--EEecCCCCCCeEEecccc
Confidence 55 444443332 455555 33321 111111 22111 00 123445 89999999964
Q ss_pred --eEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceE
Q 042303 203 --SILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCG 280 (519)
Q Consensus 203 --~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~ 280 (519)
+.+||.+...-.+.+ ++. ... -.+.-.+| +|.-++.| ++ ..+|-
T Consensus 209 ~~aklWD~R~~~c~qtF---~gh-esD--INsv~ffP-----------~G~afatG-SD----------------D~tcR 254 (343)
T KOG0286|consen 209 KSAKLWDVRSGQCVQTF---EGH-ESD--INSVRFFP-----------SGDAFATG-SD----------------DATCR 254 (343)
T ss_pred cceeeeeccCcceeEee---ccc-ccc--cceEEEcc-----------CCCeeeec-CC----------------CceeE
Confidence 678898887655443 221 110 11222333 45545544 22 13677
Q ss_pred EEEecCCC--CceEeccCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcC
Q 042303 281 RIRITEPN--PVWKKEMMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIP 358 (519)
Q Consensus 281 ~~d~~~~~--~~W~~~~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~ 358 (519)
.||+.... ..++..+...+-...+ --..|+++..|..+ +.+++||--.. ++-..+. -..-
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~--FS~SGRlLfagy~d-------------~~c~vWDtlk~--e~vg~L~-GHeN 316 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVA--FSKSGRLLFAGYDD-------------FTCNVWDTLKG--ERVGVLA-GHEN 316 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEE--EcccccEEEeeecC-------------CceeEeecccc--ceEEEee-ccCC
Confidence 89987411 1122222333322222 23479999888543 25689997655 2333343 2334
Q ss_pred CccceeeeEcCCCcEEEecCC
Q 042303 359 RMYHSVSVLLPDGKVLIAGSN 379 (519)
Q Consensus 359 R~yhs~a~LlpdG~V~v~GG~ 379 (519)
|. |+.-+-|||.-+..|+-
T Consensus 317 Rv--Scl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 317 RV--SCLGVSPDGMAVATGSW 335 (343)
T ss_pred ee--EEEEECCCCcEEEecch
Confidence 43 55567799999998874
No 48
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.57 E-value=3.8 Score=43.14 Aligned_cols=241 Identities=18% Similarity=0.251 Sum_probs=115.6
Q ss_pred eEEEEECCCC--cEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCC-CCccccCCCCCC--CccccceEE
Q 042303 49 HSVLFDIETA--KLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCD-TCDWIEYPTALA--EPRWYSTQV 123 (519)
Q Consensus 49 ~~~~yDp~t~--~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~-~~~W~~~~~~m~--~~R~y~s~~ 123 (519)
....+|.+|+ .|+.-.. .... +.-++.+++|++..+ ...+..||+.+ ...|..... .+ ..|...+.+
T Consensus 131 ~l~ald~~tG~~~W~~~~~-~~~~--ssP~v~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~sP~ 202 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVA-GEAL--SRPVVSDGLVLVHTS----NGMLQALNESDGAVKWTVNLD-VPSLTLRGESAPA 202 (394)
T ss_pred EEEEEECCCCCCcccccCC-Ccee--cCCEEECCEEEEECC----CCEEEEEEccCCCEeeeecCC-CCcccccCCCCCE
Confidence 4557898887 4653211 1122 233556888887543 23688999872 234764321 11 112223333
Q ss_pred EcCCCcEEEEcCCCCCceEEe-CCCCC--CCCcccccccchhccccccCCccccccccc-ccCccceEEEeeCCcEEEEe
Q 042303 124 TLPDGGFIVVGGRGAFSYEYI-PPQGQ--SNKQSIYLPLLRETHDQLAGHFGTENFYRI-ENNLYPFVNLVTDGNLFIFS 199 (519)
Q Consensus 124 ~L~dG~V~viGG~~~~~~E~y-P~~~~--w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~-~~~~yp~~~~~~~G~Ifv~G 199 (519)
+ .+|.||+..+. + .+-.+ +.+++ |... ...|.- .. . +.+. ....-| ++.+|.||+.+
T Consensus 203 v-~~~~v~~~~~~-g-~v~a~d~~~G~~~W~~~-~~~~~~-~~-~----------~~~~~~~~~sP---~v~~~~vy~~~ 263 (394)
T PRK11138 203 T-AFGGAIVGGDN-G-RVSAVLMEQGQLIWQQR-ISQPTG-AT-E----------IDRLVDVDTTP---VVVGGVVYALA 263 (394)
T ss_pred E-ECCEEEEEcCC-C-EEEEEEccCChhhheec-cccCCC-cc-c----------hhcccccCCCc---EEECCEEEEEE
Confidence 3 37777775443 2 22223 44432 4210 000100 00 0 0000 000112 34588898876
Q ss_pred CC-ceEEeeCCCCe--EEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCC
Q 042303 200 NN-RSILFDPKANR--VIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPAL 276 (519)
Q Consensus 200 g~-~~~~yDp~t~~--w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~ 276 (519)
.. ...++|+++++ |.+.+ .. . ...++ .+++||++...
T Consensus 264 ~~g~l~ald~~tG~~~W~~~~---~~-~-----~~~~~-------------~~~~vy~~~~~------------------ 303 (394)
T PRK11138 264 YNGNLVALDLRSGQIVWKREY---GS-V-----NDFAV-------------DGGRIYLVDQN------------------ 303 (394)
T ss_pred cCCeEEEEECCCCCEEEeecC---CC-c-----cCcEE-------------ECCEEEEEcCC------------------
Confidence 43 46678998865 54321 10 0 01111 27888886532
Q ss_pred CceEEEEecCCCCceEeccCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeee-cCCC
Q 042303 277 QDCGRIRITEPNPVWKKEMMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQE-LAPT 355 (519)
Q Consensus 277 ~s~~~~d~~~~~~~W~~~~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~-~~~~ 355 (519)
..+.++|+.+....|+...+.. +...+ .++.+|+||+.... | .+.+.|+++++ ..|+. +.
T Consensus 304 g~l~ald~~tG~~~W~~~~~~~-~~~~s-p~v~~g~l~v~~~~--G------------~l~~ld~~tG~-~~~~~~~~-- 364 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDLLH-RLLTA-PVLYNGYLVVGDSE--G------------YLHWINREDGR-FVAQQKVD-- 364 (394)
T ss_pred CeEEEEECCCCcEEEcccccCC-CcccC-CEEECCEEEEEeCC--C------------EEEEEECCCCC-EEEEEEcC--
Confidence 1355677764455686543222 33333 23459999875322 1 34678888762 13443 21
Q ss_pred CcCCccceeeeEcCCCcEEEecC
Q 042303 356 TIPRMYHSVSVLLPDGKVLIAGS 378 (519)
Q Consensus 356 ~~~R~yhs~a~LlpdG~V~v~GG 378 (519)
....+.+-++. ||+|||..-
T Consensus 365 -~~~~~s~P~~~--~~~l~v~t~ 384 (394)
T PRK11138 365 -SSGFLSEPVVA--DDKLLIQAR 384 (394)
T ss_pred -CCcceeCCEEE--CCEEEEEeC
Confidence 11233333443 999998743
No 49
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.28 E-value=2.4 Score=42.20 Aligned_cols=231 Identities=20% Similarity=0.172 Sum_probs=122.3
Q ss_pred EEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccc---eEEEcCC
Q 042303 51 VLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYS---TQVTLPD 127 (519)
Q Consensus 51 ~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~---s~~~L~d 127 (519)
.-.||+|++...++.-.-..=.+.++-+||...|+-+ ...+..+||+ +...++.+ |+..+.+. +++-=.+
T Consensus 86 GhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~----~~aI~R~dpk-t~evt~f~--lp~~~a~~nlet~vfD~~ 158 (353)
T COG4257 86 GHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT----GLAIGRLDPK-TLEVTRFP--LPLEHADANLETAVFDPW 158 (353)
T ss_pred eecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC----cceeEEecCc-ccceEEee--cccccCCCcccceeeCCC
Confidence 3589999999887765444334455566777766632 2378899997 55555442 44444332 3333346
Q ss_pred CcEEEEcCCCCCceEEeCCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEE--eCCceEE
Q 042303 128 GGFIVVGGRGAFSYEYIPPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIF--SNNRSIL 205 (519)
Q Consensus 128 G~V~viGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~--Gg~~~~~ 205 (519)
|.+.-+|=.. .-.+.-|.++.- .+.|..+. -+. | -.++.+||.||+. .++-.-+
T Consensus 159 G~lWFt~q~G-~yGrLdPa~~~i----~vfpaPqG-----~gp------y--------Gi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 159 GNLWFTGQIG-AYGRLDPARNVI----SVFPAPQG-----GGP------Y--------GICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred ccEEEeeccc-cceecCcccCce----eeeccCCC-----CCC------c--------ceEECCCCcEEEEeccccceEE
Confidence 7887776321 111111443311 01111100 011 1 1466789999987 5555567
Q ss_pred eeCCCCeEEEEccCCCCC----CCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEE
Q 042303 206 FDPKANRVIREYPVLTGG----SRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGR 281 (519)
Q Consensus 206 yDp~t~~w~~~~p~~p~~----~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~ 281 (519)
.||.+..-. .++. |.. .|. ..+ ...+++.+. + ....++.+
T Consensus 215 idp~~~~ae-v~p~-P~~~~~gsRr---iws--------------dpig~~wit---t--------------wg~g~l~r 258 (353)
T COG4257 215 IDPFAGHAE-VVPQ-PNALKAGSRR---IWS--------------DPIGRAWIT---T--------------WGTGSLHR 258 (353)
T ss_pred cccccCCcc-eecC-CCcccccccc---ccc--------------CccCcEEEe---c--------------cCCceeeE
Confidence 888877533 3432 321 121 010 114555554 1 11235779
Q ss_pred EEecCCCCceEeccCC--cceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCC
Q 042303 282 IRITEPNPVWKKEMMP--TRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPR 359 (519)
Q Consensus 282 ~d~~~~~~~W~~~~M~--~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R 359 (519)
|||. ..+|.+-+|| .+|-+.- -|=-.|+|+..- .. .-....|||++- +|+.+ +++|
T Consensus 259 fdPs--~~sW~eypLPgs~arpys~-rVD~~grVW~se-a~------------agai~rfdpeta---~ftv~---p~pr 316 (353)
T COG4257 259 FDPS--VTSWIEYPLPGSKARPYSM-RVDRHGRVWLSE-AD------------AGAIGRFDPETA---RFTVL---PIPR 316 (353)
T ss_pred eCcc--cccceeeeCCCCCCCccee-eeccCCcEEeec-cc------------cCceeecCcccc---eEEEe---cCCC
Confidence 9998 5679876554 4555433 222346776521 11 114679999999 99876 4566
Q ss_pred ccceeeeEcCCCc
Q 042303 360 MYHSVSVLLPDGK 372 (519)
Q Consensus 360 ~yhs~a~LlpdG~ 372 (519)
-......| |||
T Consensus 317 ~n~gn~ql--~gr 327 (353)
T COG4257 317 PNSGNIQL--DGR 327 (353)
T ss_pred CCCCceec--cCC
Confidence 54443333 554
No 50
>PF13854 Kelch_5: Kelch motif
Probab=95.25 E-value=0.039 Score=38.60 Aligned_cols=41 Identities=7% Similarity=0.157 Sum_probs=28.0
Q ss_pred CCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCC
Q 042303 296 MPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKE 343 (519)
Q Consensus 296 M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t 343 (519)
+|.+|..|++++. +++|||+||... . .......+.+||..+
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~-~-----~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSG-N-----NNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccC-C-----CCCEECcEEEEECCC
Confidence 4789999997665 999999999862 0 112233566776554
No 51
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=94.28 E-value=6.5 Score=39.36 Aligned_cols=243 Identities=18% Similarity=0.198 Sum_probs=121.5
Q ss_pred CCCEEEEEeccccc-ccCcCCCCC-CCCccccCC-CC---CCCccceeEEEEECCCCcEE---ECc-c--CCCcccCCCe
Q 042303 8 KVNQVLMYDATVWK-ISKIPLPQE-KMPCRVIDP-KT---NEVDCWAHSVLFDIETAKLK---PLK-I--QTDTWCSSGG 75 (519)
Q Consensus 8 ~~g~vl~~~~~~~g-~~~~~~~~g-~~~~~~~~~-~~---~~~~~~~~~~~yDp~t~~w~---~l~-~--~~~~~c~~~~ 75 (519)
.|||++|||....+ .-.|++|.- .|.|-|.|. .. ...| ....+|+..+.+-. ++. . .+.-+-+...
T Consensus 75 qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd--N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~ 152 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD--NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR 152 (343)
T ss_pred cCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC--ceeEEEecccccccccceeeeeecCccceeEEEE
Confidence 59999999975533 234554431 346777665 21 1233 44567888765332 111 1 1223434456
Q ss_pred eccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccc--cceEEEcC-CCcEEEEcCCCCCceEEe-CCCCCCC
Q 042303 76 LTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRW--YSTQVTLP-DGGFIVVGGRGAFSYEYI-PPQGQSN 151 (519)
Q Consensus 76 ~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~--y~s~~~L~-dG~V~viGG~~~~~~E~y-P~~~~w~ 151 (519)
++.|+.|+..-|. .++..+|-. +.+=+. . .. ++- -.+....+ +++-||.||.+. +..+| -+.+.-
T Consensus 153 f~dD~~ilT~SGD----~TCalWDie-~g~~~~--~-f~-GH~gDV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~~c- 221 (343)
T KOG0286|consen 153 FLDDNHILTGSGD----MTCALWDIE-TGQQTQ--V-FH-GHTGDVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSGQC- 221 (343)
T ss_pred EcCCCceEecCCC----ceEEEEEcc-cceEEE--E-ec-CCcccEEEEecCCCCCCeEEeccccc-ceeeeeccCcce-
Confidence 7778888776563 355566644 222110 0 11 010 12333445 899999999874 23333 222100
Q ss_pred CcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCc--eEEeeCCCCeEEEEccCCCCCCCccCC
Q 042303 152 KQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNR--SILFDPKANRVIREYPVLTGGSRNYPA 229 (519)
Q Consensus 152 ~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~--~~~yDp~t~~w~~~~p~~p~~~r~~~~ 229 (519)
.-.+.-...| .| .+.-.|+|.-|+.|..+ ..+||.+.++-...+. ...-+.+.
T Consensus 222 ----~qtF~ghesD---------------IN---sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---~~~~~~gi 276 (343)
T KOG0286|consen 222 ----VQTFEGHESD---------------IN---SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---HDSIICGI 276 (343)
T ss_pred ----eEeecccccc---------------cc---eEEEccCCCeeeecCCCceeEEEeecCCcEEeeec---cCcccCCc
Confidence 0011000111 11 12224799999998765 5689999988543222 11223322
Q ss_pred CCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCceEeccCCcceeeceeEEec
Q 042303 230 SGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKEMMPTRRVMGDMTILP 309 (519)
Q Consensus 230 ~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~~M~~~R~~~~~vvLp 309 (519)
.+|.+ ...|++|++|..+ .+|...|.-. ...-....-...|...- -+-|
T Consensus 277 --tSv~F----------S~SGRlLfagy~d-----------------~~c~vWDtlk-~e~vg~L~GHeNRvScl-~~s~ 325 (343)
T KOG0286|consen 277 --TSVAF----------SKSGRLLFAGYDD-----------------FTCNVWDTLK-GERVGVLAGHENRVSCL-GVSP 325 (343)
T ss_pred --eeEEE----------cccccEEEeeecC-----------------CceeEeeccc-cceEEEeeccCCeeEEE-EECC
Confidence 22332 2489999998654 1355555321 01101112234455443 3568
Q ss_pred CCcEEEEcCc
Q 042303 310 TGDVLLVNGA 319 (519)
Q Consensus 310 dG~V~viGG~ 319 (519)
||.-+..|-.
T Consensus 326 DG~av~TgSW 335 (343)
T KOG0286|consen 326 DGMAVATGSW 335 (343)
T ss_pred CCcEEEecch
Confidence 8888776643
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.00 E-value=9.4 Score=40.14 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=36.1
Q ss_pred CCCeeccCCeEEEecCCCCCCceEEEEeCCC-CCccccCCCCCCCccccceEEEcCCCcEEEEcCCCCCceEEe-CCCCC
Q 042303 72 SSGGLTVDGHLVGTGGYQGGANTVRYLWTCD-TCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGAFSYEYI-PPQGQ 149 (519)
Q Consensus 72 ~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~-~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~~~~E~y-P~~~~ 149 (519)
+++.+..+++||+.+. ...+..+|..+ ...|... +... -+.+ .++.+++||+..+. ..+..+ +++++
T Consensus 113 ~~~~~v~~~~v~v~~~----~g~l~ald~~tG~~~W~~~---~~~~-~~ss-P~v~~~~v~v~~~~--g~l~ald~~tG~ 181 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE----KGQVYALNAEDGEVAWQTK---VAGE-ALSR-PVVSDGLVLVHTSN--GMLQALNESDGA 181 (394)
T ss_pred ccccEEECCEEEEEcC----CCEEEEEECCCCCCccccc---CCCc-eecC-CEEECCEEEEECCC--CEEEEEEccCCC
Confidence 3445666788877532 23688899862 3458642 2221 1222 23448888886543 234444 65553
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.96 E-value=5.7 Score=37.48 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=42.9
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCcc-ccceEEEcCCC
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPR-WYSTQVTLPDG 128 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R-~y~s~~~L~dG 128 (519)
..+||..+++.......+..........++++.+++++.. ..+.+||.. +.+... .+.... .-.+....+++
T Consensus 33 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i~i~~~~-~~~~~~---~~~~~~~~i~~~~~~~~~ 105 (289)
T cd00200 33 IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD---KTIRLWDLE-TGECVR---TLTGHTSYVSSVAFSPDG 105 (289)
T ss_pred EEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---CeEEEEEcC-cccceE---EEeccCCcEEEEEEcCCC
Confidence 4467766654221111111112233455677777887753 468888876 332211 121111 12234445567
Q ss_pred cEEEEcCCCCCceEEe
Q 042303 129 GFIVVGGRGAFSYEYI 144 (519)
Q Consensus 129 ~V~viGG~~~~~~E~y 144 (519)
++++.++.+ ..+.+|
T Consensus 106 ~~~~~~~~~-~~i~~~ 120 (289)
T cd00200 106 RILSSSSRD-KTIKVW 120 (289)
T ss_pred CEEEEecCC-CeEEEE
Confidence 888777744 345566
No 54
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.32 E-value=8.8 Score=40.78 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=121.1
Q ss_pred cceeEEEEECCCCcEEE-CccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCC--ccccceE
Q 042303 46 CWAHSVLFDIETAKLKP-LKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAE--PRWYSTQ 122 (519)
Q Consensus 46 ~~~~~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~--~R~y~s~ 122 (519)
|.+...+|+-.+..-.. +.-..+.-| +..+-.||+|+.+|+.. -.+.+||-. +. .-+.. |.. .+-..+-
T Consensus 46 ~S~rvqly~~~~~~~~k~~srFk~~v~-s~~fR~DG~LlaaGD~s---G~V~vfD~k-~r--~iLR~-~~ah~apv~~~~ 117 (487)
T KOG0310|consen 46 SSVRVQLYSSVTRSVRKTFSRFKDVVY-SVDFRSDGRLLAAGDES---GHVKVFDMK-SR--VILRQ-LYAHQAPVHVTK 117 (487)
T ss_pred cccEEEEEecchhhhhhhHHhhcccee-EEEeecCCeEEEccCCc---CcEEEeccc-cH--HHHHH-HhhccCceeEEE
Confidence 44555667766654332 222233333 24455699999999743 468899943 21 11111 221 1111111
Q ss_pred EEcCCCcEEEEcCCCCCceEEeCCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCc
Q 042303 123 VTLPDGGFIVVGGRGAFSYEYIPPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNR 202 (519)
Q Consensus 123 ~~L~dG~V~viGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~ 202 (519)
-.-.|+.+++.|+.+. ...+|-..+ ...+...... ..+.|. -.+.-.++.|++.||.+
T Consensus 118 f~~~d~t~l~s~sDd~-v~k~~d~s~----a~v~~~l~~h-----------tDYVR~------g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDK-VVKYWDLST----AYVQAELSGH-----------TDYVRC------GDISPANDHIVVTGSYD 175 (487)
T ss_pred ecccCCeEEEecCCCc-eEEEEEcCC----cEEEEEecCC-----------cceeEe------eccccCCCeEEEecCCC
Confidence 1114888998887553 333332111 0011111100 111111 01223478899999976
Q ss_pred --eEEeeCCCC-eEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCce
Q 042303 203 --SILFDPKAN-RVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDC 279 (519)
Q Consensus 203 --~~~yDp~t~-~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~ 279 (519)
..+||.++. .|..++ ..+. ..-.+++|. ....|..+||. ++
T Consensus 176 g~vrl~DtR~~~~~v~el---nhg~------pVe~vl~lp--------sgs~iasAgGn-------------------~v 219 (487)
T KOG0310|consen 176 GKVRLWDTRSLTSRVVEL---NHGC------PVESVLALP--------SGSLIASAGGN-------------------SV 219 (487)
T ss_pred ceEEEEEeccCCceeEEe---cCCC------ceeeEEEcC--------CCCEEEEcCCC-------------------eE
Confidence 567998876 554333 2111 112233331 13556666664 24
Q ss_pred EEEEecCCCCceEec-cCC-cceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCc
Q 042303 280 GRIRITEPNPVWKKE-MMP-TRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTI 357 (519)
Q Consensus 280 ~~~d~~~~~~~W~~~-~M~-~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~ 357 (519)
..+|+.. .. +.. .|. +-..-.+....-|++=++.||-+. .+-+|| +. .|+.+-.+..
T Consensus 220 kVWDl~~--G~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-------------~VKVfd--~t---~~Kvv~s~~~ 278 (487)
T KOG0310|consen 220 KVWDLTT--GG-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-------------HVKVFD--TT---NYKVVHSWKY 278 (487)
T ss_pred EEEEecC--Cc-eehhhhhcccceEEEEEeecCCceEeeccccc-------------ceEEEE--cc---ceEEEEeeec
Confidence 4566652 11 111 222 111111111222556667776541 467999 55 6877777666
Q ss_pred CCccceeeeEcCCCcEEEecCCCC
Q 042303 358 PRMYHSVSVLLPDGKVLIAGSNTH 381 (519)
Q Consensus 358 ~R~yhs~a~LlpdG~V~v~GG~~~ 381 (519)
|----|+++ -||++.+|+|...+
T Consensus 279 ~~pvLsiav-s~dd~t~viGmsnG 301 (487)
T KOG0310|consen 279 PGPVLSIAV-SPDDQTVVIGMSNG 301 (487)
T ss_pred ccceeeEEe-cCCCceEEEecccc
Confidence 655556665 58899988887543
No 55
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=93.06 E-value=1.7 Score=41.93 Aligned_cols=144 Identities=10% Similarity=0.167 Sum_probs=82.0
Q ss_pred eeEEEEECCCCcEEECccCCCc-ccCCCeeccCCeEEEecCCCCC-C-ceEEEEeCCCCCcccc-CCCCCCCcc----cc
Q 042303 48 AHSVLFDIETAKLKPLKIQTDT-WCSSGGLTVDGHLVGTGGYQGG-A-NTVRYLWTCDTCDWIE-YPTALAEPR----WY 119 (519)
Q Consensus 48 ~~~~~yDp~t~~w~~l~~~~~~-~c~~~~~l~dG~llv~GG~~~g-~-~~v~~ydp~~~~~W~~-~~~~m~~~R----~y 119 (519)
...++|+..+++|+.+...... ......++.||.++-+.-...+ . ..+-.||.. +++|.+ ++ ++..+ .+
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~-~E~f~~~i~--~P~~~~~~~~~ 146 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVS-SERFKEFIP--LPCGNSDSVDY 146 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcc-cceEeeeee--cCccccccccc
Confidence 4568999999999998743221 1111256678887776532221 1 268889999 899985 43 33322 24
Q ss_pred ceEEEcCCCcEEEEcCCCC-CceEEe-CC---CCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCc
Q 042303 120 STQVTLPDGGFIVVGGRGA-FSYEYI-PP---QGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGN 194 (519)
Q Consensus 120 ~s~~~L~dG~V~viGG~~~-~~~E~y-P~---~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~ 194 (519)
.....+ +|++.++.-... ...|+| -+ ...|.. ....++.... + + ....+| .....+|+
T Consensus 147 ~~L~~~-~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k-~~~i~~~~~~-~----------~---~~~~~~-~~~~~~g~ 209 (230)
T TIGR01640 147 LSLINY-KGKLAVLKQKKDTNNFDLWVLNDAGKQEWSK-LFTVPIPPLP-D----------L---VDDNFL-SGFTDKGE 209 (230)
T ss_pred eEEEEE-CCEEEEEEecCCCCcEEEEEECCCCCCceeE-EEEEcCcchh-h----------h---hhheeE-eEEeeCCE
Confidence 456677 799888765432 347777 32 334752 2223321000 0 0 011222 35567899
Q ss_pred EEEEeCC---c-eEEeeCCCC
Q 042303 195 LFIFSNN---R-SILFDPKAN 211 (519)
Q Consensus 195 Ifv~Gg~---~-~~~yDp~t~ 211 (519)
|++.... . ..+||+.+|
T Consensus 210 I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 210 IVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEeCCCCceEEEEEeccCC
Confidence 9887653 2 567888775
No 56
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.76 E-value=10 Score=36.95 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=46.4
Q ss_pred eEEEEECCCCcEEE-CccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCC
Q 042303 49 HSVLFDIETAKLKP-LKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPD 127 (519)
Q Consensus 49 ~~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~d 127 (519)
...+||..+++... +..... .....+.+||+.+.+.+.. ...+.+||.. +.+- +.. +.....-.+.+.-+|
T Consensus 54 ~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~~--~~~l~~~d~~-~~~~--~~~-~~~~~~~~~~~~~~d 125 (300)
T TIGR03866 54 TIQVIDLATGEVIGTLPSGPD--PELFALHPNGKILYIANED--DNLVTVIDIE-TRKV--LAE-IPVGVEPEGMAVSPD 125 (300)
T ss_pred eEEEEECCCCcEEEeccCCCC--ccEEEECCCCCEEEEEcCC--CCeEEEEECC-CCeE--EeE-eeCCCCcceEEECCC
Confidence 35579998887654 222112 1223455777755443322 2478899986 4321 111 221221234555679
Q ss_pred CcEEEEcCCCCCceEEe
Q 042303 128 GGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 128 G~V~viGG~~~~~~E~y 144 (519)
|++++++..+......|
T Consensus 126 g~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFI 142 (300)
T ss_pred CCEEEEEecCCCeEEEE
Confidence 99998876554334444
No 57
>PF13854 Kelch_5: Kelch motif
Probab=92.46 E-value=0.14 Score=35.84 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=20.9
Q ss_pred CCCccccceEEEcCCCcEEEEcCCC
Q 042303 113 LAEPRWYSTQVTLPDGGFIVVGGRG 137 (519)
Q Consensus 113 m~~~R~y~s~~~L~dG~V~viGG~~ 137 (519)
++.+|+.|++++. ++++||.||..
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYS 24 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCcc
Confidence 3568999999988 89999999987
No 58
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.44 E-value=11 Score=36.65 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=42.6
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeE-EEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHL-VGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l-lv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
..+||+.+++....-..... ..+..+.+||+. +++++. ...+.+||.. +.+.... +.....-...+..+||
T Consensus 13 v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~---~~~v~~~d~~-~~~~~~~---~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 13 ISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASD---SDTIQVIDLA-TGEVIGT---LPSGPDPELFALHPNG 84 (300)
T ss_pred EEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECC---CCeEEEEECC-CCcEEEe---ccCCCCccEEEECCCC
Confidence 44677776654322111111 223455678864 466543 3578899987 5554321 1111111234455687
Q ss_pred cEEEEcCCCCCceEEe
Q 042303 129 GFIVVGGRGAFSYEYI 144 (519)
Q Consensus 129 ~V~viGG~~~~~~E~y 144 (519)
+.+.+.+.....+.+|
T Consensus 85 ~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 85 KILYIANEDDNLVTVI 100 (300)
T ss_pred CEEEEEcCCCCeEEEE
Confidence 7544443333456666
No 59
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=92.14 E-value=0.24 Score=52.57 Aligned_cols=154 Identities=13% Similarity=0.153 Sum_probs=90.2
Q ss_pred CCcEEEEeCCc-------eEEeeCCCCeEEEEc---cCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCC
Q 042303 192 DGNLFIFSNNR-------SILFDPKANRVIREY---PVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWD 261 (519)
Q Consensus 192 ~G~Ifv~Gg~~-------~~~yDp~t~~w~~~~---p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~ 261 (519)
+..||..||++ .|.|.-+.|.|+ .+ ...|+ .|.. .-.|. . -...|+|+.|-.-..
T Consensus 272 ~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~-~iN~~t~~PG-~RsC---HRMVi-d---------~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 272 TECVYLYGGWDGTQDLADFWAYSVKENQWT-CINRDTEGPG-ARSC---HRMVI-D---------ISRRKLYLLGRYLDS 336 (723)
T ss_pred CcEEEEecCcccchhHHHHHhhcCCcceeE-EeecCCCCCc-chhh---hhhhh-h---------hhHhHHhhhhhcccc
Confidence 45999999975 478999999997 33 22343 3432 21221 1 124699999965421
Q ss_pred cccccccccccccCCCceEEEEecCCCCceEeccCCcc-------eeeceeEEecCCc--EEEEcCcCCCCCCccCCCCC
Q 042303 262 AFYYAEDKKQFWPALQDCGRIRITEPNPVWKKEMMPTR-------RVMGDMTILPTGD--VLLVNGAQNGTSAWNDAEEP 332 (519)
Q Consensus 262 ~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~~M~~~-------R~~~~~vvLpdG~--V~viGG~~~g~~g~~~~~~~ 332 (519)
+.. ....+-+...++|+. ++.|...+|... -.-|.|+|- ..| |||+||.... -+++
T Consensus 337 S~r------~~~s~RsDfW~FDi~--~~~W~~ls~dt~~dGGP~~vfDHqM~Vd-~~k~~iyVfGGr~~~------~~e~ 401 (723)
T KOG2437|consen 337 SVR------NSKSLRSDFWRFDID--TNTWMLLSEDTAADGGPKLVFDHQMCVD-SEKHMIYVFGGRILT------CNEP 401 (723)
T ss_pred ccc------cccccccceEEEecC--CceeEEecccccccCCcceeecceeeEe-cCcceEEEecCeecc------CCCc
Confidence 111 111334567889987 789987655544 345665442 455 9999998631 1223
Q ss_pred ccc-cEEEeCCCCCcceeeecCC----------CCcCCccceeeeEcCCCcE-EEecCC
Q 042303 333 ALA-PALYKTKEKRHHRFQELAP----------TTIPRMYHSVSVLLPDGKV-LIAGSN 379 (519)
Q Consensus 333 ~~~-~e~YdP~t~~g~~W~~~~~----------~~~~R~yhs~a~LlpdG~V-~v~GG~ 379 (519)
++. ...||-... .|..++. -.+.|+.|.+-.. +|.+. |+.||-
T Consensus 402 ~f~GLYaf~~~~~---~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~-~~n~~ly~fggq 456 (723)
T KOG2437|consen 402 QFSGLYAFNCQCQ---TWKLLREDSCNAGPVVEDIQSRIGHCMEFH-SKNRCLYVFGGQ 456 (723)
T ss_pred cccceEEEecCCc---cHHHHHHHHhhcCcchhHHHHHHHHHHHhc-CCCCeEEeccCc
Confidence 332 456776665 7765432 2356888876543 55555 555553
No 60
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=91.12 E-value=17 Score=35.84 Aligned_cols=228 Identities=15% Similarity=0.195 Sum_probs=116.3
Q ss_pred CCCCCccceeEEEEECCCCcEEECccCCCc--ccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCcc
Q 042303 40 KTNEVDCWAHSVLFDIETAKLKPLKIQTDT--WCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPR 117 (519)
Q Consensus 40 ~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~--~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R 117 (519)
+.+...|+.|..+||..+++=.|+....-. ---+..+-.||+++.+||.+ | .++++|-. .-. ........-
T Consensus 53 ~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-g--t~kIWdlR-~~~---~qR~~~~~s 125 (311)
T KOG0315|consen 53 KDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-G--TVKIWDLR-SLS---CQRNYQHNS 125 (311)
T ss_pred chhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-c--eEEEEecc-Ccc---cchhccCCC
Confidence 455667899999999999875444332111 11122355699999999864 3 56677755 210 000111111
Q ss_pred ccceEEEcCCCcEEEEcCCCCCceEEe-CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEE
Q 042303 118 WYSTQVTLPDGGFIVVGGRGAFSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLF 196 (519)
Q Consensus 118 ~y~s~~~L~dG~V~viGG~~~~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~If 196 (519)
--.+++.-++.--+++|-.+ ..+.+| -.++.... ..+|-. .+. --.+.+.+||+..
T Consensus 126 pVn~vvlhpnQteLis~dqs-g~irvWDl~~~~c~~--~liPe~-~~~-------------------i~sl~v~~dgsml 182 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQS-GNIRVWDLGENSCTH--ELIPED-DTS-------------------IQSLTVMPDGSML 182 (311)
T ss_pred CcceEEecCCcceEEeecCC-CcEEEEEccCCcccc--ccCCCC-Ccc-------------------eeeEEEcCCCcEE
Confidence 11233444454445555433 345566 44443221 111210 010 0125677899999
Q ss_pred EEeCCceEEe--eCCCCeEEEEccCCCCCCCccCCC---CcEEecccccccCCccccCCeEEEEcCCCCCcccccccccc
Q 042303 197 IFSNNRSILF--DPKANRVIREYPVLTGGSRNYPAS---GMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQ 271 (519)
Q Consensus 197 v~Gg~~~~~y--Dp~t~~w~~~~p~~p~~~r~~~~~---g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 271 (519)
+.+++..-+| +.-+..-...+-|+. .|+++ +...+|- .++|.++.-+++
T Consensus 183 ~a~nnkG~cyvW~l~~~~~~s~l~P~~----k~~ah~~~il~C~lS----------Pd~k~lat~ssd------------ 236 (311)
T KOG0315|consen 183 AAANNKGNCYVWRLLNHQTASELEPVH----KFQAHNGHILRCLLS----------PDVKYLATCSSD------------ 236 (311)
T ss_pred EEecCCccEEEEEccCCCccccceEhh----heecccceEEEEEEC----------CCCcEEEeecCC------------
Confidence 9888765444 443332111222221 12111 2222221 267777766654
Q ss_pred cccCCCceEEEEecCCCCceEec-cC-CcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCC
Q 042303 272 FWPALQDCGRIRITEPNPVWKKE-MM-PTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEK 344 (519)
Q Consensus 272 ~~~a~~s~~~~d~~~~~~~W~~~-~M-~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~ 344 (519)
.+|.+++.. +- ...+ .+ ...|+.-+++--.||+-+|+|+.+. .+.+||+.++
T Consensus 237 -----ktv~iwn~~--~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~-------------~~rlW~~~~~ 290 (311)
T KOG0315|consen 237 -----KTVKIWNTD--DF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH-------------TARLWDLSAG 290 (311)
T ss_pred -----ceEEEEecC--Cc-eeeEEEeecCCceEEeeeeccCccEEEecCCCC-------------ceeecccccC
Confidence 244445433 11 2223 22 2347766766667999999887641 4678998887
No 61
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.07 E-value=21 Score=36.87 Aligned_cols=95 Identities=19% Similarity=0.085 Sum_probs=49.5
Q ss_pred eeEEEEECCCCcEEECccCCCcc-cCCCeeccC-CeEEEecCCCCCCceEEEEe--CCCCCccccCCCCCC-CccccceE
Q 042303 48 AHSVLFDIETAKLKPLKIQTDTW-CSSGGLTVD-GHLVGTGGYQGGANTVRYLW--TCDTCDWIEYPTALA-EPRWYSTQ 122 (519)
Q Consensus 48 ~~~~~yDp~t~~w~~l~~~~~~~-c~~~~~l~d-G~llv~GG~~~g~~~v~~yd--p~~~~~W~~~~~~m~-~~R~y~s~ 122 (519)
-+...||.++++++.+......- .+.-++-++ ..||++.-.......+..|+ +. +.+.+.+.. .. .+..-...
T Consensus 15 I~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-~g~L~~~~~-~~~~g~~p~~i 92 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-TGTLTLLNS-VPSGGSSPCHI 92 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-TTEEEEEEE-EEESSSCEEEE
T ss_pred EEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-cceeEEeee-eccCCCCcEEE
Confidence 56778899999998876532211 222233345 45666644311223444444 43 345554432 33 34433334
Q ss_pred EEcCCCcEEEEcCCCCCceEEe
Q 042303 123 VTLPDGGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 123 ~~L~dG~V~viGG~~~~~~E~y 144 (519)
++-+||+.+++.-..+.++.+|
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEE
Confidence 4546787666654444567777
No 62
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.28 E-value=7.9 Score=37.29 Aligned_cols=153 Identities=13% Similarity=0.178 Sum_probs=77.7
Q ss_pred CCcEEEEeCCceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccc
Q 042303 192 DGNLFIFSNNRSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQ 271 (519)
Q Consensus 192 ~G~Ifv~Gg~~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 271 (519)
||-|.+.......++||.|.+|. .+|+.+. .+.++... +..+-..+ ...+=||+.+..... .
T Consensus 5 nGLlc~~~~~~~~V~NP~T~~~~-~LP~~~~-~~~~~~~~-~~~~G~d~-----~~~~YKVv~~~~~~~-~--------- 66 (230)
T TIGR01640 5 DGLICFSYGKRLVVWNPSTGQSR-WLPTPKS-RRSNKESD-TYFLGYDP-----IEKQYKVLCFSDRSG-N--------- 66 (230)
T ss_pred ceEEEEecCCcEEEECCCCCCEE-ecCCCCC-cccccccc-eEEEeecc-----cCCcEEEEEEEeecC-C---------
Confidence 44444333345568999999986 6876442 21221111 11111111 112446776654210 0
Q ss_pred cccCCCceEEEEecCCCCceEec-cCCc-ceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCccee
Q 042303 272 FWPALQDCGRIRITEPNPVWKKE-MMPT-RRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRF 349 (519)
Q Consensus 272 ~~~a~~s~~~~d~~~~~~~W~~~-~M~~-~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W 349 (519)
.....++.|++. +++|... ..+. -.....++ +.||.+|.+.-...+ .+...+..||-.+. +|
T Consensus 67 --~~~~~~~Vys~~--~~~Wr~~~~~~~~~~~~~~~v-~~~G~lyw~~~~~~~--------~~~~~IvsFDl~~E---~f 130 (230)
T TIGR01640 67 --RNQSEHQVYTLG--SNSWRTIECSPPHHPLKSRGV-CINGVLYYLAYTLKT--------NPDYFIVSFDVSSE---RF 130 (230)
T ss_pred --CCCccEEEEEeC--CCCccccccCCCCccccCCeE-EECCEEEEEEEECCC--------CCcEEEEEEEcccc---eE
Confidence 012467899987 6799876 3221 11112233 459999998643211 12225789999999 99
Q ss_pred eecCCCCcCCc-cc-eeeeEcCCCcEEEecC
Q 042303 350 QELAPTTIPRM-YH-SVSVLLPDGKVLIAGS 378 (519)
Q Consensus 350 ~~~~~~~~~R~-yh-s~a~LlpdG~V~v~GG 378 (519)
+..-++|..+. .+ ...+...+|++-++..
T Consensus 131 ~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 131 KEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred eeeeecCccccccccceEEEEECCEEEEEEe
Confidence 85223343332 11 1222222788766654
No 63
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.33 E-value=27 Score=35.46 Aligned_cols=91 Identities=11% Similarity=-0.054 Sum_probs=46.2
Q ss_pred EEEECC-CCcEEECccCCCcccC-CCeeccCCeEEEecCCCCCCceEEEEeCCCCCc-cccCCCCCCCccccceEEEcCC
Q 042303 51 VLFDIE-TAKLKPLKIQTDTWCS-SGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCD-WIEYPTALAEPRWYSTQVTLPD 127 (519)
Q Consensus 51 ~~yDp~-t~~w~~l~~~~~~~c~-~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~-W~~~~~~m~~~R~y~s~~~L~d 127 (519)
..|+.. +++++.+......-.. ..++.+||+.+.+..+. ...+.+||.. ++. ..+....+.....-++++.-+|
T Consensus 60 ~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~--~~~v~v~~~~-~~g~~~~~~~~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 60 LSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN--ANCVSVSPLD-KDGIPVAPIQIIEGLEGCHSANIDPD 136 (330)
T ss_pred EEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC--CCeEEEEEEC-CCCCCCCceeeccCCCcccEeEeCCC
Confidence 346664 4566544322211111 23456788866666543 3567778764 221 1111111222222345556678
Q ss_pred CcEEEEcCCCCCceEEe
Q 042303 128 GGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 128 G~V~viGG~~~~~~E~y 144 (519)
|+.+.+.......+.+|
T Consensus 137 g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCEEEEeeCCCCEEEEE
Confidence 87776666665677888
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=89.13 E-value=41 Score=38.97 Aligned_cols=142 Identities=13% Similarity=0.062 Sum_probs=70.3
Q ss_pred eCCcEEEEeCCc--eEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCccccccc
Q 042303 191 TDGNLFIFSNNR--SILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAED 268 (519)
Q Consensus 191 ~~G~Ifv~Gg~~--~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 268 (519)
.++.+++.|+.+ ..+||..+......+. . .. .-.++.+. ..+++++++|+.+
T Consensus 586 ~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~--~~---~v~~v~~~---------~~~g~~latgs~d--------- 639 (793)
T PLN00181 586 ADPTLLASGSDDGSVKLWSINQGVSIGTIK---T--KA---NICCVQFP---------SESGRSLAFGSAD--------- 639 (793)
T ss_pred CCCCEEEEEcCCCEEEEEECCCCcEEEEEe---c--CC---CeEEEEEe---------CCCCCEEEEEeCC---------
Confidence 378888888764 5678987765332221 1 00 11122221 1268888888765
Q ss_pred ccccccCCCceEEEEecCCCCceEeccCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCC-cc
Q 042303 269 KKQFWPALQDCGRIRITEPNPVWKKEMMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKR-HH 347 (519)
Q Consensus 269 ~~~~~~a~~s~~~~d~~~~~~~W~~~~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~-g~ 347 (519)
..+..||+........... .+. .....+...++..++.++.+. ++.+||..+.. +.
T Consensus 640 --------g~I~iwD~~~~~~~~~~~~-~h~-~~V~~v~f~~~~~lvs~s~D~-------------~ikiWd~~~~~~~~ 696 (793)
T PLN00181 640 --------HKVYYYDLRNPKLPLCTMI-GHS-KTVSYVRFVDSSTLVSSSTDN-------------TLKLWDLSMSISGI 696 (793)
T ss_pred --------CeEEEEECCCCCccceEec-CCC-CCEEEEEEeCCCEEEEEECCC-------------EEEEEeCCCCcccc
Confidence 2355677653111111111 111 011223445888888887531 46789876531 01
Q ss_pred eeeecCCCCcCCccceeeeEcCCCcEEEecCCCC
Q 042303 348 RFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNTH 381 (519)
Q Consensus 348 ~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~ 381 (519)
.|..+..............+-++|+.+++|+..+
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 2322221111011112234567999999998643
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.80 E-value=31 Score=36.82 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=33.2
Q ss_pred CCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCceEec-cCCcceeeceeEEecCCcEEEEcCcC
Q 042303 249 HSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQ 320 (519)
Q Consensus 249 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~ 320 (519)
++.=|+.||.+. .+..||. ..|+.. .|.++---.+..+-||+...++|..+
T Consensus 249 ~~~rLlS~sLD~-----------------~VKVfd~----t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 249 DSTRLLSGSLDR-----------------HVKVFDT----TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred CCceEeeccccc-----------------ceEEEEc----cceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 445667777751 3446764 357776 66555444455678999999999865
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.99 E-value=17 Score=35.26 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=22.7
Q ss_pred eCCcEEEEeCCceEEeeCCCCeEEEEccCC
Q 042303 191 TDGNLFIFSNNRSILFDPKANRVIREYPVL 220 (519)
Q Consensus 191 ~~G~Ifv~Gg~~~~~yDp~t~~w~~~~p~~ 220 (519)
.+|++|+.......++|+.++++. .+...
T Consensus 50 ~~g~l~v~~~~~~~~~d~~~g~~~-~~~~~ 78 (246)
T PF08450_consen 50 PDGRLYVADSGGIAVVDPDTGKVT-VLADL 78 (246)
T ss_dssp TTSEEEEEETTCEEEEETTTTEEE-EEEEE
T ss_pred cCCEEEEEEcCceEEEecCCCcEE-EEeec
Confidence 589999988777778899999876 45444
No 67
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.66 E-value=19 Score=34.24 Aligned_cols=140 Identities=16% Similarity=0.203 Sum_probs=71.5
Q ss_pred EeeCCcEEEEe-CCceEEeeCCCCe--EEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccc
Q 042303 189 LVTDGNLFIFS-NNRSILFDPKANR--VIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYY 265 (519)
Q Consensus 189 ~~~~G~Ifv~G-g~~~~~yDp~t~~--w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~ 265 (519)
+..+|+||+.. .....+||..+++ |...+ +. +. ....+ ..+++||+....
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~--~~---~~~~~------------~~~~~v~v~~~~------- 85 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PG--PI---SGAPV------------VDGGRVYVGTSD------- 85 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEEC---SS--CG---GSGEE------------EETTEEEEEETT-------
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeec---cc--cc---cceee------------ecccccccccce-------
Confidence 33688888873 4456789998876 43322 21 11 11111 137888776521
Q ss_pred cccccccccCCCceEEEEecCCCCceEe-c-cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCC
Q 042303 266 AEDKKQFWPALQDCGRIRITEPNPVWKK-E-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKE 343 (519)
Q Consensus 266 ~~~~~~~~~a~~s~~~~d~~~~~~~W~~-~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t 343 (519)
..+.++|..+....|+. . .-+..+.........+|+.++++... + .+.++|+++
T Consensus 86 -----------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g------------~l~~~d~~t 141 (238)
T PF13360_consen 86 -----------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-G------------KLVALDPKT 141 (238)
T ss_dssp -----------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-S------------EEEEEETTT
T ss_pred -----------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc-C------------cEEEEecCC
Confidence 13557886655667984 4 32333222222222245544544432 1 457899987
Q ss_pred CCcceeeecCCCCcC-C----cc-ceeeeEcCCCcEEEecCCC
Q 042303 344 KRHHRFQELAPTTIP-R----MY-HSVSVLLPDGKVLIAGSNT 380 (519)
Q Consensus 344 ~~g~~W~~~~~~~~~-R----~y-hs~a~LlpdG~V~v~GG~~ 380 (519)
++ ..|+.-...+.. - .. .....++.+|+||++.+..
T Consensus 142 G~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 142 GK-LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp TE-EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred Cc-EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 72 246543332211 0 01 1234455578999988654
No 68
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=87.31 E-value=14 Score=38.24 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=31.7
Q ss_pred eeEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCC
Q 042303 48 AHSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQ 89 (519)
Q Consensus 48 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~ 89 (519)
..+.+||.+|.....++.+....+....+-..++||+.-...
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~ 127 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSP 127 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccC
Confidence 457899999999999888776555555555577899987653
No 69
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=86.84 E-value=0.78 Score=48.81 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=32.6
Q ss_pred CCccccCCC-C--------CCCccccceEEEcCCC--cEEEEcCCCC----CceEEe-CCCCCCC
Q 042303 103 TCDWIEYPT-A--------LAEPRWYSTQVTLPDG--GFIVVGGRGA----FSYEYI-PPQGQSN 151 (519)
Q Consensus 103 ~~~W~~~~~-~--------m~~~R~y~s~~~L~dG--~V~viGG~~~----~~~E~y-P~~~~w~ 151 (519)
+..|++... + =+-.|..|.++.. ++ .||.-||.++ ...+.| -..++|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~-~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~ 301 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVID-VQTECVYLYGGWDGTQDLADFWAYSVKENQWT 301 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEe-CCCcEEEEecCcccchhHHHHHhhcCCcceeE
Confidence 456876542 1 1235888888876 45 9999999987 234567 6777784
No 70
>PRK13684 Ycf48-like protein; Provisional
Probab=86.24 E-value=44 Score=34.46 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=43.5
Q ss_pred CCceEeccCCcc---eeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCC-CCcCCccce
Q 042303 288 NPVWKKEMMPTR---RVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAP-TTIPRMYHS 363 (519)
Q Consensus 288 ~~~W~~~~M~~~---R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~-~~~~R~yhs 363 (519)
...|+...++.. ....+.+..++++++++|... .+|- ..+.|++|+.+.. ...+..+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G----------------~v~~-S~d~G~tW~~~~~~~~~~~~~~~ 307 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG----------------TLLV-SKDGGKTWEKDPVGEEVPSNFYK 307 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEcCCC----------------eEEE-eCCCCCCCeECCcCCCCCcceEE
Confidence 568987644321 222343456788999887642 1232 2456679998753 334444444
Q ss_pred eeeEcCCCcEEEecCC
Q 042303 364 VSVLLPDGKVLIAGSN 379 (519)
Q Consensus 364 ~a~LlpdG~V~v~GG~ 379 (519)
+. ...++++|++|..
T Consensus 308 ~~-~~~~~~~~~~G~~ 322 (334)
T PRK13684 308 IV-FLDPEKGFVLGQR 322 (334)
T ss_pred EE-EeCCCceEEECCC
Confidence 33 4568888888864
No 71
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=84.84 E-value=14 Score=38.42 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=69.7
Q ss_pred ccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcEEEEcCCCCC---------ceEEe---
Q 042303 77 TVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGAF---------SYEYI--- 144 (519)
Q Consensus 77 l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~~---------~~E~y--- 144 (519)
+.+.+|+.++.. ..+-+||+. +..-..++. |..+..++-++.+ ++++||+...... ..|.+
T Consensus 74 l~gskIv~~d~~----~~t~vyDt~-t~av~~~P~-l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 74 LHGSKIVAVDQS----GRTLVYDTD-TRAVATGPR-LHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred ecCCeEEEEcCC----CCeEEEECC-CCeEeccCC-CCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEEeccc
Confidence 357788888653 347799998 777777775 8888888876676 7789999876321 55654
Q ss_pred C------CCCCCCCcccccccchhccccccCCcccccccccccCccceEEEee-CCcEEEEe-CC--ceEEeeCCCCeEE
Q 042303 145 P------PQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVT-DGNLFIFS-NN--RSILFDPKANRVI 214 (519)
Q Consensus 145 P------~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~-~G~Ifv~G-g~--~~~~yDp~t~~w~ 214 (519)
+ ....|. |..+|.+.-..+.. + ..... ..+++. +..|||.- +. ....||..+.+|.
T Consensus 147 ~~~~~~~~~~~w~--W~~LP~PPf~~~~~---------~-~~~~i--~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~ 212 (342)
T PF07893_consen 147 PPPDDPSPEESWS--WRSLPPPPFVRDRR---------Y-SDYRI--TSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWR 212 (342)
T ss_pred cccccccCCCcce--EEcCCCCCccccCC---------c-ccceE--EEEEEecCCeEEEEecCCceEEEEEEcCCccee
Confidence 2 233353 33333221000000 0 00001 123344 55889843 33 4789999999997
Q ss_pred E
Q 042303 215 R 215 (519)
Q Consensus 215 ~ 215 (519)
+
T Consensus 213 ~ 213 (342)
T PF07893_consen 213 K 213 (342)
T ss_pred e
Confidence 4
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=82.05 E-value=67 Score=33.25 Aligned_cols=77 Identities=21% Similarity=0.422 Sum_probs=40.7
Q ss_pred eEEEEecCCCCceEec-cCCcce--------eeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCccee
Q 042303 279 CGRIRITEPNPVWKKE-MMPTRR--------VMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRF 349 (519)
Q Consensus 279 ~~~~d~~~~~~~W~~~-~M~~~R--------~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W 349 (519)
+..+|+......|+.. ..+..+ .... .++.++.||+.... | .+.+||+++++ ..|
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~-p~~~~~~vy~~~~~--g------------~l~a~d~~tG~-~~W 265 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGD-PVVDGGQVYAVSYQ--G------------RVAALDLRSGR-VLW 265 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCc-cEEECCEEEEEEcC--C------------EEEEEECCCCc-EEE
Confidence 4467765434568754 322211 1122 33458888886432 1 35789988752 357
Q ss_pred eecCCCCcCCccceeeeEcCCCcEEEecC
Q 042303 350 QELAPTTIPRMYHSVSVLLPDGKVLIAGS 378 (519)
Q Consensus 350 ~~~~~~~~~R~yhs~a~LlpdG~V~v~GG 378 (519)
+.-. ..+.+.+ +.|++||+...
T Consensus 266 ~~~~-----~~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 266 KRDA-----SSYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred eecc-----CCccCce--EeCCEEEEECC
Confidence 5421 1122223 34899998753
No 73
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=81.15 E-value=84 Score=33.78 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=46.1
Q ss_pred EEECCCCcEEECccC--CCcccCC-Cee--ccCCeEEEecCCCCCC--ceE-----------EEEeCCCCCccccCCCCC
Q 042303 52 LFDIETAKLKPLKIQ--TDTWCSS-GGL--TVDGHLVGTGGYQGGA--NTV-----------RYLWTCDTCDWIEYPTAL 113 (519)
Q Consensus 52 ~yDp~t~~w~~l~~~--~~~~c~~-~~~--l~dG~llv~GG~~~g~--~~v-----------~~ydp~~~~~W~~~~~~m 113 (519)
.++|.-+.|..+... ....|.+ +++ --||.||.-|=..+|. +.+ ..+|.. ...|++. .|
T Consensus 90 ~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~-~~~~tP~--~v 166 (476)
T COG5184 90 VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDY-ELESTPF--KV 166 (476)
T ss_pred ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchh-hcccCCc--ee
Confidence 688888888755433 3445652 333 3379999998544332 111 122221 1122211 12
Q ss_pred CC--------------ccccceEEEcCCCcEEEEcCC
Q 042303 114 AE--------------PRWYSTQVTLPDGGFIVVGGR 136 (519)
Q Consensus 114 ~~--------------~R~y~s~~~L~dG~V~viGG~ 136 (519)
+. .-|..++++-.||+||..|..
T Consensus 167 ~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~ 203 (476)
T COG5184 167 PGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF 203 (476)
T ss_pred eccccccCChheEEeecCCceEEEEccCCcEEEecCc
Confidence 22 236678888889999999974
No 74
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=79.86 E-value=72 Score=32.25 Aligned_cols=92 Identities=12% Similarity=0.001 Sum_probs=44.9
Q ss_pred EEEEECCC-CcEEECccCCCc-ccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCC
Q 042303 50 SVLFDIET-AKLKPLKIQTDT-WCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPD 127 (519)
Q Consensus 50 ~~~yDp~t-~~w~~l~~~~~~-~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~d 127 (519)
...||..+ ++++.+...... ....-++-+||+.|.+|+.. ...+..|+..+..+++.... ..........+.-+|
T Consensus 14 I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~-~~~~~~p~~i~~~~~ 90 (330)
T PRK11028 14 IHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAE-SPLPGSPTHISTDHQ 90 (330)
T ss_pred EEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeee-ecCCCCceEEEECCC
Confidence 34667653 466555433211 11223455688866665543 24566676541334543321 222222223455568
Q ss_pred CcEEEEcCCCCCceEEe
Q 042303 128 GGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 128 G~V~viGG~~~~~~E~y 144 (519)
|+.+.+.......+-+|
T Consensus 91 g~~l~v~~~~~~~v~v~ 107 (330)
T PRK11028 91 GRFLFSASYNANCVSVS 107 (330)
T ss_pred CCEEEEEEcCCCeEEEE
Confidence 87666555444455556
No 75
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=78.98 E-value=53 Score=33.49 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=42.2
Q ss_pred EEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEe-CCCCCccccCCCCCCCccc-cceEEEcCCC
Q 042303 51 VLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLW-TCDTCDWIEYPTALAEPRW-YSTQVTLPDG 128 (519)
Q Consensus 51 ~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~yd-p~~~~~W~~~~~~m~~~R~-y~s~~~L~dG 128 (519)
..+||--..|.+.......+-....+.+|+.|+++. .. | .+++=+ +.+..+|.+.........+ +..++--.++
T Consensus 169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G-g--~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG-G--QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT-T--EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEecCCCccceEEccCccceehhceecCCCCEEEEe-CC-c--EEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 467888888998876666666666777888886653 11 1 233323 3325678763211323333 4666777789
Q ss_pred cEEEEcCCC
Q 042303 129 GFIVVGGRG 137 (519)
Q Consensus 129 ~V~viGG~~ 137 (519)
.++++||..
T Consensus 245 ~~wa~gg~G 253 (302)
T PF14870_consen 245 EIWAVGGSG 253 (302)
T ss_dssp -EEEEESTT
T ss_pred CEEEEeCCc
Confidence 999999975
No 76
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=78.76 E-value=57 Score=30.43 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=33.1
Q ss_pred eccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCcccc-ceEEEcCCCcEEEEcCCCCCceEEe
Q 042303 76 LTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWY-STQVTLPDGGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 76 ~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y-~s~~~L~dG~V~viGG~~~~~~E~y 144 (519)
..++++++++|+.. ..+.+||.. +.+-... +...... ......++++.+++++.+ ..+.+|
T Consensus 17 ~~~~~~~l~~~~~~---g~i~i~~~~-~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~-~~i~i~ 78 (289)
T cd00200 17 FSPDGKLLATGSGD---GTIKVWDLE-TGELLRT---LKGHTGPVRDVAASADGTYLASGSSD-KTIRLW 78 (289)
T ss_pred EcCCCCEEEEeecC---cEEEEEEee-CCCcEEE---EecCCcceeEEEECCCCCEEEEEcCC-CeEEEE
Confidence 44567788887742 467788765 3321110 1111111 244556678788888765 345566
No 77
>PRK13684 Ycf48-like protein; Provisional
Probab=78.63 E-value=85 Score=32.34 Aligned_cols=75 Identities=15% Similarity=0.344 Sum_probs=44.7
Q ss_pred CCceEeccCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCcc--ceee
Q 042303 288 NPVWKKEMMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMY--HSVS 365 (519)
Q Consensus 288 ~~~W~~~~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~y--hs~a 365 (519)
..+|+..+.+..+...+.+..++|+++++|.. |. .++. .+|.|.+|+....-.....+ ++++
T Consensus 203 g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~--G~-------------~~~~-s~d~G~sW~~~~~~~~~~~~~l~~v~ 266 (334)
T PRK13684 203 QTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG--GQ-------------IRFN-DPDDLESWSKPIIPEITNGYGYLDLA 266 (334)
T ss_pred CCeEEEeeCCCcccceeeeEcCCCCEEEEecC--CE-------------EEEc-cCCCCCccccccCCccccccceeeEE
Confidence 35798875455566566567789999998753 21 2231 35667799865321111222 3333
Q ss_pred eEcCCCcEEEecCC
Q 042303 366 VLLPDGKVLIAGSN 379 (519)
Q Consensus 366 ~LlpdG~V~v~GG~ 379 (519)
..++++++++|..
T Consensus 267 -~~~~~~~~~~G~~ 279 (334)
T PRK13684 267 -YRTPGEIWAGGGN 279 (334)
T ss_pred -EcCCCCEEEEcCC
Confidence 3578899998864
No 78
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=78.60 E-value=16 Score=29.45 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=49.3
Q ss_pred CCceecCCCCCccccCceEEEEEEeccccccceEEEEEEeCCcccccCCCCCceEEeeeeeeeecCCCCcEEEEEEcCCC
Q 042303 412 RPEIVLDKSDCMVGYGQRISIQVKTTEGIKQSDIRITMYAPAFTTHGTSMNQRLVILGLVEVRNDVAPGQHKIVAEAPPS 491 (519)
Q Consensus 412 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~ 491 (519)
-|.|.+.. |..-..|++++|+-+--. ....+|. + + -...++.... ..++++++|..
T Consensus 2 ~P~I~~i~-P~~g~~G~~VtI~G~gFg---~~~~~V~-~--g-----------~~~a~v~s~s------dt~I~~~vP~~ 57 (81)
T cd02849 2 TPLIGHVG-PMMGKAGNTVTISGEGFG---SAPGTVY-F--G-----------TTAATVISWS------DTRIVVTVPNV 57 (81)
T ss_pred CCEEeeEc-CCCCCCCCEEEEEEECCC---CCCcEEE-E--C-----------CEEeEEEEEC------CCEEEEEeCCC
Confidence 48888886 888889999999755211 1112221 1 1 1333444321 36788999964
Q ss_pred CCcCCCcceEEEEEc-CCcCCccEEE
Q 042303 492 GVITPPGYYLLYVVY-KGVPSPGMWF 516 (519)
Q Consensus 492 ~~~~ppG~ymlf~~~-~gvPS~a~~v 516 (519)
++|.|-++|.. +|.=|.+.-.
T Consensus 58 ----~aG~~~V~V~~~~G~~Sn~~~f 79 (81)
T cd02849 58 ----PAGNYDVTVKTADGATSNGYNF 79 (81)
T ss_pred ----CCceEEEEEEeCCCcccCcEee
Confidence 78999999997 6887765443
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=75.09 E-value=57 Score=33.79 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=18.4
Q ss_pred EeeCCcEEEEeCC-ceEEeeCCCCe--EEE
Q 042303 189 LVTDGNLFIFSNN-RSILFDPKANR--VIR 215 (519)
Q Consensus 189 ~~~~G~Ifv~Gg~-~~~~yDp~t~~--w~~ 215 (519)
+..+++||+.+.. ...+||..+++ |..
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~ 91 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRV 91 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeee
Confidence 3457888877654 47789987765 543
No 80
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=74.12 E-value=34 Score=33.70 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=79.0
Q ss_pred EEEeeCCcEEEEeCC-ceEEeeCCCCeEEEEccCCCC-CCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCccc
Q 042303 187 VNLVTDGNLFIFSNN-RSILFDPKANRVIREYPVLTG-GSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFY 264 (519)
Q Consensus 187 ~~~~~~G~Ifv~Gg~-~~~~yDp~t~~w~~~~p~~p~-~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~ 264 (519)
+.+.+|++.++.+|+ ...+||..++.= -|-+.- +.+. .=++|-+ -.+|+-+..||-+ +
T Consensus 46 LeiTpdk~~LAaa~~qhvRlyD~~S~np---~Pv~t~e~h~k---NVtaVgF----------~~dgrWMyTgseD-g--- 105 (311)
T KOG0315|consen 46 LEITPDKKDLAAAGNQHVRLYDLNSNNP---NPVATFEGHTK---NVTAVGF----------QCDGRWMYTGSED-G--- 105 (311)
T ss_pred EEEcCCcchhhhccCCeeEEEEccCCCC---CceeEEeccCC---ceEEEEE----------eecCeEEEecCCC-c---
Confidence 456788888888776 577899998762 222210 1111 0122222 2489999988865 2
Q ss_pred ccccccccccCCCceEEEEecCCCCceEec-cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCC
Q 042303 265 YAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKE 343 (519)
Q Consensus 265 ~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t 343 (519)
+|.+.|+.. .+-+.+ .-+.+ + .+.++-|+-.=++.|-.+ | .+.+||-.+
T Consensus 106 -------------t~kIWdlR~--~~~qR~~~~~sp-V-n~vvlhpnQteLis~dqs-g------------~irvWDl~~ 155 (311)
T KOG0315|consen 106 -------------TVKIWDLRS--LSCQRNYQHNSP-V-NTVVLHPNQTELISGDQS-G------------NIRVWDLGE 155 (311)
T ss_pred -------------eEEEEeccC--cccchhccCCCC-c-ceEEecCCcceEEeecCC-C------------cEEEEEccC
Confidence 355666652 222222 11111 0 122345666666665432 2 468999999
Q ss_pred CCcceeeecCCCCcCCccceeeeEcCCCcEEEecCCCCC
Q 042303 344 KRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNTHD 382 (519)
Q Consensus 344 ~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~ 382 (519)
+ ..+.. .+|..-..-....+.|||+.++++-+.+.
T Consensus 156 ~---~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 156 N---SCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred C---ccccc-cCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 8 66432 33444344445667899999888865443
No 81
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.87 E-value=1.2e+02 Score=30.89 Aligned_cols=243 Identities=13% Similarity=0.166 Sum_probs=95.4
Q ss_pred CCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCC-CCCccccCCCCCCCc-cccceEEEcCCCcEEEE
Q 042303 56 ETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTC-DTCDWIEYPTALAEP-RWYSTQVTLPDGGFIVV 133 (519)
Q Consensus 56 ~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~-~~~~W~~~~~~m~~~-R~y~s~~~L~dG~V~vi 133 (519)
+.+.|+.+...++.-.....++-+.+-+++|-.. . +|-.. ...+|......+..+ .....++...+.+.||+
T Consensus 4 ~~~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~g----~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~iv 77 (302)
T PF14870_consen 4 SGNSWQQVSLPTDKPLLDVAFVDPNHGWAVGAYG----T--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIV 77 (302)
T ss_dssp SS--EEEEE-S-SS-EEEEEESSSS-EEEEETTT----E--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEE
T ss_pred cCCCcEEeecCCCCceEEEEEecCCEEEEEecCC----E--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEE
Confidence 3467877765555444344455457778887432 1 22221 157798764323332 22233444457889998
Q ss_pred cCCCCCceEEe--CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCceEEe-eCCC
Q 042303 134 GGRGAFSYEYI--PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNRSILF-DPKA 210 (519)
Q Consensus 134 GG~~~~~~E~y--P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~~~~y-Dp~t 210 (519)
|-.. .-+. -.-.+|. ..++.... +...| ....+.++.+.+++....... .-..
T Consensus 78 G~~g---~ll~T~DgG~tW~----~v~l~~~l----------------pgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG 133 (302)
T PF14870_consen 78 GEPG---LLLHTTDGGKTWE----RVPLSSKL----------------PGSPF-GITALGDGSAELAGDRGAIYRTTDGG 133 (302)
T ss_dssp EETT---EEEEESSTTSS-E----E----TT-----------------SS-EE-EEEEEETTEEEEEETT--EEEESSTT
T ss_pred cCCc---eEEEecCCCCCcE----EeecCCCC----------------CCCee-EEEEcCCCcEEEEcCCCcEEEeCCCC
Confidence 7421 1111 2223453 22211110 00001 123445667777765543322 2234
Q ss_pred CeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCc
Q 042303 211 NRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPV 290 (519)
Q Consensus 211 ~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~ 290 (519)
.+|........ ++ +..+. ...+|++++++-.. .. ....|+. ...
T Consensus 134 ~tW~~~~~~~~---------gs--~~~~~------r~~dG~~vavs~~G--~~---------------~~s~~~G--~~~ 177 (302)
T PF14870_consen 134 KTWQAVVSETS---------GS--INDIT------RSSDGRYVAVSSRG--NF---------------YSSWDPG--QTT 177 (302)
T ss_dssp SSEEEEE-S---------------EEEEE------E-TTS-EEEEETTS--SE---------------EEEE-TT---SS
T ss_pred CCeeEcccCCc---------ce--eEeEE------ECCCCcEEEEECcc--cE---------------EEEecCC--Ccc
Confidence 57864222111 11 11110 12388888887442 11 1123333 356
Q ss_pred eEeccCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCccce--eeeEc
Q 042303 291 WKKEMMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHS--VSVLL 368 (519)
Q Consensus 291 W~~~~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs--~a~Ll 368 (519)
|+....+..|..-++..-+|+.++++. .. |. ..+....+.+++|+.-. .++....+. ...-.
T Consensus 178 w~~~~r~~~~riq~~gf~~~~~lw~~~-~G-g~-------------~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~ 241 (302)
T PF14870_consen 178 WQPHNRNSSRRIQSMGFSPDGNLWMLA-RG-GQ-------------IQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYR 241 (302)
T ss_dssp -EEEE--SSS-EEEEEE-TTS-EEEEE-TT-TE-------------EEEEE-TTEEEEE---B--TTSS--S-EEEEEES
T ss_pred ceEEccCccceehhceecCCCCEEEEe-CC-cE-------------EEEccCCCCcccccccc-CCcccCceeeEEEEec
Confidence 988866555655566667999998865 21 10 11222233344787622 233223232 22345
Q ss_pred CCCcEEEecCCC
Q 042303 369 PDGKVLIAGSNT 380 (519)
Q Consensus 369 pdG~V~v~GG~~ 380 (519)
+++.|+++||..
T Consensus 242 ~~~~~wa~gg~G 253 (302)
T PF14870_consen 242 PPNEIWAVGGSG 253 (302)
T ss_dssp SSS-EEEEESTT
T ss_pred CCCCEEEEeCCc
Confidence 789999999874
No 82
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.69 E-value=1.6e+02 Score=31.74 Aligned_cols=202 Identities=14% Similarity=0.158 Sum_probs=106.0
Q ss_pred CCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCcc-ccCCCCCCCccccceEEEcCCCcEEEEcCCCCCceEEe-
Q 042303 67 TDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDW-IEYPTALAEPRWYSTQVTLPDGGFIVVGGRGAFSYEYI- 144 (519)
Q Consensus 67 ~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W-~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~~~~E~y- 144 (519)
+...+....+.+||+.++.|..+ ..+++||......- ..+.. + .-+-.+++.-++|+.++.|+.+ .++-+|
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s~D---~tiriwd~~~~~~~~~~l~g-H--~~~v~~~~f~p~g~~i~Sgs~D-~tvriWd 274 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGSDD---KTLRIWDLKDDGRNLKTLKG-H--STYVTSVAFSPDGNLLVSGSDD-GTVRIWD 274 (456)
T ss_pred cccceeeeEECCCCcEEEEecCC---ceEEEeeccCCCeEEEEecC-C--CCceEEEEecCCCCEEEEecCC-CcEEEEe
Confidence 45567777888999988877654 67888987312121 11111 2 2222455666688777777765 567777
Q ss_pred CCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCCc--eEEeeCCCCeE--EEEccCC
Q 042303 145 PPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNNR--SILFDPKANRV--IREYPVL 220 (519)
Q Consensus 145 P~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~--~~~yDp~t~~w--~~~~p~~ 220 (519)
..+.+ ....+....+. . -.+..-.+|++++.+..+ ..+||..+..- .+.+
T Consensus 275 ~~~~~------~~~~l~~hs~~---i--------------s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--- 328 (456)
T KOG0266|consen 275 VRTGE------CVRKLKGHSDG---I--------------SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL--- 328 (456)
T ss_pred ccCCe------EEEeeeccCCc---e--------------EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc---
Confidence 44431 12222111110 0 012233588888888654 56799998772 1222
Q ss_pred CCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceEEEEecCC--CCceEeccCCc
Q 042303 221 TGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEP--NPVWKKEMMPT 298 (519)
Q Consensus 221 p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~--~~~W~~~~M~~ 298 (519)
.+....-+ -..+.. ..+++.++++..+ +.+..+|+... ...|......
T Consensus 329 ~~~~~~~~--~~~~~f----------sp~~~~ll~~~~d-----------------~~~~~w~l~~~~~~~~~~~~~~~- 378 (456)
T KOG0266|consen 329 SGAENSAP--VTSVQF----------SPNGKYLLSASLD-----------------RTLKLWDLRSGKSVGTYTGHSNL- 378 (456)
T ss_pred cCCCCCCc--eeEEEE----------CCCCcEEEEecCC-----------------CeEEEEEccCCcceeeecccCCc-
Confidence 21111001 112221 1367777766543 12334454421 1123222221
Q ss_pred ceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCC
Q 042303 299 RRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEK 344 (519)
Q Consensus 299 ~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~ 344 (519)
.|.....+..++|+..+.|.... .+++||+.+.
T Consensus 379 ~~~~~~~~~~~~~~~i~sg~~d~-------------~v~~~~~~s~ 411 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKLIYSGSEDG-------------SVYVWDSSSG 411 (456)
T ss_pred ceeEecccccCCCCeEEEEeCCc-------------eEEEEeCCcc
Confidence 25554545567888888877542 5789999875
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=70.38 E-value=1.2e+02 Score=30.13 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=40.5
Q ss_pred cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCC--CCcCCccceeeeEcCCCc
Q 042303 295 MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAP--TTIPRMYHSVSVLLPDGK 372 (519)
Q Consensus 295 ~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~--~~~~R~yhs~a~LlpdG~ 372 (519)
.||..-..+ -+-|+-.+||.||... .+..||-.|+. .+.. -...---|++- .-|||.
T Consensus 222 k~P~nV~SA--SL~P~k~~fVaGged~-------------~~~kfDy~Tge-----Ei~~~nkgh~gpVhcVr-FSPdGE 280 (334)
T KOG0278|consen 222 KMPCNVESA--SLHPKKEFFVAGGEDF-------------KVYKFDYNTGE-----EIGSYNKGHFGPVHCVR-FSPDGE 280 (334)
T ss_pred cCccccccc--cccCCCceEEecCcce-------------EEEEEeccCCc-----eeeecccCCCCceEEEE-ECCCCc
Confidence 666543332 3679999999999752 35678877771 1111 11111124333 469999
Q ss_pred EEEecCCCC
Q 042303 373 VLIAGSNTH 381 (519)
Q Consensus 373 V~v~GG~~~ 381 (519)
+|..|+..+
T Consensus 281 ~yAsGSEDG 289 (334)
T KOG0278|consen 281 LYASGSEDG 289 (334)
T ss_pred eeeccCCCc
Confidence 999999765
No 84
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=67.93 E-value=16 Score=35.93 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=36.6
Q ss_pred eeccCCeEEEecCCCCCCceEEE-EeCCCCCccccCCCCCCCcc----ccceEEEcCCCcEEE
Q 042303 75 GLTVDGHLVGTGGYQGGANTVRY-LWTCDTCDWIEYPTALAEPR----WYSTQVTLPDGGFIV 132 (519)
Q Consensus 75 ~~l~dG~llv~GG~~~g~~~v~~-ydp~~~~~W~~~~~~m~~~R----~y~s~~~L~dG~V~v 132 (519)
..+.+|+++++....++...+.+ +...+..+|..... +...- .|++++.+.||+|+|
T Consensus 214 ~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~-i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 214 VRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKT-IDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEE-EEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEE-EeCCCCCcEECCeeEEeCCCcCCC
Confidence 34678999988874333333333 22222678986543 44333 699999999999987
No 85
>PTZ00421 coronin; Provisional
Probab=66.58 E-value=2e+02 Score=31.42 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=15.4
Q ss_pred CcEEEEeCCc--eEEeeCCCCeEE
Q 042303 193 GNLFIFSNNR--SILFDPKANRVI 214 (519)
Q Consensus 193 G~Ifv~Gg~~--~~~yDp~t~~w~ 214 (519)
+++++.|+.+ ..+||..+++-.
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAV 161 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEE
Confidence 4677777754 568999887643
No 86
>PTZ00420 coronin; Provisional
Probab=65.23 E-value=1.7e+02 Score=32.71 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=45.5
Q ss_pred eEEEEECCCCcEE-ECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccc-cceEE-Ec
Q 042303 49 HSVLFDIETAKLK-PLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRW-YSTQV-TL 125 (519)
Q Consensus 49 ~~~~yDp~t~~w~-~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~-y~s~~-~L 125 (519)
...+||..+++-. .+. ... .......-+||.++++++.+ +.+++||+. +.+ .+. .+..... -.+.+ -+
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~-~V~SlswspdG~lLat~s~D---~~IrIwD~R-sg~--~i~-tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPK-KLSSLKWNIKGNLLSGTCVG---KHMHIIDPR-KQE--IAS-SFHIHDGGKNTKNIWI 219 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCC-cEEEEEECCCCCEEEEEecC---CEEEEEECC-CCc--EEE-EEecccCCceeEEEEe
Confidence 3457898877532 111 111 12233455799999988743 579999997 432 111 1211110 01111 11
Q ss_pred ----CCCcEEEEcCCCC---CceEEe
Q 042303 126 ----PDGGFIVVGGRGA---FSYEYI 144 (519)
Q Consensus 126 ----~dG~V~viGG~~~---~~~E~y 144 (519)
+|+..++.+|.+. ..+-+|
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 5777777777654 356677
No 87
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=65.16 E-value=19 Score=37.44 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=37.0
Q ss_pred ecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeeeEcCCCcEEEecCCCC
Q 042303 308 LPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGSNTH 381 (519)
Q Consensus 308 LpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~ 381 (519)
-|+|+.++.|+.+. ++-+||+.|. +.+..+.--+..-.+...-|||+.++.|+-.+
T Consensus 124 sp~g~~l~tGsGD~-------------TvR~WD~~Te-----Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 124 SPTGSRLVTGSGDT-------------TVRLWDLDTE-----TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred cCCCceEEecCCCc-------------eEEeeccCCC-----CcceeecCCccEEEEEEECCCcchhhccccCC
Confidence 47999999987542 6789999987 22222222222333445679999999998644
No 88
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=63.84 E-value=86 Score=32.92 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=47.5
Q ss_pred eeEEEEECCCCcEE-ECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCC-CccccceEEEc
Q 042303 48 AHSVLFDIETAKLK-PLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALA-EPRWYSTQVTL 125 (519)
Q Consensus 48 ~~~~~yDp~t~~w~-~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~-~~R~y~s~~~L 125 (519)
....+||..|++-. .+. +.-.|-+..+-.||.++++.-. .++++++||. +.+-..-. |. .+---.-+.-|
T Consensus 154 n~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr-~~~~v~e~--~~heG~k~~Raifl 225 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCK---DKKVRVIDPR-RGTVVSEG--VAHEGAKPARAIFL 225 (472)
T ss_pred ceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecc---cceeEEEcCC-CCcEeeec--ccccCCCcceeEEe
Confidence 44557888777642 222 2223334455567877776533 3789999998 65533211 22 22223446778
Q ss_pred CCCcEEEEcCC
Q 042303 126 PDGGFIVVGGR 136 (519)
Q Consensus 126 ~dG~V~viGG~ 136 (519)
.+|+++..|=+
T Consensus 226 ~~g~i~tTGfs 236 (472)
T KOG0303|consen 226 ASGKIFTTGFS 236 (472)
T ss_pred ccCceeeeccc
Confidence 89998888754
No 89
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.50 E-value=1.4e+02 Score=30.56 Aligned_cols=97 Identities=14% Similarity=0.308 Sum_probs=53.2
Q ss_pred CCcEEEEeC---CceEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCccccccc
Q 042303 192 DGNLFIFSN---NRSILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAED 268 (519)
Q Consensus 192 ~G~Ifv~Gg---~~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 268 (519)
++.+.+|+- .-+.+||+.+.+-.+.+.+-+ .|.| .|.++.-+ +|+.|..==. ++.
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~--gRHF--yGHg~fs~-----------dG~~LytTEn---d~~---- 73 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP--GRHF--YGHGVFSP-----------DGRLLYTTEN---DYE---- 73 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC--CCEE--ecCEEEcC-----------CCCEEEEecc---ccC----
Confidence 566666763 347789999988655555422 3554 57777643 6666664211 111
Q ss_pred ccccccCCCceEEEEecCCCCceEec-cCC-cceeeceeEEecCC-cEEEEcC
Q 042303 269 KKQFWPALQDCGRIRITEPNPVWKKE-MMP-TRRVMGDMTILPTG-DVLLVNG 318 (519)
Q Consensus 269 ~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~-~~R~~~~~vvLpdG-~V~viGG 318 (519)
..---+..||.. ..++.. ..+ ..--=|...++||| .+.|.+|
T Consensus 74 -----~g~G~IgVyd~~---~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 74 -----TGRGVIGVYDAA---RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred -----CCcEEEEEEECc---CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 011123455543 344443 322 23344677889999 5555555
No 90
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=62.86 E-value=8.8 Score=24.59 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=12.3
Q ss_pred eeeeeCCCCEEEEEeccccc
Q 042303 2 HAILLPKVNQVLMYDATVWK 21 (519)
Q Consensus 2 h~~ll~~~g~vl~~~~~~~g 21 (519)
|+..|..+|+|+.||..+.|
T Consensus 10 ht~al~~~g~v~~wG~n~~G 29 (30)
T PF13540_consen 10 HTCALTSDGEVYCWGDNNYG 29 (30)
T ss_dssp EEEEEE-TTEEEEEE--TTS
T ss_pred EEEEEEcCCCEEEEcCCcCC
Confidence 55444499999999986643
No 91
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=61.90 E-value=54 Score=29.10 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=51.3
Q ss_pred CCCCceecCC---CC---CccccCceEEEEEEeccccccceEEEEEE-eCCcccccCCCCC--ceEEeeeeeeeecCCCC
Q 042303 410 HLRPEIVLDK---SD---CMVGYGQRISIQVKTTEGIKQSDIRITMY-APAFTTHGTSMNQ--RLVILGLVEVRNDVAPG 480 (519)
Q Consensus 410 ~~RP~i~~~~---~p---~~~~~g~~~~v~~~~~~~~~~~~~~v~l~-~~~~~THs~n~~Q--R~v~L~~~~~~~~~~~g 480 (519)
...|+|+... .| ..+..|+.|.+++...+ +..+.++.+- -.-|-.|+-...- =..+..|...- +...|
T Consensus 12 ~~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d--~~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~-~~~~g 88 (132)
T PF15418_consen 12 TEKPVITLNEIGAFPENCKVATRGDDIHFEADISD--NSAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDY-DIYGG 88 (132)
T ss_pred cCCCEEEeeecccCCCCCeEEecCCcEEEEEEEEc--ccceeEEEEEEecCcCcccccccccccccCcEEEEEE-cccCC
Confidence 3578787662 12 44778999888877543 3344444332 1223333332211 12222222110 01112
Q ss_pred ----cEEEEEEcCCCCCcCCCcceEEEEE--c-CC-cCCccEEEEe
Q 042303 481 ----QHKIVAEAPPSGVITPPGYYLLYVV--Y-KG-VPSPGMWFQI 518 (519)
Q Consensus 481 ----~~~~~v~~P~~~~~~ppG~ymlf~~--~-~g-vPS~a~~v~i 518 (519)
.-...+++|++ |+||-|-+++. + .| .=.++.-|+|
T Consensus 89 ~~~~~~h~~i~IPa~---a~~G~YH~~i~VtD~~Gn~~~~~~~i~I 131 (132)
T PF15418_consen 89 KKNYDFHEHIDIPAD---APAGDYHFMITVTDAAGNQTEEERSIKI 131 (132)
T ss_pred cccEeEEEeeeCCCC---CCCcceEEEEEEEECCCCEEEEEEEEEE
Confidence 23455688988 89999987775 3 45 3333555554
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=61.21 E-value=3.7e+02 Score=32.55 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=36.1
Q ss_pred eEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCC----------cCCcc--ceeeeEcCCCc
Q 042303 305 MTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTT----------IPRMY--HSVSVLLPDGK 372 (519)
Q Consensus 305 ~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~----------~~R~y--hs~a~LlpdG~ 372 (519)
.++-+||+|||....+ ..+.+||+++. ..+.++..- ..+.. +++ .+-+||+
T Consensus 809 vavd~dG~LYVADs~N-------------~rIrviD~~tg---~v~tiaG~G~~G~~dG~~~~a~l~~P~GI-avd~dG~ 871 (1057)
T PLN02919 809 VLCAKDGQIYVADSYN-------------HKIKKLDPATK---RVTTLAGTGKAGFKDGKALKAQLSEPAGL-ALGENGR 871 (1057)
T ss_pred eeEeCCCcEEEEECCC-------------CEEEEEECCCC---eEEEEeccCCcCCCCCcccccccCCceEE-EEeCCCC
Confidence 3456899999986432 25789999887 555443211 11111 233 3468999
Q ss_pred EEEecCCC
Q 042303 373 VLIAGSNT 380 (519)
Q Consensus 373 V~v~GG~~ 380 (519)
|||+-.+.
T Consensus 872 lyVaDt~N 879 (1057)
T PLN02919 872 LFVADTNN 879 (1057)
T ss_pred EEEEECCC
Confidence 99986543
No 93
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=60.79 E-value=85 Score=31.07 Aligned_cols=90 Identities=17% Similarity=0.077 Sum_probs=49.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcEEEEcCCCCCceEEe-CCCCCCCCcccccccchhccccccCCcc
Q 042303 94 TVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGAFSYEYI-PPQGQSNKQSIYLPLLRETHDQLAGHFG 172 (519)
Q Consensus 94 ~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~~~~E~y-P~~~~w~~~~~~~p~l~~t~~~~~g~~~ 172 (519)
.||++|-. +.+=. - .|..+.---++.+-.||+++++- .+.++-++ ++.-.-. +...+|....
T Consensus 166 tVRLWD~r-Tgt~v--~-sL~~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l-Ks~k~P~nV~---------- 228 (334)
T KOG0278|consen 166 TVRLWDHR-TGTEV--Q-SLEFNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL-KSYKMPCNVE---------- 228 (334)
T ss_pred ceEEEEec-cCcEE--E-EEecCCCCcceeeccCCCEEEEe--cCceeEEeccccccce-eeccCccccc----------
Confidence 45566654 33321 1 24444434466677899999884 22345565 4321000 1112232110
Q ss_pred cccccccccCccceEEEeeCCcEEEEeCCceE--EeeCCCCeE
Q 042303 173 TENFYRIENNLYPFVNLVTDGNLFIFSNNRSI--LFDPKANRV 213 (519)
Q Consensus 173 ~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~~~~--~yDp~t~~w 213 (519)
.+.+-|+-.+||.||.+.+ .||..|+.-
T Consensus 229 -------------SASL~P~k~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 229 -------------SASLHPKKEFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred -------------cccccCCCceEEecCcceEEEEEeccCCce
Confidence 2456678899999998754 689988863
No 94
>PRK04792 tolB translocation protein TolB; Provisional
Probab=60.02 E-value=81 Score=33.87 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=52.8
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
.-..+|..+++.+.+.... .........+||+.+++.....+...+..+|.. +.++..+.. ...++.+.+.-+||
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt~---~g~~~~~~~~SpDG 361 (448)
T PRK04792 287 EIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLTF---EGEQNLGGSITPDG 361 (448)
T ss_pred EEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEec---CCCCCcCeeECCCC
Confidence 3456799999988876432 122234566898866665443455678888887 666655431 22333344556798
Q ss_pred cEEEEcCCCCCceEE
Q 042303 129 GFIVVGGRGAFSYEY 143 (519)
Q Consensus 129 ~V~viGG~~~~~~E~ 143 (519)
+.++..........+
T Consensus 362 ~~l~~~~~~~g~~~I 376 (448)
T PRK04792 362 RSMIMVNRTNGKFNI 376 (448)
T ss_pred CEEEEEEecCCceEE
Confidence 777765543333333
No 95
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.46 E-value=94 Score=31.70 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=53.3
Q ss_pred eeEEEEECCCCcEEEC-ccCC-CcccCCCeeccCCeEEEec-CCC-CCCceEEEEeCCCCCccccCCCCCC-CccccceE
Q 042303 48 AHSVLFDIETAKLKPL-KIQT-DTWCSSGGLTVDGHLVGTG-GYQ-GGANTVRYLWTCDTCDWIEYPTALA-EPRWYSTQ 122 (519)
Q Consensus 48 ~~~~~yDp~t~~w~~l-~~~~-~~~c~~~~~l~dG~llv~G-G~~-~g~~~v~~ydp~~~~~W~~~~~~m~-~~R~y~s~ 122 (519)
.+..+||+.+++-... .... -.|...+++.+||++|.+= ... .+.-.+-+||.. .....+.. .. ..-.-|-.
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E-~~s~GIGPHel 104 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGE-FPSHGIGPHEL 104 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeE-ecCCCcChhhE
Confidence 4678999999987543 3333 3488888899999876653 221 234467789975 23433332 22 23344567
Q ss_pred EEcCCCcEEEE--cCC
Q 042303 123 VTLPDGGFIVV--GGR 136 (519)
Q Consensus 123 ~~L~dG~V~vi--GG~ 136 (519)
..++||+-+|| ||.
T Consensus 105 ~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 105 LLMPDGETLVVANGGI 120 (305)
T ss_pred EEcCCCCEEEEEcCCC
Confidence 78899966655 553
No 96
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=58.53 E-value=59 Score=32.77 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=48.7
Q ss_pred EEEecCCCCceEec-cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCC---C
Q 042303 281 RIRITEPNPVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPT---T 356 (519)
Q Consensus 281 ~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~---~ 356 (519)
.||+. +.+|... .=-..-+ ..+...+++-++++|.-. . ..........||.++. +|+.+... .
T Consensus 20 ~yd~~--~~qW~~~g~~i~G~V--~~l~~~~~~~Llv~G~ft-~-----~~~~~~~la~yd~~~~---~w~~~~~~~s~~ 86 (281)
T PF12768_consen 20 LYDTD--NSQWSSPGNGISGTV--TDLQWASNNQLLVGGNFT-L-----NGTNSSNLATYDFKNQ---TWSSLGGGSSNS 86 (281)
T ss_pred EEECC--CCEeecCCCCceEEE--EEEEEecCCEEEEEEeeE-E-----CCCCceeEEEEecCCC---eeeecCCccccc
Confidence 57766 7899986 2222222 223444555556666421 1 1112335789999999 99888763 3
Q ss_pred cCCccceeeeEcCCC-cEEEecCC
Q 042303 357 IPRMYHSVSVLLPDG-KVLIAGSN 379 (519)
Q Consensus 357 ~~R~yhs~a~LlpdG-~V~v~GG~ 379 (519)
++..-.+..+..-|+ +++++|..
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRS 110 (281)
T ss_pred CCCcEEEEEeeccCCceEEEecee
Confidence 554433444444465 57777764
No 97
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=58.51 E-value=75 Score=30.64 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=44.1
Q ss_pred ceEEEEecCCCCceEeccCCcceeeceeEEe-cCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCC
Q 042303 278 DCGRIRITEPNPVWKKEMMPTRRVMGDMTIL-PTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTT 356 (519)
Q Consensus 278 s~~~~d~~~~~~~W~~~~M~~~R~~~~~vvL-pdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~ 356 (519)
.+.++|+. +..-+....+. ..++++. ++|++|+..... ..++|+++. +++.+....
T Consensus 23 ~i~~~~~~--~~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~~---------------~~~~d~~~g---~~~~~~~~~ 79 (246)
T PF08450_consen 23 RIYRVDPD--TGEVEVIDLPG---PNGMAFDRPDGRLYVADSGG---------------IAVVDPDTG---KVTVLADLP 79 (246)
T ss_dssp EEEEEETT--TTEEEEEESSS---EEEEEEECTTSEEEEEETTC---------------EEEEETTTT---EEEEEEEEE
T ss_pred EEEEEECC--CCeEEEEecCC---CceEEEEccCCEEEEEEcCc---------------eEEEecCCC---cEEEEeecc
Confidence 45566664 23222224444 2233445 799999886532 256799999 887766552
Q ss_pred c---CCccceeeeEcCCCcEEEecCC
Q 042303 357 I---PRMYHSVSVLLPDGKVLIAGSN 379 (519)
Q Consensus 357 ~---~R~yhs~a~LlpdG~V~v~GG~ 379 (519)
. +.....-.++.+||++|++-..
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~ 105 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSG 105 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEEC
T ss_pred CCCcccCCCceEEEcCCCCEEEEecC
Confidence 1 2222223456799999998654
No 98
>PTZ00421 coronin; Provisional
Probab=58.10 E-value=2e+02 Score=31.39 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=31.0
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCc
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCD 105 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~ 105 (519)
..+||..+++-...-..+.........-+||.++++|+.+ +.+++||+. +.+
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D---g~IrIwD~r-sg~ 201 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD---KKLNIIDPR-DGT 201 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC---CEEEEEECC-CCc
Confidence 4578888765322111111122223445689999998854 579999997 443
No 99
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=56.35 E-value=91 Score=25.07 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=48.7
Q ss_pred CceecCCCCCccccCceEEEEEEeccccccceEEEEEEeCCcccccCCCCCceEEeeeeeeeecCCCCcEEEEEEcCCCC
Q 042303 413 PEIVLDKSDCMVGYGQRISIQVKTTEGIKQSDIRITMYAPAFTTHGTSMNQRLVILGLVEVRNDVAPGQHKIVAEAPPSG 492 (519)
Q Consensus 413 P~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~~ 492 (519)
|.|.+.. |..-..|++++|.-+--. ....+|. + + - ...++.... ...+++++|..
T Consensus 1 P~I~~i~-P~~g~pG~~VtI~G~gFg---~~~~~V~-~--g---------~--~~a~v~s~s------dt~I~~~VP~~- 55 (81)
T cd00604 1 PLIGSVG-PVMGKPGNTVTISGEGFG---STGGTVY-F--G---------G--TAAEVLSWS------DTSIVVEVPRV- 55 (81)
T ss_pred CeEeeEc-CCCCCCCCEEEEEEECCC---CCccEEE-E--C---------C--EEEEEEEEC------CCEEEEEeCCC-
Confidence 6787775 888889999999755111 1112221 1 1 1 223444421 36788999853
Q ss_pred CcCCCcceEEEEEc-CCcCCccEEEEe
Q 042303 493 VITPPGYYLLYVVY-KGVPSPGMWFQI 518 (519)
Q Consensus 493 ~~~ppG~ymlf~~~-~gvPS~a~~v~i 518 (519)
++|.|-+.|.. +|.=|.+--.++
T Consensus 56 ---~~g~~~i~V~~~~G~~Sn~~~f~~ 79 (81)
T cd00604 56 ---APGNYNISVTTVDGVTSNGYNFEV 79 (81)
T ss_pred ---CCCceEEEEEECCCcccCcEeEEE
Confidence 67999999986 898887655443
No 100
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=55.92 E-value=19 Score=35.37 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=48.2
Q ss_pred cCCCCceEec---cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCC--
Q 042303 285 TEPNPVWKKE---MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPR-- 359 (519)
Q Consensus 285 ~~~~~~W~~~---~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R-- 359 (519)
.+...+|+.. .++.+......+.+.||+++++.....+ +.+ +.+ .+ ..+.|.+|+.........
T Consensus 190 ~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------r~~-l~l-~~--S~D~g~tW~~~~~i~~~~~~ 258 (275)
T PF13088_consen 190 TDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG-------RSN-LSL-YV--SEDGGKTWSRPKTIDDGPNG 258 (275)
T ss_dssp SSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSST-------SEE-EEE-EE--ECTTCEEEEEEEEEEEEE-C
T ss_pred CCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCC-------CCc-eEE-EE--EeCCCCcCCccEEEeCCCCC
Confidence 3446789863 6777777767677899999999873211 111 122 22 233466998654433322
Q ss_pred -ccceeeeEcCCCcEEE
Q 042303 360 -MYHSVSVLLPDGKVLI 375 (519)
Q Consensus 360 -~yhs~a~LlpdG~V~v 375 (519)
...+..+.++||+|+|
T Consensus 259 ~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 259 DSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEEEEETTEEEE
T ss_pred cEECCeeEEeCCCcCCC
Confidence 4445667789999986
No 101
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=53.98 E-value=13 Score=30.62 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=35.3
Q ss_pred eeeeCCC-CEEEEEecccccccCcCCCCCCCCccccCCCCCCCccceeEEEEECCCCcEEECccCCCcccCCC-eeccCC
Q 042303 3 AILLPKV-NQVLMYDATVWKISKIPLPQEKMPCRVIDPKTNEVDCWAHSVLFDIETAKLKPLKIQTDTWCSSG-GLTVDG 80 (519)
Q Consensus 3 ~~ll~~~-g~vl~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~-~~l~dG 80 (519)
..+. ++ |+||+-+.+.. +.. . ++.+ .+++.++...-..|||+|++.+-+. .+...+.+ ++-.|+
T Consensus 3 ldv~-~~~g~vYfTdsS~~----~~~--~--~~~~---~~le~~~~GRll~ydp~t~~~~vl~--~~L~fpNGVals~d~ 68 (89)
T PF03088_consen 3 LDVD-QDTGTVYFTDSSSR----YDR--R--DWVY---DLLEGRPTGRLLRYDPSTKETTVLL--DGLYFPNGVALSPDE 68 (89)
T ss_dssp EEE--TTT--EEEEES-SS------T--T--GHHH---HHHHT---EEEEEEETTTTEEEEEE--EEESSEEEEEE-TTS
T ss_pred eeEe-cCCCEEEEEeCccc----cCc--c--ceee---eeecCCCCcCEEEEECCCCeEEEeh--hCCCccCeEEEcCCC
Confidence 3565 77 99999988651 111 0 1111 3455667777888999999987763 23334444 445577
Q ss_pred e-EEEe
Q 042303 81 H-LVGT 85 (519)
Q Consensus 81 ~-llv~ 85 (519)
. |+|+
T Consensus 69 ~~vlv~ 74 (89)
T PF03088_consen 69 SFVLVA 74 (89)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 6 4443
No 102
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=53.84 E-value=3e+02 Score=29.24 Aligned_cols=77 Identities=12% Similarity=-0.026 Sum_probs=41.2
Q ss_pred EECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCC-----ccccCCCCCCCcc-ccceEEEcC
Q 042303 53 FDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTC-----DWIEYPTALAEPR-WYSTQVTLP 126 (519)
Q Consensus 53 yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~-----~W~~~~~~m~~~R-~y~s~~~L~ 126 (519)
+|.....|+++.......-.+.....||.++++|... .+..-+-. .. +|.+.. ++..+ -..++....
T Consensus 265 ~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G----~l~~S~d~-G~~~~~~~f~~~~--~~~~~~~l~~v~~~~ 337 (398)
T PLN00033 265 WEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG----GLYVSKGT-GLTEEDFDFEEAD--IKSRGFGILDVGYRS 337 (398)
T ss_pred cCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc----eEEEecCC-CCcccccceeecc--cCCCCcceEEEEEcC
Confidence 3444445887765554444555667899999887532 11111111 23 344432 22222 233444556
Q ss_pred CCcEEEEcCC
Q 042303 127 DGGFIVVGGR 136 (519)
Q Consensus 127 dG~V~viGG~ 136 (519)
|+.++++|..
T Consensus 338 d~~~~a~G~~ 347 (398)
T PLN00033 338 KKEAWAAGGS 347 (398)
T ss_pred CCcEEEEECC
Confidence 8889888865
No 103
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=52.64 E-value=24 Score=37.12 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=69.6
Q ss_pred CCCEEEEEecccccc-cCcCCCCCCC----CccccCC-CCCCCccceeEE-EEECCCCcEEECccCCCcccCCCeeccCC
Q 042303 8 KVNQVLMYDATVWKI-SKIPLPQEKM----PCRVIDP-KTNEVDCWAHSV-LFDIETAKLKPLKIQTDTWCSSGGLTVDG 80 (519)
Q Consensus 8 ~~g~vl~~~~~~~g~-~~~~~~~g~~----~~~~~~~-~~~~~~~~~~~~-~yDp~t~~w~~l~~~~~~~c~~~~~l~dG 80 (519)
-||.|.+|+-++.-+ ..+ .|-+ .-+|.|. +.+...|+.++- +||..|++=--+..-+..--...++-+||
T Consensus 239 ~Dgtvklw~~~~e~~l~~l---~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 239 ADGTVKLWKLSQETPLQDL---EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred cCCceeeeccCCCcchhhh---hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence 378888887654211 111 0100 1233454 666666776654 68887765433333333333345678899
Q ss_pred eEEEecCCCCCCceEEEEeCCCCCcccc-CCCCCCCccccceEEEcCCCcEEEEcCCCCCceEEe
Q 042303 81 HLVGTGGYQGGANTVRYLWTCDTCDWIE-YPTALAEPRWYSTQVTLPDGGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 81 ~llv~GG~~~g~~~v~~ydp~~~~~W~~-~~~~m~~~R~y~s~~~L~dG~V~viGG~~~~~~E~y 144 (519)
.|+.+||.+. -.+++|.. +.+-.- +.. .-+--.++.--|||..++.||.++ ++.+|
T Consensus 316 SL~~tGGlD~---~~RvWDlR-tgr~im~L~g---H~k~I~~V~fsPNGy~lATgs~Dn-t~kVW 372 (459)
T KOG0272|consen 316 SLAATGGLDS---LGRVWDLR-TGRCIMFLAG---HIKEILSVAFSPNGYHLATGSSDN-TCKVW 372 (459)
T ss_pred ceeeccCccc---hhheeecc-cCcEEEEecc---cccceeeEeECCCceEEeecCCCC-cEEEe
Confidence 9999999762 23556655 333211 111 112234566668999999999874 44444
No 104
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.59 E-value=86 Score=31.57 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=56.5
Q ss_pred ceEEEEecCCCCceEeccCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCc
Q 042303 278 DCGRIRITEPNPVWKKEMMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTI 357 (519)
Q Consensus 278 s~~~~d~~~~~~~W~~~~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~ 357 (519)
...++||. +.+-+..++...-.-|..++=|||..+|+-+.. .+.+.||++-.-++|..-..+..
T Consensus 84 aiGhLdP~--tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~--------------aI~R~dpkt~evt~f~lp~~~a~ 147 (353)
T COG4257 84 AIGHLDPA--TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL--------------AIGRLDPKTLEVTRFPLPLEHAD 147 (353)
T ss_pred cceecCCC--CCceEEEecCCCCCCceEEECCCCCeeEecCcc--------------eeEEecCcccceEEeecccccCC
Confidence 34566665 344333366666556676788999999976532 35789999986667765444433
Q ss_pred CCccceeeeEcCCCcEEEecCC
Q 042303 358 PRMYHSVSVLLPDGKVLIAGSN 379 (519)
Q Consensus 358 ~R~yhs~a~LlpdG~V~v~GG~ 379 (519)
.-+ -++++-++|+++..|-.
T Consensus 148 ~nl--et~vfD~~G~lWFt~q~ 167 (353)
T COG4257 148 ANL--ETAVFDPWGNLWFTGQI 167 (353)
T ss_pred Ccc--cceeeCCCccEEEeecc
Confidence 332 46889999999999864
No 105
>PRK03629 tolB translocation protein TolB; Provisional
Probab=49.34 E-value=1.5e+02 Score=31.59 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=47.7
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCc
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGG 129 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~ 129 (519)
-.++|.++++.+.+..... ........+||+.+++.....+...++.+|.. +.+-..+.. ...........+||+
T Consensus 269 I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~~~lt~---~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 269 LYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAPQRITW---EGSQNQDADVSSDGK 343 (429)
T ss_pred EEEEECCCCCEEEccCCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCeEEeec---CCCCccCEEECCCCC
Confidence 4468999998887754322 23345677899877665443344567777876 444333321 111122344567998
Q ss_pred EEEEcCCC
Q 042303 130 FIVVGGRG 137 (519)
Q Consensus 130 V~viGG~~ 137 (519)
.++.....
T Consensus 344 ~Ia~~~~~ 351 (429)
T PRK03629 344 FMVMVSSN 351 (429)
T ss_pred EEEEEEcc
Confidence 77765443
No 106
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=49.29 E-value=38 Score=35.30 Aligned_cols=67 Identities=28% Similarity=0.296 Sum_probs=46.9
Q ss_pred eccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCC-CccccceEEEcCCCcEEEEcCCCCCceEEe-CCCCCC
Q 042303 76 LTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALA-EPRWYSTQVTLPDGGFIVVGGRGAFSYEYI-PPQGQS 150 (519)
Q Consensus 76 ~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~-~~R~y~s~~~L~dG~V~viGG~~~~~~E~y-P~~~~w 150 (519)
+-++|+.++.|+ |..+++++|+. +.+ +.-. +. ...|-.+++--|||+.++.|-.+ .++-+| |++++-
T Consensus 123 fsp~g~~l~tGs---GD~TvR~WD~~-TeT--p~~t-~KgH~~WVlcvawsPDgk~iASG~~d-g~I~lwdpktg~~ 191 (480)
T KOG0271|consen 123 FSPTGSRLVTGS---GDTTVRLWDLD-TET--PLFT-CKGHKNWVLCVAWSPDGKKIASGSKD-GSIRLWDPKTGQQ 191 (480)
T ss_pred ecCCCceEEecC---CCceEEeeccC-CCC--ccee-ecCCccEEEEEEECCCcchhhccccC-CeEEEecCCCCCc
Confidence 446888888886 45789999987 442 2211 22 35677788888999999877654 467788 887743
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=49.04 E-value=2.4e+02 Score=30.08 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=66.1
Q ss_pred cceEEEeeCCcEEEEeCCc--eEEeeCCCCeEEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCC
Q 042303 184 YPFVNLVTDGNLFIFSNNR--SILFDPKANRVIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWD 261 (519)
Q Consensus 184 yp~~~~~~~G~Ifv~Gg~~--~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~ 261 (519)
|..+..-+||-||..|-.+ ..+||.+...- +...|+ . +|..--+. -..+|--++++--+
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~---~a~Fpg--h----t~~vk~i~--------FsENGY~Lat~add-- 410 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKFPG--H----TGPVKAIS--------FSENGYWLATAADD-- 410 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccc---cccCCC--C----CCceeEEE--------eccCceEEEEEecC--
Confidence 4445566899999998765 45799887652 333332 1 11111110 11256555554221
Q ss_pred cccccccccccccCCCceEEEEecCCCCceEeccCCcceeeceeE-EecCCcEEEEcCcCCCCCCccCCCCCccccEEEe
Q 042303 262 AFYYAEDKKQFWPALQDCGRIRITEPNPVWKKEMMPTRRVMGDMT-ILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYK 340 (519)
Q Consensus 262 ~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~~M~~~R~~~~~v-vLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~Yd 340 (519)
.++.++|+.. ........+.... ...++ .=..|+.++++|.+ .++.+|+
T Consensus 411 ---------------~~V~lwDLRK-l~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~-------------l~Vy~~~ 460 (506)
T KOG0289|consen 411 ---------------GSVKLWDLRK-LKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSD-------------LQVYICK 460 (506)
T ss_pred ---------------CeEEEEEehh-hcccceeeccccc-cceeEEEcCCCCeEEeecce-------------eEEEEEe
Confidence 2366788863 1122222333322 11222 22468889988753 3678889
Q ss_pred CCCCCcceeeecCCCC
Q 042303 341 TKEKRHHRFQELAPTT 356 (519)
Q Consensus 341 P~t~~g~~W~~~~~~~ 356 (519)
-.+. +|+.+...+
T Consensus 461 k~~k---~W~~~~~~~ 473 (506)
T KOG0289|consen 461 KKTK---SWTEIKELA 473 (506)
T ss_pred cccc---cceeeehhh
Confidence 8898 999887654
No 108
>PRK03629 tolB translocation protein TolB; Provisional
Probab=48.38 E-value=1.6e+02 Score=31.43 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=49.3
Q ss_pred EEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcE
Q 042303 51 VLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGF 130 (519)
Q Consensus 51 ~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V 130 (519)
..+|+.+++.+.+... ...+......+||+.+++....++...+.++|.. +.++..+.. .. .......-+||+.
T Consensus 314 y~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~-~g~~~~Lt~-~~---~~~~p~~SpDG~~ 387 (429)
T PRK03629 314 YKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-TGGVQVLTD-TF---LDETPSIAPNGTM 387 (429)
T ss_pred EEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECC-CCCeEEeCC-CC---CCCCceECCCCCE
Confidence 3457777777666432 1223345567899887776554455678889987 676665543 11 1112334479998
Q ss_pred EEEcCCCC
Q 042303 131 IVVGGRGA 138 (519)
Q Consensus 131 ~viGG~~~ 138 (519)
++....++
T Consensus 388 i~~~s~~~ 395 (429)
T PRK03629 388 VIYSSSQG 395 (429)
T ss_pred EEEEEcCC
Confidence 88766543
No 109
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=48.36 E-value=2.1e+02 Score=29.71 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=49.0
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
...++|..+++.+.+...... -......+||+.+++.....+...+..+|.. +.++..+.. ...+......-+||
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~-~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~~~~l~~---~~~~~~~~~~spdg 333 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGI-DTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGEVRRLTF---RGGYNASPSWSPDG 333 (417)
T ss_pred cEEEEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEeec---CCCCccCeEECCCC
Confidence 345678888888777543211 1122456788766655443344578888877 666654431 12223334445688
Q ss_pred cEEEEcCCCC
Q 042303 129 GFIVVGGRGA 138 (519)
Q Consensus 129 ~V~viGG~~~ 138 (519)
+.+++.....
T Consensus 334 ~~i~~~~~~~ 343 (417)
T TIGR02800 334 DLIAFVHREG 343 (417)
T ss_pred CEEEEEEccC
Confidence 8888766544
No 110
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=47.01 E-value=1.5e+02 Score=29.74 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=13.4
Q ss_pred EEEeeCCcEEEEeCCce
Q 042303 187 VNLVTDGNLFIFSNNRS 203 (519)
Q Consensus 187 ~~~~~~G~Ifv~Gg~~~ 203 (519)
+..-|+||.|..||.+.
T Consensus 293 vAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDG 309 (327)
T ss_pred eEECCCCcccccCCCCc
Confidence 44568999999999753
No 111
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=45.77 E-value=17 Score=27.07 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=12.6
Q ss_pred eeEcCCCcEEEecCCC
Q 042303 365 SVLLPDGKVLIAGSNT 380 (519)
Q Consensus 365 a~LlpdG~V~v~GG~~ 380 (519)
..++|||||+++|...
T Consensus 6 ~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 6 VAVQSDGKILVAGYVD 21 (55)
T ss_pred EEECCCCcEEEEEEee
Confidence 3457999999999653
No 112
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=44.61 E-value=3.7e+02 Score=27.70 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=127.0
Q ss_pred EEEEECCCCc--EEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCC-CCCccccCCCCCCCccccceEEEcC
Q 042303 50 SVLFDIETAK--LKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTC-DTCDWIEYPTALAEPRWYSTQVTLP 126 (519)
Q Consensus 50 ~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~-~~~~W~~~~~~m~~~R~y~s~~~L~ 126 (519)
...+|+.+.+ |+.........+++.....||+|++.... + ...+||+. .+..|..... .. .+|.. .++..
T Consensus 80 i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~--g--~~y~ld~~~G~~~W~~~~~-~~-~~~~~-~~v~~ 152 (370)
T COG1520 80 IFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD--G--KLYALDASTGTLVWSRNVG-GS-PYYAS-PPVVG 152 (370)
T ss_pred EEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc--c--eEEEEECCCCcEEEEEecC-CC-eEEec-CcEEc
Confidence 4467888876 76543322346777788889998775432 2 78899984 2567876543 22 56543 44555
Q ss_pred CCcEEEEcCCCCCceEEe-CCCC--CCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEeCC--
Q 042303 127 DGGFIVVGGRGAFSYEYI-PPQG--QSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFSNN-- 201 (519)
Q Consensus 127 dG~V~viGG~~~~~~E~y-P~~~--~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~Gg~-- 201 (519)
|+.||+.-. + ..+-.. +.++ .|.... ..+ +.... . ......+|.+|+-...
T Consensus 153 ~~~v~~~s~-~-g~~~al~~~tG~~~W~~~~-~~~-~~~~~-----------------~---~~~~~~~~~vy~~~~~~~ 208 (370)
T COG1520 153 DGTVYVGTD-D-GHLYALNADTGTLKWTYET-PAP-LSLSI-----------------Y---GSPAIASGTVYVGSDGYD 208 (370)
T ss_pred CcEEEEecC-C-CeEEEEEccCCcEEEEEec-CCc-ccccc-----------------c---cCceeecceEEEecCCCc
Confidence 999998751 1 112222 3332 242100 000 10000 0 0112457777766442
Q ss_pred -ceEEeeCCCCe--EEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCc
Q 042303 202 -RSILFDPKANR--VIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQD 278 (519)
Q Consensus 202 -~~~~yDp~t~~--w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s 278 (519)
....+|+.+++ |.+... .+. .+ +... ..| ....+.|++.|+.-.+.+ ...
T Consensus 209 ~~~~a~~~~~G~~~w~~~~~-~~~-~~----~~~~-~~~--------~~~~~~v~v~~~~~~~~~------------~g~ 261 (370)
T COG1520 209 GILYALNAEDGTLKWSQKVS-QTI-GR----TAIS-TTP--------AVDGGPVYVDGGVYAGSY------------GGK 261 (370)
T ss_pred ceEEEEEccCCcEeeeeeee-ccc-Cc----cccc-ccc--------cccCceEEECCcEEEEec------------CCe
Confidence 24456776543 442111 110 01 1110 011 234778888777311111 112
Q ss_pred eEEEEecCCCCceEec-cCC--cceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcc-eeeecCC
Q 042303 279 CGRIRITEPNPVWKKE-MMP--TRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHH-RFQELAP 354 (519)
Q Consensus 279 ~~~~d~~~~~~~W~~~-~M~--~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~-~W~~~~~ 354 (519)
..++|..+....|+.. ++. ..+.......--||++|+..-..... ....+.++++..+... .|.....
T Consensus 262 ~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~w~~~~~ 333 (370)
T COG1520 262 LLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGR--------GSGSLYALADVPGGTLLKWSYPVG 333 (370)
T ss_pred EEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccc--------cccceEEEeccCCCeeEEEEEeCC
Confidence 4567766556779876 522 22333332333599999976433210 1224567776443222 6754433
Q ss_pred CCcCCccceeeeEcCCCcEEEecCC
Q 042303 355 TTIPRMYHSVSVLLPDGKVLIAGSN 379 (519)
Q Consensus 355 ~~~~R~yhs~a~LlpdG~V~v~GG~ 379 (519)
- .+.......-||.+|.++-+
T Consensus 334 g----~~~~~~~~~~~g~~y~~~~~ 354 (370)
T COG1520 334 G----GYSLSTVAGSDGTLYFGGDD 354 (370)
T ss_pred C----ceecccceeccCeEEecccC
Confidence 2 22222333447777776654
No 113
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=43.72 E-value=2.7e+02 Score=28.80 Aligned_cols=94 Identities=13% Similarity=0.233 Sum_probs=58.4
Q ss_pred CCccceeEEEEECCCCcEEECcc---CC-----CcccCCCeeccCCeEEEecCCCCCCceEEEEe--CCCCCc-----cc
Q 042303 43 EVDCWAHSVLFDIETAKLKPLKI---QT-----DTWCSSGGLTVDGHLVGTGGYQGGANTVRYLW--TCDTCD-----WI 107 (519)
Q Consensus 43 ~~~~~~~~~~yDp~t~~w~~l~~---~~-----~~~c~~~~~l~dG~llv~GG~~~g~~~v~~yd--p~~~~~-----W~ 107 (519)
+.+..-.+..||+..++++.+.. ++ +.+|+.--+.+||+.|-+- +.+.+++.+|. |. +.+ |+
T Consensus 210 EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas--NRg~dsI~~f~V~~~-~g~L~~~~~~ 286 (346)
T COG2706 210 ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS--NRGHDSIAVFSVDPD-GGKLELVGIT 286 (346)
T ss_pred ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe--cCCCCeEEEEEEcCC-CCEEEEEEEe
Confidence 34444555568888899987753 22 3467766778899877663 22445555554 44 332 22
Q ss_pred cCCCCCCCccccceEEEcCCCcEEEEcCCCCCceEEe
Q 042303 108 EYPTALAEPRWYSTQVTLPDGGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 108 ~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~~~~E~y 144 (519)
.. +-+.||.+ ..-++|+.+++-+.++.++.+|
T Consensus 287 ~t--eg~~PR~F---~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 287 PT--EGQFPRDF---NINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred cc--CCcCCccc---eeCCCCCEEEEEccCCCcEEEE
Confidence 11 24457754 2335889999999888777777
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=43.65 E-value=3.1e+02 Score=29.49 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=43.6
Q ss_pred eEEEEECCCCcEEECccCCCc---ccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEc
Q 042303 49 HSVLFDIETAKLKPLKIQTDT---WCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTL 125 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~---~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L 125 (519)
....||..+.+.+++..+... +-.--.+-+++..+++-|.. ..+.+.... +..|...-. |+ ++- ...+--
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---G~I~lLhak-T~eli~s~K-ie-G~v-~~~~fs 353 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---GHIHLLHAK-TKELITSFK-IE-GVV-SDFTFS 353 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---ceEEeehhh-hhhhhheee-ec-cEE-eeEEEe
Confidence 445799999999888755211 11112344566666666643 245566655 677764322 33 221 122333
Q ss_pred CCCcEEEEcCCC
Q 042303 126 PDGGFIVVGGRG 137 (519)
Q Consensus 126 ~dG~V~viGG~~ 137 (519)
+||+.+++.|..
T Consensus 354 Sdsk~l~~~~~~ 365 (514)
T KOG2055|consen 354 SDSKELLASGGT 365 (514)
T ss_pred cCCcEEEEEcCC
Confidence 677655554443
No 115
>PRK05137 tolB translocation protein TolB; Provisional
Probab=43.29 E-value=2.4e+02 Score=29.89 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=46.3
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCc
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGG 129 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~ 129 (519)
-..+|.++++.+.+.... .........+||+-+++.....+...++++|.. +.+...+.. ....+.....-+||+
T Consensus 272 Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~~~lt~---~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNPRRISF---GGGRYSTPVWSPRGD 346 (435)
T ss_pred EEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CCCeEEeec---CCCcccCeEECCCCC
Confidence 345688888887775432 112234567899877765444455678888876 444433321 122233334457887
Q ss_pred EEEEcC
Q 042303 130 FIVVGG 135 (519)
Q Consensus 130 V~viGG 135 (519)
.+++..
T Consensus 347 ~ia~~~ 352 (435)
T PRK05137 347 LIAFTK 352 (435)
T ss_pred EEEEEE
Confidence 776644
No 116
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=42.42 E-value=3.7e+02 Score=27.14 Aligned_cols=138 Identities=16% Similarity=0.200 Sum_probs=70.2
Q ss_pred eeEEEEECCCCcEEECc-cCCCcccCCC------eeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccc
Q 042303 48 AHSVLFDIETAKLKPLK-IQTDTWCSSG------GLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYS 120 (519)
Q Consensus 48 ~~~~~yDp~t~~w~~l~-~~~~~~c~~~------~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~ 120 (519)
+-+.-||-.-..|-.-. ..+..||... ++-+|.+-+|.|-.+ +++..+|....++.+. ...+. .-|-.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD---kTiklwnt~g~ck~t~-~~~~~-~~WVs 152 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD---KTIKLWNTLGVCKYTI-HEDSH-REWVS 152 (315)
T ss_pred EEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc---ceeeeeeecccEEEEE-ecCCC-cCcEE
Confidence 33444444444443322 2234455443 445688888887643 5677777652333332 22243 34555
Q ss_pred eEEEcCCC-cEEEEcCCCCCceEEeCCCCCCCCcccccccchhccccccCCcccccccccccCccceEEEeeCCcEEEEe
Q 042303 121 TQVTLPDG-GFIVVGGRGAFSYEYIPPQGQSNKQSIYLPLLRETHDQLAGHFGTENFYRIENNLYPFVNLVTDGNLFIFS 199 (519)
Q Consensus 121 s~~~L~dG-~V~viGG~~~~~~E~yP~~~~w~~~~~~~p~l~~t~~~~~g~~~~~~~~~~~~~~yp~~~~~~~G~Ifv~G 199 (519)
++.-.|+. ..+|+.+.+.+++.+|--.+.- ...+. .|+ ..+--.+.+.+||.+.+.|
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~-------~gh----------~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTF-------IGH----------SGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcc-------ccc----------cccEEEEEECCCCCEEecC
Confidence 55555552 4445555455677776222110 11110 011 1111135677999999999
Q ss_pred CCce--EEeeCCCCe
Q 042303 200 NNRS--ILFDPKANR 212 (519)
Q Consensus 200 g~~~--~~yDp~t~~ 212 (519)
|.+. .++|....+
T Consensus 211 gkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGK 225 (315)
T ss_pred CCCceEEEEEccCCc
Confidence 9864 466766554
No 117
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=41.60 E-value=3e+02 Score=25.75 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=16.8
Q ss_pred EeeCCcEEEEeC-CceEEeeCCCCe
Q 042303 189 LVTDGNLFIFSN-NRSILFDPKANR 212 (519)
Q Consensus 189 ~~~~G~Ifv~Gg-~~~~~yDp~t~~ 212 (519)
+..+++||+... .....+|..+++
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGK 97 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSC
T ss_pred eecccccccccceeeeEecccCCcc
Confidence 456788887753 357789977765
No 118
>PRK01742 tolB translocation protein TolB; Provisional
Probab=41.50 E-value=2.2e+02 Score=30.21 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=43.8
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccc-cceEEEcCCC
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRW-YSTQVTLPDG 128 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~-y~s~~~L~dG 128 (519)
-.++|..+++-+.+..... ........+||+.+++....++...++.+|.. +.....+.. ... ....+--+||
T Consensus 230 i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~lt~----~~~~~~~~~wSpDG 303 (429)
T PRK01742 230 LVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQLTS----GAGNNTEPSWSPDG 303 (429)
T ss_pred EEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEeecc----CCCCcCCEEECCCC
Confidence 3467888877665543322 12235677899877776544454567777876 555443322 111 1233445788
Q ss_pred cEEEEc
Q 042303 129 GFIVVG 134 (519)
Q Consensus 129 ~V~viG 134 (519)
+-++..
T Consensus 304 ~~i~f~ 309 (429)
T PRK01742 304 QSILFT 309 (429)
T ss_pred CEEEEE
Confidence 754443
No 119
>PTZ00420 coronin; Provisional
Probab=41.18 E-value=4.1e+02 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=16.9
Q ss_pred cCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCC
Q 042303 309 PTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKE 343 (519)
Q Consensus 309 pdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t 343 (519)
+|++.++.+|.+.. . -.++-+||...
T Consensus 224 ~d~~~IlTtG~d~~-------~--~R~VkLWDlr~ 249 (568)
T PTZ00420 224 GDDNYILSTGFSKN-------N--MREMKLWDLKN 249 (568)
T ss_pred CCCCEEEEEEcCCC-------C--ccEEEEEECCC
Confidence 68888888776421 0 11578999874
No 120
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=40.20 E-value=1.4e+02 Score=25.80 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=12.9
Q ss_pred cEEEEEEcCCCCCcCCCcceEEEEE
Q 042303 481 QHKIVAEAPPSGVITPPGYYLLYVV 505 (519)
Q Consensus 481 ~~~~~v~~P~~~~~~ppG~ymlf~~ 505 (519)
.-++.|+.|+|+ +=|.|-|-|-
T Consensus 94 ~~tv~V~spa~A---~VG~y~l~v~ 115 (118)
T PF00868_consen 94 SVTVSVTSPANA---PVGRYKLSVE 115 (118)
T ss_dssp EEEEEEE--TTS-----EEEEEEEE
T ss_pred EEEEEEECCCCC---ceEEEEEEEE
Confidence 356777777764 5599988764
No 121
>PRK05137 tolB translocation protein TolB; Provisional
Probab=39.59 E-value=2.8e+02 Score=29.44 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=45.1
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
...++|+.+++.+.+..... ........+||+.+++-...++...+..+|.. +.....+.. -.. ......--+||
T Consensus 227 ~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~Lt~-~~~--~~~~~~~spDG 301 (435)
T PRK05137 227 RVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTRLTD-SPA--IDTSPSYSPDG 301 (435)
T ss_pred EEEEEECCCCcEEEeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEEccC-CCC--ccCceeEcCCC
Confidence 45578999998887764432 22344567899765543333445678888877 555444432 110 11123344688
Q ss_pred cEEEEc
Q 042303 129 GFIVVG 134 (519)
Q Consensus 129 ~V~viG 134 (519)
+-++..
T Consensus 302 ~~i~f~ 307 (435)
T PRK05137 302 SQIVFE 307 (435)
T ss_pred CEEEEE
Confidence 755543
No 122
>PRK04922 tolB translocation protein TolB; Provisional
Probab=38.34 E-value=3.1e+02 Score=29.13 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=46.7
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
.-.++|+.+++.+++..... ........+||+-+++.....+...+..+|.. +.++..+.. ..+...+...-+||
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~lt~---~g~~~~~~~~SpDG 347 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERLTF---QGNYNARASVSPDG 347 (433)
T ss_pred eEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEeec---CCCCccCEEECCCC
Confidence 34567999988877654321 12234567899877765443444567778765 555544321 12333344555688
Q ss_pred cEEEEc
Q 042303 129 GFIVVG 134 (519)
Q Consensus 129 ~V~viG 134 (519)
+.+++.
T Consensus 348 ~~Ia~~ 353 (433)
T PRK04922 348 KKIAMV 353 (433)
T ss_pred CEEEEE
Confidence 776664
No 123
>PRK00178 tolB translocation protein TolB; Provisional
Probab=38.23 E-value=3e+02 Score=28.97 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=46.8
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCc
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGG 129 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~ 129 (519)
-.++|..+++.+.+.... .........+||+-+++.....+...+..+|.. +.++..+.. ..+.......-+||+
T Consensus 269 Iy~~d~~~~~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt~---~~~~~~~~~~Spdg~ 343 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVTF---VGNYNARPRLSADGK 343 (430)
T ss_pred EEEEECCCCCeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEeec---CCCCccceEECCCCC
Confidence 345799999988775432 112234567788766655444455678888876 566654431 122222334456887
Q ss_pred EEEEcCC
Q 042303 130 FIVVGGR 136 (519)
Q Consensus 130 V~viGG~ 136 (519)
.++.-..
T Consensus 344 ~i~~~~~ 350 (430)
T PRK00178 344 TLVMVHR 350 (430)
T ss_pred EEEEEEc
Confidence 7666543
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=37.42 E-value=4.6e+02 Score=26.71 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=46.4
Q ss_pred EEEEECCCCcEEECccCC-CcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 50 SVLFDIETAKLKPLKIQT-DTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~-~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
.-.||..+++-..+..-. ...|=... ..-..+|+||++ +++.++||+ .. -.... .++..+-| ++.+ .|
T Consensus 77 vr~~Dln~~~~~~igth~~~i~ci~~~--~~~~~vIsgsWD---~~ik~wD~R-~~-~~~~~-~d~~kkVy-~~~v--~g 145 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQIGTHDEGIRCIEYS--YEVGCVISGSWD---KTIKFWDPR-NK-VVVGT-FDQGKKVY-CMDV--SG 145 (323)
T ss_pred EEEEEecCCcceeeccCCCceEEEEee--ccCCeEEEcccC---ccEEEEecc-cc-ccccc-cccCceEE-EEec--cC
Confidence 446888777665554322 12332222 223467889986 679999998 32 22222 24445544 3443 56
Q ss_pred cEEEEcCCCCCceEEe
Q 042303 129 GFIVVGGRGAFSYEYI 144 (519)
Q Consensus 129 ~V~viGG~~~~~~E~y 144 (519)
..+|+|+.+. .+-+|
T Consensus 146 ~~LvVg~~~r-~v~iy 160 (323)
T KOG1036|consen 146 NRLVVGTSDR-KVLIY 160 (323)
T ss_pred CEEEEeecCc-eEEEE
Confidence 7888888763 45556
No 125
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=36.85 E-value=1.6e+02 Score=30.25 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=48.9
Q ss_pred eeEEEEECCCCcEEECcc---CC-----CcccCCCeeccCCeEEEecCCCCCCceEEEEeCCC-CCccccCCC---CCCC
Q 042303 48 AHSVLFDIETAKLKPLKI---QT-----DTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCD-TCDWIEYPT---ALAE 115 (519)
Q Consensus 48 ~~~~~yDp~t~~w~~l~~---~~-----~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~-~~~W~~~~~---~m~~ 115 (519)
-....|+..+++++.+.. .+ ...++...+.+||+.|.+.- .+.+++.+|+-.. +.+.+.+.. .-..
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn--r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~ 293 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN--RGSNSISVFDLDPATGTLTLVQTVPTGGKF 293 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE--CTTTEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe--ccCCEEEEEEEecCCCceEEEEEEeCCCCC
Confidence 444456666777765432 21 12455556677887544432 2356777887521 333332211 0223
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCceEEe
Q 042303 116 PRWYSTQVTLPDGGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 116 ~R~y~s~~~L~dG~V~viGG~~~~~~E~y 144 (519)
+|. .+.-+||+.++++...+..+.+|
T Consensus 294 Pr~---~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 294 PRH---FAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp EEE---EEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccE---EEEeCCCCEEEEEecCCCeEEEE
Confidence 443 34457999888888777777777
No 126
>PRK01029 tolB translocation protein TolB; Provisional
Probab=36.13 E-value=1.5e+02 Score=31.74 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=37.1
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccC
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEY 109 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~ 109 (519)
.-.+||+.+++.+.+... +.........+||+.+++-....+...+..+|.. +.+...+
T Consensus 352 ~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~-~g~~~~L 410 (428)
T PRK01029 352 QICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLI-TKKTRKI 410 (428)
T ss_pred EEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEe
Confidence 456789999999887643 2233445667899877654433344567777776 4544443
No 127
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=35.97 E-value=4.8e+02 Score=28.72 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=15.7
Q ss_pred eeCCcEEEEeC-CceEEeeCCCCe
Q 042303 190 VTDGNLFIFSN-NRSILFDPKANR 212 (519)
Q Consensus 190 ~~~G~Ifv~Gg-~~~~~yDp~t~~ 212 (519)
+.+|+||+... .....+|.++++
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk 90 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGK 90 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCc
Confidence 45788888654 346778888754
No 128
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=35.43 E-value=76 Score=30.67 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=31.4
Q ss_pred CcEEEEEEcCCCCCcCCCcceEEEEEcCCcCCccEEEEeC
Q 042303 480 GQHKIVAEAPPSGVITPPGYYLLYVVYKGVPSPGMWFQIK 519 (519)
Q Consensus 480 g~~~~~v~~P~~~~~~ppG~ymlf~~~~gvPS~a~~v~i~ 519 (519)
|-++++|++|.+- ++|.+=|.+..+|+.|.+..|.||
T Consensus 179 Gl~QvNv~vP~~~---~~G~~~v~itvgg~~S~~~~i~v~ 215 (215)
T TIGR03437 179 GLYQVNVRVPAGL---ATGAVPVVITVGGVTSNAVTIAVQ 215 (215)
T ss_pred ceEEEEEEcCCCC---CCCcEeEEEEECCccCCcEEEEeC
Confidence 5789999999873 679888888889999999888875
No 129
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.17 E-value=2.1e+02 Score=29.06 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=51.7
Q ss_pred ceeEEEEECCCCcEE-ECccCC-CcccCCCeeccCCeEEEe-cCCCCC-CceEEEEeCCCCCccccCCCCCC-Cccccce
Q 042303 47 WAHSVLFDIETAKLK-PLKIQT-DTWCSSGGLTVDGHLVGT-GGYQGG-ANTVRYLWTCDTCDWIEYPTALA-EPRWYST 121 (519)
Q Consensus 47 ~~~~~~yDp~t~~w~-~l~~~~-~~~c~~~~~l~dG~llv~-GG~~~g-~~~v~~ydp~~~~~W~~~~~~m~-~~R~y~s 121 (519)
...+.+|||....-- .+.... ..|...+++-+||++|-. -+..+. .--+-+||-. ..+..... .. .+-.-|-
T Consensus 90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE-~~t~GiGpHe 166 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGE-FSTHGIGPHE 166 (366)
T ss_pred CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecc-cccCCcCcce
Confidence 355678888876542 233333 458888999999987654 332232 3356678864 34444332 22 2334567
Q ss_pred EEEcCCCcEEEEc
Q 042303 122 QVTLPDGGFIVVG 134 (519)
Q Consensus 122 ~~~L~dG~V~viG 134 (519)
++.++||+.+|+-
T Consensus 167 v~lm~DGrtlvva 179 (366)
T COG3490 167 VTLMADGRTLVVA 179 (366)
T ss_pred eEEecCCcEEEEe
Confidence 8889999988873
No 130
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=35.14 E-value=5e+02 Score=26.39 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=47.2
Q ss_pred cCCcceeecee-EEecCCc--EEEEcCcCCCC------CCccCCCCCccccEEEeCCCCCcceee--ecCCCCcCCccce
Q 042303 295 MMPTRRVMGDM-TILPTGD--VLLVNGAQNGT------SAWNDAEEPALAPALYKTKEKRHHRFQ--ELAPTTIPRMYHS 363 (519)
Q Consensus 295 ~M~~~R~~~~~-vvLpdG~--V~viGG~~~g~------~g~~~~~~~~~~~e~YdP~t~~g~~W~--~~~~~~~~R~yhs 363 (519)
..|.+|..|++ |+--.|| +.++||..+=. ..|+.--+-.-++.+.|.+-+ -.+ .++.+......|-
T Consensus 83 dvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG---C~tah~lpEl~dG~SFHv 159 (337)
T PF03089_consen 83 DVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG---CCTAHTLPELQDGQSFHV 159 (337)
T ss_pred CCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc---ccccccchhhcCCeEEEE
Confidence 78999999876 3334554 56778865311 113211111113455566554 333 3556666777774
Q ss_pred eeeEcCCCcEEEecCCCC
Q 042303 364 VSVLLPDGKVLIAGSNTH 381 (519)
Q Consensus 364 ~a~LlpdG~V~v~GG~~~ 381 (519)
+ |--+..||+.||..-
T Consensus 160 s--lar~D~VYilGGHsl 175 (337)
T PF03089_consen 160 S--LARNDCVYILGGHSL 175 (337)
T ss_pred E--EecCceEEEEccEEc
Confidence 3 345999999999743
No 131
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=32.83 E-value=2e+02 Score=29.06 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=37.7
Q ss_pred ccceeEEEEECCCCcEEECccCCCcccC-CCeeccCCeEEEecCCC--CC--CceEEEEeCCCCCccccCCC
Q 042303 45 DCWAHSVLFDIETAKLKPLKIQTDTWCS-SGGLTVDGHLVGTGGYQ--GG--ANTVRYLWTCDTCDWIEYPT 111 (519)
Q Consensus 45 ~~~~~~~~yDp~t~~w~~l~~~~~~~c~-~~~~l~dG~llv~GG~~--~g--~~~v~~ydp~~~~~W~~~~~ 111 (519)
+|.. .+.||+.+.+|..+..- .... ......++.-|++||.. .+ ...+-.||.. +.+|+.+..
T Consensus 14 ~C~~-lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~-~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPG-LCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK-NQTWSSLGG 81 (281)
T ss_pred CCCE-EEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecC-CCeeeecCC
Confidence 4544 36799999999987543 1111 11222344444455542 22 3567789998 899987654
No 132
>PRK04922 tolB translocation protein TolB; Provisional
Probab=32.74 E-value=3.9e+02 Score=28.32 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=46.9
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCc
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGG 129 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~ 129 (519)
...+|..+++.+.+... ...+......+||+.+++....++...+.++|.. +.+...+.. ..+-.....-+||+
T Consensus 318 iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~-~g~~~~Lt~----~~~~~~p~~spdG~ 391 (433)
T PRK04922 318 IYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS-TGSVRTLTP----GSLDESPSFAPNGS 391 (433)
T ss_pred EEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECC-CCCeEECCC----CCCCCCceECCCCC
Confidence 44567778887776532 2334445677899877764333344578899987 666554432 11212234456888
Q ss_pred EEEEcCC
Q 042303 130 FIVVGGR 136 (519)
Q Consensus 130 V~viGG~ 136 (519)
.++....
T Consensus 392 ~i~~~s~ 398 (433)
T PRK04922 392 MVLYATR 398 (433)
T ss_pred EEEEEEe
Confidence 7666543
No 133
>PRK04792 tolB translocation protein TolB; Provisional
Probab=32.63 E-value=4.7e+02 Score=27.99 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=43.5
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCcccc-ceEEEcCCC
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWY-STQVTLPDG 128 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y-~s~~~L~dG 128 (519)
-.++|+.+++-+.+...... -......+||+-+++-...++...+..+|.. +.+...+.. .+.. ...+--+||
T Consensus 244 L~~~dl~tg~~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~lt~----~~~~~~~p~wSpDG 317 (448)
T PRK04792 244 IFVQDIYTQVREKVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTRITR----HRAIDTEPSWHPDG 317 (448)
T ss_pred EEEEECCCCCeEEecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEECcc----CCCCccceEECCCC
Confidence 34578888877766543221 1234567899855543333345678888987 666655432 1111 122334688
Q ss_pred cEEEEc
Q 042303 129 GFIVVG 134 (519)
Q Consensus 129 ~V~viG 134 (519)
+-+++.
T Consensus 318 ~~I~f~ 323 (448)
T PRK04792 318 KSLIFT 323 (448)
T ss_pred CEEEEE
Confidence 755443
No 134
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.38 E-value=8.1e+02 Score=28.00 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=35.5
Q ss_pred eeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCc-cceeeeEcCCCcEEEecCCCCC
Q 042303 304 DMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRM-YHSVSVLLPDGKVLIAGSNTHD 382 (519)
Q Consensus 304 ~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~-yhs~a~LlpdG~V~v~GG~~~~ 382 (519)
+...-|+|+-++.|+.. | .+-+||-.+. + .+..+..-.. -.|.. .=.||.|||+||..+.
T Consensus 582 al~~Sp~Gr~LaSg~ed-~------------~I~iWDl~~~---~--~v~~l~~Ht~ti~Sls-FS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDED-G------------LIKIWDLANG---S--LVKQLKGHTGTIYSLS-FSRDGNVLASGGADNS 642 (707)
T ss_pred EEEEcCCCceEeecccC-C------------cEEEEEcCCC---c--chhhhhcccCceeEEE-EecCCCEEEecCCCCe
Confidence 44567899988888764 1 4679998775 2 2222211111 11222 2359999999998763
No 135
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=32.25 E-value=2.3e+02 Score=31.30 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCceEec-cCCccee-------eceeEEecCCcEEEEcCcC
Q 042303 249 HSDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRRV-------MGDMTILPTGDVLLVNGAQ 320 (519)
Q Consensus 249 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~-------~~~~vvLpdG~V~viGG~~ 320 (519)
+++||++... ..+.++|.......|+.. ..+.... ....+++-+++||+....
T Consensus 69 ~g~vyv~s~~------------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d- 129 (527)
T TIGR03075 69 DGVMYVTTSY------------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD- 129 (527)
T ss_pred CCEEEEECCC------------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-
Confidence 7888886432 135567776545678865 3221100 011234558888874321
Q ss_pred CCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCcc-ceeeeEcCCCcEEEec
Q 042303 321 NGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMY-HSVSVLLPDGKVLIAG 377 (519)
Q Consensus 321 ~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~y-hs~a~LlpdG~V~v~G 377 (519)
+ .+.++|.++.+ ..|+.-.. .....+ ...+-++-+|+|++..
T Consensus 130 -g------------~l~ALDa~TGk-~~W~~~~~-~~~~~~~~tssP~v~~g~Vivg~ 172 (527)
T TIGR03075 130 -A------------RLVALDAKTGK-VVWSKKNG-DYKAGYTITAAPLVVKGKVITGI 172 (527)
T ss_pred -C------------EEEEEECCCCC-EEeecccc-cccccccccCCcEEECCEEEEee
Confidence 1 35788887762 24653221 111111 1222334489998864
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=31.98 E-value=3.8e+02 Score=29.31 Aligned_cols=139 Identities=18% Similarity=0.170 Sum_probs=73.1
Q ss_pred CcEEEEeCCceEEeeCCCCeEEEEccCCCCC-CCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccccccccc
Q 042303 193 GNLFIFSNNRSILFDPKANRVIREYPVLTGG-SRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQ 271 (519)
Q Consensus 193 G~Ifv~Gg~~~~~yDp~t~~w~~~~p~~p~~-~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 271 (519)
-+||.-|-.-+-+||...-.-...+..++-- +-+| --++-|+| +|+-|++||..
T Consensus 432 rhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdny--iRSckL~p-----------dgrtLivGGea------------ 486 (705)
T KOG0639|consen 432 RHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNY--IRSCKLLP-----------DGRTLIVGGEA------------ 486 (705)
T ss_pred ceeEecCCCeEEEeeccCCCCCCccccccccCcccc--eeeeEecC-----------CCceEEecccc------------
Confidence 3455433333556776542100122223221 2344 34566765 89999999963
Q ss_pred cccCCCceEEEEecCCCCceEec-cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceee
Q 042303 272 FWPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQ 350 (519)
Q Consensus 272 ~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~ 350 (519)
+++.++|+..+++.-..+ +-..+-+++- .+-||-||...-= ..| .+.+||-... +
T Consensus 487 -----stlsiWDLAapTprikaeltssapaCyAL-a~spDakvcFscc-sdG------------nI~vwDLhnq---~-- 542 (705)
T KOG0639|consen 487 -----STLSIWDLAAPTPRIKAELTSSAPACYAL-AISPDAKVCFSCC-SDG------------NIAVWDLHNQ---T-- 542 (705)
T ss_pred -----ceeeeeeccCCCcchhhhcCCcchhhhhh-hcCCccceeeeec-cCC------------cEEEEEcccc---e--
Confidence 345678888666665554 4333445544 3567888865431 111 3578887655 2
Q ss_pred ecCCCCcCCccceeeeEcCCCcEEEecCCC
Q 042303 351 ELAPTTIPRMYHSVSVLLPDGKVLIAGSNT 380 (519)
Q Consensus 351 ~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~ 380 (519)
.+...+----..|+-.+-+||.=+=.||-.
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCc
Confidence 222222111223455556688777777753
No 137
>PLN00181 protein SPA1-RELATED; Provisional
Probab=31.18 E-value=8.8e+02 Score=28.04 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=14.9
Q ss_pred EEcCCCcEEEEcCCCCCceEEe
Q 042303 123 VTLPDGGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 123 ~~L~dG~V~viGG~~~~~~E~y 144 (519)
+--+||++++.||.++ .+.+|
T Consensus 490 ~fs~dg~~latgg~D~-~I~iw 510 (793)
T PLN00181 490 GFDRDGEFFATAGVNK-KIKIF 510 (793)
T ss_pred EECCCCCEEEEEeCCC-EEEEE
Confidence 3346899999999764 55666
No 138
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=30.72 E-value=4e+02 Score=24.79 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=41.8
Q ss_pred CCccccCceEEEEEEeccccccceEEEEEEeCCcccccCCCCCceEEeeeeeeeecCCCCcEEEEEEcCCCCCcCCCcce
Q 042303 421 DCMVGYGQRISIQVKTTEGIKQSDIRITMYAPAFTTHGTSMNQRLVILGLVEVRNDVAPGQHKIVAEAPPSGVITPPGYY 500 (519)
Q Consensus 421 p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~~~~~ppG~y 500 (519)
|..+..|+.|++++-..+ ....-..|.+...+........ ...++. ..+| .+++++| -||.|
T Consensus 144 P~~l~~g~~~~~~vl~~G-kPl~~a~V~~~~~~~~~~~~~~-----~~~~~T----D~~G--~~~~~~~------~~G~w 205 (215)
T PF10670_consen 144 PYKLKAGDPLPFQVLFDG-KPLAGAEVEAFSPGGWYDVEHE-----AKTLKT----DANG--RATFTLP------RPGLW 205 (215)
T ss_pred cccccCCCEEEEEEEECC-eEcccEEEEEEECCCccccccc-----eEEEEE----CCCC--EEEEecC------CCEEE
Confidence 677888998888876432 2223477888877766533332 223322 2344 6767654 57999
Q ss_pred EEEEEc
Q 042303 501 LLYVVY 506 (519)
Q Consensus 501 mlf~~~ 506 (519)
||-+..
T Consensus 206 li~a~~ 211 (215)
T PF10670_consen 206 LIRASH 211 (215)
T ss_pred EEEEEE
Confidence 998874
No 139
>PRK02889 tolB translocation protein TolB; Provisional
Probab=30.53 E-value=5.1e+02 Score=27.43 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=43.0
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
+-..+|..+++.+.+.... .........+||+.+++.....+...++.+|.. +.+...+. . ......+...-+||
T Consensus 265 ~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-~g~~~~lt--~-~g~~~~~~~~SpDG 339 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-GGAAQRVT--F-TGSYNTSPRISPDG 339 (427)
T ss_pred eEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-CCceEEEe--c-CCCCcCceEECCCC
Confidence 3445577777766664321 122334578899876664433344566777755 44443322 1 12222233445688
Q ss_pred cEEEEcC
Q 042303 129 GFIVVGG 135 (519)
Q Consensus 129 ~V~viGG 135 (519)
+.++...
T Consensus 340 ~~Ia~~s 346 (427)
T PRK02889 340 KLLAYIS 346 (427)
T ss_pred CEEEEEE
Confidence 7766544
No 140
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=30.36 E-value=6.2e+02 Score=26.04 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=71.5
Q ss_pred EeeCCcEEEEeC-CceEEeeCCCCe--EEEEccCCCCCCCccCCCCcEEecccccccCCccccCCeEEEEcCCCCCcccc
Q 042303 189 LVTDGNLFIFSN-NRSILFDPKANR--VIREYPVLTGGSRNYPASGMSVLLPIKLHAGHQKIIHSDILVCGGAAWDAFYY 265 (519)
Q Consensus 189 ~~~~G~Ifv~Gg-~~~~~yDp~t~~--w~~~~p~~p~~~r~~~~~g~av~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~ 265 (519)
+.-||+||+... .....+|+.+.+ |...+.. .... .++.. + ..+|+||+-. .+
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~----~~~~-~~~~~-~-----------~~~G~i~~g~-~~------ 120 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG----AVAQ-LSGPI-L-----------GSDGKIYVGS-WD------ 120 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcC----ccee-ccCce-E-----------EeCCeEEEec-cc------
Confidence 456888888622 245678999877 6432211 0011 01111 1 1278877632 22
Q ss_pred cccccccccCCCceEEEEecCCCCceEec-cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCC
Q 042303 266 AEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEK 344 (519)
Q Consensus 266 ~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~ 344 (519)
....++|..+....|+.. ... .+.... .+..|+.||+.... + .+.+.|+++.
T Consensus 121 -----------g~~y~ld~~~G~~~W~~~~~~~-~~~~~~-~v~~~~~v~~~s~~--g------------~~~al~~~tG 173 (370)
T COG1520 121 -----------GKLYALDASTGTLVWSRNVGGS-PYYASP-PVVGDGTVYVGTDD--G------------HLYALNADTG 173 (370)
T ss_pred -----------ceEEEEECCCCcEEEEEecCCC-eEEecC-cEEcCcEEEEecCC--C------------eEEEEEccCC
Confidence 134567765446679887 543 455444 45669999986511 1 2356666654
Q ss_pred CcceeeecCCC-CcCCccceeeeEcCCCcEEEecC
Q 042303 345 RHHRFQELAPT-TIPRMYHSVSVLLPDGKVLIAGS 378 (519)
Q Consensus 345 ~g~~W~~~~~~-~~~R~yhs~a~LlpdG~V~v~GG 378 (519)
..+|+.-.+. ...+.+-+.+ .-+|.||+..-
T Consensus 174 -~~~W~~~~~~~~~~~~~~~~~--~~~~~vy~~~~ 205 (370)
T COG1520 174 -TLKWTYETPAPLSLSIYGSPA--IASGTVYVGSD 205 (370)
T ss_pred -cEEEEEecCCccccccccCce--eecceEEEecC
Confidence 1257633322 2333333333 34888888754
No 141
>PRK00178 tolB translocation protein TolB; Provisional
Probab=29.30 E-value=6e+02 Score=26.65 Aligned_cols=60 Identities=7% Similarity=0.028 Sum_probs=36.5
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCC
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYP 110 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~ 110 (519)
.-.++|+.+++-+.+...... -......+||+-+++.-..++...++++|.. +.....+.
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g~-~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~lt 283 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEGL-NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSRVT 283 (430)
T ss_pred EEEEEECCCCCEEEccCCCCC-cCCeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEEcc
Confidence 344678988888776543221 1234567798766553333344678888987 66665544
No 142
>PRK02889 tolB translocation protein TolB; Provisional
Probab=28.43 E-value=6e+02 Score=26.87 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=42.1
Q ss_pred EEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccc-cceEEEcCCC
Q 042303 50 SVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRW-YSTQVTLPDG 128 (519)
Q Consensus 50 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~-y~s~~~L~dG 128 (519)
-.++|..+++-+.+..... .-......+||+.+++....++...++.+|.. +.....+.. ... .....--+||
T Consensus 222 I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~lt~----~~~~~~~~~wSpDG 295 (427)
T PRK02889 222 VYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD-GSGLRRLTQ----SSGIDTEPFFSPDG 295 (427)
T ss_pred EEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECC-CCCcEECCC----CCCCCcCeEEcCCC
Confidence 4567888887666643321 11245677899766654333455677777765 444433321 111 1123345688
Q ss_pred cEEEE
Q 042303 129 GFIVV 133 (519)
Q Consensus 129 ~V~vi 133 (519)
+-++.
T Consensus 296 ~~l~f 300 (427)
T PRK02889 296 RSIYF 300 (427)
T ss_pred CEEEE
Confidence 75554
No 143
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=27.61 E-value=5.3e+02 Score=26.71 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=34.3
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccC
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEY 109 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~ 109 (519)
...+||..+++.+.+...... .......+||+-+++....++...+.++|.. +.....+
T Consensus 215 ~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~l 273 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTRL 273 (417)
T ss_pred EEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEEC
Confidence 345689998877766543221 2234567898655443323344578888876 5554444
No 144
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=27.21 E-value=7.7e+02 Score=29.84 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=38.5
Q ss_pred eeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCC----------CCCCccccc-eEEEcCCCcEEEEcCCCCCceEE
Q 042303 75 GLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPT----------ALAEPRWYS-TQVTLPDGGFIVVGGRGAFSYEY 143 (519)
Q Consensus 75 ~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~----------~m~~~R~y~-s~~~L~dG~V~viGG~~~~~~E~ 143 (519)
++..||.|||+-.. ...+++||+. +.....+.. .....-..+ .+++-+||++||.-..+ ..+.+
T Consensus 810 avd~dG~LYVADs~---N~rIrviD~~-tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-n~Irv 884 (1057)
T PLN02919 810 LCAKDGQIYVADSY---NHKIKKLDPA-TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-SLIRY 884 (1057)
T ss_pred eEeCCCcEEEEECC---CCEEEEEECC-CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-CEEEE
Confidence 44568899988543 3679999987 554433221 000001123 34555689999986544 35566
Q ss_pred e-CCC
Q 042303 144 I-PPQ 147 (519)
Q Consensus 144 y-P~~ 147 (519)
+ ..+
T Consensus 885 id~~~ 889 (1057)
T PLN02919 885 LDLNK 889 (1057)
T ss_pred EECCC
Confidence 6 443
No 145
>PRK02888 nitrous-oxide reductase; Validated
Probab=27.20 E-value=9.5e+02 Score=27.19 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=35.3
Q ss_pred ceEEEEeCCCC---CccccCCCCCCCccccceEEEcCCCcEEEEcCCCCCceEEe
Q 042303 93 NTVRYLWTCDT---CDWIEYPTALAEPRWYSTQVTLPDGGFIVVGGRGAFSYEYI 144 (519)
Q Consensus 93 ~~v~~ydp~~~---~~W~~~~~~m~~~R~y~s~~~L~dG~V~viGG~~~~~~E~y 144 (519)
+.|-++|.. + ..+.-+. .++.++.-|.+.+-+||+-+++.|.-++++-++
T Consensus 296 n~V~VID~~-t~~~~~~~v~~-yIPVGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 296 SKVPVVDGR-KAANAGSALTR-YVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred CEEEEEECC-ccccCCcceEE-EEECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 568889976 4 1243333 377888888888889999777777666666666
No 146
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=26.73 E-value=2.1e+02 Score=22.29 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=30.1
Q ss_pred ccCceEEEEEEec--cccccceEEEEEEeCCcccccCCCCCceEEeeeeeeeecCCCCcEEEEEEcCCCCCcCCCcceEE
Q 042303 425 GYGQRISIQVKTT--EGIKQSDIRITMYAPAFTTHGTSMNQRLVILGLVEVRNDVAPGQHKIVAEAPPSGVITPPGYYLL 502 (519)
Q Consensus 425 ~~g~~~~v~~~~~--~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~~~~~ppG~yml 502 (519)
..|+++++++... .......++++|-.|.-.+ .....++.-.|+--. .-..+++|++|.+ ++||-|.|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~~~~~~~~l~pG~------s~~~~~~V~vp~~---a~~G~y~v 71 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSASPASVPSLPPGE------SVTVTFTVTVPAD---AAPGTYTV 71 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE----EEEEE--B-TTS------EEEEEEEEEE-TT-----SEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccCCccccccCCCCC------EEEEEEEEECCCC---CCCceEEE
Confidence 4577666665532 1112234667776676555 222223333232211 1134677777766 46899988
Q ss_pred EEE
Q 042303 503 YVV 505 (519)
Q Consensus 503 f~~ 505 (519)
=+.
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 147
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=25.86 E-value=3.2e+02 Score=27.74 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=35.0
Q ss_pred CccceeEEEEECCCCcEEE--CccCCCcccCCCeeccCCeEEEecCCC
Q 042303 44 VDCWAHSVLFDIETAKLKP--LKIQTDTWCSSGGLTVDGHLVGTGGYQ 89 (519)
Q Consensus 44 ~~~~~~~~~yDp~t~~w~~--l~~~~~~~c~~~~~l~dG~llv~GG~~ 89 (519)
.||.-+..+.|++-+-.+. ++.+.|-+....++.-+..||++||+.
T Consensus 127 vDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 127 VDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred ccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 3899999999999987764 555666665544555588999999974
No 148
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=24.92 E-value=8.2e+02 Score=25.67 Aligned_cols=91 Identities=22% Similarity=0.262 Sum_probs=51.1
Q ss_pred ceEEeeCCCCeEEEEccCCCCCCCccCCCCcEE-ecccccccCCccccCCeEEEEcCCCCCcccccccccccccCCCceE
Q 042303 202 RSILFDPKANRVIREYPVLTGGSRNYPASGMSV-LLPIKLHAGHQKIIHSDILVCGGAAWDAFYYAEDKKQFWPALQDCG 280 (519)
Q Consensus 202 ~~~~yDp~t~~w~~~~p~~p~~~r~~~~~g~av-~l~l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~ 280 (519)
.+-|||...|+.+ |.|..+-++| .|.+.| .-.+++.||.+ +.+-
T Consensus 216 ~VKCwDLe~nkvI----------R~YhGHlS~V~~L~lhP--------Tldvl~t~grD-----------------st~R 260 (460)
T KOG0285|consen 216 QVKCWDLEYNKVI----------RHYHGHLSGVYCLDLHP--------TLDVLVTGGRD-----------------STIR 260 (460)
T ss_pred eeEEEechhhhhH----------HHhccccceeEEEeccc--------cceeEEecCCc-----------------ceEE
Confidence 3679999999854 4443333333 233322 45688888875 2455
Q ss_pred EEEecCCCCceEec--cCCcceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCC
Q 042303 281 RIRITEPNPVWKKE--MMPTRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEK 344 (519)
Q Consensus 281 ~~d~~~~~~~W~~~--~M~~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~ 344 (519)
..|+....+.-... ..+..+++... .|+.|+- |-.+ + ++-+||-..+
T Consensus 261 vWDiRtr~~V~~l~GH~~~V~~V~~~~---~dpqvit-~S~D-~------------tvrlWDl~ag 309 (460)
T KOG0285|consen 261 VWDIRTRASVHVLSGHTNPVASVMCQP---TDPQVIT-GSHD-S------------TVRLWDLRAG 309 (460)
T ss_pred EeeecccceEEEecCCCCcceeEEeec---CCCceEE-ecCC-c------------eEEEeeeccC
Confidence 67776322222222 45666766653 3888753 2221 1 5678887776
No 149
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=24.75 E-value=1.8e+02 Score=29.62 Aligned_cols=92 Identities=23% Similarity=0.240 Sum_probs=60.2
Q ss_pred ceeeeEcCCCcEEEecCCCCCCCccCCCCCceeeEEEEcCCCCCCccCCCCCceecCCCCCccccCceEEEEEEeccccc
Q 042303 362 HSVSVLLPDGKVLIAGSNTHDGYKFDHKYPTELRVEKFSPPYLDPALAHLRPEIVLDKSDCMVGYGQRISIQVKTTEGIK 441 (519)
Q Consensus 362 hs~a~LlpdG~V~v~GG~~~~~~~~~~~~p~~~~vEiy~Ppyl~~~~~~~RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~ 441 (519)
|.+.+|--+|.||..|=+..+.+-.- +...|||+||-..- .-|.|+ .+..|..|+|-++..
T Consensus 120 nHTl~ltdtG~v~afGeNK~GQlGlg-----n~~~~v~s~~~~~~----~~~~v~------~v~cga~ftv~l~~~---- 180 (443)
T KOG1427|consen 120 NHTLVLTDTGQVLAFGENKYGQLGLG-----NAKNEVESTPLPCV----VSDEVT------NVACGADFTVWLSST---- 180 (443)
T ss_pred CcEEEEecCCcEEEeccccccccccc-----ccccccccCCCccc----cCccce------eeccccceEEEeecc----
Confidence 34566678999999998765544221 22458899887642 234443 367799999988843
Q ss_pred cceEEEEEEeCCcccccC----CCCCceEEeeeee
Q 042303 442 QSDIRITMYAPAFTTHGT----SMNQRLVILGLVE 472 (519)
Q Consensus 442 ~~~~~v~l~~~~~~THs~----n~~QR~v~L~~~~ 472 (519)
.+|..+-|-..|---|.. ||+.-.|.|.|..
T Consensus 181 ~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 181 ESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred cceeecCCccccccccCcchhhccccccceeeeec
Confidence 356677777767666654 5666666666643
No 150
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=24.52 E-value=9.2e+02 Score=26.08 Aligned_cols=146 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred EeeCCcEEEEeCCc-eEEeeCCCCe--EEEEccCC-CCCCCccCCCCcEEecccccccCCccccC-CeEEEEcCCCCCcc
Q 042303 189 LVTDGNLFIFSNNR-SILFDPKANR--VIREYPVL-TGGSRNYPASGMSVLLPIKLHAGHQKIIH-SDILVCGGAAWDAF 263 (519)
Q Consensus 189 ~~~~G~Ifv~Gg~~-~~~yDp~t~~--w~~~~p~~-p~~~r~~~~~g~av~l~l~~~~~~~~~~~-gkI~v~GG~~~~~~ 263 (519)
++.+|+||+..... ...+|..+++ |......- ..........+.++. + ++||+.....
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-------------~~~~V~v~~~~g---- 120 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-------------DPRKVFFGTFDG---- 120 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-------------cCCeEEEecCCC----
Q ss_pred cccccccccccCCCceEEEEecCCCCceEec-cCC--cceeeceeEEecCCcEEEEc--------CcCCCCCCccCCCCC
Q 042303 264 YYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMP--TRRVMGDMTILPTGDVLLVN--------GAQNGTSAWNDAEEP 332 (519)
Q Consensus 264 ~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~--~~R~~~~~vvLpdG~V~viG--------G~~~g~~g~~~~~~~ 332 (519)
.+..+|.......|+.. .-. ..-...++.++-++.||+.. |...
T Consensus 121 --------------~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g----------- 175 (488)
T cd00216 121 --------------RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG----------- 175 (488)
T ss_pred --------------eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCc-----------
Q ss_pred ccccEEEeCCCCCcceeeecCCCCc------------------CCccceeeeEcCCCcEEEecCC
Q 042303 333 ALAPALYKTKEKRHHRFQELAPTTI------------------PRMYHSVSVLLPDGKVLIAGSN 379 (519)
Q Consensus 333 ~~~~e~YdP~t~~g~~W~~~~~~~~------------------~R~yhs~a~LlpdG~V~v~GG~ 379 (519)
.+.++|.++. -..|+.-...+. +....+.++-..+|+||+..++
T Consensus 176 --~v~alD~~TG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~ 237 (488)
T cd00216 176 --ALRAYDVETG-KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGN 237 (488)
T ss_pred --EEEEEECCCC-ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCC
No 151
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.12 E-value=4.1e+02 Score=27.05 Aligned_cols=89 Identities=21% Similarity=0.408 Sum_probs=48.7
Q ss_pred cceeeceeEEecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeeeEcCCCcEEEec
Q 042303 298 TRRVMGDMTILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAG 377 (519)
Q Consensus 298 ~~R~~~~~vvLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~G 377 (519)
....+.-.+--+||+++-.--.+. +.+.. -+-+||-. . .++.++.-+.--....-.+|++|||.+|+-
T Consensus 112 ~RHfyGHGvfs~dG~~LYATEndf------d~~rG--ViGvYd~r-~---~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 112 GRHFYGHGVFSPDGRLLYATENDF------DPNRG--VIGVYDAR-E---GFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred CceeecccccCCCCcEEEeecCCC------CCCCc--eEEEEecc-c---ccceecccccCCcCcceeEEecCCcEEEEe
Confidence 334444457789998875422111 11112 35789976 4 677666544333322345788999997654
Q ss_pred CC---CCCCCccCCCCCceeeEEEEcCCC
Q 042303 378 SN---THDGYKFDHKYPTELRVEKFSPPY 403 (519)
Q Consensus 378 G~---~~~~~~~~~~~p~~~~vEiy~Ppy 403 (519)
++ .+..+- -+++++|--.|.+
T Consensus 180 nGGIethpdfg-----R~~lNldsMePSl 203 (366)
T COG3490 180 NGGIETHPDFG-----RTELNLDSMEPSL 203 (366)
T ss_pred CCceecccccC-----ccccchhhcCccE
Confidence 33 221110 1366777777776
No 152
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=24.04 E-value=2.5e+02 Score=26.34 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=41.3
Q ss_pred eEEEEECCCCcEEECccCCCcccCCCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCC
Q 042303 49 HSVLFDIETAKLKPLKIQTDTWCSSGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDG 128 (519)
Q Consensus 49 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG 128 (519)
...+||.+...-..+.. ........-++|+.+++||..+..-.+++||.. ++..+.. ...... ..+.=-+||
T Consensus 84 ~v~lyd~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~---~~~~i~~-~~~~~~-t~~~WsPdG 155 (194)
T PF08662_consen 84 KVTLYDVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR---KKKKIST-FEHSDA-TDVEWSPDG 155 (194)
T ss_pred ccEEEcCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECC---CCEEeec-cccCcE-EEEEEcCCC
Confidence 44566665333333221 112223456899999999976434578999965 3333332 222211 112223578
Q ss_pred cEEEEcC
Q 042303 129 GFIVVGG 135 (519)
Q Consensus 129 ~V~viGG 135 (519)
+.++...
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 8887643
No 153
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=23.42 E-value=3.8e+02 Score=21.25 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=36.6
Q ss_pred CCccccCceEEEEEEec--cccccceEEEEEEeCCcccccCCCCCceE-EeeeeeeeecCCCCcEEEEEEcCCCCCcCCC
Q 042303 421 DCMVGYGQRISIQVKTT--EGIKQSDIRITMYAPAFTTHGTSMNQRLV-ILGLVEVRNDVAPGQHKIVAEAPPSGVITPP 497 (519)
Q Consensus 421 p~~~~~g~~~~v~~~~~--~~~~~~~~~v~l~~~~~~THs~n~~QR~v-~L~~~~~~~~~~~g~~~~~v~~P~~~~~~pp 497 (519)
|..+..|+.++|++... +.....-..|.+...+... +++.| .|.- +...+++++..+. .|
T Consensus 12 ~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-----~~~~i~~L~~--------g~~~~v~~~~~~~----~~ 74 (101)
T PF07705_consen 12 PSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV-----STVTIPSLAP--------GESETVTFTWTPP----SP 74 (101)
T ss_dssp -SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE-----EEEEESEB-T--------TEEEEEEEEEE-S----S-
T ss_pred CCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee-----ccEEECCcCC--------CcEEEEEEEEEeC----CC
Confidence 78889999877776632 1122344567766655544 33344 2221 1134555544433 67
Q ss_pred cceEEEEEc
Q 042303 498 GYYLLYVVY 506 (519)
Q Consensus 498 G~ymlf~~~ 506 (519)
|.|-|.++.
T Consensus 75 G~~~i~~~i 83 (101)
T PF07705_consen 75 GSYTIRVVI 83 (101)
T ss_dssp CEEEEEEEE
T ss_pred CeEEEEEEE
Confidence 888877763
No 154
>PRK01029 tolB translocation protein TolB; Provisional
Probab=23.21 E-value=9.2e+02 Score=25.61 Aligned_cols=58 Identities=14% Similarity=0.016 Sum_probs=35.1
Q ss_pred CCeeccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCCCccccceEEEcCCCcEEEEc
Q 042303 73 SGGLTVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALAEPRWYSTQVTLPDGGFIVVG 134 (519)
Q Consensus 73 ~~~~l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~~~R~y~s~~~L~dG~V~viG 134 (519)
.....+||+.+++-....+...+.++|+. +.+...+.. - .+......--+||+.++.-
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~-~g~~~~Lt~-~--~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLA-TGRDYQLTT-S--PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECC-CCCeEEccC-C--CCCccceEECCCCCEEEEE
Confidence 34567899877765544455689999998 666655542 1 1222233445688766543
No 155
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.34 E-value=1.7e+02 Score=18.08 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=12.2
Q ss_pred ceeeeEcCCCcEEEecC
Q 042303 362 HSVSVLLPDGKVLIAGS 378 (519)
Q Consensus 362 hs~a~LlpdG~V~v~GG 378 (519)
|+.|+. ++|+|||+=.
T Consensus 5 ~gvav~-~~g~i~VaD~ 20 (28)
T PF01436_consen 5 HGVAVD-SDGNIYVADS 20 (28)
T ss_dssp EEEEEE-TTSEEEEEEC
T ss_pred cEEEEe-CCCCEEEEEC
Confidence 566665 9999999853
No 156
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=21.61 E-value=1e+02 Score=19.09 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=15.6
Q ss_pred eeeceeEEecCCcEEEEcCcC
Q 042303 300 RVMGDMTILPTGDVLLVNGAQ 320 (519)
Q Consensus 300 R~~~~~vvLpdG~V~viGG~~ 320 (519)
+.+|.=.++.|++..++|+.+
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N 23 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSAN 23 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCcc
Confidence 345555667799999999875
No 157
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=21.42 E-value=1e+03 Score=25.61 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=32.9
Q ss_pred ccCCeEEEecCCCCCCceEEEEeCCCCCccccCCCCCC-CccccceEEEcC---CCcEEEEcCCCC
Q 042303 77 TVDGHLVGTGGYQGGANTVRYLWTCDTCDWIEYPTALA-EPRWYSTQVTLP---DGGFIVVGGRGA 138 (519)
Q Consensus 77 l~dG~llv~GG~~~g~~~v~~ydp~~~~~W~~~~~~m~-~~R~y~s~~~L~---dG~V~viGG~~~ 138 (519)
.++|..++.|+-. .+++++.-. +..- |. ..+.|.+.+.|. ||+.|+.||.++
T Consensus 90 ~n~G~~l~ag~i~---g~lYlWels-sG~L------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 90 SNLGYFLLAGTIS---GNLYLWELS-SGIL------LNVLSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred CCCceEEEeeccc---CcEEEEEec-cccH------HHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence 3468877777643 355555544 3221 22 246788877663 899999999876
No 158
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=21.28 E-value=5e+02 Score=25.81 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=25.6
Q ss_pred eeEEEEECCCCcEEEC-ccCCCcccCC-------CeeccCCeEEEecCC
Q 042303 48 AHSVLFDIETAKLKPL-KIQTDTWCSS-------GGLTVDGHLVGTGGY 88 (519)
Q Consensus 48 ~~~~~yDp~t~~w~~l-~~~~~~~c~~-------~~~l~dG~llv~GG~ 88 (519)
..+.+||.+|.+-..+ .+..+.-|.- +++-.|..+++.||-
T Consensus 178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG 226 (325)
T KOG0649|consen 178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG 226 (325)
T ss_pred ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC
Confidence 3456899999887654 3332222211 455568889999984
No 159
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=20.95 E-value=8.8e+02 Score=24.55 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=28.5
Q ss_pred ccEEEeCCCCCcceeeecCCCCcC-CccceeeeEcCCCcEEEecCCCCC
Q 042303 335 APALYKTKEKRHHRFQELAPTTIP-RMYHSVSVLLPDGKVLIAGSNTHD 382 (519)
Q Consensus 335 ~~e~YdP~t~~g~~W~~~~~~~~~-R~yhs~a~LlpdG~V~v~GG~~~~ 382 (519)
++-+||-.+- .+..+-+. -.|-.+..+-|||.+.+.||..+.
T Consensus 173 tvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 173 TVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred eEEEEccCCc------chhhccccccccEEEEEECCCCCEEecCCCCce
Confidence 5688987765 23333333 235556677899999999998764
No 160
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.40 E-value=9.8e+02 Score=24.91 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred cceEEEeeCCcEEEEeCC---------c---eEEeeCCCCeEEEEccCCCCCCC--ccCCCCcEEecccccccCCccccC
Q 042303 184 YPFVNLVTDGNLFIFSNN---------R---SILFDPKANRVIREYPVLTGGSR--NYPASGMSVLLPIKLHAGHQKIIH 249 (519)
Q Consensus 184 yp~~~~~~~G~Ifv~Gg~---------~---~~~yDp~t~~w~~~~p~~p~~~r--~~~~~g~av~l~l~~~~~~~~~~~ 249 (519)
.|+..+.+||+.+.++.. + ..+||..+.+-..+++ +|..+| .-+......+-| +
T Consensus 48 ~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~-----------d 115 (352)
T TIGR02658 48 LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE-LPEGPRFLVGTYPWMTSLTP-----------D 115 (352)
T ss_pred CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc-cCCCchhhccCccceEEECC-----------C
Q ss_pred CeEEEEcCCCCCcccccccccccccCCCceEEEEecCCCCceEec-cCCcceeecee------EEecCCcEEEE
Q 042303 250 SDILVCGGAAWDAFYYAEDKKQFWPALQDCGRIRITEPNPVWKKE-MMPTRRVMGDM------TILPTGDVLLV 316 (519)
Q Consensus 250 gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~------vvLpdG~V~vi 316 (519)
||.+.+--.+ ..+++..+|+. +.+-..+ +.+.++....+ +...||+.+.+
T Consensus 116 gk~l~V~n~~---------------p~~~V~VvD~~--~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 116 NKTLLFYQFS---------------PSPAVGVVDLE--GKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred CCEEEEecCC---------------CCCEEEEEECC--CCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEE
No 161
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=20.40 E-value=4e+02 Score=27.06 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=33.2
Q ss_pred CCCcccCCCeeccC---C-eEEEecCCCC--CC--ceEEEEeCCCCCccccCCCCCCC-c--cccceEEEcCC-----Cc
Q 042303 66 QTDTWCSSGGLTVD---G-HLVGTGGYQG--GA--NTVRYLWTCDTCDWIEYPTALAE-P--RWYSTQVTLPD-----GG 129 (519)
Q Consensus 66 ~~~~~c~~~~~l~d---G-~llv~GG~~~--g~--~~v~~ydp~~~~~W~~~~~~m~~-~--R~y~s~~~L~d-----G~ 129 (519)
..+..|.++..... | +++++.-... .. -.+++.+-. ..+|..... +.. . -.|.+.+.+.| +.
T Consensus 252 ~~~~g~~~~~i~~~~~~g~~~ll~~~~~~~~~R~~l~l~~s~d~-g~~w~~~~~-i~~~~~~~~Ys~~~~~~~~~~~~~~ 329 (351)
T cd00260 252 RCGSGVQGSFITATIESGKKVMLLSRPNSPDSRSNLTLWLTDNN-GSRWLDVGP-ISNGTDGSGYSTLTELPDTGDSCGY 329 (351)
T ss_pred CCCCcccceEEEeEecCCCEEEEEeCCCCCCCCCceEEEEEeCC-CceEEeeee-eccCCCceEEeeeeecCCccCCCCE
Confidence 34556765544321 3 4555443221 11 134444433 357876543 322 2 46888888877 66
Q ss_pred EEEE
Q 042303 130 FIVV 133 (519)
Q Consensus 130 V~vi 133 (519)
++++
T Consensus 330 ~~~l 333 (351)
T cd00260 330 LGLL 333 (351)
T ss_pred EEEE
Confidence 6655
No 162
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=20.24 E-value=2.4e+02 Score=26.40 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=35.6
Q ss_pred EecCCcEEEEcCcCCCCCCccCCCCCccccEEEeCCCCCcceeeecCCCCcCCccceeeeEcCCCcEEEecC
Q 042303 307 ILPTGDVLLVNGAQNGTSAWNDAEEPALAPALYKTKEKRHHRFQELAPTTIPRMYHSVSVLLPDGKVLIAGS 378 (519)
Q Consensus 307 vLpdG~V~viGG~~~g~~g~~~~~~~~~~~e~YdP~t~~g~~W~~~~~~~~~R~yhs~a~LlpdG~V~v~GG 378 (519)
=-|+|+.++++|... .. -.+++||..+. +.+....... .+...--||||-+++-.
T Consensus 108 wsP~G~~l~~~g~~n-~~---------G~l~~wd~~~~-----~~i~~~~~~~--~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 108 WSPDGRFLVLAGFGN-LN---------GDLEFWDVRKK-----KKISTFEHSD--ATDVEWSPDGRYLATAT 162 (194)
T ss_pred ECCCCCEEEEEEccC-CC---------cEEEEEECCCC-----EEeeccccCc--EEEEEEcCCCCEEEEEE
Confidence 359999999999642 11 15789997744 4444443332 23344679999988765
No 163
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=20.17 E-value=4.4e+02 Score=20.80 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=41.4
Q ss_pred CccccCceEEEEEEeccccccceEEEEEEeCCcccccCCCCCceEEeeeeeeeecCCCCcEEEEEEcCCCCCcCCCcceE
Q 042303 422 CMVGYGQRISIQVKTTEGIKQSDIRITMYAPAFTTHGTSMNQRLVILGLVEVRNDVAPGQHKIVAEAPPSGVITPPGYYL 501 (519)
Q Consensus 422 ~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~~~~~ppG~ym 501 (519)
+.+..|+.++|+-+... .......+.|+.... +. -+-...| .... +... .++++++|+ ++.+-+.|.
T Consensus 7 ~~~~~g~~~~I~W~~~~-~~~~~~~I~L~~g~~-~~----~~~~~~i--a~~v-~~~~--gs~~~~~p~--~l~~~~~Y~ 73 (93)
T PF10342_consen 7 TVWTAGQPITITWTSDG-TDPGNVTIYLCNGNN-TN----LNFVQTI--ASNV-SNSD--GSYTWTIPS--DLPSGGDYF 73 (93)
T ss_pred CEEECCCcEEEEEeCCC-CCCcEEEEEEEcCCC-CC----cceeEEE--Eecc-cCCC--CEEEEEcCC--CCCCCCcEE
Confidence 66888999999987432 245678899987765 11 1111222 2111 1122 456677765 465556666
Q ss_pred EEEEc
Q 042303 502 LYVVY 506 (519)
Q Consensus 502 lf~~~ 506 (519)
|-+++
T Consensus 74 i~~~~ 78 (93)
T PF10342_consen 74 IQIVN 78 (93)
T ss_pred EEEEE
Confidence 66665
Done!