BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042307
(1314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 1094 ELKKLEIDNVQVLSNLEELTLSEHNFTIWQQAQF---HKLKVLHVIFDGSAFFQVGLLQN 1150
LK + + LSNL +L +SE+ I F + LK L V + +
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 1151 IPNLEKLLLSNCPCGKIFSCGEVEEHAERVARIKSLKLNKLWGLE-EHLWRPDSNLNSFL 1209
+ +LE+L L C I + H V R++ L +N + + L+R
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR--------- 201
Query: 1210 QTLEILEVKKCWDSLINLLPSSASFRNLTVLKVCHCWLLISLVTPQTAKTLVQLRELRVS 1269
L++LE+ W L + P+ NLT L + HC L + V + LV LR L +S
Sbjct: 202 --LKVLEISH-WPYLDTMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLS 256
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 81 LVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLV-GALNESEAWD 139
L+ILD++W L+ D C +L+T R + V S M ++ V L + +
Sbjct: 239 LLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLE 293
Query: 140 LFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALREL 194
+ V K E DL A A I K C G P+ + I LR+ W LR+L
Sbjct: 294 ILSLFVNMKKE--DLPAEAHSIIKECKGSPLVVSLIGALLRDFPN-RWAYYLRQL 345
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 32/180 (17%)
Query: 402 NLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREI-GQLTRLRSLNLSSCYQLK 460
N+R L L L D++ + EL L L G+ ++ LP + +LT L+ L L QL+
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQ 122
Query: 461 AISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520
++ V L+ L LYL +Q +G L++L L++ +
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKG------------VFDKLTNLTRLDLDNNQLQ 170
Query: 521 VLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWL 580
LP+G VF D + L L N + D F +L L +WL
Sbjct: 171 SLPEG----------VF--------DKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 81 LVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLV-GALNESEAWD 139
L+ILD++W + L+ D C +L+T R + V S M + V +L + + +
Sbjct: 239 LLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 293
Query: 140 LFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRN-KNTFEW------KNALR 192
+ V ++ DL A I K C G P+ + I LR+ N +E+ +
Sbjct: 294 ILSLFVN--MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFK 351
Query: 193 ELTRPSSSSFSGVPAEAYKSIEL 215
+ + SS + + S+E+
Sbjct: 352 RIRKSSSYDYEALDEAMSISVEM 374
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 32/182 (17%)
Query: 402 NLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREI-GQLTRLRSLNLSSCYQLK 460
N+R L L L D++ + EL L L G+ ++ LP + +LT L+ L L QL+
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQ 122
Query: 461 AISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520
++ V L+ L L L +Q +G L++L L++ +
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKG------------VFDKLTNLTELDLSYNQLQ 170
Query: 521 VLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWL 580
LP+G VF D + L+L N + D F +L L+ +WL
Sbjct: 171 SLPEG----------VF--------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
Query: 581 DE 582
+
Sbjct: 213 HD 214
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 81 LVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLV-GALNESEAWD 139
L+ILD++W L+ D C +L+T + V S M ++ V L + +
Sbjct: 246 LLILDDVWDPWVLKAF-----DNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLE 300
Query: 140 LFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALREL 194
+ V K E DL A A I K C G P+ + I LR+ W LR+L
Sbjct: 301 ILSLFVNMKKE--DLPAEAHSIIKECKGSPLVVSLIGALLRDFPN-RWAYYLRQL 352
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 116
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 176
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 177 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 208
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 81 LVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLV-GALNESEAWD 139
L+ILD++W + L+ D C +L+T R + V S M + V +L + + +
Sbjct: 245 LLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 299
Query: 140 LFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRN-KNTFEW------KNALR 192
+ V ++ DL A I K C G P+ + I LR+ N +E+ +
Sbjct: 300 ILSLFVN--MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFK 357
Query: 193 ELTRPSSSSFSGVPAEAYKSIEL 215
+ + SS + + S+E+
Sbjct: 358 RIRKSSSYDYEALDEAMSISVEM 380
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSL 115
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L L LD L + V G L L L + ++ LP L L L++S +L ++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 463 SSNVISNLSQLEELYLGDTFIQWETEG--QSSSERSRASLHE----------LKHLSSLN 510
+ L +L+ELYL ++ G + + + SL L L +L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542
TL +Q +PKGF L + G+ W
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 402 NLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKA 461
+L +L + + +L D ++++L + I+ +P+++ +L L+ LN++S QLK+
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS-NQLKS 458
Query: 462 ISSNVISNLSQLEELYL 478
+ + L+ L++++L
Sbjct: 459 VPDGIFDRLTSLQKIWL 475
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 424 QLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGD 480
++++L + I +P+++ L L+ LN++S QLK++ V L+ L+ ++L D
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD 506
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 403 LRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAI 462
L +L + N + D++ + L QL L + I + + LT+L+ LN+ S Q+ I
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKXLNVGSN-QISDI 280
Query: 463 SSNVISNLSQLEELYLGD 480
S V++NLSQL L+L +
Sbjct: 281 S--VLNNLSQLNSLFLNN 296
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 653 SFIRLRNLKVESCEKLTHIFSFSIS-------RGLPQLQTI--EVIACKSMKHIFVVGRE 703
S RLR L + +C +LT + S +GL LQ++ E +S+
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA------- 200
Query: 704 DDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPA 763
I N + L+ L +++ P ++ P LE L L + P
Sbjct: 201 -SIANLQ--------NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA----LRNYPP 247
Query: 764 MSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMDL 808
+ L RLI+ CSNL L + L QL+ L++R C++L
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNL 290
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDF------TDMXXXXXXXXXXXXVNLR 404
ECP+L+ ++ +K P + F L LRVL+ T +NL+
Sbjct: 397 ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQ 456
Query: 405 TLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAIS 463
+G + ++ + LEIL N+ + ++ L + L+LS +++
Sbjct: 457 GNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSH----NSLT 512
Query: 464 SNVISNLSQLEELYL 478
+ + LS L+ LYL
Sbjct: 513 GDSMDALSHLKGLYL 527
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,298,375
Number of Sequences: 62578
Number of extensions: 1309019
Number of successful extensions: 3074
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 3026
Number of HSP's gapped (non-prelim): 100
length of query: 1314
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1204
effective length of database: 8,089,757
effective search space: 9740067428
effective search space used: 9740067428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)