Query 042307
Match_columns 1314
No_of_seqs 617 out of 6221
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.3E-65 1.4E-69 616.6 32.2 475 1-515 181-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 4E-56 8.6E-61 576.3 46.0 658 1-811 209-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 5.2E-34 1.1E-38 373.7 30.0 509 330-1045 68-582 (968)
4 PF00931 NB-ARC: NB-ARC domain 100.0 3.4E-34 7.5E-39 319.1 14.1 253 1-258 21-284 (287)
5 PLN00113 leucine-rich repeat r 100.0 5.7E-33 1.2E-37 363.9 27.1 511 353-1079 69-583 (968)
6 KOG4194 Membrane glycoprotein 99.9 6.7E-24 1.5E-28 228.6 7.1 390 330-779 51-449 (873)
7 KOG4194 Membrane glycoprotein 99.9 3.2E-24 6.9E-29 231.1 3.3 341 328-692 75-427 (873)
8 KOG0618 Serine/threonine phosp 99.8 1.5E-22 3.4E-27 231.0 -0.7 143 336-481 3-147 (1081)
9 PLN03210 Resistant to P. syrin 99.8 9.2E-20 2E-24 237.7 24.0 343 329-734 556-909 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 8.8E-24 1.9E-28 217.7 -14.0 175 333-524 47-223 (565)
11 KOG0444 Cytoskeletal regulator 99.8 2.4E-22 5.2E-27 217.7 -3.9 365 328-784 4-377 (1255)
12 KOG0472 Leucine-rich repeat pr 99.8 9.7E-24 2.1E-28 217.4 -15.1 393 328-785 65-473 (565)
13 KOG0618 Serine/threonine phosp 99.8 5.5E-21 1.2E-25 218.5 -0.7 461 333-1045 23-487 (1081)
14 KOG0444 Cytoskeletal regulator 99.8 1.6E-21 3.4E-26 211.5 -5.0 340 328-733 29-377 (1255)
15 KOG0617 Ras suppressor protein 99.6 3.8E-18 8.2E-23 155.1 -5.7 167 343-526 23-192 (264)
16 KOG0617 Ras suppressor protein 99.6 7.7E-17 1.7E-21 146.7 -5.1 155 327-485 29-187 (264)
17 KOG4237 Extracellular matrix p 99.5 1E-15 2.2E-20 158.8 -2.8 287 335-637 50-355 (498)
18 PRK15387 E3 ubiquitin-protein 99.4 9.9E-13 2.1E-17 157.9 16.7 157 333-524 203-359 (788)
19 PRK15387 E3 ubiquitin-protein 99.4 1.6E-12 3.5E-17 156.1 17.7 237 328-638 219-455 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 1E-12 2.3E-17 159.2 13.5 164 330-523 177-341 (754)
21 PRK15370 E3 ubiquitin-protein 99.4 2.5E-12 5.5E-17 155.9 12.7 228 328-610 196-426 (754)
22 KOG4237 Extracellular matrix p 99.3 7.7E-14 1.7E-18 145.1 -1.4 265 326-612 62-359 (498)
23 KOG4341 F-box protein containi 99.3 1.3E-13 2.7E-18 145.0 -5.5 322 601-1043 140-461 (483)
24 PRK04841 transcriptional regul 99.2 9.1E-10 2E-14 144.6 22.3 268 1-306 34-333 (903)
25 KOG4658 Apoptotic ATPase [Sign 99.1 4.6E-11 1E-15 147.4 8.0 129 375-518 520-653 (889)
26 PF05729 NACHT: NACHT domain 99.1 8.6E-10 1.9E-14 111.7 12.3 139 1-145 2-163 (166)
27 KOG4341 F-box protein containi 99.0 5.5E-12 1.2E-16 132.9 -5.4 149 892-1049 292-441 (483)
28 TIGR03015 pepcterm_ATPase puta 99.0 1.8E-08 3.9E-13 110.9 20.5 176 1-179 45-242 (269)
29 COG2909 MalT ATP-dependent tra 99.0 7.7E-09 1.7E-13 120.2 17.8 271 1-308 39-341 (894)
30 cd00116 LRR_RI Leucine-rich re 99.0 2.6E-10 5.6E-15 129.9 5.6 181 330-520 22-234 (319)
31 KOG0532 Leucine-rich repeat (L 98.9 4.5E-11 9.7E-16 130.8 -3.6 180 328-526 72-253 (722)
32 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.8E-15 116.5 -0.4 135 376-524 282-416 (490)
33 KOG0532 Leucine-rich repeat (L 98.9 4.3E-11 9.3E-16 130.9 -4.1 150 329-484 96-247 (722)
34 PF14580 LRR_9: Leucine-rich r 98.9 6.9E-10 1.5E-14 108.7 3.9 130 375-515 16-148 (175)
35 cd00116 LRR_RI Leucine-rich re 98.9 7.1E-10 1.5E-14 126.2 4.4 159 351-520 21-206 (319)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.8E-09 3.9E-14 105.7 5.6 121 331-454 19-148 (175)
37 PRK00411 cdc6 cell division co 98.8 4.7E-07 1E-11 105.9 21.6 263 2-284 58-357 (394)
38 KOG1259 Nischarin, modulator o 98.7 1.2E-09 2.5E-14 109.8 -1.4 106 376-484 305-412 (490)
39 COG4886 Leucine-rich repeat (L 98.6 3.6E-08 7.7E-13 115.4 5.7 176 331-524 116-294 (394)
40 KOG3207 Beta-tubulin folding c 98.6 6.4E-09 1.4E-13 110.9 -0.6 180 329-520 144-339 (505)
41 TIGR02928 orc1/cdc6 family rep 98.6 3.8E-06 8.2E-11 97.1 21.3 264 2-284 43-349 (365)
42 COG4886 Leucine-rich repeat (L 98.5 7.2E-08 1.6E-12 112.9 5.8 173 335-524 97-272 (394)
43 PF13401 AAA_22: AAA domain; P 98.5 2.6E-07 5.7E-12 88.8 7.6 113 1-113 6-125 (131)
44 COG2256 MGS1 ATPase related to 98.5 5.8E-06 1.2E-10 88.6 16.6 196 3-224 52-267 (436)
45 PF01637 Arch_ATPase: Archaeal 98.4 8.1E-07 1.8E-11 95.9 9.9 172 1-174 22-233 (234)
46 PRK06893 DNA replication initi 98.4 1.3E-06 2.7E-11 92.3 10.6 147 2-177 42-205 (229)
47 COG3903 Predicted ATPase [Gene 98.3 1E-06 2.2E-11 95.1 8.1 286 2-307 17-316 (414)
48 TIGR00635 ruvB Holliday juncti 98.3 2.5E-05 5.5E-10 87.6 19.6 164 2-177 33-203 (305)
49 KOG3207 Beta-tubulin folding c 98.3 1.6E-07 3.5E-12 100.4 1.6 155 329-484 170-339 (505)
50 PF13173 AAA_14: AAA domain 98.3 7.7E-07 1.7E-11 84.4 5.3 116 1-136 4-126 (128)
51 PRK00080 ruvB Holliday junctio 98.3 7.9E-05 1.7E-09 83.9 22.0 247 2-285 54-310 (328)
52 PLN03150 hypothetical protein; 98.3 2.1E-06 4.6E-11 104.8 9.5 104 379-483 419-527 (623)
53 PF13855 LRR_8: Leucine rich r 98.3 8.7E-07 1.9E-11 71.0 3.9 58 354-412 2-60 (61)
54 COG1474 CDC6 Cdc6-related prot 98.2 4.9E-05 1.1E-09 85.1 18.9 173 2-175 45-238 (366)
55 PF13855 LRR_8: Leucine rich r 98.2 8E-07 1.7E-11 71.2 3.1 58 424-482 2-60 (61)
56 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.4E-12 108.8 -0.9 107 375-484 92-199 (414)
57 TIGR03420 DnaA_homol_Hda DnaA 98.2 7.3E-06 1.6E-10 87.5 10.3 149 2-178 41-204 (226)
58 PLN03150 hypothetical protein; 98.2 3.7E-06 8E-11 102.8 9.0 104 402-518 419-526 (623)
59 KOG1859 Leucine-rich repeat pr 98.2 3.2E-08 6.9E-13 111.8 -8.4 180 327-523 105-295 (1096)
60 PRK09087 hypothetical protein; 98.2 1.7E-05 3.6E-10 83.0 12.1 135 2-174 47-194 (226)
61 PF00308 Bac_DnaA: Bacterial d 98.1 1.3E-05 2.7E-10 83.7 10.9 159 2-177 37-210 (219)
62 PTZ00112 origin recognition co 98.1 5E-05 1.1E-09 90.0 16.6 176 2-179 784-986 (1164)
63 PRK08727 hypothetical protein; 98.1 1.9E-05 4E-10 83.6 11.0 143 2-172 44-201 (233)
64 PRK14087 dnaA chromosomal repl 98.0 3.7E-05 8E-10 89.3 13.1 161 2-177 144-321 (450)
65 cd01128 rho_factor Transcripti 98.0 1.4E-05 3.1E-10 84.1 8.6 88 2-90 19-115 (249)
66 PRK09376 rho transcription ter 98.0 1.8E-05 3.8E-10 86.5 8.5 88 2-90 172-268 (416)
67 PRK13342 recombination factor 98.0 5.1E-05 1.1E-09 88.2 12.9 151 2-176 39-197 (413)
68 PRK08084 DNA replication initi 97.9 6.2E-05 1.3E-09 79.8 11.5 147 2-176 48-210 (235)
69 KOG2028 ATPase related to the 97.9 0.00017 3.7E-09 75.7 14.0 148 2-169 165-330 (554)
70 TIGR00678 holB DNA polymerase 97.9 0.00011 2.4E-09 75.4 12.9 142 2-171 17-187 (188)
71 PRK15386 type III secretion pr 97.9 1.6E-05 3.5E-10 87.8 7.0 15 1009-1023 73-87 (426)
72 PRK06645 DNA polymerase III su 97.9 0.00011 2.3E-09 85.8 14.1 147 2-170 46-224 (507)
73 KOG2120 SCF ubiquitin ligase, 97.9 5.5E-07 1.2E-11 91.2 -4.3 78 379-456 186-270 (419)
74 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 58.5 3.6 39 379-417 2-40 (44)
75 KOG2120 SCF ubiquitin ligase, 97.9 5.4E-07 1.2E-11 91.2 -4.5 173 331-517 185-373 (419)
76 PRK05642 DNA replication initi 97.9 7.1E-05 1.5E-09 79.2 10.9 150 2-179 48-212 (234)
77 PRK04195 replication factor C 97.9 0.00054 1.2E-08 81.5 19.5 155 2-177 42-205 (482)
78 KOG1909 Ran GTPase-activating 97.9 4.9E-06 1.1E-10 87.0 1.7 181 330-520 91-311 (382)
79 PF12799 LRR_4: Leucine Rich r 97.9 2.2E-05 4.7E-10 57.0 4.4 41 423-464 1-41 (44)
80 PF14516 AAA_35: AAA-like doma 97.9 0.00057 1.2E-08 76.5 18.0 174 2-182 34-246 (331)
81 PRK15386 type III secretion pr 97.9 2.3E-05 5E-10 86.7 6.5 137 890-1077 48-187 (426)
82 KOG2982 Uncharacterized conser 97.9 4.8E-06 1E-10 84.5 1.2 66 597-668 197-262 (418)
83 TIGR01242 26Sp45 26S proteasom 97.8 0.00024 5.2E-09 81.4 14.8 145 2-168 159-327 (364)
84 KOG0531 Protein phosphatase 1, 97.8 3.2E-06 7E-11 98.7 -0.7 103 330-436 94-199 (414)
85 PRK14963 DNA polymerase III su 97.8 0.00031 6.6E-09 82.6 15.5 162 2-172 39-214 (504)
86 PRK12323 DNA polymerase III su 97.8 0.00016 3.5E-09 84.4 12.8 149 2-172 41-222 (700)
87 PRK14961 DNA polymerase III su 97.8 0.00029 6.3E-09 80.2 14.6 148 2-171 41-216 (363)
88 PF05496 RuvB_N: Holliday junc 97.8 0.00021 4.5E-09 71.8 11.4 141 2-171 53-217 (233)
89 TIGR00362 DnaA chromosomal rep 97.8 0.00026 5.6E-09 82.5 14.2 155 2-173 139-308 (405)
90 TIGR00767 rho transcription te 97.8 9.2E-05 2E-09 81.6 9.6 88 2-90 171-267 (415)
91 COG1222 RPT1 ATP-dependent 26S 97.8 0.00047 1E-08 73.1 13.9 169 2-194 188-392 (406)
92 PRK14949 DNA polymerase III su 97.8 0.00026 5.5E-09 85.8 13.6 156 2-175 41-221 (944)
93 PRK07003 DNA polymerase III su 97.7 0.0005 1.1E-08 81.6 15.6 152 2-175 41-221 (830)
94 PRK14960 DNA polymerase III su 97.7 0.00032 7E-09 82.2 13.9 147 2-170 40-214 (702)
95 PRK14088 dnaA chromosomal repl 97.7 0.00036 7.8E-09 81.2 14.0 177 2-194 133-332 (440)
96 PRK12402 replication factor C 97.7 0.00031 6.8E-09 80.3 13.5 171 2-173 39-224 (337)
97 PRK14957 DNA polymerase III su 97.7 0.00045 9.8E-09 81.2 14.7 158 2-177 41-223 (546)
98 cd00009 AAA The AAA+ (ATPases 97.7 0.00011 2.5E-09 72.5 8.3 101 1-115 21-131 (151)
99 PLN03025 replication factor C 97.7 0.00031 6.6E-09 78.8 12.6 158 2-174 37-200 (319)
100 PRK14956 DNA polymerase III su 97.7 0.00025 5.4E-09 80.8 11.7 166 2-175 43-223 (484)
101 PRK08903 DnaA regulatory inact 97.7 0.00019 4.1E-09 76.4 10.2 146 2-179 45-203 (227)
102 PRK14964 DNA polymerase III su 97.7 0.00064 1.4E-08 78.7 15.1 152 2-171 38-213 (491)
103 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.6E-10 96.2 2.3 105 331-436 122-233 (699)
104 KOG1859 Leucine-rich repeat pr 97.7 8.1E-07 1.8E-11 100.8 -8.3 125 329-456 162-289 (1096)
105 PRK09112 DNA polymerase III su 97.7 0.00053 1.1E-08 76.7 13.6 166 2-174 48-239 (351)
106 PRK14086 dnaA chromosomal repl 97.7 0.00059 1.3E-08 80.2 14.2 155 2-173 317-486 (617)
107 PRK05564 DNA polymerase III su 97.6 0.00067 1.5E-08 75.9 14.4 150 2-173 29-188 (313)
108 KOG3665 ZYG-1-like serine/thre 97.6 2.7E-05 5.9E-10 94.4 3.4 133 351-483 120-262 (699)
109 PRK00149 dnaA chromosomal repl 97.6 0.00041 8.9E-09 81.9 13.0 175 2-194 151-349 (450)
110 PF05621 TniB: Bacterial TniB 97.6 0.00092 2E-08 70.8 13.9 172 2-173 64-259 (302)
111 TIGR03689 pup_AAA proteasome A 97.6 0.00072 1.6E-08 78.6 14.5 133 2-147 219-380 (512)
112 PRK14962 DNA polymerase III su 97.6 0.00072 1.6E-08 78.8 14.6 160 2-179 39-223 (472)
113 PRK07940 DNA polymerase III su 97.6 0.00098 2.1E-08 75.6 14.6 145 2-173 39-211 (394)
114 PRK03992 proteasome-activating 97.6 0.00052 1.1E-08 78.7 12.6 145 2-168 168-336 (389)
115 PTZ00454 26S protease regulato 97.6 0.0015 3.2E-08 74.5 15.9 145 2-168 182-350 (398)
116 PRK08691 DNA polymerase III su 97.6 0.00065 1.4E-08 80.6 13.3 152 2-175 41-221 (709)
117 PRK14969 DNA polymerase III su 97.6 0.00072 1.6E-08 80.4 13.6 152 2-175 41-221 (527)
118 PRK07994 DNA polymerase III su 97.6 0.00071 1.5E-08 80.8 13.4 152 2-175 41-221 (647)
119 PRK13341 recombination factor 97.5 0.00044 9.5E-09 84.6 11.4 145 2-170 55-212 (725)
120 PRK05896 DNA polymerase III su 97.5 0.00079 1.7E-08 79.1 12.9 166 2-175 41-221 (605)
121 PRK00440 rfc replication facto 97.5 0.0019 4.1E-08 73.3 15.8 153 2-171 41-199 (319)
122 PRK14951 DNA polymerase III su 97.5 0.0011 2.4E-08 79.1 14.2 165 2-171 41-221 (618)
123 KOG1947 Leucine rich repeat pr 97.5 1.5E-05 3.3E-10 96.9 -2.2 40 768-807 242-281 (482)
124 KOG1947 Leucine rich repeat pr 97.5 8E-06 1.7E-10 99.3 -4.8 120 920-1047 187-308 (482)
125 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0013 2.9E-08 74.2 12.7 125 2-146 548-693 (802)
126 PRK06620 hypothetical protein; 97.4 0.00069 1.5E-08 70.3 9.9 133 2-173 47-187 (214)
127 PRK14958 DNA polymerase III su 97.4 0.0015 3.3E-08 77.0 13.9 152 2-171 41-216 (509)
128 PF00004 AAA: ATPase family as 97.4 0.00022 4.7E-09 68.6 5.8 69 2-90 1-70 (132)
129 PRK12422 chromosomal replicati 97.4 0.0016 3.5E-08 75.6 13.0 149 2-169 144-307 (445)
130 PRK07133 DNA polymerase III su 97.4 0.0022 4.8E-08 77.1 14.4 153 2-176 43-221 (725)
131 PTZ00361 26 proteosome regulat 97.4 0.00077 1.7E-08 77.2 10.2 125 2-146 220-368 (438)
132 KOG1909 Ran GTPase-activating 97.4 9.1E-05 2E-09 77.8 2.5 127 330-456 156-308 (382)
133 PTZ00202 tuzin; Provisional 97.4 0.0037 7.9E-08 69.1 14.6 135 1-145 288-434 (550)
134 PRK09111 DNA polymerase III su 97.4 0.0022 4.8E-08 76.8 14.3 167 2-173 49-231 (598)
135 PRK14959 DNA polymerase III su 97.4 0.0018 3.9E-08 76.7 13.2 156 2-179 41-225 (624)
136 COG3899 Predicted ATPase [Gene 97.3 0.0026 5.6E-08 80.2 15.3 164 122-307 209-388 (849)
137 TIGR02881 spore_V_K stage V sp 97.3 0.00049 1.1E-08 74.6 7.9 129 2-146 45-192 (261)
138 PRK08451 DNA polymerase III su 97.3 0.0039 8.5E-08 73.0 15.4 154 2-173 39-216 (535)
139 KOG4579 Leucine-rich repeat (L 97.3 2.3E-05 5E-10 70.2 -2.2 90 375-465 50-141 (177)
140 PRK14953 DNA polymerase III su 97.3 0.0036 7.9E-08 73.4 15.1 151 2-174 41-219 (486)
141 PRK07471 DNA polymerase III su 97.3 0.004 8.8E-08 70.1 14.9 168 2-175 44-238 (365)
142 CHL00176 ftsH cell division pr 97.3 0.0044 9.6E-08 74.9 16.0 144 2-167 219-386 (638)
143 COG0593 DnaA ATPase involved i 97.3 0.0026 5.7E-08 71.0 12.9 149 1-167 115-278 (408)
144 PRK14954 DNA polymerase III su 97.3 0.0028 6.2E-08 76.0 14.0 172 2-174 41-228 (620)
145 smart00382 AAA ATPases associa 97.3 0.00066 1.4E-08 66.6 7.5 88 1-91 4-91 (148)
146 PRK14955 DNA polymerase III su 97.3 0.0021 4.5E-08 74.3 12.5 169 2-171 41-224 (397)
147 KOG1644 U2-associated snRNP A' 97.3 0.00062 1.4E-08 66.0 6.6 101 353-456 42-150 (233)
148 PRK14971 DNA polymerase III su 97.3 0.0044 9.5E-08 75.0 15.4 155 2-175 42-223 (614)
149 CHL00181 cbbX CbbX; Provisiona 97.2 0.0064 1.4E-07 66.3 15.2 126 2-146 62-210 (287)
150 KOG1644 U2-associated snRNP A' 97.2 0.00049 1.1E-08 66.6 5.7 101 378-480 42-149 (233)
151 PRK14952 DNA polymerase III su 97.2 0.0043 9.4E-08 73.9 14.8 154 2-177 38-222 (584)
152 TIGR02397 dnaX_nterm DNA polym 97.2 0.0045 9.7E-08 71.3 14.8 155 2-175 39-218 (355)
153 PF04665 Pox_A32: Poxvirus A32 97.2 0.0038 8.2E-08 64.7 12.3 34 2-37 16-49 (241)
154 PRK08116 hypothetical protein; 97.2 0.001 2.2E-08 71.7 8.6 98 2-114 117-221 (268)
155 PRK07764 DNA polymerase III su 97.2 0.004 8.6E-08 77.4 14.8 147 2-170 40-216 (824)
156 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0029 6.2E-08 73.9 12.7 147 2-168 262-428 (489)
157 KOG2227 Pre-initiation complex 97.2 0.016 3.5E-07 64.1 17.3 176 2-178 178-375 (529)
158 PRK05707 DNA polymerase III su 97.2 0.006 1.3E-07 67.8 14.4 147 2-174 25-202 (328)
159 KOG4579 Leucine-rich repeat (L 97.2 3.8E-05 8.1E-10 68.9 -2.5 108 333-441 29-141 (177)
160 PRK14948 DNA polymerase III su 97.1 0.0064 1.4E-07 73.6 15.2 166 2-173 41-220 (620)
161 PRK14970 DNA polymerase III su 97.1 0.0069 1.5E-07 69.8 15.0 151 2-170 42-204 (367)
162 PRK12608 transcription termina 97.1 0.0028 6.1E-08 69.7 10.9 88 2-90 136-232 (380)
163 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0077 1.7E-07 68.4 14.3 142 2-168 226-395 (802)
164 TIGR01241 FtsH_fam ATP-depende 97.1 0.0056 1.2E-07 73.2 14.5 152 2-175 91-267 (495)
165 COG3267 ExeA Type II secretory 97.1 0.013 2.9E-07 59.7 14.5 171 1-177 53-247 (269)
166 TIGR02880 cbbX_cfxQ probable R 97.1 0.0049 1.1E-07 67.3 12.6 127 2-146 61-209 (284)
167 TIGR02903 spore_lon_C ATP-depe 97.1 0.0056 1.2E-07 74.4 14.3 110 67-178 282-398 (615)
168 KOG0728 26S proteasome regulat 97.1 0.0085 1.8E-07 59.7 12.7 124 2-145 184-331 (404)
169 PRK14950 DNA polymerase III su 97.1 0.008 1.7E-07 73.1 15.4 166 2-174 41-220 (585)
170 KOG2543 Origin recognition com 97.1 0.012 2.6E-07 63.3 14.4 138 2-145 33-193 (438)
171 PF05673 DUF815: Protein of un 97.1 0.018 4E-07 59.1 15.1 91 2-118 55-155 (249)
172 PRK07261 topology modulation p 97.1 0.0021 4.6E-08 64.2 8.5 34 2-35 3-37 (171)
173 KOG0741 AAA+-type ATPase [Post 97.0 0.0079 1.7E-07 67.0 13.2 139 2-165 541-704 (744)
174 KOG2982 Uncharacterized conser 97.0 0.00028 6.2E-09 72.1 1.9 61 469-540 222-287 (418)
175 PRK06305 DNA polymerase III su 97.0 0.0094 2E-07 69.6 14.5 98 77-175 120-223 (451)
176 PRK08118 topology modulation p 97.0 0.0014 3E-08 65.2 6.5 34 2-35 4-38 (167)
177 PRK11331 5-methylcytosine-spec 97.0 0.0015 3.4E-08 73.5 7.4 86 2-90 197-284 (459)
178 PRK05563 DNA polymerase III su 97.0 0.014 3E-07 70.2 15.9 161 2-170 41-215 (559)
179 KOG0991 Replication factor C, 97.0 0.0056 1.2E-07 60.5 10.0 73 2-90 51-125 (333)
180 COG1223 Predicted ATPase (AAA+ 96.9 0.0037 8E-08 62.9 8.6 145 2-168 154-318 (368)
181 PHA02544 44 clamp loader, smal 96.9 0.0042 9.2E-08 70.0 10.5 119 2-143 46-171 (316)
182 PRK06647 DNA polymerase III su 96.9 0.012 2.5E-07 70.5 14.4 163 2-172 41-217 (563)
183 PRK12377 putative replication 96.9 0.0019 4E-08 68.2 6.9 72 2-90 104-175 (248)
184 KOG0736 Peroxisome assembly fa 96.9 0.0067 1.5E-07 70.9 11.4 141 2-166 708-876 (953)
185 KOG0739 AAA+-type ATPase [Post 96.9 0.0061 1.3E-07 62.6 9.8 146 2-168 169-334 (439)
186 COG2255 RuvB Holliday junction 96.9 0.011 2.4E-07 60.9 11.6 62 108-170 156-218 (332)
187 PLN00020 ribulose bisphosphate 96.9 0.017 3.7E-07 62.8 13.7 144 2-170 151-333 (413)
188 PRK14965 DNA polymerase III su 96.9 0.013 2.9E-07 70.8 14.5 152 2-175 41-221 (576)
189 PF01695 IstB_IS21: IstB-like 96.8 0.002 4.3E-08 64.7 6.1 71 2-90 50-120 (178)
190 PF13191 AAA_16: AAA ATPase do 96.8 0.0025 5.4E-08 65.5 7.0 38 1-40 26-63 (185)
191 PF00448 SRP54: SRP54-type pro 96.8 0.0044 9.5E-08 63.2 8.4 86 1-88 3-93 (196)
192 cd01120 RecA-like_NTPases RecA 96.8 0.0054 1.2E-07 61.6 9.2 39 1-41 1-39 (165)
193 KOG0735 AAA+-type ATPase [Post 96.8 0.0052 1.1E-07 70.9 9.3 155 2-175 434-616 (952)
194 COG0466 Lon ATP-dependent Lon 96.7 0.0039 8.4E-08 72.7 8.2 131 1-145 352-508 (782)
195 KOG0989 Replication factor C, 96.7 0.0049 1.1E-07 64.2 8.0 161 2-175 60-231 (346)
196 PRK08769 DNA polymerase III su 96.7 0.028 6.1E-07 61.7 14.3 151 2-174 29-207 (319)
197 PRK06921 hypothetical protein; 96.7 0.0033 7.1E-08 67.7 6.9 67 2-87 120-186 (266)
198 COG5238 RNA1 Ran GTPase-activa 96.7 0.002 4.3E-08 65.2 4.8 66 417-483 86-169 (388)
199 PRK06871 DNA polymerase III su 96.7 0.027 5.8E-07 62.1 14.0 157 2-171 27-199 (325)
200 TIGR01243 CDC48 AAA family ATP 96.7 0.0087 1.9E-07 75.5 11.7 152 2-175 490-664 (733)
201 PRK06090 DNA polymerase III su 96.7 0.056 1.2E-06 59.4 16.2 162 2-194 28-217 (319)
202 PRK08181 transposase; Validate 96.6 0.0043 9.4E-08 66.4 7.2 71 2-90 109-179 (269)
203 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0084 1.8E-07 64.3 9.6 88 1-89 21-126 (235)
204 PRK07399 DNA polymerase III su 96.6 0.052 1.1E-06 60.0 15.4 166 2-174 29-220 (314)
205 TIGR03345 VI_ClpV1 type VI sec 96.6 0.012 2.7E-07 74.3 11.7 153 2-167 211-388 (852)
206 KOG1969 DNA replication checkp 96.5 0.0049 1.1E-07 71.6 7.2 72 1-90 328-399 (877)
207 TIGR02237 recomb_radB DNA repa 96.5 0.0082 1.8E-07 62.9 8.5 42 1-45 14-55 (209)
208 KOG0743 AAA+-type ATPase [Post 96.5 0.038 8.2E-07 61.4 13.2 145 3-179 239-413 (457)
209 PRK04296 thymidine kinase; Pro 96.5 0.0028 6.1E-08 64.7 4.5 110 1-116 4-118 (190)
210 PRK06526 transposase; Provisio 96.5 0.0045 9.8E-08 65.9 6.1 71 2-90 101-171 (254)
211 TIGR02640 gas_vesic_GvpN gas v 96.5 0.037 7.9E-07 60.0 13.2 40 2-46 24-63 (262)
212 PRK14722 flhF flagellar biosyn 96.5 0.011 2.4E-07 66.1 9.2 87 1-89 139-226 (374)
213 KOG0731 AAA+-type ATPase conta 96.5 0.035 7.5E-07 66.6 13.7 149 2-171 347-520 (774)
214 KOG0735 AAA+-type ATPase [Post 96.5 0.022 4.8E-07 66.1 11.6 148 2-171 704-872 (952)
215 TIGR02639 ClpA ATP-dependent C 96.4 0.016 3.4E-07 72.9 11.7 131 2-145 206-358 (731)
216 PF13207 AAA_17: AAA domain; P 96.4 0.0022 4.8E-08 60.3 3.1 24 1-24 1-24 (121)
217 PRK07952 DNA replication prote 96.4 0.0087 1.9E-07 63.0 7.6 73 2-90 102-174 (244)
218 TIGR02012 tigrfam_recA protein 96.4 0.011 2.4E-07 64.6 8.5 83 1-90 57-145 (321)
219 PRK10536 hypothetical protein; 96.4 0.011 2.4E-07 61.5 8.0 35 1-35 76-110 (262)
220 PF08423 Rad51: Rad51; InterP 96.4 0.017 3.7E-07 61.9 9.7 88 2-90 41-145 (256)
221 KOG1514 Origin recognition com 96.3 0.081 1.8E-06 61.9 15.2 172 2-177 425-623 (767)
222 PF07728 AAA_5: AAA domain (dy 96.3 0.0027 5.9E-08 61.4 3.2 76 2-90 2-77 (139)
223 cd01133 F1-ATPase_beta F1 ATP 96.3 0.024 5.2E-07 60.1 10.3 88 2-90 72-175 (274)
224 PRK07993 DNA polymerase III su 96.3 0.066 1.4E-06 59.8 14.3 155 2-171 27-200 (334)
225 PRK06835 DNA replication prote 96.3 0.0063 1.4E-07 67.3 6.2 97 2-114 186-289 (329)
226 PHA00729 NTP-binding motif con 96.3 0.013 2.7E-07 60.1 7.7 23 2-24 20-42 (226)
227 TIGR03499 FlhF flagellar biosy 96.3 0.019 4.2E-07 62.6 9.7 85 1-87 196-281 (282)
228 PRK08058 DNA polymerase III su 96.3 0.055 1.2E-06 60.7 13.5 122 2-144 31-181 (329)
229 CHL00095 clpC Clp protease ATP 96.3 0.021 4.5E-07 72.8 11.3 131 2-145 203-354 (821)
230 PRK09354 recA recombinase A; P 96.2 0.016 3.4E-07 63.9 8.8 83 1-90 62-150 (349)
231 cd00983 recA RecA is a bacter 96.2 0.014 3.1E-07 63.7 8.3 82 1-89 57-144 (325)
232 COG1618 Predicted nucleotide k 96.2 0.0058 1.2E-07 57.2 4.4 26 2-27 8-33 (179)
233 PF10443 RNA12: RNA12 protein; 96.2 0.089 1.9E-06 58.8 14.2 184 1-192 19-297 (431)
234 COG1066 Sms Predicted ATP-depe 96.2 0.019 4E-07 62.7 8.7 84 1-90 95-180 (456)
235 PRK06964 DNA polymerase III su 96.2 0.12 2.5E-06 57.6 15.3 101 64-173 114-223 (342)
236 PRK09183 transposase/IS protei 96.2 0.013 2.8E-07 63.0 7.7 33 2-36 105-137 (259)
237 cd01393 recA_like RecA is a b 96.2 0.025 5.4E-07 60.2 9.9 45 1-45 21-69 (226)
238 PRK04132 replication factor C 96.2 0.085 1.8E-06 65.4 15.3 155 5-175 570-732 (846)
239 KOG2004 Mitochondrial ATP-depe 96.1 0.029 6.3E-07 65.3 10.4 131 1-145 440-596 (906)
240 PRK12727 flagellar biosynthesi 96.1 0.017 3.7E-07 66.6 8.5 86 1-88 352-438 (559)
241 KOG0730 AAA+-type ATPase [Post 96.1 0.05 1.1E-06 63.1 11.9 125 2-146 471-616 (693)
242 COG1373 Predicted ATPase (AAA+ 96.1 0.071 1.5E-06 61.3 13.5 116 1-139 39-161 (398)
243 CHL00206 ycf2 Ycf2; Provisiona 96.1 0.043 9.3E-07 71.8 12.4 24 2-25 1633-1656(2281)
244 KOG2739 Leucine-rich acidic nu 96.1 0.0033 7.1E-08 64.2 2.2 83 374-456 61-153 (260)
245 KOG0727 26S proteasome regulat 96.0 0.069 1.5E-06 53.6 11.1 69 2-90 192-260 (408)
246 PRK10733 hflB ATP-dependent me 96.0 0.037 7.9E-07 68.1 11.5 144 2-167 188-355 (644)
247 TIGR02238 recomb_DMC1 meiotic 96.0 0.024 5.3E-07 62.4 8.9 88 1-89 98-202 (313)
248 TIGR01243 CDC48 AAA family ATP 96.0 0.042 9E-07 69.4 12.0 147 2-170 215-382 (733)
249 COG1102 Cmk Cytidylate kinase 96.0 0.0092 2E-07 55.9 4.4 46 1-59 2-47 (179)
250 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.02 4.3E-07 58.5 7.5 24 1-24 1-24 (183)
251 KOG2739 Leucine-rich acidic nu 95.9 0.004 8.8E-08 63.5 2.1 77 404-483 46-128 (260)
252 cd01121 Sms Sms (bacterial rad 95.9 0.027 5.8E-07 63.7 8.6 84 1-89 84-169 (372)
253 PRK09361 radB DNA repair and r 95.9 0.026 5.6E-07 59.9 8.2 42 1-45 25-66 (225)
254 PRK05541 adenylylsulfate kinas 95.9 0.018 4E-07 58.2 6.7 34 1-36 9-42 (176)
255 PRK12726 flagellar biosynthesi 95.8 0.042 9.2E-07 60.6 9.6 87 1-89 208-296 (407)
256 KOG0744 AAA+-type ATPase [Post 95.8 0.017 3.6E-07 60.5 6.0 26 1-26 179-204 (423)
257 cd03115 SRP The signal recogni 95.8 0.034 7.4E-07 56.1 8.4 87 1-89 2-93 (173)
258 PLN03187 meiotic recombination 95.8 0.047 1E-06 60.6 9.8 55 2-57 129-187 (344)
259 TIGR00763 lon ATP-dependent pr 95.8 0.056 1.2E-06 68.4 11.9 133 1-145 349-505 (775)
260 PRK12723 flagellar biosynthesi 95.8 0.024 5.1E-07 64.1 7.6 88 1-90 176-266 (388)
261 PRK05703 flhF flagellar biosyn 95.7 0.035 7.5E-07 64.2 9.1 85 1-87 223-308 (424)
262 PRK12724 flagellar biosynthesi 95.7 0.032 6.9E-07 62.7 8.4 82 1-86 225-307 (432)
263 PF00006 ATP-synt_ab: ATP synt 95.7 0.042 9.2E-07 56.6 8.7 83 2-88 18-115 (215)
264 PRK11034 clpA ATP-dependent Cl 95.7 0.04 8.7E-07 68.2 9.8 132 2-145 210-362 (758)
265 COG0464 SpoVK ATPases of the A 95.7 0.062 1.3E-06 64.7 11.4 126 2-147 279-425 (494)
266 TIGR00602 rad24 checkpoint pro 95.7 0.022 4.8E-07 68.4 7.4 24 1-24 112-135 (637)
267 KOG2123 Uncharacterized conser 95.7 0.00064 1.4E-08 68.9 -4.6 79 402-482 20-99 (388)
268 COG1419 FlhF Flagellar GTP-bin 95.6 0.059 1.3E-06 59.7 9.7 86 1-88 205-291 (407)
269 cd02025 PanK Pantothenate kina 95.6 0.056 1.2E-06 56.5 9.3 40 1-40 1-40 (220)
270 COG1484 DnaC DNA replication p 95.6 0.045 9.7E-07 58.5 8.7 72 2-90 108-179 (254)
271 cd01124 KaiC KaiC is a circadi 95.6 0.052 1.1E-06 55.8 8.9 38 1-40 1-38 (187)
272 PF00560 LRR_1: Leucine Rich R 95.6 0.0054 1.2E-07 36.8 0.9 22 424-445 1-22 (22)
273 PRK11889 flhF flagellar biosyn 95.6 0.043 9.3E-07 60.7 8.4 87 1-89 243-331 (436)
274 TIGR02639 ClpA ATP-dependent C 95.5 0.075 1.6E-06 66.9 11.8 79 2-90 487-565 (731)
275 PRK08533 flagellar accessory p 95.5 0.061 1.3E-06 56.8 9.3 51 1-56 26-76 (230)
276 cd01394 radB RadB. The archaea 95.5 0.04 8.7E-07 58.1 8.1 39 1-41 21-59 (218)
277 PF07693 KAP_NTPase: KAP famil 95.5 0.19 4.2E-06 57.0 14.2 39 1-39 22-61 (325)
278 COG3598 RepA RecA-family ATPas 95.5 0.041 9E-07 57.7 7.6 87 2-88 92-204 (402)
279 PTZ00035 Rad51 protein; Provis 95.5 0.063 1.4E-06 60.0 9.8 56 1-57 120-179 (337)
280 TIGR02236 recomb_radA DNA repa 95.5 0.065 1.4E-06 60.0 10.0 56 1-57 97-156 (310)
281 TIGR03346 chaperone_ClpB ATP-d 95.5 0.12 2.6E-06 66.2 13.5 131 2-145 197-349 (852)
282 TIGR02239 recomb_RAD51 DNA rep 95.5 0.047 1E-06 60.4 8.7 56 1-57 98-157 (316)
283 PF13306 LRR_5: Leucine rich r 95.5 0.041 8.8E-07 52.4 7.3 113 351-471 10-126 (129)
284 cd02019 NK Nucleoside/nucleoti 95.5 0.014 3.1E-07 47.8 3.4 23 1-23 1-23 (69)
285 PRK10787 DNA-binding ATP-depen 95.5 0.073 1.6E-06 66.6 11.1 133 1-145 351-506 (784)
286 KOG0729 26S proteasome regulat 95.4 0.056 1.2E-06 54.7 8.0 69 2-90 214-282 (435)
287 cd01135 V_A-ATPase_B V/A-type 95.4 0.095 2.1E-06 55.5 10.0 89 2-90 72-178 (276)
288 KOG0738 AAA+-type ATPase [Post 95.4 0.11 2.3E-06 56.3 10.3 23 2-24 248-270 (491)
289 PRK10865 protein disaggregatio 95.4 0.12 2.6E-06 65.8 12.9 131 2-145 202-354 (857)
290 PF13481 AAA_25: AAA domain; P 95.4 0.051 1.1E-06 56.2 8.1 40 1-40 34-81 (193)
291 PRK04301 radA DNA repair and r 95.4 0.077 1.7E-06 59.4 10.0 55 1-56 104-162 (317)
292 PF01583 APS_kinase: Adenylyls 95.4 0.021 4.5E-07 55.0 4.6 35 1-37 4-38 (156)
293 COG0563 Adk Adenylate kinase a 95.4 0.026 5.7E-07 56.3 5.5 23 2-24 3-25 (178)
294 cd01131 PilT Pilus retraction 95.3 0.016 3.5E-07 59.6 4.1 107 1-114 3-109 (198)
295 PRK08939 primosomal protein Dn 95.3 0.066 1.4E-06 58.9 9.0 71 2-90 159-229 (306)
296 KOG2123 Uncharacterized conser 95.3 0.0012 2.5E-08 67.1 -4.2 79 352-434 18-99 (388)
297 PF13238 AAA_18: AAA domain; P 95.3 0.014 3E-07 55.6 3.3 22 2-23 1-22 (129)
298 TIGR03345 VI_ClpV1 type VI sec 95.3 0.055 1.2E-06 68.6 9.3 83 1-90 598-680 (852)
299 PLN03186 DNA repair protein RA 95.3 0.06 1.3E-06 59.9 8.5 56 1-57 125-184 (342)
300 TIGR03346 chaperone_ClpB ATP-d 95.3 0.094 2E-06 67.1 11.5 82 2-90 598-679 (852)
301 PF10236 DAP3: Mitochondrial r 95.2 0.36 7.9E-06 53.4 14.6 47 126-172 258-306 (309)
302 PRK08233 hypothetical protein; 95.2 0.049 1.1E-06 55.6 7.4 24 1-24 5-28 (182)
303 cd00544 CobU Adenosylcobinamid 95.2 0.077 1.7E-06 52.6 8.3 81 1-87 1-82 (169)
304 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.095 2.1E-06 55.9 9.7 45 1-49 23-67 (237)
305 PRK14974 cell division protein 95.2 0.081 1.8E-06 58.6 9.2 88 1-90 142-234 (336)
306 PF13306 LRR_5: Leucine rich r 95.2 0.046 1E-06 52.0 6.5 107 368-480 2-112 (129)
307 KOG0651 26S proteasome regulat 95.2 0.048 1E-06 57.0 6.7 97 2-118 169-285 (388)
308 PRK00771 signal recognition pa 95.2 0.039 8.4E-07 63.5 6.9 84 1-88 97-185 (437)
309 COG2812 DnaX DNA polymerase II 95.1 0.052 1.1E-06 62.9 7.8 158 4-169 43-214 (515)
310 PRK06217 hypothetical protein; 95.1 0.074 1.6E-06 54.1 8.1 33 2-35 4-38 (183)
311 COG0470 HolB ATPase involved i 95.1 0.1 2.2E-06 59.3 10.2 116 2-133 27-169 (325)
312 PRK14721 flhF flagellar biosyn 95.1 0.11 2.4E-06 59.3 10.0 85 1-87 193-278 (420)
313 PRK04328 hypothetical protein; 95.1 0.084 1.8E-06 56.6 8.8 38 1-40 25-62 (249)
314 PRK06995 flhF flagellar biosyn 95.1 0.089 1.9E-06 61.0 9.3 86 1-88 258-344 (484)
315 TIGR00064 ftsY signal recognit 95.0 0.093 2E-06 56.8 9.0 87 1-89 74-165 (272)
316 PF00154 RecA: recA bacterial 95.0 0.11 2.3E-06 56.8 9.3 83 1-90 55-143 (322)
317 KOG3347 Predicted nucleotide k 95.0 0.045 9.8E-07 50.4 5.3 32 2-40 10-41 (176)
318 KOG0734 AAA+-type ATPase conta 95.0 0.075 1.6E-06 59.7 8.0 124 2-145 340-484 (752)
319 PF00485 PRK: Phosphoribulokin 95.0 0.019 4E-07 59.2 3.4 25 1-25 1-25 (194)
320 COG3640 CooC CO dehydrogenase 95.0 0.039 8.4E-07 55.5 5.3 51 1-59 2-52 (255)
321 TIGR03878 thermo_KaiC_2 KaiC d 95.0 0.099 2.2E-06 56.4 9.0 39 1-41 38-76 (259)
322 COG1428 Deoxynucleoside kinase 94.9 0.039 8.4E-07 54.9 5.1 24 1-24 6-29 (216)
323 cd03238 ABC_UvrA The excision 94.9 0.081 1.7E-06 52.9 7.5 106 1-117 23-152 (176)
324 PRK10865 protein disaggregatio 94.9 0.27 5.8E-06 62.8 13.9 82 2-90 601-682 (857)
325 PRK11823 DNA repair protein Ra 94.9 0.058 1.3E-06 63.0 7.4 83 1-88 82-166 (446)
326 PRK07132 DNA polymerase III su 94.9 0.4 8.7E-06 52.4 13.3 150 2-174 21-184 (299)
327 TIGR01425 SRP54_euk signal rec 94.9 0.094 2E-06 59.8 8.7 36 1-38 102-137 (429)
328 PRK11034 clpA ATP-dependent Cl 94.8 0.1 2.2E-06 64.8 9.6 79 2-90 491-569 (758)
329 KOG1532 GTPase XAB1, interacts 94.8 0.13 2.9E-06 52.6 8.6 59 2-60 22-89 (366)
330 TIGR00416 sms DNA repair prote 94.8 0.08 1.7E-06 61.9 8.3 83 1-88 96-180 (454)
331 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.4E-07 35.5 0.6 21 379-399 1-21 (22)
332 PTZ00088 adenylate kinase 1; P 94.8 0.087 1.9E-06 55.2 7.6 23 2-24 9-31 (229)
333 PRK14723 flhF flagellar biosyn 94.7 0.11 2.4E-06 63.4 9.3 86 1-88 187-273 (767)
334 PRK12597 F0F1 ATP synthase sub 94.7 0.14 3E-06 59.0 9.6 88 2-90 146-249 (461)
335 COG2884 FtsE Predicted ATPase 94.7 0.086 1.9E-06 51.2 6.5 52 66-118 144-201 (223)
336 PRK06067 flagellar accessory p 94.6 0.15 3.2E-06 54.5 9.3 83 1-88 27-130 (234)
337 PF00910 RNA_helicase: RNA hel 94.6 0.026 5.6E-07 51.3 2.8 24 2-25 1-24 (107)
338 PTZ00301 uridine kinase; Provi 94.6 0.025 5.4E-07 58.3 3.1 24 1-24 5-28 (210)
339 PF13671 AAA_33: AAA domain; P 94.6 0.025 5.4E-07 55.0 3.0 24 1-24 1-24 (143)
340 PRK10867 signal recognition pa 94.6 0.14 3E-06 58.9 9.3 56 1-57 102-158 (433)
341 cd01125 repA Hexameric Replica 94.5 0.15 3.2E-06 54.6 9.0 54 1-54 3-67 (239)
342 COG5238 RNA1 Ran GTPase-activa 94.5 0.024 5.2E-07 57.8 2.5 155 329-484 28-227 (388)
343 COG4088 Predicted nucleotide k 94.5 0.02 4.2E-07 55.9 1.8 26 1-26 3-28 (261)
344 COG0468 RecA RecA/RadA recombi 94.5 0.21 4.5E-06 53.4 9.7 86 2-90 63-153 (279)
345 COG4608 AppF ABC-type oligopep 94.4 0.12 2.7E-06 53.8 7.6 114 1-118 41-174 (268)
346 PF07726 AAA_3: ATPase family 94.4 0.029 6.2E-07 51.2 2.6 29 2-32 2-30 (131)
347 TIGR02655 circ_KaiC circadian 94.4 0.15 3.3E-06 60.7 9.5 83 1-88 265-363 (484)
348 KOG0652 26S proteasome regulat 94.4 0.41 8.9E-06 48.5 10.8 158 2-180 208-392 (424)
349 cd02027 APSK Adenosine 5'-phos 94.3 0.14 3E-06 50.0 7.4 24 1-24 1-24 (149)
350 PRK08972 fliI flagellum-specif 94.3 0.15 3.2E-06 58.0 8.5 85 2-90 165-264 (444)
351 PRK03839 putative kinase; Prov 94.3 0.041 8.9E-07 55.9 3.9 24 1-24 2-25 (180)
352 PRK00625 shikimate kinase; Pro 94.3 0.045 9.8E-07 54.5 4.0 23 2-24 3-25 (173)
353 cd02029 PRK_like Phosphoribulo 94.3 0.19 4.1E-06 52.8 8.5 25 1-25 1-25 (277)
354 PRK14529 adenylate kinase; Pro 94.3 0.15 3.3E-06 52.8 7.9 84 2-90 3-88 (223)
355 TIGR03305 alt_F1F0_F1_bet alte 94.2 0.22 4.7E-06 57.1 9.8 88 2-90 141-244 (449)
356 PRK08699 DNA polymerase III su 94.2 0.26 5.7E-06 54.8 10.2 147 2-171 24-202 (325)
357 PRK14532 adenylate kinase; Pro 94.2 0.15 3.3E-06 52.2 7.9 23 2-24 3-25 (188)
358 PF06745 KaiC: KaiC; InterPro 94.2 0.089 1.9E-06 55.9 6.3 40 1-41 21-60 (226)
359 KOG0726 26S proteasome regulat 94.2 0.38 8.2E-06 49.8 10.2 69 2-90 222-290 (440)
360 PRK05973 replicative DNA helic 94.2 0.22 4.8E-06 52.0 8.9 38 1-40 66-103 (237)
361 PF03308 ArgK: ArgK protein; 94.1 0.052 1.1E-06 56.2 4.1 42 1-42 31-72 (266)
362 PRK08927 fliI flagellum-specif 94.1 0.26 5.6E-06 56.4 10.0 85 2-90 161-260 (442)
363 PRK09280 F0F1 ATP synthase sub 94.1 0.28 6E-06 56.4 10.2 88 2-90 147-250 (463)
364 PF08433 KTI12: Chromatin asso 94.1 0.13 2.8E-06 55.3 7.3 34 1-36 3-36 (270)
365 PRK06762 hypothetical protein; 94.1 0.038 8.1E-07 55.4 3.1 23 1-23 4-26 (166)
366 PF12775 AAA_7: P-loop contain 94.1 0.028 6.2E-07 60.7 2.3 76 2-89 36-111 (272)
367 cd02024 NRK1 Nicotinamide ribo 94.1 0.042 9.1E-07 55.2 3.3 23 1-23 1-23 (187)
368 PRK05439 pantothenate kinase; 94.1 0.15 3.3E-06 55.6 7.8 24 1-24 88-111 (311)
369 PRK09519 recA DNA recombinatio 94.1 0.17 3.6E-06 62.1 8.9 82 1-89 62-149 (790)
370 PRK00889 adenylylsulfate kinas 94.0 0.14 3E-06 51.7 7.1 34 1-36 6-39 (175)
371 TIGR03574 selen_PSTK L-seryl-t 94.0 0.12 2.6E-06 55.8 7.0 25 1-25 1-25 (249)
372 COG0467 RAD55 RecA-superfamily 94.0 0.31 6.7E-06 53.0 10.2 38 1-40 25-62 (260)
373 TIGR00959 ffh signal recogniti 94.0 0.22 4.7E-06 57.3 9.3 87 1-88 101-192 (428)
374 PLN02200 adenylate kinase fami 94.0 0.13 2.8E-06 54.4 6.9 24 1-24 45-68 (234)
375 PRK00279 adk adenylate kinase; 94.0 0.21 4.5E-06 52.5 8.5 23 2-24 3-25 (215)
376 PRK08149 ATP synthase SpaL; Va 94.0 0.21 4.5E-06 57.1 8.9 85 2-90 154-253 (428)
377 COG1703 ArgK Putative periplas 94.0 0.058 1.3E-06 56.5 4.1 42 1-42 53-94 (323)
378 TIGR00554 panK_bact pantothena 93.9 0.14 3.1E-06 55.4 7.3 24 1-24 64-87 (290)
379 COG0237 CoaE Dephospho-CoA kin 93.9 0.13 2.7E-06 52.4 6.4 49 1-59 4-59 (201)
380 COG0572 Udk Uridine kinase [Nu 93.9 0.043 9.3E-07 55.5 2.9 26 1-26 10-35 (218)
381 PRK13768 GTPase; Provisional 93.9 0.17 3.8E-06 54.3 7.8 37 1-39 4-40 (253)
382 PRK12678 transcription termina 93.9 0.19 4.2E-06 58.2 8.3 88 2-90 419-515 (672)
383 COG4619 ABC-type uncharacteriz 93.9 0.24 5.3E-06 46.9 7.5 23 2-24 32-54 (223)
384 PRK05480 uridine/cytidine kina 93.9 0.042 9.1E-07 57.5 3.0 23 1-23 8-30 (209)
385 PF13177 DNA_pol3_delta2: DNA 93.8 0.37 8E-06 47.6 9.5 114 2-132 22-161 (162)
386 PF07724 AAA_2: AAA domain (Cd 93.8 0.04 8.7E-07 54.8 2.6 40 2-42 6-45 (171)
387 PRK06696 uridine kinase; Valid 93.8 0.044 9.5E-07 57.8 3.1 25 1-25 24-48 (223)
388 PRK14531 adenylate kinase; Pro 93.8 0.19 4E-06 51.2 7.5 23 2-24 5-27 (183)
389 TIGR01039 atpD ATP synthase, F 93.8 0.37 8.1E-06 55.2 10.4 88 2-90 146-249 (461)
390 TIGR02858 spore_III_AA stage I 93.8 0.13 2.8E-06 55.3 6.6 110 2-116 114-231 (270)
391 PRK06547 hypothetical protein; 93.8 0.046 9.9E-07 54.5 2.9 24 1-24 17-40 (172)
392 cd03216 ABC_Carb_Monos_I This 93.8 0.07 1.5E-06 53.0 4.3 109 1-116 28-144 (163)
393 TIGR00235 udk uridine kinase. 93.8 0.045 9.8E-07 57.0 3.1 24 1-24 8-31 (207)
394 TIGR03575 selen_PSTK_euk L-ser 93.8 0.16 3.5E-06 56.2 7.3 37 1-38 1-37 (340)
395 cd02028 UMPK_like Uridine mono 93.7 0.075 1.6E-06 53.6 4.5 24 1-24 1-24 (179)
396 cd03223 ABCD_peroxisomal_ALDP 93.7 0.18 3.8E-06 50.4 7.0 111 1-116 29-150 (166)
397 cd02020 CMPK Cytidine monophos 93.7 0.056 1.2E-06 52.8 3.4 24 1-24 1-24 (147)
398 cd02021 GntK Gluconate kinase 93.7 0.054 1.2E-06 53.1 3.3 23 1-23 1-23 (150)
399 PF03205 MobB: Molybdopterin g 93.7 0.092 2E-06 50.2 4.7 38 1-39 2-39 (140)
400 PRK04040 adenylate kinase; Pro 93.7 0.05 1.1E-06 55.2 3.0 24 1-24 4-27 (188)
401 KOG2859 DNA repair protein, me 93.7 0.35 7.5E-06 47.7 8.4 55 1-55 40-98 (293)
402 COG1936 Predicted nucleotide k 93.6 0.05 1.1E-06 52.1 2.7 20 1-20 2-21 (180)
403 TIGR01041 ATP_syn_B_arch ATP s 93.6 0.34 7.3E-06 56.0 9.9 89 2-90 144-250 (458)
404 TIGR01351 adk adenylate kinase 93.6 0.16 3.5E-06 53.0 6.8 23 2-24 2-24 (210)
405 PRK06936 type III secretion sy 93.6 0.27 5.8E-06 56.2 8.8 85 2-90 165-264 (439)
406 CHL00095 clpC Clp protease ATP 93.6 0.11 2.4E-06 66.2 6.6 82 2-90 542-623 (821)
407 cd02023 UMPK Uridine monophosp 93.5 0.056 1.2E-06 56.0 3.2 23 1-23 1-23 (198)
408 PRK09270 nucleoside triphospha 93.5 0.21 4.6E-06 52.9 7.6 26 1-26 35-60 (229)
409 TIGR03881 KaiC_arch_4 KaiC dom 93.5 0.48 1E-05 50.4 10.4 38 1-40 22-59 (229)
410 COG5635 Predicted NTPase (NACH 93.5 0.11 2.3E-06 66.5 6.2 188 2-194 225-447 (824)
411 PF02562 PhoH: PhoH-like prote 93.5 0.065 1.4E-06 54.4 3.4 110 1-116 21-158 (205)
412 PRK15453 phosphoribulokinase; 93.5 0.32 6.9E-06 51.6 8.5 24 1-24 7-30 (290)
413 cd03214 ABC_Iron-Siderophores_ 93.3 0.19 4.2E-06 51.0 6.7 113 1-117 27-161 (180)
414 COG4240 Predicted kinase [Gene 93.3 0.26 5.6E-06 49.2 7.0 77 1-78 52-133 (300)
415 KOG0740 AAA+-type ATPase [Post 93.3 0.53 1.2E-05 53.1 10.4 68 3-90 190-257 (428)
416 PF03266 NTPase_1: NTPase; In 93.3 0.071 1.5E-06 52.8 3.4 24 2-25 2-25 (168)
417 COG0529 CysC Adenylylsulfate k 93.3 0.072 1.6E-06 51.0 3.1 26 1-26 25-50 (197)
418 PRK07667 uridine kinase; Provi 93.3 0.081 1.8E-06 54.3 3.9 25 1-25 19-43 (193)
419 cd01122 GP4d_helicase GP4d_hel 93.2 0.48 1E-05 52.0 10.2 49 1-52 32-80 (271)
420 PRK06002 fliI flagellum-specif 93.2 0.28 6E-06 56.2 8.3 87 1-90 167-266 (450)
421 PF13479 AAA_24: AAA domain 93.2 0.21 4.5E-06 52.2 7.0 73 2-90 6-80 (213)
422 PLN02674 adenylate kinase 93.2 0.21 4.7E-06 52.4 6.9 23 2-24 34-56 (244)
423 PRK05922 type III secretion sy 93.2 0.38 8.2E-06 55.0 9.3 85 2-90 160-259 (434)
424 cd03246 ABCC_Protease_Secretio 93.2 0.16 3.4E-06 51.2 5.8 24 1-24 30-53 (173)
425 PRK01184 hypothetical protein; 93.2 0.33 7.2E-06 49.5 8.3 21 1-22 3-23 (184)
426 PRK14527 adenylate kinase; Pro 93.2 0.15 3.3E-06 52.3 5.7 24 1-24 8-31 (191)
427 PRK05800 cobU adenosylcobinami 93.2 0.19 4E-06 50.0 6.1 48 1-54 3-50 (170)
428 cd02034 CooC The accessory pro 93.2 0.36 7.9E-06 44.3 7.5 36 2-39 2-37 (116)
429 cd00046 DEXDc DEAD-like helica 93.1 0.27 5.8E-06 47.5 7.3 35 2-36 3-37 (144)
430 PRK10416 signal recognition pa 93.1 0.29 6.4E-06 54.2 8.1 36 1-38 116-151 (318)
431 KOG0737 AAA+-type ATPase [Post 93.1 0.41 8.8E-06 52.0 8.7 23 2-24 130-152 (386)
432 COG0465 HflB ATP-dependent Zn 93.1 0.39 8.5E-06 56.7 9.4 146 2-169 186-355 (596)
433 TIGR01040 V-ATPase_V1_B V-type 93.1 0.5 1.1E-05 54.0 9.9 89 2-90 144-259 (466)
434 PRK13947 shikimate kinase; Pro 93.1 0.076 1.6E-06 53.5 3.3 23 2-24 4-26 (171)
435 TIGR00176 mobB molybdopterin-g 93.1 0.11 2.3E-06 50.9 4.1 26 1-26 1-26 (155)
436 cd01132 F1_ATPase_alpha F1 ATP 93.0 0.44 9.4E-06 50.7 8.8 91 2-96 72-180 (274)
437 cd01428 ADK Adenylate kinase ( 93.0 0.29 6.3E-06 50.5 7.7 24 1-24 1-24 (194)
438 PRK13949 shikimate kinase; Pro 93.0 0.094 2E-06 52.3 3.8 23 2-24 4-26 (169)
439 KOG3864 Uncharacterized conser 93.0 0.025 5.4E-07 55.4 -0.3 35 1008-1043 151-185 (221)
440 cd00227 CPT Chloramphenicol (C 93.0 0.073 1.6E-06 53.7 3.0 24 1-24 4-27 (175)
441 cd03283 ABC_MutS-like MutS-lik 93.0 0.23 5E-06 51.0 6.7 23 1-23 27-49 (199)
442 cd00071 GMPK Guanosine monopho 93.0 0.08 1.7E-06 50.6 3.0 24 1-24 1-24 (137)
443 PRK04196 V-type ATP synthase s 92.9 0.43 9.4E-06 55.3 9.4 89 2-90 146-252 (460)
444 PF13245 AAA_19: Part of AAA d 92.9 0.1 2.2E-06 43.5 3.3 35 2-36 13-49 (76)
445 KOG2228 Origin recognition com 92.9 0.71 1.5E-05 49.3 9.9 142 2-145 52-219 (408)
446 cd01134 V_A-ATPase_A V/A-type 92.9 0.64 1.4E-05 50.9 10.0 45 2-50 160-205 (369)
447 PRK00131 aroK shikimate kinase 92.9 0.079 1.7E-06 53.7 3.2 24 1-24 6-29 (175)
448 CHL00060 atpB ATP synthase CF1 92.9 0.34 7.5E-06 55.9 8.4 88 2-90 164-274 (494)
449 COG0283 Cmk Cytidylate kinase 92.9 0.091 2E-06 52.5 3.4 24 1-24 6-29 (222)
450 PRK14526 adenylate kinase; Pro 92.9 0.27 5.8E-06 50.9 7.0 23 2-24 3-25 (211)
451 TIGR01360 aden_kin_iso1 adenyl 92.9 0.078 1.7E-06 54.5 3.1 23 1-23 5-27 (188)
452 PLN02459 probable adenylate ki 92.8 0.39 8.5E-06 50.7 8.0 23 2-24 32-54 (261)
453 PRK10751 molybdopterin-guanine 92.7 0.12 2.5E-06 51.0 3.8 26 1-26 8-33 (173)
454 TIGR02322 phosphon_PhnN phosph 92.7 0.081 1.8E-06 53.8 2.9 24 1-24 3-26 (179)
455 cd00267 ABC_ATPase ABC (ATP-bi 92.7 0.14 2.9E-06 50.7 4.5 112 1-118 27-144 (157)
456 PRK06731 flhF flagellar biosyn 92.7 0.35 7.7E-06 51.8 7.8 88 1-90 77-166 (270)
457 KOG2035 Replication factor C, 92.7 0.92 2E-05 47.0 10.1 181 2-196 37-260 (351)
458 PF00406 ADK: Adenylate kinase 92.7 0.15 3.3E-06 50.0 4.7 79 4-90 1-85 (151)
459 PTZ00185 ATPase alpha subunit; 92.7 0.75 1.6E-05 52.9 10.5 88 2-90 192-301 (574)
460 COG0003 ArsA Predicted ATPase 92.6 0.16 3.6E-06 55.6 5.3 47 1-49 4-50 (322)
461 PRK09435 membrane ATPase/prote 92.6 0.19 4.1E-06 55.6 5.7 26 1-26 58-83 (332)
462 PF13504 LRR_7: Leucine rich r 92.6 0.08 1.7E-06 29.3 1.5 16 424-439 2-17 (17)
463 cd03230 ABC_DR_subfamily_A Thi 92.5 0.17 3.7E-06 50.9 5.0 111 1-118 28-159 (173)
464 COG0194 Gmk Guanylate kinase [ 92.5 0.092 2E-06 51.2 2.8 23 1-23 6-28 (191)
465 KOG0736 Peroxisome assembly fa 92.5 0.78 1.7E-05 54.6 10.6 147 1-169 433-598 (953)
466 TIGR01420 pilT_fam pilus retra 92.5 0.17 3.7E-06 57.2 5.4 89 1-95 124-212 (343)
467 cd01136 ATPase_flagellum-secre 92.5 0.58 1.3E-05 51.6 9.2 85 2-90 72-171 (326)
468 cd03247 ABCC_cytochrome_bd The 92.5 0.29 6.4E-06 49.5 6.6 24 1-24 30-53 (178)
469 cd00464 SK Shikimate kinase (S 92.4 0.11 2.3E-06 51.3 3.3 23 2-24 2-24 (154)
470 PRK14733 coaE dephospho-CoA ki 92.4 0.26 5.7E-06 50.3 6.1 51 1-58 8-62 (204)
471 PF09848 DUF2075: Uncharacteri 92.4 0.38 8.3E-06 54.8 8.2 40 1-40 3-42 (352)
472 cd00561 CobA_CobO_BtuR ATP:cor 92.4 1 2.2E-05 43.8 9.7 108 1-115 4-139 (159)
473 TIGR00150 HI0065_YjeE ATPase, 92.4 0.11 2.3E-06 48.7 2.9 25 1-25 24-48 (133)
474 TIGR01313 therm_gnt_kin carboh 92.4 0.088 1.9E-06 52.5 2.7 22 2-23 1-22 (163)
475 PRK12339 2-phosphoglycerate ki 92.3 0.098 2.1E-06 53.4 2.9 24 1-24 5-28 (197)
476 TIGR03496 FliI_clade1 flagella 92.3 0.37 8E-06 55.2 7.7 85 2-90 140-239 (411)
477 PRK14530 adenylate kinase; Pro 92.2 0.13 2.8E-06 54.0 3.8 23 2-24 6-28 (215)
478 PRK09099 type III secretion sy 92.2 0.45 9.8E-06 54.7 8.3 86 2-90 166-265 (441)
479 cd01983 Fer4_NifH The Fer4_Nif 92.2 0.15 3.3E-06 45.5 3.7 25 1-25 1-25 (99)
480 PF03969 AFG1_ATPase: AFG1-lik 92.2 0.14 3E-06 57.7 4.0 73 2-88 65-137 (362)
481 TIGR02655 circ_KaiC circadian 92.2 0.57 1.2E-05 55.9 9.5 37 1-39 23-60 (484)
482 cd03114 ArgK-like The function 92.1 0.25 5.4E-06 47.9 5.3 36 1-38 1-36 (148)
483 COG2019 AdkA Archaeal adenylat 92.1 0.11 2.5E-06 49.1 2.7 23 1-23 6-28 (189)
484 TIGR00750 lao LAO/AO transport 92.1 0.26 5.5E-06 54.7 6.1 36 1-38 36-71 (300)
485 PF08477 Miro: Miro-like prote 92.1 0.13 2.7E-06 48.1 3.2 24 2-25 2-25 (119)
486 PRK05917 DNA polymerase III su 92.0 1.6 3.5E-05 47.1 11.7 23 2-24 22-44 (290)
487 PRK05688 fliI flagellum-specif 92.0 0.63 1.4E-05 53.5 9.1 85 2-90 171-270 (451)
488 COG0542 clpA ATP-binding subun 92.0 0.19 4.2E-06 61.0 5.3 82 2-90 524-605 (786)
489 TIGR03880 KaiC_arch_3 KaiC dom 92.0 0.61 1.3E-05 49.4 8.6 38 1-40 18-55 (224)
490 PRK03846 adenylylsulfate kinas 92.0 0.17 3.6E-06 52.3 4.2 24 1-24 26-49 (198)
491 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.0 0.22 4.8E-06 48.2 4.8 100 1-117 28-130 (144)
492 COG0396 sufC Cysteine desulfur 91.9 0.4 8.7E-06 48.5 6.4 49 69-118 154-208 (251)
493 TIGR03324 alt_F1F0_F1_al alter 91.9 0.75 1.6E-05 53.4 9.6 85 2-90 165-266 (497)
494 COG2607 Predicted ATPase (AAA+ 91.8 0.93 2E-05 46.1 8.8 63 2-90 88-151 (287)
495 PRK05057 aroK shikimate kinase 91.8 0.14 2.9E-06 51.4 3.2 23 2-24 7-29 (172)
496 PRK07594 type III secretion sy 91.8 0.46 1E-05 54.4 7.7 86 1-90 157-257 (433)
497 COG3854 SpoIIIAA ncharacterize 91.8 0.35 7.5E-06 48.5 5.8 110 2-116 140-255 (308)
498 PRK10463 hydrogenase nickel in 91.8 0.82 1.8E-05 49.2 9.1 83 1-89 106-195 (290)
499 COG1124 DppF ABC-type dipeptid 91.8 0.14 3.1E-06 52.1 3.2 24 1-24 35-58 (252)
500 TIGR03498 FliI_clade3 flagella 91.8 0.53 1.1E-05 53.9 8.1 86 2-90 143-242 (418)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-65 Score=616.55 Aligned_cols=475 Identities=33% Similarity=0.548 Sum_probs=385.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh-cccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccCh---hHHHHHHHHHHhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR-NDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESE---SGRARKLCERLRK 76 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~~~~l~~ 76 (1314)
+|+|+||||+||||||++++++.. ++++||.++||.+|+.++...++.+|++.++....+... ......+.+.|.
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~- 259 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE- 259 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-
Confidence 589999999999999999999998 899999999999999999999999999999885444333 344556666665
Q ss_pred CCeEEEEEeCCCCcccccccCCCCCC--CCceEEEEeccccccccccCCCccEEecCCCHHHHHHHHHHHhCCC--CCCc
Q 042307 77 EKKILVILDNIWANLDLENVGIPFGD--RGCGVLMTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGDK--IENN 152 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~~~~~~~~~~~~--~~~~ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~--~~~~ 152 (1314)
++|++||+||||+.++|+.++.|++. .||||++|||++.|+..+++....++++.|+.+|||++|.+.++.. ...+
T Consensus 260 ~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~ 339 (889)
T KOG4658|consen 260 GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHP 339 (889)
T ss_pred cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccc
Confidence 99999999999999999999988765 5899999999999999668888999999999999999999999743 2334
Q ss_pred cHHHHHHHHHHHhCCcHHHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCCCCCchhhhhheeecccccCchhhHHHHHh
Q 042307 153 DLKAVAVDIAKACGGLPIAIVTIARALRNK-NTFEWKNALRELTRPSSSSFSGVPAEAYKSIELSYNHLEGEELKSTFLL 231 (1314)
Q Consensus 153 ~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~f~~ 231 (1314)
..+++|+++|++|+|+|+|+.++|+.|+.+ +..+|+++.+.+......+.++..+.++.++.+||+.|+++ +|.||+|
T Consensus 340 ~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLy 418 (889)
T KOG4658|consen 340 DIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLY 418 (889)
T ss_pred cHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHh
Confidence 489999999999999999999999999999 88899999999988655666777888999999999999965 9999999
Q ss_pred hccccccCCcCHH--HHHHhhcccccccCcCCHHHHHHHHHHHHHHHhhccccccCC---CCceeeechhHHHHHHHHhc
Q 042307 232 CCLMDFIENPSVL--YLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLDGP---ESEYFSVHDVVRDVAISIAS 306 (1314)
Q Consensus 232 ~~~~~fp~~~~i~--~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~---~~~~~~mH~lv~~~~~~~~~ 306 (1314)
||+ ||+|+.|. .++.+|+|+|++++....+.+++.+.+++.+|+++++++... ...++.|||+||++|..+++
T Consensus 419 cal--FPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 419 CAL--FPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred hcc--CCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 999 89999986 999999999999887777788888999999999999998875 44789999999999999999
Q ss_pred -----ccccccccccCCCCCccccCcccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCC-CcccCchhhhCCCcc
Q 042307 307 -----RDQHSIAVNNIEAPPRELLDRDTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREG-FIKIPDNFFTRLTEL 380 (1314)
Q Consensus 307 -----~e~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~-~~~~~~~~f~~l~~L 380 (1314)
+|..+.... ......+....+..+|++++.+|.+..++....+++|++|.+..|.. ...++..+|..++.|
T Consensus 497 ~~~~~~e~~iv~~~---~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~L 573 (889)
T KOG4658|consen 497 DFGKQEENQIVSDG---VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLL 573 (889)
T ss_pred cccccccceEEECC---cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcce
Confidence 666444321 22223345556788999999999999999999999999999999874 567888889999999
Q ss_pred cEEEecCCc-CCCCCcccccCccCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCC
Q 042307 381 RVLDFTDMH-LLSLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQL 459 (1314)
Q Consensus 381 ~~L~Ls~n~-~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 459 (1314)
|+|||++|. +..+|+++++ |.+||||+++++.+..+|.++++|+.|.||++..+..+
T Consensus 574 rVLDLs~~~~l~~LP~~I~~----------------------Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 574 RVLDLSGNSSLSKLPSSIGE----------------------LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred EEEECCCCCccCcCChHHhh----------------------hhhhhcccccCCCccccchHHHHHHhhheecccccccc
Confidence 999999864 4567776555 45555556666666667777777777777777766555
Q ss_pred CccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeE
Q 042307 460 KAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQ 515 (1314)
Q Consensus 460 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 515 (1314)
..+| ..+..|.+||+|.+...... .......++.++.+|+.+.+.
T Consensus 632 ~~~~-~i~~~L~~Lr~L~l~~s~~~----------~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 632 ESIP-GILLELQSLRVLRLPRSALS----------NDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccc-chhhhcccccEEEeeccccc----------cchhhHHhhhcccchhhheee
Confidence 5553 32555777777766543311 113344455556666655553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4e-56 Score=576.27 Aligned_cols=658 Identities=20% Similarity=0.292 Sum_probs=434.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEe---ccCc-----------C-HHHHHHHHHHHhCCCccccChhH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADV---SQTP-----------D-IKKIQGQIADKLGLKFYEESESG 65 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~~~~~~ 65 (1314)
||+|+||||+||||||+.+|++.. ..|++.+|++. +... . ...++++++..+...... ...
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~--~~~ 284 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI--KIY 284 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc--ccC
Confidence 689999999999999999999876 45888888753 1110 0 122344444443222110 011
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCcccccccCCC--CCCCCceEEEEeccccccccccCCCccEEecCCCHHHHHHHHHH
Q 042307 66 RARKLCERLRKEKKILVILDNIWANLDLENVGIP--FGDRGCGVLMTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKK 143 (1314)
Q Consensus 66 ~~~~~~~~l~~~~~~LlvlD~v~~~~~~~~~~~~--~~~~~~~ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~ 143 (1314)
....+.+++. ++++||||||||+.++|+.+... +.++|++||||||++.++. ..+..+.++++.++.+||+++|.+
T Consensus 285 ~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~ 362 (1153)
T PLN03210 285 HLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCR 362 (1153)
T ss_pred CHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHH
Confidence 1234455554 89999999999999888887543 2357999999999999886 456678999999999999999999
Q ss_pred HhCCCC-CCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCCchhhhhheeecccccCc
Q 042307 144 LVGDKI-ENNDLKAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALRELTRPSSSSFSGVPAEAYKSIELSYNHLEG 222 (1314)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~ 222 (1314)
+|+... ...+..+++++|+++|+|+|||++++|+++++++..+|+++++++.. ..+..+..+|++||+.|++
T Consensus 363 ~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~-------~~~~~I~~~L~~SYd~L~~ 435 (1153)
T PLN03210 363 SAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRN-------GLDGKIEKTLRVSYDGLNN 435 (1153)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHh-------CccHHHHHHHHHhhhccCc
Confidence 996433 34567889999999999999999999999999999999999999865 2345789999999999987
Q ss_pred hhhHHHHHhhccccccCCcCHHHHHHhhcccccccCcCCHHHHHHHHHHHHHHHhhccccccCCCCceeeechhHHHHHH
Q 042307 223 EELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLDGPESEYFSVHDVVRDVAI 302 (1314)
Q Consensus 223 ~~~~~~f~~~~~~~fp~~~~i~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~mH~lv~~~~~ 302 (1314)
+..|.+|+++|+ |+.+..++.+. .|.+.+.... ...++.|+++||++.. .+.|.|||++|++|+
T Consensus 436 ~~~k~~Fl~ia~--ff~~~~~~~v~-~~l~~~~~~~-----------~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r 499 (1153)
T PLN03210 436 KKDKAIFRHIAC--LFNGEKVNDIK-LLLANSDLDV-----------NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGK 499 (1153)
T ss_pred cchhhhhheehh--hcCCCCHHHHH-HHHHhcCCCc-----------hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHH
Confidence 546999999999 56777776543 3443332211 1237889999999765 357999999999999
Q ss_pred HHhcccccccccccCCCCCcccc---------CcccCCCccEEEcccCCCccc--CCC-c-CCCCccEEEeCCCC-----
Q 042307 303 SIASRDQHSIAVNNIEAPPRELL---------DRDTLKNCTAISLHNCKIGEL--VDG-L-ECPRLKFFHISPRE----- 364 (1314)
Q Consensus 303 ~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~~l~~l~l~~~~l~~l--~~~-~-~~~~L~~L~l~~~~----- 364 (1314)
++++++.. .++....-|. ......+++.+.+.-..+.++ ... + .+++|+.|.+..+.
T Consensus 500 ~i~~~~~~-----~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~ 574 (1153)
T PLN03210 500 EIVRAQSN-----EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKK 574 (1153)
T ss_pred HHHHhhcC-----CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccc
Confidence 99987631 1111111111 122234556666554444322 111 1 56666666665432
Q ss_pred -CCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc-cccCCCCCCCEEEccCc-cCcccchh
Q 042307 365 -GFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV-AVIGELKQLEILSFQGS-NIEQLPRE 441 (1314)
Q Consensus 365 -~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~~~L~~L~~L~L~~~-~i~~lp~~ 441 (1314)
....+|.++..-..+||+|++.++.+..+|..| ...+|+.|++++|.+..+ ..+..+++|++|+|+++ .+..+|.
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~- 652 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD- 652 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-
Confidence 112344443222345666666666666666665 356666666666666554 45566666666666665 3455553
Q ss_pred hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCC
Q 042307 442 IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKV 521 (1314)
Q Consensus 442 i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 521 (1314)
++.+++|++|++++|..+..+|.. ++++++|++|++++|... ...+..+ ++++|+.|+++++.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L------------~~Lp~~i-~l~sL~~L~Lsgc~--- 715 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL------------EILPTGI-NLKSLYRLNLSGCS--- 715 (1153)
T ss_pred cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc------------CccCCcC-CCCCCCEEeCCCCC---
Confidence 566666666666666666666655 666666666666665321 1111111 34555555554432
Q ss_pred CCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchhhccccccCCCCCC
Q 042307 522 LPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSL 601 (1314)
Q Consensus 522 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 601 (1314)
.....+ ....+|
T Consensus 716 ---------------------------------------------------------------~L~~~p-----~~~~nL 727 (1153)
T PLN03210 716 ---------------------------------------------------------------RLKSFP-----DISTNI 727 (1153)
T ss_pred ---------------------------------------------------------------Cccccc-----cccCCc
Confidence 111111 012334
Q ss_pred ceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhc----CCCccccccccceeEEecCCCcccccchhhh
Q 042307 602 KHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISC----SQLRAESFIRLRNLKVESCEKLTHIFSFSIS 677 (1314)
Q Consensus 602 ~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 677 (1314)
++|++.++.. ..++ ....+++|++|.+.++.....+.. ........++|+.|++++|+.+..+|. .+
T Consensus 728 ~~L~L~~n~i-~~lP------~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--si 798 (1153)
T PLN03210 728 SWLDLDETAI-EEFP------SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS--SI 798 (1153)
T ss_pred CeeecCCCcc-cccc------ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh--hh
Confidence 4444444331 1111 111244444444444322111000 000122357899999999988888873 46
Q ss_pred ccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCcccccccccccCccceeeeccccccccc
Q 042307 678 RGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIW 757 (1314)
Q Consensus 678 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~ 757 (1314)
+++++|+.|++++|..++.+|. ...+++|+.|++++|..+..++.. .++|+.|+++++.+..
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~--------------~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~-- 860 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPT--------------GINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEE-- 860 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCC--------------CCCccccCEEECCCCCcccccccc--ccccCEeECCCCCCcc--
Confidence 7899999999999998888772 225889999999999998887653 4789999999988764
Q ss_pred CCCCCCcccccCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccccccccc
Q 042307 758 HNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMDLEEI 811 (1314)
Q Consensus 758 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l 811 (1314)
+|.++..+++|+.|++++|++++.++. ....+++|+.+++++|..+..+
T Consensus 861 ---iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 861 ---VPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ---ChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccc
Confidence 456677899999999999999999844 3678899999999999998765
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.2e-34 Score=373.71 Aligned_cols=509 Identities=20% Similarity=0.214 Sum_probs=305.7
Q ss_pred CCCccEEEcccCCCc-ccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC-CCCcccccCccCcEE
Q 042307 330 LKNCTAISLHNCKIG-ELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL-SLPSSLHLLVNLRTL 406 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~-~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~-~lp~~~~~l~~L~~L 406 (1314)
..+++.|++++|.+. .++..+ .+++|++|++++|.+.+.+|.++|.++++|++|+|++|.+. .+|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 357999999999885 444444 89999999999999888899999889999999999999987 4454 568999999
Q ss_pred EcCCCcCCC--ccccCCCCCCCEEEccCccCc-ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcc
Q 042307 407 CLDNGVLGD--VAVIGELKQLEILSFQGSNIE-QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 407 ~L~~~~~~~--~~~~~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence 999999864 377999999999999999886 78999999999999999998655567766 99999999999999987
Q ss_pred ccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccc
Q 042307 484 QWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASIC 563 (1314)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 563 (1314)
. +..+..++++++|++|++++|.+....
T Consensus 225 ~------------~~~p~~l~~l~~L~~L~L~~n~l~~~~---------------------------------------- 252 (968)
T PLN00113 225 S------------GEIPYEIGGLTSLNHLDLVYNNLTGPI---------------------------------------- 252 (968)
T ss_pred C------------CcCChhHhcCCCCCEEECcCceecccc----------------------------------------
Confidence 6 556778899999999999987754221
Q ss_pred hhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhh
Q 042307 564 LKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEK 643 (1314)
Q Consensus 564 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 643 (1314)
+..+..+++|+.|++.++......+..+ ..+++|++|++++|.....++. ....+++|+.|++.++.....
T Consensus 253 --p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 253 --PSSLGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPE-----LVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred --ChhHhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCCh-----hHcCCCCCcEEECCCCccCCc
Confidence 1233445555556555544332222222 3355666666666543211110 112334444444444221111
Q ss_pred hhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceecccccee
Q 042307 644 ISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKL 723 (1314)
Q Consensus 644 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 723 (1314)
.+ .....+++|+.|++++|.....+| ..+..+++|+.|++++|.....++
T Consensus 324 ~~---~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~p------------------------- 373 (968)
T PLN00113 324 IP---VALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEIP------------------------- 373 (968)
T ss_pred CC---hhHhcCCCCCEEECcCCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeCC-------------------------
Confidence 10 112344555555555544332332 223445555555555543222111
Q ss_pred eccCCCcccccccccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHHHHhhcccEeeec
Q 042307 724 TLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIR 803 (1314)
Q Consensus 724 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 803 (1314)
..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|. +.... +..+..+++|+.|+++
T Consensus 374 -----------~~~~~~~~L~~L~l~~n~l~----~~~p~~~~~~~~L~~L~L~~n~-l~~~~-p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 374 -----------EGLCSSGNLFKLILFSNSLE----GEIPKSLGACRSLRRVRLQDNS-FSGEL-PSEFTKLPLVYFLDIS 436 (968)
T ss_pred -----------hhHhCcCCCCEEECcCCEec----ccCCHHHhCCCCCCEEECcCCE-eeeEC-ChhHhcCCCCCEEECc
Confidence 01122344555555555443 2233334455666666666653 33221 2335566666666666
Q ss_pred cccccccccccCccccccccccccchhhhHhhhccccccccccCCCCCCCCcceeeeecCCCcchhhccccccccccccc
Q 042307 804 KCMDLEEIVFPEEMIEEERKDIMLPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLQIVKCPELKAFILQNISTDMTAVGI 883 (1314)
Q Consensus 804 ~c~~l~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 883 (1314)
++.....+
T Consensus 437 ~N~l~~~~------------------------------------------------------------------------ 444 (968)
T PLN00113 437 NNNLQGRI------------------------------------------------------------------------ 444 (968)
T ss_pred CCcccCcc------------------------------------------------------------------------
Confidence 65322110
Q ss_pred cccccccccCCCccceecccCCCceeeecCCCCCCccccccEEEEecCCCccccccchHHhhcccccEEEEecCCchHHH
Q 042307 884 QPFFNKMVALPSLEEMVLSNMGNLKTIWHSQFAGESFCKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGACGSLQEI 963 (1314)
Q Consensus 884 ~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c~~l~~~ 963 (1314)
+.....+++|+.|++++|.....++.... .++|+.|++++|. ++...|.. +..+++|+.|++++|.....+
T Consensus 445 ---~~~~~~l~~L~~L~L~~n~~~~~~p~~~~----~~~L~~L~ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 445 ---NSRKWDMPSLQMLSLARNKFFGGLPDSFG----SKRLENLDLSRNQ-FSGAVPRK-LGSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred ---ChhhccCCCCcEEECcCceeeeecCcccc----cccceEEECcCCc-cCCccChh-hhhhhccCEEECcCCcceeeC
Confidence 00011334444555544433332222111 2455666665554 23233433 245666666666666555444
Q ss_pred hhccCCcccccccccccccceeeecccCccceecccCCCcceecCcccEEEEecCCCcccccchhHHhhhccccEEeEee
Q 042307 964 FDLQELNSEETHSGAVSRLGKLHVFRLPKLTKIWNKDPRGNLIFQNLVLVRIFECQRLKSVFPTSVAKSLLQLERLSINN 1043 (1314)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~i~~ 1043 (1314)
|. .+..+++|+.|+|++|.-...+ |..+..+++|+.|++++ ++++...|..+ ..+++|+.|++++
T Consensus 516 p~---------~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l-~~l~~L~~l~ls~ 580 (968)
T PLN00113 516 PD---------ELSSCKKLVSLDLSHNQLSGQI----PASFSEMPVLSQLDLSQ-NQLSGEIPKNL-GNVESLVQVNISH 580 (968)
T ss_pred Ch---------HHcCccCCCEEECCCCcccccC----ChhHhCcccCCEEECCC-CcccccCChhH-hcCcccCEEeccC
Confidence 43 3445566666666666533333 55566667777777765 34444456655 5667777777777
Q ss_pred cc
Q 042307 1044 CE 1045 (1314)
Q Consensus 1044 c~ 1045 (1314)
|+
T Consensus 581 N~ 582 (968)
T PLN00113 581 NH 582 (968)
T ss_pred Cc
Confidence 65
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.4e-34 Score=319.07 Aligned_cols=253 Identities=32% Similarity=0.543 Sum_probs=196.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc----ccChhHHHHHHHHHHhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFY----EESESGRARKLCERLRK 76 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~ 76 (1314)
+|+|+||||+||||||++++++...++.|++++|++++...+...++..|++.++.... ..........+.+.+.
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~- 99 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLK- 99 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHC-
T ss_pred EEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc-
Confidence 58999999999999999999997777889999999999999889999999999988743 2234445566666665
Q ss_pred CCeEEEEEeCCCCcccccccCCCCC--CCCceEEEEeccccccccccCCCccEEecCCCHHHHHHHHHHHhCCCC--CCc
Q 042307 77 EKKILVILDNIWANLDLENVGIPFG--DRGCGVLMTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKI--ENN 152 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~~~~~~~~~~~--~~~~~ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~--~~~ 152 (1314)
++++|+||||||+...|+.+..++. ..|++||||||+..++.........+++++|+.+||+++|.+.++... ...
T Consensus 100 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~ 179 (287)
T PF00931_consen 100 DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPE 179 (287)
T ss_dssp CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----T
T ss_pred cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7799999999999998887754433 368999999999988773222267899999999999999999997433 334
Q ss_pred cHHHHHHHHHHHhCCcHHHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCCCCCchhhhhheeecccccCchhhHHHHHh
Q 042307 153 DLKAVAVDIAKACGGLPIAIVTIARALRNK-NTFEWKNALRELTRPSSSSFSGVPAEAYKSIELSYNHLEGEELKSTFLL 231 (1314)
Q Consensus 153 ~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~f~~ 231 (1314)
..++.+++|+++|+|+|+||.++|++++.+ +..+|+.+++++...... ..+....+..++.+||+.|+++ +|+||.+
T Consensus 180 ~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~ 257 (287)
T PF00931_consen 180 DLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFSALELSYDSLPDE-LRRCFLY 257 (287)
T ss_dssp TSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHHHHHHHHHSSHTC-CHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccceechhcCCcc-HHHHHhh
Confidence 456789999999999999999999999666 789999999887653321 2235677999999999999998 8999999
Q ss_pred hccccccCCcC--HHHHHHhhcccccccC
Q 042307 232 CCLMDFIENPS--VLYLLSYGMGLGLFKG 258 (1314)
Q Consensus 232 ~~~~~fp~~~~--i~~l~~~w~~~~~~~~ 258 (1314)
||+ ||+++. .+.++++|+++|++..
T Consensus 258 L~~--f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 258 LSI--FPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp GGG--SGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred CcC--CCCCceECHHHHHHHHHHCCCCcc
Confidence 999 677766 5699999999999865
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.7e-33 Score=363.87 Aligned_cols=511 Identities=19% Similarity=0.178 Sum_probs=324.3
Q ss_pred CCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC-CCCcccc-cCccCcEEEcCCCcCCCccccCCCCCCCEEEc
Q 042307 353 PRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL-SLPSSLH-LLVNLRTLCLDNGVLGDVAVIGELKQLEILSF 430 (1314)
Q Consensus 353 ~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~-~lp~~~~-~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L 430 (1314)
.+++.|++++|...+.++.. |..+++|++|+|++|.+. .+|..+. ++++|++|++++|.+......+.+++|++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 47899999999877666654 589999999999999997 7887755 99999999999999876534567999999999
Q ss_pred cCccCc-ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCC
Q 042307 431 QGSNIE-QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSL 509 (1314)
Q Consensus 431 ~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 509 (1314)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. +..+..++++++|
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~------------~~~p~~l~~l~~L 214 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV------------GQIPRELGQMKSL 214 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc------------CcCChHHcCcCCc
Confidence 999987 78999999999999999998655677776 899999999999999875 5567788899999
Q ss_pred cEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchhh
Q 042307 510 NTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVENV 589 (1314)
Q Consensus 510 ~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 589 (1314)
+.|++++|.+.... +..++.+++|++|++.++......
T Consensus 215 ~~L~L~~n~l~~~~------------------------------------------p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 215 KWIYLGYNNLSGEI------------------------------------------PYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred cEEECcCCccCCcC------------------------------------------ChhHhcCCCCCEEECcCceecccc
Confidence 99999887754211 123455677777877776544333
Q ss_pred ccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecCCCcc
Q 042307 590 VYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLT 669 (1314)
Q Consensus 590 ~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 669 (1314)
+..+ ..+++|++|++++|.....++ ..+..+++|+.|++++|....
T Consensus 253 p~~l--~~l~~L~~L~L~~n~l~~~~p--------------------------------~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 253 PSSL--GNLKNLQYLFLYQNKLSGPIP--------------------------------PSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred ChhH--hCCCCCCEEECcCCeeeccCc--------------------------------hhHhhccCcCEEECcCCeecc
Confidence 3333 456677777777665321111 012234455555555543222
Q ss_pred cccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCccccccc-ccccCccceeee
Q 042307 670 HIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCS-VVAFPNLETLKL 748 (1314)
Q Consensus 670 ~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l 748 (1314)
.+| ..+..+++|+.|++.+|......+ ..+..+++|+.|++++|.....++. +..+++|+.|++
T Consensus 299 ~~p--~~~~~l~~L~~L~l~~n~~~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 299 EIP--ELVIQLQNLEILHLFSNNFTGKIP-------------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred CCC--hhHcCCCCCcEEECCCCccCCcCC-------------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 222 233455666666666554332222 0122345555555555443222221 234455666666
Q ss_pred cccccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccccccccccccCccccccccccccc
Q 042307 749 SAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMDLEEIVFPEEMIEEERKDIMLP 828 (1314)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~ 828 (1314)
++|.+.. ..+..+..+++|+.|++++|+ +.... +..+..+++|+.|++++|.....
T Consensus 364 s~n~l~~----~~p~~~~~~~~L~~L~l~~n~-l~~~~-p~~~~~~~~L~~L~L~~n~l~~~------------------ 419 (968)
T PLN00113 364 STNNLTG----EIPEGLCSSGNLFKLILFSNS-LEGEI-PKSLGACRSLRRVRLQDNSFSGE------------------ 419 (968)
T ss_pred CCCeeEe----eCChhHhCcCCCCEEECcCCE-ecccC-CHHHhCCCCCCEEECcCCEeeeE------------------
Confidence 6555432 123333344556666666642 33221 23345555666666655532111
Q ss_pred hhhhHhhhccccccccccCCCCCCCCcceeeeecCCCcchhhccccccccccccccccccccccCCCccceecccCCCce
Q 042307 829 QLNFLKMKDLAKLTRFCSGNCIELPSLKQLQIVKCPELKAFILQNISTDMTAVGIQPFFNKMVALPSLEEMVLSNMGNLK 908 (1314)
Q Consensus 829 ~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~ 908 (1314)
++..+..+++|+.|+++++.-..
T Consensus 420 ---------------------------------------------------------~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 420 ---------------------------------------------------------LPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred ---------------------------------------------------------CChhHhcCCCCCEEECcCCcccC
Confidence 11123366778888888764333
Q ss_pred eeecCCCCCCccccccEEEEecCCCccccccchHHhhcccccEEEEecCCchHHHhhccCCcccccccccccccceeeec
Q 042307 909 TIWHSQFAGESFCKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGACGSLQEIFDLQELNSEETHSGAVSRLGKLHVF 988 (1314)
Q Consensus 909 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 988 (1314)
.++.... .+++|+.|++.+|.... .+|... ..++|+.|++++|.....+|. .+..+++|+.|+++
T Consensus 443 ~~~~~~~---~l~~L~~L~L~~n~~~~-~~p~~~--~~~~L~~L~ls~n~l~~~~~~---------~~~~l~~L~~L~Ls 507 (968)
T PLN00113 443 RINSRKW---DMPSLQMLSLARNKFFG-GLPDSF--GSKRLENLDLSRNQFSGAVPR---------KLGSLSELMQLKLS 507 (968)
T ss_pred ccChhhc---cCCCCcEEECcCceeee-ecCccc--ccccceEEECcCCccCCccCh---------hhhhhhccCEEECc
Confidence 2222111 25788888888886443 345433 457888888888766555554 44567788888888
Q ss_pred ccCccceecccCCCcceecCcccEEEEecCCCcccccchhHHhhhccccEEeEeecccceeEecccccccCCcceEeccc
Q 042307 989 RLPKLTKIWNKDPRGNLIFQNLVLVRIFECQRLKSVFPTSVAKSLLQLERLSINNCESVEEIVANEGRADEATTKFIFPS 1068 (1314)
Q Consensus 989 ~~~~l~~i~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~ 1068 (1314)
+|.-...+ |..+..+++|+.|++++ +.++...|..+ ..+++|+.|++++|. +...++.. -..+++
T Consensus 508 ~N~l~~~~----p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~~~~p~~--------l~~l~~ 572 (968)
T PLN00113 508 ENKLSGEI----PDELSSCKKLVSLDLSH-NQLSGQIPASF-SEMPVLSQLDLSQNQ-LSGEIPKN--------LGNVES 572 (968)
T ss_pred CCcceeeC----ChHHcCccCCCEEECCC-CcccccCChhH-hCcccCCEEECCCCc-ccccCChh--------HhcCcc
Confidence 87644444 66777788888888866 55666667666 678888888888765 33222211 012455
Q ss_pred cCceecccCCC
Q 042307 1069 STFLRLRDLPC 1079 (1314)
Q Consensus 1069 L~~L~l~~~~~ 1079 (1314)
|+.+++++++-
T Consensus 573 L~~l~ls~N~l 583 (968)
T PLN00113 573 LVQVNISHNHL 583 (968)
T ss_pred cCEEeccCCcc
Confidence 66666666553
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=6.7e-24 Score=228.60 Aligned_cols=390 Identities=20% Similarity=0.256 Sum_probs=235.6
Q ss_pred CCCccEEEcccCCCcccCCC----cCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcE
Q 042307 330 LKNCTAISLHNCKIGELVDG----LECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRT 405 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~ 405 (1314)
.-..+.++.+++.+..+... +-.+.-++|++++|.. ..+...+|.++.+|+.+++..|.++.+|.......+|+.
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl-~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL-SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEK 129 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeecccccc-ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeE
Confidence 33445566666665544221 1233455666666653 344444556677777777777776666665555556777
Q ss_pred EEcCCCcCCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCc
Q 042307 406 LCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTF 482 (1314)
Q Consensus 406 L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (1314)
|+|.+|.|..+ ..+..+..||.|||+.|.|+.+|. ++..-.++++|+|++| .++.+..+.|..+.+|-.|.|+.|.
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCc
Confidence 77777766665 456666667777777776666653 2444456667777665 5666666556666666677776666
Q ss_pred cccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCcc
Q 042307 483 IQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASI 562 (1314)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 562 (1314)
+. .-.+..+++|++|+.|++..|.+.... +.. +...++++.+++..|++.
T Consensus 209 it------------tLp~r~Fk~L~~L~~LdLnrN~irive-~lt-----------------FqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 209 IT------------TLPQRSFKRLPKLESLDLNRNRIRIVE-GLT-----------------FQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred cc------------ccCHHHhhhcchhhhhhccccceeeeh-hhh-----------------hcCchhhhhhhhhhcCcc
Confidence 65 223345666666666666666543221 111 233445556666666776
Q ss_pred chhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchh
Q 042307 563 CLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLE 642 (1314)
Q Consensus 563 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~ 642 (1314)
.+..++|..+.++++|+|+.+... .+..... .++..|+.|++++|..-..-. ......++|+.|+++. +.++
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~l-fgLt~L~~L~lS~NaI~rih~-----d~WsftqkL~~LdLs~-N~i~ 330 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWL-FGLTSLEQLDLSYNAIQRIHI-----DSWSFTQKLKELDLSS-NRIT 330 (873)
T ss_pred cccCcceeeecccceeecccchhh-hhhcccc-cccchhhhhccchhhhheeec-----chhhhcccceeEeccc-cccc
Confidence 777777777788888888765432 2222211 357778888888876432211 1234467788888877 5555
Q ss_pred hhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccce
Q 042307 643 KISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRK 722 (1314)
Q Consensus 643 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 722 (1314)
.+..+. +..+..|++|.+++ +.+..+.. ..+.++.+|++|+++++..--.+ ++.......+++|+.
T Consensus 331 ~l~~~s--f~~L~~Le~LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N~ls~~I----------EDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 331 RLDEGS--FRVLSQLEELNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSNELSWCI----------EDAAVAFNGLPSLRK 396 (873)
T ss_pred cCChhH--HHHHHHhhhhcccc-cchHHHHh-hHHHHhhhhhhhcCcCCeEEEEE----------ecchhhhccchhhhh
Confidence 544332 45677888888887 46666544 35667889999998876422111 111123345888888
Q ss_pred eeccCCCcccccc--cccccCccceeeecccccccccCCCCCCcccccCCccEEEEccC
Q 042307 723 LTLKSLPQLRSFC--SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGC 779 (1314)
Q Consensus 723 L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 779 (1314)
|.+.+. +++.++ .+..+++|+.|++.+|.+.++..+.+.. + .|++|.+..-
T Consensus 397 L~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~----m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 397 LRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP----M-ELKELVMNSS 449 (873)
T ss_pred eeecCc-eeeecchhhhccCcccceecCCCCcceeeccccccc----c-hhhhhhhccc
Confidence 888874 455544 2567888888888888887776555543 3 6777766553
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.2e-24 Score=231.10 Aligned_cols=341 Identities=19% Similarity=0.211 Sum_probs=257.2
Q ss_pred ccCCCccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCc
Q 042307 328 DTLKNCTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~ 404 (1314)
..+...+.|++++|++.++.... ++++|+.+.+..|. ...+|... ....||+.|+|.+|.|.++ .+++..++.||
T Consensus 75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred cCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 34556788999999998876553 99999999999887 46788733 4456799999999999988 55789999999
Q ss_pred EEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 405 TLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 405 ~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
.|||+.|.++.+ .+|..-.++++|+|++|.|+.+- ..|..+.+|.+|.|+.| .++.+|...|.+|++|+.|+|..|
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc
Confidence 999999999887 77888889999999999999773 56888999999999997 899999998999999999999999
Q ss_pred ccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcc--cccccceeEEEEcccc----CCCCCCccceEEE
Q 042307 482 FIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGF--LSQKLKRYKVFIGDEW----NWPDSYENQRILK 555 (1314)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~~~~~~~----~~~~~~~~l~~l~ 555 (1314)
.+. ...-..+..|+.|+.|.+..|++..+..++ ...+++.+++..+... .|.-+...++.|+
T Consensus 232 ~ir------------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 232 RIR------------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred cee------------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 885 222346778899999999999999888876 4567777776654432 5677777888888
Q ss_pred eecCCccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecc
Q 042307 556 LKLNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSL 635 (1314)
Q Consensus 556 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l 635 (1314)
++.|.+..+....+...++|++|+|+.+...+-....+ ..+..|++|.++.|... .+.+ ..+..+.+|++|++
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf--~~L~~Le~LnLs~Nsi~-~l~e----~af~~lssL~~LdL 372 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF--RVLSQLEELNLSHNSID-HLAE----GAFVGLSSLHKLDL 372 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccccCChhHH--HHHHHhhhhcccccchH-HHHh----hHHHHhhhhhhhcC
Confidence 88888888888888888888888888766443333333 44677888888887621 1111 12344667777777
Q ss_pred cCccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEecc
Q 042307 636 SNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACK 692 (1314)
Q Consensus 636 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~ 692 (1314)
+...--..+......+..+++|++|.+.+ ++++.++. ..+.+++.|++|++.++.
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence 76322111222223345578888888887 57777765 456778888888887765
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-22 Score=231.01 Aligned_cols=143 Identities=22% Similarity=0.387 Sum_probs=118.6
Q ss_pred EEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCC
Q 042307 336 ISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLG 414 (1314)
Q Consensus 336 l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~ 414 (1314)
++.+...+..+|..+ .-..+..|++..|.. ...|-++..+.-+|+.||+++|.+...|..+..+.+|+.|+++.|.+.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~-l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSL-LSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhcccccc-ccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 456666777777665 334478888888764 344455556666799999999999999999999999999999999987
Q ss_pred Cc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 415 DV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 415 ~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
.. .+++++++|++|+|.+|.+..+|.++..+++|++|++++| ....+|.- +..++.+..+..++|
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchh-HHhhhHHHHHhhhcc
Confidence 65 7889999999999999999999999999999999999997 67788876 788888888888777
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=9.2e-20 Score=237.73 Aligned_cols=343 Identities=19% Similarity=0.269 Sum_probs=224.8
Q ss_pred cCCCccEEEcccCCC-------cccCCCc-CC-CCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCccccc
Q 042307 329 TLKNCTAISLHNCKI-------GELVDGL-EC-PRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHL 399 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l-------~~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~ 399 (1314)
.+.+++.|.+..+.. ..+|..+ .+ .+||.|.+.++. ...+|..+ ...+|+.|++++|.+..+|..+..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC--CccCCcEEECcCcccccccccccc
Confidence 477888888866542 2456655 33 469999999876 46777764 578999999999999999999999
Q ss_pred CccCcEEEcCCCc-CCCccccCCCCCCCEEEccCc-cCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEE
Q 042307 400 LVNLRTLCLDNGV-LGDVAVIGELKQLEILSFQGS-NIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELY 477 (1314)
Q Consensus 400 l~~L~~L~L~~~~-~~~~~~~~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~ 477 (1314)
+++|++|++++|. +..++.++.+++|++|++++| .+..+|.+|+++++|++|++++|..++.+|.. + ++++|++|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEe
Confidence 9999999999876 666778999999999999998 67799999999999999999999999999986 3 899999999
Q ss_pred cCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEee
Q 042307 478 LGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLK 557 (1314)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~ 557 (1314)
+++|... ...+. ...+|+.|+++++.+..+|..+...+|..|.+..........
T Consensus 711 Lsgc~~L------------~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~----------- 764 (1153)
T PLN03210 711 LSGCSRL------------KSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE----------- 764 (1153)
T ss_pred CCCCCCc------------ccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccc-----------
Confidence 9998543 11111 245789999999999999887766666655443211100000
Q ss_pred cCCccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccC
Q 042307 558 LNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSN 637 (1314)
Q Consensus 558 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~ 637 (1314)
......+..+...++|+.|+++++.....++..+ ..+++|+.|++++|..++.++.. ..+++|+.|++++
T Consensus 765 --~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 765 --RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTG------INLESLESLDLSG 834 (1153)
T ss_pred --cccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCC
Confidence 0000111112223456666666555444443333 34566666666666555444321 1355666666666
Q ss_pred ccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceec
Q 042307 638 LMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEF 717 (1314)
Q Consensus 638 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 717 (1314)
|..+..++. ..++|+.|+++++ .++.+|. .+..+++|+.|++.+|+.+..++. ....+
T Consensus 835 c~~L~~~p~------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~-------------~~~~L 892 (1153)
T PLN03210 835 CSRLRTFPD------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL-------------NISKL 892 (1153)
T ss_pred CCccccccc------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCc-------------ccccc
Confidence 655543321 1245666666552 4444442 345566666666666666555441 12345
Q ss_pred cccceeeccCCCccccc
Q 042307 718 SQLRKLTLKSLPQLRSF 734 (1314)
Q Consensus 718 ~~L~~L~l~~~~~l~~~ 734 (1314)
++|+.+++++|+++..+
T Consensus 893 ~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 893 KHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCCCeeecCCCcccccc
Confidence 56666666666655543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=8.8e-24 Score=217.72 Aligned_cols=175 Identities=25% Similarity=0.378 Sum_probs=124.4
Q ss_pred ccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCC
Q 042307 333 CTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~ 411 (1314)
+..+.+++|.+..+.+.. .+..+.+|++.+|.. ...|+.+ +++..+..|+.++|.+..+|+.++.+.+|+.|+.++|
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l-~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL-SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchh-hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 455667777776665555 667777777777763 4556555 6777777777777777777777777777777777777
Q ss_pred cCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccC
Q 042307 412 VLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQ 490 (1314)
Q Consensus 412 ~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 490 (1314)
.+..+ ++++.+..|..|+..+|++..+|.+++.+.+|..|++.+| ++.++|+..+. ++.|++|+...|.+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L------- 195 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLL------- 195 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhh-------
Confidence 76654 7777777777777777777777777777777777777775 67777776444 77777777766655
Q ss_pred CcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 491 SSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 491 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
+..|.+++.+.+|..|++..|.+..+|.
T Consensus 196 ------~tlP~~lg~l~~L~~LyL~~Nki~~lPe 223 (565)
T KOG0472|consen 196 ------ETLPPELGGLESLELLYLRRNKIRFLPE 223 (565)
T ss_pred ------hcCChhhcchhhhHHHHhhhcccccCCC
Confidence 4556667777777777777777766663
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.4e-22 Score=217.72 Aligned_cols=365 Identities=19% Similarity=0.270 Sum_probs=240.6
Q ss_pred ccCCCccEEEcccCCC--cccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCc
Q 042307 328 DTLKNCTAISLHNCKI--GELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~ 404 (1314)
+.++-+|-+++++|.+ ..+|... .+++++-|.|.... ...+|+++ +++.+|++|.+++|++.++--.++.|+.||
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 4567788899999987 4778877 88888888887655 45678776 889999999999999888877788888999
Q ss_pred EEEcCCCcCCC---ccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 405 TLCLDNGVLGD---VAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 405 ~L~L~~~~~~~---~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
.++++.|++.. ++.+.+|..|.+||||+|.+++.|..+..-+++-.|+||+| ++..||...+.+|+.|-.|+|++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc
Confidence 99999988753 37788899999999999999999999988899999999997 788999888888999999999988
Q ss_pred ccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCc
Q 042307 482 FIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNAS 561 (1314)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~ 561 (1314)
.+ ...|..++.+.+|++|.+++|.+..+. |+
T Consensus 161 rL-------------e~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-------Lr----------------------------- 191 (1255)
T KOG0444|consen 161 RL-------------EMLPPQIRRLSMLQTLKLSNNPLNHFQ-------LR----------------------------- 191 (1255)
T ss_pred hh-------------hhcCHHHHHHhhhhhhhcCCChhhHHH-------Hh-----------------------------
Confidence 87 445667888888888888887643211 11
Q ss_pred cchhhHHHhhhcccceeecccccCc-hhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccc
Q 042307 562 ICLKDEFFMQLKGLEELWLDEVQGV-ENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMN 640 (1314)
Q Consensus 562 ~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~ 640 (1314)
-...+++|+.|++++.+.. .+++..+ ..+.+|..++++.|..- .+++ ..-.+++|+.|++++ +.
T Consensus 192 ------QLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~Lp-~vPe-----cly~l~~LrrLNLS~-N~ 256 (1255)
T KOG0444|consen 192 ------QLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNLP-IVPE-----CLYKLRNLRRLNLSG-NK 256 (1255)
T ss_pred ------cCccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCCC-cchH-----HHhhhhhhheeccCc-Cc
Confidence 1112455555666554432 2233333 34666777777666531 1111 234456666666666 44
Q ss_pred hhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCc-ceeeeeccccccCCcccccceeccc
Q 042307 641 LEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSM-KHIFVVGREDDINNTEVVDKIEFSQ 719 (1314)
Q Consensus 641 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1314)
++++... .+.+.+|+.|+++. +.++.+| .....++.|+.|.+.++..- +.+| ..+..+.+
T Consensus 257 iteL~~~---~~~W~~lEtLNlSr-NQLt~LP--~avcKL~kL~kLy~n~NkL~FeGiP-------------SGIGKL~~ 317 (1255)
T KOG0444|consen 257 ITELNMT---EGEWENLETLNLSR-NQLTVLP--DAVCKLTKLTKLYANNNKLTFEGIP-------------SGIGKLIQ 317 (1255)
T ss_pred eeeeecc---HHHHhhhhhhcccc-chhccch--HHHhhhHHHHHHHhccCcccccCCc-------------cchhhhhh
Confidence 4433322 45566677777776 4566665 34556666666666554321 1122 12334444
Q ss_pred cceeeccCCCccccccc-ccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCccc
Q 042307 720 LRKLTLKSLPQLRSFCS-VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKY 784 (1314)
Q Consensus 720 L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 784 (1314)
|+.+...+ +++.-.|. +..++.|+.|.++.|.+.++ |..+.-++.|+.|+++.++++..
T Consensus 318 Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTL-----PeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 318 LEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITL-----PEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hHHHHhhc-cccccCchhhhhhHHHHHhcccccceeec-----hhhhhhcCCcceeeccCCcCccC
Confidence 44444443 22333332 34455666666666655433 33344456666666666666654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=9.7e-24 Score=217.41 Aligned_cols=393 Identities=22% Similarity=0.275 Sum_probs=248.2
Q ss_pred ccCCCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEE
Q 042307 328 DTLKNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTL 406 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L 406 (1314)
..+..+.++++++|++..+|+.+ .+..++.|+.++|.. ..+|+.+ ..+..|+.|+.++|.+..+|++++.+..|..|
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l-s~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL-SELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH-hhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 34667888999999998888887 888888889888874 5678776 77888999999999999999999999999999
Q ss_pred EcCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccc
Q 042307 407 CLDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQW 485 (1314)
Q Consensus 407 ~L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (1314)
+..+|+++.. .+++++.+|..|++.+|+++++|...-+++.|++||...| .++.+|+. ++.+.+|+.|++..|.+..
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIRF 220 (565)
T ss_pred hccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhccccc
Confidence 9988888764 8888888899999999999888877767899999998886 78888887 8899999999998888753
Q ss_pred ccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchh
Q 042307 486 ETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLK 565 (1314)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 565 (1314)
.| ++..++.|.+|++..|.+..+|... ......+..+++..|.....+
T Consensus 221 lP--------------ef~gcs~L~Elh~g~N~i~~lpae~------------------~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 221 LP--------------EFPGCSLLKELHVGENQIEMLPAEH------------------LKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred CC--------------CCCccHHHHHHHhcccHHHhhHHHH------------------hcccccceeeeccccccccCc
Confidence 33 5666667777777777666666543 112233445566666555554
Q ss_pred hHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecc----cCccch
Q 042307 566 DEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSL----SNLMNL 641 (1314)
Q Consensus 566 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l----~~~~~l 641 (1314)
.+ ...+++|++|+++++... ..+..+ +++ +|++|.+.||+.-+- .. +....+.-.-|++|.- .+...-
T Consensus 269 de-~clLrsL~rLDlSNN~is-~Lp~sL--gnl-hL~~L~leGNPlrTi-Rr--~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 269 DE-ICLLRSLERLDLSNNDIS-SLPYSL--GNL-HLKFLALEGNPLRTI-RR--EIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred hH-HHHhhhhhhhcccCCccc-cCCccc--ccc-eeeehhhcCCchHHH-HH--HHHcccHHHHHHHHHHhhccCCCCCC
Confidence 33 345778888888876532 233333 455 788888888863210 00 0000000000111110 000000
Q ss_pred hh--------hhcCCCccccccccceeEEecCCCcccccchhhh-ccCCCccEEEEEeccCcceeeeeccccccCCcccc
Q 042307 642 EK--------ISCSQLRAESFIRLRNLKVESCEKLTHIFSFSIS-RGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVV 712 (1314)
Q Consensus 642 ~~--------~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 712 (1314)
+. ..........+.+.+.|.+++ ..++.+|..-+- +.-.-....+++.+. +.++|.
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk------------- 405 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPK------------- 405 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccch-Hhhhhh-------------
Confidence 00 000001122345677888877 567777642211 111123445555543 333331
Q ss_pred cceeccccceeeccCCCccccccc-ccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCcccc
Q 042307 713 DKIEFSQLRKLTLKSLPQLRSFCS-VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYL 785 (1314)
Q Consensus 713 ~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 785 (1314)
....+..+...-+.....+...+. +..+++|..|++++|... ++|...+.+..|+.|+|+. +.+..+
T Consensus 406 ~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-----~LP~e~~~lv~Lq~LnlS~-NrFr~l 473 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-----DLPEEMGSLVRLQTLNLSF-NRFRML 473 (565)
T ss_pred hhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-----hcchhhhhhhhhheecccc-cccccc
Confidence 111222333333333333333332 456788899999988764 3455566677899999988 466665
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=5.5e-21 Score=218.49 Aligned_cols=461 Identities=21% Similarity=0.270 Sum_probs=283.8
Q ss_pred ccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCC
Q 042307 333 CTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDN 410 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~ 410 (1314)
+.++++..|.+-..|-.+ ++-+|++|++++|. ....|..+ ..+.+|+.|+++.|.|.++|.+.+++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~-~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ-ISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccc-cccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 677888888876655333 56669999999887 45677766 889999999999999999999999999999999999
Q ss_pred CcCCC-ccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccccc
Q 042307 411 GVLGD-VAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEG 489 (1314)
Q Consensus 411 ~~~~~-~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (1314)
|.+.. +.++..+++|++||+++|.+..+|.-+..++.+..+..++|.++..++. .. .+++++..+.+.
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~----- 169 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG----- 169 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc-----
Confidence 99876 4889999999999999999999999999999999999999854544443 22 777777766654
Q ss_pred CCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHH
Q 042307 490 QSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFF 569 (1314)
Q Consensus 490 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 569 (1314)
+.++.++..+.. .|++..|.+... . .
T Consensus 170 -------~~~~~~i~~l~~--~ldLr~N~~~~~-d--------------------------------------------l 195 (1081)
T KOG0618|consen 170 -------GSFLIDIYNLTH--QLDLRYNEMEVL-D--------------------------------------------L 195 (1081)
T ss_pred -------cchhcchhhhhe--eeecccchhhhh-h--------------------------------------------h
Confidence 445555555555 577766654311 0 1
Q ss_pred hhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCC
Q 042307 570 MQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQL 649 (1314)
Q Consensus 570 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 649 (1314)
..+.+|+.+....++.. .+. ..-++|+.|+...|+..+. .
T Consensus 196 s~~~~l~~l~c~rn~ls-----~l~-~~g~~l~~L~a~~n~l~~~----------------------------------~ 235 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLS-----ELE-ISGPSLTALYADHNPLTTL----------------------------------D 235 (1081)
T ss_pred hhccchhhhhhhhcccc-----eEE-ecCcchheeeeccCcceee----------------------------------c
Confidence 11223333332221110 000 1124455555555543211 0
Q ss_pred ccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCC
Q 042307 650 RAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLP 729 (1314)
Q Consensus 650 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 729 (1314)
....-.+|+.+++++ +++..+| .+...+.+|+.+++.++.. ..++. .
T Consensus 236 ~~p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~l-~~lp~-------------r---------------- 282 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISH-NNLSNLP--EWIGACANLEALNANHNRL-VALPL-------------R---------------- 282 (1081)
T ss_pred cccccccceeeecch-hhhhcch--HHHHhcccceEecccchhH-HhhHH-------------H----------------
Confidence 011123566666666 4566666 4566677777777766543 11110 1
Q ss_pred cccccccccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHHHHhhc-ccEeeecccccc
Q 042307 730 QLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQ-LQHLEIRKCMDL 808 (1314)
Q Consensus 730 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~-L~~L~l~~c~~l 808 (1314)
.....+|+.|.+..|.+..+ +.....+.+|+.|++.. +++.+++. ..+..+.. |..|+.+.. .+
T Consensus 283 -------i~~~~~L~~l~~~~nel~yi-----p~~le~~~sL~tLdL~~-N~L~~lp~-~~l~v~~~~l~~ln~s~n-~l 347 (1081)
T KOG0618|consen 283 -------ISRITSLVSLSAAYNELEYI-----PPFLEGLKSLRTLDLQS-NNLPSLPD-NFLAVLNASLNTLNVSSN-KL 347 (1081)
T ss_pred -------HhhhhhHHHHHhhhhhhhhC-----CCcccccceeeeeeehh-ccccccch-HHHhhhhHHHHHHhhhhc-cc
Confidence 12233455555555544332 33333467788888887 57777643 32332222 444443322 11
Q ss_pred ccccccCccccccccccccchhhhHhhhccccccccccCCCCCCCCcceeeeecCCCcchhhcccccccccccccccccc
Q 042307 809 EEIVFPEEMIEEERKDIMLPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLQIVKCPELKAFILQNISTDMTAVGIQPFFN 888 (1314)
Q Consensus 809 ~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~ 888 (1314)
+... +.
T Consensus 348 ~~lp---------------------------------~~----------------------------------------- 353 (1081)
T KOG0618|consen 348 STLP---------------------------------SY----------------------------------------- 353 (1081)
T ss_pred cccc---------------------------------cc-----------------------------------------
Confidence 1110 00
Q ss_pred ccccCCCccceecccCCCceeeecCCCCCCccccccEEEEecCCCccccccchHHhhcccccEEEEecCCchHHHhhccC
Q 042307 889 KMVALPSLEEMVLSNMGNLKTIWHSQFAGESFCKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGACGSLQEIFDLQE 968 (1314)
Q Consensus 889 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 968 (1314)
+...++.|+.|.+.+..--...++.. .++..||.|+++++. +.. ||...+.++..||+|++++ +.++.+|.
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l---~~~~hLKVLhLsyNr-L~~-fpas~~~kle~LeeL~LSG-NkL~~Lp~--- 424 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVL---VNFKHLKVLHLSYNR-LNS-FPASKLRKLEELEELNLSG-NKLTTLPD--- 424 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhh---ccccceeeeeecccc-ccc-CCHHHHhchHHhHHHhccc-chhhhhhH---
Confidence 01134556666666632222222222 125778888887765 332 7888888888888888888 67777776
Q ss_pred CcccccccccccccceeeecccCccceecccCCCcceecCcccEEEEecCCCcccccchhHHhhhccccEEeEeecc
Q 042307 969 LNSEETHSGAVSRLGKLHVFRLPKLTKIWNKDPRGNLIFQNLVLVRIFECQRLKSVFPTSVAKSLLQLERLSINNCE 1045 (1314)
Q Consensus 969 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~i~~c~ 1045 (1314)
....+..|+.|...++. +.++ | .+..++.|+.+|+ +|++|+.+....... -++|+.|++++..
T Consensus 425 ------tva~~~~L~tL~ahsN~-l~~f----P-e~~~l~qL~~lDl-S~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 425 ------TVANLGRLHTLRAHSNQ-LLSF----P-ELAQLPQLKVLDL-SCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred ------HHHhhhhhHHHhhcCCc-eeec----h-hhhhcCcceEEec-ccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 55567778877776654 3333 5 5677788888888 578887753322211 1678888888754
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.6e-21 Score=211.45 Aligned_cols=340 Identities=22% Similarity=0.286 Sum_probs=234.4
Q ss_pred ccCCCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC--CCCcccccCccCc
Q 042307 328 DTLKNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL--SLPSSLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~--~lp~~~~~l~~L~ 404 (1314)
..+.+++.|.|....+..+|... .+.+|.+|.+++|.. ..+..++ +.++.||.+++..|+++ .+|+.+.++..|.
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L-~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL-ISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh-Hhhhhhh-ccchhhHHHhhhccccccCCCCchhcccccce
Confidence 45778999999999999999988 999999999999984 4555554 88999999999999988 6899999999999
Q ss_pred EEEcCCCcCCCc-cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCc
Q 042307 405 TLCLDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTF 482 (1314)
Q Consensus 405 ~L~L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (1314)
+|||++|++... ..+..-+++-+|+||+|+|..+|.+ +-+|+.|-+||||.| ++..+|+. +..|.+|++|.|++|.
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCCh
Confidence 999999999875 7888999999999999999999976 578999999999997 89999998 9999999999999998
Q ss_pred cccccccCCcccccccCcccccCCCCCcEEEeEecCC--CCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCC
Q 042307 483 IQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDP--KVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNA 560 (1314)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~ 560 (1314)
+. ..-+..+..++.|+.|.+++++- ..+|.. .+...+++.++++.|+
T Consensus 185 L~------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-------------------ld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 185 LN------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-------------------LDDLHNLRDVDLSENN 233 (1255)
T ss_pred hh------------HHHHhcCccchhhhhhhcccccchhhcCCCc-------------------hhhhhhhhhccccccC
Confidence 75 44556677777888888887652 334432 2233455566666665
Q ss_pred ccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccc
Q 042307 561 SICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMN 640 (1314)
Q Consensus 561 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~ 640 (1314)
...++ .....+.+|+.|+|++++..+-.... +...+|++|+++.|..+. ++ .....+++|+.|...+ ++
T Consensus 234 Lp~vP-ecly~l~~LrrLNLS~N~iteL~~~~---~~W~~lEtLNlSrNQLt~-LP-----~avcKL~kL~kLy~n~-Nk 302 (1255)
T KOG0444|consen 234 LPIVP-ECLYKLRNLRRLNLSGNKITELNMTE---GEWENLETLNLSRNQLTV-LP-----DAVCKLTKLTKLYANN-NK 302 (1255)
T ss_pred CCcch-HHHhhhhhhheeccCcCceeeeeccH---HHHhhhhhhccccchhcc-ch-----HHHhhhHHHHHHHhcc-Cc
Confidence 54443 56666777777777766533211111 224567777777765321 11 1234455555555544 22
Q ss_pred hh--hhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceecc
Q 042307 641 LE--KISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFS 718 (1314)
Q Consensus 641 l~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1314)
++ .++. .++.+.+|+.+...+ +++.-+|. ....++.|+.|.+..+..+. +| ..++-++
T Consensus 303 L~FeGiPS---GIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL~L~~NrLiT-LP-------------eaIHlL~ 362 (1255)
T KOG0444|consen 303 LTFEGIPS---GIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKLKLDHNRLIT-LP-------------EAIHLLP 362 (1255)
T ss_pred ccccCCcc---chhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHhcccccceee-ch-------------hhhhhcC
Confidence 21 1111 144555555555554 34444442 23455666666665544322 22 1334456
Q ss_pred ccceeeccCCCcccc
Q 042307 719 QLRKLTLKSLPQLRS 733 (1314)
Q Consensus 719 ~L~~L~l~~~~~l~~ 733 (1314)
.|+.|++.+.|++..
T Consensus 363 ~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLVM 377 (1255)
T ss_pred CcceeeccCCcCccC
Confidence 666666666665543
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3.8e-18 Score=155.10 Aligned_cols=167 Identities=26% Similarity=0.372 Sum_probs=138.9
Q ss_pred CcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCC-ccccCC
Q 042307 343 IGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGD-VAVIGE 421 (1314)
Q Consensus 343 l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~~~~ 421 (1314)
+.++|..+.+++++.|.+++|.. ..+|+.+ ..+++|++|++++|+++++|.+++.+++||.|++.-|.+.. +..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl-~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKL-TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCce-eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 45667777888888888888874 5667776 78899999999999999999999999999999998888765 488899
Q ss_pred CCCCCEEEccCccCc--ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccC
Q 042307 422 LKQLEILSFQGSNIE--QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRAS 499 (1314)
Q Consensus 422 L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 499 (1314)
++.|++|||.+|++. .+|..|-.|+.|+.|.|+.| ..+-+|++ ++++++||.|.+++|.+ -..
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndl-------------l~l 165 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDL-------------LSL 165 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCch-------------hhC
Confidence 999999999998887 78888888888888889886 66777877 89999999999988877 356
Q ss_pred cccccCCCCCcEEEeEecCCCCCCCcc
Q 042307 500 LHELKHLSSLNTLEIQVRDPKVLPKGF 526 (1314)
Q Consensus 500 ~~~l~~l~~L~~L~l~~~~~~~~~~~~ 526 (1314)
+.+++.+.+|++|++.+|..+.+|+.+
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhh
Confidence 678888889999999999988888765
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=7.7e-17 Score=146.67 Aligned_cols=155 Identities=23% Similarity=0.351 Sum_probs=141.6
Q ss_pred cccCCCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcE
Q 042307 327 RDTLKNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRT 405 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~ 405 (1314)
--.++.++++.+++|++..+|+.+ .+.+|.+|++++|. ..++|.++ +.+.+||.|+++-|.+..+|..|+.++-|++
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhh
Confidence 335678899999999999999998 99999999999887 47888887 9999999999999999999999999999999
Q ss_pred EEcCCCcCCC---ccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCc
Q 042307 406 LCLDNGVLGD---VAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTF 482 (1314)
Q Consensus 406 L~L~~~~~~~---~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (1314)
|||.+|.+.. +..|..+..|+.|.|+.|.+.-+|.++++|++||.|.+..| .+-++|.. ++.++.|++|++.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccce
Confidence 9999999864 36777889999999999999999999999999999999997 67789988 9999999999999998
Q ss_pred ccc
Q 042307 483 IQW 485 (1314)
Q Consensus 483 ~~~ 485 (1314)
+..
T Consensus 185 l~v 187 (264)
T KOG0617|consen 185 LTV 187 (264)
T ss_pred eee
Confidence 853
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=1e-15 Score=158.82 Aligned_cols=287 Identities=18% Similarity=0.211 Sum_probs=186.1
Q ss_pred EEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCC-Cc
Q 042307 335 AISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDN-GV 412 (1314)
Q Consensus 335 ~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~-~~ 412 (1314)
..+.++..+.++|...-. .-..++|..|. ...+|+.+|+.+++||.||||+|.|+.| |+.|..+.+|-.|.+-+ |.
T Consensus 50 ~VdCr~~GL~eVP~~LP~-~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPP-ETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcccCCC-cceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 345556667777775422 35567777776 4678889999999999999999999988 88899999988777766 88
Q ss_pred CCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcc------
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFI------ 483 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~------ 483 (1314)
|+++ ..|++|..|+-|.+..|++.-+ ...+..|++|..|.+..| .+..++...+..+..++++++..|.+
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccccccc
Confidence 8887 7799999999999999988855 566888999999999886 78888887788899999998876653
Q ss_pred ccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEE--Eccc------cCCCCCCccceEEE
Q 042307 484 QWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVF--IGDE------WNWPDSYENQRILK 555 (1314)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~--~~~~------~~~~~~~~~l~~l~ 555 (1314)
.|..... ...+.+++.........+....+..++.......++++.-. .... ...+...++++.++
T Consensus 207 ~wla~~~------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 207 PWLADDL------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred chhhhHH------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 2222110 00111111111111111222222222111111111111000 0000 01134567788999
Q ss_pred eecCCccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecc
Q 042307 556 LKLNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSL 635 (1314)
Q Consensus 556 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l 635 (1314)
+++|.+..+.+++|..+..+++|.|..++.. .+.. -.+.++..|+.|++++|...... |........|.+|.+
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~-~~f~~ls~L~tL~L~~N~it~~~-----~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSS-GMFQGLSGLKTLSLYDNQITTVA-----PGAFQTLFSLSTLNL 353 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHH-HhhhccccceeeeecCCeeEEEe-----cccccccceeeeeeh
Confidence 9999999999999999999999999876632 2222 22367889999999999865432 223344555666665
Q ss_pred cC
Q 042307 636 SN 637 (1314)
Q Consensus 636 ~~ 637 (1314)
..
T Consensus 354 ~~ 355 (498)
T KOG4237|consen 354 LS 355 (498)
T ss_pred cc
Confidence 44
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=9.9e-13 Score=157.92 Aligned_cols=157 Identities=22% Similarity=0.243 Sum_probs=108.6
Q ss_pred ccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCc
Q 042307 333 CTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~ 412 (1314)
-..|+++++.+..+|..+. ++|+.|++.+|.+ ..+|. .+++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~L-t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL-TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcC-CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 4467888888888887653 4688888888764 34553 256788888888888888753 3577888888888
Q ss_pred CCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCc
Q 042307 413 LGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSS 492 (1314)
Q Consensus 413 ~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 492 (1314)
+..++. ...+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. ..+|+.|++++|.+...+
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~LP----- 338 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSLP----- 338 (788)
T ss_pred hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccccc-----
Confidence 766533 235677888888888888763 467888888887 66777652 235677778777764211
Q ss_pred ccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 493 SERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 493 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
.+ ..+|+.|++++|.+..+|.
T Consensus 339 ---------~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 339 ---------TL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ---------cc--ccccceEecCCCccCCCCC
Confidence 11 1367888888888777664
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=1.6e-12 Score=156.08 Aligned_cols=237 Identities=19% Similarity=0.107 Sum_probs=159.6
Q ss_pred ccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEE
Q 042307 328 DTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLC 407 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~ 407 (1314)
....+++.|++.+|.+..+|.. .++|++|++++|.+. .+|. ..++|+.|++++|.+..+|..+ .+|+.|+
T Consensus 219 ~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~ 288 (788)
T PRK15387 219 CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLW 288 (788)
T ss_pred chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---hhcCEEE
Confidence 4456899999999999998864 578999999998753 5664 2468899999999998887643 5688899
Q ss_pred cCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccc
Q 042307 408 LDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWET 487 (1314)
Q Consensus 408 L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (1314)
+++|.++.++. .+++|++|++++|.++.+|... .+|+.|++++| .+..+|.. ..+|++|++++|.+...+
T Consensus 289 Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l----p~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 289 IFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPTL----PSGLQELSVSDNQLASLP 358 (788)
T ss_pred CcCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccC-cccccccc----ccccceEecCCCccCCCC
Confidence 99999887643 2578999999999999887633 45778888887 67777752 257899999999885222
Q ss_pred ccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhH
Q 042307 488 EGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDE 567 (1314)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 567 (1314)
. . ..+|+.|++++|.+..+|... . .++.++++.|.+..++.
T Consensus 359 ~-------------l---p~~L~~L~Ls~N~L~~LP~l~--~--------------------~L~~LdLs~N~Lt~LP~- 399 (788)
T PRK15387 359 T-------------L---PSELYKLWAYNNRLTSLPALP--S--------------------GLKELIVSGNRLTSLPV- 399 (788)
T ss_pred C-------------C---CcccceehhhccccccCcccc--c--------------------ccceEEecCCcccCCCC-
Confidence 1 1 245777888888877766431 2 23445555554443332
Q ss_pred HHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCc
Q 042307 568 FFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNL 638 (1314)
Q Consensus 568 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 638 (1314)
..++|+.|+++++... .++ ....+|+.|++++|... .++. .+..+++|+.|+++++
T Consensus 400 ---l~s~L~~LdLS~N~Ls-sIP-----~l~~~L~~L~Ls~NqLt-~LP~-----sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 400 ---LPSELKELMVSGNRLT-SLP-----MLPSGLLSLSVYRNQLT-RLPE-----SLIHLSSETTVNLEGN 455 (788)
T ss_pred ---cccCCCEEEccCCcCC-CCC-----cchhhhhhhhhccCccc-ccCh-----HHhhccCCCeEECCCC
Confidence 1246677777765432 121 11345677777776632 2221 2344667777777764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=1e-12 Score=159.19 Aligned_cols=164 Identities=18% Similarity=0.262 Sum_probs=111.8
Q ss_pred CCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcC
Q 042307 330 LKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLD 409 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~ 409 (1314)
..+.+.+++.++.+..+|..+ .++++.|++++|.+ ..+|..++ .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L-tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNEL-KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC-CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 345677888888888888754 34788888888874 46777653 478888888888888887654 368888888
Q ss_pred CCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccc
Q 042307 410 NGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETE 488 (1314)
Q Consensus 410 ~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (1314)
+|.+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++| .++.+|.. +. .+|++|++++|.+...+
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP- 320 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTALP- 320 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccccCC-
Confidence 8887765 3332 478888888888887777654 47888888886 66777654 22 35777777777664211
Q ss_pred cCCcccccccCcccccCCCCCcEEEeEecCCCCCC
Q 042307 489 GQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLP 523 (1314)
Q Consensus 489 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 523 (1314)
..+ .++|+.|++++|.++.+|
T Consensus 321 ------------~~l--~~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 321 ------------ETL--PPGLKTLEAGENALTSLP 341 (754)
T ss_pred ------------ccc--cccceeccccCCccccCC
Confidence 111 145666666666655444
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=2.5e-12 Score=155.88 Aligned_cols=228 Identities=20% Similarity=0.262 Sum_probs=161.6
Q ss_pred ccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEE
Q 042307 328 DTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLC 407 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~ 407 (1314)
.+.+.++.|++++|.+..+|..+. ++|+.|++++|.+ ..+|..+ ..+|+.|+|++|.+..+|..+. .+|++|+
T Consensus 196 ~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~L-tsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 196 CIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQL-TSIPATL---PDTIQEMELSINRITELPERLP--SALQSLD 268 (754)
T ss_pred ccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCcc-ccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence 356789999999999999987653 6899999999975 4678765 3479999999999999998765 5899999
Q ss_pred cCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccc
Q 042307 408 LDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWE 486 (1314)
Q Consensus 408 L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (1314)
+++|.+..+ ..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. + ..+|+.|++++|.+..
T Consensus 269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 269 LFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTLEAGENALTS- 339 (754)
T ss_pred CcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceeccccCCcccc-
Confidence 999998876 3343 589999999999999987654 57999999997 67788765 3 3689999999998752
Q ss_pred cccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhh
Q 042307 487 TEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKD 566 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 566 (1314)
.+..+ .++|+.|++++|.+..+|..+ ...++.++++.|....+++
T Consensus 340 ------------LP~~l--~~sL~~L~Ls~N~L~~LP~~l---------------------p~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 340 ------------LPASL--PPELQVLDVSKNQITVLPETL---------------------PPTITTLDVSRNALTNLPE 384 (754)
T ss_pred ------------CChhh--cCcccEEECCCCCCCcCChhh---------------------cCCcCEEECCCCcCCCCCH
Confidence 22223 268999999999888776533 1234555566555555443
Q ss_pred HHHhhhcccceeecccccCchhhccccc--cCCCCCCceEEeecCC
Q 042307 567 EFFMQLKGLEELWLDEVQGVENVVYELD--REGFPSLKHLHIQNNP 610 (1314)
Q Consensus 567 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 610 (1314)
... ..|+.|++++++.. .++..+. ...++++..+.+.+|+
T Consensus 385 ~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 385 NLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 322 24556666654432 2211110 0223556666666655
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=7.7e-14 Score=145.08 Aligned_cols=265 Identities=20% Similarity=0.214 Sum_probs=195.2
Q ss_pred CcccCCCccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecC-CcCCCCCcc-cccCc
Q 042307 326 DRDTLKNCTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTD-MHLLSLPSS-LHLLV 401 (1314)
Q Consensus 326 ~~~~~~~l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~-n~~~~lp~~-~~~l~ 401 (1314)
+.+.......|.|..|.|..+|+.. .+++||.|+|++|.+ ..|.+++|.+++.|-.|-+.+ |.|+.+|.. |.+|.
T Consensus 62 P~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I-s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI-SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cccCCCcceEEEeccCCcccCChhhccchhhhceecccccch-hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 4567778899999999999999987 999999999999985 567777889999988877776 999999875 99999
Q ss_pred cCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCC------------ccchhh
Q 042307 402 NLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLK------------AISSNV 466 (1314)
Q Consensus 402 ~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~------------~~~~~~ 466 (1314)
.|+.|.+..|++..+ ..+..|++|..|.+..|.+..++. .+..+..++++.+..|..+- ..|..
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie- 219 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE- 219 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-
Confidence 999999999998876 889999999999999999998887 78889999999877654111 11111
Q ss_pred hcCCCCCcEEEcCCCccccccc--------c----CCccc-c-cccCcccccCCCCCcEEEeEecCCCCCCCcccccccc
Q 042307 467 ISNLSQLEELYLGDTFIQWETE--------G----QSSSE-R-SRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLK 532 (1314)
Q Consensus 467 l~~l~~L~~L~l~~~~~~~~~~--------~----~~~~~-~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 532 (1314)
++..+...-..+.+..+..... + ..... . .......++.|++|+.|++++|.++.+.+.
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~------- 292 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG------- 292 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh-------
Confidence 2222211111111111110000 0 00000 0 111223488999999999999999887654
Q ss_pred eeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCc
Q 042307 533 RYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYL 612 (1314)
Q Consensus 533 ~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 612 (1314)
|+.....++.+.|..|.+..+..++|..+.+|+.|+|.+++...-.+..| .....|.+|.+-.|+..
T Consensus 293 -----------aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 293 -----------AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFN 359 (498)
T ss_pred -----------hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehccCccc
Confidence 46677778888999999999999999999999999999877543333333 45678899999888743
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.26 E-value=1.3e-13 Score=145.00 Aligned_cols=322 Identities=17% Similarity=0.162 Sum_probs=165.6
Q ss_pred CceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccC
Q 042307 601 LKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGL 680 (1314)
Q Consensus 601 L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 680 (1314)
|+.|.++|+..... .+.-......|+++.|.+.+|.+++....... ...+++|+.|.+..|..+++..-.....++
T Consensus 140 lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl-a~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 140 LKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSL-ARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHH-HHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 55555555554321 01111223455666666666655544322111 234566777777777776665443455666
Q ss_pred CCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCcccccccccccCccceeeecccccccccCCC
Q 042307 681 PQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQ 760 (1314)
Q Consensus 681 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 760 (1314)
++|+++++++|+.+..-. ...-......++.+...+|..+.. ..
T Consensus 216 ~kL~~lNlSwc~qi~~~g-----------v~~~~rG~~~l~~~~~kGC~e~~l-------------------------e~ 259 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNG-----------VQALQRGCKELEKLSLKGCLELEL-------------------------EA 259 (483)
T ss_pred hhHHHhhhccCchhhcCc-----------chHHhccchhhhhhhhcccccccH-------------------------HH
Confidence 777777777776554300 000111222333343334332211 01
Q ss_pred CCCcccccCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccccccccccccCccccccccccccchhhhHhhhcccc
Q 042307 761 LPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMDLEEIVFPEEMIEEERKDIMLPQLNFLKMKDLAK 840 (1314)
Q Consensus 761 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~ 840 (1314)
+...-.++.-+.++++..|+.+++.........+..||.|..++|..+...+...-
T Consensus 260 l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL------------------------ 315 (483)
T KOG4341|consen 260 LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL------------------------ 315 (483)
T ss_pred HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH------------------------
Confidence 11111234456677777888787764444556677888888888876543211000
Q ss_pred ccccccCCCCCCCCcceeeeecCCCcchhhccccccccccccccccccccccCCCccceecccCCCceeeecCCCCCCcc
Q 042307 841 LTRFCSGNCIELPSLKQLQIVKCPELKAFILQNISTDMTAVGIQPFFNKMVALPSLEEMVLSNMGNLKTIWHSQFAGESF 920 (1314)
Q Consensus 841 ~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 920 (1314)
..+.++|+.+.+++|..+.+.....+..+ .
T Consensus 316 -------------------------------------------------g~~~~~L~~l~l~~c~~fsd~~ft~l~rn-~ 345 (483)
T KOG4341|consen 316 -------------------------------------------------GQHCHNLQVLELSGCQQFSDRGFTMLGRN-C 345 (483)
T ss_pred -------------------------------------------------hcCCCceEEEeccccchhhhhhhhhhhcC-C
Confidence 01334455555555554443322222211 2
Q ss_pred ccccEEEEecCCCccccccchHHhhcccccEEEEecCCchHHHhhccCCcccccccccccccceeeecccCccceecccC
Q 042307 921 CKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGACGSLQEIFDLQELNSEETHSGAVSRLGKLHVFRLPKLTKIWNKD 1000 (1314)
Q Consensus 921 ~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~ 1000 (1314)
+.|+.+++.+|...++.--.+...+++.|++|.++.|..+.+-.. ..-.........|..+.+.+||.+++-.
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi----~~l~~~~c~~~~l~~lEL~n~p~i~d~~--- 418 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI----RHLSSSSCSLEGLEVLELDNCPLITDAT--- 418 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh----hhhhhccccccccceeeecCCCCchHHH---
Confidence 455555555555544321223334566666666666655544310 0000011234567777777777665532
Q ss_pred CCcceecCcccEEEEecCCCcccccchhHHhhhccccEEeEee
Q 042307 1001 PRGNLIFQNLVLVRIFECQRLKSVFPTSVAKSLLQLERLSINN 1043 (1314)
Q Consensus 1001 ~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~i~~ 1043 (1314)
.+.+..+++|+.+++.+|...+.-....+...+|+++......
T Consensus 419 Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 419 LEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred HHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 2345677889999999999888876677767777776655443
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=9.1e-10 Score=144.58 Aligned_cols=268 Identities=16% Similarity=0.237 Sum_probs=165.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-cCHHHHHHHHHHHhCCCccc--------------cChhH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-PDIKKIQGQIADKLGLKFYE--------------ESESG 65 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~--------------~~~~~ 65 (1314)
++.|+|++|.||||++.+++++. +.++|+++... .+.......++..++..... .....
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS 107 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH
Confidence 47899999999999999988532 25999999754 45566666666666421111 01112
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCCCccc------ccccCCCCCCCCceEEEEecccccccc-cc-CCCccEEec----CC
Q 042307 66 RARKLCERLRK-EKKILVILDNIWANLD------LENVGIPFGDRGCGVLMTARSQDVLSS-KM-DCQNNFLVG----AL 132 (1314)
Q Consensus 66 ~~~~~~~~l~~-~~~~LlvlD~v~~~~~------~~~~~~~~~~~~~~ilvTtr~~~~~~~-~~-~~~~~~~l~----~l 132 (1314)
....+...+.. +.+++||+||+...++ +..+ ......+.+++||||...-... .. ......++. +|
T Consensus 108 ~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l-~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f 186 (903)
T PRK04841 108 LFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFF-LRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAF 186 (903)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHH-HHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCC
Confidence 23345555544 6899999999976531 2122 2223356788899998421110 01 112245555 89
Q ss_pred CHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCC-chhhhh
Q 042307 133 NESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALRELTRPSSSSFSGV-PAEAYK 211 (1314)
Q Consensus 133 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~-~~~~~~ 211 (1314)
+.+|+.++|....|... ..+.+.+|.+.++|+|+++..++..++..... .......+ .+. ...+..
T Consensus 187 ~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~ 253 (903)
T PRK04841 187 DHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRL--------AGINASHLSD 253 (903)
T ss_pred CHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhh--------cCCCchhHHH
Confidence 99999999998876533 24557799999999999999998877544210 01111111 110 112333
Q ss_pred he-eecccccCchhhHHHHHhhccccccCCcCHHHHHHhhcccccccCcCCHHHHHHHHHHHHHHHhhcccccc-C-CCC
Q 042307 212 SI-ELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLD-G-PES 288 (1314)
Q Consensus 212 ~l-~~s~~~L~~~~~~~~f~~~~~~~fp~~~~i~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~-~-~~~ 288 (1314)
.+ .-.++.|+++ .++++...|++ + .+..+ +...-. | . .+ ....+.+|.+.+++.. . .+.
T Consensus 254 ~l~~~v~~~l~~~-~~~~l~~~a~~--~-~~~~~-l~~~l~--~---~----~~----~~~~L~~l~~~~l~~~~~~~~~ 315 (903)
T PRK04841 254 YLVEEVLDNVDLE-TRHFLLRCSVL--R-SMNDA-LIVRVT--G---E----EN----GQMRLEELERQGLFIQRMDDSG 315 (903)
T ss_pred HHHHHHHhcCCHH-HHHHHHHhccc--c-cCCHH-HHHHHc--C---C----Cc----HHHHHHHHHHCCCeeEeecCCC
Confidence 22 2237799999 79999999994 3 44433 222111 1 0 01 1346888988988653 2 234
Q ss_pred ceeeechhHHHHHHHHhc
Q 042307 289 EYFSVHDVVRDVAISIAS 306 (1314)
Q Consensus 289 ~~~~mH~lv~~~~~~~~~ 306 (1314)
..|.+|++++++++....
T Consensus 316 ~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 316 EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred CEEehhHHHHHHHHHHHH
Confidence 589999999999988763
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=4.6e-11 Score=147.39 Aligned_cols=129 Identities=26% Similarity=0.351 Sum_probs=105.5
Q ss_pred hCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCc--CCCc--cccCCCCCCCEEEccCc-cCcccchhhcCCCCCC
Q 042307 375 TRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGV--LGDV--AVIGELKQLEILSFQGS-NIEQLPREIGQLTRLR 449 (1314)
Q Consensus 375 ~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~--~~~~--~~~~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~ 449 (1314)
......|...+.+|.+..++.+..+ ++|++|-+.+|. +..+ ..|..++.|++|||++| .+..+|.+|+.|-+||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 4567889999999988877766443 479999999886 4444 45889999999999988 7889999999999999
Q ss_pred EEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecC
Q 042307 450 SLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRD 518 (1314)
Q Consensus 450 ~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 518 (1314)
||++++. .+..+|.+ +++|+.|.+|++..+... ...+.....+++|++|.+....
T Consensus 599 yL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l------------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRL------------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCC-CccccchH-HHHHHhhheecccccccc------------ccccchhhhcccccEEEeeccc
Confidence 9999995 89999998 999999999999876542 2234455668999999987654
No 26
>PF05729 NACHT: NACHT domain
Probab=99.08 E-value=8.6e-10 Score=111.68 Aligned_cols=139 Identities=19% Similarity=0.315 Sum_probs=93.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccC----CCEEEEEEeccCcCHH---HHHHHHHHHhCCCccccChhHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKL----FDEVVYADVSQTPDIK---KIQGQIADKLGLKFYEESESGRARKLCER 73 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 73 (1314)
++.|+|.+|+||||++++++.++..... +..++|+..+...... .+...+............ ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~~ 76 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE-----ELLQEL 76 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH-----HHHHHH
Confidence 5899999999999999999999886543 3457788877644322 344444444432211111 123333
Q ss_pred HhcCCeEEEEEeCCCCcccc-------------cccCCCC-CCCCceEEEEeccccc--cccccCCCccEEecCCCHHHH
Q 042307 74 LRKEKKILVILDNIWANLDL-------------ENVGIPF-GDRGCGVLMTARSQDV--LSSKMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 74 l~~~~~~LlvlD~v~~~~~~-------------~~~~~~~-~~~~~~ilvTtr~~~~--~~~~~~~~~~~~l~~l~~~ea 137 (1314)
..+.+++++|+|++|+...- ..+ .+. ..++.+++||+|.... ..........+++++|++++.
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQL-LPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHH-hhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 34579999999999877431 111 111 2357899999999876 222345556899999999999
Q ss_pred HHHHHHHh
Q 042307 138 WDLFKKLV 145 (1314)
Q Consensus 138 ~~l~~~~~ 145 (1314)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998876
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.05 E-value=5.5e-12 Score=132.87 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=104.0
Q ss_pred cCCCccceecccCCCceeeecCCCCCCccccccEEEEecCCCccccccchHHhhcccccEEEEecCCchHHHhhccCCcc
Q 042307 892 ALPSLEEMVLSNMGNLKTIWHSQFAGESFCKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGACGSLQEIFDLQELNS 971 (1314)
Q Consensus 892 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 971 (1314)
.+..|+.+..++|.++.+.....+...+ .+|+.+.+.+|..+++.--..+..+++.|+.+++.+|.....-.-.+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s---- 366 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS---- 366 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCC-CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh----
Confidence 5667899999999888766544444443 89999999999998875444455678899999999987776541100
Q ss_pred cccccccccccceeeecccCccceecccC-CCcceecCcccEEEEecCCCcccccchhHHhhhccccEEeEeeccccee
Q 042307 972 EETHSGAVSRLGKLHVFRLPKLTKIWNKD-PRGNLIFQNLVLVRIFECQRLKSVFPTSVAKSLLQLERLSINNCESVEE 1049 (1314)
Q Consensus 972 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 1049 (1314)
....++.|+.|.++.|...++--... .........|..+.+.+|+.++...-+.+ ..+++||.+++..|..+..
T Consensus 367 ---ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 367 ---LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTK 441 (483)
T ss_pred ---hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhh
Confidence 22467889999999888666530000 11223456788889999998887655544 6778888888888876643
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.02 E-value=1.8e-08 Score=110.91 Aligned_cols=176 Identities=16% Similarity=0.221 Sum_probs=112.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHH----hc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERL----RK 76 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~ 76 (1314)
+++|+|++|+||||+++.++....... + .++|+. ....+..+.+..++..++....+.........+...+ ..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 378999999999999999998876321 1 233432 2344677888899999987755443333333443332 34
Q ss_pred CCeEEEEEeCCCCcc--cccccCC--CC-C--CCCceEEEEeccccc---cc-----cccCCCccEEecCCCHHHHHHHH
Q 042307 77 EKKILVILDNIWANL--DLENVGI--PF-G--DRGCGVLMTARSQDV---LS-----SKMDCQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~--~~~~~~~--~~-~--~~~~~ilvTtr~~~~---~~-----~~~~~~~~~~l~~l~~~ea~~l~ 141 (1314)
+++.++|+||++... .++.+.. .. . .....|++|...... .. ........+.+++++.+|..+++
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 788999999998763 3333221 11 1 122344555543311 00 01122456789999999999999
Q ss_pred HHHhC---CCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042307 142 KKLVG---DKIENNDLKAVAVDIAKACGGLPIAIVTIARAL 179 (1314)
Q Consensus 142 ~~~~~---~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 179 (1314)
...+. ......-..+.++.|++.++|.|..|..++..+
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 87763 211223345788999999999999999888776
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.01 E-value=7.7e-09 Score=120.22 Aligned_cols=271 Identities=18% Similarity=0.243 Sum_probs=174.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChh--------------H
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESES--------------G 65 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~--------------~ 65 (1314)
++.|..|+|.||||++.+++...+ + -..|.|+++++.. +.......+++.++.-.++..+. .
T Consensus 39 L~li~APAGfGKttl~aq~~~~~~-~--~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~ 115 (894)
T COG2909 39 LILISAPAGFGKTTLLAQWRELAA-D--GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES 115 (894)
T ss_pred EEEEeCCCCCcHHHHHHHHHHhcC-c--ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence 478999999999999999998433 2 2349999998755 66777777777776443332221 1
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCCCccc------ccccCCCCCCCCceEEEEecccccccc-ccC-CCccEEec----CC
Q 042307 66 RARKLCERLRK-EKKILVILDNIWANLD------LENVGIPFGDRGCGVLMTARSQDVLSS-KMD-CQNNFLVG----AL 132 (1314)
Q Consensus 66 ~~~~~~~~l~~-~~~~LlvlD~v~~~~~------~~~~~~~~~~~~~~ilvTtr~~~~~~~-~~~-~~~~~~l~----~l 132 (1314)
.+..+...+.. .++..+||||-.-..+ ++-+ +....++-..+||||.+.-... .+. ....++++ .|
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fL-l~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf 194 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFL-LKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRF 194 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHH-HHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcC
Confidence 23444444443 4789999999644321 2222 3334467899999999753321 111 12234444 59
Q ss_pred CHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCCCCCchhhh-
Q 042307 133 NESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRNK-NTFEWKNALRELTRPSSSSFSGVPAEAY- 210 (1314)
Q Consensus 133 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~- 210 (1314)
+.+|+.++|..+.+...+ +..+..+.+...|.+-|+..++=.+++. +.+.-... .++....+.
T Consensus 195 ~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~-----------LsG~~~~l~d 259 (894)
T COG2909 195 DTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG-----------LSGAASHLSD 259 (894)
T ss_pred ChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh-----------ccchHHHHHH
Confidence 999999999998765443 4457789999999999999999888744 43332221 112211111
Q ss_pred hheeecccccCchhhHHHHHhhccccccCCcCHHHHHHhhcccccccCcCCHHHHHHHHHHHHHHHhhcccccc--CCCC
Q 042307 211 KSIELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLD--GPES 288 (1314)
Q Consensus 211 ~~l~~s~~~L~~~~~~~~f~~~~~~~fp~~~~i~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~--~~~~ 288 (1314)
...+--++.||++ .+.++..+|+++...+ +|+.--.+ ++.....+++|.+++++.. .++.
T Consensus 260 YL~eeVld~Lp~~-l~~FLl~~svl~~f~~----eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~~ 321 (894)
T COG2909 260 YLVEEVLDRLPPE-LRDFLLQTSVLSRFND----ELCNALTG-------------EENGQAMLEELERRGLFLQRLDDEG 321 (894)
T ss_pred HHHHHHHhcCCHH-HHHHHHHHHhHHHhhH----HHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCCC
Confidence 1223346789999 8999999999641111 22221111 1112246899999998763 4677
Q ss_pred ceeeechhHHHHHHHHhccc
Q 042307 289 EYFSVHDVVRDVAISIASRD 308 (1314)
Q Consensus 289 ~~~~mH~lv~~~~~~~~~~e 308 (1314)
..|..|.+..+|.+..-+.+
T Consensus 322 ~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 322 QWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred ceeehhHHHHHHHHhhhccc
Confidence 89999999999998877663
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=2.6e-10 Score=129.85 Aligned_cols=181 Identities=25% Similarity=0.269 Sum_probs=120.4
Q ss_pred CCCccEEEcccCCCc-----ccCCCc-CCCCccEEEeCCCCCCc-----ccCchhhhCCCcccEEEecCCcCCC-CCccc
Q 042307 330 LKNCTAISLHNCKIG-----ELVDGL-ECPRLKFFHISPREGFI-----KIPDNFFTRLTELRVLDFTDMHLLS-LPSSL 397 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~-----~l~~~~-~~~~L~~L~l~~~~~~~-----~~~~~~f~~l~~L~~L~Ls~n~~~~-lp~~~ 397 (1314)
+..++.+++.++.+. .++... ..++++.|+++++.... ......|..+.+|+.|++++|.+.. .+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 344778888888873 233333 66678888888776431 1112345778899999999888863 35555
Q ss_pred ccCcc---CcEEEcCCCcCCC-----c-cccCCC-CCCCEEEccCccCc-----ccchhhcCCCCCCEEeeccCCCCCc-
Q 042307 398 HLLVN---LRTLCLDNGVLGD-----V-AVIGEL-KQLEILSFQGSNIE-----QLPREIGQLTRLRSLNLSSCYQLKA- 461 (1314)
Q Consensus 398 ~~l~~---L~~L~L~~~~~~~-----~-~~~~~L-~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~- 461 (1314)
..+.+ |++|++++|.+.. + ..+..+ ++|+.|++++|.++ .++..+..+.+|++|++++| .+..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~ 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDA 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchH
Confidence 55555 9999999888763 1 455666 88899999998877 34556677788999999887 4442
Q ss_pred ----cchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 462 ----ISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 462 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
++.. +..+++|++|++++|.+... ........+..+++|++|+++++.+.
T Consensus 181 ~~~~l~~~-l~~~~~L~~L~L~~n~i~~~--------~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 181 GIRALAEG-LKANCNLEVLDLNNNGLTDE--------GASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHH-HHhCCCCCEEeccCCccChH--------HHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2222 45567889999988876410 11223344566788888888877654
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=4.5e-11 Score=130.78 Aligned_cols=180 Identities=24% Similarity=0.328 Sum_probs=125.5
Q ss_pred ccCCCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEE
Q 042307 328 DTLKNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTL 406 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L 406 (1314)
..+......+++.|++.++|..+ .|..|..+.+..|.+ ..+|..+ ..+..|.+|||+.|++..+|..++.|+ |++|
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVL 148 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeE
Confidence 34555566777777777777766 666677777777663 4556554 677777777777777777777766654 7777
Q ss_pred EcCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccc
Q 042307 407 CLDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQW 485 (1314)
Q Consensus 407 ~L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (1314)
.+++|+++.+ ..++.+.+|..||.+.|.+..+|..++.+.+|+.|++..| .+..+|++ +..| .|..||++.|.+
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNki-- 223 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKI-- 223 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCce--
Confidence 7777777654 6677777777777777777777777777777777777775 56677776 5544 467777777766
Q ss_pred ccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcc
Q 042307 486 ETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGF 526 (1314)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 526 (1314)
..++..+.+|..|++|-+.+|.+..-|..+
T Consensus 224 -----------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 224 -----------SYLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred -----------eecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 345556777777777777777766655443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.3e-10 Score=116.51 Aligned_cols=135 Identities=22% Similarity=0.294 Sum_probs=117.3
Q ss_pred CCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeecc
Q 042307 376 RLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSS 455 (1314)
Q Consensus 376 ~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 455 (1314)
....|..||||+|.|+.+-.+..-++.+|.|++++|.+..+..+..|++|+.|||++|.++++-.+-.+|.|.++|.|++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45678999999999999988888899999999999999988889999999999999999998877778899999999999
Q ss_pred CCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 456 CYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
| .++.+.. +++|-+|..|++++|.|.. -.....+++++.|+++.+.+|.+..++.
T Consensus 362 N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~-----------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 N-KIETLSG--LRKLYSLVNLDLSSNQIEE-----------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h-hHhhhhh--hHhhhhheeccccccchhh-----------HHHhcccccccHHHHHhhcCCCccccch
Confidence 7 6777655 8889999999999998852 3345678999999999999998877765
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=4.3e-11 Score=130.94 Aligned_cols=150 Identities=23% Similarity=0.386 Sum_probs=103.9
Q ss_pred cCCCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEE
Q 042307 329 TLKNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLC 407 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~ 407 (1314)
.+..+..+.+..|.+..+|..+ .+..|++|+++.|.. ..+|..+ +.+ -|++|-+++|.++.+|..++.+..|..||
T Consensus 96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~l-C~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGL-CDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhh-hcC-cceeEEEecCccccCCcccccchhHHHhh
Confidence 3445566667777777777666 677777777777763 4456555 333 47777777777777777777777777777
Q ss_pred cCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 408 LDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 408 L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
.+.|.+..+ ..++.+..|+.|+++.|++..+|.+++.| .|..||++.| ++..+|.. |.+|+.|++|-|.+|.+.
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCC
Confidence 777776654 66777777777777777777777777633 4667777765 67777776 777777777777777664
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=6.9e-10 Score=108.67 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=48.7
Q ss_pred hCCCcccEEEecCCcCCCCCcccc-cCccCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchhh-cCCCCCCEEe
Q 042307 375 TRLTELRVLDFTDMHLLSLPSSLH-LLVNLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREI-GQLTRLRSLN 452 (1314)
Q Consensus 375 ~~l~~L~~L~Ls~n~~~~lp~~~~-~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~ 452 (1314)
.+..++|.|+|.+|.|+.+. .++ .+.+|+.|++++|.++.++.+..+++|++|++++|.|+.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45556777788887777663 344 56778888888888887777888888888888888888776555 3578888888
Q ss_pred eccCCCCCccch-hhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeE
Q 042307 453 LSSCYQLKAISS-NVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQ 515 (1314)
Q Consensus 453 L~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 515 (1314)
+++| ++.++.. ..++.+++|++|++.+|.+... .......+..+++|+.||-.
T Consensus 95 L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~---------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK---------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS---------TTHHHHHHHH-TT-SEETTE
T ss_pred CcCC-cCCChHHhHHHHcCCCcceeeccCCcccch---------hhHHHHHHHHcChhheeCCE
Confidence 8876 5555432 2266788888888888877421 12233445667778877654
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.91 E-value=7.1e-10 Score=126.24 Aligned_cols=159 Identities=20% Similarity=0.206 Sum_probs=90.4
Q ss_pred CCCCccEEEeCCCCCCcc----cCchhhhCCCcccEEEecCCcCCC-------CCcccccCccCcEEEcCCCcCCC--cc
Q 042307 351 ECPRLKFFHISPREGFIK----IPDNFFTRLTELRVLDFTDMHLLS-------LPSSLHLLVNLRTLCLDNGVLGD--VA 417 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~----~~~~~f~~l~~L~~L~Ls~n~~~~-------lp~~~~~l~~L~~L~L~~~~~~~--~~ 417 (1314)
.+.+|+.|++.++..... ++.. +...+.++.|+++++.+.. ++..+.++++|+.|++++|.+.. ..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 455577777777664221 2222 3456667777777766552 23455667777777777777652 23
Q ss_pred ccCCC---CCCCEEEccCccCc-----ccchhhcCC-CCCCEEeeccCCCCC-----ccchhhhcCCCCCcEEEcCCCcc
Q 042307 418 VIGEL---KQLEILSFQGSNIE-----QLPREIGQL-TRLRSLNLSSCYQLK-----AISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 418 ~~~~L---~~L~~L~L~~~~i~-----~lp~~i~~L-~~L~~L~L~~~~~l~-----~~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
.+..+ ++|++|++++|.+. .+...+..+ ++|+.|++++|. +. .++.. +..+++|++|++++|.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 33333 33777777777665 223445556 777777777763 33 12222 45566777777777766
Q ss_pred ccccccCCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 484 QWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
.. .........+..+++|++|+++++.+.
T Consensus 178 ~~--------~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 178 GD--------AGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred ch--------HHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 41 000122233445567777777766543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.8e-09 Score=105.75 Aligned_cols=121 Identities=22% Similarity=0.346 Sum_probs=41.7
Q ss_pred CCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCccc-ccCccCcEEEc
Q 042307 331 KNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSL-HLLVNLRTLCL 408 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~-~~l~~L~~L~L 408 (1314)
.++|.|+|.+|.|..+.... .+.+|++|++++|.+ ..++. +..+++|+.|++++|.++.+++.+ ..+++|+.|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I-~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI-TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCC-ccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 35677777777777665443 466777777777764 33432 466777777777777777775544 35677777777
Q ss_pred CCCcCCCc---cccCCCCCCCEEEccCccCcccch----hhcCCCCCCEEeec
Q 042307 409 DNGVLGDV---AVIGELKQLEILSFQGSNIEQLPR----EIGQLTRLRSLNLS 454 (1314)
Q Consensus 409 ~~~~~~~~---~~~~~L~~L~~L~L~~~~i~~lp~----~i~~L~~L~~L~L~ 454 (1314)
++|.+.++ ..++.+++|++|++.+|.+..-+. -|..+++|+.||-.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 77776543 556667777777777776664432 24556666666543
No 37
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.77 E-value=4.7e-07 Score=105.85 Aligned_cols=263 Identities=18% Similarity=0.116 Sum_probs=147.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC-c--cccChhHHHHHHHHHHhc-C
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK-F--YEESESGRARKLCERLRK-E 77 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~--~~~~~~~~~~~~~~~l~~-~ 77 (1314)
+.|+|++|+|||++++.++++.......-.++|+++....+...++..+++++... . .+.+..+....+.+.+.+ +
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERD 137 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 67999999999999999999886543234578888888888888999999998752 1 112233445566666653 4
Q ss_pred CeEEEEEeCCCCcc------cccccCCCCC-CCCce--EEEEecccccccc------ccCCCccEEecCCCHHHHHHHHH
Q 042307 78 KKILVILDNIWANL------DLENVGIPFG-DRGCG--VLMTARSQDVLSS------KMDCQNNFLVGALNESEAWDLFK 142 (1314)
Q Consensus 78 ~~~LlvlD~v~~~~------~~~~~~~~~~-~~~~~--ilvTtr~~~~~~~------~~~~~~~~~l~~l~~~ea~~l~~ 142 (1314)
+..+||+|+++... .+..+...+. ..+++ +|.++++..+... ..-....+.+++++.++..+++.
T Consensus 138 ~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred CEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 67899999998753 1222211111 12333 6666665443221 01113467899999999999999
Q ss_pred HHhCCCC-CCccHHHHHHHHHHHh----CCcHHHHHHHHHHH--h---cC---ChhHHHHHHHHhcCCCCCCCCCCchhh
Q 042307 143 KLVGDKI-ENNDLKAVAVDIAKAC----GGLPIAIVTIARAL--R---NK---NTFEWKNALRELTRPSSSSFSGVPAEA 209 (1314)
Q Consensus 143 ~~~~~~~-~~~~~~~~~~~i~~~~----~g~Plai~~~~~~l--~---~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~ 209 (1314)
.++.... ...-.+++++.|++.. |..+.|+.++-... + +. +.+..+.+.+....
T Consensus 218 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~------------- 284 (394)
T PRK00411 218 DRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI------------- 284 (394)
T ss_pred HHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH-------------
Confidence 8873211 1112233444555544 55777777764322 1 11 45555555554311
Q ss_pred hhheeecccccCchhhHHHHHhhcccccc---CCcCHHHHHHhh--cccccccCcCCHHHHHHHHHHHHHHHhhcccccc
Q 042307 210 YKSIELSYNHLEGEELKSTFLLCCLMDFI---ENPSVLYLLSYG--MGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLD 284 (1314)
Q Consensus 210 ~~~l~~s~~~L~~~~~~~~f~~~~~~~fp---~~~~i~~l~~~w--~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~ 284 (1314)
....-.+..|+.++ +.++.-++.. .. +...+.++.... ++... +.. ......+.+++.+|...+++..
T Consensus 285 -~~~~~~~~~L~~~~-k~~L~ai~~~-~~~~~~~~~~~~i~~~y~~l~~~~--~~~--~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 285 -VHLSEVLRTLPLHE-KLLLRAIVRL-LKKGGDEVTTGEVYEEYKELCEEL--GYE--PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred -HHHHHHHhcCCHHH-HHHHHHHHHH-HhcCCCcccHHHHHHHHHHHHHHc--CCC--cCcHHHHHHHHHHHHhcCCeEE
Confidence 12233567888873 4444333321 11 222333332211 01000 000 1123445668899999998863
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=1.2e-09 Score=109.80 Aligned_cols=106 Identities=27% Similarity=0.337 Sum_probs=52.5
Q ss_pred CCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeec
Q 042307 376 RLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLS 454 (1314)
Q Consensus 376 ~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 454 (1314)
-++++|+|++|+|.+..+-. +..|++|..|||++|.++.+ ..-.+|-+.+.|+|++|.|..+ ..+++|++|.+||++
T Consensus 305 L~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLS 382 (490)
T ss_pred hccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheecccc
Confidence 34455555555555544422 44555555555555554444 2223444455555555555544 235555555555555
Q ss_pred cCCCCCccch-hhhcCCCCCcEEEcCCCccc
Q 042307 455 SCYQLKAISS-NVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 455 ~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+| ++..+.. ..|++|+.|+++.+.+|.+.
T Consensus 383 ~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 383 SN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 54 3333321 12555666666666666554
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=3.6e-08 Score=115.43 Aligned_cols=176 Identities=28% Similarity=0.363 Sum_probs=122.9
Q ss_pred CCccEEEcccCCCcccCCCcCCC--CccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEc
Q 042307 331 KNCTAISLHNCKIGELVDGLECP--RLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCL 408 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L 408 (1314)
+.++.+++.+|.+.+++...... +|+.|++++|.+ ..+|..+ ..++.|+.|++++|.+..+|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 56777888888888887776443 788888887764 3443333 6777888888888888877777667778888888
Q ss_pred CCCcCCCccc-cCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccc
Q 042307 409 DNGVLGDVAV-IGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWET 487 (1314)
Q Consensus 409 ~~~~~~~~~~-~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (1314)
++|.+..++. ++.+.+|++|.+++|.+...+..++++.++..|.+..+ .+..++.. ++++.+++.|++++|.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceecccccccc---
Confidence 8888777633 35666688888888766666777777777777776665 44444444 677777888888777664
Q ss_pred ccCCcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 488 EGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
.+..++.+.+++.|+++++.+...+.
T Consensus 269 -----------~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 -----------SISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -----------ccccccccCccCEEeccCccccccch
Confidence 12226777778888887776655543
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=6.4e-09 Score=110.87 Aligned_cols=180 Identities=22% Similarity=0.252 Sum_probs=102.6
Q ss_pred cCCCccEEEcccCCCcccCCC---c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC--CCCcccccCcc
Q 042307 329 TLKNCTAISLHNCKIGELVDG---L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL--SLPSSLHLLVN 402 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~---~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~--~lp~~~~~l~~ 402 (1314)
.+.++|.|+|+.|-+.+...- + .+++|+.|+++.|..........=..+.+|+.|.|+.|+++ .+-.....+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 455667777777765443322 2 66677777777765432222221134566777777777666 23333445666
Q ss_pred CcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccc--hhhcCCCCCCEEeeccCCCCCccchhhh------cCCCC
Q 042307 403 LRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLP--REIGQLTRLRSLNLSSCYQLKAISSNVI------SNLSQ 472 (1314)
Q Consensus 403 L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~~~~~~l------~~l~~ 472 (1314)
|..|+|.+|....+ .....++.|+.|||++|++-.++ ..++.++.|+.|+++.| .+.++-.-+. ..+.+
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhccccc
Confidence 77777777642222 33445666777777777666554 34677777777777765 4444321111 34566
Q ss_pred CcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 473 LEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 473 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
|++|++..|.+.. ...+..+..+++|+.|.+.++.+.
T Consensus 303 L~~L~i~~N~I~~-----------w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 303 LEYLNISENNIRD-----------WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ceeeecccCcccc-----------ccccchhhccchhhhhhccccccc
Confidence 7777777776631 234455666666666666655543
No 41
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.57 E-value=3.8e-06 Score=97.13 Aligned_cols=264 Identities=16% Similarity=0.186 Sum_probs=141.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-CC---CEEEEEEeccCcCHHHHHHHHHHHh---CCCccc--cChhHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-LF---DEVVYADVSQTPDIKKIQGQIADKL---GLKFYE--ESESGRARKLCE 72 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~i~~~l---~~~~~~--~~~~~~~~~~~~ 72 (1314)
+.|+|++|+|||++++.++++..... .. -.++|+++....+...++..+++++ +...+. .+..+....+.+
T Consensus 43 i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (365)
T TIGR02928 43 VFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYK 122 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 68999999999999999998765321 11 2478899888778888999999988 333221 122334556666
Q ss_pred HHhc-CCeEEEEEeCCCCcc-c----ccccC-C--C--CCCCCceEEEEecccccccc---cc--C-CCccEEecCCCHH
Q 042307 73 RLRK-EKKILVILDNIWANL-D----LENVG-I--P--FGDRGCGVLMTARSQDVLSS---KM--D-CQNNFLVGALNES 135 (1314)
Q Consensus 73 ~l~~-~~~~LlvlD~v~~~~-~----~~~~~-~--~--~~~~~~~ilvTtr~~~~~~~---~~--~-~~~~~~l~~l~~~ 135 (1314)
.+.+ ++++++|||+++... . +..+. . . .......+|.+|+....... .. + ....+.+++++.+
T Consensus 123 ~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~ 202 (365)
T TIGR02928 123 ELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAE 202 (365)
T ss_pred HHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHH
Confidence 6653 568899999998762 1 22221 1 1 01123345555554432110 00 1 1246889999999
Q ss_pred HHHHHHHHHhCC----CCCCccHHHHHHHHHHHhCCcH-HHHHHHHHHH----h-cC---ChhHHHHHHHHhcCCCCCCC
Q 042307 136 EAWDLFKKLVGD----KIENNDLKAVAVDIAKACGGLP-IAIVTIARAL----R-NK---NTFEWKNALRELTRPSSSSF 202 (1314)
Q Consensus 136 ea~~l~~~~~~~----~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l----~-~~---~~~~w~~~~~~l~~~~~~~~ 202 (1314)
|..+++..++.. ..-+++.-+.+.+++....|-| .|+.++-... . +. +.+..+.+.+....
T Consensus 203 e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~------ 276 (365)
T TIGR02928 203 ELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK------ 276 (365)
T ss_pred HHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH------
Confidence 999999988731 1111222233445666666777 4444332211 1 11 44444444443311
Q ss_pred CCCchhhhhheeecccccCchhhHHHHHhhccccc--cCCcCHHHHHHhhc--ccccccCcCCHHHHHHHHHHHHHHHhh
Q 042307 203 SGVPAEAYKSIELSYNHLEGEELKSTFLLCCLMDF--IENPSVLYLLSYGM--GLGLFKGTHTMEEARDRALTLVDKLKN 278 (1314)
Q Consensus 203 ~~~~~~~~~~l~~s~~~L~~~~~~~~f~~~~~~~f--p~~~~i~~l~~~w~--~~~~~~~~~~~~~~~~~~~~~l~~L~~ 278 (1314)
....-.+..|+.+ .+.++..++.... ...+...++...+. ++.. + .......++.+++.+|..
T Consensus 277 --------~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~--~--~~~~~~~~~~~~l~~l~~ 343 (365)
T TIGR02928 277 --------DRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI--G--VDPLTQRRISDLLNELDM 343 (365)
T ss_pred --------HHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc--C--CCCCcHHHHHHHHHHHHh
Confidence 1223345677776 3444444332110 11222333333111 1110 0 011223556678899999
Q ss_pred cccccc
Q 042307 279 SCLLLD 284 (1314)
Q Consensus 279 ~sll~~ 284 (1314)
.|++..
T Consensus 344 ~gli~~ 349 (365)
T TIGR02928 344 LGLVEA 349 (365)
T ss_pred cCCeEE
Confidence 998864
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=7.2e-08 Score=112.88 Aligned_cols=173 Identities=28% Similarity=0.408 Sum_probs=136.2
Q ss_pred EEEcccCCC-cccCCCcCCCCccEEEeCCCCCCcccCchhhhCCC-cccEEEecCCcCCCCCcccccCccCcEEEcCCCc
Q 042307 335 AISLHNCKI-GELVDGLECPRLKFFHISPREGFIKIPDNFFTRLT-ELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 335 ~l~l~~~~l-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~-~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~ 412 (1314)
.+.+..+.+ .........+.++.|++.+|.. ..++... ..+. +|+.|++++|.+..+|..+..+++|+.|+++.|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i-~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccc-ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 467777776 4444444778899999988874 5566544 4553 8999999999999998889999999999999999
Q ss_pred CCCccc-cCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCC
Q 042307 413 LGDVAV-IGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQS 491 (1314)
Q Consensus 413 ~~~~~~-~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 491 (1314)
+..+.. .+.+..|+.|++++|.+..+|..++.+.+|++|.+++|. ....+.. +.++.++..|.+.+|.+.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------- 245 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------- 245 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee-------
Confidence 988744 448999999999999999999888888889999999874 3444444 788888888888777653
Q ss_pred cccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 492 SSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 492 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
..+..+..+++++.|+++++.+..++.
T Consensus 246 ------~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 246 ------DLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred ------eccchhccccccceecccccccccccc
Confidence 225677888889999999999888776
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=2.6e-07 Score=88.81 Aligned_cols=113 Identities=20% Similarity=0.332 Sum_probs=81.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc---CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-cChhHHHHHHHHHHhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK---LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-ESESGRARKLCERLRK 76 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~l~~ 76 (1314)
++.|+|.+|+|||+++.+++++..... .-..++|+++....+...+...+++.++..... .+.......+.+.+.+
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 478999999999999999999875310 123478999998889999999999999988766 3445556778888876
Q ss_pred CCeEEEEEeCCCCc-c--cccccCCCCCCCCceEEEEecc
Q 042307 77 EKKILVILDNIWAN-L--DLENVGIPFGDRGCGVLMTARS 113 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~-~--~~~~~~~~~~~~~~~ilvTtr~ 113 (1314)
.+..+||+|+++.. . .++.+.......+.+++++.++
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 77789999998765 2 2233322223567788887766
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.45 E-value=5.8e-06 Score=88.58 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=113.7
Q ss_pred EEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 3 GVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 3 ~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
.+||++|+||||||+-++...... | ..++-.. .+.++ +.+++. -.+....+++.+
T Consensus 52 Il~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdl-r~i~e~----------------a~~~~~~gr~ti 107 (436)
T COG2256 52 ILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDL-REIIEE----------------ARKNRLLGRRTI 107 (436)
T ss_pred EEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHH-HHHHHH----------------HHHHHhcCCceE
Confidence 579999999999999999876522 3 2233222 22222 222211 111222378999
Q ss_pred EEEeCCCCcc--cccccCCCCCCCCceEEE--Eecccccccc--ccCCCccEEecCCCHHHHHHHHHHHhCCC------C
Q 042307 82 VILDNIWANL--DLENVGIPFGDRGCGVLM--TARSQDVLSS--KMDCQNNFLVGALNESEAWDLFKKLVGDK------I 149 (1314)
Q Consensus 82 lvlD~v~~~~--~~~~~~~~~~~~~~~ilv--Ttr~~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~~~~~~------~ 149 (1314)
|++|.|..-. +-+.+ .|.-..|.-|+| ||.++...-. ...-..++++++|+.++-.+++.+.+-+. .
T Consensus 108 LflDEIHRfnK~QQD~l-Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~ 186 (436)
T COG2256 108 LFLDEIHRFNKAQQDAL-LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQ 186 (436)
T ss_pred EEEehhhhcChhhhhhh-hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcc
Confidence 9999997552 33333 677788877776 4555442211 23456789999999999999999855111 1
Q ss_pred CCccHHHHHHHHHHHhCCcHH-HH---HHHHHHHhcC---ChhHHHHHHHHhcCCCCCCCCCCchhhhhheeecccccCc
Q 042307 150 ENNDLKAVAVDIAKACGGLPI-AI---VTIARALRNK---NTFEWKNALRELTRPSSSSFSGVPAEAYKSIELSYNHLEG 222 (1314)
Q Consensus 150 ~~~~~~~~~~~i~~~~~g~Pl-ai---~~~~~~l~~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~ 222 (1314)
...-.+++...+++.++|=.. |+ .+++..-+.. ..+..++.+++-.. ....-.+....+.++|..|.+.-++
T Consensus 187 ~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 187 IIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSA-RFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred cccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhh-ccCCCcchHHHHHHHHHHhhccCCc
Confidence 111235567788888887543 22 2223322222 23344444433211 0111223345688899999999888
Q ss_pred hh
Q 042307 223 EE 224 (1314)
Q Consensus 223 ~~ 224 (1314)
+.
T Consensus 266 dA 267 (436)
T COG2256 266 DA 267 (436)
T ss_pred CH
Confidence 73
No 45
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.42 E-value=8.1e-07 Score=95.87 Aligned_cols=172 Identities=22% Similarity=0.368 Sum_probs=89.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHH---------HHHHHhCCCcc-----------c
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQG---------QIADKLGLKFY-----------E 60 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~i~~~l~~~~~-----------~ 60 (1314)
.|.|+|+.|+|||+|++++.+..+... + .++|+............. .+.+.++...+ .
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 378999999999999999999885321 1 355555544332221111 11222211111 1
Q ss_pred cChhHHHHHHHHHHhc-CCeEEEEEeCCCCcc-ccc---cc----C--CC--CCCCCceEEEEecccccccc-------c
Q 042307 61 ESESGRARKLCERLRK-EKKILVILDNIWANL-DLE---NV----G--IP--FGDRGCGVLMTARSQDVLSS-------K 120 (1314)
Q Consensus 61 ~~~~~~~~~~~~~l~~-~~~~LlvlD~v~~~~-~~~---~~----~--~~--~~~~~~~ilvTtr~~~~~~~-------~ 120 (1314)
.........+.+.+.+ +++++||+||++... ... .+ . .. .......+++++....+... .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~ 179 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPL 179 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcc
Confidence 1223345566666654 356999999987665 111 11 0 00 11233344444443322210 2
Q ss_pred cCCCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 121 MDCQNNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 121 ~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
.+....+.+++|+.+++++++...+.....-+..++..++|++.+||+|..|..
T Consensus 180 ~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 180 FGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 333445999999999999999998743311112456679999999999998864
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.41 E-value=1.3e-06 Score=92.29 Aligned_cols=147 Identities=17% Similarity=0.171 Sum_probs=91.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+|||+||+.+++....+ ...+.|+++...... . ..+.+.+ .+.-+
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~~---~--------------------~~~~~~~--~~~dl 94 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQYF---S--------------------PAVLENL--EQQDL 94 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhhh---h--------------------HHHHhhc--ccCCE
Confidence 5799999999999999999997643 335778876421000 0 0112222 23458
Q ss_pred EEEeCCCCc---ccccc-cC---CCCCCCCceEEEEeccc----------cccccccCCCccEEecCCCHHHHHHHHHHH
Q 042307 82 VILDNIWAN---LDLEN-VG---IPFGDRGCGVLMTARSQ----------DVLSSKMDCQNNFLVGALNESEAWDLFKKL 144 (1314)
Q Consensus 82 lvlD~v~~~---~~~~~-~~---~~~~~~~~~ilvTtr~~----------~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 144 (1314)
+|+||++.. ..|+. +. ......|..++|+|.+. .+.. ++.....+++++++.++.++++.+.
T Consensus 95 LilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 95 VCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 999999864 23331 10 11112455665554443 2222 3344567899999999999999988
Q ss_pred hCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHH
Q 042307 145 VGDKIENNDLKAVAVDIAKACGGLPIAIVTIAR 177 (1314)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 177 (1314)
+.... -.-.+++.+-|++++.|-.-++..+-.
T Consensus 174 a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 174 AYQRG-IELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 84322 223467788999999887665554433
No 47
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.35 E-value=1e-06 Score=95.09 Aligned_cols=286 Identities=23% Similarity=0.251 Sum_probs=181.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|+++|.|||||||++-++.. .+ ..+-+++.++++..-.+...+...+...++...... ......+...+. .++.+
T Consensus 17 vtL~g~ggvgkttl~~~~a~-~~-~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~-~rr~l 91 (414)
T COG3903 17 VTLTGAGGVGKTTLALQAAH-AA-SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG-DRRAL 91 (414)
T ss_pred eeeeccCccceehhhhhhHh-Hh-hhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh-hhhHH
Confidence 78999999999999999999 33 223366889999998898888888888888775421 222334444444 78999
Q ss_pred EEEeCCCCccccc-cc--CCCCCCCCceEEEEeccccccccccCCCccEEecCCCHH-HHHHHHHHHhC----CCCCCcc
Q 042307 82 VILDNIWANLDLE-NV--GIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLVGALNES-EAWDLFKKLVG----DKIENND 153 (1314)
Q Consensus 82 lvlD~v~~~~~~~-~~--~~~~~~~~~~ilvTtr~~~~~~~~~~~~~~~~l~~l~~~-ea~~l~~~~~~----~~~~~~~ 153 (1314)
+|+||-....+-. .. .+......-.|+.|+|....+ .......++.++.- ++.++|...+. .-.-...
T Consensus 92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~----~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV----AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc----cccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 9999976552211 10 112233455788888887533 34455666666644 89999887772 1112233
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHhcCChhHHHHHHHH----hcCCCCCCCCCCchhhhhheeecccccCchhhHHHH
Q 042307 154 LKAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALRE----LTRPSSSSFSGVPAEAYKSIELSYNHLEGEELKSTF 229 (1314)
Q Consensus 154 ~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~----l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~f 229 (1314)
....+.+|.++..|.|++|..+++..+....++-.+.+.. +... ...-.-...+....+.+||.-|..- .+..|
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~~~~ 245 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ERALF 245 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HHHHh
Confidence 4566889999999999999999998888755554444432 2221 1111112235678899999999998 59999
Q ss_pred HhhccccccCCcCHHHHHHhhcccccccCcCCHHHHHHHHHHHHHHHhhccccccCC--CCceeeechhHHHHHHHHhcc
Q 042307 230 LLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLDGP--ESEYFSVHDVVRDVAISIASR 307 (1314)
Q Consensus 230 ~~~~~~~fp~~~~i~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~--~~~~~~mH~lv~~~~~~~~~~ 307 (1314)
..++. |...+... ...|.+.|-. ....+..+...+..+++++++...+ ....|..-+-+|.|+..+..+
T Consensus 246 ~rLa~--~~g~f~~~--l~~~~a~g~~-----~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 246 GRLAV--FVGGFDLG--LALAVAAGAD-----VDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred cchhh--hhhhhccc--HHHHHhcCCc-----cccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999 55666554 1222222211 1112223344566777888774432 233566666777776666554
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.34 E-value=2.5e-05 Score=87.56 Aligned_cols=164 Identities=14% Similarity=0.068 Sum_probs=92.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCc----c--ccChhHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKF----Y--EESESGRARKLCERLR 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~--~~~~~~~~~~~~~~l~ 75 (1314)
+.++|++|+|||++|+.+++....+ + ..+.......... ....+..++... + +.-.......+...+.
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~ 106 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAME 106 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHh
Confidence 6899999999999999999987632 2 2222221111111 222233332211 0 0001112223333332
Q ss_pred cCCeEEEEEeCCCCcccccccCCCCCCCCceEEEEecccccccc-ccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccH
Q 042307 76 KEKKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSS-KMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDL 154 (1314)
Q Consensus 76 ~~~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~ 154 (1314)
+.+..+|+|+......+... . .+.+-|..||+...+... .-+....+.+++++.+|..+++.+.++.... .-.
T Consensus 107 -~~~~~~v~~~~~~~~~~~~~---~-~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~ 180 (305)
T TIGR00635 107 -DFRLDIVIGKGPSARSVRLD---L-PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIE 180 (305)
T ss_pred -hhheeeeeccCccccceeec---C-CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcC
Confidence 45556677765544443322 1 124456667776554432 1123456789999999999999988853222 233
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHH
Q 042307 155 KAVAVDIAKACGGLPIAIVTIAR 177 (1314)
Q Consensus 155 ~~~~~~i~~~~~g~Plai~~~~~ 177 (1314)
.+.+..|++.++|.|..+..++.
T Consensus 181 ~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 181 PEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHHHHHHHhCCCcchHHHHHH
Confidence 56778999999999976554444
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.6e-07 Score=100.43 Aligned_cols=155 Identities=20% Similarity=0.276 Sum_probs=118.1
Q ss_pred cCCCccEEEcccCCCcccCCCc---CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC-CCCcccccCccCc
Q 042307 329 TLKNCTAISLHNCKIGELVDGL---ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL-SLPSSLHLLVNLR 404 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~-~lp~~~~~l~~L~ 404 (1314)
-+++++.|+++.|++....... .+++|+.|.+++|.+...--..+...++.|.+|+|.+|... .-..+...+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 3678899999999986544432 78899999999998876655566688999999999999532 2233455677899
Q ss_pred EEEcCCCcCCCc---cccCCCCCCCEEEccCccCccc--chh-----hcCCCCCCEEeeccCCCCCccch-hhhcCCCCC
Q 042307 405 TLCLDNGVLGDV---AVIGELKQLEILSFQGSNIEQL--PRE-----IGQLTRLRSLNLSSCYQLKAISS-NVISNLSQL 473 (1314)
Q Consensus 405 ~L~L~~~~~~~~---~~~~~L~~L~~L~L~~~~i~~l--p~~-----i~~L~~L~~L~L~~~~~l~~~~~-~~l~~l~~L 473 (1314)
.|+|++|.+.+. ...+.++.|+.|+++.|++.++ |+. ...+++|++|++..| .+.+.+. ..+..+.+|
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENL 328 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchh
Confidence 999999997654 6788999999999999999844 543 356899999999998 5554443 115567788
Q ss_pred cEEEcCCCccc
Q 042307 474 EELYLGDTFIQ 484 (1314)
Q Consensus 474 ~~L~l~~~~~~ 484 (1314)
++|.+..|.+.
T Consensus 329 k~l~~~~n~ln 339 (505)
T KOG3207|consen 329 KHLRITLNYLN 339 (505)
T ss_pred hhhhccccccc
Confidence 88887777765
No 50
>PF13173 AAA_14: AAA domain
Probab=98.30 E-value=7.7e-07 Score=84.40 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=75.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
++.|.|+.|+||||++++++.+.. ....++|+++.+.........+ ..+.+.+. ..+++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~-~~~~~~ 63 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLEL-IKPGKK 63 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHh-hccCCc
Confidence 589999999999999999998875 2355888887765432111000 11122222 224778
Q ss_pred EEEEeCCCCcccccccCCCCC--CCCceEEEEecccccccc-----ccCCCccEEecCCCHHH
Q 042307 81 LVILDNIWANLDLENVGIPFG--DRGCGVLMTARSQDVLSS-----KMDCQNNFLVGALNESE 136 (1314)
Q Consensus 81 LlvlD~v~~~~~~~~~~~~~~--~~~~~ilvTtr~~~~~~~-----~~~~~~~~~l~~l~~~e 136 (1314)
++++|+|....+|........ .+..+|++|+........ ..+....++|.+|+..|
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 899999998877765522222 235799999887665421 22334578899999876
No 51
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.28 E-value=7.9e-05 Score=83.95 Aligned_cols=247 Identities=13% Similarity=0.036 Sum_probs=124.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCc----cccC--hhHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKF----YEES--ESGRARKLCERLR 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~--~~~~~~~~~~~l~ 75 (1314)
+.|+|++|+|||++|+.+++..... +.++..... .....+..++..++... ++.. .....+.+...+
T Consensus 54 ~ll~GppG~GKT~la~~ia~~l~~~-----~~~~~~~~~-~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~- 126 (328)
T PRK00080 54 VLLYGPPGLGKTTLANIIANEMGVN-----IRITSGPAL-EKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAM- 126 (328)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCC-----eEEEecccc-cChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHH-
Confidence 6799999999999999999987632 222322211 11122233333332211 0000 011112222222
Q ss_pred cCCeEEEEEeCCCCcccccccCCCCCCCCceEEEEecccccccc-ccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccH
Q 042307 76 KEKKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSS-KMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDL 154 (1314)
Q Consensus 76 ~~~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~ 154 (1314)
+..+..+|+|+......+... . .+.+-|..|+|...+... .-+....+++++++.++..+++.+.++.... .-.
T Consensus 127 e~~~~~~~l~~~~~~~~~~~~-l---~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~ 201 (328)
T PRK00080 127 EDFRLDIMIGKGPAARSIRLD-L---PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EID 201 (328)
T ss_pred HhcceeeeeccCccccceeec-C---CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcC
Confidence 244555666654443222211 1 123445566665544431 1122356889999999999999988864322 233
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCCchhhhhheeecccccCchhhHHHHH-hhc
Q 042307 155 KAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALRELTRPSSSSFSGVPAEAYKSIELSYNHLEGEELKSTFL-LCC 233 (1314)
Q Consensus 155 ~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~f~-~~~ 233 (1314)
.+.+..|++.|+|.|..+..+...+. .|.... .. ..-...........+...+..|++.. +..+. ...
T Consensus 202 ~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~--~~I~~~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~ 270 (328)
T PRK00080 202 EEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GD--GVITKEIADKALDMLGVDELGLDEMD-RKYLRTIIE 270 (328)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CC--CCCCHHHHHHHHHHhCCCcCCCCHHH-HHHHHHHHH
Confidence 56788999999999964444433221 111110 00 00000111223345667777888774 55554 555
Q ss_pred cccccC-CcCHHHHHHhhcccccccCcCCHHHHHHHHHHHHH-HHhhccccccC
Q 042307 234 LMDFIE-NPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVD-KLKNSCLLLDG 285 (1314)
Q Consensus 234 ~~~fp~-~~~i~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~-~L~~~sll~~~ 285 (1314)
. |+. ...++.+.... |. +. +. .++.++ .|++.+|++..
T Consensus 271 ~--~~~~~~~~~~~a~~l---g~--~~---~~----~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 271 K--FGGGPVGLDTLAAAL---GE--ER---DT----IEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred H--cCCCceeHHHHHHHH---CC--Cc---ch----HHHHhhHHHHHcCCcccC
Confidence 5 333 34444333221 11 11 11 222355 78899999644
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=2.1e-06 Score=104.80 Aligned_cols=104 Identities=21% Similarity=0.359 Sum_probs=79.6
Q ss_pred cccEEEecCCcCC-CCCcccccCccCcEEEcCCCcCCC-c-cccCCCCCCCEEEccCccCc-ccchhhcCCCCCCEEeec
Q 042307 379 ELRVLDFTDMHLL-SLPSSLHLLVNLRTLCLDNGVLGD-V-AVIGELKQLEILSFQGSNIE-QLPREIGQLTRLRSLNLS 454 (1314)
Q Consensus 379 ~L~~L~Ls~n~~~-~lp~~~~~l~~L~~L~L~~~~~~~-~-~~~~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~ 454 (1314)
.++.|+|++|.+. .+|..++++++|++|+|++|.+.. + ..++++++|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888877 567788888888888888888763 3 56888888888888888887 678888888888888888
Q ss_pred cCCCCCccchhhhcC-CCCCcEEEcCCCcc
Q 042307 455 SCYQLKAISSNVISN-LSQLEELYLGDTFI 483 (1314)
Q Consensus 455 ~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~ 483 (1314)
+|.....+|.. ++. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 88655677776 544 35667788877754
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=8.7e-07 Score=71.01 Aligned_cols=58 Identities=33% Similarity=0.524 Sum_probs=34.9
Q ss_pred CccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCc
Q 042307 354 RLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~ 412 (1314)
+|++|++++|. ...+|.+.|.++++|++|++++|.+..+ |..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666654 3455555566666666666666666665 3356666666666666554
No 54
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.9e-05 Score=85.11 Aligned_cols=173 Identities=24% Similarity=0.317 Sum_probs=112.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCC-CccccChhHHHHHHHHHHhc-CCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGL-KFYEESESGRARKLCERLRK-EKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~l~~-~~~ 79 (1314)
+.|+|..|+|||+.++.++++.+....-..+++|++....+..+++..|++.++. ...+....+....+.+.+.+ ++.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence 6789999999999999999998864332338999999999999999999999963 33334555666777777775 678
Q ss_pred EEEEEeCCCCccccc--ccC--CCCCC-CCceEEE--Eecccccccc-------ccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 80 ILVILDNIWANLDLE--NVG--IPFGD-RGCGVLM--TARSQDVLSS-------KMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 80 ~LlvlD~v~~~~~~~--~~~--~~~~~-~~~~ilv--Ttr~~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
+++|+|+++....-. -++ ..... ..++|++ .+.+...... .++.. .+..++.+.+|-.+.+..++
T Consensus 125 ~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 125 VIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERV 203 (366)
T ss_pred EEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHH
Confidence 999999998663221 111 11111 2455443 3333321110 22333 37889999999999999888
Q ss_pred C-----CCCCCccHHHHHHHHHHHhCCcHHHHHHH
Q 042307 146 G-----DKIENNDLKAVAVDIAKACGGLPIAIVTI 175 (1314)
Q Consensus 146 ~-----~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 175 (1314)
. ...++...+-+|...++..|-.-.||.++
T Consensus 204 ~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 204 EEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2 22233333334444444444555666665
No 55
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=8e-07 Score=71.25 Aligned_cols=58 Identities=29% Similarity=0.491 Sum_probs=35.2
Q ss_pred CCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCc
Q 042307 424 QLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTF 482 (1314)
Q Consensus 424 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (1314)
+|++|++++|+++.+|. .+..+++|++|++++| .+..+++..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666653 4556666666666654 5566665556666666666666654
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=2e-07 Score=108.78 Aligned_cols=107 Identities=30% Similarity=0.423 Sum_probs=68.0
Q ss_pred hCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeec
Q 042307 375 TRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLS 454 (1314)
Q Consensus 375 ~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~ 454 (1314)
..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++++|.|..++. +..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 556666666666666666654466666777777777777666666666667777777776665533 4456667777777
Q ss_pred cCCCCCccch-hhhcCCCCCcEEEcCCCccc
Q 042307 455 SCYQLKAISS-NVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 455 ~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+| .+..+.. . +..+.+++.+++++|.+.
T Consensus 171 ~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 65 4444444 1 355666677777666553
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.18 E-value=7.3e-06 Score=87.49 Aligned_cols=149 Identities=16% Similarity=0.190 Sum_probs=90.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.++++.... ...++|++++.-.... . .+...+. +.-+
T Consensus 41 lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~~---~--------------------~~~~~~~--~~~l 93 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQAD---P--------------------EVLEGLE--QADL 93 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHhH---H--------------------HHHhhcc--cCCE
Confidence 7899999999999999999887633 3357778765432110 0 1111122 2348
Q ss_pred EEEeCCCCcc---cc-cccCCCC---CCCCceEEEEeccccccc-----c---ccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWANL---DL-ENVGIPF---GDRGCGVLMTARSQDVLS-----S---KMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~~---~~-~~~~~~~---~~~~~~ilvTtr~~~~~~-----~---~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
+|+||++... .| +.+...+ ...+.++|+||+...... . .......+++++++.++...++...+.
T Consensus 94 LvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 94 VCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 9999998653 22 2221111 123457888887532110 0 122245789999999999999887652
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHHHHHHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAIVTIARA 178 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 178 (1314)
... ..-.++..+.+++.++|.|..+..+...
T Consensus 174 ~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 174 RRG-LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HcC-CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 111 1223566788888999999877665443
No 58
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=3.7e-06 Score=102.77 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=72.3
Q ss_pred cCcEEEcCCCcCCC--ccccCCCCCCCEEEccCccCc-ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEc
Q 042307 402 NLRTLCLDNGVLGD--VAVIGELKQLEILSFQGSNIE-QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYL 478 (1314)
Q Consensus 402 ~L~~L~L~~~~~~~--~~~~~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l 478 (1314)
.++.|+|++|.+.. +..++++++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 36677777777654 266777888888888888776 67777888888888888877444456655 777888888888
Q ss_pred CCCccccccccCCcccccccCcccccCC-CCCcEEEeEecC
Q 042307 479 GDTFIQWETEGQSSSERSRASLHELKHL-SSLNTLEIQVRD 518 (1314)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 518 (1314)
++|.+. +..+..+..+ .++..+++.+|.
T Consensus 498 s~N~l~------------g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLS------------GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccc------------ccCChHHhhccccCceEEecCCc
Confidence 877765 4455555442 355667777664
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=3.2e-08 Score=111.79 Aligned_cols=180 Identities=22% Similarity=0.242 Sum_probs=127.8
Q ss_pred cccCCCccEEEcccCCCcccCCCcCC-CCccEEEeCCC---------CCCcccCchhhhCCCcccEEEecCCcCCCCCcc
Q 042307 327 RDTLKNCTAISLHNCKIGELVDGLEC-PRLKFFHISPR---------EGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSS 396 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~~~~-~~L~~L~l~~~---------~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~ 396 (1314)
--.++++|+|-+.++.++.+.....+ ..|..|...+- .-.+.+-.. ..-..|.+.+.++|.+..+-.+
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS--PVWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc--hhhhhHhhhhcchhhHHhHHHH
Confidence 34578899999999988765432211 22333322210 000111111 1234688889999999888888
Q ss_pred cccCccCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcE
Q 042307 397 LHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEE 475 (1314)
Q Consensus 397 ~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~ 475 (1314)
+.-++.|+.|+|++|.+.....+..|.+|++|||++|.+..+|.- ...+ +|+.|++++| .++.+.. +.+|++|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g--ie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG--IENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh--HHhhhhhhc
Confidence 888999999999999999999999999999999999999988852 2233 4999999997 6777655 889999999
Q ss_pred EEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCC
Q 042307 476 LYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLP 523 (1314)
Q Consensus 476 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 523 (1314)
||+++|.+.. ...+.-+..|..|+.|++.+|.+-.-|
T Consensus 259 LDlsyNll~~-----------hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 259 LDLSYNLLSE-----------HSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cchhHhhhhc-----------chhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999998751 233444556677888999988765443
No 60
>PRK09087 hypothetical protein; Validated
Probab=98.16 E-value=1.7e-05 Score=83.01 Aligned_cols=135 Identities=19% Similarity=0.152 Sum_probs=85.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+|||+|++.++.... +.|++.. .....+.. .+. . -+
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~--------------------~~~-~--~~ 90 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN--------------------AAA-E--GP 90 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH--------------------hhh-c--Ce
Confidence 78999999999999998886542 3355532 11111111 111 1 27
Q ss_pred EEEeCCCCc----ccccccCCCCCCCCceEEEEecccc---------ccccccCCCccEEecCCCHHHHHHHHHHHhCCC
Q 042307 82 VILDNIWAN----LDLENVGIPFGDRGCGVLMTARSQD---------VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDK 148 (1314)
Q Consensus 82 lvlD~v~~~----~~~~~~~~~~~~~~~~ilvTtr~~~---------~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~ 148 (1314)
+++||++.. +.+.++.......|..+|+|++... ... ++.....+++++++.++-.+++.+++...
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 888999643 1222221111235778999987422 111 34455789999999999999999988532
Q ss_pred CCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 149 IENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
. -.-.+++.+.|++++.|..-++..
T Consensus 170 ~-~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 170 Q-LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred C-CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 2 223467788999999988766654
No 61
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.15 E-value=1.3e-05 Score=83.66 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=96.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|..|+|||.|.+.+++.......-..|+|+++ .+....+...+.. .....+...+. .--+
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~--------~~~~~~~~~~~--~~Dl 100 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD--------GEIEEFKDRLR--SADL 100 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT--------TSHHHHHHHHC--TSSE
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc--------ccchhhhhhhh--cCCE
Confidence 689999999999999999998775333345888873 3444455554432 12234555553 5668
Q ss_pred EEEeCCCCccc---ccc----cCCCCCCCCceEEEEecccccccc--------ccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWANLD---LEN----VGIPFGDRGCGVLMTARSQDVLSS--------KMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~~~---~~~----~~~~~~~~~~~ilvTtr~~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
+++||++.... |.. +.......|.++|+|++.....-. ++...-.+++++.+.++..+++.+.+.
T Consensus 101 L~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 101 LIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp EEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred EEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 89999976522 211 111112356789999965431110 233455799999999999999999884
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHHHHHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAIVTIAR 177 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 177 (1314)
.... .-.+++++-|++++.+..-.+..+-.
T Consensus 181 ~~~~-~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 181 ERGI-ELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HTT---S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3222 23467788888888877766655433
No 62
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.14 E-value=5e-05 Score=89.98 Aligned_cols=176 Identities=16% Similarity=0.194 Sum_probs=105.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc---cCC--CEEEEEEeccCcCHHHHHHHHHHHhCCCcccc--ChhHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND---KLF--DEVVYADVSQTPDIKKIQGQIADKLGLKFYEE--SESGRARKLCERL 74 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~---~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l 74 (1314)
+.|+|++|+|||++++.++++.... ... -.+++|++..-.+...++..|.+++....+.. .....+..++..+
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5799999999999999999876431 111 23788998887888899999999884433221 2233455555555
Q ss_pred hc--CCeEEEEEeCCCCccc-----cccc-CCCCCCCCceEEE--Eecccccccc-------ccCCCccEEecCCCHHHH
Q 042307 75 RK--EKKILVILDNIWANLD-----LENV-GIPFGDRGCGVLM--TARSQDVLSS-------KMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 75 ~~--~~~~LlvlD~v~~~~~-----~~~~-~~~~~~~~~~ilv--Ttr~~~~~~~-------~~~~~~~~~l~~l~~~ea 137 (1314)
.+ ....+||||+|+.... +-.+ ..+ ...+++|+| +|.+...... .++ ...+..++++.++.
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~-~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL 941 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP-TKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEI 941 (1164)
T ss_pred hcccccceEEEeehHhhhCccHHHHHHHHHHHh-hccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHH
Confidence 32 2346899999986521 1111 111 123455444 3443222211 111 23466799999999
Q ss_pred HHHHHHHhCC---CCCCccHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042307 138 WDLFKKLVGD---KIENNDLKAVAVDIAKACGGLPIAIVTIARAL 179 (1314)
Q Consensus 138 ~~l~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 179 (1314)
.+++..++.. ..++...+-+|+.+++.-|..-.||.++-...
T Consensus 942 ~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 942 EKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 9999998852 12223333334444444455667777665444
No 63
>PRK08727 hypothetical protein; Validated
Probab=98.09 E-value=1.9e-05 Score=83.64 Aligned_cols=143 Identities=17% Similarity=0.105 Sum_probs=88.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|.+|+|||.|++.+++....+ ...+.|+++.+. ...+ ....+.+ ...-+
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~~------~~~~-----------------~~~~~~l--~~~dl 96 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQAA------AGRL-----------------RDALEAL--EGRSL 96 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHHh------hhhH-----------------HHHHHHH--hcCCE
Confidence 7899999999999999999887643 235778874331 1111 1122233 24458
Q ss_pred EEEeCCCCcc---cccccCCC----CCCCCceEEEEeccccccc-----c---ccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWANL---DLENVGIP----FGDRGCGVLMTARSQDVLS-----S---KMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~~---~~~~~~~~----~~~~~~~ilvTtr~~~~~~-----~---~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
+|+||++... .+....+. ....+..+|+|++...-.. . ++.....+++++++.++..+++.+++.
T Consensus 97 LiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 97 VALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 9999997542 12111011 1124667999998633111 0 222345789999999999999998773
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAI 172 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai 172 (1314)
... -.-.+++...|+++++|-.-.+
T Consensus 177 ~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 177 RRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 221 2233567788999998765443
No 64
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=3.7e-05 Score=89.32 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=100.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|..|+|||+|++.+++.......-..++|++. .+....+...++.. ......+.+.+. ..-+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~dv 209 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT------HKEIEQFKNEIC--QNDV 209 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh------hhHHHHHHHHhc--cCCE
Confidence 679999999999999999997654333345777764 34555555555321 022334444443 4458
Q ss_pred EEEeCCCCcc---c-ccccCC---CCCCCCceEEEEecccc--c-------cccccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 82 VILDNIWANL---D-LENVGI---PFGDRGCGVLMTARSQD--V-------LSSKMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 82 lvlD~v~~~~---~-~~~~~~---~~~~~~~~ilvTtr~~~--~-------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
||+||+.... . .+.+.. .....|..||+|+.... . .. ++...-.+.+++++.++..+++.+++
T Consensus 210 LiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S-R~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 210 LIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT-RFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH-HHhCCceeccCCcCHHHHHHHHHHHH
Confidence 8899996542 1 122211 11234557888866432 1 11 23334567799999999999999888
Q ss_pred CCCCC-CccHHHHHHHHHHHhCCcHHHHHHHHH
Q 042307 146 GDKIE-NNDLKAVAVDIAKACGGLPIAIVTIAR 177 (1314)
Q Consensus 146 ~~~~~-~~~~~~~~~~i~~~~~g~Plai~~~~~ 177 (1314)
..... ..-.++++..|++.++|.|..+.-+..
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 43211 134467889999999999977665543
No 65
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.03 E-value=1.4e-05 Score=84.07 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=59.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC--cCHHHHHHHH-----HHHhCCCccccC-hhHHH-HHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT--PDIKKIQGQI-----ADKLGLKFYEES-ESGRA-RKLCE 72 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~~-~~~~~-~~~~~ 72 (1314)
++|.|++|+|||||++++++....+ +|+.++|+.+... .++.++++.+ +..++....... -.... .....
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999988754 8899999987665 6889999998 333332111000 00011 11222
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 042307 73 RLRKEKKILVILDNIWAN 90 (1314)
Q Consensus 73 ~l~~~~~~LlvlD~v~~~ 90 (1314)
....++++++++|++...
T Consensus 98 ~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 98 LVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHCCCCEEEEEECHHHh
Confidence 223479999999998654
No 66
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.99 E-value=1.8e-05 Score=86.47 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=60.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc--CHHHHHHHHHHHhCCCccccChhHHH------HHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP--DIKKIQGQIADKLGLKFYEESESGRA------RKLCER 73 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~------~~~~~~ 73 (1314)
+.|+|++|+||||||+++++....+ +|+.++||.+.++. .+.++++.+...+-....+.....+. ...-++
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998854 89999999988776 77778877763221111111111111 122222
Q ss_pred H-hcCCeEEEEEeCCCCc
Q 042307 74 L-RKEKKILVILDNIWAN 90 (1314)
Q Consensus 74 l-~~~~~~LlvlD~v~~~ 90 (1314)
+ ..+++++|++|++...
T Consensus 251 ~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 251 LVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHcCCCEEEEEEChHHH
Confidence 2 2479999999998644
No 67
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.98 E-value=5.1e-05 Score=88.23 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=86.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+||||+|+.+++..... | +.++.... .... .+.+.+ ........+++.+
T Consensus 39 ilL~GppGtGKTtLA~~ia~~~~~~--~---~~l~a~~~-~~~~-ir~ii~----------------~~~~~~~~g~~~v 95 (413)
T PRK13342 39 MILWGPPGTGKTTLARIIAGATDAP--F---EALSAVTS-GVKD-LREVIE----------------EARQRRSAGRRTI 95 (413)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--E---EEEecccc-cHHH-HHHHHH----------------HHHHhhhcCCceE
Confidence 6789999999999999999876522 2 22222211 1111 111111 1111112357889
Q ss_pred EEEeCCCCcc--cccccCCCCCCCCceEEEE--ecccc--ccccccCCCccEEecCCCHHHHHHHHHHHhCCCC-CC-cc
Q 042307 82 VILDNIWANL--DLENVGIPFGDRGCGVLMT--ARSQD--VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKI-EN-ND 153 (1314)
Q Consensus 82 lvlD~v~~~~--~~~~~~~~~~~~~~~ilvT--tr~~~--~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~-~~-~~ 153 (1314)
+++|+++... +.+.+ .+.-..+..++|. |.+.. +..........+.+.+++.++..+++.+.+.... .. ..
T Consensus 96 L~IDEi~~l~~~~q~~L-L~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i 174 (413)
T PRK13342 96 LFIDEIHRFNKAQQDAL-LPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVEL 174 (413)
T ss_pred EEEechhhhCHHHHHHH-HHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999998652 22222 1222234455543 33322 1111122346789999999999999988763211 11 23
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHH
Q 042307 154 LKAVAVDIAKACGGLPIAIVTIA 176 (1314)
Q Consensus 154 ~~~~~~~i~~~~~g~Plai~~~~ 176 (1314)
.++..+.|++.++|.+..+..+.
T Consensus 175 ~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 175 DDEALDALARLANGDARRALNLL 197 (413)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHH
Confidence 35667889999999987554443
No 68
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.94 E-value=6.2e-05 Score=79.79 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=90.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|+.|+|||+||+.+++..... -..+.|+++...... ...+.+.+. ..-+
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~~-----------------------~~~~~~~~~--~~dl 100 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAWF-----------------------VPEVLEGME--QLSL 100 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhhh-----------------------hHHHHHHhh--hCCE
Confidence 6899999999999999999887633 345778877541110 011122222 1247
Q ss_pred EEEeCCCCc---ccccc----cCCCCCCCC-ceEEEEeccccccc-----c---ccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 82 VILDNIWAN---LDLEN----VGIPFGDRG-CGVLMTARSQDVLS-----S---KMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 82 lvlD~v~~~---~~~~~----~~~~~~~~~-~~ilvTtr~~~~~~-----~---~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
+++||+... ..|+. +.......| .++|+||+...... . +......+++++++.++-.+++.+++
T Consensus 101 liiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 101 VCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred EEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 899999754 22321 111111233 47999988653221 0 23334688999999999999998866
Q ss_pred CCCCCCccHHHHHHHHHHHhCCcHHHHHHHH
Q 042307 146 GDKIENNDLKAVAVDIAKACGGLPIAIVTIA 176 (1314)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 176 (1314)
.... -.-.+++++-|++++.|-.-++..+-
T Consensus 181 ~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 181 RLRG-FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHcC-CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 3221 23346778899999988765554443
No 69
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.93 E-value=0.00017 Score=75.66 Aligned_cols=148 Identities=17% Similarity=0.240 Sum_probs=95.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.+||++|+||||||+-++...+.. .+.||..+....-....+.|.++-. -...+ ..+|.+
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ife~aq--------------~~~~l-~krkTi 225 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRDIFEQAQ--------------NEKSL-TKRKTI 225 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHHHHHHHH--------------HHHhh-hcceeE
Confidence 5689999999999999999887633 2667777765443333444443310 11112 268999
Q ss_pred EEEeCCCCc--ccccccCCCCCCCCceEEE--Eecccccccc--ccCCCccEEecCCCHHHHHHHHHHHh---CC-----
Q 042307 82 VILDNIWAN--LDLENVGIPFGDRGCGVLM--TARSQDVLSS--KMDCQNNFLVGALNESEAWDLFKKLV---GD----- 147 (1314)
Q Consensus 82 lvlD~v~~~--~~~~~~~~~~~~~~~~ilv--Ttr~~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~~~---~~----- 147 (1314)
|++|.|..- .+-+.+ .|....|.-++| ||.+....-. .+....++-++.|+.++-..++.+.. ++
T Consensus 226 lFiDEiHRFNksQQD~f-LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~ 304 (554)
T KOG2028|consen 226 LFIDEIHRFNKSQQDTF-LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPT 304 (554)
T ss_pred EEeHHhhhhhhhhhhcc-cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccC
Confidence 999998654 333444 787888887776 5555442211 34556788999999999999988755 21
Q ss_pred -CCCC---ccHHHHHHHHHHHhCCcH
Q 042307 148 -KIEN---NDLKAVAVDIAKACGGLP 169 (1314)
Q Consensus 148 -~~~~---~~~~~~~~~i~~~~~g~P 169 (1314)
.... .-...+.+-++..|.|=.
T Consensus 305 ~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 305 DPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred CCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1111 123456677777787754
No 70
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.93 E-value=0.00011 Score=75.44 Aligned_cols=142 Identities=18% Similarity=0.155 Sum_probs=84.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc--------------------cCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND--------------------KLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE 61 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 61 (1314)
+.++|+.|+||||+|+.++...... .+.| ..++......
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~-------------------- 75 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQS-------------------- 75 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCc--------------------
Confidence 5789999999999999999887532 1122 2222211110
Q ss_pred ChhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEeccc-cccccccCCCccEEecCC
Q 042307 62 SESGRARKLCERLR----KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQ-DVLSSKMDCQNNFLVGAL 132 (1314)
Q Consensus 62 ~~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~-~~~~~~~~~~~~~~l~~l 132 (1314)
...+.+..+.+.+. .+.+-++|+|+++... ..+.+. +..+.+.+.+|++|++. .+..........+++.++
T Consensus 76 ~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~ 155 (188)
T TIGR00678 76 IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPL 155 (188)
T ss_pred CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCC
Confidence 11122222233222 1567789999987652 222221 11123455666666543 332211223468999999
Q ss_pred CHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 133 NESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 133 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
+.++..+.+.+. | . .++.+..|++.++|.|..
T Consensus 156 ~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 156 SEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred CHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 999999999887 3 2 246688999999998853
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=1.6e-05 Score=87.85 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=7.0
Q ss_pred cccEEEEecCCCccc
Q 042307 1009 NLVLVRIFECQRLKS 1023 (1314)
Q Consensus 1009 ~L~~L~l~~c~~L~~ 1023 (1314)
+|++|.+++|.+|+.
T Consensus 73 sLtsL~Lsnc~nLts 87 (426)
T PRK15386 73 ELTEITIENCNNLTT 87 (426)
T ss_pred CCcEEEccCCCCccc
Confidence 344444444444443
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00011 Score=85.75 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=86.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC-----------------------CEEEEEEeccCcCHHHHHHHHHHHhCCCc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF-----------------------DEVVYADVSQTPDIKKIQGQIADKLGLKF 58 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f-----------------------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 58 (1314)
+.++|+.|+||||+|+.+++........ ..++.++......
T Consensus 46 ~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~---------------- 109 (507)
T PRK06645 46 YLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTS---------------- 109 (507)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCC----------------
Confidence 5689999999999999999887532111 1123333222222
Q ss_pred cccChhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCC--CCCCCCceEE-EEeccccccccccCCCccEEe
Q 042307 59 YEESESGRARKLCERLR----KEKKILVILDNIWANL--DLENVGI--PFGDRGCGVL-MTARSQDVLSSKMDCQNNFLV 129 (1314)
Q Consensus 59 ~~~~~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~~--~~~~~~~~il-vTtr~~~~~~~~~~~~~~~~l 129 (1314)
.+.++.+..... .+++-++|+|+++... .++.+.. .-+...+.+| +||+...+..........+++
T Consensus 110 -----vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef 184 (507)
T PRK06645 110 -----VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDL 184 (507)
T ss_pred -----HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEc
Confidence 222222222222 1467789999998752 3333321 1123345554 455555544322233467899
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH
Q 042307 130 GALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 130 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
++++.++..+.+.+.+...... -..+.+..|++.++|.+.
T Consensus 185 ~~ls~~el~~~L~~i~~~egi~-ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 185 RRLSFEEIFKLLEYITKQENLK-TDIEALRIIAYKSEGSAR 224 (507)
T ss_pred cCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 9999999999999888432222 224567789999998764
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.5e-07 Score=91.16 Aligned_cols=78 Identities=26% Similarity=0.320 Sum_probs=37.0
Q ss_pred cccEEEecCCcCC--CCCcccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCc-cCccc--chhhcCCCCCCEE
Q 042307 379 ELRVLDFTDMHLL--SLPSSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGS-NIEQL--PREIGQLTRLRSL 451 (1314)
Q Consensus 379 ~L~~L~Ls~n~~~--~lp~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~-~i~~l--p~~i~~L~~L~~L 451 (1314)
.|++||||...|+ ++-.-++.+.+|+.|.+.++.+.++ ..+.+-.+|+.||++++ ++++. .--+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3566666665554 2222334455555555555555443 44444555555555554 34321 1123444444444
Q ss_pred eeccC
Q 042307 452 NLSSC 456 (1314)
Q Consensus 452 ~L~~~ 456 (1314)
+|+.|
T Consensus 266 NlsWc 270 (419)
T KOG2120|consen 266 NLSWC 270 (419)
T ss_pred CchHh
Confidence 44444
No 74
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.1e-05 Score=58.50 Aligned_cols=39 Identities=36% Similarity=0.564 Sum_probs=21.8
Q ss_pred cccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCcc
Q 042307 379 ELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDVA 417 (1314)
Q Consensus 379 ~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~~ 417 (1314)
+|++|++++|.|+.+|..++++++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666555566666666666665555443
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=5.4e-07 Score=91.22 Aligned_cols=173 Identities=21% Similarity=0.180 Sum_probs=127.1
Q ss_pred CCccEEEcccCCCc--ccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCC-cCCCC--CcccccCccCc
Q 042307 331 KNCTAISLHNCKIG--ELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDM-HLLSL--PSSLHLLVNLR 404 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n-~~~~l--p~~~~~l~~L~ 404 (1314)
.+++++||++..+. .+.... .|.+|+-|.+.++.....+-..+ .+-..|+.|+++.+ ++++. .--+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35788999987763 333333 88999999999998766665555 78889999999985 45532 33478999999
Q ss_pred EEEcCCCcCCCc------cccCCCCCCCEEEccCcc--Cc--ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCc
Q 042307 405 TLCLDNGVLGDV------AVIGELKQLEILSFQGSN--IE--QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLE 474 (1314)
Q Consensus 405 ~L~L~~~~~~~~------~~~~~L~~L~~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~ 474 (1314)
.|++++|.+... ..++ .+|..|+|+|+. +. .+..-..++++|.+|||+.|..++.--...+.+++.|+
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 999999986532 3343 478889999872 22 34344578999999999998777664344477899999
Q ss_pred EEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEec
Q 042307 475 ELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVR 517 (1314)
Q Consensus 475 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 517 (1314)
+|.++.|... ....+-++...+.|.+|++.+.
T Consensus 342 ~lSlsRCY~i-----------~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDI-----------IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCC-----------ChHHeeeeccCcceEEEEeccc
Confidence 9999998643 1234456788889999998864
No 76
>PRK05642 DNA replication initiation factor; Validated
Probab=97.89 E-value=7.1e-05 Score=79.20 Aligned_cols=150 Identities=17% Similarity=0.186 Sum_probs=91.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|..|+|||.|++.+++....+ -..++|++..+- ... ...+.+.+. +- -+
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~~------~~~-----------------~~~~~~~~~-~~-d~ 100 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAEL------LDR-----------------GPELLDNLE-QY-EL 100 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHHH------Hhh-----------------hHHHHHhhh-hC-CE
Confidence 6799999999999999999876533 245888885431 110 022333443 22 26
Q ss_pred EEEeCCCCc---ccccc-c---CCCCCCCCceEEEEecccccccc--------ccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWAN---LDLEN-V---GIPFGDRGCGVLMTARSQDVLSS--------KMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~---~~~~~-~---~~~~~~~~~~ilvTtr~~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
+|+||+... ..|+. + .......|.++|+|++...-... +......+++++++.++..+++.+++.
T Consensus 101 LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 101 VCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred EEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 788999643 23322 1 11112356788888875331110 122235688999999999999986663
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAIVTIARAL 179 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 179 (1314)
... -.-.+++.+-|++++.|-.-++..+-..+
T Consensus 181 ~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 181 RRG-LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 221 12235778889998888766555443333
No 77
>PRK04195 replication factor C large subunit; Provisional
Probab=97.89 E-value=0.00054 Score=81.48 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=91.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+||||+|+.++++.. ++ ++.+++++..+... ...++....... .+...++.+
T Consensus 42 lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~~i~~~~~~~--------------sl~~~~~kv 101 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IERVAGEAATSG--------------SLFGARRKL 101 (482)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHHHHHHhhccC--------------cccCCCCeE
Confidence 67999999999999999999874 33 45556655433322 222222211110 011136789
Q ss_pred EEEeCCCCccc------ccccCCCCCCCCceEEEEeccccccc--cccCCCccEEecCCCHHHHHHHHHHHhCCCCCCcc
Q 042307 82 VILDNIWANLD------LENVGIPFGDRGCGVLMTARSQDVLS--SKMDCQNNFLVGALNESEAWDLFKKLVGDKIENND 153 (1314)
Q Consensus 82 lvlD~v~~~~~------~~~~~~~~~~~~~~ilvTtr~~~~~~--~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~ 153 (1314)
||+|+++.... +..+.......+..||+|+.+..-.. ........+.+.+++.++....+.+.+...... -
T Consensus 102 IiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i 180 (482)
T PRK04195 102 ILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-C 180 (482)
T ss_pred EEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-C
Confidence 99999986522 22221111233456777775543211 012335678999999999999988877322222 2
Q ss_pred HHHHHHHHHHHhCCcHH-HHHHHHH
Q 042307 154 LKAVAVDIAKACGGLPI-AIVTIAR 177 (1314)
Q Consensus 154 ~~~~~~~i~~~~~g~Pl-ai~~~~~ 177 (1314)
..++...|++.++|-.. |+..+-.
T Consensus 181 ~~eaL~~Ia~~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 181 DDEALKEIAERSGGDLRSAINDLQA 205 (482)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 25678899999998654 4444433
No 78
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.87 E-value=4.9e-06 Score=86.96 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=127.7
Q ss_pred CCCccEEEcccCCCcc-cCCC----c-CCCCccEEEeCCCCCCcccCch-------------hhhCCCcccEEEecCCcC
Q 042307 330 LKNCTAISLHNCKIGE-LVDG----L-ECPRLKFFHISPREGFIKIPDN-------------FFTRLTELRVLDFTDMHL 390 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~-l~~~----~-~~~~L~~L~l~~~~~~~~~~~~-------------~f~~l~~L~~L~Ls~n~~ 390 (1314)
.++++.++|+.|.++. -+.. + ++..|++|.+.+|.. +..-.. ....-..||++....|++
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3478899999998842 2222 2 789999999998753 221111 124567899999999988
Q ss_pred CCCC-----cccccCccCcEEEcCCCcCCCc------cccCCCCCCCEEEccCccCc-----ccchhhcCCCCCCEEeec
Q 042307 391 LSLP-----SSLHLLVNLRTLCLDNGVLGDV------AVIGELKQLEILSFQGSNIE-----QLPREIGQLTRLRSLNLS 454 (1314)
Q Consensus 391 ~~lp-----~~~~~l~~L~~L~L~~~~~~~~------~~~~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~ 454 (1314)
..-+ ..|...+.|+.+.++.|.+... ..+..++||++|||..|-++ .+-..+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 7433 3577778999999999987532 56889999999999999776 234556778899999999
Q ss_pred cCCCCCccch-----hhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 455 SCYQLKAISS-----NVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 455 ~~~~l~~~~~-----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
+| .++.--. ..-...++|+.|.+.+|.+.. .........+...+.|..|++++|...
T Consensus 250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~--------da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNEITR--------DAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cc-ccccccHHHHHHHHhccCCCCceeccCcchhHH--------HHHHHHHHHHhcchhhHHhcCCccccc
Confidence 98 4443322 112346789999999998751 111223334555788999999998863
No 79
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=2.2e-05 Score=57.04 Aligned_cols=41 Identities=39% Similarity=0.593 Sum_probs=26.4
Q ss_pred CCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccch
Q 042307 423 KQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISS 464 (1314)
Q Consensus 423 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~ 464 (1314)
++|++|++++|+|+.+|..+++|++|++|++++| .+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3567777777777777766777777777777776 5555543
No 80
>PF14516 AAA_35: AAA-like domain
Probab=97.86 E-value=0.00057 Score=76.55 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=104.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-----cCHHHHH----HHHHHHhCCCcc-------ccCh-h
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-----PDIKKIQ----GQIADKLGLKFY-------EESE-S 64 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~----~~i~~~l~~~~~-------~~~~-~ 64 (1314)
+.|.|+-.+|||++..++.+..+.. .+ .++++++..- .+....+ ..+.++++.... .... .
T Consensus 34 ~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 34 IRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 6899999999999999999988754 23 4778988752 2344444 445555554421 0111 1
Q ss_pred HHHHHHHHHHhc--CCeEEEEEeCCCCccccc----cc----------CCCCCCCCceEEEEecccc--ccc----cccC
Q 042307 65 GRARKLCERLRK--EKKILVILDNIWANLDLE----NV----------GIPFGDRGCGVLMTARSQD--VLS----SKMD 122 (1314)
Q Consensus 65 ~~~~~~~~~l~~--~~~~LlvlD~v~~~~~~~----~~----------~~~~~~~~~~ilvTtr~~~--~~~----~~~~ 122 (1314)
.....+.+.+.+ +++.+|++|+|+..-... ++ +...+....-.+|...... ... +...
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFN 191 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFN 191 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcc
Confidence 112223333332 689999999998662211 11 0100011111222222111 111 1233
Q ss_pred CCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcC
Q 042307 123 CQNNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRNK 182 (1314)
Q Consensus 123 ~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 182 (1314)
....+++++|+.+|..+|..++... .. ....++|....||+|.-+..++..+...
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~-~~----~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLE-FS----QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhcc-CC----HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4557899999999999999887532 11 2238899999999999999999999665
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=2.3e-05 Score=86.72 Aligned_cols=137 Identities=15% Similarity=0.237 Sum_probs=84.3
Q ss_pred cccCCCccceecccCCCceeeecCCCCCCccccccEEEEecCCCccccccchHHhhcccccEEEEecCCchHHHhhccCC
Q 042307 890 MVALPSLEEMVLSNMGNLKTIWHSQFAGESFCKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGACGSLQEIFDLQEL 969 (1314)
Q Consensus 890 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 969 (1314)
+..+..++.|++++| .++.+| .++ ++|+.|.+.+|.+++. +|..+ .++|++|.+++|..+..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP--~LP----~sLtsL~Lsnc~nLts-LP~~L---P~nLe~L~Ls~Cs~L~sLP----- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP--VLP----NELTEITIENCNNLTT-LPGSI---PEGLEKLTVCHCPEISGLP----- 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC--CCC----CCCcEEEccCCCCccc-CCchh---hhhhhheEccCcccccccc-----
Confidence 345678999999998 788887 344 6799999999999875 56543 3589999999998776654
Q ss_pred cccccccccccccceeeecc--cCccceecccCCCcceecCcccEEEEecCCCcccc-cchhHHhhhccccEEeEeeccc
Q 042307 970 NSEETHSGAVSRLGKLHVFR--LPKLTKIWNKDPRGNLIFQNLVLVRIFECQRLKSV-FPTSVAKSLLQLERLSINNCES 1046 (1314)
Q Consensus 970 ~~~~~~~~~~~~L~~L~l~~--~~~l~~i~~~~~~~l~~l~~L~~L~l~~c~~L~~~-~~~~~~~~l~~L~~L~i~~c~~ 1046 (1314)
++|+.|++.+ |..++.+ | ++|++|.+.+++..... .|. .-.++|+.|+|++|..
T Consensus 112 ----------~sLe~L~L~~n~~~~L~~L----P------ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 112 ----------ESVRSLEIKGSATDSIKNV----P------NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSN 168 (426)
T ss_pred ----------cccceEEeCCCCCcccccC----c------chHhheecccccccccccccc---ccCCcccEEEecCCCc
Confidence 4566777653 2223332 2 34666666433211110 111 1124677777777764
Q ss_pred ceeEecccccccCCcceEeccccCceecccC
Q 042307 1047 VEEIVANEGRADEATTKFIFPSSTFLRLRDL 1077 (1314)
Q Consensus 1047 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 1077 (1314)
+. .+. .++.+|+.|.++.+
T Consensus 169 i~--LP~----------~LP~SLk~L~ls~n 187 (426)
T PRK15386 169 II--LPE----------KLPESLQSITLHIE 187 (426)
T ss_pred cc--Ccc----------cccccCcEEEeccc
Confidence 42 111 13557777777653
No 82
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=4.8e-06 Score=84.52 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=33.9
Q ss_pred CCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecCCCc
Q 042307 597 GFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKL 668 (1314)
Q Consensus 597 ~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l 668 (1314)
.||++..+.+..|+.-. . ..-.....+|.+-.|.+.. .++..|.... .+..|+.|..|.+++.|-.
T Consensus 197 ~Fpnv~sv~v~e~PlK~-~---s~ek~se~~p~~~~LnL~~-~~idswasvD-~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKT-E---SSEKGSEPFPSLSCLNLGA-NNIDSWASVD-ALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hcccchheeeecCcccc-h---hhcccCCCCCcchhhhhcc-cccccHHHHH-HHcCCchhheeeccCCccc
Confidence 36788888887776321 1 1112334556555565554 3344433221 1445666666666655443
No 83
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.84 E-value=0.00024 Score=81.35 Aligned_cols=145 Identities=21% Similarity=0.246 Sum_probs=82.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++..... | +.+.. ..+... .++ ........+.+......+.+
T Consensus 159 vLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~----~~l~~~---~~g------~~~~~i~~~f~~a~~~~p~i 218 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG----SELVRK---YIG------EGARLVREIFELAKEKAPSI 218 (364)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch----HHHHHH---hhh------HHHHHHHHHHHHHHhcCCcE
Confidence 6899999999999999999987522 2 22211 111111 111 11122333343344457789
Q ss_pred EEEeCCCCcc----------------cccccCCC---C-CCCCceEEEEeccccccccc----cCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL----------------DLENVGIP---F-GDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~----------------~~~~~~~~---~-~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea 137 (1314)
|++|+++... .+..+... + ...+.+||.||+.......+ ......+.++..+.++.
T Consensus 219 l~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r 298 (364)
T TIGR01242 219 IFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGR 298 (364)
T ss_pred EEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHH
Confidence 9999987641 01111100 1 12356788888764432211 13355788999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
.++|..++........ .....+++.+.|.
T Consensus 299 ~~Il~~~~~~~~l~~~--~~~~~la~~t~g~ 327 (364)
T TIGR01242 299 LEILKIHTRKMKLAED--VDLEAIAKMTEGA 327 (364)
T ss_pred HHHHHHHHhcCCCCcc--CCHHHHHHHcCCC
Confidence 9999988743221111 1145677777765
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.82 E-value=3.2e-06 Score=98.73 Aligned_cols=103 Identities=25% Similarity=0.319 Sum_probs=45.5
Q ss_pred CCCccEEEcccCCCcccCC-CcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEc
Q 042307 330 LKNCTAISLHNCKIGELVD-GLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCL 408 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L 408 (1314)
++++..+++.+|.+..+.. .-.+++|++|++++|.+. .+.. +..+..|+.|++++|.+..++ .+..++.|+.+++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 4445555555555555544 224444555555444432 1111 233444444444444444432 2233444444444
Q ss_pred CCCcCCCccc--cCCCCCCCEEEccCccCc
Q 042307 409 DNGVLGDVAV--IGELKQLEILSFQGSNIE 436 (1314)
Q Consensus 409 ~~~~~~~~~~--~~~L~~L~~L~L~~~~i~ 436 (1314)
++|.+..+.. ...+..|+.+++.+|.+.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 4444444433 344444444444444443
No 85
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00031 Score=82.56 Aligned_cols=162 Identities=13% Similarity=0.062 Sum_probs=87.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC-----ccccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK-----FYEESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~~~~l~- 75 (1314)
+.++|++|+||||+|+.+++.....+.+...+|.+.+. ..+....... .........+..+...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~ 110 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLL 110 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCCCceEEecccccCCHHHHHHHHHHHhh
Confidence 57899999999999999998875322222122221100 0000000000 000111222222322222
Q ss_pred ---cCCeEEEEEeCCCCcc--cccccCCCC--CCCCceEEEEec-cccccccccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 76 ---KEKKILVILDNIWANL--DLENVGIPF--GDRGCGVLMTAR-SQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 76 ---~~~~~LlvlD~v~~~~--~~~~~~~~~--~~~~~~ilvTtr-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
.+++-++|+|+++... .+..+.... +...+.+|++|. ...+..........+++.+++.++..+.+.+.+..
T Consensus 111 ~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 111 APLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred ccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHH
Confidence 1466789999997652 233331111 123445454443 34433312233567999999999999999887732
Q ss_pred CCCCccHHHHHHHHHHHhCCcHHHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPIAI 172 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Plai 172 (1314)
.... ..++.+..|++.++|.+..+
T Consensus 191 egi~-i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 191 EGRE-AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 2211 13567889999999988544
No 86
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00016 Score=84.43 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=88.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc------------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK------------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLK 57 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~------------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 57 (1314)
+.++|+.|+||||+|+.+++...... .|..+++++......
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~g--------------- 105 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRG--------------- 105 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCC---------------
Confidence 46899999999999999998775311 111233333322212
Q ss_pred ccccChhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCCCC--CCCCce-EEEEeccccccccccCCCccEE
Q 042307 58 FYEESESGRARKLCERLR----KEKKILVILDNIWANL--DLENVGIPF--GDRGCG-VLMTARSQDVLSSKMDCQNNFL 128 (1314)
Q Consensus 58 ~~~~~~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~~~~--~~~~~~-ilvTtr~~~~~~~~~~~~~~~~ 128 (1314)
.+.+..+.+... .++.-++|||+++... .++.+.... +..+++ |++||....+......-...+.
T Consensus 106 ------VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~ 179 (700)
T PRK12323 106 ------VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFN 179 (700)
T ss_pred ------HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcc
Confidence 222333333322 2567799999998762 233321111 223445 4555555555432233456899
Q ss_pred ecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHH
Q 042307 129 VGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAI 172 (1314)
Q Consensus 129 l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 172 (1314)
++.++.++..+.+.+.++..... ...+..+.|++.++|.|...
T Consensus 180 f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 180 LKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred cCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 99999999999998877432222 22455678999999988643
No 87
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00029 Score=80.23 Aligned_cols=148 Identities=11% Similarity=0.127 Sum_probs=85.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-------------------CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-------------------FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.+++....... +..+++++.+...
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~--------------------- 99 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRT--------------------- 99 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccC---------------------
Confidence 578999999999999999988642111 1112222221111
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCC--CCCCCCceEEEEeccc-cccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANL--DLENVGI--PFGDRGCGVLMTARSQ-DVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~~--~~~~~~~~ilvTtr~~-~~~~~~~~~~~~~~l~~l~ 133 (1314)
..+.+..+...+. .+++-++|+|+++... .++.+.. .-+....++|++|.+. .+..........+++++++
T Consensus 100 ~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~ 179 (363)
T PRK14961 100 KVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIIS 179 (363)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCC
Confidence 1222233333222 1456799999998763 2332211 1123455666665443 3332112234678999999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
.++..+.+...+..... .-.++.+..|++.++|.|..
T Consensus 180 ~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 180 EEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 99999998886632211 12345678899999998753
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.79 E-value=0.00021 Score=71.83 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=73.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.+||++|+||||||.-++++.... | .+++...-... ..+..+...+ +++.+
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~---------------------~dl~~il~~l--~~~~I 104 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKA---------------------GDLAAILTNL--KEGDI 104 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SC---------------------HHHHHHHHT----TT-E
T ss_pred EEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhH---------------------HHHHHHHHhc--CCCcE
Confidence 5789999999999999999998743 3 23332111111 1111122222 23345
Q ss_pred EEEeCCCCcc---------cccccCC--C-CCC----------CCc-eEEEEecccccccccc-CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL---------DLENVGI--P-FGD----------RGC-GVLMTARSQDVLSSKM-DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~---------~~~~~~~--~-~~~----------~~~-~ilvTtr~~~~~~~~~-~~~~~~~l~~l~~~ea 137 (1314)
|.+|++.... ..+...+ . -.+ +.. -|=.|||...+..... +..-..+++.++.+|-
T Consensus 105 LFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el 184 (233)
T PF05496_consen 105 LFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEEL 184 (233)
T ss_dssp EEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHH
T ss_pred EEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHH
Confidence 5567665431 0111100 0 001 112 2346788766655312 2233457999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
.+++.+.++. ..-.-.++.+.+|++++.|-|.-
T Consensus 185 ~~Iv~r~a~~-l~i~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 185 AKIVKRSARI-LNIEIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp HHHHHHCCHC-TT-EE-HHHHHHHHHCTTTSHHH
T ss_pred HHHHHHHHHH-hCCCcCHHHHHHHHHhcCCChHH
Confidence 9999887743 22344467899999999999954
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.78 E-value=0.00026 Score=82.52 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=93.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|..|+|||+||+.+++....+..-..++|+++. +....+...+... ....+.+.+. ..-+
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~dl 202 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYR--SVDL 202 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHH--hCCE
Confidence 5799999999999999999987643222347788643 2233344444221 1233444443 2348
Q ss_pred EEEeCCCCccc---c-cccC---CCCCCCCceEEEEecccc--cc---cc---ccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWANLD---L-ENVG---IPFGDRGCGVLMTARSQD--VL---SS---KMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~~~---~-~~~~---~~~~~~~~~ilvTtr~~~--~~---~~---~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
||+||++.... + +.+. ......+..+|+|+.... +. .. ++.....+.+++.+.++..+++.+.+.
T Consensus 203 LiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 203 LLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 88999975421 1 1111 011124557888876421 11 10 233345688999999999999999885
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
... ..-.++++..|++.+.|..-.+.
T Consensus 283 ~~~-~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 283 EEG-LELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HcC-CCCCHHHHHHHHHhcCCCHHHHH
Confidence 322 22236778889999988766433
No 90
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.77 E-value=9.2e-05 Score=81.55 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=60.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC--cCHHHHHHHHHHHhCCCccccChhHH------HHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT--PDIKKIQGQIADKLGLKFYEESESGR------ARKLCER 73 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~------~~~~~~~ 73 (1314)
++|+|++|+|||||++.+++....+ +|+..+|+.+.++ .++.++++.+...+-...-+...... +....++
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~ 249 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKR 249 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHH
Confidence 6899999999999999999988744 7998889998865 68899999884433211111111111 1112222
Q ss_pred H-hcCCeEEEEEeCCCCc
Q 042307 74 L-RKEKKILVILDNIWAN 90 (1314)
Q Consensus 74 l-~~~~~~LlvlD~v~~~ 90 (1314)
+ .++++++|++|++...
T Consensus 250 ~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 250 LVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHcCCCeEEEEEChhHH
Confidence 2 3589999999998654
No 91
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00047 Score=73.05 Aligned_cols=169 Identities=21% Similarity=0.251 Sum_probs=102.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||-||++++++-... |+.+... + -+-+.+| .....+..+.+.-++..+++
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS----E---lVqKYiG------EGaRlVRelF~lArekaPsI 247 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS----E---LVQKYIG------EGARLVRELFELAREKAPSI 247 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH----H---HHHHHhc------cchHHHHHHHHHHhhcCCeE
Confidence 6789999999999999999987632 3443332 1 1112222 12345566666666688999
Q ss_pred EEEeCCCCcc--------------------cccccCCCCCCCCceEEEEecccccccc----ccCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL--------------------DLENVGIPFGDRGCGVLMTARSQDVLSS----KMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~--------------------~~~~~~~~~~~~~~~ilvTtr~~~~~~~----~~~~~~~~~l~~l~~~ea 137 (1314)
|.+|.++... -+.++.--.+....|||..|...++... ..+....++++.-+.+..
T Consensus 248 IFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR 327 (406)
T COG1222 248 IFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGR 327 (406)
T ss_pred EEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHH
Confidence 9999987651 0112210011245799999988776554 123466788887777777
Q ss_pred HHHHHHHhCC--CCCCccHHHHHHHHHHHhCCcH----HHHHHHHHHHhcC------ChhHHHHHHHHh
Q 042307 138 WDLFKKLVGD--KIENNDLKAVAVDIAKACGGLP----IAIVTIARALRNK------NTFEWKNALREL 194 (1314)
Q Consensus 138 ~~l~~~~~~~--~~~~~~~~~~~~~i~~~~~g~P----lai~~~~~~l~~~------~~~~w~~~~~~l 194 (1314)
.++|.-|+.. -..+.++ +.+++.+.|.- .|+..=|++++-+ +.+++..+.++.
T Consensus 328 ~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 328 AEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 8888887742 2223333 35666666553 4566667766433 445555555543
No 92
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00026 Score=85.82 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=89.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-------------------CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-------------------FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.+++....... |..+++++......+..+ +.+.+.+
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdI-ReLie~v-------- 111 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDT-RELLDNV-------- 111 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHH-HHHHHHH--------
Confidence 468999999999999999988753211 111233332211111111 2222211
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCC--CCCCceEEEEe-ccccccccccCCCccEEecCCCHHHH
Q 042307 63 ESGRARKLCERLRKEKKILVILDNIWAN--LDLENVGIPF--GDRGCGVLMTA-RSQDVLSSKMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~LlvlD~v~~~--~~~~~~~~~~--~~~~~~ilvTt-r~~~~~~~~~~~~~~~~l~~l~~~ea 137 (1314)
...-..+++-++|||+++.. +..+.+.... +..+.++|++| ....+..........+++++++.++.
T Consensus 112 --------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI 183 (944)
T PRK14949 112 --------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEI 183 (944)
T ss_pred --------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHH
Confidence 00111267789999999876 2333321111 12345555544 44444332233357899999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH-HHHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 175 (1314)
.+.+.+.+.... .....+.+..|++.++|.|. |+.++
T Consensus 184 ~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 184 GTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999988774321 12235667899999999875 44443
No 93
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.0005 Score=81.62 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=91.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|..|+||||+|+.+++...... .|..+++++......+.+
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDd----------------- 103 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDE----------------- 103 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHH-----------------
Confidence 46899999999999999998764221 122244444332222222
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCCCC--CCCCceEEEEecccc-ccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANL--DLENVGIPF--GDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~~~~--~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~ 133 (1314)
+..+.+... .++.-++|||+++... .+..+.... ...+.++|++|++.. +......-...+.++.++
T Consensus 104 ----IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 104 ----MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred ----HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 222222211 2456689999998763 233331111 224567777766644 332123345679999999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcH-HHHHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLP-IAIVTI 175 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 175 (1314)
.++..+.+.+.++.... .-..+....|++.++|.. -|+.++
T Consensus 180 ~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 180 AGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999988753322 223566788999998864 465553
No 94
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00032 Score=82.22 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=87.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.+++...... .+-.++.++.+....+.+
T Consensus 40 yLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~Vdd----------------- 102 (702)
T PRK14960 40 YLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVED----------------- 102 (702)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHH-----------------
Confidence 46899999999999999998864211 111233444332222222
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCC--CCCCCCceEEEEecccc-ccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANL--DLENVGI--PFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~~--~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~ 133 (1314)
++.+..... .+++-++|+|+|+... ....+.. .-+..+.++|++|.+.. +..........+++++++
T Consensus 103 ----IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs 178 (702)
T PRK14960 103 ----TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLA 178 (702)
T ss_pred ----HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCC
Confidence 222222211 2566789999998662 2222211 11224557776665533 322123446789999999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
.++..+.+.+.+..... ....+.+..|++.++|-+.
T Consensus 179 ~eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 179 VDEITKHLGAILEKEQI-AADQDAIWQIAESAQGSLR 214 (702)
T ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 99999999887743222 2235567789999998764
No 95
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.00036 Score=81.19 Aligned_cols=177 Identities=14% Similarity=0.146 Sum_probs=103.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|.+|+|||+||+.+++.......-..++|++.. +....+...+... ....+....+ ...-+
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~--------~~~~f~~~~~-~~~dv 197 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG--------KLNEFREKYR-KKVDV 197 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc--------cHHHHHHHHH-hcCCE
Confidence 6799999999999999999987643222357888753 3444554444321 1123333333 34558
Q ss_pred EEEeCCCCcc-------cccccCCCCCCCCceEEEEeccc-c----cccc---ccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWANL-------DLENVGIPFGDRGCGVLMTARSQ-D----VLSS---KMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~~-------~~~~~~~~~~~~~~~ilvTtr~~-~----~~~~---~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
||+||++... .+..+.......|..||+||+.. . +... ++...-.+++++.+.++..+++.+.+.
T Consensus 198 LlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred EEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 8999997541 11111011122455788887532 1 1110 223345778999999999999998884
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHHHHHHHH------HhcC--ChhHHHHHHHHh
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAIVTIARA------LRNK--NTFEWKNALREL 194 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~------l~~~--~~~~w~~~~~~l 194 (1314)
... -.-.++++..|+++..|.--.+.-+-.. +.++ +.+..+++++.+
T Consensus 278 ~~~-~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 278 IEH-GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred hcC-CCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 322 2234677889999998865433332211 1222 555566666554
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.72 E-value=0.00031 Score=80.32 Aligned_cols=171 Identities=18% Similarity=0.158 Sum_probs=90.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCH--HHHH--HHHHHHhCCC-ccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDI--KKIQ--GQIADKLGLK-FYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~--~~i~~~l~~~-~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.++|++|+||||+|+.+++.......-..++++++++-... ..+. ....+.++.. ............+.++...
T Consensus 39 lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYAS 118 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHh
Confidence 679999999999999999988753221123566665432100 0000 0000001000 0001112223333333221
Q ss_pred -----CCeEEEEEeCCCCccc--ccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 77 -----EKKILVILDNIWANLD--LENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 77 -----~~~~LlvlD~v~~~~~--~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
..+-++|+||++.... ...+. +......+++|+||.... +..........+++.+++.++..+++.+.+.
T Consensus 119 ~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 119 YRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred cCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 3455899999976521 11121 111223467777765432 2221122345688899999999999988763
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
..... -..+.+..+++.++|.+-.+.
T Consensus 199 ~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 199 AEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred HcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 22211 235678899999988765443
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00045 Score=81.15 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=88.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc-------------------cCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND-------------------KLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.+++..... ..|..+++++......+.++ +.+.+.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~i-r~ii~~~-------- 111 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEET-KEILDNI-------- 111 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHH-HHHHHHH--------
Confidence 4689999999999999999865421 11223444443222222211 1111111
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCC--CCCCCCceEE-EEeccccccccccCCCccEEecCCCHHHH
Q 042307 63 ESGRARKLCERLRKEKKILVILDNIWANL--DLENVGI--PFGDRGCGVL-MTARSQDVLSSKMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~LlvlD~v~~~~--~~~~~~~--~~~~~~~~il-vTtr~~~~~~~~~~~~~~~~l~~l~~~ea 137 (1314)
...-..+++-++|+|+++... ..+.+.. .-+...+++| +||....+..........+++.+++.++.
T Consensus 112 --------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI 183 (546)
T PRK14957 112 --------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADI 183 (546)
T ss_pred --------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHH
Confidence 100112567799999997652 2222211 1112344544 55554444432233457899999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcH-HHHHHHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLP-IAIVTIAR 177 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 177 (1314)
.+.+.+.+..... ...++.+..|++.++|-+ .|+..+-.
T Consensus 184 ~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 184 KDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8888876632221 223556778999999965 45555533
No 98
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.70 E-value=0.00011 Score=72.50 Aligned_cols=101 Identities=20% Similarity=0.153 Sum_probs=57.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
+|.|+|++|+|||++|+++++..... -..+++++..+..........+... ............+..
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 86 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKAKPG 86 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccCCCe
Confidence 47899999999999999999998622 2347788766543322221111100 001111111125778
Q ss_pred EEEEeCCCCc-----ccccccCCCCC-----CCCceEEEEecccc
Q 042307 81 LVILDNIWAN-----LDLENVGIPFG-----DRGCGVLMTARSQD 115 (1314)
Q Consensus 81 LlvlD~v~~~-----~~~~~~~~~~~-----~~~~~ilvTtr~~~ 115 (1314)
++|+||++.. ..+........ ..+.++|+||+...
T Consensus 87 ~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 87 VLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred EEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 9999999853 12222111111 35678888888764
No 99
>PLN03025 replication factor C subunit; Provisional
Probab=97.70 E-value=0.00031 Score=78.78 Aligned_cols=158 Identities=14% Similarity=0.094 Sum_probs=87.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|++|+||||+|+.+++.......-..++-++.++...... .+.+.+.+..... ....++.-+
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~-------------~~~~~~~kv 102 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV-VRNKIKMFAQKKV-------------TLPPGRHKI 102 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHH-HHHHHHHHHhccc-------------cCCCCCeEE
Confidence 46899999999999999998874221112244444443333222 2222221111000 001145679
Q ss_pred EEEeCCCCccc--ccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccHHH
Q 042307 82 VILDNIWANLD--LENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDLKA 156 (1314)
Q Consensus 82 lvlD~v~~~~~--~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~ 156 (1314)
+|+|+++.... ...+. .......+++++++.... +..........+++++++.++..+.+...+......- ..+
T Consensus 103 iiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i-~~~ 181 (319)
T PLN03025 103 VILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY-VPE 181 (319)
T ss_pred EEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC-CHH
Confidence 99999987621 11111 111234567777665432 2221122245789999999999999988774322221 245
Q ss_pred HHHHHHHHhCCcH-HHHHH
Q 042307 157 VAVDIAKACGGLP-IAIVT 174 (1314)
Q Consensus 157 ~~~~i~~~~~g~P-lai~~ 174 (1314)
.+..|++.++|-. .|+..
T Consensus 182 ~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 182 GLEAIIFTADGDMRQALNN 200 (319)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 6788999998865 34433
No 100
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00025 Score=80.81 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=91.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc-----ccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFY-----EESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~- 75 (1314)
+.++|+.|+||||+|+.+++......... ...+.....- ..+......... .....+.+..+.+.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC----~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~ 115 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSC----LEITKGISSDVLEIDAASNRGIENIRELRDNVKF 115 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHH----HHHHccCCccceeechhhcccHHHHHHHHHHHHh
Confidence 57899999999999999998865322111 0111111111 111111111110 0111223333333332
Q ss_pred ---cCCeEEEEEeCCCCc--ccccccCCCCCC--CCceE-EEEeccccccccccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 76 ---KEKKILVILDNIWAN--LDLENVGIPFGD--RGCGV-LMTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 76 ---~~~~~LlvlD~v~~~--~~~~~~~~~~~~--~~~~i-lvTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
.++.-++|+|+|+.. +.++.+...... ....+ +.||....+..........+.+.+++.++..+.+.+.+..
T Consensus 116 ~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 116 APMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred hhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 256779999999866 234443211111 33444 4555545554422334567999999999999998887743
Q ss_pred CCCCccHHHHHHHHHHHhCCcHH-HHHHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 175 (1314)
... .-.++....|++..+|.+. |+.++
T Consensus 196 Egi-~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 196 ENV-QYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred cCC-CCCHHHHHHHHHHcCChHHHHHHHH
Confidence 222 2235667899999999874 44443
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.69 E-value=0.00019 Score=76.35 Aligned_cols=146 Identities=12% Similarity=0.131 Sum_probs=87.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|..|+|||+||+.+++...... ..++++++..... . + ... ...-+
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~------~----~-----------------~~~--~~~~~ 93 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLL------A----F-----------------DFD--PEAEL 93 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH------H----H-----------------hhc--ccCCE
Confidence 68999999999999999999875321 2466776544210 0 0 011 23347
Q ss_pred EEEeCCCCccccc--ccCCCC---CCCCc-eEEEEecccccccc-------ccCCCccEEecCCCHHHHHHHHHHHhCCC
Q 042307 82 VILDNIWANLDLE--NVGIPF---GDRGC-GVLMTARSQDVLSS-------KMDCQNNFLVGALNESEAWDLFKKLVGDK 148 (1314)
Q Consensus 82 lvlD~v~~~~~~~--~~~~~~---~~~~~-~ilvTtr~~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~~~~~ 148 (1314)
+|+||++...... .+.... ...+. .+++|++....... .......++++++++++-.+++.+.+...
T Consensus 94 liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~ 173 (227)
T PRK08903 94 YAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAER 173 (227)
T ss_pred EEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 8889997552211 111111 12333 36666654321110 11224678999999998878777655221
Q ss_pred CCCccHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042307 149 IENNDLKAVAVDIAKACGGLPIAIVTIARAL 179 (1314)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 179 (1314)
. -.-.+++.+.+++.+.|.+..+..+...+
T Consensus 174 ~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 174 G-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred C-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1 22235678889999999998877665554
No 102
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00064 Score=78.67 Aligned_cols=152 Identities=12% Similarity=0.115 Sum_probs=88.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc-------------------cCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND-------------------KLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.++...-.. .....++.++.+....+.++. .+.+.....
T Consensus 38 ~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR-~Iie~~~~~----- 111 (491)
T PRK14964 38 ILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIK-VILENSCYL----- 111 (491)
T ss_pred EEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHH-HHHHHHHhc-----
Confidence 5689999999999999998754210 112235566655443333322 222221100
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEe-ccccccccccCCCccEEecCCCHHHH
Q 042307 63 ESGRARKLCERLRKEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTA-RSQDVLSSKMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTt-r~~~~~~~~~~~~~~~~l~~l~~~ea 137 (1314)
-. .+++-++|+|+++... ..+.+. +.-+.+.+++|++| ....+..........+++.+++.++.
T Consensus 112 ----------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el 180 (491)
T PRK14964 112 ----------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKL 180 (491)
T ss_pred ----------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHH
Confidence 00 1466789999997652 222221 11123455655555 44444432233456789999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
.+.+.+.+..... .-.++.+..|++.++|.+..
T Consensus 181 ~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 181 VEHLVDIAKKENI-EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 9999888753222 22355677899999987753
No 103
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=1.7e-05 Score=96.22 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=61.6
Q ss_pred CCccEEEcccCCCc--ccCC--CcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEE
Q 042307 331 KNCTAISLHNCKIG--ELVD--GLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTL 406 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~--~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L 406 (1314)
.++++|++++...- .=+. +.-+|.|++|.+.+-.+...-...++.++++|+.||+|+++++.+ ..+++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35666666664321 1111 115677777777765433222234456677777777777777766 556777777777
Q ss_pred EcCCCcCCC---ccccCCCCCCCEEEccCccCc
Q 042307 407 CLDNGVLGD---VAVIGELKQLEILSFQGSNIE 436 (1314)
Q Consensus 407 ~L~~~~~~~---~~~~~~L~~L~~L~L~~~~i~ 436 (1314)
.+.+-.+.. +..+.+|++|++||+|.....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 666655442 355666777777777765433
No 104
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=8.1e-07 Score=100.78 Aligned_cols=125 Identities=21% Similarity=0.181 Sum_probs=82.5
Q ss_pred cCCCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEE
Q 042307 329 TLKNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLC 407 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~ 407 (1314)
.+..+...+++.|++..+.... -++.+++|+|++|.+... . .+..+.+|++|||++|.+..+|.-=..-.+|+.|+
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-D--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-H--HHHhcccccccccccchhccccccchhhhhheeee
Confidence 4566777888888877766655 567788888888765332 2 34778888888888888777765322222377777
Q ss_pred cCCCcCCCccccCCCCCCCEEEccCccCcccc--hhhcCCCCCCEEeeccC
Q 042307 408 LDNGVLGDVAVIGELKQLEILSFQGSNIEQLP--REIGQLTRLRSLNLSSC 456 (1314)
Q Consensus 408 L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~ 456 (1314)
+++|.++.+..+.+|++|+.||+++|-+.... .-++.|..|+.|.|.||
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777777777554221 12455666666666665
No 105
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00053 Score=76.70 Aligned_cols=166 Identities=15% Similarity=0.105 Sum_probs=92.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC--CCEEEEEEeccCcCHHHHHHHHHHHhCCC-------ccc-------cChhH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL--FDEVVYADVSQTPDIKKIQGQIADKLGLK-------FYE-------ESESG 65 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~-------~~~~~ 65 (1314)
+.|+|+.|+||||+|..+++..-.... +... .......-....+.+...-... ..+ .-..+
T Consensus 48 ~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd 124 (351)
T PRK09112 48 LLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVD 124 (351)
T ss_pred EeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHH
Confidence 578999999999999999998754211 1101 0011111112333333221110 000 11134
Q ss_pred HHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccc----CCCCCCCCceEEEEeccccccccccCCCccEEecCCCHH
Q 042307 66 RARKLCERLR----KEKKILVILDNIWANL--DLENV----GIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLVGALNES 135 (1314)
Q Consensus 66 ~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~----~~~~~~~~~~ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ 135 (1314)
.+..+.+.+. .+++-++|+|+++... ..+.+ ..| +....-|++|++...+..........+.+.+++.+
T Consensus 125 ~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~ 203 (351)
T PRK09112 125 EIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-PARALFILISHSSGRLLPTIRSRCQPISLKPLDDD 203 (351)
T ss_pred HHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC-CCCceEEEEECChhhccHHHHhhccEEEecCCCHH
Confidence 4445555554 2567799999998762 12222 112 22233455555554444322233468999999999
Q ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 136 EAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 136 ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
+..+++.+.... .. ..++.+..+++.++|.|.....
T Consensus 204 ~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 204 ELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred HHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 999999885322 11 2245577899999999975443
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.00059 Score=80.18 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=94.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|..|+|||.|++.+++.......-..++|++.. ++...+...+... ....+.+++. ..-+
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~~--------~~~~f~~~y~--~~DL 380 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRDG--------KGDSFRRRYR--EMDI 380 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHhc--------cHHHHHHHhh--cCCE
Confidence 6899999999999999999987632222357888743 2333333333211 1223444443 3467
Q ss_pred EEEeCCCCcc---cc----cccCCCCCCCCceEEEEecccc-----ccc---cccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWANL---DL----ENVGIPFGDRGCGVLMTARSQD-----VLS---SKMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~~---~~----~~~~~~~~~~~~~ilvTtr~~~-----~~~---~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
|||||++... .+ -++.......+..|||||+..- +.. .++...-.+.++..+.+...+++.+++.
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 8899997552 11 1111111234567888887631 111 0344456789999999999999998885
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
.... .-.+++++-|++++.+..-.+.
T Consensus 461 ~r~l-~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 461 QEQL-NAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred hcCC-CCCHHHHHHHHHhccCCHHHHH
Confidence 3322 2236778888888887654433
No 107
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00067 Score=75.90 Aligned_cols=150 Identities=15% Similarity=0.203 Sum_probs=89.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh----cccCCCEEEEEEe-ccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR----NDKLFDEVVYADV-SQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~----~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.++|+.|+||||+|+.++...- ...++|...|... +....+.+ .+++.+.+..... .
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p~----------------~ 91 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKPY----------------E 91 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCcc----------------c
Confidence 46899999999999999998753 2345565555442 22223333 2222232221100 1
Q ss_pred CCeEEEEEeCCCCc--ccccccC--CCCCCCCceEEEEecccccc-ccccCCCccEEecCCCHHHHHHHHHHHhCCCCCC
Q 042307 77 EKKILVILDNIWAN--LDLENVG--IPFGDRGCGVLMTARSQDVL-SSKMDCQNNFLVGALNESEAWDLFKKLVGDKIEN 151 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~--~~~~~~~--~~~~~~~~~ilvTtr~~~~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 151 (1314)
+++-++|+|+++.. +.++.+. ..-+..++.+|++|.+.... +.-......+.+.+++.++..+.+.+.... .
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-~-- 168 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND-I-- 168 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC-C--
Confidence 46667788887654 2333331 12234577887777655422 211233568889999999999888776531 1
Q ss_pred ccHHHHHHHHHHHhCCcHHHHH
Q 042307 152 NDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 152 ~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
..+.++.++..++|.|..+.
T Consensus 169 --~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 169 --KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred --CHHHHHHHHHHcCCCHHHHH
Confidence 13446788999999886544
No 108
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=2.7e-05 Score=94.44 Aligned_cols=133 Identities=23% Similarity=0.218 Sum_probs=87.3
Q ss_pred CCCCccEEEeCCCCC-CcccCchhhhCCCcccEEEecCCcCC--CCCcccccCccCcEEEcCCCcCCCccccCCCCCCCE
Q 042307 351 ECPRLKFFHISPREG-FIKIPDNFFTRLTELRVLDFTDMHLL--SLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEI 427 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~-~~~~~~~~f~~l~~L~~L~Ls~n~~~--~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~ 427 (1314)
.-.+|++|+++|... ....|..+...++.|+.|.+++-.+. ++-.-..++++|+.||++++.++.+..+++|++|++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 345789999988763 33455666677888999988886654 233445677888888888888888888888888888
Q ss_pred EEccCccCcccc--hhhcCCCCCCEEeeccCCCCCcc--chhh---hcCCCCCcEEEcCCCcc
Q 042307 428 LSFQGSNIEQLP--REIGQLTRLRSLNLSSCYQLKAI--SSNV---ISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 428 L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~~--~~~~---l~~l~~L~~L~l~~~~~ 483 (1314)
|.+.+-.+..-+ ..+.+|++|++||+|.......- .... -..|++|+.||.+++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 888776665322 34677888888888764322211 1110 11355666666555544
No 109
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.63 E-value=0.00041 Score=81.86 Aligned_cols=175 Identities=17% Similarity=0.171 Sum_probs=103.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|.+|+|||+||+.+++.......-..++|++..+ ....+...+... ....+.+.+. ..-+
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~--------~~~~~~~~~~--~~dl 214 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN--------TMEEFKEKYR--SVDV 214 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC--------cHHHHHHHHh--cCCE
Confidence 67999999999999999999987442223477887543 223333333211 1233444443 3458
Q ss_pred EEEeCCCCccc----ccccCC---CCCCCCceEEEEecccc--c-------cccccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 82 VILDNIWANLD----LENVGI---PFGDRGCGVLMTARSQD--V-------LSSKMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 82 lvlD~v~~~~~----~~~~~~---~~~~~~~~ilvTtr~~~--~-------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
||+||++.... -+.+.. .....|..|++|+.... + .. ++.....+++++.+.++..+++.+.+
T Consensus 215 LiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 215 LLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS-RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh-HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 89999975411 111111 11124556888876532 1 11 33334578999999999999999988
Q ss_pred CCCCCCccHHHHHHHHHHHhCCcHHHHH----HHHHHH--hcC--ChhHHHHHHHHh
Q 042307 146 GDKIENNDLKAVAVDIAKACGGLPIAIV----TIARAL--RNK--NTFEWKNALREL 194 (1314)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~g~Plai~----~~~~~l--~~~--~~~~w~~~~~~l 194 (1314)
... ...-.+++++.|++.++|..-.+. .+..+. .++ +....+++++.+
T Consensus 294 ~~~-~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 294 EEE-GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHc-CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 432 122345778899999998765433 222221 122 555666666654
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.63 E-value=0.00092 Score=70.79 Aligned_cols=172 Identities=18% Similarity=0.172 Sum_probs=105.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCC----EEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHH-HHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFD----EVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRA-RKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~l~~ 76 (1314)
+.|+|.+|.|||++++++.........-+ -|+.|.+...++...++..|+++++............ ..+.+.++.
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~ 143 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRR 143 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999998876532112 2778888889999999999999999987655544443 334455555
Q ss_pred CCeEEEEEeCCCCc---------ccccccCCCCCC-CCceEEEEecccccccc----ccCCCccEEecCCCHHHHH-HHH
Q 042307 77 EKKILVILDNIWAN---------LDLENVGIPFGD-RGCGVLMTARSQDVLSS----KMDCQNNFLVGALNESEAW-DLF 141 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~---------~~~~~~~~~~~~-~~~~ilvTtr~~~~~~~----~~~~~~~~~l~~l~~~ea~-~l~ 141 (1314)
-+--+||+|++.+. +.+..+...... .-+-|.|-|+...-+-. ...-...+.++....++-+ .|+
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL 223 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLL 223 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHH
Confidence 56778999998764 111222111111 22345555555332210 0111345666665554444 333
Q ss_pred HHHh---C-CCCCCccHHHHHHHHHHHhCCcHHHHH
Q 042307 142 KKLV---G-DKIENNDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 142 ~~~~---~-~~~~~~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
.... . .....-...+.+..|...++|+.--+.
T Consensus 224 ~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 224 ASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 2222 1 222334457789999999999875443
No 111
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.63 E-value=0.00072 Score=78.55 Aligned_cols=133 Identities=19% Similarity=0.308 Sum_probs=76.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc---CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh---
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK---LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR--- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~--- 75 (1314)
|.++|++|+|||++|+.+++...... .....+|+++....-+.. ..+. ....+..+.+...
T Consensus 219 ILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~k------------yvGe-te~~ir~iF~~Ar~~a 285 (512)
T TIGR03689 219 VLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNK------------YVGE-TERQIRLIFQRAREKA 285 (512)
T ss_pred eEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccc------------ccch-HHHHHHHHHHHHHHHh
Confidence 67999999999999999999876321 112345555543211110 0001 1112222222222
Q ss_pred -cCCeEEEEEeCCCCcc---------cc-----cccCCCC----CCCCceEEEEecccccccccc----CCCccEEecCC
Q 042307 76 -KEKKILVILDNIWANL---------DL-----ENVGIPF----GDRGCGVLMTARSQDVLSSKM----DCQNNFLVGAL 132 (1314)
Q Consensus 76 -~~~~~LlvlD~v~~~~---------~~-----~~~~~~~----~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l 132 (1314)
.+++++++||+++... +. .++.... ...+..||.||........++ +....++++..
T Consensus 286 ~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~P 365 (512)
T TIGR03689 286 SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERP 365 (512)
T ss_pred hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCC
Confidence 2578999999998541 00 1111111 113445666776655333221 33556899999
Q ss_pred CHHHHHHHHHHHhCC
Q 042307 133 NESEAWDLFKKLVGD 147 (1314)
Q Consensus 133 ~~~ea~~l~~~~~~~ 147 (1314)
+.+++.++|..+...
T Consensus 366 d~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 366 DAEAAADIFSKYLTD 380 (512)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999998854
No 112
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00072 Score=78.75 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=88.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-------------------CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-------------------FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|++|+||||+|+.+++....... ...++.++.+....+..+ +.+.+.....
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~i-R~i~~~~~~~----- 112 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEI-RKIRDAVGYR----- 112 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHH-HHHHHHHhhC-----
Confidence 568999999999999999987653211 112333443322222221 1222111100
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCCCC--CCCCceEEE-EeccccccccccCCCccEEecCCCHHHH
Q 042307 63 ESGRARKLCERLRKEKKILVILDNIWANL--DLENVGIPF--GDRGCGVLM-TARSQDVLSSKMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~LlvlD~v~~~~--~~~~~~~~~--~~~~~~ilv-Ttr~~~~~~~~~~~~~~~~l~~l~~~ea 137 (1314)
.. .+++-++|+|+++... ..+.+.... +.....+|+ |+....+..........+++.+++.++.
T Consensus 113 ----------p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el 181 (472)
T PRK14962 113 ----------PM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELI 181 (472)
T ss_pred ----------hh-cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHH
Confidence 01 1467799999987552 222221111 122334443 4433444332233456889999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCC-cHHHHHHHHHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGG-LPIAIVTIARAL 179 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~l 179 (1314)
...+.+.+..... .-.++++..|++.++| .+.|+..+....
T Consensus 182 ~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 182 IKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9998887732211 2235667789988865 567777665533
No 113
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00098 Score=75.65 Aligned_cols=145 Identities=14% Similarity=0.035 Sum_probs=83.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+|||++|+.++...--.. |.| +.++..... .-
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD-~~~i~~~~~--------------------~i 97 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPD-VRVVAPEGL--------------------SI 97 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeccccc--------------------cC
Confidence 46899999999999999988654221 112 222211110 01
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEecc-ccccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTARS-QDVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~-~~~~~~~~~~~~~~~l~~l~ 133 (1314)
..+.++.+.+... .+++-++|+|+++... ....+. +.-+..+..+|++|.+ ..+.+........+.+++++
T Consensus 98 ~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~ 177 (394)
T PRK07940 98 GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPS 177 (394)
T ss_pred CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCC
Confidence 1222333333332 1456688889998762 111121 1112334555555544 44443222335688999999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
.++..+.+.+..+. ..+.+..+++.++|.|....
T Consensus 178 ~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 178 VEAVAEVLVRRDGV------DPETARRAARASQGHIGRAR 211 (394)
T ss_pred HHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHH
Confidence 99999998765431 13557789999999996543
No 114
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.59 E-value=0.00052 Score=78.74 Aligned_cols=145 Identities=20% Similarity=0.240 Sum_probs=81.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||++|+.+++..... | +.+..++ +.... .+ .....+..+........+.+
T Consensus 168 vLL~GppGtGKT~lAkaia~~~~~~--~---i~v~~~~----------l~~~~----~g-~~~~~i~~~f~~a~~~~p~I 227 (389)
T PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNAT--F---IRVVGSE----------LVQKF----IG-EGARLVRELFELAREKAPSI 227 (389)
T ss_pred eEEECCCCCChHHHHHHHHHHhCCC--E---EEeehHH----------HhHhh----cc-chHHHHHHHHHHHHhcCCeE
Confidence 6789999999999999999886521 2 2222111 11111 01 11223334444444457789
Q ss_pred EEEeCCCCcc------------c----ccccC---CC-CCCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL------------D----LENVG---IP-FGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~------------~----~~~~~---~~-~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
|+||+++... . +..+. .. ....+..||.||+.......++ .....++++..+.++.
T Consensus 228 lfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R 307 (389)
T PRK03992 228 IFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGR 307 (389)
T ss_pred EEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHH
Confidence 9999998641 0 11110 00 1123556787877654332211 2356799999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
.++|..+......... .....+++.+.|.
T Consensus 308 ~~Il~~~~~~~~~~~~--~~~~~la~~t~g~ 336 (389)
T PRK03992 308 LEILKIHTRKMNLADD--VDLEELAELTEGA 336 (389)
T ss_pred HHHHHHHhccCCCCCc--CCHHHHHHHcCCC
Confidence 9999988743221111 1134566666664
No 115
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.58 E-value=0.0015 Score=74.48 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=82.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||++|+.+++..... | +.+..+ .... ..++ .....+..+........+.+
T Consensus 182 vLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~s------~l~~---k~~g------e~~~~lr~lf~~A~~~~P~I 241 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVGS------EFVQ---KYLG------EGPRMVRDVFRLARENAPSI 241 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC--E---EEEehH------HHHH---Hhcc------hhHHHHHHHHHHHHhcCCeE
Confidence 6799999999999999999876522 2 222211 1111 1111 11223444555555578899
Q ss_pred EEEeCCCCcc------------c----ccccCCC----CCCCCceEEEEeccccccccc-c---CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL------------D----LENVGIP----FGDRGCGVLMTARSQDVLSSK-M---DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~------------~----~~~~~~~----~~~~~~~ilvTtr~~~~~~~~-~---~~~~~~~l~~l~~~ea 137 (1314)
+++|+++... . +..+... ....+..||+||........+ . .....++++..+.++.
T Consensus 242 LfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R 321 (398)
T PTZ00454 242 IFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 321 (398)
T ss_pred EEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHH
Confidence 9999987531 0 0011000 112356788888765543321 1 3456788999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
.++|..+........+ ....++++...|.
T Consensus 322 ~~Il~~~~~~~~l~~d--vd~~~la~~t~g~ 350 (398)
T PTZ00454 322 RLIFQTITSKMNLSEE--VDLEDFVSRPEKI 350 (398)
T ss_pred HHHHHHHHhcCCCCcc--cCHHHHHHHcCCC
Confidence 9999877743221111 1134666667665
No 116
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.00065 Score=80.64 Aligned_cols=152 Identities=13% Similarity=0.169 Sum_probs=86.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-------------------CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-------------------FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.+++....... |..++.++......+
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gV------------------- 101 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGI------------------- 101 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCH-------------------
Confidence 578999999999999999887542211 111223332222221
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCccc--ccccCC--CCCCCCceEEEEeccc-cccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANLD--LENVGI--PFGDRGCGVLMTARSQ-DVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~~--~~~~~~--~~~~~~~~ilvTtr~~-~~~~~~~~~~~~~~l~~l~ 133 (1314)
+.++.+..... .+++-++|+|+++.... ...+.. .-....+++|++|.+. .+..........+.+..++
T Consensus 102 --d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls 179 (709)
T PRK08691 102 --DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMT 179 (709)
T ss_pred --HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCC
Confidence 22222222111 14667899999986532 222211 1112345666665443 3332123334568888999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH-HHHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 175 (1314)
.++..+.+.+.+..... .-..+.+..|++.++|.+. |+..+
T Consensus 180 ~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 180 AQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999887743222 2234567899999998874 44433
No 117
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00072 Score=80.39 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=86.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.++....... .|..+++++.+....+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd------------------ 102 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVD------------------ 102 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHH------------------
Confidence 46899999999999999998864211 12223344332222222
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCccc--ccccC--CCCCCCCceEEE-EeccccccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANLD--LENVG--IPFGDRGCGVLM-TARSQDVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~~--~~~~~--~~~~~~~~~ilv-Ttr~~~~~~~~~~~~~~~~l~~l~ 133 (1314)
.++.+..... .+++-++|+|+++.... ...+. +.-+...+.+|+ ||..+.+..........+++++++
T Consensus 103 ---~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~ 179 (527)
T PRK14969 103 ---AMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (527)
T ss_pred ---HHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCC
Confidence 2222222221 25677999999986632 22221 111123455554 444443332112235678899999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH-HHHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 175 (1314)
.++..+.+.+.+..... ...++.+..|++.++|.+. |+..+
T Consensus 180 ~~~i~~~L~~il~~egi-~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 180 PPLIVSHLQHILEQENI-PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999988887732221 2234567889999999774 44444
No 118
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.00071 Score=80.82 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=87.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-------------------CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-------------------FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.+++....... |..+++++.....
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~--------------------- 99 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRT--------------------- 99 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccC---------------------
Confidence 468999999999999999987653211 1112222222111
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCC--CCCCCCceE-EEEeccccccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANL--DLENVGI--PFGDRGCGV-LMTARSQDVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~~--~~~~~~~~i-lvTtr~~~~~~~~~~~~~~~~l~~l~ 133 (1314)
..+.++.+.+.+. .+++-++|+|+|+... ..+.+.. .-+....++ ++||....+......-...+.+++++
T Consensus 100 ~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls 179 (647)
T PRK07994 100 KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179 (647)
T ss_pred CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCC
Confidence 1222233332222 2567799999998762 2222211 111234454 45555454443222335789999999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH-HHHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 175 (1314)
.++..+.+.+.+..... ...++....|++.++|.+. |+.++
T Consensus 180 ~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 180 VEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999887632111 2234566789999999775 44444
No 119
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.53 E-value=0.00044 Score=84.58 Aligned_cols=145 Identities=19% Similarity=0.308 Sum_probs=80.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh-cCCeE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR-KEKKI 80 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~ 80 (1314)
+.++|++|+||||+|+.+++... ..|. .++... ..+.++ +. .+......+. .+++.
T Consensus 55 lLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di-r~----------------~i~~a~~~l~~~~~~~ 111 (725)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL-RA----------------EVDRAKERLERHGKRT 111 (725)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH-HH----------------HHHHHHHHhhhcCCce
Confidence 57899999999999999998765 2231 222111 011100 00 1111111111 14677
Q ss_pred EEEEeCCCCcc--cccccCCCCCCCCceEEEE--ecccc--ccccccCCCccEEecCCCHHHHHHHHHHHhCC------C
Q 042307 81 LVILDNIWANL--DLENVGIPFGDRGCGVLMT--ARSQD--VLSSKMDCQNNFLVGALNESEAWDLFKKLVGD------K 148 (1314)
Q Consensus 81 LlvlD~v~~~~--~~~~~~~~~~~~~~~ilvT--tr~~~--~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~------~ 148 (1314)
++|+|||+... ..+.+ .+.-..+..++|+ |.+.. +..........+.+++++.++..+++.+.+.. .
T Consensus 112 IL~IDEIh~Ln~~qQdaL-L~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~ 190 (725)
T PRK13341 112 ILFIDEVHRFNKAQQDAL-LPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGD 190 (725)
T ss_pred EEEEeChhhCCHHHHHHH-HHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 99999997652 23333 2222345455553 33321 11111222457899999999999999887631 1
Q ss_pred CCCccHHHHHHHHHHHhCCcHH
Q 042307 149 IENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
....-.++..+.|++.+.|...
T Consensus 191 ~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 191 RKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cccCCCHHHHHHHHHhCCCCHH
Confidence 1122335667889999988643
No 120
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.00079 Score=79.11 Aligned_cols=166 Identities=14% Similarity=0.090 Sum_probs=85.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc-----ccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFY-----EESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~- 75 (1314)
+.++|+.|+||||+|+.+++.....+..+.. .++. -...+.+......... .....+.++.+.....
T Consensus 41 ~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~---~Cg~----C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~ 113 (605)
T PRK05896 41 YIFSGPRGIGKTSIAKIFAKAINCLNPKDGD---CCNS----CSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINY 113 (605)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCcc----cHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHh
Confidence 4689999999999999999886532211100 0000 0111111111111000 0011122233322222
Q ss_pred ---cCCeEEEEEeCCCCc--ccccccCC--CCCCCCceEE-EEeccccccccccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 76 ---KEKKILVILDNIWAN--LDLENVGI--PFGDRGCGVL-MTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 76 ---~~~~~LlvlD~v~~~--~~~~~~~~--~~~~~~~~il-vTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
.+++-++|+|+++.. ..+..+.. .-+..++.+| +|+....+..........+++.+++.++..+.+.+.+..
T Consensus 114 ~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 114 LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred chhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH
Confidence 134456999998765 22222211 1112344444 444444443322233567899999999999999887632
Q ss_pred CCCCccHHHHHHHHHHHhCCcHH-HHHHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 175 (1314)
.... -..+.+..+++.++|.+. |+..+
T Consensus 194 egi~-Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 194 EKIK-IEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred cCCC-CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 2211 124567889999998654 44444
No 121
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.51 E-value=0.0019 Score=73.29 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=84.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|..|+||||+|+.+++.......-...+.++.+.......+...+ ..+....+ .....+-+
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i-~~~~~~~~--------------~~~~~~~v 105 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKI-KEFARTAP--------------VGGAPFKI 105 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHH-HHHHhcCC--------------CCCCCceE
Confidence 6799999999999999999887533211112222222222222111111 11100000 00134668
Q ss_pred EEEeCCCCccc-----ccccCCCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccHH
Q 042307 82 VILDNIWANLD-----LENVGIPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDLK 155 (1314)
Q Consensus 82 lvlD~v~~~~~-----~~~~~~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~ 155 (1314)
+|+|+++.... +..+ .......+++|+++.... +..........+++++++.++....+...+..... .-..
T Consensus 106 viiDe~~~l~~~~~~~L~~~-le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i~~ 183 (319)
T PRK00440 106 IFLDEADNLTSDAQQALRRT-MEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-EITD 183 (319)
T ss_pred EEEeCcccCCHHHHHHHHHH-HhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-CCCH
Confidence 99999876521 2222 111223456777664332 22211123446889999999999999887743222 1235
Q ss_pred HHHHHHHHHhCCcHHH
Q 042307 156 AVAVDIAKACGGLPIA 171 (1314)
Q Consensus 156 ~~~~~i~~~~~g~Pla 171 (1314)
+.+..+++.++|.+..
T Consensus 184 ~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 184 DALEAIYYVSEGDMRK 199 (319)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 6788999999998754
No 122
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.0011 Score=79.07 Aligned_cols=165 Identities=11% Similarity=0.064 Sum_probs=85.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC--CEEEEEEeccCcCHHHHHHHHHHHhC-----CCccccChhHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF--DEVVYADVSQTPDIKKIQGQIADKLG-----LKFYEESESGRARKLCERL 74 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~~~~l 74 (1314)
+.++|+.|+||||+|+.+++..-..... ++...-.++.. ...+.|...-. .........+.++.+.+..
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~ 116 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQA 116 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHH
Confidence 4689999999999999998776421100 11101111111 11111110000 0000011122233333322
Q ss_pred h----cCCeEEEEEeCCCCcc--cccccCCCC--CCCCceEEEE-eccccccccccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 75 R----KEKKILVILDNIWANL--DLENVGIPF--GDRGCGVLMT-ARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 75 ~----~~~~~LlvlD~v~~~~--~~~~~~~~~--~~~~~~ilvT-tr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
. .++.-++|||+|+... .+..+.... +...+++|++ |....+..........++++.++.++..+.+.+.+
T Consensus 117 ~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 117 VYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred HhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHH
Confidence 2 1456689999998762 233321111 1234455544 44444433223445789999999999999998877
Q ss_pred CCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 146 GDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
...... ...+.+..|++.++|-+.-
T Consensus 197 ~~egi~-ie~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 197 AAENVP-AEPQALRLLARAARGSMRD 221 (618)
T ss_pred HHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 432222 2245678899999987643
No 123
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.46 E-value=1.5e-05 Score=96.89 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=21.5
Q ss_pred cCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccccc
Q 042307 768 IQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMD 807 (1314)
Q Consensus 768 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 807 (1314)
+++|+.|++++|..+++..-......+++|++|.+.+|..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSN 281 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCc
Confidence 4566666666665555443333333455666666655654
No 124
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.46 E-value=8e-06 Score=99.34 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=74.7
Q ss_pred cccccEEEEecCCCccccccchHHhhcccccEEEEecC-CchHHHhhccCCcccccccccccccceeeecccCccceecc
Q 042307 920 FCKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGAC-GSLQEIFDLQELNSEETHSGAVSRLGKLHVFRLPKLTKIWN 998 (1314)
Q Consensus 920 ~~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 998 (1314)
++.|+.+.+.+|..+++..-......++.|++|++++| ......+.... .....+.+|+.|+++.|..+++.-.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL-----LLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh-----hhhhhcCCcCccchhhhhccCchhH
Confidence 47889999989988886322345577888999999874 32222211000 0122346777777777776554311
Q ss_pred cCCCcc-eecCcccEEEEecCCCcccccchhHHhhhccccEEeEeecccc
Q 042307 999 KDPRGN-LIFQNLVLVRIFECQRLKSVFPTSVAKSLLQLERLSINNCESV 1047 (1314)
Q Consensus 999 ~~~~~l-~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~i~~c~~l 1047 (1314)
..+ ..+++|+.|.+.+|..+++..-..+...+++|++|++++|..+
T Consensus 262 ---~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 262 ---SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred ---HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 111 1266777777777777666655666667777777777777765
No 125
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0013 Score=74.24 Aligned_cols=125 Identities=22% Similarity=0.314 Sum_probs=83.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.+||++|.|||-||+.++++... -||++..+.-+. .++| .....++.+..+-+...+|.
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~-------NFisVKGPELlN-------kYVG------ESErAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGA-------NFISVKGPELLN-------KYVG------ESERAVRQVFQRARASAPCV 607 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccC-------ceEeecCHHHHH-------HHhh------hHHHHHHHHHHHhhcCCCeE
Confidence 679999999999999999998763 356666542211 1111 12234566777777789999
Q ss_pred EEEeCCCCcc-------------cccccCCCC----CCCCceEEEEeccccccccc----cCCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANL-------------DLENVGIPF----GDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~-------------~~~~~~~~~----~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea~~l 140 (1314)
|.||.++... ...++...+ ...|..||-.|...++...+ .+-.+.+-++.-..+|..++
T Consensus 608 IFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~I 687 (802)
T KOG0733|consen 608 IFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAI 687 (802)
T ss_pred EEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHH
Confidence 9999987651 111221111 23677888888777755432 23356777888889999999
Q ss_pred HHHHhC
Q 042307 141 FKKLVG 146 (1314)
Q Consensus 141 ~~~~~~ 146 (1314)
++..+.
T Consensus 688 LK~~tk 693 (802)
T KOG0733|consen 688 LKTITK 693 (802)
T ss_pred HHHHhc
Confidence 998885
No 126
>PRK06620 hypothetical protein; Validated
Probab=97.43 E-value=0.00069 Score=70.30 Aligned_cols=133 Identities=14% Similarity=0.019 Sum_probs=79.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+|||+|++.+++... ..++. .... . . ... ...-+
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~----------------~--------~---~~~--~~~d~ 88 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFF----------------N--------E---EIL--EKYNA 88 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhh----------------c--------h---hHH--hcCCE
Confidence 68999999999999998766542 12222 0000 0 0 011 12346
Q ss_pred EEEeCCCCccc--ccccCCCCCCCCceEEEEeccccccc---c---ccCCCccEEecCCCHHHHHHHHHHHhCCCCCCcc
Q 042307 82 VILDNIWANLD--LENVGIPFGDRGCGVLMTARSQDVLS---S---KMDCQNNFLVGALNESEAWDLFKKLVGDKIENND 153 (1314)
Q Consensus 82 lvlD~v~~~~~--~~~~~~~~~~~~~~ilvTtr~~~~~~---~---~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~ 153 (1314)
+++||++...+ +-.+.......|..+|+|++.....- . ++...-.+++++++.++..+++.+.+.... -.-
T Consensus 89 lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-l~l 167 (214)
T PRK06620 89 FIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS-VTI 167 (214)
T ss_pred EEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-CCC
Confidence 88899974422 22221112245778999987543211 0 233344799999999999999888874221 123
Q ss_pred HHHHHHHHHHHhCCcHHHHH
Q 042307 154 LKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 154 ~~~~~~~i~~~~~g~Plai~ 173 (1314)
.+++++-|++++.|---.+.
T Consensus 168 ~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 168 SRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CHHHHHHHHHHccCCHHHHH
Confidence 36778888888887654443
No 127
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0015 Score=77.04 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=86.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.+++..--.. .+..++.++.+....+.++ +.+.+.+...
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~----- 114 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYA----- 114 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhc-----
Confidence 46899999999999999998764321 1223455554433333332 2233222111
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEE-eccccccccccCCCccEEecCCCHHHH
Q 042307 63 ESGRARKLCERLRKEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMT-ARSQDVLSSKMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvT-tr~~~~~~~~~~~~~~~~l~~l~~~ea 137 (1314)
-..++.-++|+|+|+... ....+. +.-+...+++|++ |....+..........+++++++.++.
T Consensus 115 -----------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i 183 (509)
T PRK14958 115 -----------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQI 183 (509)
T ss_pred -----------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHH
Confidence 012566789999998752 222221 1112234555554 444444332223356788999999998
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
.+.+...+...... ...+.+..|++.++|-+.-
T Consensus 184 ~~~l~~il~~egi~-~~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 184 AAHCQHLLKEENVE-FENAALDLLARAANGSVRD 216 (509)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHH
Confidence 88877776322222 1245567889999987743
No 128
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.00022 Score=68.60 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=44.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCC-eE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEK-KI 80 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~ 80 (1314)
|.|+|++|+|||++|+.+++... + .++.++.+.-.+. ........+..+.+...+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~-~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----F-PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----S-EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----c-ccccccccccccc---------------cccccccccccccccccccccce
Confidence 67999999999999999999985 2 2566665442110 11112233444444444344 89
Q ss_pred EEEEeCCCCc
Q 042307 81 LVILDNIWAN 90 (1314)
Q Consensus 81 LlvlD~v~~~ 90 (1314)
++++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999998765
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0016 Score=75.55 Aligned_cols=149 Identities=10% Similarity=0.110 Sum_probs=88.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|+.|+|||+||+.+++..... -..++|++.. .....+...+... ....+.... ...-+
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~------~f~~~~~~~l~~~--------~~~~f~~~~--~~~dv 205 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSE------LFTEHLVSAIRSG--------EMQRFRQFY--RNVDA 205 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeHH------HHHHHHHHHHhcc--------hHHHHHHHc--ccCCE
Confidence 6799999999999999999987643 2347777632 3333444444211 112233222 24458
Q ss_pred EEEeCCCCccc----ccccCCCC---CCCCceEEEEecccc-----cccc---ccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWANLD----LENVGIPF---GDRGCGVLMTARSQD-----VLSS---KMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~~~----~~~~~~~~---~~~~~~ilvTtr~~~-----~~~~---~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
+++||+..... .+.+...+ ...|..||+||.... +... +....-.+.+++++.++..+++.+.+.
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 88899865421 11111111 124567888885421 1111 233345788999999999999998884
Q ss_pred CCCCCccHHHHHHHHHHHhCCcH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLP 169 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~P 169 (1314)
... ..-.++++.-|++...+.-
T Consensus 286 ~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 286 ALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HcC-CCCCHHHHHHHHHhcCCCH
Confidence 322 2223566777888777553
No 130
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.0022 Score=77.14 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=86.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCC----------------EEEEEEeccCcCHHHHHHHHHHHhCCCccccChhH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFD----------------EVVYADVSQTPDIKKIQGQIADKLGLKFYEESESG 65 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~----------------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 65 (1314)
+.++|+.|+||||+|+.+++..-.....+ .+++++.... ...+
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn---------------------~~vd 101 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASN---------------------NGVD 101 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecccc---------------------CCHH
Confidence 46899999999999999998754211100 0111211110 1122
Q ss_pred HHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCC--CCCCCCce-EEEEeccccccccccCCCccEEecCCCHHH
Q 042307 66 RARKLCERLR----KEKKILVILDNIWANL--DLENVGI--PFGDRGCG-VLMTARSQDVLSSKMDCQNNFLVGALNESE 136 (1314)
Q Consensus 66 ~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~~--~~~~~~~~-ilvTtr~~~~~~~~~~~~~~~~l~~l~~~e 136 (1314)
.++.+.+... .+++-++|+|+|+... .+..+.. .-+...+. |++|++...+..........+++.+++.++
T Consensus 102 ~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~ee 181 (725)
T PRK07133 102 EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDE 181 (725)
T ss_pred HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHH
Confidence 3334443333 2566789999987652 2333311 11122334 555655555543223335689999999999
Q ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcH-HHHHHHH
Q 042307 137 AWDLFKKLVGDKIENNDLKAVAVDIAKACGGLP-IAIVTIA 176 (1314)
Q Consensus 137 a~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~ 176 (1314)
..+.+...+..... ....+.+..|++.++|-+ .|+..+-
T Consensus 182 I~~~L~~il~kegI-~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 182 IVSRLEFILEKENI-SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99998876532111 112456788999998866 4544443
No 131
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.37 E-value=0.00077 Score=77.20 Aligned_cols=125 Identities=19% Similarity=0.221 Sum_probs=73.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++.... .| +.+..+. + .... .+ .....+..+........+.+
T Consensus 220 VLL~GPPGTGKT~LAraIA~el~~--~f---i~V~~se---L-------~~k~----~G-e~~~~vr~lF~~A~~~~P~I 279 (438)
T PTZ00361 220 VILYGPPGTGKTLLAKAVANETSA--TF---LRVVGSE---L-------IQKY----LG-DGPKLVRELFRVAEENAPSI 279 (438)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCC--CE---EEEecch---h-------hhhh----cc-hHHHHHHHHHHHHHhCCCcE
Confidence 678999999999999999998652 23 2222111 1 1111 00 11222344444444467889
Q ss_pred EEEeCCCCccc----------------ccccCCC----CCCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LENVGIP----FGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~~~~----~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
++||+++.... +..+... ....+.+||+||+.......++ .....++++..+.++.
T Consensus 280 LfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 280 VFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred EeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHH
Confidence 99999764310 0000000 0123567888887655433221 3356788999999999
Q ss_pred HHHHHHHhC
Q 042307 138 WDLFKKLVG 146 (1314)
Q Consensus 138 ~~l~~~~~~ 146 (1314)
.++|..+..
T Consensus 360 ~~Il~~~~~ 368 (438)
T PTZ00361 360 RRIFEIHTS 368 (438)
T ss_pred HHHHHHHHh
Confidence 999998874
No 132
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.37 E-value=9.1e-05 Score=77.79 Aligned_cols=127 Identities=20% Similarity=0.221 Sum_probs=87.6
Q ss_pred CCCccEEEcccCCCcccCCC-----c-CCCCccEEEeCCCCCCcc---cCchhhhCCCcccEEEecCCcCC-----CCCc
Q 042307 330 LKNCTAISLHNCKIGELVDG-----L-ECPRLKFFHISPREGFIK---IPDNFFTRLTELRVLDFTDMHLL-----SLPS 395 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~~-----~-~~~~L~~L~l~~~~~~~~---~~~~~f~~l~~L~~L~Ls~n~~~-----~lp~ 395 (1314)
...+|++...+|++.+-+.. + ..+.|+.+.+..|.+... .-...|..+++|++|||..|.++ .+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 45788999999998766543 2 557888888888864332 12234678889999999988876 2445
Q ss_pred ccccCccCcEEEcCCCcCCCc------cc-cCCCCCCCEEEccCccCcc-----cchhhcCCCCCCEEeeccC
Q 042307 396 SLHLLVNLRTLCLDNGVLGDV------AV-IGELKQLEILSFQGSNIEQ-----LPREIGQLTRLRSLNLSSC 456 (1314)
Q Consensus 396 ~~~~l~~L~~L~L~~~~~~~~------~~-~~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~ 456 (1314)
.+..+++||.|++++|.+..- .. -...+.|++|++.+|.|+. +-..+...+.|..|+|++|
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 667788888888888887542 11 2236778888888887762 2333555677777777776
No 133
>PTZ00202 tuzin; Provisional
Probab=97.36 E-value=0.0037 Score=69.05 Aligned_cols=135 Identities=19% Similarity=0.300 Sum_probs=83.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh----c
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR----K 76 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~ 76 (1314)
+++|+|++|+||||+++.++.... + .+++++.. +..++++.++++||.... ....+....+.+.+. .
T Consensus 288 ivvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e 358 (550)
T PTZ00202 288 IVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSVVKALGVPNV-EACGDLLDFISEACRRAKKM 358 (550)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999996654 1 24445544 679999999999998432 222334444444443 3
Q ss_pred -CCeEEEEEeCCCCccccccc-----CCCCCCCCceEEEEecccccccc--ccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 77 -EKKILVILDNIWANLDLENV-----GIPFGDRGCGVLMTARSQDVLSS--KMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 77 -~~~~LlvlD~v~~~~~~~~~-----~~~~~~~~~~ilvTtr~~~~~~~--~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
+++.+||+-= .+...+..+ .......-|.|++----+.+... .++--..+-++.|+.++|.++.....
T Consensus 359 ~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 359 NGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 5666777642 222222222 12223355777764333322111 23445568889999999999887765
No 134
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.36 E-value=0.0022 Score=76.84 Aligned_cols=167 Identities=12% Similarity=0.081 Sum_probs=89.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCC--EEEEEEeccCcCHHHHHHHHHHHhCCCc-----cccChhHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFD--EVVYADVSQTPDIKKIQGQIADKLGLKF-----YEESESGRARKLCERL 74 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l 74 (1314)
+.++|+.|+||||+|+.+++......... +..+-.+.. -...+.|.+.-.... ......+.++.+....
T Consensus 49 ~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~ 124 (598)
T PRK09111 49 FMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESV 124 (598)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHH
Confidence 56899999999999999998865321110 000111111 111122222111111 0111223334444333
Q ss_pred h----cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEe-ccccccccccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 75 R----KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTA-RSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 75 ~----~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTt-r~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
. ..++-++|+|+++... ..+.+. +.-+..++++|++| ....+..........+++..++.++..+.+.+.+
T Consensus 125 ~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 125 RYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIA 204 (598)
T ss_pred HhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence 3 1456689999987663 222221 11122345655544 4444433222335678999999999999998877
Q ss_pred CCCCCCccHHHHHHHHHHHhCCcHHHHH
Q 042307 146 GDKIENNDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
...... -..+.+..|++.++|.+.-+.
T Consensus 205 ~kegi~-i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 205 AKEGVE-VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 432221 224667889999999886443
No 135
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0018 Score=76.70 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=88.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCC-------------------EEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFD-------------------EVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~-------------------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.+++..-.....+ .+++++......+
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~I------------------- 101 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGI------------------- 101 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCH-------------------
Confidence 46799999999999999998875321110 1333332211111
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCc--ccccccCCCC--CCCCceEEEEecc-ccccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWAN--LDLENVGIPF--GDRGCGVLMTARS-QDVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~--~~~~~~~~~~--~~~~~~ilvTtr~-~~~~~~~~~~~~~~~l~~l~ 133 (1314)
+.++.+.+.+. .+++-++|+|+++.. +....+.... +.....+|++|.. ..+..........+++++++
T Consensus 102 --d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs 179 (624)
T PRK14959 102 --DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLS 179 (624)
T ss_pred --HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCC
Confidence 12222222211 256779999999776 2223221111 2234455555544 44332112234578899999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcH-HHHHHHHHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLP-IAIVTIARAL 179 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 179 (1314)
.++..+.+.+.+..... .-.++.++.|++..+|.+ .|+..+...+
T Consensus 180 ~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 180 EAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999886632211 123566888999999854 6777765443
No 136
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.34 E-value=0.0026 Score=80.20 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=101.5
Q ss_pred CCCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcC-------ChhHHHHHHHHh
Q 042307 122 DCQNNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRNK-------NTFEWKNALREL 194 (1314)
Q Consensus 122 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-------~~~~w~~~~~~l 194 (1314)
...+.+.+.+|+..+.-.+.....+... ....+....|+++.+|+|+-+..+-..+... ....|..-...+
T Consensus 209 ~~i~~I~L~PL~~~d~~~lV~~~l~~~~--~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i 286 (849)
T COG3899 209 TNITTITLAPLSRADTNQLVAATLGCTK--LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL 286 (849)
T ss_pred CceeEEecCcCchhhHHHHHHHHhCCcc--cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence 4456899999999999999999997632 2234668899999999999888887777553 333444333322
Q ss_pred cCCCCCCCCCCchhhhhheeecccccCchhhHHHHHhhccccccCCcCHHHHHHhhcccccccCcCCHHHHHHHHHHHHH
Q 042307 195 TRPSSSSFSGVPAEAYKSIELSYNHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRALTLVD 274 (1314)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~f~~~~~~~fp~~~~i~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~ 274 (1314)
.. .+..+. +...+..-.+.||.. .+..+...|++ -..++.+-+...+.. -....+...++
T Consensus 287 ~~-----~~~~~~-vv~~l~~rl~kL~~~-t~~Vl~~AA~i--G~~F~l~~La~l~~~-----------~~~~~a~~l~~ 346 (849)
T COG3899 287 GI-----LATTDA-VVEFLAARLQKLPGT-TREVLKAAACI--GNRFDLDTLAALAED-----------SPALEAAALLD 346 (849)
T ss_pred CC-----chhhHH-HHHHHHHHHhcCCHH-HHHHHHHHHHh--CccCCHHHHHHHHhh-----------chHHHHHHHHH
Confidence 11 112222 444577778899998 69999999994 466666655444421 11112223344
Q ss_pred HHhhccccc-----cC-CCCcee---eechhHHHHHHHHhcc
Q 042307 275 KLKNSCLLL-----DG-PESEYF---SVHDVVRDVAISIASR 307 (1314)
Q Consensus 275 ~L~~~sll~-----~~-~~~~~~---~mH~lv~~~~~~~~~~ 307 (1314)
.|....++. +. ...... ..|+.||+.|-....+
T Consensus 347 al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 347 ALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 444444432 11 112222 6799999988655444
No 137
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.34 E-value=0.00049 Score=74.64 Aligned_cols=129 Identities=10% Similarity=0.209 Sum_probs=65.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+||||+|+.+++............++.++.. .+. ...++ .. ......+.+. ....+
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~---~~~~g-----~~-~~~~~~~~~~---a~~~V 108 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLV---GEYIG-----HT-AQKTREVIKK---ALGGV 108 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhh---hhhcc-----ch-HHHHHHHHHh---ccCCE
Confidence 578999999999999999987642211111112222221 110 01111 11 1112222222 23358
Q ss_pred EEEeCCCCcc----------cccccCCCCCC--CCceEEEEecccccc------cc-ccCCCccEEecCCCHHHHHHHHH
Q 042307 82 VILDNIWANL----------DLENVGIPFGD--RGCGVLMTARSQDVL------SS-KMDCQNNFLVGALNESEAWDLFK 142 (1314)
Q Consensus 82 lvlD~v~~~~----------~~~~~~~~~~~--~~~~ilvTtr~~~~~------~~-~~~~~~~~~l~~l~~~ea~~l~~ 142 (1314)
|++|+++... ..+.+...... ....+++++...... +. .......+.++.++.+|..+++.
T Consensus 109 L~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 109 LFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred EEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHH
Confidence 8999997532 12222111111 222444554433221 10 11223568899999999999999
Q ss_pred HHhC
Q 042307 143 KLVG 146 (1314)
Q Consensus 143 ~~~~ 146 (1314)
+.+.
T Consensus 189 ~~~~ 192 (261)
T TIGR02881 189 RMVK 192 (261)
T ss_pred HHHH
Confidence 8874
No 138
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0039 Score=73.01 Aligned_cols=154 Identities=11% Similarity=0.109 Sum_probs=85.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC-------------------CEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF-------------------DEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f-------------------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.+++..-..... ..+++++......+..+.. +.+.....
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRe-lie~~~~~----- 112 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRE-LIEQTKYK----- 112 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHH-HHHHHhhC-----
Confidence 4689999999999999999876321111 1133333222222222211 11111000
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEeccc-cccccccCCCccEEecCCCHHHH
Q 042307 63 ESGRARKLCERLRKEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQ-DVLSSKMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~-~~~~~~~~~~~~~~l~~l~~~ea 137 (1314)
-. .+++-++|+|+++... ..+.+. +.-+...+++|++|.+. .+..........+++.+++.++.
T Consensus 113 ----------P~-~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei 181 (535)
T PRK08451 113 ----------PS-MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSI 181 (535)
T ss_pred ----------cc-cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHH
Confidence 00 1466789999997662 222221 11123445666555543 33221122356889999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
.+.+.+.+..... .-.++.+..|++.++|-+.-+.
T Consensus 182 ~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 182 ISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHH
Confidence 9998877743222 1235678899999999885433
No 139
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=2.3e-05 Score=70.20 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=56.4
Q ss_pred hCCCcccEEEecCCcCCCCCcccccC-ccCcEEEcCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEe
Q 042307 375 TRLTELRVLDFTDMHLLSLPSSLHLL-VNLRTLCLDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLN 452 (1314)
Q Consensus 375 ~~l~~L~~L~Ls~n~~~~lp~~~~~l-~~L~~L~L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 452 (1314)
.+..+|...+|++|.++.+|+.|... +.+..|++++|.++++ ..+..++.|+.|+++.|.+...|.-|..|.+|-+|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 45566666777777777776665433 3566666666666554 446666666666666666666666666666666666
Q ss_pred eccCCCCCccchh
Q 042307 453 LSSCYQLKAISSN 465 (1314)
Q Consensus 453 L~~~~~l~~~~~~ 465 (1314)
..++ ....+|..
T Consensus 130 s~~n-a~~eid~d 141 (177)
T KOG4579|consen 130 SPEN-ARAEIDVD 141 (177)
T ss_pred CCCC-ccccCcHH
Confidence 6664 44455544
No 140
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0036 Score=73.42 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=84.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.++......+ .+..+++++.+....
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~g-------------------- 100 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRG-------------------- 100 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCC--------------------
Confidence 45799999999999999998754210 111233333222111
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEE-EeccccccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLM-TARSQDVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilv-Ttr~~~~~~~~~~~~~~~~l~~l~ 133 (1314)
.+.++.+..... .+++-++|+|+++... ..+.+. +..+.....+|+ |++...+..........+.+.+++
T Consensus 101 -vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls 179 (486)
T PRK14953 101 -IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPT 179 (486)
T ss_pred -HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCC
Confidence 122222222222 2567799999987652 222221 111223344444 444433332112234578899999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
.++..+.+.+.+..... ....+.+..|++.++|.+..+..
T Consensus 180 ~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 180 KEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred HHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999998887632221 22345677899999997654433
No 141
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.004 Score=70.14 Aligned_cols=168 Identities=13% Similarity=0.029 Sum_probs=89.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEE-EE---EEeccCcCHHHHHHHHHHHhCCC-------ccc-------cCh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEV-VY---ADVSQTPDIKKIQGQIADKLGLK-------FYE-------ESE 63 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~-~w---v~~~~~~~~~~~~~~i~~~l~~~-------~~~-------~~~ 63 (1314)
+.++|+.|+||+|+|..+++..--+...... +- ..+... ......+.+...-... ..+ .-.
T Consensus 44 ~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~-~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~ 122 (365)
T PRK07471 44 WLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID-PDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVIT 122 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC-CCChHHHHHHccCCCCeEEEeccccccccccccccc
Confidence 5689999999999999999887432211100 00 000000 0001112221111110 000 011
Q ss_pred hHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCC--CCCCCCceEEEEeccc-cccccccCCCccEEecCCCH
Q 042307 64 SGRARKLCERLR----KEKKILVILDNIWANL--DLENVGI--PFGDRGCGVLMTARSQ-DVLSSKMDCQNNFLVGALNE 134 (1314)
Q Consensus 64 ~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~~--~~~~~~~~ilvTtr~~-~~~~~~~~~~~~~~l~~l~~ 134 (1314)
.+.++.+.+.+. .+.+.++|+|+++... ....+.. .-+..++.+|++|.+. .+..........+.+.+++.
T Consensus 123 VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~ 202 (365)
T PRK07471 123 VDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAP 202 (365)
T ss_pred HHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCH
Confidence 233444444443 2567799999988663 2222211 1122345666666554 33332234466899999999
Q ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHH
Q 042307 135 SEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTI 175 (1314)
Q Consensus 135 ~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 175 (1314)
++..+++.+..+.. . .+....+++.++|.|.....+
T Consensus 203 ~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 203 EDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 99999998875321 1 122367899999999865443
No 142
>CHL00176 ftsH cell division protein; Validated
Probab=97.30 E-value=0.0044 Score=74.95 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=84.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||++|+.++...... .+.++.++ +... ..+ .....+..+.....+..+++
T Consensus 219 VLL~GPpGTGKT~LAralA~e~~~p-----~i~is~s~---f~~~------~~g------~~~~~vr~lF~~A~~~~P~I 278 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEVP-----FFSISGSE---FVEM------FVG------VGAARVRDLFKKAKENSPCI 278 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC-----eeeccHHH---HHHH------hhh------hhHHHHHHHHHHHhcCCCcE
Confidence 6799999999999999999876421 22222221 1110 001 11223444555555578899
Q ss_pred EEEeCCCCcc----------------cccccCCC----CCCCCceEEEEeccccccccc----cCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL----------------DLENVGIP----FGDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~----------------~~~~~~~~----~~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea 137 (1314)
|++|+++... .+..+... ....+..||.||........+ .+....+.++..+.++.
T Consensus 279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R 358 (638)
T CHL00176 279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGR 358 (638)
T ss_pred EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHH
Confidence 9999997541 01111111 122455667777664432211 12346788999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCC
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGG 167 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g 167 (1314)
.++++.++..... ........+++.+.|
T Consensus 359 ~~IL~~~l~~~~~--~~d~~l~~lA~~t~G 386 (638)
T CHL00176 359 LDILKVHARNKKL--SPDVSLELIARRTPG 386 (638)
T ss_pred HHHHHHHHhhccc--chhHHHHHHHhcCCC
Confidence 9999998854221 123345678888877
No 143
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0026 Score=70.98 Aligned_cols=149 Identities=16% Similarity=0.168 Sum_probs=86.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
.+.|+|..|.|||.|++.+++.......-..++++.. ......++..+.. ...+++.+.. .--
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~--------~~~~~Fk~~y---~~d 177 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD--------NEMEKFKEKY---SLD 177 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh--------hhHHHHHHhh---ccC
Confidence 3789999999999999999999885533345666652 3333333333321 1122333222 233
Q ss_pred EEEEeCCCCccc---cc----ccCCCCCCCCceEEEEecccccccc--------ccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 81 LVILDNIWANLD---LE----NVGIPFGDRGCGVLMTARSQDVLSS--------KMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 81 LlvlD~v~~~~~---~~----~~~~~~~~~~~~ilvTtr~~~~~~~--------~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
++++||++-... ++ ++.......|-+||+|++.....-. ++.-.-.+++.+.+.+...+++.+.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 888999865421 11 1111112345589999865431110 23334678999999999999999877
Q ss_pred CCCCCCccHHHHHHHHHHHhCC
Q 042307 146 GDKIENNDLKAVAVDIAKACGG 167 (1314)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~g 167 (1314)
..... .-.++++.-|+++...
T Consensus 258 ~~~~~-~i~~ev~~~la~~~~~ 278 (408)
T COG0593 258 EDRGI-EIPDEVLEFLAKRLDR 278 (408)
T ss_pred HhcCC-CCCHHHHHHHHHHhhc
Confidence 32211 1124455566665554
No 144
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0028 Score=76.01 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=88.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE-eccCcCHHHHHHHHHHHhCCCc-----cccChhHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD-VSQTPDIKKIQGQIADKLGLKF-----YEESESGRARKLCERLR 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~ 75 (1314)
+.++|+.|+||||+|+.+++..--....+...|.. .......-...+.+...-..+. ......+.+..+.+.+.
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~ 120 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVR 120 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHH
Confidence 56899999999999999998875322221111111 0000011111111111111110 01112333444444442
Q ss_pred ----cCCeEEEEEeCCCCccc--ccccC--CCCCCCCceEE-EEeccccccccccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 76 ----KEKKILVILDNIWANLD--LENVG--IPFGDRGCGVL-MTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 76 ----~~~~~LlvlD~v~~~~~--~~~~~--~~~~~~~~~il-vTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
.+++-++|+|+++.... .+.+. +.-+...+.+| +|++...+..........+++.+++.++....+.+.+.
T Consensus 121 ~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 121 YGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred hhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHH
Confidence 24667899999877632 22221 11122344544 44444444331233466899999999999888887663
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHH-HHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPI-AIVT 174 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~ 174 (1314)
.... .-..+.++.|++.++|..- |+..
T Consensus 201 ~egi-~I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 201 AEGI-QIDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred HcCC-CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 2111 1235668899999999554 4443
No 145
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.00066 Score=66.55 Aligned_cols=88 Identities=30% Similarity=0.198 Sum_probs=53.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
.+.|+|++|+||||+|+.++....... ..+++++.+........... ..............................
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 378999999999999999999887432 34777776654332222211 111222222223333444555555433459
Q ss_pred EEEEeCCCCcc
Q 042307 81 LVILDNIWANL 91 (1314)
Q Consensus 81 LlvlD~v~~~~ 91 (1314)
++++|+++...
T Consensus 81 viiiDei~~~~ 91 (148)
T smart00382 81 VLILDEITSLL 91 (148)
T ss_pred EEEEECCcccC
Confidence 99999998773
No 146
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0021 Score=74.27 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=88.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEe-ccCcCHHHHHHHHHHHhCCCc-----cccChhHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADV-SQTPDIKKIQGQIADKLGLKF-----YEESESGRARKLCERLR 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~ 75 (1314)
+.++|+.|+||||+|..+++...-....+...|..- ......-...+.+...-..+. ......+.+..+.+.+.
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~ 120 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVR 120 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHh
Confidence 568999999999999999988753221111111110 000000011111111111110 01111233444444442
Q ss_pred ----cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEe-ccccccccccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 76 ----KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTA-RSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 76 ----~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTt-r~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
.+++-++|+|+++... .++.+. +.-+.+.+.+|++| +...+..........+++++++.++..+.+...+.
T Consensus 121 ~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 121 YGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred hchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 2466789999987653 333321 11123355655554 44433321122245788999999999998888773
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
... ..-..+.++.|++.++|.+--
T Consensus 201 ~~g-~~i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 201 AEG-ISVDADALQLIGRKAQGSMRD 224 (397)
T ss_pred HcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 211 122356788999999997753
No 147
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.26 E-value=0.00062 Score=65.95 Aligned_cols=101 Identities=21% Similarity=0.376 Sum_probs=69.7
Q ss_pred CCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccc-cCccCcEEEcCCCcCCCc---cccCCCCCCCEE
Q 042307 353 PRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLH-LLVNLRTLCLDNGVLGDV---AVIGELKQLEIL 428 (1314)
Q Consensus 353 ~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~-~l~~L~~L~L~~~~~~~~---~~~~~L~~L~~L 428 (1314)
.+...+|++.|.. ..++. |.++..|..|.|++|.|+.+-+.+. -+++|..|.|.+|.+..+ .-+..++.|++|
T Consensus 42 d~~d~iDLtdNdl-~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccch-hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3455566666653 22222 5777888888888888887744433 456688888888876544 556778888888
Q ss_pred EccCccCcccch----hhcCCCCCCEEeeccC
Q 042307 429 SFQGSNIEQLPR----EIGQLTRLRSLNLSSC 456 (1314)
Q Consensus 429 ~L~~~~i~~lp~----~i~~L~~L~~L~L~~~ 456 (1314)
.+-+|.++.-+. -+.++++|++||..+.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 888887775432 3678899999988764
No 148
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0044 Score=75.01 Aligned_cols=155 Identities=12% Similarity=0.120 Sum_probs=87.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc---------------------ccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN---------------------DKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE 60 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~---------------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 60 (1314)
+.++|+.|+||||+|+.++..... ..+|+ +++++.+....+.++. .+.+.+....
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ld~~~~~~vd~Ir-~li~~~~~~P-- 117 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHELDAASNNSVDDIR-NLIEQVRIPP-- 117 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEecccccCCHHHHH-HHHHHHhhCc--
Confidence 568999999999999999887631 12233 3333333222222221 1112111110
Q ss_pred cChhHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEE-EEeccccccccccCCCccEEecCCCHH
Q 042307 61 ESESGRARKLCERLRKEKKILVILDNIWANL--DLENVG--IPFGDRGCGVL-MTARSQDVLSSKMDCQNNFLVGALNES 135 (1314)
Q Consensus 61 ~~~~~~~~~~~~~l~~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~il-vTtr~~~~~~~~~~~~~~~~l~~l~~~ 135 (1314)
. .+++-++|+|+++... ..+.+. +.-+..++.+| +|++...+..........+++.+++.+
T Consensus 118 -------------~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ 183 (614)
T PRK14971 118 -------------Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVA 183 (614)
T ss_pred -------------c-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHH
Confidence 0 1456688999988763 233221 11122345554 455555444422344667999999999
Q ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH-HHHHH
Q 042307 136 EAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 136 ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 175 (1314)
+..+.+.+.+..... ....+.+..|++.++|-.. |+..+
T Consensus 184 ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 184 DIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999887643222 1224567899999998654 44433
No 149
>CHL00181 cbbX CbbX; Provisional
Probab=97.25 E-value=0.0064 Score=66.31 Aligned_cols=126 Identities=10% Similarity=0.113 Sum_probs=68.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC--CEEEEEEeccCcCHHHHHHHHHHHh-CCCccccChhHHHHHHHHHHhcCC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF--DEVVYADVSQTPDIKKIQGQIADKL-GLKFYEESESGRARKLCERLRKEK 78 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~l~~~~ 78 (1314)
|.++|++|+||||+|+.+++.......- ..++.++ . . .+...+ +.. . .....+.+. ..
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~--~----~----~l~~~~~g~~-----~-~~~~~~l~~---a~ 122 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT--R----D----DLVGQYIGHT-----A-PKTKEVLKK---AM 122 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec--H----H----HHHHHHhccc-----h-HHHHHHHHH---cc
Confidence 6789999999999999998876432111 1233333 1 1 122211 211 1 111222222 23
Q ss_pred eEEEEEeCCCCc-----------ccccccCC--CCCCCCceEEEEecccccc------c-cccCCCccEEecCCCHHHHH
Q 042307 79 KILVILDNIWAN-----------LDLENVGI--PFGDRGCGVLMTARSQDVL------S-SKMDCQNNFLVGALNESEAW 138 (1314)
Q Consensus 79 ~~LlvlD~v~~~-----------~~~~~~~~--~~~~~~~~ilvTtr~~~~~------~-~~~~~~~~~~l~~l~~~ea~ 138 (1314)
.-+|++|+++.. +..+.+.. .....+..||+++....+. + ...+....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 358999999753 11111111 1112345666666543321 1 01234567999999999999
Q ss_pred HHHHHHhC
Q 042307 139 DLFKKLVG 146 (1314)
Q Consensus 139 ~l~~~~~~ 146 (1314)
+++...+.
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99988873
No 150
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00049 Score=66.64 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=62.2
Q ss_pred CcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc-cccCC-CCCCCEEEccCccCcccc--hhhcCCCCCCEEee
Q 042307 378 TELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV-AVIGE-LKQLEILSFQGSNIEQLP--REIGQLTRLRSLNL 453 (1314)
Q Consensus 378 ~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~~~-L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L 453 (1314)
.....+||++|.+..++ .|.++..|.+|.+.+|.|..+ +.++. +++|..|.|.+|+|.++- ..+..++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34556777777766553 356677777777777777766 44443 455777777777776552 22456677777777
Q ss_pred ccCCCCCcc---chhhhcCCCCCcEEEcCC
Q 042307 454 SSCYQLKAI---SSNVISNLSQLEELYLGD 480 (1314)
Q Consensus 454 ~~~~~l~~~---~~~~l~~l~~L~~L~l~~ 480 (1314)
-+| .+... ..-++.++++|+.||+..
T Consensus 121 l~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCC-chhcccCceeEEEEecCcceEeehhh
Confidence 665 22221 223356677777777654
No 151
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0043 Score=73.90 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=87.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC---------------------CEEEEEEeccCcCHHHHHHHHHHHhCCCccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF---------------------DEVVYADVSQTPDIKKIQGQIADKLGLKFYE 60 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f---------------------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 60 (1314)
+.++|+.|+||||+|+.++....-.+.. ..+++++.+....
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~g------------------ 99 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGG------------------ 99 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccC------------------
Confidence 4689999999999999999876521111 1123333222111
Q ss_pred cChhHHHHHHHHHHh----cCCeEEEEEeCCCCc--ccccccC--CCCCCCCce-EEEEeccccccccccCCCccEEecC
Q 042307 61 ESESGRARKLCERLR----KEKKILVILDNIWAN--LDLENVG--IPFGDRGCG-VLMTARSQDVLSSKMDCQNNFLVGA 131 (1314)
Q Consensus 61 ~~~~~~~~~~~~~l~----~~~~~LlvlD~v~~~--~~~~~~~--~~~~~~~~~-ilvTtr~~~~~~~~~~~~~~~~l~~ 131 (1314)
.+.++.+..... .+++-++|+|+++.. ...+.+. +.-+...+. |++||....+..........+++..
T Consensus 100 ---vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~ 176 (584)
T PRK14952 100 ---VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRL 176 (584)
T ss_pred ---HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeC
Confidence 222222222221 246678999998765 2222221 111223444 4455555544432123356799999
Q ss_pred CCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH-HHHHHHH
Q 042307 132 LNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI-AIVTIAR 177 (1314)
Q Consensus 132 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 177 (1314)
++.++..+.+.+.+..... ....+.+..|++..+|-+. |+..+-.
T Consensus 177 l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 177 LPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999998887642221 1224567788999999764 5555443
No 152
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.23 E-value=0.0045 Score=71.34 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=86.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc--------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK--------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE 61 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 61 (1314)
+.++|+.|+||||+|+.++....... +++ +++++........+ .+.+.+.+....
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~~~p--- 113 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEIDAASNNGVDD-IREILDNVKYAP--- 113 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeeccccCCHHH-HHHHHHHHhcCc---
Confidence 46899999999999999998864221 222 23333322112111 122222211000
Q ss_pred ChhHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHH
Q 042307 62 SESGRARKLCERLRKEKKILVILDNIWAN--LDLENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESE 136 (1314)
Q Consensus 62 ~~~~~~~~~~~~l~~~~~~LlvlD~v~~~--~~~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~e 136 (1314)
. .+++-++|+|+++.. .....+. +..+...+.+|++|.+.. +..........+++.+++.++
T Consensus 114 ------------~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~ 180 (355)
T TIGR02397 114 ------------S-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLED 180 (355)
T ss_pred ------------c-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHH
Confidence 0 145568899998765 2222221 111223556666665443 222112234578889999999
Q ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHH
Q 042307 137 AWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTI 175 (1314)
Q Consensus 137 a~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 175 (1314)
..+.+..++..... .-.++.+..+++.++|.|..+...
T Consensus 181 l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 181 IVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHH
Confidence 99999887732221 122467888999999988655443
No 153
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.22 E-value=0.0038 Score=64.67 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=28.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADV 37 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~ 37 (1314)
++|.|.+|+||||++..+..... +.|++++++.-
T Consensus 16 ~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 68999999999999999998876 45888877754
No 154
>PRK08116 hypothetical protein; Validated
Probab=97.22 E-value=0.001 Score=71.73 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=57.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|..|+|||.||..+++....+ -..++|+++ .++...+.+.+.... ......+.+.+. +. =|
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~-----~~~~~~~~~~l~-~~-dl 181 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSG-----KEDENEIIRSLV-NA-DL 181 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhccc-----cccHHHHHHHhc-CC-CE
Confidence 6799999999999999999998743 345777763 334445544443211 111233444454 23 38
Q ss_pred EEEeCCCC--cccccc--cCCCC---CCCCceEEEEeccc
Q 042307 82 VILDNIWA--NLDLEN--VGIPF---GDRGCGVLMTARSQ 114 (1314)
Q Consensus 82 lvlD~v~~--~~~~~~--~~~~~---~~~~~~ilvTtr~~ 114 (1314)
|||||+.. ..+|.. +.... ...+..+||||...
T Consensus 182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 99999953 233322 11011 12456788888764
No 155
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.22 E-value=0.004 Score=77.43 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=84.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC---------------------CCEEEEEEeccCcCHHHHHHHHHHHhCCCccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL---------------------FDEVVYADVSQTPDIKKIQGQIADKLGLKFYE 60 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~---------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 60 (1314)
+.++|+.|+||||+|+.+++...-.+. ...+++++......+
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~V----------------- 102 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGV----------------- 102 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCH-----------------
Confidence 568999999999999999988752111 111333333222122
Q ss_pred cChhHHHHHHHHHHh----cCCeEEEEEeCCCCc--ccccccC--CCCCCCCceEEEEe-ccccccccccCCCccEEecC
Q 042307 61 ESESGRARKLCERLR----KEKKILVILDNIWAN--LDLENVG--IPFGDRGCGVLMTA-RSQDVLSSKMDCQNNFLVGA 131 (1314)
Q Consensus 61 ~~~~~~~~~~~~~l~----~~~~~LlvlD~v~~~--~~~~~~~--~~~~~~~~~ilvTt-r~~~~~~~~~~~~~~~~l~~ 131 (1314)
+.++.+.+.+. .+++-++|||+++.. ...+.+. +.-....+.+|++| +...+..........|++..
T Consensus 103 ----d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~ 178 (824)
T PRK07764 103 ----DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRL 178 (824)
T ss_pred ----HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeC
Confidence 22222222211 256678899999876 2222221 11112345555444 44444331223456789999
Q ss_pred CCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH
Q 042307 132 LNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 132 l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
++.++..+.+.+.+...... ...+.+..|++.++|.+.
T Consensus 179 l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 179 VPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 99999999988876322221 224556789999999774
No 156
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.21 E-value=0.0029 Score=73.88 Aligned_cols=147 Identities=17% Similarity=0.149 Sum_probs=82.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||.+|+.+++.+... .+-++.+. +.. ...+. ....+..+.+......+++
T Consensus 262 ILL~GPpGTGKTllAkaiA~e~~~~-----~~~l~~~~----------l~~----~~vGe-se~~l~~~f~~A~~~~P~I 321 (489)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANDWQLP-----LLRLDVGK----------LFG----GIVGE-SESRMRQMIRIAEALSPCI 321 (489)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC-----EEEEEhHH----------hcc----cccCh-HHHHHHHHHHHHHhcCCcE
Confidence 6799999999999999999987632 22233221 110 11111 1233444444445568999
Q ss_pred EEEeCCCCccc----c----------cccCCCC--CCCCceEEEEeccccccccc----cCCCccEEecCCCHHHHHHHH
Q 042307 82 VILDNIWANLD----L----------ENVGIPF--GDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 82 lvlD~v~~~~~----~----------~~~~~~~--~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea~~l~ 141 (1314)
+++|+++..-. . ..+.... ...+.-||.||.+......+ .+....+.++.-+.++..++|
T Consensus 322 L~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il 401 (489)
T CHL00195 322 LWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIF 401 (489)
T ss_pred EEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHH
Confidence 99999985411 0 0000000 11233466677665432211 234567889989999999999
Q ss_pred HHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 142 KKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
..+................+++...|.
T Consensus 402 ~~~l~~~~~~~~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 402 KIHLQKFRPKSWKKYDIKKLSKLSNKF 428 (489)
T ss_pred HHHHhhcCCCcccccCHHHHHhhcCCC
Confidence 988854221111112244666666655
No 157
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.016 Score=64.06 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=105.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCC-CccccChhHHHHHHHHHHhcCC-e
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGL-KFYEESESGRARKLCERLRKEK-K 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~l~~~~-~ 79 (1314)
+.|.|-+|.|||.+...++.+......-..++++++..-.....++..|...+-. ......+.+...++.....+.+ .
T Consensus 178 lYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~ 257 (529)
T KOG2227|consen 178 LYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFM 257 (529)
T ss_pred eEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccce
Confidence 5789999999999999999887743222246888887766777777777776621 1111222444566666666544 7
Q ss_pred EEEEEeCCCCcc-----cccccCCCCC-CCCceEEEEecccc------cccc----ccCCCccEEecCCCHHHHHHHHHH
Q 042307 80 ILVILDNIWANL-----DLENVGIPFG-DRGCGVLMTARSQD------VLSS----KMDCQNNFLVGALNESEAWDLFKK 143 (1314)
Q Consensus 80 ~LlvlD~v~~~~-----~~~~~~~~~~-~~~~~ilvTtr~~~------~~~~----~~~~~~~~~l~~l~~~ea~~l~~~ 143 (1314)
+++|+|.+|... .+-.+ +.|+ -+++++|+.--... .... ..-....+..++++.++-++++..
T Consensus 258 ~llVlDEmD~L~tr~~~vLy~l-Fewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~ 336 (529)
T KOG2227|consen 258 LLLVLDEMDHLITRSQTVLYTL-FEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQ 336 (529)
T ss_pred EEEEechhhHHhhcccceeeee-hhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHH
Confidence 999999987652 12122 2222 25566554321111 1110 011234566789999999999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHhCC----cHHHHHHHHHH
Q 042307 144 LVGDKIENNDLKAVAVDIAKACGG----LPIAIVTIARA 178 (1314)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~~~~g----~Plai~~~~~~ 178 (1314)
+............+++.+|+++.| +-.|+.+.-+.
T Consensus 337 rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 337 RLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred HHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 885433333333455556666644 55555554433
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.006 Score=67.75 Aligned_cols=147 Identities=12% Similarity=0.154 Sum_probs=84.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc--------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK--------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE 61 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 61 (1314)
+.++|+.|+|||++|+.++...--.. |.| +.|+.-.... ..
T Consensus 25 ~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~------------------~~ 85 (328)
T PRK05707 25 YLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEAD------------------KT 85 (328)
T ss_pred eeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCC------------------CC
Confidence 46899999999999999998875321 111 2222211000 00
Q ss_pred ChhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccc----cCCCCCCCCceEEEEeccc-cccccccCCCccEEec
Q 042307 62 SESGRARKLCERLR----KEKKILVILDNIWANL--DLEN----VGIPFGDRGCGVLMTARSQ-DVLSSKMDCQNNFLVG 130 (1314)
Q Consensus 62 ~~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~----~~~~~~~~~~~ilvTtr~~-~~~~~~~~~~~~~~l~ 130 (1314)
-..+.++.+.+.+. .+++-++|+|+++... .... +.-| ..++.+|+||.+. .+.+.-..-...+.+.
T Consensus 86 i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 86 IKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred CCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 12233344444333 1345556779998762 2222 2222 2455666666554 4433223335678999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 131 ALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 131 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
+++.+++.+.+.+..+. . ..+.+..++..++|.|.....
T Consensus 164 ~~~~~~~~~~L~~~~~~-~----~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 164 LPSNEESLQWLQQALPE-S----DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred CcCHHHHHHHHHHhccc-C----ChHHHHHHHHHcCCCHHHHHH
Confidence 99999999999876421 1 133456788999999975443
No 159
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.17 E-value=3.8e-05 Score=68.89 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=86.8
Q ss_pred ccEEEcccCCCcccCCCc----CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEc
Q 042307 333 CTAISLHNCKIGELVDGL----ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCL 408 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L 408 (1314)
+..++|+.+.+..+++.. ....|+..++++|.+ ..+|+.+-.+++.+..|++++|.+..+|..+..++.||.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 445777888776665543 566778888988874 667777666677889999999999999999999999999999
Q ss_pred CCCcCCC-ccccCCCCCCCEEEccCccCcccchh
Q 042307 409 DNGVLGD-VAVIGELKQLEILSFQGSNIEQLPRE 441 (1314)
Q Consensus 409 ~~~~~~~-~~~~~~L~~L~~L~L~~~~i~~lp~~ 441 (1314)
+.|.+.. +..+..|.+|-+|+..+|.+..+|.+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9999765 47777799999999999988888765
No 160
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0064 Score=73.56 Aligned_cols=166 Identities=13% Similarity=0.035 Sum_probs=87.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCc-----cccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKF-----YEESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~- 75 (1314)
+.++|+.|+||||+|+.+++..-...... ...-.++ .-...+.+........ ......+.++.+.....
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~~~~Cg----~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~ 115 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKSLNCLNSDK-PTPEPCG----KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF 115 (620)
T ss_pred EEEECCCCCChHHHHHHHHHHhcCCCcCC-CCCCCCc----ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh
Confidence 46899999999999999999875321111 0000111 1122222222221111 01122233344443332
Q ss_pred ---cCCeEEEEEeCCCCcc--cccccCCCC--CCCCceEE-EEeccccccccccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 76 ---KEKKILVILDNIWANL--DLENVGIPF--GDRGCGVL-MTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 76 ---~~~~~LlvlD~v~~~~--~~~~~~~~~--~~~~~~il-vTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
.+++-++|+|+++... ..+.+.... +...+.+| +|+....+..........+++..++.++..+.+.+.+..
T Consensus 116 ~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 116 APVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred ChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence 1456789999998662 233331111 12234444 444444333312233567888899999988888876643
Q ss_pred CCCCccHHHHHHHHHHHhCCcHHHHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
.... -..+.+..|++.++|.+..+.
T Consensus 196 egi~-is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 196 ESIE-IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 2211 123567899999999775433
No 161
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0069 Score=69.78 Aligned_cols=151 Identities=12% Similarity=0.108 Sum_probs=82.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc------cCCCE-EEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND------KLFDE-VVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERL 74 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~------~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l 74 (1314)
+.++|+.|+||||+|+.+++..... ..|.. ++.++.....+... .+.+.+.+... ..
T Consensus 42 ~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~l~~~~~~~---------------p~ 105 (367)
T PRK14970 42 LLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRNLIDQVRIP---------------PQ 105 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHHHHHHHhhc---------------cc
Confidence 5689999999999999998876431 11211 22222211111211 11222221100 00
Q ss_pred hcCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEe-ccccccccccCCCccEEecCCCHHHHHHHHHHHhCCCC
Q 042307 75 RKEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTA-RSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKI 149 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTt-r~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 149 (1314)
.+++-++|+|+++... .++.+. ..-+...+.+|++| +...+..........+++++++.++....+...+....
T Consensus 106 -~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 106 -TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred -cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcC
Confidence 1455689999987652 233321 11122344555554 33333331223345789999999999998887663222
Q ss_pred CCccHHHHHHHHHHHhCCcHH
Q 042307 150 ENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 150 ~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
. .-..+.++.+++.++|-+-
T Consensus 185 ~-~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 185 I-KFEDDALHIIAQKADGALR 204 (367)
T ss_pred C-CCCHHHHHHHHHhCCCCHH
Confidence 1 1225678889999998654
No 162
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.13 E-value=0.0028 Score=69.74 Aligned_cols=88 Identities=11% Similarity=0.216 Sum_probs=59.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCE-EEEEEeccC-cCHHHHHHHHHHHhCCCccccChhHH------HHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDE-VVYADVSQT-PDIKKIQGQIADKLGLKFYEESESGR------ARKLCER 73 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~------~~~~~~~ 73 (1314)
+.|+|.+|+|||||++++++..... +-+. ++|+-+.+. ..+.++.+.+...+.....+...... .....++
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999887643 2233 567777654 47888888888877654332222221 1233333
Q ss_pred Hh-cCCeEEEEEeCCCCc
Q 042307 74 LR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 74 l~-~~~~~LlvlD~v~~~ 90 (1314)
+. ++++++||+|++...
T Consensus 215 f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 215 LVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHcCCCEEEEEeCcHHH
Confidence 33 489999999997543
No 163
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0077 Score=68.40 Aligned_cols=142 Identities=18% Similarity=0.277 Sum_probs=84.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.|||.||+.++.+..+- ++.++.. +|...+.. ...+.++.+.+.-....+++
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp--------eivSGvSG-----ESEkkiRelF~~A~~~aPci 285 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP--------EIVSGVSG-----ESEKKIRELFDQAKSNAPCI 285 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch--------hhhcccCc-----ccHHHHHHHHHHHhccCCeE
Confidence 6799999999999999999998743 3333332 23333322 23456677777777789999
Q ss_pred EEEeCCCCcc---cc-----------------cccCCCCCCCCceEEE---Eecccccccc---ccCCCccEEecCCCHH
Q 042307 82 VILDNIWANL---DL-----------------ENVGIPFGDRGCGVLM---TARSQDVLSS---KMDCQNNFLVGALNES 135 (1314)
Q Consensus 82 lvlD~v~~~~---~~-----------------~~~~~~~~~~~~~ilv---Ttr~~~~~~~---~~~~~~~~~l~~l~~~ 135 (1314)
+++|+++... ++ +.+... ...|-.||| |+|...+.+. +.+..+.|.+..-++.
T Consensus 286 vFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~ 364 (802)
T KOG0733|consen 286 VFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE-KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSET 364 (802)
T ss_pred EEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc-ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchH
Confidence 9999998651 11 111111 112333443 3444443331 2334567888888888
Q ss_pred HHHHHHHHHhC-CCCC-CccHHHHHHHHHHHhCCc
Q 042307 136 EAWDLFKKLVG-DKIE-NNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 136 ea~~l~~~~~~-~~~~-~~~~~~~~~~i~~~~~g~ 168 (1314)
+..+++...+. -..+ +-+ .++||+...|.
T Consensus 365 aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 365 AREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred HHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 88888877773 1111 122 45677777665
No 164
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.12 E-value=0.0056 Score=73.24 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=84.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||++|+.++...... | +.++.+ +.... ..+ .....+..+........+.+
T Consensus 91 iLL~GppGtGKT~la~alA~~~~~~--~---~~i~~~------~~~~~---~~g------~~~~~l~~~f~~a~~~~p~I 150 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEAGVP--F---FSISGS------DFVEM---FVG------VGASRVRDLFEQAKKNAPCI 150 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC--e---eeccHH------HHHHH---Hhc------ccHHHHHHHHHHHHhcCCCE
Confidence 5789999999999999999876421 1 222211 11110 011 11223444555544467789
Q ss_pred EEEeCCCCccc----------------ccccCCC----CCCCCceEEEEeccccccccc----cCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LENVGIP----FGDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~~~~----~~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea 137 (1314)
|++|+++.... +..+... ....+..||.||........+ .+....+.++..+.++.
T Consensus 151 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGR 230 (495)
T ss_pred EEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHH
Confidence 99999976410 0011000 112344566667654422211 13456788999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCc-HHHHHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGL-PIAIVTI 175 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 175 (1314)
.+++..+........ ......+++.+.|. +-.|..+
T Consensus 231 ~~il~~~l~~~~~~~--~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 231 EEILKVHAKNKKLAP--DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred HHHHHHHHhcCCCCc--chhHHHHHHhCCCCCHHHHHHH
Confidence 999998875322211 12245788888774 4444433
No 165
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.013 Score=59.69 Aligned_cols=171 Identities=17% Similarity=0.163 Sum_probs=99.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec-cCcCHHHHHHHHHHHhCCCccccChhHHH----HHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS-QTPDIKKIQGQIADKLGLKFYEESESGRA----RKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~----~~~~~~l~ 75 (1314)
+++++|.-|+|||.+++....-...+ .++-|.+. ...+...+...++..+..+.. ....... ..+.....
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~-~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPK-VNVNAVLEQIDRELAALVK 127 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHHH
Confidence 47899999999999999554444322 22223333 344566777788888776322 1122222 23333334
Q ss_pred cCCe-EEEEEeCCCCc--ccccccC------CCCCCCCceEEEEecccccc--------ccccCCCccEEecCCCHHHHH
Q 042307 76 KEKK-ILVILDNIWAN--LDLENVG------IPFGDRGCGVLMTARSQDVL--------SSKMDCQNNFLVGALNESEAW 138 (1314)
Q Consensus 76 ~~~~-~LlvlD~v~~~--~~~~~~~------~~~~~~~~~ilvTtr~~~~~--------~~~~~~~~~~~l~~l~~~ea~ 138 (1314)
++++ ..+++|+..+. +.++.++ .....+ -+|+..-..+--. ....+..-.|++++++.++..
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 5666 99999998765 2233221 111111 2233333322111 101112223899999999999
Q ss_pred HHHHHHhCC--CCCCccHHHHHHHHHHHhCCcHHHHHHHHH
Q 042307 139 DLFKKLVGD--KIENNDLKAVAVDIAKACGGLPIAIVTIAR 177 (1314)
Q Consensus 139 ~l~~~~~~~--~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 177 (1314)
.+++.+.+. ...+--..+....|..+..|.|.+|..++.
T Consensus 207 ~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 207 LYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999888832 222333456678999999999999988765
No 166
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.11 E-value=0.0049 Score=67.34 Aligned_cols=127 Identities=11% Similarity=0.105 Sum_probs=67.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCC--EEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFD--EVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
|.++|++|+|||++|+.+++......... .++.++. . .+...+.. ... .....+ +.+...
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~------~----~l~~~~~g----~~~-~~~~~~---~~~a~~ 122 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR------D----DLVGQYIG----HTA-PKTKEI---LKRAMG 122 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH------H----HHhHhhcc----cch-HHHHHH---HHHccC
Confidence 67899999999999988887765322221 2333332 1 12222111 111 112222 222234
Q ss_pred EEEEEeCCCCc-----------ccccccC--CCCCCCCceEEEEecccccccc-------ccCCCccEEecCCCHHHHHH
Q 042307 80 ILVILDNIWAN-----------LDLENVG--IPFGDRGCGVLMTARSQDVLSS-------KMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 80 ~LlvlD~v~~~-----------~~~~~~~--~~~~~~~~~ilvTtr~~~~~~~-------~~~~~~~~~l~~l~~~ea~~ 139 (1314)
-+|++|+++.. +..+.+. +.....+.+||+++........ .......+.+++++.+|..+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68899998733 1111111 1112234566666644322110 11224679999999999999
Q ss_pred HHHHHhC
Q 042307 140 LFKKLVG 146 (1314)
Q Consensus 140 l~~~~~~ 146 (1314)
++...+.
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9988773
No 167
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.11 E-value=0.0056 Score=74.45 Aligned_cols=110 Identities=14% Similarity=0.010 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCc--ccccccCCCCC--CCCceEEE--Eeccccccccc-cCCCccEEecCCCHHHHHH
Q 042307 67 ARKLCERLRKEKKILVILDNIWAN--LDLENVGIPFG--DRGCGVLM--TARSQDVLSSK-MDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 67 ~~~~~~~l~~~~~~LlvlD~v~~~--~~~~~~~~~~~--~~~~~ilv--Ttr~~~~~~~~-~~~~~~~~l~~l~~~ea~~ 139 (1314)
...+.+.+. .+++.++-|+.|.. ..|+.+...+. .+...+++ ||++....... ......+.+.+++.+|.++
T Consensus 282 Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 282 QNKLLKVLE-DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHh-hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 344555554 55666665544432 22443322222 22333444 55644322111 1223467889999999999
Q ss_pred HHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHH
Q 042307 140 LFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARA 178 (1314)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 178 (1314)
++.+.+..... .-.+++.+.|++....-+.|+..++..
T Consensus 361 Il~~~a~~~~v-~ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINV-HLAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 99998753211 112455566666665556777766544
No 168
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0085 Score=59.74 Aligned_cols=124 Identities=23% Similarity=0.287 Sum_probs=76.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.|||-||+.+++... +.||.++...- ++.-| | .....+..+.-..++.-+.+
T Consensus 184 vlLygppgtGktLlaraVahht~-------c~firvsgsel---vqk~i----g------egsrmvrelfvmarehapsi 243 (404)
T KOG0728|consen 184 VLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGSEL---VQKYI----G------EGSRMVRELFVMAREHAPSI 243 (404)
T ss_pred eEEecCCCCchhHHHHHHHhhcc-------eEEEEechHHH---HHHHh----h------hhHHHHHHHHHHHHhcCCce
Confidence 57899999999999999997754 55677766421 11111 1 11233344444444567889
Q ss_pred EEEeCCCCccc--------------------ccccCCCCCCCCceEEEEecccccccc----ccCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD--------------------LENVGIPFGDRGCGVLMTARSQDVLSS----KMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~--------------------~~~~~~~~~~~~~~ilvTtr~~~~~~~----~~~~~~~~~l~~l~~~ea 137 (1314)
|.+|.+++... +.++.---..+.-+||+.|..-++... ..+....++.++-+++..
T Consensus 244 ifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar 323 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEAR 323 (404)
T ss_pred EeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHH
Confidence 99999876510 111100001256689998888776543 123455678888888877
Q ss_pred HHHHHHHh
Q 042307 138 WDLFKKLV 145 (1314)
Q Consensus 138 ~~l~~~~~ 145 (1314)
.++++-+.
T Consensus 324 ~~ilkihs 331 (404)
T KOG0728|consen 324 LDILKIHS 331 (404)
T ss_pred HHHHHHhh
Confidence 78877665
No 169
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.008 Score=73.10 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=87.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc-----ccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFY-----EESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~- 75 (1314)
+.++|+.|+||||+|+.+++.......... +-.+ ......+.+......... .....+.+..+.+.+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--~~~c----~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~ 114 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAVNCTTNDPK--GRPC----GTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQF 114 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCCC----ccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhh
Confidence 468999999999999999987642111000 0000 111122222222111110 0111222333333222
Q ss_pred ---cCCeEEEEEeCCCCc--ccccccCC--CCCCCCceEEEEecc-ccccccccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 76 ---KEKKILVILDNIWAN--LDLENVGI--PFGDRGCGVLMTARS-QDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 76 ---~~~~~LlvlD~v~~~--~~~~~~~~--~~~~~~~~ilvTtr~-~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
..++-++|+|+++.. +..+.+.. ......+.+|++|.+ ..+..........+++..++.++..+.+.+.+..
T Consensus 115 ~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 115 RPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred CcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH
Confidence 146778999998765 22333311 112234566655543 3333211223457888999999999998887743
Q ss_pred CCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
.... -..+.+..|++.++|.+..+..
T Consensus 195 egl~-i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 195 EGIN-LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred cCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 2211 2246688999999998864443
No 170
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.07 E-value=0.012 Score=63.26 Aligned_cols=138 Identities=17% Similarity=0.191 Sum_probs=87.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhC-CCccccChh---HHHHHHHHHHh--
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLG-LKFYEESES---GRARKLCERLR-- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~---~~~~~~~~~l~-- 75 (1314)
|.|.|-+|+|||.+.+++.+.... ..+|+++-+.++.+.....|+...+ ...++.... +....+...+.
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 579999999999999999988842 3679999999999999999999985 222221111 22222222222
Q ss_pred -----cCCeEEEEEeCCCCcccccccCCC--------CCCCCceEEEEecccc--ccccccCCCcc--EEecCCCHHHHH
Q 042307 76 -----KEKKILVILDNIWANLDLENVGIP--------FGDRGCGVLMTARSQD--VLSSKMDCQNN--FLVGALNESEAW 138 (1314)
Q Consensus 76 -----~~~~~LlvlD~v~~~~~~~~~~~~--------~~~~~~~ilvTtr~~~--~~~~~~~~~~~--~~l~~l~~~ea~ 138 (1314)
.++.++||+||++...+.++...+ ...+. -+|+++-... .....++...+ +..+..+.+|..
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~-i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~ 186 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPT-IVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQ 186 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCc-eEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHH
Confidence 146899999999887665544221 11233 3344433322 11112344443 445889999999
Q ss_pred HHHHHHh
Q 042307 139 DLFKKLV 145 (1314)
Q Consensus 139 ~l~~~~~ 145 (1314)
+++.+.-
T Consensus 187 ~Il~~~~ 193 (438)
T KOG2543|consen 187 VILSRDN 193 (438)
T ss_pred HHHhcCC
Confidence 9987654
No 171
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.06 E-value=0.018 Score=59.09 Aligned_cols=91 Identities=15% Similarity=0.265 Sum_probs=53.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh-cCCeE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR-KEKKI 80 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~ 80 (1314)
|.+||..|+|||++++.+.+....+. =+++-|.-.+-.+ +..+...+. ...+|
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~------------------------l~~l~~~l~~~~~kF 108 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGD------------------------LPELLDLLRDRPYKF 108 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhcc------------------------HHHHHHHHhcCCCCE
Confidence 67899999999999999999987543 1344443222212 223333333 26899
Q ss_pred EEEEeCCCCc---ccccccC------CCCCCCCceEEEEeccccccc
Q 042307 81 LVILDNIWAN---LDLENVG------IPFGDRGCGVLMTARSQDVLS 118 (1314)
Q Consensus 81 LlvlD~v~~~---~~~~~~~------~~~~~~~~~ilvTtr~~~~~~ 118 (1314)
+|.+||..-. .....+. +.....+..|-.||..++..+
T Consensus 109 Ilf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 109 ILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred EEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 9999997533 1222221 111113445666777776555
No 172
>PRK07261 topology modulation protein; Provisional
Probab=97.06 E-value=0.0021 Score=64.25 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=25.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc-cCCCEEEEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND-KLFDEVVYA 35 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~-~~f~~~~wv 35 (1314)
|+|+|++|+||||+|++++...... -+.|.+.|-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 7899999999999999998776432 234556653
No 173
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0079 Score=66.99 Aligned_cols=139 Identities=21% Similarity=0.315 Sum_probs=82.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh---cCC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR---KEK 78 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~---~~~ 78 (1314)
+.+.|++|+|||+||.+++.... |..|--++..+-.. -++.....++.+... +..
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~miG------------------~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMIG------------------LSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred EEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHccC------------------ccHHHHHHHHHHHHHHhhcCc
Confidence 57899999999999999998865 77655443222111 112223333333333 356
Q ss_pred eEEEEEeCCCCcccccccCCCCCC---------------CCce--EEEEeccccccccccC----CCccEEecCCCH-HH
Q 042307 79 KILVILDNIWANLDLENVGIPFGD---------------RGCG--VLMTARSQDVLSSKMD----CQNNFLVGALNE-SE 136 (1314)
Q Consensus 79 ~~LlvlD~v~~~~~~~~~~~~~~~---------------~~~~--ilvTtr~~~~~~~~~~----~~~~~~l~~l~~-~e 136 (1314)
--.||+||++..-+|-.++-.+.+ +|-| |+-||..+.+.. .++ ....+.++.++. ++
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccCchHH
Confidence 678999999988887776432222 3444 444565565555 233 245678888887 66
Q ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHh
Q 042307 137 AWDLFKKLVGDKIENNDLKAVAVDIAKAC 165 (1314)
Q Consensus 137 a~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 165 (1314)
..+.+...- ...+.+.+..+.+...++
T Consensus 678 ~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 678 LLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 666666542 223444455555655555
No 174
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00028 Score=72.09 Aligned_cols=61 Identities=25% Similarity=0.283 Sum_probs=36.0
Q ss_pred CCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCC-----CCcccccccceeEEEEcc
Q 042307 469 NLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVL-----PKGFLSQKLKRYKVFIGD 540 (1314)
Q Consensus 469 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~l~~~~~~ 540 (1314)
.++.+-.|+|+.+.+. +.+.+.++..+++|+.|.++.+.+... +..+..+.|..+.+.+|+
T Consensus 222 ~~p~~~~LnL~~~~id-----------swasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNID-----------SWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCcchhhhhcccccc-----------cHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 3444556666666653 255677888888888888876654322 122244555555555554
No 175
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.02 E-value=0.0094 Score=69.62 Aligned_cols=98 Identities=9% Similarity=0.082 Sum_probs=57.9
Q ss_pred CCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEec-cccccccccCCCccEEecCCCHHHHHHHHHHHhCCCCCC
Q 042307 77 EKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTAR-SQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKIEN 151 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr-~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 151 (1314)
+.+-++|+|+++... ..+.+. +.-+..++.+|++|. ...+..........+++.+++.++..+.+.+.+.....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~- 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI- 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 567789999987652 222221 111223455655553 33333312233567899999999999988877632211
Q ss_pred ccHHHHHHHHHHHhCCcHH-HHHHH
Q 042307 152 NDLKAVAVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 152 ~~~~~~~~~i~~~~~g~Pl-ai~~~ 175 (1314)
.-..+.++.|++.++|.+. |+..+
T Consensus 199 ~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 199 ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1235678899999999664 44443
No 176
>PRK08118 topology modulation protein; Reviewed
Probab=97.00 E-value=0.0014 Score=65.20 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=28.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc-cCCCEEEEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND-KLFDEVVYA 35 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~-~~f~~~~wv 35 (1314)
|.|+|++|+||||+|+++++..... .+||.++|-
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 7899999999999999999997754 457777763
No 177
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.98 E-value=0.0015 Score=73.52 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=55.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc--CCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK--EKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~~ 79 (1314)
|.+.|++|+|||++|+++++.......++.+.||.+++..+......-+.- .+....- ......++.....+ .++
T Consensus 197 iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vgy~~--~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 197 IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVGFRR--KDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCCeEe--cCchHHHHHHHHHhcccCC
Confidence 678999999999999999998876667888999999887765554432100 0111100 01122222323222 468
Q ss_pred EEEEEeCCCCc
Q 042307 80 ILVILDNIWAN 90 (1314)
Q Consensus 80 ~LlvlD~v~~~ 90 (1314)
+++|+|+++..
T Consensus 274 ~vliIDEINRa 284 (459)
T PRK11331 274 YVFIIDEINRA 284 (459)
T ss_pred cEEEEehhhcc
Confidence 99999998755
No 178
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.014 Score=70.16 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=83.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCc-----cccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKF-----YEESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~- 75 (1314)
+.++|+.|+||||+|+.++...-..+..++. +++. -...+.+...-..+. ......+.++.+.....
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~~----C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~ 113 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCNE----CEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKY 113 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCc----cHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhh
Confidence 4579999999999999999876432111100 0000 011111111111110 00011222333333322
Q ss_pred ---cCCeEEEEEeCCCCcc--cccccCC--CCCCCCce-EEEEeccccccccccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 76 ---KEKKILVILDNIWANL--DLENVGI--PFGDRGCG-VLMTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 76 ---~~~~~LlvlD~v~~~~--~~~~~~~--~~~~~~~~-ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
.+++-++|+|+++... .+..+.. .-+..++. |+.||....+..........+++.+++.++..+.+...+..
T Consensus 114 ~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~ 193 (559)
T PRK05563 114 APSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDK 193 (559)
T ss_pred CcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH
Confidence 2567788999998652 2333211 11122334 44555554444322233557888999999999998887732
Q ss_pred CCCCccHHHHHHHHHHHhCCcHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
.... -..+.+..|++.++|-+.
T Consensus 194 egi~-i~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 194 EGIE-YEDEALRLIARAAEGGMR 215 (559)
T ss_pred cCCC-CCHHHHHHHHHHcCCCHH
Confidence 2211 124567788999988764
No 179
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.97 E-value=0.0056 Score=60.55 Aligned_cols=73 Identities=22% Similarity=0.275 Sum_probs=51.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHH--HHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQI--ADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
+.|.||+|+||||-+.-+++..-....-+++.-.++|++..+.-+...| ..+=... +-.++.
T Consensus 51 liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~----------------lp~grh 114 (333)
T KOG0991|consen 51 LIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVT----------------LPPGRH 114 (333)
T ss_pred eEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhcc----------------CCCCce
Confidence 5789999999999999999998766666788899988877655443332 1111111 112567
Q ss_pred EEEEEeCCCCc
Q 042307 80 ILVILDNIWAN 90 (1314)
Q Consensus 80 ~LlvlD~v~~~ 90 (1314)
-++|+|.+++.
T Consensus 115 KIiILDEADSM 125 (333)
T KOG0991|consen 115 KIIILDEADSM 125 (333)
T ss_pred eEEEeeccchh
Confidence 78999998876
No 180
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.93 E-value=0.0037 Score=62.89 Aligned_cols=145 Identities=20% Similarity=0.265 Sum_probs=88.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|..+|++|+|||-+|+.+++..++- ++.+.. ..-|-+..| +...+++.+..+-.+..+|+
T Consensus 154 VLFyGppGTGKTm~Akalane~kvp-------~l~vka-------t~liGehVG------dgar~Ihely~rA~~~aPci 213 (368)
T COG1223 154 VLFYGPPGTGKTMMAKALANEAKVP-------LLLVKA-------TELIGEHVG------DGARRIHELYERARKAAPCI 213 (368)
T ss_pred eEEECCCCccHHHHHHHHhcccCCc-------eEEech-------HHHHHHHhh------hHHHHHHHHHHHHHhcCCeE
Confidence 6789999999999999999887643 222211 122223322 23556777888887789999
Q ss_pred EEEeCCCCcc--------------cccccCCCC----CCCCceEEEEeccccccccc--cCCCccEEecCCCHHHHHHHH
Q 042307 82 VILDNIWANL--------------DLENVGIPF----GDRGCGVLMTARSQDVLSSK--MDCQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 82 lvlD~v~~~~--------------~~~~~~~~~----~~~~~~ilvTtr~~~~~~~~--~~~~~~~~l~~l~~~ea~~l~ 141 (1314)
+.+|.++... ....+.... .+.|...|-.|.+..+...+ .+....++..--+++|..+++
T Consensus 214 vFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~il 293 (368)
T COG1223 214 VFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEIL 293 (368)
T ss_pred EEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHH
Confidence 9999987541 111221111 23565666667666655432 233456677777899999999
Q ss_pred HHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 142 KKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
+..+..-.-. .....+.++.+.+|.
T Consensus 294 e~y~k~~Plp--v~~~~~~~~~~t~g~ 318 (368)
T COG1223 294 EYYAKKFPLP--VDADLRYLAAKTKGM 318 (368)
T ss_pred HHHHHhCCCc--cccCHHHHHHHhCCC
Confidence 9888432211 111244566666654
No 181
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.92 E-value=0.0042 Score=70.05 Aligned_cols=119 Identities=15% Similarity=0.234 Sum_probs=64.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh-cCCeE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR-KEKKI 80 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~ 80 (1314)
+.++|++|+|||++|+.+++.... .+.+++.+. .....+...+ ..+ ..... .+.+-
T Consensus 46 lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i~~~l-~~~----------------~~~~~~~~~~~ 102 (316)
T PHA02544 46 LLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFVRNRL-TRF----------------ASTVSLTGGGK 102 (316)
T ss_pred EEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHHHHHH-HHH----------------HHhhcccCCCe
Confidence 456999999999999999987631 244566554 2222111111 111 00000 13456
Q ss_pred EEEEeCCCCcc--c-ccccC--CCCCCCCceEEEEecccccccc-ccCCCccEEecCCCHHHHHHHHHH
Q 042307 81 LVILDNIWANL--D-LENVG--IPFGDRGCGVLMTARSQDVLSS-KMDCQNNFLVGALNESEAWDLFKK 143 (1314)
Q Consensus 81 LlvlD~v~~~~--~-~~~~~--~~~~~~~~~ilvTtr~~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~ 143 (1314)
++|+|+++... + .+.+. ......++++|+||........ .......+.++..+.++..+++..
T Consensus 103 vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 103 VIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 88999997651 1 11111 1112356788888865432211 122234677778888888776554
No 182
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.012 Score=70.51 Aligned_cols=163 Identities=13% Similarity=0.069 Sum_probs=84.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCc-----cccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKF-----YEESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~- 75 (1314)
+.++|+.|+||||+|+.+++..-....... ..+....+- +.+...-.... ......+.+..+.+.+.
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~ 113 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMF 113 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHh
Confidence 568999999999999999988653211100 001110000 11110000000 00011222222322222
Q ss_pred ---cCCeEEEEEeCCCCcc--cccccCCCC--CCCCceEEEEe-ccccccccccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 76 ---KEKKILVILDNIWANL--DLENVGIPF--GDRGCGVLMTA-RSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 76 ---~~~~~LlvlD~v~~~~--~~~~~~~~~--~~~~~~ilvTt-r~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
.+++-++|+|+++... .++.+.... +...+.+|++| ....+..........++..+++.++..+.+.+.+..
T Consensus 114 ~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~ 193 (563)
T PRK06647 114 PPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE 193 (563)
T ss_pred chhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH
Confidence 2566789999987663 233331111 22345555544 433333311233456889999999999888877632
Q ss_pred CCCCccHHHHHHHHHHHhCCcHHHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPIAI 172 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Plai 172 (1314)
... .-..+.+..|++..+|.+..+
T Consensus 194 egi-~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 194 DQI-KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred cCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 221 223566788999999977533
No 183
>PRK12377 putative replication protein; Provisional
Probab=96.91 E-value=0.0019 Score=68.16 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=46.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|.+|+|||+||..+++....+ ...++++++. ++...+-...... .....+.+.+ .+.-|
T Consensus 104 l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l--~~~dL 166 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQEL--CKVDL 166 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHh--cCCCE
Confidence 6899999999999999999998743 3347777653 3344443333111 1112344444 47779
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
||+||+...
T Consensus 167 LiIDDlg~~ 175 (248)
T PRK12377 167 LVLDEIGIQ 175 (248)
T ss_pred EEEcCCCCC
Confidence 999999543
No 184
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0067 Score=70.88 Aligned_cols=141 Identities=23% Similarity=0.271 Sum_probs=83.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||-+|++|+.+.. .-|+++..+.-+. ..+| ...+.++++.++-++..+|.
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGPELLN-------MYVG------qSE~NVR~VFerAR~A~PCV 767 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGPELLN-------MYVG------QSEENVREVFERARSAAPCV 767 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhce-------eeEEeecCHHHHH-------HHhc------chHHHHHHHHHHhhccCCeE
Confidence 67899999999999999999876 4467766542211 1222 23456778888888889999
Q ss_pred EEEeCCCCcc-------------------cccccCCCC--CCCCceEEEEecccccccc----ccCCCccEEecCCCHHH
Q 042307 82 VILDNIWANL-------------------DLENVGIPF--GDRGCGVLMTARSQDVLSS----KMDCQNNFLVGALNESE 136 (1314)
Q Consensus 82 lvlD~v~~~~-------------------~~~~~~~~~--~~~~~~ilvTtr~~~~~~~----~~~~~~~~~l~~l~~~e 136 (1314)
|.||.+|+.. -+.++.-.. ..++.-||=.|...+.... ..+..+.+.+++=+++|
T Consensus 768 IFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e 847 (953)
T KOG0736|consen 768 IFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE 847 (953)
T ss_pred EEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH
Confidence 9999987651 011221111 2244445655666654432 12345667777766666
Q ss_pred HHHHHHHHh-C--CCCCCccHHHHHHHHHHHhC
Q 042307 137 AWDLFKKLV-G--DKIENNDLKAVAVDIAKACG 166 (1314)
Q Consensus 137 a~~l~~~~~-~--~~~~~~~~~~~~~~i~~~~~ 166 (1314)
.+.-..+.. . .-..+.. ..+||++|.
T Consensus 848 sk~~vL~AlTrkFkLdedVd----L~eiAk~cp 876 (953)
T KOG0736|consen 848 SKLRVLEALTRKFKLDEDVD----LVEIAKKCP 876 (953)
T ss_pred HHHHHHHHHHHHccCCCCcC----HHHHHhhCC
Confidence 654433333 1 1122223 346777775
No 185
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0061 Score=62.58 Aligned_cols=146 Identities=22% Similarity=0.264 Sum_probs=84.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.||+-||+.|+.+... -|++++...-+ -+.+|. ....+..+.+.-+++++-+
T Consensus 169 iLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSSDLv-------SKWmGE------SEkLVknLFemARe~kPSI 228 (439)
T KOG0739|consen 169 ILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSDLV-------SKWMGE------SEKLVKNLFEMARENKPSI 228 (439)
T ss_pred EEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehHHHH-------HHHhcc------HHHHHHHHHHHHHhcCCcE
Confidence 678999999999999999988652 23444443211 222221 2234455565666689999
Q ss_pred EEEeCCCCc---------ccccccC---------CCCCCCCceEEEEecccccccccc--CCCccEEecCCCHHHHHHHH
Q 042307 82 VILDNIWAN---------LDLENVG---------IPFGDRGCGVLMTARSQDVLSSKM--DCQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 82 lvlD~v~~~---------~~~~~~~---------~~~~~~~~~ilvTtr~~~~~~~~~--~~~~~~~l~~l~~~ea~~l~ 141 (1314)
|.+|.|+.. +..+.+. .-....|.-||=.|.-..+...++ +....|-++--.......+|
T Consensus 229 IFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF 308 (439)
T KOG0739|consen 229 IFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMF 308 (439)
T ss_pred EEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhh
Confidence 999999754 1111111 111224555666677776655422 23344444433444555678
Q ss_pred HHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 142 KKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
+-+.|+... ...++-.++++++..|.
T Consensus 309 ~lhlG~tp~-~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 309 KLHLGDTPH-VLTEQDFKELARKTEGY 334 (439)
T ss_pred eeccCCCcc-ccchhhHHHHHhhcCCC
Confidence 888886433 33344566777777654
No 186
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.011 Score=60.87 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=44.4
Q ss_pred EEEecccccccc-ccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH
Q 042307 108 LMTARSQDVLSS-KMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 108 lvTtr~~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
=-|||.-.+... .-+...+.+++-++.+|-.+++.+.++- ..-.-.++.+.+|+++..|-|.
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCCCChHHHHHHHHhccCCcH
Confidence 358887665543 2234456888999999999999988842 2222335678899999999994
No 187
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.87 E-value=0.017 Score=62.81 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=79.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh-----c
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR-----K 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-----~ 76 (1314)
++|||++|+|||.+|+.++.+.... .+-++.++- . ....++++ ..+..+.+... +
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~-----~i~vsa~eL----------~----sk~vGEsE-k~IR~~F~~A~~~a~~~ 210 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIE-----PIVMSAGEL----------E----SENAGEPG-KLIRQRYREAADIIKKK 210 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCC-----eEEEEHHHh----------h----cCcCCcHH-HHHHHHHHHHHHHhhcc
Confidence 6899999999999999999998633 233332221 1 11111111 22222222221 3
Q ss_pred CCeEEEEEeCCCCccc--------c------cccC----------CC--C----CCCCceEEEEecccccccccc-C---
Q 042307 77 EKKILVILDNIWANLD--------L------ENVG----------IP--F----GDRGCGVLMTARSQDVLSSKM-D--- 122 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~~--------~------~~~~----------~~--~----~~~~~~ilvTtr~~~~~~~~~-~--- 122 (1314)
+++++|++|+++.... . ..+. .+ + ...+..||+||.+......++ +
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGR 290 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGR 290 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCC
Confidence 6789999999875410 0 0110 00 1 134567889988776443211 1
Q ss_pred CCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH
Q 042307 123 CQNNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 123 ~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
-... +..-+.++..+++..+......+ .....+|++...|-|+
T Consensus 291 fDk~--i~lPd~e~R~eIL~~~~r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 291 MEKF--YWAPTREDRIGVVHGIFRDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCce--eCCCCHHHHHHHHHHHhccCCCC---HHHHHHHHHcCCCCCc
Confidence 1222 34457888888888877542221 2445577777777665
No 188
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.013 Score=70.76 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=85.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC-------------------CEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF-------------------DEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f-------------------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.++|+.|+||||+|+.++...-..... ..++.++......
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~-------------------- 100 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTG-------------------- 100 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccC--------------------
Confidence 4689999999999999999886422111 0112222211111
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEE-EEeccccccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVL-MTARSQDVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~il-vTtr~~~~~~~~~~~~~~~~l~~l~ 133 (1314)
.+.++.+..... .+++-++|+|+|+... ..+.+. +.-+...+.+| +||....+..........+++.+++
T Consensus 101 -v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~ 179 (576)
T PRK14965 101 -VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIP 179 (576)
T ss_pred -HHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCC
Confidence 222333333222 1456689999997652 222221 11122344554 5555554543223345678899999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcH-HHHHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLP-IAIVTI 175 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 175 (1314)
.++..+.+...+...... -..+.+..|++.++|.. .|+..+
T Consensus 180 ~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 180 LQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999998888766322211 22456778999999865 555554
No 189
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.84 E-value=0.002 Score=64.68 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=44.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|..|+|||.||..+++....+. ..+.|++. .+++..+ ........ .....+.+. +-=|
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~------~~L~~~l----~~~~~~~~----~~~~~~~l~--~~dl 111 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITA------SDLLDEL----KQSRSDGS----YEELLKRLK--RVDL 111 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH------HHHHHHH----HCCHCCTT----HCHHHHHHH--TSSC
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccCC--cceeEeec------Cceeccc----cccccccc----hhhhcCccc--cccE
Confidence 68999999999999999998876432 24777863 3333333 22221111 223445554 4567
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
|||||+...
T Consensus 112 LilDDlG~~ 120 (178)
T PF01695_consen 112 LILDDLGYE 120 (178)
T ss_dssp EEEETCTSS
T ss_pred eccccccee
Confidence 889998754
No 190
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.83 E-value=0.0025 Score=65.53 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=25.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
.+.|+|.+|+|||+++++++........+ ++.+.+...
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~ 63 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDS 63 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEecc
Confidence 47899999999999999999998865222 444444443
No 191
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.80 E-value=0.0044 Score=63.18 Aligned_cols=86 Identities=26% Similarity=0.327 Sum_probs=56.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc-CcCHHHHHHHHHHHhCCCcccc----ChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ-TPDIKKIQGQIADKLGLKFYEE----SESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~ 75 (1314)
||+++|+.|+||||.+.+++.+...+ -..+..++... .....+-++..++.++...... +..+...+..++..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 68999999999999999999998754 34577787654 3345666778889998774322 22333334444444
Q ss_pred cCCeEEEEEeCCC
Q 042307 76 KEKKILVILDNIW 88 (1314)
Q Consensus 76 ~~~~~LlvlD~v~ 88 (1314)
+++.=++++|=..
T Consensus 81 ~~~~D~vlIDT~G 93 (196)
T PF00448_consen 81 KKGYDLVLIDTAG 93 (196)
T ss_dssp HTTSSEEEEEE-S
T ss_pred hcCCCEEEEecCC
Confidence 3455677788653
No 192
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.80 E-value=0.0054 Score=61.56 Aligned_cols=39 Identities=33% Similarity=0.448 Sum_probs=31.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP 41 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~ 41 (1314)
++.|.|.+|+||||+|..++..... .-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcch
Confidence 5789999999999999999988864 23458888876654
No 193
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0052 Score=70.95 Aligned_cols=155 Identities=18% Similarity=0.162 Sum_probs=89.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc--CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP--DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
|.|.|..|+|||+||++++.... ++..-++.+++++.-. .+..++..+...+. ..+. ..+
T Consensus 434 Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfs----------------e~~~-~~P 495 (952)
T KOG0735|consen 434 ILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFS----------------EALW-YAP 495 (952)
T ss_pred EEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHH----------------HHHh-hCC
Confidence 68999999999999999999988 5566678888887532 34444433333221 1122 578
Q ss_pred EEEEEeCCCCccc--------cc-----------ccCCCCCCCCce--EEEEecccccccc----ccCCCccEEecCCCH
Q 042307 80 ILVILDNIWANLD--------LE-----------NVGIPFGDRGCG--VLMTARSQDVLSS----KMDCQNNFLVGALNE 134 (1314)
Q Consensus 80 ~LlvlD~v~~~~~--------~~-----------~~~~~~~~~~~~--ilvTtr~~~~~~~----~~~~~~~~~l~~l~~ 134 (1314)
-++|+||++-... |. +....+...+.+ +|.|.+...-... .........++++..
T Consensus 496 SiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 496 SIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 8999999875411 11 110112223444 3334333221111 123344677888999
Q ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCc-HHHHHHH
Q 042307 135 SEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGL-PIAIVTI 175 (1314)
Q Consensus 135 ~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 175 (1314)
.+..++++.........- ..+..+-++.+++|. |.-+.++
T Consensus 576 ~~R~~IL~~~~s~~~~~~-~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 576 TRRKEILTTIFSKNLSDI-TMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred hHHHHHHHHHHHhhhhhh-hhHHHHHHHHhcCCccchhHHHH
Confidence 988888887774333211 222334477788775 5444443
No 194
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0039 Score=72.66 Aligned_cols=131 Identities=23% Similarity=0.276 Sum_probs=74.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc--CC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK--EK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~ 78 (1314)
+++++|++|+|||.|++.+++.... .|-++ .++.-.|-.++... +.+..+.-. .++.+.+.+ .+
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~R--kfvR~---sLGGvrDEAEIRGH-----RRTYIGamP----GrIiQ~mkka~~~ 417 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALGR--KFVRI---SLGGVRDEAEIRGH-----RRTYIGAMP----GKIIQGMKKAGVK 417 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhCC--CEEEE---ecCccccHHHhccc-----cccccccCC----hHHHHHHHHhCCc
Confidence 4789999999999999999998873 35333 34443333222111 111111111 233334432 46
Q ss_pred eEEEEEeCCCCcc---------ccccc------------CCCCCCCCceEE--EEecccc-ccccccCCCccEEecCCCH
Q 042307 79 KILVILDNIWANL---------DLENV------------GIPFGDRGCGVL--MTARSQD-VLSSKMDCQNNFLVGALNE 134 (1314)
Q Consensus 79 ~~LlvlD~v~~~~---------~~~~~------------~~~~~~~~~~il--vTtr~~~-~~~~~~~~~~~~~l~~l~~ 134 (1314)
+=+++||.+|... .+-++ +...+-.=|+|+ .|+..-. ++...++.-.++++.++++
T Consensus 418 NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~ 497 (782)
T COG0466 418 NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTE 497 (782)
T ss_pred CCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCCh
Confidence 7799999998651 01011 111111124444 3333333 4443456678999999999
Q ss_pred HHHHHHHHHHh
Q 042307 135 SEAWDLFKKLV 145 (1314)
Q Consensus 135 ~ea~~l~~~~~ 145 (1314)
+|-.++-+++.
T Consensus 498 ~EKl~IAk~~L 508 (782)
T COG0466 498 DEKLEIAKRHL 508 (782)
T ss_pred HHHHHHHHHhc
Confidence 99999988887
No 195
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.74 E-value=0.0049 Score=64.17 Aligned_cols=161 Identities=20% Similarity=0.170 Sum_probs=93.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC-CEEEEEEeccCcCHHHHHHHH--HHHhCCCccccChhHHHHHHHHHHhc--
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF-DEVVYADVSQTPDIKKIQGQI--ADKLGLKFYEESESGRARKLCERLRK-- 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i--~~~l~~~~~~~~~~~~~~~~~~~l~~-- 76 (1314)
...+|++|+|||+-|..+++..-..+.| .++.-.+++......-+-..+ .+++..... +....
T Consensus 60 ~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~------------~~~~~~~ 127 (346)
T KOG0989|consen 60 YLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLK------------RSDGYPC 127 (346)
T ss_pred EEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccc------------cccCCCC
Confidence 4679999999999999999987764555 446666776654433111111 111111100 00000
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCC--CCCCce-EEEEeccccccccccCCCccEEecCCCHHHHHHHHHHHhCCCCCC
Q 042307 77 EKKILVILDNIWAN--LDLENVGIPF--GDRGCG-VLMTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKIEN 151 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~--~~~~~~~~~~--~~~~~~-ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 151 (1314)
..--.+|||+++.. +.|..+.... ....++ |+||+--..+.........-|..+++.+++.+.-++..+..+..+
T Consensus 128 ~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~ 207 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD 207 (346)
T ss_pred CcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC
Confidence 23368899999876 5666663221 123445 455544443333222334568889999999999888888433322
Q ss_pred ccHHHHHHHHHHHhCCc-HHHHHHH
Q 042307 152 NDLKAVAVDIAKACGGL-PIAIVTI 175 (1314)
Q Consensus 152 ~~~~~~~~~i~~~~~g~-Plai~~~ 175 (1314)
- ..++.+.|++.++|- --|+..+
T Consensus 208 ~-d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 208 I-DDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred C-CHHHHHHHHHHcCCcHHHHHHHH
Confidence 2 245677889988874 5555544
No 196
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.028 Score=61.75 Aligned_cols=151 Identities=16% Similarity=0.131 Sum_probs=84.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-----------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-----------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESES 64 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-----------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 64 (1314)
+.++|+.|+||+++|..+++..--+. |.| +.|+....... +......-..
T Consensus 29 ~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~------------~~k~~~~I~i 95 (319)
T PRK08769 29 LLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT------------GDKLRTEIVI 95 (319)
T ss_pred EeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc------------cccccccccH
Confidence 56899999999999999997754321 111 22221000000 0000000112
Q ss_pred HHHHHHHHHHh----cCCeEEEEEeCCCCccc------ccccCCCCCCCCceEEEEecc-ccccccccCCCccEEecCCC
Q 042307 65 GRARKLCERLR----KEKKILVILDNIWANLD------LENVGIPFGDRGCGVLMTARS-QDVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 65 ~~~~~~~~~l~----~~~~~LlvlD~v~~~~~------~~~~~~~~~~~~~~ilvTtr~-~~~~~~~~~~~~~~~l~~l~ 133 (1314)
+.++.+.+.+. .+++-++|+|+++.... +..+-- +..++.+|++|.+ ..+.+.-..-...+.+.+++
T Consensus 96 dqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~ 173 (319)
T PRK08769 96 EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRSRCQRLEFKLPP 173 (319)
T ss_pred HHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHhhheEeeCCCcC
Confidence 33344444333 24677999999987621 222212 2345666655554 44443223345678899999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
.+++.+.+... | .+ ...+..++..++|.|.....
T Consensus 174 ~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 174 AHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred HHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHH
Confidence 99999888764 2 11 23366789999999986543
No 197
>PRK06921 hypothetical protein; Provisional
Probab=96.70 E-value=0.0033 Score=67.70 Aligned_cols=67 Identities=24% Similarity=0.339 Sum_probs=42.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|..|+|||.||..+++....+. -..++|++.. +....+...+ .......+.+ ..--|
T Consensus 120 l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~--~~~dl 180 (266)
T PRK06921 120 IALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRM--KKVEV 180 (266)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHh--cCCCE
Confidence 68999999999999999999876331 2357788742 2223332221 1112233334 35669
Q ss_pred EEEeCC
Q 042307 82 VILDNI 87 (1314)
Q Consensus 82 lvlD~v 87 (1314)
||+||+
T Consensus 181 LiIDDl 186 (266)
T PRK06921 181 LFIDDL 186 (266)
T ss_pred EEEecc
Confidence 999999
No 198
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.70 E-value=0.002 Score=65.25 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=35.3
Q ss_pred cccCCCCCCCEEEccCccCc-ccch----hhcCCCCCCEEeeccCCCCCccchhhh-------------cCCCCCcEEEc
Q 042307 417 AVIGELKQLEILSFQGSNIE-QLPR----EIGQLTRLRSLNLSSCYQLKAISSNVI-------------SNLSQLEELYL 478 (1314)
Q Consensus 417 ~~~~~L~~L~~L~L~~~~i~-~lp~----~i~~L~~L~~L~L~~~~~l~~~~~~~l-------------~~l~~L~~L~l 478 (1314)
..+-++++|+..+||.|.+. ..|. -|+.-+.|.||.+++| .++.+...-+ .+-+.|+....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 34456666666666666554 3333 2455566666666665 3443322212 23445666666
Q ss_pred CCCcc
Q 042307 479 GDTFI 483 (1314)
Q Consensus 479 ~~~~~ 483 (1314)
+.|++
T Consensus 165 grNRl 169 (388)
T COG5238 165 GRNRL 169 (388)
T ss_pred ccchh
Confidence 66655
No 199
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.027 Score=62.05 Aligned_cols=157 Identities=12% Similarity=0.102 Sum_probs=84.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCc-------cccChhHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKF-------YEESESGRARKLCERL 74 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~~~~~l 74 (1314)
+.++|+.|+||+++|+.++...--.+..... .++.. ...+.+...-..+. ...-..+.++.+.+.+
T Consensus 27 ~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 27 LLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQC----HSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKV 99 (325)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHH
Confidence 4579999999999999999886532211100 01110 11111111100000 0011234444454444
Q ss_pred h----cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEecc-ccccccccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 75 R----KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTARS-QDVLSSKMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 75 ~----~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~-~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
. .+++-++|+|+++... ....+. ..-+..++.+|++|.+ ..+.+.-..-...+.+.+++.+++.+.+....
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred hhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh
Confidence 3 2567788899998762 122211 1112334555555544 44544223335678999999999999998765
Q ss_pred CCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 146 GDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
+. . ...+...++.++|.|..
T Consensus 180 ~~--~----~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 180 SA--E----ISEILTALRINYGRPLL 199 (325)
T ss_pred cc--C----hHHHHHHHHHcCCCHHH
Confidence 32 1 12356778889999963
No 200
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.69 E-value=0.0087 Score=75.46 Aligned_cols=152 Identities=19% Similarity=0.259 Sum_probs=86.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||++|+.+++..... | +.+..+ .+... ..+ .....+..+....++..+++
T Consensus 490 iLL~GppGtGKT~lakalA~e~~~~--f---i~v~~~----------~l~~~----~vG-ese~~i~~~f~~A~~~~p~i 549 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGAN--F---IAVRGP----------EILSK----WVG-ESEKAIREIFRKARQAAPAI 549 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC--E---EEEehH----------HHhhc----ccC-cHHHHHHHHHHHHHhcCCEE
Confidence 6789999999999999999987521 2 222211 11111 111 12234555666666578899
Q ss_pred EEEeCCCCccc--------------ccccCCCC----CCCCceEEEEeccccccccc----cCCCccEEecCCCHHHHHH
Q 042307 82 VILDNIWANLD--------------LENVGIPF----GDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 82 lvlD~v~~~~~--------------~~~~~~~~----~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea~~ 139 (1314)
|++|+++.... ..++.... ...+..||.||...+....+ .+....+.++..+.++..+
T Consensus 550 ifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~ 629 (733)
T TIGR01243 550 IFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKE 629 (733)
T ss_pred EEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHH
Confidence 99999875310 01110001 12344566677665533321 1346678899999999999
Q ss_pred HHHHHhCCCCCCccHHHHHHHHHHHhCCc-HHHHHHH
Q 042307 140 LFKKLVGDKIENNDLKAVAVDIAKACGGL-PIAIVTI 175 (1314)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 175 (1314)
+|..+......... .....+++.+.|. .-.|..+
T Consensus 630 i~~~~~~~~~~~~~--~~l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 630 IFKIHTRSMPLAED--VDLEELAEMTEGYTGADIEAV 664 (733)
T ss_pred HHHHHhcCCCCCcc--CCHHHHHHHcCCCCHHHHHHH
Confidence 99877643221111 1145677777765 3444443
No 201
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.056 Score=59.42 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=89.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 62 (1314)
+.+.|+.|+||+++|..++...--.+ |.| +.|+.-.... ..-
T Consensus 28 ~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~------------------~~I 88 (319)
T PRK06090 28 LLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEG------------------KSI 88 (319)
T ss_pred EeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCC------------------CcC
Confidence 46899999999999999988754221 222 2222211000 001
Q ss_pred hhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEE-EEeccccccccccCCCccEEecCCC
Q 042307 63 ESGRARKLCERLR----KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVL-MTARSQDVLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 63 ~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~il-vTtr~~~~~~~~~~~~~~~~l~~l~ 133 (1314)
..+.++.+.+.+. .+++-++|+|+++... ....+. ..-+..++.+| +|++...+.+....-...+.+.+++
T Consensus 89 ~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~ 168 (319)
T PRK06090 89 TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPS 168 (319)
T ss_pred CHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCC
Confidence 1233334433332 2456788999988762 222221 11123345544 4555555554333445678999999
Q ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcCChhHHHHHHHHh
Q 042307 134 ESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALREL 194 (1314)
Q Consensus 134 ~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l 194 (1314)
.+++.+.+.... . + .+..+++.++|.|.....+ +.....+.++.+.+.+
T Consensus 169 ~~~~~~~L~~~~-~--~------~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l 217 (319)
T PRK06090 169 TAQAMQWLKGQG-I--T------VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQL 217 (319)
T ss_pred HHHHHHHHHHcC-C--c------hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 999999987642 1 1 1346788999999865433 3333334444444433
No 202
>PRK08181 transposase; Validated
Probab=96.63 E-value=0.0043 Score=66.36 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=44.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||.||..+++....+ ...++|+.+ .++...+..... + .......+.+. +.-|
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~----~~~~~~l~~l~--~~dL 170 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----E----LQLESAIAKLD--KFDL 170 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----C----CcHHHHHHHHh--cCCE
Confidence 6899999999999999999877533 234677763 334444433211 1 11223444443 5569
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
||+||+...
T Consensus 171 LIIDDlg~~ 179 (269)
T PRK08181 171 LILDDLAYV 179 (269)
T ss_pred EEEeccccc
Confidence 999998644
No 203
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.63 E-value=0.0084 Score=64.27 Aligned_cols=88 Identities=28% Similarity=0.293 Sum_probs=52.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccC----CCEEEEEEeccCcCHHHHHHHHHHHhCCCccc---------cChh---
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKL----FDEVVYADVSQTPDIKKIQGQIADKLGLKFYE---------ESES--- 64 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~--- 64 (1314)
++.|.|.+|+|||++|.+++........ -..++|++....++... +.++++..+..... ....
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 99 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPER-LVQIAERFGLDPEEVLDNIYVARAYNSDHQ 99 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHH-HHHHHHHhccChHhHhcCEEEEecCCHHHH
Confidence 4789999999999999999865432211 25799999887665443 33444444332110 0111
Q ss_pred -HHHHHHHHHHhcC-CeEEEEEeCCCC
Q 042307 65 -GRARKLCERLRKE-KKILVILDNIWA 89 (1314)
Q Consensus 65 -~~~~~~~~~l~~~-~~~LlvlD~v~~ 89 (1314)
..+..+...+.+. +.-++|+|.+..
T Consensus 100 ~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 100 LQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1223344444445 777889998754
No 204
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.052 Score=60.00 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=90.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc--------------cCCCEEEEEEeccCcCHHHHHHHHHHHhCC--CccccChhH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND--------------KLFDEVVYADVSQTPDIKKIQGQIADKLGL--KFYEESESG 65 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~--------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~ 65 (1314)
..++|+.|+||+++|..+++..-.. .|.| +.|+.-.....-...-...++..+. .....-..+
T Consensus 29 ~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id 107 (314)
T PRK07399 29 YLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLE 107 (314)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccccccchhhhhhccccccccccCcHH
Confidence 4689999999999999998885322 2222 3444321000000000111112211 111111233
Q ss_pred HHHHHHHHHh----cCCeEEEEEeCCCCccc--c----cccCCCCCCCCceEEEEeccccccccccCCCccEEecCCCHH
Q 042307 66 RARKLCERLR----KEKKILVILDNIWANLD--L----ENVGIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLVGALNES 135 (1314)
Q Consensus 66 ~~~~~~~~l~----~~~~~LlvlD~v~~~~~--~----~~~~~~~~~~~~~ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ 135 (1314)
.++.+.+.+. .+++-++|+|+++.... . ..+--| + +..-|++|++...+.+.-......+.+.+++.+
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP-p-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~ 185 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-G-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDE 185 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC-C-CCeEEEEECChHhCcHHHHhhceEEecCCCCHH
Confidence 4455555554 25778999999877622 1 122223 2 333455555555444422334668899999999
Q ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 136 EAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 136 ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
+..+.+.+....... ......++...+|.|.....
T Consensus 186 ~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 186 QLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHH
Confidence 999999987532111 11135788999999965443
No 205
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.57 E-value=0.012 Score=74.26 Aligned_cols=153 Identities=15% Similarity=0.124 Sum_probs=82.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC-----CEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF-----DEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.++|++|+||||+|..++++....... ..++.++++.-. ........-..++..+.....+
T Consensus 211 ~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-------------ag~~~~ge~e~~lk~ii~e~~~ 277 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-------------AGASVKGEFENRLKSVIDEVKA 277 (852)
T ss_pred eeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-------------cccccchHHHHHHHHHHHHHHh
Confidence 4699999999999999999987533111 123444433210 0000001112334445554442
Q ss_pred -CCeEEEEEeCCCCcc---------cccccCCCCCCCC-ceEEEEeccccc------cccccCCCccEEecCCCHHHHHH
Q 042307 77 -EKKILVILDNIWANL---------DLENVGIPFGDRG-CGVLMTARSQDV------LSSKMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 77 -~~~~LlvlD~v~~~~---------~~~~~~~~~~~~~-~~ilvTtr~~~~------~~~~~~~~~~~~l~~l~~~ea~~ 139 (1314)
+.++++++|++.... +...+..|.-..| -++|-+|..... .+........+.+++++.+++.+
T Consensus 278 ~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~ 357 (852)
T TIGR03345 278 SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIR 357 (852)
T ss_pred cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHH
Confidence 578999999976542 1111223332333 556666655321 11112334689999999999999
Q ss_pred HHHHHhC---CCCCCccHHHHHHHHHHHhCC
Q 042307 140 LFKKLVG---DKIENNDLKAVAVDIAKACGG 167 (1314)
Q Consensus 140 l~~~~~~---~~~~~~~~~~~~~~i~~~~~g 167 (1314)
++..... ....-.-..++...+++.+.+
T Consensus 358 iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 358 MLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred HHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 9754442 111112234555666666654
No 206
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.55 E-value=0.0049 Score=71.62 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=55.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
|..++|++|.||||||.-++++.. | .|+-|++++..+...+-..|...+.....-+. .+++.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------dsrP~ 389 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------DSRPV 389 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------CCCcc
Confidence 457899999999999999998875 3 48999999999888888777776644322111 15778
Q ss_pred EEEEeCCCCc
Q 042307 81 LVILDNIWAN 90 (1314)
Q Consensus 81 LlvlD~v~~~ 90 (1314)
-+|+|.++-.
T Consensus 390 CLViDEIDGa 399 (877)
T KOG1969|consen 390 CLVIDEIDGA 399 (877)
T ss_pred eEEEecccCC
Confidence 8899998755
No 207
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.53 E-value=0.0082 Score=62.91 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=33.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKK 45 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 45 (1314)
++.|+|++|+|||++|.+++...... -..++|++... .+...
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~r 55 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPER 55 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHH
Confidence 47899999999999999998876532 45799999875 44443
No 208
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.038 Score=61.42 Aligned_cols=145 Identities=15% Similarity=0.217 Sum_probs=85.7
Q ss_pred EEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEEE
Q 042307 3 GVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKILV 82 (1314)
Q Consensus 3 ~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Ll 82 (1314)
.++||+|+|||++++++|+... |+ |+-+.+....+-.+ +.++... ...+-+|
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~----yd-IydLeLt~v~~n~d---------------------Lr~LL~~--t~~kSIi 290 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYLN----YD-IYDLELTEVKLDSD---------------------LRHLLLA--TPNKSIL 290 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhcC----Cc-eEEeeeccccCcHH---------------------HHHHHHh--CCCCcEE
Confidence 4799999999999999999887 65 44455443322111 2222211 1567788
Q ss_pred EEeCCCCcccccc---------------c---------CCCCCCC-Cce-EEEEeccccccccc----cCCCccEEecCC
Q 042307 83 ILDNIWANLDLEN---------------V---------GIPFGDR-GCG-VLMTARSQDVLSSK----MDCQNNFLVGAL 132 (1314)
Q Consensus 83 vlD~v~~~~~~~~---------------~---------~~~~~~~-~~~-ilvTtr~~~~~~~~----~~~~~~~~l~~l 132 (1314)
|+.|+|-..++.. + .-.+... +-| |+.||....-...+ .+-...+.|+-=
T Consensus 291 vIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyC 370 (457)
T KOG0743|consen 291 LIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYC 370 (457)
T ss_pred EEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCC
Confidence 8888865411110 0 0111222 124 55677776543321 123456788888
Q ss_pred CHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042307 133 NESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARAL 179 (1314)
Q Consensus 133 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 179 (1314)
+.+.-..|+..+.+...+ ...+.+|.+...+.-+.-..+|+.+
T Consensus 371 tf~~fK~La~nYL~~~~~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 371 TFEAFKTLASNYLGIEED----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CHHHHHHHHHHhcCCCCC----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 888888999998875332 2345566666666666556666555
No 209
>PRK04296 thymidine kinase; Provisional
Probab=96.48 E-value=0.0028 Score=64.65 Aligned_cols=110 Identities=18% Similarity=0.137 Sum_probs=62.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc--cCh-hHHHHHHHHHHhcC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE--ESE-SGRARKLCERLRKE 77 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~-~~~~~~~~~~l~~~ 77 (1314)
++.|+|..|.||||+|..++.+.... -..++.+. ...+.+.....++++++..... ... .+....+.. ..+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~ 77 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGE 77 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCC
Confidence 46789999999999999999988643 23455452 1112222234456666654332 111 122222222 224
Q ss_pred CeEEEEEeCCCCc--ccccccCCCCCCCCceEEEEeccccc
Q 042307 78 KKILVILDNIWAN--LDLENVGIPFGDRGCGVLMTARSQDV 116 (1314)
Q Consensus 78 ~~~LlvlD~v~~~--~~~~~~~~~~~~~~~~ilvTtr~~~~ 116 (1314)
+.-++|+|.+.-. +++.++.......|..|++|.++...
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 5568999998543 22333322224467889999988653
No 210
>PRK06526 transposase; Provisional
Probab=96.47 E-value=0.0045 Score=65.92 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=42.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||+||..++....... + .+.|+. ..++...+.... .. .........+ .+.-+
T Consensus 101 lll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~t------~~~l~~~l~~~~----~~----~~~~~~l~~l--~~~dl 162 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFAT------AAQWVARLAAAH----HA----GRLQAELVKL--GRYPL 162 (254)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhhh------HHHHHHHHHHHH----hc----CcHHHHHHHh--ccCCE
Confidence 68999999999999999998876332 2 355543 233333333221 11 1112223333 34568
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
+|+||+...
T Consensus 163 LIIDD~g~~ 171 (254)
T PRK06526 163 LIVDEVGYI 171 (254)
T ss_pred EEEcccccC
Confidence 999999754
No 211
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.47 E-value=0.037 Score=59.95 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=28.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKI 46 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 46 (1314)
|.|.|++|+|||++|+.++.... . ..+.+++....+..++
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg----~-~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRD----R-PVMLINGDAELTTSDL 63 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC----C-CEEEEeCCccCCHHHH
Confidence 67899999999999999987542 1 2455666655444433
No 212
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.011 Score=66.05 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=56.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-cCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-PDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
+|+++|+.|+||||++.+++.....+.....+..+..... ....+-++...+.++..................+. ++
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~--~~ 216 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR--NK 216 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--CC
Confidence 5789999999999999999988643211235667765442 24455666777788877654443333444444443 44
Q ss_pred EEEEEeCCCC
Q 042307 80 ILVILDNIWA 89 (1314)
Q Consensus 80 ~LlvlD~v~~ 89 (1314)
-++++|...-
T Consensus 217 DlVLIDTaG~ 226 (374)
T PRK14722 217 HMVLIDTIGM 226 (374)
T ss_pred CEEEEcCCCC
Confidence 6677998753
No 213
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.035 Score=66.57 Aligned_cols=149 Identities=20% Similarity=0.241 Sum_probs=95.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||-||+.++-+..+- |+.++.. ++.+.+... ...++..+....+.+.+++
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS--------EFvE~~~g~-----~asrvr~lf~~ar~~aP~i 406 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS--------EFVEMFVGV-----GASRVRDLFPLARKNAPSI 406 (774)
T ss_pred eEEECCCCCcHHHHHHHHhcccCCc-------eeeechH--------HHHHHhccc-----chHHHHHHHHHhhccCCeE
Confidence 5789999999999999999887643 4455443 222222111 2466777777777788999
Q ss_pred EEEeCCCCccc-----------------ccccCCCCCC----CCceEEEEecccccccc----ccCCCccEEecCCCHHH
Q 042307 82 VILDNIWANLD-----------------LENVGIPFGD----RGCGVLMTARSQDVLSS----KMDCQNNFLVGALNESE 136 (1314)
Q Consensus 82 lvlD~v~~~~~-----------------~~~~~~~~~~----~~~~ilvTtr~~~~~~~----~~~~~~~~~l~~l~~~e 136 (1314)
+.+|+++.... +.++.....+ .+.-++-+|+..++... .-+....+.++.-+..+
T Consensus 407 ifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 407 IFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred EEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhh
Confidence 99999875521 1122111111 22334445666665443 12345678888889999
Q ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 137 AWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 137 a~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
..++|..|+.....+.+..++.+ |+....|.+=|
T Consensus 487 r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 487 RASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred hHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 99999999964443345556665 88888887644
No 214
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.022 Score=66.07 Aligned_cols=148 Identities=18% Similarity=0.266 Sum_probs=89.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.|||-||..++..+. .-+|++..+.- +.+.+|. ..+.++.+..+-+..++|+
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~-------~~fisvKGPEl-------L~KyIGa------SEq~vR~lF~rA~~a~PCi 763 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNSN-------LRFISVKGPEL-------LSKYIGA------SEQNVRDLFERAQSAKPCI 763 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCHHH-------HHHHhcc------cHHHHHHHHHHhhccCCeE
Confidence 67899999999999999998876 23577665422 2223322 2345666777777689999
Q ss_pred EEEeCCCCcc-------------cccccCCCCCC----CCceEEE-EeccccccccccC---CCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANL-------------DLENVGIPFGD----RGCGVLM-TARSQDVLSSKMD---CQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~-------------~~~~~~~~~~~----~~~~ilv-Ttr~~~~~~~~~~---~~~~~~l~~l~~~ea~~l 140 (1314)
+.||..++.. ...++.....+ .|..|+- |||..-+.+..++ -.+.+.=+.-++.|..++
T Consensus 764 LFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~i 843 (952)
T KOG0735|consen 764 LFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEI 843 (952)
T ss_pred EEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHH
Confidence 9999987651 12233222222 5667774 5666554443222 233444455677788888
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 141 FKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
+.........+. ....+.++.+.+|.--|
T Consensus 844 l~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 844 LQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 888774222211 12244677777766544
No 215
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.45 E-value=0.016 Score=72.89 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=73.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC---C-CE-EEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL---F-DE-VVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~---f-~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.++|++|+|||++|+.++++...... + +. ++.++++. +... ...-..-...+..+.+++.+
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~----------l~a~---~~~~g~~e~~l~~i~~~~~~ 272 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS----------LLAG---TKYRGDFEERLKAVVSEIEK 272 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH----------Hhhh---ccccchHHHHHHHHHHHHhc
Confidence 578999999999999999998753211 1 22 34443211 1110 00001223455666666655
Q ss_pred CCeEEEEEeCCCCccc----------ccccCCCCCCCC-ceEEEEeccccc------cccccCCCccEEecCCCHHHHHH
Q 042307 77 EKKILVILDNIWANLD----------LENVGIPFGDRG-CGVLMTARSQDV------LSSKMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~~----------~~~~~~~~~~~~-~~ilvTtr~~~~------~~~~~~~~~~~~l~~l~~~ea~~ 139 (1314)
..+.+|++|+++.... ...+..|.-..| -++|-+|..... ......-...+++++++.++..+
T Consensus 273 ~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~ 352 (731)
T TIGR02639 273 EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVK 352 (731)
T ss_pred cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHH
Confidence 5689999999874411 111212222233 345555543221 11011224578999999999999
Q ss_pred HHHHHh
Q 042307 140 LFKKLV 145 (1314)
Q Consensus 140 l~~~~~ 145 (1314)
++....
T Consensus 353 il~~~~ 358 (731)
T TIGR02639 353 ILKGLK 358 (731)
T ss_pred HHHHHH
Confidence 998665
No 216
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.42 E-value=0.0022 Score=60.28 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=22.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
||+|.|++|+||||+|++++++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998864
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.40 E-value=0.0087 Score=63.03 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=45.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|.+|+|||+||..+++....+ -..++++++ .++...+-..+. . .+ .....+.+.+. +.-+
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~-~-~~----~~~~~~l~~l~--~~dl 165 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFS-N-SE----TSEEQLLNDLS--NVDL 165 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHh-h-cc----ccHHHHHHHhc--cCCE
Confidence 6799999999999999999998643 235777753 334444333332 0 11 11223444553 4558
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
||+||+...
T Consensus 166 LvIDDig~~ 174 (244)
T PRK07952 166 LVIDEIGVQ 174 (244)
T ss_pred EEEeCCCCC
Confidence 888998654
No 218
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.39 E-value=0.011 Score=64.61 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=52.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc------cChhHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE------ESESGRARKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l 74 (1314)
++-|.|++|+||||||.+++...... -..++||+..+..+.. .+++++..... ....+....+....
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 46799999999999999988776533 3458899887755542 45666554211 11222233333333
Q ss_pred hcCCeEEEEEeCCCCc
Q 042307 75 RKEKKILVILDNIWAN 90 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~~ 90 (1314)
+++..-++|+|.|...
T Consensus 130 ~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 130 RSGAVDIIVVDSVAAL 145 (321)
T ss_pred hccCCcEEEEcchhhh
Confidence 3456779999997643
No 219
>PRK10536 hypothetical protein; Provisional
Probab=96.37 E-value=0.011 Score=61.47 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=25.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYA 35 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv 35 (1314)
+|.+.|++|+|||+||..++.+.-..+.|+.++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 47899999999999999999864322346554433
No 220
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.36 E-value=0.017 Score=61.87 Aligned_cols=88 Identities=31% Similarity=0.351 Sum_probs=53.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc----cCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc---------cChhHH--
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND----KLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE---------ESESGR-- 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~~-- 66 (1314)
+=|+|.+|+|||++|.+++-..... ..-..++||+-...+....+. +|++..+.+..+ ......
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~l~ 119 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEELL 119 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHHHH
Confidence 4589999999999999987664322 123459999998888776654 566665543211 111111
Q ss_pred --HHHHHHHHhcCCeEEEEEeCCCCc
Q 042307 67 --ARKLCERLRKEKKILVILDNIWAN 90 (1314)
Q Consensus 67 --~~~~~~~l~~~~~~LlvlD~v~~~ 90 (1314)
+..+...+.+.+--|||+|.+...
T Consensus 120 ~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 120 ELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred HHHHHHHhhccccceEEEEecchHHH
Confidence 222333333456678999987543
No 221
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.33 E-value=0.081 Score=61.86 Aligned_cols=172 Identities=18% Similarity=0.192 Sum_probs=104.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc------ccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN------DKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 75 (1314)
+.|.|-+|+|||..+..|...... -..|+ .+.|+.-.-..+++++..|..++...... ....+..+..++.
T Consensus 425 mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~~--~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 425 MYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERVT--WDAALEALNFRFT 501 (767)
T ss_pred EEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCccc--HHHHHHHHHHhhc
Confidence 679999999999999999986542 23454 45577777778999999999999766432 2233444444444
Q ss_pred ----cCCeEEEEEeCCCCccc-----ccccCCCCC-CCCceEEEEec--ccccccccc-------CCCccEEecCCCHHH
Q 042307 76 ----KEKKILVILDNIWANLD-----LENVGIPFG-DRGCGVLMTAR--SQDVLSSKM-------DCQNNFLVGALNESE 136 (1314)
Q Consensus 76 ----~~~~~LlvlD~v~~~~~-----~~~~~~~~~-~~~~~ilvTtr--~~~~~~~~~-------~~~~~~~l~~l~~~e 136 (1314)
+.+.+++++|+++.... +-.+ +.|+ .+++|++|.+= .-+.....+ -..+.+..++.+.++
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~-fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~q 580 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQDVLYNI-FDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQ 580 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccHHHHHHH-hcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHH
Confidence 24678999999875521 2222 2222 35677555432 222111101 123456778899999
Q ss_pred HHHHHHHHhCCC--CCCccHHHHHHHHHHHhCCcHHHHHHHHH
Q 042307 137 AWDLFKKLVGDK--IENNDLKAVAVDIAKACGGLPIAIVTIAR 177 (1314)
Q Consensus 137 a~~l~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 177 (1314)
-.+++..+.+.. ......+-+|++|+.-.|..-.|+.+.-+
T Consensus 581 Lq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 581 LQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred HHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999888877432 23333444555555555555555555433
No 222
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.33 E-value=0.0027 Score=61.41 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=45.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++... ..++-+.++...+..++....--.-+....... .+.+.. .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~------~l~~a~--~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDG------PLVRAM--RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-------CCCTTH--HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeecccccccccc------cccccc--cceeE
Confidence 68999999999999999999984 235567777777776654432211111100000 011111 17899
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
+|+|+++..
T Consensus 69 l~lDEin~a 77 (139)
T PF07728_consen 69 LVLDEINRA 77 (139)
T ss_dssp EEESSCGG-
T ss_pred EEECCcccC
Confidence 999998743
No 223
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.32 E-value=0.024 Score=60.13 Aligned_cols=88 Identities=25% Similarity=0.407 Sum_probs=55.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|.+|+||||||+++++..+.+ +-+.++++-+++.. .+.++.+.+.+.=... ..+.....+ .
T Consensus 72 ~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a 150 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTG 150 (274)
T ss_pred EEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 5799999999999999999998743 23557777776654 4566666655432111 111111222 1
Q ss_pred HHHHHHHh-c-CCeEEEEEeCCCCc
Q 042307 68 RKLCERLR-K-EKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~-~-~~~~LlvlD~v~~~ 90 (1314)
..+-++++ + ++++|+|+||+...
T Consensus 151 ~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 151 LTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHhcCCeEEEEEeChhHH
Confidence 23444444 2 79999999997544
No 224
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.066 Score=59.75 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=83.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC-----cc---ccChhHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK-----FY---EESESGRARKLCER 73 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~---~~~~~~~~~~~~~~ 73 (1314)
+.++|+.|+||+++|..++...--.+..+.. .++.. ...+.+...-..+ .. ..-..+.++.+.+.
T Consensus 27 ~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 27 LLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGHC----RGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred EeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 4589999999999999998876421111000 01110 0000110000000 00 01123444455554
Q ss_pred Hh----cCCeEEEEEeCCCCcc--c----ccccCCCCCCCCceEEE-EeccccccccccCCCccEEecCCCHHHHHHHHH
Q 042307 74 LR----KEKKILVILDNIWANL--D----LENVGIPFGDRGCGVLM-TARSQDVLSSKMDCQNNFLVGALNESEAWDLFK 142 (1314)
Q Consensus 74 l~----~~~~~LlvlD~v~~~~--~----~~~~~~~~~~~~~~ilv-Ttr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~ 142 (1314)
+. .+++-++|+|+++... . +..+--| ..++.+|. |.+...+.+.-..-...+.+.+++.+++.+.+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP--PENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLS 177 (334)
T ss_pred HhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHH
Confidence 44 2577799999988762 1 2222222 33445444 444455554222334568899999999998887
Q ss_pred HHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 143 KLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
+..+ .+ ++.+..+++.++|.|..
T Consensus 178 ~~~~--~~----~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 178 REVT--MS----QDALLAALRLSAGAPGA 200 (334)
T ss_pred HccC--CC----HHHHHHHHHHcCCCHHH
Confidence 6432 11 23367889999999964
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.0063 Score=67.29 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=54.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|..|+|||.||..+++....+. ..|+|+++.+ +...+...-. . .. .......+.+. .-=|
T Consensus 186 Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~------l~~~l~~~~~-~--~~---~~~~~~~~~l~--~~DL 249 (329)
T PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADE------LIEILREIRF-N--ND---KELEEVYDLLI--NCDL 249 (329)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHH------HHHHHHHHHh-c--cc---hhHHHHHHHhc--cCCE
Confidence 68999999999999999999886432 3578887433 3333322110 1 00 11111133442 4458
Q ss_pred EEEeCCCCc--cccc--ccCCCC---CCCCceEEEEeccc
Q 042307 82 VILDNIWAN--LDLE--NVGIPF---GDRGCGVLMTARSQ 114 (1314)
Q Consensus 82 lvlD~v~~~--~~~~--~~~~~~---~~~~~~ilvTtr~~ 114 (1314)
||+||+... ..|. .+.... -..+..+||||.-.
T Consensus 250 LIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 250 LIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999998554 2221 111001 11355688888764
No 226
>PHA00729 NTP-binding motif containing protein
Probab=96.29 E-value=0.013 Score=60.12 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|+|.+|+||||||..++++..
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998753
No 227
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.28 E-value=0.019 Score=62.64 Aligned_cols=85 Identities=24% Similarity=0.276 Sum_probs=51.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
+|+|+|++|+||||++..++.....+..-..|..|+..... ...+.+....+.++...........+....+.+. ..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~--~~ 273 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR--DK 273 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc--CC
Confidence 57899999999999999999887643111257777765432 2233344445566655543333344444444443 34
Q ss_pred EEEEEeCC
Q 042307 80 ILVILDNI 87 (1314)
Q Consensus 80 ~LlvlD~v 87 (1314)
-++++|..
T Consensus 274 d~vliDt~ 281 (282)
T TIGR03499 274 DLILIDTA 281 (282)
T ss_pred CEEEEeCC
Confidence 57888864
No 228
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.055 Score=60.73 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=68.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc--------------------CCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK--------------------LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE 61 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 61 (1314)
+.++|+.|+||||+|..+++..--.. +.|. .++.... ..
T Consensus 31 ~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~i~~~~--------------------~~ 89 (329)
T PRK08058 31 YLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HLVAPDG--------------------QS 89 (329)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEecccc--------------------cc
Confidence 46899999999999999988864221 2221 1121110 00
Q ss_pred ChhHHHHHHHHHHh----cCCeEEEEEeCCCCccc--ccccC--CCCCCCCceEEEEecc-ccccccccCCCccEEecCC
Q 042307 62 SESGRARKLCERLR----KEKKILVILDNIWANLD--LENVG--IPFGDRGCGVLMTARS-QDVLSSKMDCQNNFLVGAL 132 (1314)
Q Consensus 62 ~~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~~--~~~~~--~~~~~~~~~ilvTtr~-~~~~~~~~~~~~~~~l~~l 132 (1314)
...+.+..+.+.+. .+.+-++|+|+++.... ...+. +.-+..++.+|++|++ ..+.+........+++.++
T Consensus 90 i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~ 169 (329)
T PRK08058 90 IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPL 169 (329)
T ss_pred CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCC
Confidence 11233334444333 24567899999876622 22221 1112345666666654 3333322334567899999
Q ss_pred CHHHHHHHHHHH
Q 042307 133 NESEAWDLFKKL 144 (1314)
Q Consensus 133 ~~~ea~~l~~~~ 144 (1314)
+.++..+.+.+.
T Consensus 170 ~~~~~~~~L~~~ 181 (329)
T PRK08058 170 PPESLIQRLQEE 181 (329)
T ss_pred CHHHHHHHHHHc
Confidence 999998888653
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.25 E-value=0.021 Score=72.75 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=73.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC----CCEEEE-EEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL----FDEVVY-ADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.++|++|+|||++|..++.+...... -+..+| ++++ . +.. +.... ..-.+++..+.+.+.+
T Consensus 203 ~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~------~----l~a--g~~~~-ge~e~rl~~i~~~~~~ 269 (821)
T CHL00095 203 PILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG------L----LLA--GTKYR-GEFEERLKRIFDEIQE 269 (821)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH------H----Hhc--cCCCc-cHHHHHHHHHHHHHHh
Confidence 579999999999999999998753211 122333 3321 1 111 11111 1223455666666665
Q ss_pred CCeEEEEEeCCCCcc---------cccccCCCCC-CCCceEEEEecccccc------ccccCCCccEEecCCCHHHHHHH
Q 042307 77 EKKILVILDNIWANL---------DLENVGIPFG-DRGCGVLMTARSQDVL------SSKMDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~---------~~~~~~~~~~-~~~~~ilvTtr~~~~~------~~~~~~~~~~~l~~l~~~ea~~l 140 (1314)
.++++|++|++.... +...+..|.- ...-++|.+|...... +........+.++..+.++..++
T Consensus 270 ~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aI 349 (821)
T CHL00095 270 NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEI 349 (821)
T ss_pred cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHH
Confidence 678999999986431 1111212221 2234566665554321 10123345678888999998888
Q ss_pred HHHHh
Q 042307 141 FKKLV 145 (1314)
Q Consensus 141 ~~~~~ 145 (1314)
+....
T Consensus 350 Lr~l~ 354 (821)
T CHL00095 350 LFGLR 354 (821)
T ss_pred HHHHH
Confidence 76543
No 230
>PRK09354 recA recombinase A; Provisional
Probab=96.25 E-value=0.016 Score=63.91 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=53.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc------cChhHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE------ESESGRARKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l 74 (1314)
++-|+|++|+||||||.+++...... -..++||+..+..+. ..++.++..... .........+...+
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 46699999999999999988776533 345899998887664 245566554211 11122223333333
Q ss_pred hcCCeEEEEEeCCCCc
Q 042307 75 RKEKKILVILDNIWAN 90 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~~ 90 (1314)
+++..-++|+|.|...
T Consensus 135 ~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 135 RSGAVDLIVVDSVAAL 150 (349)
T ss_pred hcCCCCEEEEeChhhh
Confidence 3456779999997643
No 231
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.22 E-value=0.014 Score=63.70 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=51.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-----cChhHHHHHHHHHH-
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-----ESESGRARKLCERL- 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l- 74 (1314)
++-|.|++|+||||||.+++...... -..++||+..+..+.. .++.++..... ....+....+...+
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 46799999999999999988776532 3458999987766642 45555543211 11122222233333
Q ss_pred hcCCeEEEEEeCCCC
Q 042307 75 RKEKKILVILDNIWA 89 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~ 89 (1314)
..+..-++|+|.|..
T Consensus 130 ~s~~~~lIVIDSvaa 144 (325)
T cd00983 130 RSGAVDLIVVDSVAA 144 (325)
T ss_pred hccCCCEEEEcchHh
Confidence 345677999999754
No 232
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.0058 Score=57.22 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=23.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK 27 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~ 27 (1314)
|+|+||+|+||||+++++++..+.+.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 78999999999999999999988653
No 233
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.20 E-value=0.089 Score=58.76 Aligned_cols=184 Identities=16% Similarity=0.187 Sum_probs=113.1
Q ss_pred CEEEEcCCCchHHHHH-HHHHHHhhcccCCCEEEEEEeccCc---CHHHHHHHHHHHhCCC-------------------
Q 042307 1 MIGVYGIGGVGKTMLV-KEVARQARNDKLFDEVVYADVSQTP---DIKKIQGQIADKLGLK------------------- 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla-~~~~~~~~~~~~f~~~~wv~~~~~~---~~~~~~~~i~~~l~~~------------------- 57 (1314)
.|.|.||-|+||+.|+ .++.++.+ .+..|+|.+-. +-......+++++|-.
T Consensus 19 FIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nSiss~IDLa~qG 92 (431)
T PF10443_consen 19 FIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNSISSFIDLAVQG 92 (431)
T ss_pred EEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhh
Confidence 3889999999999999 77776643 28888887522 3334455555555422
Q ss_pred ----ccc--cChhHHHHHHHH----HHh-----------------------c--CCeEEEEEeCCCCcc-----------
Q 042307 58 ----FYE--ESESGRARKLCE----RLR-----------------------K--EKKILVILDNIWANL----------- 91 (1314)
Q Consensus 58 ----~~~--~~~~~~~~~~~~----~l~-----------------------~--~~~~LlvlD~v~~~~----------- 91 (1314)
..+ ++...++..+.. .|+ + ..+=++|+||.....
T Consensus 93 ltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~~~~~~iy~~la 172 (431)
T PF10443_consen 93 LTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKAEENDFIYDKLA 172 (431)
T ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccCcccchHHHHHH
Confidence 111 111222211111 111 0 125589999975432
Q ss_pred cccccCCCCCCCCceEEEEecccccccc---cc--CCCccEEecCCCHHHHHHHHHHHhCCCCCC---------------
Q 042307 92 DLENVGIPFGDRGCGVLMTARSQDVLSS---KM--DCQNNFLVGALNESEAWDLFKKLVGDKIEN--------------- 151 (1314)
Q Consensus 92 ~~~~~~~~~~~~~~~ilvTtr~~~~~~~---~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~--------------- 151 (1314)
+|.... ...+-.+||++|-+...... ++ ...+.+.+.-.+.+.|.++...+.......
T Consensus 173 eWAa~L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~ 250 (431)
T PF10443_consen 173 EWAASL--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDK 250 (431)
T ss_pred HHHHHH--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 233221 12244689999988664442 23 345678889999999999999988542110
Q ss_pred ----ccHHHHHHHHHHHhCCcHHHHHHHHHHHhcC--ChhHHHHHHH
Q 042307 152 ----NDLKAVAVDIAKACGGLPIAIVTIARALRNK--NTFEWKNALR 192 (1314)
Q Consensus 152 ----~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~--~~~~w~~~~~ 192 (1314)
..........++.+||==.-+..+++.++.. +.+..+++.+
T Consensus 251 ~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 251 SAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred ccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1244556788999999999999999999877 4444555544
No 234
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.019 Score=62.74 Aligned_cols=84 Identities=26% Similarity=0.354 Sum_probs=60.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc--ChhHHHHHHHHHHhcCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE--SESGRARKLCERLRKEK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~ 78 (1314)
+|.|-|-+|||||||..+++.+...+. .+.||+-.+. ..+ .+-.+++++....+. ......+.+.+.+.+.+
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 478899999999999999999998543 6888875554 332 344577777654332 22344677888888789
Q ss_pred eEEEEEeCCCCc
Q 042307 79 KILVILDNIWAN 90 (1314)
Q Consensus 79 ~~LlvlD~v~~~ 90 (1314)
+-++|+|.+...
T Consensus 169 p~lvVIDSIQT~ 180 (456)
T COG1066 169 PDLVVIDSIQTL 180 (456)
T ss_pred CCEEEEecccee
Confidence 999999997544
No 235
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.12 Score=57.58 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCC--CCCCCCce-EEEEeccccccccccCCCccEEecCCCH
Q 042307 64 SGRARKLCERLR----KEKKILVILDNIWANL--DLENVGI--PFGDRGCG-VLMTARSQDVLSSKMDCQNNFLVGALNE 134 (1314)
Q Consensus 64 ~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~~--~~~~~~~~-ilvTtr~~~~~~~~~~~~~~~~l~~l~~ 134 (1314)
.+.++.+.+.+. .+++-++|+|+++... ....+.. .-+.+++. |++|++...+.+....-...+.+.+++.
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCH
Confidence 344555555544 2456788899988762 2222211 11233444 5555555655543233356789999999
Q ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHH
Q 042307 135 SEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIV 173 (1314)
Q Consensus 135 ~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 173 (1314)
++..+.+... |. . . ...++...+|.|....
T Consensus 194 ~~~~~~L~~~-~~--~-~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 194 EAAAAWLAAQ-GV--A-D-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred HHHHHHHHHc-CC--C-h-----HHHHHHHcCCCHHHHH
Confidence 9999999775 21 1 1 1235777899997544
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=96.19 E-value=0.013 Score=63.00 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=25.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD 36 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~ 36 (1314)
|.|+|++|+|||+||..++...... -..+.|++
T Consensus 105 v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~ 137 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT 137 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 6899999999999999998775432 12455665
No 237
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.18 E-value=0.025 Score=60.18 Aligned_cols=45 Identities=29% Similarity=0.360 Sum_probs=33.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc----CCCEEEEEEeccCcCHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK----LFDEVVYADVSQTPDIKK 45 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ 45 (1314)
++.|.|.+|+|||++|.+++....... .-..++|++.....+...
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~r 69 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPER 69 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHH
Confidence 478999999999999999987754221 115689999877665443
No 238
>PRK04132 replication factor C small subunit; Provisional
Probab=96.15 E-value=0.085 Score=65.44 Aligned_cols=155 Identities=10% Similarity=0.039 Sum_probs=93.5
Q ss_pred Ec--CCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEEE
Q 042307 5 YG--IGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKILV 82 (1314)
Q Consensus 5 ~G--~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Ll 82 (1314)
.| |.|+||||+|..++++.-.++.-..++.+++++...+..+...+ +.+..... +...+.-++
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iI-k~~a~~~~--------------~~~~~~KVv 634 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKV-KEFARTKP--------------IGGASFKII 634 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHH-HHHHhcCC--------------cCCCCCEEE
Confidence 46 78999999999999987432222347889988866655443333 22211100 001246799
Q ss_pred EEeCCCCcc--cccccCC--CCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHH
Q 042307 83 ILDNIWANL--DLENVGI--PFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDLKAV 157 (1314)
Q Consensus 83 vlD~v~~~~--~~~~~~~--~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~ 157 (1314)
|+|+++... ....+.. .-+...+++|.+|.+.. +..........+++++++.++..+.+...+..... .-.++.
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i~~e~ 713 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEG 713 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CCCHHH
Confidence 999999873 2222211 11234566666655543 33322334678999999999999888876632111 112557
Q ss_pred HHHHHHHhCCcHH-HHHHH
Q 042307 158 AVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 158 ~~~i~~~~~g~Pl-ai~~~ 175 (1314)
...|++.++|-+. |+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 714 LQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 8899999999774 44444
No 239
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.029 Score=65.27 Aligned_cols=131 Identities=19% Similarity=0.259 Sum_probs=76.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc--CC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK--EK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~ 78 (1314)
+++.+|++|+|||.+|+.+++.... ++| =++++.-.|..++-.. +.+..+.-. .++.+.|.+ ..
T Consensus 440 IlCf~GPPGVGKTSI~kSIA~ALnR-kFf----RfSvGG~tDvAeIkGH-----RRTYVGAMP----GkiIq~LK~v~t~ 505 (906)
T KOG2004|consen 440 ILCFVGPPGVGKTSIAKSIARALNR-KFF----RFSVGGMTDVAEIKGH-----RRTYVGAMP----GKIIQCLKKVKTE 505 (906)
T ss_pred EEEEeCCCCCCcccHHHHHHHHhCC-ceE----EEeccccccHHhhccc-----ceeeeccCC----hHHHHHHHhhCCC
Confidence 4789999999999999999998862 333 2445555454443211 111111111 234444442 46
Q ss_pred eEEEEEeCCCCcc---------ccccc------------CCCCCCCCceEEEEeccccc---cccccCCCccEEecCCCH
Q 042307 79 KILVILDNIWANL---------DLENV------------GIPFGDRGCGVLMTARSQDV---LSSKMDCQNNFLVGALNE 134 (1314)
Q Consensus 79 ~~LlvlD~v~~~~---------~~~~~------------~~~~~~~~~~ilvTtr~~~~---~~~~~~~~~~~~l~~l~~ 134 (1314)
+=|+.+|.|+..- .+-++ +...+-.=|||++......+ +....+.-..|++.++..
T Consensus 506 NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~ 585 (906)
T KOG2004|consen 506 NPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVA 585 (906)
T ss_pred CceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccH
Confidence 7788999998651 11111 11111133677654333322 222344457899999999
Q ss_pred HHHHHHHHHHh
Q 042307 135 SEAWDLFKKLV 145 (1314)
Q Consensus 135 ~ea~~l~~~~~ 145 (1314)
+|-+++-+++.
T Consensus 586 eEKv~IA~~yL 596 (906)
T KOG2004|consen 586 EEKVKIAERYL 596 (906)
T ss_pred HHHHHHHHHhh
Confidence 99999888877
No 240
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.017 Score=66.56 Aligned_cols=86 Identities=22% Similarity=0.289 Sum_probs=52.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
+|+|+|++|+||||++.+++.....+.....+..++..... ...+......+.++...........+....+.+. ..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~--~~ 429 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR--DY 429 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--cC
Confidence 58899999999999999998876543223446666654322 2223333444555554444333444445555553 45
Q ss_pred EEEEEeCCC
Q 042307 80 ILVILDNIW 88 (1314)
Q Consensus 80 ~LlvlD~v~ 88 (1314)
-+||+|...
T Consensus 430 DLVLIDTaG 438 (559)
T PRK12727 430 KLVLIDTAG 438 (559)
T ss_pred CEEEecCCC
Confidence 688889865
No 241
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.05 Score=63.13 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=73.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.|||++|+.+++..... |+.+..+.-+. ... + .....+..+.+.-++..+++
T Consensus 471 VLlyGPPGC~KT~lAkalAne~~~n-------FlsvkgpEL~s-------k~v-----G-eSEr~ir~iF~kAR~~aP~I 530 (693)
T KOG0730|consen 471 VLLYGPPGCGKTLLAKALANEAGMN-------FLSVKGPELFS-------KYV-----G-ESERAIREVFRKARQVAPCI 530 (693)
T ss_pred EEEECCCCcchHHHHHHHhhhhcCC-------eeeccCHHHHH-------Hhc-----C-chHHHHHHHHHHHhhcCCeE
Confidence 6789999999999999999987632 34443321111 111 1 12334556666666667799
Q ss_pred EEEeCCCCccccc-------------ccCCCCCC----CCceEEEEecccc-ccccccC---CCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANLDLE-------------NVGIPFGD----RGCGVLMTARSQD-VLSSKMD---CQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~~~~-------------~~~~~~~~----~~~~ilvTtr~~~-~~~~~~~---~~~~~~l~~l~~~ea~~l 140 (1314)
+.||.++....-+ ++.....+ ++.-||-.|...+ +-...++ ....+.++.-+.+...++
T Consensus 531 iFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~I 610 (693)
T KOG0730|consen 531 IFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEI 610 (693)
T ss_pred EehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHH
Confidence 9999987652111 11111111 2223333344433 3322233 466788888888888899
Q ss_pred HHHHhC
Q 042307 141 FKKLVG 146 (1314)
Q Consensus 141 ~~~~~~ 146 (1314)
|+.++.
T Consensus 611 lk~~~k 616 (693)
T KOG0730|consen 611 LKQCAK 616 (693)
T ss_pred HHHHHh
Confidence 999884
No 242
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.08 E-value=0.071 Score=61.30 Aligned_cols=116 Identities=24% Similarity=0.285 Sum_probs=70.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
++.|.|+-++||||+++.+....... +++++..+.. +..+. .+..+ .+. .+...++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~~~----------------~~~-~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDLLR----------------AYI-ELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHHHH----------------HHH-HhhccCC
Confidence 47899999999999997776665422 5666544322 11111 11111 111 1111267
Q ss_pred EEEEEeCCCCcccccccCCCCCCCCc-eEEEEecccccccc-----ccCCCccEEecCCCHHHHHH
Q 042307 80 ILVILDNIWANLDLENVGIPFGDRGC-GVLMTARSQDVLSS-----KMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 80 ~LlvlD~v~~~~~~~~~~~~~~~~~~-~ilvTtr~~~~~~~-----~~~~~~~~~l~~l~~~ea~~ 139 (1314)
..+++|.|....+|+.........+- +|++|+-+...... ..+-...+++-||+-.|-..
T Consensus 96 ~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 96 SYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 89999999999998876322222221 78888776553322 23446678999999998865
No 243
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.06 E-value=0.043 Score=71.76 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
|.++|++|+|||.||+++|.+..+
T Consensus 1633 ILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1633 ILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred eEEECCCCCCHHHHHHHHHHhcCC
Confidence 679999999999999999998764
No 244
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.06 E-value=0.0033 Score=64.17 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=54.4
Q ss_pred hhCCCcccEEEecCC--cCC-CCCcccccCccCcEEEcCCCcCCCc---cccCCCCCCCEEEccCccCcccc----hhhc
Q 042307 374 FTRLTELRVLDFTDM--HLL-SLPSSLHLLVNLRTLCLDNGVLGDV---AVIGELKQLEILSFQGSNIEQLP----REIG 443 (1314)
Q Consensus 374 f~~l~~L~~L~Ls~n--~~~-~lp~~~~~l~~L~~L~L~~~~~~~~---~~~~~L~~L~~L~L~~~~i~~lp----~~i~ 443 (1314)
|..+++|+.|.+|.| ++. .++-...++++|++|++++|+++.+ ....++.+|..||+.+|..+.+- .-+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 355667777777777 333 3444445567777777777776655 34556677788888888766552 2256
Q ss_pred CCCCCCEEeeccC
Q 042307 444 QLTRLRSLNLSSC 456 (1314)
Q Consensus 444 ~L~~L~~L~L~~~ 456 (1314)
-+++|.+|+-..+
T Consensus 141 ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 141 LLPSLKYLDGCDV 153 (260)
T ss_pred Hhhhhcccccccc
Confidence 6788888876654
No 245
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.069 Score=53.60 Aligned_cols=69 Identities=28% Similarity=0.380 Sum_probs=45.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.|||-||+.+++.-... | |.+-.. ..+.+.+|.. ...+..+.+--+++.+.+
T Consensus 192 vllygppg~gktml~kava~~t~a~--f-----irvvgs-------efvqkylgeg------prmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 192 VLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS-------EFVQKYLGEG------PRMVRDVFRLAKENAPSI 251 (408)
T ss_pred eEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH-------HHHHHHhccC------cHHHHHHHHHHhccCCcE
Confidence 6789999999999999999876522 3 322221 1223344422 344556666666678899
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
|.+|.++..
T Consensus 252 ifideidai 260 (408)
T KOG0727|consen 252 IFIDEIDAI 260 (408)
T ss_pred EEeehhhhH
Confidence 999998765
No 246
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.03 E-value=0.037 Score=68.12 Aligned_cols=144 Identities=24% Similarity=0.332 Sum_probs=80.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.++...... | +.++.++ +... ..+ .....+..+........+++
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~---~~~~------~~g------~~~~~~~~~f~~a~~~~P~I 247 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD---FVEM------FVG------VGASRVRDMFEQAKKAAPCI 247 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH---hHHh------hhc------ccHHHHHHHHHHHHhcCCcE
Confidence 6899999999999999998876532 2 2333222 1100 001 11223333444444467899
Q ss_pred EEEeCCCCccc----------------ccccCC---CC-CCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LENVGI---PF-GDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~~~---~~-~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
+++|+++.... +..+.. .+ ...+.-+|.||........++ +....+.++..+.++.
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 99999876411 111100 01 123445566777765433221 3456788888899999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCC
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGG 167 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g 167 (1314)
.+++..+.......... ....+++.+.|
T Consensus 328 ~~Il~~~~~~~~l~~~~--d~~~la~~t~G 355 (644)
T PRK10733 328 EQILKVHMRRVPLAPDI--DAAIIARGTPG 355 (644)
T ss_pred HHHHHHHhhcCCCCCcC--CHHHHHhhCCC
Confidence 99999888542211111 13346666655
No 247
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.01 E-value=0.024 Score=62.43 Aligned_cols=88 Identities=26% Similarity=0.274 Sum_probs=53.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc----cCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc---------ChhH--
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND----KLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE---------SESG-- 65 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------~~~~-- 65 (1314)
++-|+|++|+|||++|.+++-..... ..=..++||+....++...+. ++++.++...... ...+
T Consensus 98 iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e~~ 176 (313)
T TIGR02238 98 ITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSEHQ 176 (313)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHHHH
Confidence 35699999999999999987543211 112469999998887777654 4677776542210 0111
Q ss_pred --HHHHHHHHHhcCCeEEEEEeCCCC
Q 042307 66 --RARKLCERLRKEKKILVILDNIWA 89 (1314)
Q Consensus 66 --~~~~~~~~l~~~~~~LlvlD~v~~ 89 (1314)
.+..+...+.+.+--|+|+|.+..
T Consensus 177 ~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 177 MELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHhhccCCCEEEEEcchH
Confidence 122233333334556788888653
No 248
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.97 E-value=0.042 Score=69.43 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=79.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++..... .+.++...- .... .+ .....+..+.+......+.+
T Consensus 215 iLL~GppGtGKT~laraia~~~~~~-----~i~i~~~~i----------~~~~----~g-~~~~~l~~lf~~a~~~~p~i 274 (733)
T TIGR01243 215 VLLYGPPGTGKTLLAKAVANEAGAY-----FISINGPEI----------MSKY----YG-ESEERLREIFKEAEENAPSI 274 (733)
T ss_pred EEEECCCCCChHHHHHHHHHHhCCe-----EEEEecHHH----------hccc----cc-HHHHHHHHHHHHHHhcCCcE
Confidence 6799999999999999999876421 233432211 0000 00 11233444555544467789
Q ss_pred EEEeCCCCccc-------------ccccC---CCCCCCCceEEE-Eecccc-cccc---ccCCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANLD-------------LENVG---IPFGDRGCGVLM-TARSQD-VLSS---KMDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~~-------------~~~~~---~~~~~~~~~ilv-Ttr~~~-~~~~---~~~~~~~~~l~~l~~~ea~~l 140 (1314)
+++|+++.... ...+. ......+..++| ||+... +... .......+.++..+.++..++
T Consensus 275 l~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~I 354 (733)
T TIGR01243 275 IFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEI 354 (733)
T ss_pred EEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHH
Confidence 99999865310 01110 111123333444 454432 2111 012345678888899999999
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHhCCcHH
Q 042307 141 FKKLVGDKIENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
+..+........ ......+++.+.|.--
T Consensus 355 l~~~~~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 355 LKVHTRNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred HHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence 987663221111 1225578888887643
No 249
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.0092 Score=55.92 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=36.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFY 59 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 59 (1314)
+|+|.|++|+||||+|+.++++..-. .++ .-.+++++++..|+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~vs------aG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LVS------AGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------eee------ccHHHHHHHHHcCCCHH
Confidence 58999999999999999999988622 222 23568888888888754
No 250
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.94 E-value=0.02 Score=58.53 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
||.|.|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999998764
No 251
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.004 Score=63.54 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=32.3
Q ss_pred cEEEcCCCcCCCccccCCCCCCCEEEccCc--cCc-ccchhhcCCCCCCEEeeccCCCCC---ccchhhhcCCCCCcEEE
Q 042307 404 RTLCLDNGVLGDVAVIGELKQLEILSFQGS--NIE-QLPREIGQLTRLRSLNLSSCYQLK---AISSNVISNLSQLEELY 477 (1314)
Q Consensus 404 ~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~---~~~~~~l~~l~~L~~L~ 477 (1314)
+.|.+.++.++....+-.|++|++|.++.| ++. .++....++++|++|++++| ++. .+++ +.++.+|..|+
T Consensus 46 e~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~~l~nL~~Ld 122 (260)
T KOG2739|consen 46 ELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LKELENLKSLD 122 (260)
T ss_pred hhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hhhhcchhhhh
Confidence 333333333333334444444445555444 222 33333333455555555554 222 2222 34444555555
Q ss_pred cCCCcc
Q 042307 478 LGDTFI 483 (1314)
Q Consensus 478 l~~~~~ 483 (1314)
+..|..
T Consensus 123 l~n~~~ 128 (260)
T KOG2739|consen 123 LFNCSV 128 (260)
T ss_pred cccCCc
Confidence 554433
No 252
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.86 E-value=0.027 Score=63.65 Aligned_cols=84 Identities=24% Similarity=0.288 Sum_probs=53.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc--ChhHHHHHHHHHHhcCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE--SESGRARKLCERLRKEK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~ 78 (1314)
++.|.|.+|+||||++.+++...... -..++|++..+. ..+ ....++.++....+. .....+..+.+.+.+.+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~q-i~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQ-IKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHH-HHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 47899999999999999999887643 246889886543 333 233355666543221 11123445555555557
Q ss_pred eEEEEEeCCCC
Q 042307 79 KILVILDNIWA 89 (1314)
Q Consensus 79 ~~LlvlD~v~~ 89 (1314)
.-++|+|.+..
T Consensus 159 ~~lVVIDSIq~ 169 (372)
T cd01121 159 PDLVIIDSIQT 169 (372)
T ss_pred CcEEEEcchHH
Confidence 77899999743
No 253
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.86 E-value=0.026 Score=59.91 Aligned_cols=42 Identities=26% Similarity=0.432 Sum_probs=32.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKK 45 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 45 (1314)
++.|+|.+|+|||++|.+++...... -..++|++.. ..+...
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPER 66 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHH
Confidence 46899999999999999999877533 3569999987 444433
No 254
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.86 E-value=0.018 Score=58.24 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=27.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD 36 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~ 36 (1314)
+|++.|+.|+||||+|+.++..... .+..+++++
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~~ 42 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLD 42 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEe
Confidence 5899999999999999999998863 355566664
No 255
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.042 Score=60.62 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=56.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc-CC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRK-EK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~ 78 (1314)
+|+++|+.|+||||++..++.....+. ..+.+|++.... ...+-++..++.++...........+....+.+.. +.
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 578999999999999999998775332 357788876533 23445566677777655433344444444444442 34
Q ss_pred eEEEEEeCCCC
Q 042307 79 KILVILDNIWA 89 (1314)
Q Consensus 79 ~~LlvlD~v~~ 89 (1314)
.-++++|-...
T Consensus 286 ~D~VLIDTAGr 296 (407)
T PRK12726 286 VDHILIDTVGR 296 (407)
T ss_pred CCEEEEECCCC
Confidence 57888897754
No 256
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.017 Score=60.50 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND 26 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~ 26 (1314)
+|.++|++|+|||+|++.+++....+
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheee
Confidence 47899999999999999999998763
No 257
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.80 E-value=0.034 Score=56.10 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=47.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCcccc----ChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEE----SESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~ 75 (1314)
++.+.|++|+||||+++.++....... ..++.++..... ...+.+...++..+...... +..+...+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998876431 246667655322 22333444445554332211 11222223333333
Q ss_pred cCCeEEEEEeCCCC
Q 042307 76 KEKKILVILDNIWA 89 (1314)
Q Consensus 76 ~~~~~LlvlD~v~~ 89 (1314)
....-++|+|-...
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 33444566887543
No 258
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.78 E-value=0.047 Score=60.63 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=39.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc----ccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN----DKLFDEVVYADVSQTPDIKKIQGQIADKLGLK 57 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 57 (1314)
+-|.|.+|+|||+++.+++-.... ...-..++||+....+....+ .++++.++..
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl-~~ia~~~g~d 187 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRI-VPIAERFGMD 187 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHH-HHHHHHcCCC
Confidence 458999999999999998754321 112246999999888887765 4466777654
No 259
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.77 E-value=0.056 Score=68.39 Aligned_cols=133 Identities=23% Similarity=0.276 Sum_probs=67.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
++.++|++|+|||++|+.+++.... .|.. ++++...+..++... .....+.........+. ... ..+-
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~--~~~~---i~~~~~~~~~~i~g~-----~~~~~g~~~g~i~~~l~-~~~-~~~~ 416 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNR--KFVR---FSLGGVRDEAEIRGH-----RRTYVGAMPGRIIQGLK-KAK-TKNP 416 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC--CeEE---EeCCCcccHHHHcCC-----CCceeCCCCchHHHHHH-HhC-cCCC
Confidence 3678999999999999999998752 2322 233332232222110 01111111111112222 212 2334
Q ss_pred EEEEeCCCCccc---------ccc---------cC-----CCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHH
Q 042307 81 LVILDNIWANLD---------LEN---------VG-----IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESE 136 (1314)
Q Consensus 81 LlvlD~v~~~~~---------~~~---------~~-----~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~e 136 (1314)
+++||+++.... +-+ +. .+....+..+|.||.... +..........+++.+++.+|
T Consensus 417 villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e 496 (775)
T TIGR00763 417 LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEE 496 (775)
T ss_pred EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHH
Confidence 789999876521 100 10 011112334455555543 222123334578999999999
Q ss_pred HHHHHHHHh
Q 042307 137 AWDLFKKLV 145 (1314)
Q Consensus 137 a~~l~~~~~ 145 (1314)
..+++.++.
T Consensus 497 ~~~I~~~~l 505 (775)
T TIGR00763 497 KLEIAKKYL 505 (775)
T ss_pred HHHHHHHHH
Confidence 888887654
No 260
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.024 Score=64.09 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=54.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc--cCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND--KLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKE 77 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 77 (1314)
+|+++|+.|+||||.+.+++...... ..-..|..+++.... ...+-+...++.++.+.........+......+ .
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~--~ 253 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS--K 253 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--C
Confidence 57899999999999999999876532 112346666665422 222335666777777654444333344333333 4
Q ss_pred CeEEEEEeCCCCc
Q 042307 78 KKILVILDNIWAN 90 (1314)
Q Consensus 78 ~~~LlvlD~v~~~ 90 (1314)
..-++++|.+...
T Consensus 254 ~~DlVLIDTaGr~ 266 (388)
T PRK12723 254 DFDLVLVDTIGKS 266 (388)
T ss_pred CCCEEEEcCCCCC
Confidence 5678888987543
No 261
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.74 E-value=0.035 Score=64.19 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=50.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcC-HHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPD-IKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
+|+++|++|+||||++..++........-..|..|+...... ..+.+...++.++................+.+ ...
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~--~~~ 300 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL--RDC 300 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--CCC
Confidence 478999999999999999887765111123577787654321 22334444555666544333333333333333 346
Q ss_pred EEEEEeCC
Q 042307 80 ILVILDNI 87 (1314)
Q Consensus 80 ~LlvlD~v 87 (1314)
-++|+|..
T Consensus 301 DlVlIDt~ 308 (424)
T PRK05703 301 DVILIDTA 308 (424)
T ss_pred CEEEEeCC
Confidence 78889965
No 262
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.032 Score=62.73 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=47.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
+|+++|++|+||||+|.+++........+ .+..++..... .....+...++.++..... ......+...+.+...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~---~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYP---VKDIKKFKETLARDGS 300 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeee---hHHHHHHHHHHHhCCC
Confidence 47899999999999999999765322122 35555543322 2233344445566654332 2223445555543444
Q ss_pred EEEEEeC
Q 042307 80 ILVILDN 86 (1314)
Q Consensus 80 ~LlvlD~ 86 (1314)
-++|+|-
T Consensus 301 D~VLIDT 307 (432)
T PRK12724 301 ELILIDT 307 (432)
T ss_pred CEEEEeC
Confidence 5688894
No 263
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.73 E-value=0.042 Score=56.55 Aligned_cols=83 Identities=30% Similarity=0.531 Sum_probs=52.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH------
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA------ 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~------ 67 (1314)
++|.|.+|+|||+|+.++++... -+.++++-+++.. .+.++.+.+...-... ..+.....+.
T Consensus 18 ~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a 93 (215)
T PF00006_consen 18 IGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTA 93 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHH
T ss_pred EEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccc
Confidence 68999999999999999999986 4456888887653 5566666654331111 1111111111
Q ss_pred HHHHHHHh-cCCeEEEEEeCCC
Q 042307 68 RKLCERLR-KEKKILVILDNIW 88 (1314)
Q Consensus 68 ~~~~~~l~-~~~~~LlvlD~v~ 88 (1314)
-.+-++++ +++++|+++||+.
T Consensus 94 ~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 94 LTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhhHHHhhcCCceeehhhhhH
Confidence 12233333 4899999999964
No 264
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.69 E-value=0.04 Score=68.23 Aligned_cols=132 Identities=19% Similarity=0.231 Sum_probs=72.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-C---CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-L---FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKE 77 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 77 (1314)
+.++|++|+|||++|+.++....... . .+..+|.. ++. .+.. +.... ..-...+..+.+.+.+.
T Consensus 210 ~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~lla--G~~~~-Ge~e~rl~~l~~~l~~~ 277 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLA--GTKYR-GDFEKRFKALLKQLEQD 277 (758)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhc--ccchh-hhHHHHHHHHHHHHHhc
Confidence 57899999999999999998754321 1 12233321 111 1110 11111 12233455666666656
Q ss_pred CeEEEEEeCCCCcc----------cccccCCCCCCC-CceEEEEecccccc------ccccCCCccEEecCCCHHHHHHH
Q 042307 78 KKILVILDNIWANL----------DLENVGIPFGDR-GCGVLMTARSQDVL------SSKMDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 78 ~~~LlvlD~v~~~~----------~~~~~~~~~~~~-~~~ilvTtr~~~~~------~~~~~~~~~~~l~~l~~~ea~~l 140 (1314)
.+.+|++|+++... +...+..|.-.. .-++|-+|...... ....+-...+.+++.+.+++.++
T Consensus 278 ~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~I 357 (758)
T PRK11034 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQI 357 (758)
T ss_pred CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHH
Confidence 77899999987431 111111222222 33455555443311 10112335799999999999999
Q ss_pred HHHHh
Q 042307 141 FKKLV 145 (1314)
Q Consensus 141 ~~~~~ 145 (1314)
+....
T Consensus 358 L~~~~ 362 (758)
T PRK11034 358 INGLK 362 (758)
T ss_pred HHHHH
Confidence 98665
No 265
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.062 Score=64.71 Aligned_cols=126 Identities=24% Similarity=0.316 Sum_probs=74.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.|||.+|+.+++.... .| +.+... ++ .. ...+ .....+..+...-++..++.
T Consensus 279 iLl~GpPGtGKT~lAkava~~~~~--~f-----i~v~~~-~l-------~s----k~vG-esek~ir~~F~~A~~~~p~i 338 (494)
T COG0464 279 VLLYGPPGTGKTLLAKAVALESRS--RF-----ISVKGS-EL-------LS----KWVG-ESEKNIRELFEKARKLAPSI 338 (494)
T ss_pred eEEECCCCCCHHHHHHHHHhhCCC--eE-----EEeeCH-HH-------hc----cccc-hHHHHHHHHHHHHHcCCCcE
Confidence 678999999999999999997652 23 222221 11 00 0011 11233444444444578999
Q ss_pred EEEeCCCCcccccc-------------cCCCCC----CCCceEEEEeccccccccc----cCCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANLDLEN-------------VGIPFG----DRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~~~~~-------------~~~~~~----~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea~~l 140 (1314)
|.+|+++....... +..... ..+..||-+|........+ .+....+.++.-+.++..+.
T Consensus 339 iFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i 418 (494)
T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEI 418 (494)
T ss_pred EEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHH
Confidence 99999876532221 111111 1333455556555433321 13456788999999999999
Q ss_pred HHHHhCC
Q 042307 141 FKKLVGD 147 (1314)
Q Consensus 141 ~~~~~~~ 147 (1314)
|..+..+
T Consensus 419 ~~~~~~~ 425 (494)
T COG0464 419 FKIHLRD 425 (494)
T ss_pred HHHHhcc
Confidence 9999964
No 266
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.67 E-value=0.022 Score=68.40 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|+|++|+||||+++.++....
T Consensus 112 illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 378999999999999999998765
No 267
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.00064 Score=68.91 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=41.7
Q ss_pred cCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccch-hhhcCCCCCcEEEcCC
Q 042307 402 NLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISS-NVISNLSQLEELYLGD 480 (1314)
Q Consensus 402 ~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~-~~l~~l~~L~~L~l~~ 480 (1314)
+.+.|+.-+|.+.++..+.+|+.|++|.|+-|+|+.+- .+..+++|+.|.|..| .+.++.+ ..+.++++|+.|.|..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhcc
Confidence 33444555555555555555666666666666655552 2455566666666554 3444432 1244556666666655
Q ss_pred Cc
Q 042307 481 TF 482 (1314)
Q Consensus 481 ~~ 482 (1314)
|.
T Consensus 98 NP 99 (388)
T KOG2123|consen 98 NP 99 (388)
T ss_pred CC
Confidence 53
No 268
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.62 E-value=0.059 Score=59.66 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=58.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
||+++|+.|+||||-.++++.+..-...-..|..|....-. ...+-++..++-++.+..-......+..-...+. ..
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~--~~ 282 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR--DC 282 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh--cC
Confidence 68999999999998777777666521223457777765432 4455566678888888877777776666666664 33
Q ss_pred EEEEEeCCC
Q 042307 80 ILVILDNIW 88 (1314)
Q Consensus 80 ~LlvlD~v~ 88 (1314)
-++.+|=+.
T Consensus 283 d~ILVDTaG 291 (407)
T COG1419 283 DVILVDTAG 291 (407)
T ss_pred CEEEEeCCC
Confidence 566667654
No 269
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.62 E-value=0.056 Score=56.51 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=28.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
+|+|.|.+|+||||+|+.++........-..+..++...-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 6899999999999999999988753111123555655443
No 270
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.62 E-value=0.045 Score=58.50 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=47.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
++++|.+|+|||.||..++++.. +.. ..|.+++ ..+....+....... ....++.+.+ .+-=|
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~~~~-------~~~~~l~~~l--~~~dl 170 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAFDEG-------RLEEKLLREL--KKVDL 170 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHHhcC-------chHHHHHHHh--hcCCE
Confidence 68999999999999999999988 322 3477776 344455555544321 1122344434 35568
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
|||||+...
T Consensus 171 LIiDDlG~~ 179 (254)
T COG1484 171 LIIDDIGYE 179 (254)
T ss_pred EEEecccCc
Confidence 999998654
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.58 E-value=0.052 Score=55.75 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
++.|.|++|+|||++|.+++...... =..++|++..+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC
Confidence 47899999999999999998876532 235888887553
No 272
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0054 Score=36.82 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=15.3
Q ss_pred CCCEEEccCccCcccchhhcCC
Q 042307 424 QLEILSFQGSNIEQLPREIGQL 445 (1314)
Q Consensus 424 ~L~~L~L~~~~i~~lp~~i~~L 445 (1314)
+|++||+++|+++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4677788888777777766543
No 273
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.043 Score=60.74 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=51.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc-CC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRK-EK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~ 78 (1314)
+|+|+|++|+||||++..++.....++ ..+..++..... ...+-+...++.++...........+......+.+ .+
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 489999999999999999998876332 246666654332 22223344555666654433333444444444432 23
Q ss_pred eEEEEEeCCCC
Q 042307 79 KILVILDNIWA 89 (1314)
Q Consensus 79 ~~LlvlD~v~~ 89 (1314)
.-++++|-...
T Consensus 321 ~DvVLIDTaGR 331 (436)
T PRK11889 321 VDYILIDTAGK 331 (436)
T ss_pred CCEEEEeCccc
Confidence 45778887644
No 274
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.54 E-value=0.075 Score=66.88 Aligned_cols=79 Identities=24% Similarity=0.240 Sum_probs=47.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|+.|+|||++|+.+++... ...+.+++++...... +.+.++.. ++--..+....+.+.++.....+
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~----~~~lig~~-~gyvg~~~~~~l~~~~~~~p~~V 556 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT----VSRLIGAP-PGYVGFEQGGLLTEAVRKHPHCV 556 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc----HHHHhcCC-CCCcccchhhHHHHHHHhCCCeE
Confidence 57899999999999999998763 2356677655322111 12222221 11111112233445555567789
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
++||+++..
T Consensus 557 vllDEieka 565 (731)
T TIGR02639 557 LLLDEIEKA 565 (731)
T ss_pred EEEechhhc
Confidence 999999866
No 275
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.54 E-value=0.061 Score=56.77 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=33.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGL 56 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 56 (1314)
++.|.|.+|+||||+|.+++.....+. ..++|++... +..+..+.+ ++++.
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 378999999999999988877654222 3477777443 445555554 34443
No 276
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.54 E-value=0.04 Score=58.15 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=30.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP 41 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~ 41 (1314)
++.|.|.+|+||||+|.+++...... -..++|++.....
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~ 59 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLS 59 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCC
Confidence 46799999999999999999887532 3458899875544
No 277
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.53 E-value=0.19 Score=57.00 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=29.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccC-CCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKL-FDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~-f~~~~wv~~~~ 39 (1314)
+|+|.|.=|+|||++.+.+.+..+.+.. --.++|++...
T Consensus 22 ~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~ 61 (325)
T PF07693_consen 22 VIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWE 61 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcccc
Confidence 5899999999999999999999885511 12255555543
No 278
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.041 Score=57.70 Aligned_cols=87 Identities=23% Similarity=0.328 Sum_probs=54.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc-ccCC-------CEEEEEEeccC-cCHHHHHHHHHHHhCCCccccCh---------
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN-DKLF-------DEVVYADVSQT-PDIKKIQGQIADKLGLKFYEESE--------- 63 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~-~~~f-------~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~--------- 63 (1314)
+.|.|.||+||||++.+.+-.... ++.| ..|+||++... .++-.-++.+..+++.+..+...
T Consensus 92 ~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~Ga 171 (402)
T COG3598 92 SILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSGA 171 (402)
T ss_pred EEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccccC
Confidence 456699999999999887755433 2333 46899998764 36667777888888776432111
Q ss_pred ------h--HHHHHHHHHHhcCCeEEEEEeCCC
Q 042307 64 ------S--GRARKLCERLRKEKKILVILDNIW 88 (1314)
Q Consensus 64 ------~--~~~~~~~~~l~~~~~~LlvlD~v~ 88 (1314)
. ...++....+.+.++-++|+|-+-
T Consensus 172 a~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 172 ADESDVLSPKLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred CCccccccHHHHHHHHHHHHHhCCCeEEEcchh
Confidence 0 112233333334567788888753
No 279
>PTZ00035 Rad51 protein; Provisional
Probab=95.52 E-value=0.063 Score=60.01 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=38.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc----ccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN----DKLFDEVVYADVSQTPDIKKIQGQIADKLGLK 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 57 (1314)
++.|+|.+|+||||++..++-.... ...-..++||+....+.... ..++++.++..
T Consensus 120 iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~ 179 (337)
T PTZ00035 120 ITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLD 179 (337)
T ss_pred EEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCC
Confidence 4679999999999999998765431 11224588999877666555 44556666544
No 280
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.50 E-value=0.065 Score=59.96 Aligned_cols=56 Identities=30% Similarity=0.403 Sum_probs=39.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc----CCCEEEEEEeccCcCHHHHHHHHHHHhCCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK----LFDEVVYADVSQTPDIKKIQGQIADKLGLK 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 57 (1314)
|+-|+|.+|+||||+|.+++....... .-..++||+..+.++...+ .++++.++..
T Consensus 97 i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl-~~~~~~~gl~ 156 (310)
T TIGR02236 97 ITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI-MQMAEARGLD 156 (310)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 467999999999999999987754211 1136999999887776654 3455555543
No 281
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.50 E-value=0.12 Score=66.22 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=72.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-----CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-----FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.++|++|+|||++|..++++...... -..++.++++. +.. +.... ..-...+..+.+.+.+
T Consensus 197 ~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~----------l~a--~~~~~-g~~e~~l~~~l~~~~~ 263 (852)
T TIGR03346 197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA----------LIA--GAKYR-GEFEERLKAVLNEVTK 263 (852)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH----------Hhh--cchhh-hhHHHHHHHHHHHHHh
Confidence 468999999999999999998753211 12244444211 100 00001 1122345555555543
Q ss_pred -CCeEEEEEeCCCCccc---------ccccCCCCCCCC-ceEEEEeccccc------cccccCCCccEEecCCCHHHHHH
Q 042307 77 -EKKILVILDNIWANLD---------LENVGIPFGDRG-CGVLMTARSQDV------LSSKMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 77 -~~~~LlvlD~v~~~~~---------~~~~~~~~~~~~-~~ilvTtr~~~~------~~~~~~~~~~~~l~~l~~~ea~~ 139 (1314)
+++.+|++|++..... ...+..|.-..| -++|-+|..... ..........+.++..+.++..+
T Consensus 264 ~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~ 343 (852)
T TIGR03346 264 SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTIS 343 (852)
T ss_pred cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHH
Confidence 4689999999875421 112222322233 345544444322 11012234568899999999999
Q ss_pred HHHHHh
Q 042307 140 LFKKLV 145 (1314)
Q Consensus 140 l~~~~~ 145 (1314)
++....
T Consensus 344 iL~~~~ 349 (852)
T TIGR03346 344 ILRGLK 349 (852)
T ss_pred HHHHHH
Confidence 987665
No 282
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.50 E-value=0.047 Score=60.41 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=38.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc----cCCCEEEEEEeccCcCHHHHHHHHHHHhCCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND----KLFDEVVYADVSQTPDIKKIQGQIADKLGLK 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 57 (1314)
++.|.|.+|+||||+|..++...... ..-..++||+....+.... ..++++.++..
T Consensus 98 i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 98 ITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 46799999999999999988633211 1123689999888766654 44556666544
No 283
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.49 E-value=0.041 Score=52.37 Aligned_cols=113 Identities=19% Similarity=0.376 Sum_probs=38.5
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCcCCCc--cccCCCCCCCE
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEI 427 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~ 427 (1314)
.+++|+.+.+..+ ...++...|..+.+|+.+.+..+ +..++. .|.++.+|+.+.+.. .+..+ ..+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 4445555555421 23455555555555555555543 444432 344444555555543 22211 33444555555
Q ss_pred EEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCC
Q 042307 428 LSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLS 471 (1314)
Q Consensus 428 L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~ 471 (1314)
+++..+ +..++ ..+.+. +|+.+.+.. .+..++...+.+..
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~ 126 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCT 126 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG---
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccc
Confidence 555443 33332 223333 455444443 23344444344333
No 284
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.47 E-value=0.014 Score=47.83 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999886
No 285
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.46 E-value=0.073 Score=66.57 Aligned_cols=133 Identities=19% Similarity=0.270 Sum_probs=71.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
+|.++|++|+||||+|+.++..... .|.. ++++...+..++...-....+ .........+.. .. ..+-
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~l~~--~~~~---i~~~~~~d~~~i~g~~~~~~g-----~~~G~~~~~l~~-~~-~~~~ 418 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGR--KYVR---MALGGVRDEAEIRGHRRTYIG-----SMPGKLIQKMAK-VG-VKNP 418 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--CEEE---EEcCCCCCHHHhccchhccCC-----CCCcHHHHHHHh-cC-CCCC
Confidence 3789999999999999999987652 2322 334443333322211111111 111111122211 11 2344
Q ss_pred EEEEeCCCCccc-------------ccc-----c-----CCCCCCCCceEEEEeccccccccccCCCccEEecCCCHHHH
Q 042307 81 LVILDNIWANLD-------------LEN-----V-----GIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 81 LlvlD~v~~~~~-------------~~~-----~-----~~~~~~~~~~ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ea 137 (1314)
++++|.++.... ++. + ..++.-.+..+|.|++...+.....+-...+.+.+++.+|-
T Consensus 419 villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek 498 (784)
T PRK10787 419 LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEK 498 (784)
T ss_pred EEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHH
Confidence 788999875521 110 0 01112234445566665554443344456789999999999
Q ss_pred HHHHHHHh
Q 042307 138 WDLFKKLV 145 (1314)
Q Consensus 138 ~~l~~~~~ 145 (1314)
.++..++.
T Consensus 499 ~~Ia~~~L 506 (784)
T PRK10787 499 LNIAKRHL 506 (784)
T ss_pred HHHHHHhh
Confidence 88887776
No 286
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.056 Score=54.69 Aligned_cols=69 Identities=29% Similarity=0.425 Sum_probs=42.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.|||-+|+.++++-. ..| |.+=.. +-++ +.+| .....+..+.+.-+..+-|+
T Consensus 214 vllygppgtgktl~aravanrtd--acf-----irvigs---elvq----kyvg------egarmvrelf~martkkaci 273 (435)
T KOG0729|consen 214 VLLYGPPGTGKTLCARAVANRTD--ACF-----IRVIGS---ELVQ----KYVG------EGARMVRELFEMARTKKACI 273 (435)
T ss_pred eEEeCCCCCchhHHHHHHhcccC--ceE-----EeehhH---HHHH----HHhh------hhHHHHHHHHHHhcccceEE
Confidence 67899999999999999998764 223 322111 1111 1111 12334455565555578899
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
|.||.++..
T Consensus 274 iffdeidai 282 (435)
T KOG0729|consen 274 IFFDEIDAI 282 (435)
T ss_pred EEeeccccc
Confidence 999998654
No 287
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.42 E-value=0.095 Score=55.52 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=56.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh--cccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH----
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR--NDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA---- 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~---- 67 (1314)
++|.|-+|+|||+|+.+++++.. .+..-+.++++-+++.. .+.++...+.+.=... ..++....+.
T Consensus 72 ~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~ 151 (276)
T cd01135 72 IPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPR 151 (276)
T ss_pred EEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHH
Confidence 68999999999999999988764 12234678888888754 5666666665542221 1112222221
Q ss_pred --HHHHHHHhc--CCeEEEEEeCCCCc
Q 042307 68 --RKLCERLRK--EKKILVILDNIWAN 90 (1314)
Q Consensus 68 --~~~~~~l~~--~~~~LlvlD~v~~~ 90 (1314)
..+-++++. ++++|+++||+...
T Consensus 152 ~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 152 MALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 234445543 69999999997544
No 288
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.11 Score=56.30 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.++|++|+|||-||+.++.+..
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhc
Confidence 67899999999999999999986
No 289
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.40 E-value=0.12 Score=65.83 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=71.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-----CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-----FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.++|++|+|||++|..++.+...... -..+++++++.-.. +.... ..-..++..+...+.+
T Consensus 202 ~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a------------g~~~~-g~~e~~lk~~~~~~~~ 268 (857)
T PRK10865 202 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA------------GAKYR-GEFEERLKGVLNDLAK 268 (857)
T ss_pred eEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh------------ccchh-hhhHHHHHHHHHHHHH
Confidence 568999999999999999998753211 12345554433110 00000 1112344455555432
Q ss_pred -CCeEEEEEeCCCCccc---------ccccCCCCCCC-CceEEEEeccccc------cccccCCCccEEecCCCHHHHHH
Q 042307 77 -EKKILVILDNIWANLD---------LENVGIPFGDR-GCGVLMTARSQDV------LSSKMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 77 -~~~~LlvlD~v~~~~~---------~~~~~~~~~~~-~~~ilvTtr~~~~------~~~~~~~~~~~~l~~l~~~ea~~ 139 (1314)
..++++++|++..... ...+..|.-.. .-++|-+|..... ......-...+.+...+.+++.+
T Consensus 269 ~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~ 348 (857)
T PRK10865 269 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIA 348 (857)
T ss_pred cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHH
Confidence 5789999999875521 12222332223 3455555554432 11111223457777779999999
Q ss_pred HHHHHh
Q 042307 140 LFKKLV 145 (1314)
Q Consensus 140 l~~~~~ 145 (1314)
+++...
T Consensus 349 iL~~l~ 354 (857)
T PRK10865 349 ILRGLK 354 (857)
T ss_pred HHHHHh
Confidence 886655
No 290
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.40 E-value=0.051 Score=56.16 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=29.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCC--------CEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLF--------DEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f--------~~~~wv~~~~~ 40 (1314)
++.|.|++|+||||++.+++........| ..|+|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 36789999999999999999887753222 35899987765
No 291
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.38 E-value=0.077 Score=59.42 Aligned_cols=55 Identities=33% Similarity=0.470 Sum_probs=39.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc----CCCEEEEEEeccCcCHHHHHHHHHHHhCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK----LFDEVVYADVSQTPDIKKIQGQIADKLGL 56 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 56 (1314)
++-|+|++|+|||++|.+++....... .-..++||+..+.++...+. ++++.++.
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 467999999999999999987653211 11469999998877765543 44555554
No 292
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.36 E-value=0.021 Score=54.96 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=28.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADV 37 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~ 37 (1314)
||.|+|.+|+||||||+++.++.... -..+++++.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LDg 38 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLDG 38 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEecC
Confidence 58899999999999999999999854 345777764
No 293
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.026 Score=56.34 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|.|.+|+||||+|+.++++..
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999965
No 294
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.34 E-value=0.016 Score=59.63 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=53.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
+|.|.|+.|+||||++..++...... ..+.++.--....-.......+..+-. .+.....-...+...++ ..+-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~~~~~i~q~~---vg~~~~~~~~~i~~aLr-~~pd 76 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHESKRSLINQRE---VGLDTLSFENALKAALR-QDPD 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccCccceeeecc---cCCCccCHHHHHHHHhc-CCcC
Confidence 47899999999999999988776532 233333221111100000001111100 01111122334555555 4566
Q ss_pred EEEEeCCCCcccccccCCCCCCCCceEEEEeccc
Q 042307 81 LVILDNIWANLDLENVGIPFGDRGCGVLMTARSQ 114 (1314)
Q Consensus 81 LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~ 114 (1314)
.+++|++.+.+.+.... .....|-.++.|+-..
T Consensus 77 ~ii~gEird~e~~~~~l-~~a~~G~~v~~t~Ha~ 109 (198)
T cd01131 77 VILVGEMRDLETIRLAL-TAAETGHLVMSTLHTN 109 (198)
T ss_pred EEEEcCCCCHHHHHHHH-HHHHcCCEEEEEecCC
Confidence 99999998776554431 1123454565555443
No 295
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.33 E-value=0.066 Score=58.93 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=46.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|..|+|||.||..+++....+ . ..+.|+++. .+...+....+.. ......+.+ .+-=|
T Consensus 159 l~L~G~~G~GKThLa~Aia~~l~~~-g-~~v~~~~~~------~l~~~lk~~~~~~--------~~~~~l~~l--~~~dl 220 (306)
T PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKK-G-VSSTLLHFP------EFIRELKNSISDG--------SVKEKIDAV--KEAPV 220 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEHH------HHHHHHHHHHhcC--------cHHHHHHHh--cCCCE
Confidence 6799999999999999999998733 2 236777643 3444444443211 122334444 46678
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
|||||+...
T Consensus 221 LiIDDiG~e 229 (306)
T PRK08939 221 LMLDDIGAE 229 (306)
T ss_pred EEEecCCCc
Confidence 999998644
No 296
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.0012 Score=67.14 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=51.2
Q ss_pred CCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc---cccCCCCCCCEE
Q 042307 352 CPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV---AVIGELKQLEIL 428 (1314)
Q Consensus 352 ~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~---~~~~~L~~L~~L 428 (1314)
+.+.+.|++.|+.+. .| ++..+|+.|++|.||-|.|++| ..+..+++|+.|.|+.|.|.++ ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445666777766532 22 3457788888888888888776 3366777777777777776654 445556666666
Q ss_pred EccCcc
Q 042307 429 SFQGSN 434 (1314)
Q Consensus 429 ~L~~~~ 434 (1314)
-|..|.
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 666553
No 297
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.31 E-value=0.014 Score=55.63 Aligned_cols=22 Identities=50% Similarity=0.798 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|.|.+|+||||+|+++....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 298
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.27 E-value=0.055 Score=68.58 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=46.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
++.++|+.|+|||.+|+.+++..... ....+-+++++..... .+.+-+|....-. .......+.+.+++....
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~----~~~~l~g~~~gyv-g~~~~g~L~~~v~~~p~s 670 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH----TVSRLKGSPPGYV-GYGEGGVLTEAVRRKPYS 670 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----hhccccCCCCCcc-cccccchHHHHHHhCCCc
Confidence 36789999999999999998886422 2233444444322111 1111122221111 111112344555657788
Q ss_pred EEEEeCCCCc
Q 042307 81 LVILDNIWAN 90 (1314)
Q Consensus 81 LlvlD~v~~~ 90 (1314)
+++||+++..
T Consensus 671 vvllDEieka 680 (852)
T TIGR03345 671 VVLLDEVEKA 680 (852)
T ss_pred EEEEechhhc
Confidence 9999999765
No 299
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.27 E-value=0.06 Score=59.91 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=40.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc----cCCCEEEEEEeccCcCHHHHHHHHHHHhCCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND----KLFDEVVYADVSQTPDIKKIQGQIADKLGLK 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 57 (1314)
++-|.|.+|+|||++|..++...... ..-..++||+....+....+ .++++.++..
T Consensus 125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 35689999999999999888543311 11236999999988877664 4567777654
No 300
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.27 E-value=0.094 Score=67.12 Aligned_cols=82 Identities=26% Similarity=0.283 Sum_probs=47.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.+.|+.|+|||++|+.++...... -..++.++++.-..-.. +.+-+|.. ++--..+....+...++.....+
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~----~~~l~g~~-~g~~g~~~~g~l~~~v~~~p~~v 670 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS----VARLIGAP-PGYVGYEEGGQLTEAVRRKPYSV 670 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch----HHHhcCCC-CCccCcccccHHHHHHHcCCCcE
Confidence 5689999999999999999886532 23456666665322111 11112221 11111111223444454455679
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
++||+++..
T Consensus 671 lllDeieka 679 (852)
T TIGR03346 671 VLFDEVEKA 679 (852)
T ss_pred EEEeccccC
Confidence 999999876
No 301
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.25 E-value=0.36 Score=53.42 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=34.0
Q ss_pred cEEecCCCHHHHHHHHHHHhCCCCCC--ccHHHHHHHHHHHhCCcHHHH
Q 042307 126 NFLVGALNESEAWDLFKKLVGDKIEN--NDLKAVAVDIAKACGGLPIAI 172 (1314)
Q Consensus 126 ~~~l~~l~~~ea~~l~~~~~~~~~~~--~~~~~~~~~i~~~~~g~Plai 172 (1314)
.+++++++.+|+..++.......... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998887322211 334555667777779999764
No 302
>PRK08233 hypothetical protein; Provisional
Probab=95.24 E-value=0.049 Score=55.64 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|.+|+||||+|..++....
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999998875
No 303
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.24 E-value=0.077 Score=52.55 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=46.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcC-Ce
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKE-KK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~ 79 (1314)
++.|.|.+|+|||++|.+++... ...++|+.-.+..+.. +.+.|.+.-.....+-...+....+.+.+.+. +.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 57899999999999999998762 2357788777666543 33333322211111111222223344444321 33
Q ss_pred EEEEEeCC
Q 042307 80 ILVILDNI 87 (1314)
Q Consensus 80 ~LlvlD~v 87 (1314)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47899985
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.22 E-value=0.095 Score=55.88 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=32.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQ 49 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 49 (1314)
++.|.|.+|+|||++|.+++.....+ -..++|+...+. ..++.+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCC--HHHHHHH
Confidence 47899999999999999988775422 345889987653 4444443
No 305
>PRK14974 cell division protein FtsY; Provisional
Probab=95.19 E-value=0.081 Score=58.64 Aligned_cols=88 Identities=22% Similarity=0.257 Sum_probs=49.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-cCHHHHHHHHHHHhCCCcccc----ChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-PDIKKIQGQIADKLGLKFYEE----SESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~ 75 (1314)
+|+++|+.|+||||++.+++...... .+ .++.+..... ....+-++..++.++...... +....+....+...
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 58899999999999999999877643 22 4555553321 122334455677777654221 11121222222222
Q ss_pred cCCeEEEEEeCCCCc
Q 042307 76 KEKKILVILDNIWAN 90 (1314)
Q Consensus 76 ~~~~~LlvlD~v~~~ 90 (1314)
....-++++|-+...
T Consensus 220 ~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 220 ARGIDVVLIDTAGRM 234 (336)
T ss_pred hCCCCEEEEECCCcc
Confidence 233348899987543
No 306
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.18 E-value=0.046 Score=51.97 Aligned_cols=107 Identities=21% Similarity=0.409 Sum_probs=67.7
Q ss_pred ccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccch-hhc
Q 042307 368 KIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIG 443 (1314)
Q Consensus 368 ~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~ 443 (1314)
.++..+|.++.+|+.+.+.. .+..++ ..|.++++|+.+.+..+ +..+ ..|.++..|+.+.+.. .+..++. .+.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 35667789999999999985 577774 45888889999999875 6555 5688888899999976 5555544 456
Q ss_pred CCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCC
Q 042307 444 QLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGD 480 (1314)
Q Consensus 444 ~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~ 480 (1314)
.+++|+.+++.. .+..++...+.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 789999999876 3677777778887 888888765
No 307
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.048 Score=56.98 Aligned_cols=97 Identities=24% Similarity=0.276 Sum_probs=55.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
++|||++|.|||-+|+.++....+. | +. +..+. +.+ . ........++...+...+..+|.
T Consensus 169 ~ll~GppGtGKTlla~~Vaa~mg~n--f--l~-v~ss~----------lv~----k-yiGEsaRlIRemf~yA~~~~pci 228 (388)
T KOG0651|consen 169 LLLYGPPGTGKTLLARAVAATMGVN--F--LK-VVSSA----------LVD----K-YIGESARLIRDMFRYAREVIPCI 228 (388)
T ss_pred eEEeCCCCCchhHHHHHHHHhcCCc--e--EE-eeHhh----------hhh----h-hcccHHHHHHHHHHHHhhhCceE
Confidence 6899999999999999999887643 3 11 11111 110 0 01112233444455555556799
Q ss_pred EEEeCCCCccc--------------------ccccCCCCCCCCceEEEEeccccccc
Q 042307 82 VILDNIWANLD--------------------LENVGIPFGDRGCGVLMTARSQDVLS 118 (1314)
Q Consensus 82 lvlD~v~~~~~--------------------~~~~~~~~~~~~~~ilvTtr~~~~~~ 118 (1314)
+.+|+++.... ++++.---.....++|+||.+.....
T Consensus 229 ifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 229 IFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred EeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 99999875510 11110000114678999998877554
No 308
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.18 E-value=0.039 Score=63.52 Aligned_cols=84 Identities=25% Similarity=0.387 Sum_probs=49.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-cCHHHHHHHHHHHhCCCccccC---h-hHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-PDIKKIQGQIADKLGLKFYEES---E-SGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~---~-~~~~~~~~~~l~ 75 (1314)
+|.++|.+|+||||+|..++.....+.+ .+..|++... ....+.+..+++.++....... + ...+....++..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~--kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~ 174 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGL--KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK 174 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCC--eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh
Confidence 4789999999999999999988874422 4555655432 1234445566777766543321 1 122223333332
Q ss_pred cCCeEEEEEeCCC
Q 042307 76 KEKKILVILDNIW 88 (1314)
Q Consensus 76 ~~~~~LlvlD~v~ 88 (1314)
. .-++|+|-..
T Consensus 175 -~-~DvVIIDTAG 185 (437)
T PRK00771 175 -K-ADVIIVDTAG 185 (437)
T ss_pred -c-CCEEEEECCC
Confidence 2 2567778763
No 309
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.15 E-value=0.052 Score=62.92 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=88.8
Q ss_pred EEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHH-----hCCCccccChhHHHHHHHHHHh---
Q 042307 4 VYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADK-----LGLKFYEESESGRARKLCERLR--- 75 (1314)
Q Consensus 4 i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-----l~~~~~~~~~~~~~~~~~~~l~--- 75 (1314)
..|+-|+||||+|+-++...--.+.-++ -++.+ -...+.|... +-++.......+.++.+.+...
T Consensus 43 fsG~RGvGKTt~Ari~AkalNC~~~~~~---ePC~~----C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P 115 (515)
T COG2812 43 FSGPRGVGKTTIARILAKALNCENGPTA---EPCGK----CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP 115 (515)
T ss_pred hcCCCCcCchhHHHHHHHHhcCCCCCCC---Ccchh----hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC
Confidence 5799999999999999987653221100 01111 1111222222 1111112233445555555554
Q ss_pred -cCCeEEEEEeCCCCc--ccccccCCCCC--CCCce-EEEEeccccccccccCCCccEEecCCCHHHHHHHHHHHhCCCC
Q 042307 76 -KEKKILVILDNIWAN--LDLENVGIPFG--DRGCG-VLMTARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKI 149 (1314)
Q Consensus 76 -~~~~~LlvlD~v~~~--~~~~~~~~~~~--~~~~~-ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 149 (1314)
+++.-.+|+|+|.-. ..|..+..... -.+.+ |+.||-...+....+.....|.++.++.++-...+...+....
T Consensus 116 ~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 116 SEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred ccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC
Confidence 356778999998644 34444422211 22344 4455555555543455577899999999999999988885433
Q ss_pred CCccHHHHHHHHHHHhCCcH
Q 042307 150 ENNDLKAVAVDIAKACGGLP 169 (1314)
Q Consensus 150 ~~~~~~~~~~~i~~~~~g~P 169 (1314)
... .++....|+++.+|..
T Consensus 196 I~~-e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 196 INI-EEDALSLIARAAEGSL 214 (515)
T ss_pred Ccc-CHHHHHHHHHHcCCCh
Confidence 322 3455667777777754
No 310
>PRK06217 hypothetical protein; Validated
Probab=95.12 E-value=0.074 Score=54.15 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=26.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC--CEEEEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF--DEVVYA 35 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f--~~~~wv 35 (1314)
|+|.|.+|+||||+|++++...... ++ |.++|.
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 8999999999999999999887532 22 446664
No 311
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.1 Score=59.34 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=67.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-------------------CCCEEEEEEeccCcC---HHHHHHHHHHHhCCCcc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-------------------LFDEVVYADVSQTPD---IKKIQGQIADKLGLKFY 59 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~ 59 (1314)
+.++|+.|+||||+|..+++..-... ....+..++.+.... ..+..+.+.+.......
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~ 106 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL 106 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC
Confidence 57899999999999999999876322 123466666666554 34445555555433321
Q ss_pred ccChhHHHHHHHHHHhcCCeEEEEEeCCCCccc--ccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCCC
Q 042307 60 EESESGRARKLCERLRKEKKILVILDNIWANLD--LENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~~~~LlvlD~v~~~~~--~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~ 133 (1314)
.++.-++|+|+++.... ...+. ..-+...+++|++|.... +...-......+++.+.+
T Consensus 107 ----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 107 ----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred ----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCch
Confidence 26788999999987621 11111 122345567777776433 322112234456665533
No 312
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.11 Score=59.30 Aligned_cols=85 Identities=19% Similarity=0.207 Sum_probs=48.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc-CcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ-TPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
+|+++|+.|+||||++..++.........+.+..+.... .....+-....++.++..................+ ...
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l--~~~ 270 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL--RGK 270 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh--cCC
Confidence 589999999999999999987653222223344444332 22333445566777776655444333333333333 234
Q ss_pred EEEEEeCC
Q 042307 80 ILVILDNI 87 (1314)
Q Consensus 80 ~LlvlD~v 87 (1314)
-++++|-.
T Consensus 271 d~VLIDTa 278 (420)
T PRK14721 271 HMVLIDTV 278 (420)
T ss_pred CEEEecCC
Confidence 45666754
No 313
>PRK04328 hypothetical protein; Provisional
Probab=95.09 E-value=0.084 Score=56.61 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=29.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
++.|.|.+|+|||++|.+++.....+ -..++|++..+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 46899999999999999988775322 345889987664
No 314
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.06 E-value=0.089 Score=61.02 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=49.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc-CcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ-TPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
||+++|+.|+||||++.+++.....++.-..|..|+... .....+-++..++.++..................+ ...
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L--~d~ 335 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL--RNK 335 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc--cCC
Confidence 689999999999999999998775332222466666543 22344445556677766543322222222222233 233
Q ss_pred EEEEEeCCC
Q 042307 80 ILVILDNIW 88 (1314)
Q Consensus 80 ~LlvlD~v~ 88 (1314)
..+++|-..
T Consensus 336 d~VLIDTaG 344 (484)
T PRK06995 336 HIVLIDTIG 344 (484)
T ss_pred CeEEeCCCC
Confidence 466777654
No 315
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.04 E-value=0.093 Score=56.76 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=49.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccc----cChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYE----ESESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~ 75 (1314)
+|+++|++|+||||++..++...... -..+.++++.... ...+-+...++..+..... .+.............
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999887643 2357777765321 1123334455665544211 111121112222222
Q ss_pred cCCeEEEEEeCCCC
Q 042307 76 KEKKILVILDNIWA 89 (1314)
Q Consensus 76 ~~~~~LlvlD~v~~ 89 (1314)
....-++|+|-...
T Consensus 152 ~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 152 ARNIDVVLIDTAGR 165 (272)
T ss_pred HCCCCEEEEeCCCC
Confidence 24556788897643
No 316
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.04 E-value=0.11 Score=56.82 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=50.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc------cChhHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE------ESESGRARKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l 74 (1314)
||-|.|+.|+||||||..++...... -..++||+.....+. ..++.+|++... ....+.++....-+
T Consensus 55 ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~li 127 (322)
T PF00154_consen 55 IVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQLI 127 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHHHH
T ss_pred eEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHHHh
Confidence 46799999999999999999876533 345899998776554 345566655321 22223333344344
Q ss_pred hcCCeEEEEEeCCCCc
Q 042307 75 RKEKKILVILDNIWAN 90 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~~ 90 (1314)
+.+..-++|+|.|...
T Consensus 128 rsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 128 RSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HTTSESEEEEE-CTT-
T ss_pred hcccccEEEEecCccc
Confidence 4456678999998655
No 317
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.045 Score=50.45 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=25.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
|.|+|.+|+||||+|.+++.... .-|+++++-
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~ 41 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDL 41 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhC-------CceEehhhH
Confidence 78999999999999999996654 337777654
No 318
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.075 Score=59.68 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=71.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.|||-||+.++-+..+. | |...+.+++ +++ - .-...+++.+...-++.-+|+
T Consensus 340 VLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd--Em~----V--------GvGArRVRdLF~aAk~~APcI 399 (752)
T KOG0734|consen 340 VLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD--EMF----V--------GVGARRVRDLFAAAKARAPCI 399 (752)
T ss_pred eEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh--hhh----h--------cccHHHHHHHHHHHHhcCCeE
Confidence 6799999999999999999877643 2 222222222 111 1 113456677777777788999
Q ss_pred EEEeCCCCcc----c---------ccccCCC---CCC-CCceEEEEecccccccc----ccCCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANL----D---------LENVGIP---FGD-RGCGVLMTARSQDVLSS----KMDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~----~---------~~~~~~~---~~~-~~~~ilvTtr~~~~~~~----~~~~~~~~~l~~l~~~ea~~l 140 (1314)
|.+|.++..- . +.++... +.. .|--||-.|..++.... ..+....+.++.-+..-..++
T Consensus 400 IFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eI 479 (752)
T KOG0734|consen 400 IFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEI 479 (752)
T ss_pred EEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHH
Confidence 9999987651 1 1222111 112 34333334554443221 123344566666677777777
Q ss_pred HHHHh
Q 042307 141 FKKLV 145 (1314)
Q Consensus 141 ~~~~~ 145 (1314)
+..+.
T Consensus 480 L~~yl 484 (752)
T KOG0734|consen 480 LKLYL 484 (752)
T ss_pred HHHHH
Confidence 77777
No 319
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.99 E-value=0.019 Score=59.19 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=23.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
||+|.|.+|+||||+|++++.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999999874
No 320
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.99 E-value=0.039 Score=55.53 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=37.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFY 59 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 59 (1314)
.|+|+|-||+||||+|..++.+...++-| .|.=|++..+.++ .++||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh-------HHhcCCCCC
Confidence 48999999999999999977766644433 4677887776654 445666654
No 321
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.99 E-value=0.099 Score=56.40 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=30.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP 41 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~ 41 (1314)
++.|.|.+|+|||++|.+++.....+ =..++|++.....
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCCc
Confidence 46899999999999999988775422 2358889987533
No 322
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.039 Score=54.90 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|-||-|+||||||+.++++..
T Consensus 6 ~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 6 VIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred EEEEecccccCHHHHHHHHHHHhC
Confidence 589999999999999999999987
No 323
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.93 E-value=0.081 Score=52.89 Aligned_cols=106 Identities=29% Similarity=0.369 Sum_probs=55.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc---c---CC--CEEEEEEeccCcCHHHHHHHHHHHhCCCcc--cc-----Ch-h
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND---K---LF--DEVVYADVSQTPDIKKIQGQIADKLGLKFY--EE-----SE-S 64 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~---~---~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~-----~~-~ 64 (1314)
+++|.|+.|+|||||.+.+..+...- . .+ ..+.|+. + .+.++.++.... .. +. .
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHHH
Confidence 47999999999999999886321110 0 00 0123321 1 456666665421 11 11 1
Q ss_pred HHHHHHHHHHhcCC--eEEEEEeCCCCccc------ccccCCCCCCCCceEEEEecccccc
Q 042307 65 GRARKLCERLRKEK--KILVILDNIWANLD------LENVGIPFGDRGCGVLMTARSQDVL 117 (1314)
Q Consensus 65 ~~~~~~~~~l~~~~--~~LlvlD~v~~~~~------~~~~~~~~~~~~~~ilvTtr~~~~~ 117 (1314)
...-.+.+.+. .+ +-++++|+-...-+ +.+........|..||++|.+....
T Consensus 93 ~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 93 LQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 22234555555 44 67888898654411 1111111122467888888887654
No 324
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.92 E-value=0.27 Score=62.77 Aligned_cols=82 Identities=23% Similarity=0.244 Sum_probs=45.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|+.|+|||++|+.++...... -...+.++++.-..-. .+.+-+|.. ++-........+....+....-+
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~~----~~~~LiG~~-pgy~g~~~~g~l~~~v~~~p~~v 673 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEKH----SVSRLVGAP-PGYVGYEEGGYLTEAVRRRPYSV 673 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhhh----hHHHHhCCC-CcccccchhHHHHHHHHhCCCCe
Confidence 6789999999999999999776422 2235566665422111 112222322 11111111222344444345579
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
++||+++..
T Consensus 674 LllDEieka 682 (857)
T PRK10865 674 ILLDEVEKA 682 (857)
T ss_pred EEEeehhhC
Confidence 999999855
No 325
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.88 E-value=0.058 Score=62.98 Aligned_cols=83 Identities=24% Similarity=0.318 Sum_probs=48.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc--ChhHHHHHHHHHHhcCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE--SESGRARKLCERLRKEK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~ 78 (1314)
++.|.|.+|+||||++.+++...... -..++|++..+. ..++ ...++.++...... ........+.+.+.+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi-~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQI-KLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHH-HHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 46799999999999999999887632 235889886543 3332 22255565432110 00112334444444445
Q ss_pred eEEEEEeCCC
Q 042307 79 KILVILDNIW 88 (1314)
Q Consensus 79 ~~LlvlD~v~ 88 (1314)
.-++|+|.+.
T Consensus 157 ~~lVVIDSIq 166 (446)
T PRK11823 157 PDLVVIDSIQ 166 (446)
T ss_pred CCEEEEechh
Confidence 5567777753
No 326
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.4 Score=52.41 Aligned_cols=150 Identities=13% Similarity=0.035 Sum_probs=83.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHh--------hcccCCCEEEEEEe-ccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA--------RNDKLFDEVVYADV-SQTPDIKKIQGQIADKLGLKFYEESESGRARKLCE 72 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 72 (1314)
..++|..|+||+++|..+++.. ....+.+.+.+++. +....+.++ +++.+.+.....
T Consensus 21 YLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~~------------- 86 (299)
T PRK07132 21 FLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSSF------------- 86 (299)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCCc-------------
Confidence 3589999999999999999886 22223333444432 122233222 233333322210
Q ss_pred HHhcCCeEEEEEeCCCCccc--ccccC--CCCCCCCceEEE-EeccccccccccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 73 RLRKEKKILVILDNIWANLD--LENVG--IPFGDRGCGVLM-TARSQDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 73 ~l~~~~~~LlvlD~v~~~~~--~~~~~--~~~~~~~~~ilv-Ttr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
..+.+-++|+|+++.... ...+. +.-+..++.+|+ |++...+.+........+++.+++.++..+.+... +
T Consensus 87 --~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~- 162 (299)
T PRK07132 87 --VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N- 162 (299)
T ss_pred --ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C-
Confidence 014778899999876632 11111 111234555555 44444444322334678999999999998887764 2
Q ss_pred CCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
. .++.+..++...+|.-.|+..
T Consensus 163 -~----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 163 -K----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -C----ChhHHHHHHHHcCCHHHHHHH
Confidence 1 123466667767763345554
No 327
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.86 E-value=0.094 Score=59.77 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=27.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS 38 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~ 38 (1314)
||.++|+.|+||||+|.+++...+.++ + .|..|++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~D 137 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCAD 137 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcCc
Confidence 589999999999999999998876432 2 46666553
No 328
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.82 E-value=0.1 Score=64.76 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=45.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|++|+|||++|+.++.... . ..+.+++++..... .+.+-+|... +-........+.+.+.+....+
T Consensus 491 ~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~----~~~~LiG~~~-gyvg~~~~g~L~~~v~~~p~sV 560 (758)
T PRK11034 491 FLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERH----TVSRLIGAPP-GYVGFDQGGLLTDAVIKHPHAV 560 (758)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhcccc----cHHHHcCCCC-CcccccccchHHHHHHhCCCcE
Confidence 57899999999999999988874 1 24455655432211 1222233221 1101111123444455466789
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
++||+++..
T Consensus 561 lllDEieka 569 (758)
T PRK11034 561 LLLDEIEKA 569 (758)
T ss_pred EEeccHhhh
Confidence 999999876
No 329
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.82 E-value=0.13 Score=52.60 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=39.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE-------eccCcCHHHH--HHHHHHHhCCCccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD-------VSQTPDIKKI--QGQIADKLGLKFYE 60 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~-------~~~~~~~~~~--~~~i~~~l~~~~~~ 60 (1314)
|.++||+|+||||..++++.....++....++=++ ..-..++++. ++.+.++.+....+
T Consensus 22 ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 22 ILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred EEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 67899999999999999998887654433343222 1123355553 67788887665444
No 330
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.82 E-value=0.08 Score=61.87 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=48.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc--ChhHHHHHHHHHHhcCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE--SESGRARKLCERLRKEK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~ 78 (1314)
++.|.|.+|+||||++.+++.....+. ..++|++..+. ..++ ..-++.++...... ........+...+.+.+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi-~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQI-KMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHH-HHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 478999999999999999988765331 35889886543 3332 22244554432110 00112344444444445
Q ss_pred eEEEEEeCCC
Q 042307 79 KILVILDNIW 88 (1314)
Q Consensus 79 ~~LlvlD~v~ 88 (1314)
.-++|+|.+.
T Consensus 171 ~~~vVIDSIq 180 (454)
T TIGR00416 171 PQACVIDSIQ 180 (454)
T ss_pred CcEEEEecch
Confidence 5677777754
No 331
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.011 Score=35.48 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=14.8
Q ss_pred cccEEEecCCcCCCCCccccc
Q 042307 379 ELRVLDFTDMHLLSLPSSLHL 399 (1314)
Q Consensus 379 ~L~~L~Ls~n~~~~lp~~~~~ 399 (1314)
+|++||+++|.++.+|+.|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766654
No 332
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.77 E-value=0.087 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|.|++|+||||+|+.+++...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998865
No 333
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.11 Score=63.40 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=54.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-cCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-PDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
||+++|+.|+||||.+.+++......+....|..+..... ....+-++...+.++.......+...+....+.+. ..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~--~~ 264 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG--DK 264 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc--CC
Confidence 5899999999999999999987742222234666665432 12345566677777776544434444444444443 33
Q ss_pred EEEEEeCCC
Q 042307 80 ILVILDNIW 88 (1314)
Q Consensus 80 ~LlvlD~v~ 88 (1314)
-++++|=..
T Consensus 265 D~VLIDTAG 273 (767)
T PRK14723 265 HLVLIDTVG 273 (767)
T ss_pred CEEEEeCCC
Confidence 477888765
No 334
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.69 E-value=0.14 Score=59.04 Aligned_cols=88 Identities=25% Similarity=0.413 Sum_probs=56.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|.+|+|||||+.++++..... +-+.++++-+++.. .+.++...+...-... ..+.+...+ .
T Consensus 146 ~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a 224 (461)
T PRK12597 146 TGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTG 224 (461)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHH
Confidence 6899999999999999999887643 55777788776643 4555555554432211 111122222 1
Q ss_pred HHHHHHHhc--CCeEEEEEeCCCCc
Q 042307 68 RKLCERLRK--EKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~~--~~~~LlvlD~v~~~ 90 (1314)
..+-++++. ++++|+++|++...
T Consensus 225 ~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 225 LTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHhcCCceEEEeccchHH
Confidence 234445542 79999999998543
No 335
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.66 E-value=0.086 Score=51.18 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCeEEEEEeC----CCCcccccccC--CCCCCCCceEEEEeccccccc
Q 042307 66 RARKLCERLRKEKKILVILDN----IWANLDLENVG--IPFGDRGCGVLMTARSQDVLS 118 (1314)
Q Consensus 66 ~~~~~~~~l~~~~~~LlvlD~----v~~~~~~~~~~--~~~~~~~~~ilvTtr~~~~~~ 118 (1314)
+...+-+.+. +++-+++-|. +|..-.|+-+. ......|..|+++|-+..+..
T Consensus 144 QRvaIARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 144 QRVAIARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 3345666666 7777888885 44433343321 123567999999999988766
No 336
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.64 E-value=0.15 Score=54.50 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=49.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc--------------------
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-------------------- 60 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------------- 60 (1314)
++.|.|.+|+|||++|.+++.....+ =..++|+...+. ..++.+.+ ++++....+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccccC
Confidence 47899999999999999997665322 246899998654 34444442 334322111
Q ss_pred -cChhHHHHHHHHHHhcCCeEEEEEeCCC
Q 042307 61 -ESESGRARKLCERLRKEKKILVILDNIW 88 (1314)
Q Consensus 61 -~~~~~~~~~~~~~l~~~~~~LlvlD~v~ 88 (1314)
.........+...+.+.+.-++|+|.+.
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112233444444443466688999865
No 337
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.60 E-value=0.026 Score=51.32 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
|.|+|.+|+|||++|..++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999988774
No 338
>PTZ00301 uridine kinase; Provisional
Probab=94.60 E-value=0.025 Score=58.26 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|.+|+||||+|+.+.....
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 589999999999999999988764
No 339
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.59 E-value=0.025 Score=55.02 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
||.+.|++|+||||+|++++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 689999999999999999987654
No 340
>PRK10867 signal recognition particle protein; Provisional
Probab=94.59 E-value=0.14 Score=58.91 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=34.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 57 (1314)
||.++|++|+||||.|.+++.....+.. ..+..|++.... ...+-+...++..+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKK-KKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcC-CcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 5789999999999999999987764311 235556554321 1222333445555543
No 341
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.55 E-value=0.15 Score=54.62 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=35.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc----------CCCEEEEEEeccCc-CHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK----------LFDEVVYADVSQTP-DIKKIQGQIADKL 54 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~----------~f~~~~wv~~~~~~-~~~~~~~~i~~~l 54 (1314)
|..|+|++|+|||+||.+++....... .-..|++++..... .+.+-...+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 357899999999999999987654321 12347788876644 3444445555544
No 342
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.50 E-value=0.024 Score=57.75 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=92.9
Q ss_pred cCCCccEEEcccCCCcccC-----CCc-CCCCccEEEeCCCC---CCcccCch------hhhCCCcccEEEecCCcCC-C
Q 042307 329 TLKNCTAISLHNCKIGELV-----DGL-ECPRLKFFHISPRE---GFIKIPDN------FFTRLTELRVLDFTDMHLL-S 392 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~-----~~~-~~~~L~~L~l~~~~---~~~~~~~~------~f~~l~~L~~L~Ls~n~~~-~ 392 (1314)
.+..+..+++++|.|+.-. ..+ +-.+|+..+++.-. ...+++.+ ++-++++|+..+||.|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3566778888888875322 112 45667776665422 11122222 2457888888888888876 3
Q ss_pred CC----cccccCccCcEEEcCCCcCCCc--cc-------------cCCCCCCCEEEccCccCcccchhh-----cCCCCC
Q 042307 393 LP----SSLHLLVNLRTLCLDNGVLGDV--AV-------------IGELKQLEILSFQGSNIEQLPREI-----GQLTRL 448 (1314)
Q Consensus 393 lp----~~~~~l~~L~~L~L~~~~~~~~--~~-------------~~~L~~L~~L~L~~~~i~~lp~~i-----~~L~~L 448 (1314)
.| +.+++-+.|.+|.+++|.+..+ .- ..+-+.|++.+...|++...|... ..=.+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 33 3466778888888888876544 11 234567888888888777655432 222467
Q ss_pred CEEeeccCCCCCcc--ch---hhhcCCCCCcEEEcCCCccc
Q 042307 449 RSLNLSSCYQLKAI--SS---NVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 449 ~~L~L~~~~~l~~~--~~---~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+.+.+..| .++.- .. -.+..+++|+.|++.+|.++
T Consensus 188 k~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 188 KEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred eeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 77777775 33211 00 01345577777887777664
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.02 Score=55.93 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=22.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND 26 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~ 26 (1314)
.|.++|.+|+||||+|++++...+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 36789999999999999999998754
No 344
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.21 Score=53.44 Aligned_cols=86 Identities=21% Similarity=0.309 Sum_probs=52.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHH-hCCC-ccccChhHHHHHHHHHHhc---
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADK-LGLK-FYEESESGRARKLCERLRK--- 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~~~~~l~~--- 76 (1314)
+=|+|+.|+||||+|.+++-..... -..++||+.....+..... +++.. +..- .......+....+...+..
T Consensus 63 tEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~ 139 (279)
T COG0468 63 TEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGA 139 (279)
T ss_pred EEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHHHhcc
Confidence 4589999999999999987665532 3479999999888776643 33333 2111 1111222333333333331
Q ss_pred CCeEEEEEeCCCCc
Q 042307 77 EKKILVILDNIWAN 90 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~ 90 (1314)
.+--|+|+|.|...
T Consensus 140 ~~i~LvVVDSvaa~ 153 (279)
T COG0468 140 EKIDLLVVDSVAAL 153 (279)
T ss_pred CCCCEEEEecCccc
Confidence 23678999987544
No 345
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.44 E-value=0.12 Score=53.83 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=65.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc-----CcCHHHHHHHHHHHhCCCc------c-ccChhHHH-
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ-----TPDIKKIQGQIADKLGLKF------Y-EESESGRA- 67 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~-~~~~~~~~- 67 (1314)
+++|+|.+|.||||+++.+..-.+.. .+.+++.-.+ .....+...++++.++... + +-+...+.
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 47999999999999999998776532 3344443222 1223344556666666442 1 11222222
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCcccc------cccCCC-CCCCCceEEEEeccccccc
Q 042307 68 RKLCERLRKEKKILVILDNIWANLDL------ENVGIP-FGDRGCGVLMTARSQDVLS 118 (1314)
Q Consensus 68 ~~~~~~l~~~~~~LlvlD~v~~~~~~------~~~~~~-~~~~~~~ilvTtr~~~~~~ 118 (1314)
..+-+.+. -++-++|.|.-.+.-+. -.+... ....|...+..|-+-.++.
T Consensus 118 i~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 118 IGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred HHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence 23444444 78899999986544221 111000 1124667788887776665
No 346
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.42 E-value=0.029 Score=51.23 Aligned_cols=29 Identities=38% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEV 32 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~ 32 (1314)
|.|+|.+|+||||+|+.++..... .|.++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~--~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL--SFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCC--ceeEE
Confidence 789999999999999999998763 36543
No 347
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.41 E-value=0.15 Score=60.66 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=51.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc----------------cChh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE----------------ESES 64 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------~~~~ 64 (1314)
++.|.|++|+||||++.+++.....+ =..++|+...+. ..++... ++.++....+ ....
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~-~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRN-AYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHH-HHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 47899999999999999999887533 245788876554 3443333 3555543211 1113
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCC
Q 042307 65 GRARKLCERLRKEKKILVILDNIW 88 (1314)
Q Consensus 65 ~~~~~~~~~l~~~~~~LlvlD~v~ 88 (1314)
+.+..+.+.+.+.+.-.+|+|.+.
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHH
Confidence 344555555554455567777754
No 348
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.41 Score=48.54 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=76.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|.|||-+|+..+.+-... | +.+..+ ++.+-+ + .+....+..-..--.+..+.+
T Consensus 208 vLmYGPPGTGKTlmARAcAaqT~aT--F-----LKLAgP--------QLVQMf-I----GdGAkLVRDAFaLAKEkaP~I 267 (424)
T KOG0652|consen 208 VLMYGPPGTGKTLMARACAAQTNAT--F-----LKLAGP--------QLVQMF-I----GDGAKLVRDAFALAKEKAPTI 267 (424)
T ss_pred eEeeCCCCCcHHHHHHHHHHhccch--H-----HHhcch--------HHHhhh-h----cchHHHHHHHHHHhhccCCeE
Confidence 5789999999999999988775422 2 111111 111111 0 011122222222222357899
Q ss_pred EEEeCCCCcc--------------------cccccCCCCCCCCceEEEEeccccccccc----cCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL--------------------DLENVGIPFGDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~--------------------~~~~~~~~~~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea 137 (1314)
|.+|.++... -+.++.--.+....|||..|...++...+ .+-...++.+--+++..
T Consensus 268 IFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aR 347 (424)
T KOG0652|consen 268 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEAR 347 (424)
T ss_pred EEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHH
Confidence 9999876440 11222111123467888888877765431 12234455544444433
Q ss_pred HHHHHHHh--CCCCCCccHHHHHHHHHHHhCCc-HHHHHHHHHHHh
Q 042307 138 WDLFKKLV--GDKIENNDLKAVAVDIAKACGGL-PIAIVTIARALR 180 (1314)
Q Consensus 138 ~~l~~~~~--~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~~l~ 180 (1314)
..++.-+. ....++..+++.|+.- ....|- -.|+.+=|++++
T Consensus 348 arIlQIHsRKMnv~~DvNfeELaRsT-ddFNGAQcKAVcVEAGMiA 392 (424)
T KOG0652|consen 348 ARILQIHSRKMNVSDDVNFEELARST-DDFNGAQCKAVCVEAGMIA 392 (424)
T ss_pred HHHHHHhhhhcCCCCCCCHHHHhhcc-cccCchhheeeehhhhHHH
Confidence 44444333 2333445555444321 112222 234555556553
No 349
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.33 E-value=0.14 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=22.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
||.|.|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999875
No 350
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.32 E-value=0.15 Score=58.04 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=50.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH------
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA------ 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~------ 67 (1314)
++|.|..|+|||||++.++.... .+.++..-+++.. .+.++.+.++..-+.. ..+.+...+.
T Consensus 165 igI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A 240 (444)
T PRK08972 165 MGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETA 240 (444)
T ss_pred EEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHH
Confidence 68999999999999999986443 3555556666543 3444555543332211 1111222221
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 68 RKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+++||+...
T Consensus 241 ~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 241 TTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHcCCCEEEEEcChHHH
Confidence 23444443 489999999997544
No 351
>PRK03839 putative kinase; Provisional
Probab=94.30 E-value=0.041 Score=55.94 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999875
No 352
>PRK00625 shikimate kinase; Provisional
Probab=94.28 E-value=0.045 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|+||+|+||||+++.++++..
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998875
No 353
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.26 E-value=0.19 Score=52.83 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
||+|.|.+|+||||+|+.+....+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6999999999999999999988764
No 354
>PRK14529 adenylate kinase; Provisional
Probab=94.25 E-value=0.15 Score=52.85 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=46.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCC-E-EEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFD-E-VVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~-~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
|.|.|++|+||||+|+.++...... +.. + ++.-.+..........+.++++- .-.++.-....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G----~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRG----DLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhcc----CcchHHHHHHHHHHHHhccCC
Confidence 7899999999999999999888632 111 1 11111222222333333333321 112233344556666654335
Q ss_pred EEEEEeCCCCc
Q 042307 80 ILVILDNIWAN 90 (1314)
Q Consensus 80 ~LlvlD~v~~~ 90 (1314)
.=+|||+.-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 56999997544
No 355
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.25 E-value=0.22 Score=57.06 Aligned_cols=88 Identities=22% Similarity=0.406 Sum_probs=56.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|.+|+|||+|+.+++..... .+-+.++|+-+++.. .+.++.+.+...=... ..+.+...+ .
T Consensus 141 ~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a 219 (449)
T TIGR03305 141 AGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTA 219 (449)
T ss_pred EEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999888652 234678888887654 4555666555432211 111222222 2
Q ss_pred HHHHHHHhc--CCeEEEEEeCCCCc
Q 042307 68 RKLCERLRK--EKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~~--~~~~LlvlD~v~~~ 90 (1314)
..+-++++. ++++|+++||+...
T Consensus 220 ~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 220 LTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHhcCCceEEEecChHHH
Confidence 234555553 79999999998554
No 356
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.22 E-value=0.26 Score=54.78 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=75.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc---------------------cCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND---------------------KLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE 60 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~---------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 60 (1314)
+.++|+.|+||||+|..++...--. .|.| ++++.-..... .-+ ....
T Consensus 24 ~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~----------~~g-~~~~ 91 (325)
T PRK08699 24 WLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEP----------ENG-RKLL 91 (325)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEecccccc----------ccc-ccCC
Confidence 4689999999999999999885421 1122 22222110000 000 0000
Q ss_pred cChhHHHHHHHHHHhc----CCeEEEEEeCCCCccc------ccccCCCCCCCCceEEEEecccc-ccccccCCCccEEe
Q 042307 61 ESESGRARKLCERLRK----EKKILVILDNIWANLD------LENVGIPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLV 129 (1314)
Q Consensus 61 ~~~~~~~~~~~~~l~~----~~~~LlvlD~v~~~~~------~~~~~~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l 129 (1314)
.-..+.++.+.+.+.. +++-++|+|+++..+. +..+..| ..++.+|++|.+.. +..........+.+
T Consensus 92 ~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep--~~~~~~Ilvth~~~~ll~ti~SRc~~~~~ 169 (325)
T PRK08699 92 QIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP--PPQVVFLLVSHAADKVLPTIKSRCRKMVL 169 (325)
T ss_pred CcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC--cCCCEEEEEeCChHhChHHHHHHhhhhcC
Confidence 0123344444444441 3445556688776521 1112122 23456666666644 43322334567889
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 130 GALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 130 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
.+++.+++.+.+.+. |. . . .. + . +..++|.|+.
T Consensus 170 ~~~~~~~~~~~L~~~-~~--~-~--~~-~-~-l~~~~g~p~~ 202 (325)
T PRK08699 170 PAPSHEEALAYLRER-GV--A-E--PE-E-R-LAFHSGAPLF 202 (325)
T ss_pred CCCCHHHHHHHHHhc-CC--C-c--HH-H-H-HHHhCCChhh
Confidence 999999999888764 21 1 1 11 1 2 3457898854
No 357
>PRK14532 adenylate kinase; Provisional
Probab=94.19 E-value=0.15 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|.|++|+||||+|+.++....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999987653
No 358
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.18 E-value=0.089 Score=55.86 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=28.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP 41 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~ 41 (1314)
++.|.|.+|+|||++|.+++.....+ .=..++|+...+..
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP 60 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH
Confidence 47899999999999999988765422 01348899876653
No 359
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.38 Score=49.80 Aligned_cols=69 Identities=33% Similarity=0.371 Sum_probs=43.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|.+|.|||-||+.++++-... |=+++ --.-|.+++|. ....++.+.+......+.+
T Consensus 222 VIlyG~PGTGKTLLAKAVANqTSAT--FlRvv------------GseLiQkylGd------GpklvRqlF~vA~e~apSI 281 (440)
T KOG0726|consen 222 VILYGEPGTGKTLLAKAVANQTSAT--FLRVV------------GSELIQKYLGD------GPKLVRELFRVAEEHAPSI 281 (440)
T ss_pred eEEeCCCCCchhHHHHHHhcccchh--hhhhh------------hHHHHHHHhcc------chHHHHHHHHHHHhcCCce
Confidence 6789999999999999999886532 42222 01123334432 2344555665555567788
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
+++|.++..
T Consensus 282 vFiDEIdAi 290 (440)
T KOG0726|consen 282 VFIDEIDAI 290 (440)
T ss_pred EEeehhhhh
Confidence 888887644
No 360
>PRK05973 replicative DNA helicase; Provisional
Probab=94.16 E-value=0.22 Score=52.04 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=29.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
++.|.|.+|+|||++|.+++.....+ =..++|++....
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes 103 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT 103 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC
Confidence 47899999999999999998876533 235788877664
No 361
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.12 E-value=0.052 Score=56.18 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=30.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPD 42 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~ 42 (1314)
+|+|+|++|+|||||+-++...+..+.+--+|+=|+-+.+++
T Consensus 31 ~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 31 VIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred EEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 589999999999999999999998765545566666665554
No 362
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.11 E-value=0.26 Score=56.36 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=50.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|..|+|||||++.++.... .+.++++-+++.. .+.+..+..+..-+.. ..+.+...+ .
T Consensus 161 i~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a 236 (442)
T PRK08927 161 MGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLT 236 (442)
T ss_pred EEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHH
Confidence 68999999999999999987765 3455556665543 3444444333322211 111112222 1
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 68 RKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+++||+...
T Consensus 237 ~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 237 LAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHCCCcEEEEEeCcHHH
Confidence 23444443 479999999998544
No 363
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.09 E-value=0.28 Score=56.40 Aligned_cols=88 Identities=25% Similarity=0.440 Sum_probs=55.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|.+|+|||||+.+++.....+. -+.++++-+++.. .+.++.+.+...=... ..+.+...+ .
T Consensus 147 ~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a 225 (463)
T PRK09280 147 IGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTG 225 (463)
T ss_pred EEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 68999999999999999988876432 2467778776644 4556666665432211 111122222 1
Q ss_pred HHHHHHHh--cCCeEEEEEeCCCCc
Q 042307 68 RKLCERLR--KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~--~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+++|++..-
T Consensus 226 ~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 226 LTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHhcCCceEEEecchHHH
Confidence 23444443 379999999997543
No 364
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.09 E-value=0.13 Score=55.30 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=23.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD 36 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~ 36 (1314)
.|.|.|.+|+||||+|+++....... .. .+.+++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~-~~-~v~~i~ 36 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEK-GK-EVVIIS 36 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHT-T---EEEE-
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CC-EEEEEc
Confidence 37899999999999999999988752 12 355554
No 365
>PRK06762 hypothetical protein; Provisional
Probab=94.08 E-value=0.038 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|.|.|++|+||||+|+.+++..
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 366
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.08 E-value=0.028 Score=60.68 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=43.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|+.|+|||++++.+........ | .+.-++++...+...+++.+...+.......-.. ..+++.+
T Consensus 36 vLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP----------~~~k~lv 103 (272)
T PF12775_consen 36 VLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP----------PGGKKLV 103 (272)
T ss_dssp EEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE----------ESSSEEE
T ss_pred EEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC----------CCCcEEE
Confidence 67999999999999999887654322 1 2445666666555544443322221110000000 1268889
Q ss_pred EEEeCCCC
Q 042307 82 VILDNIWA 89 (1314)
Q Consensus 82 lvlD~v~~ 89 (1314)
+.+||+.-
T Consensus 104 ~fiDDlN~ 111 (272)
T PF12775_consen 104 LFIDDLNM 111 (272)
T ss_dssp EEEETTT-
T ss_pred EEecccCC
Confidence 99999853
No 367
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.08 E-value=0.042 Score=55.23 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
||+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999886
No 368
>PRK05439 pantothenate kinase; Provisional
Probab=94.07 E-value=0.15 Score=55.58 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
||+|.|.+|+||||+|+.+.....
T Consensus 88 iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988664
No 369
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.06 E-value=0.17 Score=62.10 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=53.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc------cChhHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE------ESESGRARKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l 74 (1314)
++-|.|.+|+||||||.+++...... =..++||+..+..+. ..+++++..... .........+...+
T Consensus 62 iteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 62 VIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 35699999999999999877665422 245899998776663 367777765321 12222233333334
Q ss_pred hcCCeEEEEEeCCCC
Q 042307 75 RKEKKILVILDNIWA 89 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~ 89 (1314)
.++..-++|+|.+..
T Consensus 135 ~~~~~~LVVIDSI~a 149 (790)
T PRK09519 135 RSGALDIVVIDSVAA 149 (790)
T ss_pred hcCCCeEEEEcchhh
Confidence 445677899999753
No 370
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.03 E-value=0.14 Score=51.75 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD 36 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~ 36 (1314)
+|+|.|++|+||||+|+.++......+ ..+.+++
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g--~~v~~id 39 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAG--YPVEVLD 39 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEc
Confidence 589999999999999999999876332 1355564
No 371
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.03 E-value=0.12 Score=55.76 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|.+.|++|+||||+|++++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988763
No 372
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.01 E-value=0.31 Score=52.96 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=33.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
++.|.|.+|+|||++|.+++...... ...++||..++.
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~ 62 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES 62 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC
Confidence 57899999999999999999998744 667999998775
No 373
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.01 E-value=0.22 Score=57.32 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=46.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCcccc----ChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEE----SESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~ 75 (1314)
+|.++|.+|+||||.|..++.....+.. ..+..|++.... ...+.+...++..+...... +.........+...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~ 179 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK 179 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988642211 245556554322 12333344455555443221 11122223333333
Q ss_pred cCCeEEEEEeCCC
Q 042307 76 KEKKILVILDNIW 88 (1314)
Q Consensus 76 ~~~~~LlvlD~v~ 88 (1314)
....-++|+|-..
T Consensus 180 ~~~~DvVIIDTaG 192 (428)
T TIGR00959 180 ENGFDVVIVDTAG 192 (428)
T ss_pred hcCCCEEEEeCCC
Confidence 2333467777654
No 374
>PLN02200 adenylate kinase family protein
Probab=94.01 E-value=0.13 Score=54.39 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.|.|++|+||||+|+.++....
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 375
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.98 E-value=0.21 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|.|++|+||||+|+.++....
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987764
No 376
>PRK08149 ATP synthase SpaL; Validated
Probab=93.97 E-value=0.21 Score=57.07 Aligned_cols=85 Identities=18% Similarity=0.327 Sum_probs=51.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc-CcCHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ-TPDIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|.+|+|||||+..++.... .+.+++..+.. ..++.++.....+..... ..+.+...+ .
T Consensus 154 i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a 229 (428)
T PRK08149 154 MGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVA 229 (428)
T ss_pred EEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHH
Confidence 78999999999999999886543 33444444443 335666666666543322 111112221 1
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 68 RKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+++||+...
T Consensus 230 ~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 230 TTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHcCCCEEEEccchHHH
Confidence 23444443 479999999997544
No 377
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.96 E-value=0.058 Score=56.50 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=35.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPD 42 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~ 42 (1314)
||+|+|.+|+||||+.-.+......+.+--.|+=|+-+.+++
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC
Confidence 689999999999999999999998777766677777777664
No 378
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.93 E-value=0.14 Score=55.35 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|..|+||||+|+.+.....
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999988766554
No 379
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.91 E-value=0.13 Score=52.44 Aligned_cols=49 Identities=31% Similarity=0.516 Sum_probs=32.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHH-------HHHHHHHHHhCCCcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIK-------KIQGQIADKLGLKFY 59 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~-------~~~~~i~~~l~~~~~ 59 (1314)
+|+|+|+.|+||||+|+.+.. .. |. ++ ++.. -.+ ..+..+++.+|....
T Consensus 4 iIglTG~igsGKStva~~~~~-~G----~~-vi--daD~--v~r~~~~~~~~~~~~i~~~fG~~i~ 59 (201)
T COG0237 4 IIGLTGGIGSGKSTVAKILAE-LG----FP-VI--DADD--VAREVVEPGGEALQEIAERFGLEIL 59 (201)
T ss_pred EEEEecCCCCCHHHHHHHHHH-cC----Ce-EE--EccH--HHHHHHhccchHHHHHHHHcCCccc
Confidence 589999999999999999976 32 21 22 2221 122 345578888886653
No 380
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.90 E-value=0.043 Score=55.51 Aligned_cols=26 Identities=38% Similarity=0.601 Sum_probs=23.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND 26 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~ 26 (1314)
+|+|.|.+|+||||+|++++......
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 58999999999999999999998743
No 381
>PRK13768 GTPase; Provisional
Probab=93.89 E-value=0.17 Score=54.26 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=27.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
+|+|.|++|+||||++..++....... ..++.|+...
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEECCC
Confidence 478999999999999999998876432 2466666543
No 382
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.88 E-value=0.19 Score=58.17 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=49.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCE-EEEEEeccCc-CHHHHHHHHHHHh-CCCccccCh-----hHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDE-VVYADVSQTP-DIKKIQGQIADKL-GLKFYEESE-----SGRARKLCER 73 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l-~~~~~~~~~-----~~~~~~~~~~ 73 (1314)
+.|+|++|+|||||++.+++..... +-+. ++++-+.+.. .+.++.+.+-..+ ..+.+.... ......+-++
T Consensus 419 ~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~ 497 (672)
T PRK12678 419 GLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKR 497 (672)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999876532 2233 4455555533 3444444331111 111111111 1112234444
Q ss_pred Hh-cCCeEEEEEeCCCCc
Q 042307 74 LR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 74 l~-~~~~~LlvlD~v~~~ 90 (1314)
+. .++.+||++|++...
T Consensus 498 fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 498 LVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHcCCCEEEEEeCchHH
Confidence 44 479999999997543
No 383
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.88 E-value=0.24 Score=46.93 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|+|++|.||||+.+.++.-..
T Consensus 32 iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 32 IAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred EEEeCCCCccHHHHHHHHHhccC
Confidence 78999999999999999987644
No 384
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.86 E-value=0.042 Score=57.47 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|.+|+||||||+.++...
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 385
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.84 E-value=0.37 Score=47.63 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=57.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC------------------CEEEEEEeccC---cCHHHHHHHHHHHhCCCccc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF------------------DEVVYADVSQT---PDIKKIQGQIADKLGLKFYE 60 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f------------------~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~~~ 60 (1314)
+.++|+.|+||+++|..+++..-..... ..+.|+.-... ..+.++. .+.+.+.....
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~- 99 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSPS- 99 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS-T-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHHHh-
Confidence 5789999999999999999875543221 22444433322 1222222 33333322211
Q ss_pred cChhHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCC
Q 042307 61 ESESGRARKLCERLRKEKKILVILDNIWAN--LDLENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGAL 132 (1314)
Q Consensus 61 ~~~~~~~~~~~~~l~~~~~~LlvlD~v~~~--~~~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l 132 (1314)
.+++-++|+|+++.. +....+. +.-+..++++|++|++.. +.+.-..-...+.+.++
T Consensus 100 ---------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 100 ---------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp ---------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred ---------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 146778999999876 2222221 111245678777777655 33212223344555544
No 386
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.82 E-value=0.04 Score=54.77 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=31.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPD 42 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~ 42 (1314)
+.+.|+.|+|||.+|+.+++.... +.....+-++++.-..
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 678999999999999999998863 2245677788776444
No 387
>PRK06696 uridine kinase; Validated
Probab=93.81 E-value=0.044 Score=57.83 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|.+|+||||+|++++.....
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998863
No 388
>PRK14531 adenylate kinase; Provisional
Probab=93.80 E-value=0.19 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|.|++|+||||+|+.++....
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998864
No 389
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.80 E-value=0.37 Score=55.17 Aligned_cols=88 Identities=24% Similarity=0.433 Sum_probs=56.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|.+|+|||||+.+++.....+. -+.++++-+++.. .+.++++.+...=... ..+.+...+ .
T Consensus 146 ~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a 224 (461)
T TIGR01039 146 IGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTG 224 (461)
T ss_pred EEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 68999999999999999998766332 3467788776643 4566666665432211 111222222 2
Q ss_pred HHHHHHHhc--CCeEEEEEeCCCCc
Q 042307 68 RKLCERLRK--EKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~~--~~~~LlvlD~v~~~ 90 (1314)
..+-++++. ++++|+++|++...
T Consensus 225 ~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 225 LTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHhcCCeeEEEecchhHH
Confidence 235555543 68999999998654
No 390
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.79 E-value=0.13 Score=55.28 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=60.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCC-Cccc-------cChhHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGL-KFYE-------ESESGRARKLCER 73 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~-------~~~~~~~~~~~~~ 73 (1314)
++|.|+.|+||||+.+.++...... .+-++++-.+-.... ...+++..... .... -+.......+...
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d-~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~ 189 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVD-ERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMML 189 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecch-hHHHHHHHhcccccccccccccccccchHHHHHHHH
Confidence 6899999999999999999776532 334444322111111 11223222211 1000 0111122334444
Q ss_pred HhcCCeEEEEEeCCCCcccccccCCCCCCCCceEEEEeccccc
Q 042307 74 LRKEKKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDV 116 (1314)
Q Consensus 74 l~~~~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~~ 116 (1314)
++...+-++|+|.+...+.+..+.... ..|..+|+||-+..+
T Consensus 190 i~~~~P~villDE~~~~e~~~~l~~~~-~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 190 IRSMSPDVIVVDEIGREEDVEALLEAL-HAGVSIIATAHGRDV 231 (270)
T ss_pred HHhCCCCEEEEeCCCcHHHHHHHHHHH-hCCCEEEEEechhHH
Confidence 444678899999988776555442222 257788888876554
No 391
>PRK06547 hypothetical protein; Provisional
Probab=93.79 E-value=0.046 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.+++...
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998754
No 392
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.78 E-value=0.07 Score=53.01 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=57.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc--CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP--DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 78 (1314)
+++|.|..|+|||||.+.++.... ...+.++++-.... +..+. ..+.++.-..=.....+.-.+-+.+. .+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qLS~G~~qrl~laral~-~~ 100 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQLSVGERQMVEIARALA-RN 100 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEecCHHHHHHHHHHHHHh-cC
Confidence 478999999999999999986643 23455555432211 11111 11112111111111223334555555 56
Q ss_pred eEEEEEeCCCCccc------ccccCCCCCCCCceEEEEeccccc
Q 042307 79 KILVILDNIWANLD------LENVGIPFGDRGCGVLMTARSQDV 116 (1314)
Q Consensus 79 ~~LlvlD~v~~~~~------~~~~~~~~~~~~~~ilvTtr~~~~ 116 (1314)
+-++++|+-...-+ +..+...+...+..||++|.+...
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 77888898654421 111111112346678888888653
No 393
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.77 E-value=0.045 Score=57.03 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999998765
No 394
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.75 E-value=0.16 Score=56.19 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=26.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS 38 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~ 38 (1314)
++++.|++|+||||+|+.++........+ .+.+++..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~D 37 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYD 37 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEccc
Confidence 46899999999999999999887632222 35555543
No 395
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.75 E-value=0.075 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|.+|+||||+|..++....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999998876
No 396
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.72 E-value=0.18 Score=50.36 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=54.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc---CC---CEEEEEEeccCcCHHHHHHHHHHHhCC-CccccCh-hHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK---LF---DEVVYADVSQTPDIKKIQGQIADKLGL-KFYEESE-SGRARKLCE 72 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~---~f---~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~-~~~~~~~~~ 72 (1314)
+++|.|..|.|||||++.++...+... .+ ..+.++. +...+. ...+.+.+.. ....-+. ..+.-.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~--q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLP--QRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEEC--CCCccc--cccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 378999999999999999987654220 01 1123332 211111 0122222221 1111222 223344555
Q ss_pred HHhcCCeEEEEEeCCCCcccc---cccCCCCCCCCceEEEEeccccc
Q 042307 73 RLRKEKKILVILDNIWANLDL---ENVGIPFGDRGCGVLMTARSQDV 116 (1314)
Q Consensus 73 ~l~~~~~~LlvlD~v~~~~~~---~~~~~~~~~~~~~ilvTtr~~~~ 116 (1314)
.+. .++-++++|+-...-+. +.+.......+..||++|.+...
T Consensus 105 al~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~ 150 (166)
T cd03223 105 LLL-HKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSL 150 (166)
T ss_pred HHH-cCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhH
Confidence 665 67778899985443111 11100001114578888877654
No 397
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.69 E-value=0.056 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
||+|.|++|+||||+|+.++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999998864
No 398
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.67 E-value=0.054 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 58899999999999999998774
No 399
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.67 E-value=0.092 Score=50.20 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=28.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
+|.|+|..|+||||+++.+++....+ .+...+..+...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 58999999999999999999998743 344455666655
No 400
>PRK04040 adenylate kinase; Provisional
Probab=93.67 E-value=0.05 Score=55.23 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|++|+||||+++.+++...
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999999874
No 401
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=93.66 E-value=0.35 Score=47.73 Aligned_cols=55 Identities=20% Similarity=0.421 Sum_probs=44.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCE----EEEEEeccCcCHHHHHHHHHHHhC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDE----VVYADVSQTPDIKKIQGQIADKLG 55 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~----~~wv~~~~~~~~~~~~~~i~~~l~ 55 (1314)
+|-|+|++|.|||.+.++++...-.-+.|++ |.+++.+..+++..+...+-.++.
T Consensus 40 ~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~ 98 (293)
T KOG2859|consen 40 LVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLK 98 (293)
T ss_pred EEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHH
Confidence 4679999999999999998887655555654 788999999998887777766554
No 402
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.65 E-value=0.05 Score=52.12 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=18.7
Q ss_pred CEEEEcCCCchHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVA 20 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~ 20 (1314)
.|+|+|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48999999999999999998
No 403
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.60 E-value=0.34 Score=55.99 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=55.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC--CEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH-----
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF--DEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR----- 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (1314)
++|.|-+|+|||||+.+++++...+..+ ..++++-+++.. .+.++.+.+...=... ..+.+...+
T Consensus 144 ~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~ 223 (458)
T TIGR01041 144 LPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPR 223 (458)
T ss_pred EEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 6899999999999999999877533111 156777776644 4566666655432222 111112222
Q ss_pred -HHHHHHHHh--cCCeEEEEEeCCCCc
Q 042307 67 -ARKLCERLR--KEKKILVILDNIWAN 90 (1314)
Q Consensus 67 -~~~~~~~l~--~~~~~LlvlD~v~~~ 90 (1314)
...+-++++ +++++|+++||+..-
T Consensus 224 ~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 224 MALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 234555665 489999999997544
No 404
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.57 E-value=0.16 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|.|++|+||||+|+.++....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999987764
No 405
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.55 E-value=0.27 Score=56.21 Aligned_cols=85 Identities=22% Similarity=0.423 Sum_probs=51.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH------
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA------ 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~------ 67 (1314)
++|.|.+|+|||||++.++.... .+.++++-+++.. .+.++.+..+..-+.. ..+.+...+.
T Consensus 165 ~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a 240 (439)
T PRK06936 165 MGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVA 240 (439)
T ss_pred EEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHH
Confidence 68999999999999999987754 3567777777653 3444443333221111 1111122221
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 68 RKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+++|++...
T Consensus 241 ~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 241 TSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHcCCCEEEeccchhHH
Confidence 23444443 489999999998644
No 406
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.55 E-value=0.11 Score=66.25 Aligned_cols=82 Identities=24% Similarity=0.254 Sum_probs=46.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|+.|+|||++|+.+++..-.. -...+-++.++-.....+ .+-+|.. ++--..+....+...++.....+
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~----~~l~g~~-~gyvg~~~~~~l~~~~~~~p~~V 614 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV----SKLIGSP-PGYVGYNEGGQLTEAVRKKPYTV 614 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH----HHhcCCC-CcccCcCccchHHHHHHhCCCeE
Confidence 4689999999999999999876422 123555665543222111 1112211 11101111223455555566689
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
++||+++..
T Consensus 615 vllDeieka 623 (821)
T CHL00095 615 VLFDEIEKA 623 (821)
T ss_pred EEECChhhC
Confidence 999999866
No 407
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.52 E-value=0.056 Score=55.96 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
||+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998876
No 408
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.50 E-value=0.21 Score=52.92 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=23.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND 26 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~ 26 (1314)
+|+|.|++|+|||||++.++...+..
T Consensus 35 iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 35 IVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 58999999999999999999888743
No 409
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.47 E-value=0.48 Score=50.39 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=28.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
++.|.|.+|+||||+|.+++.....+ -..++|++....
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 47899999999999999987654322 346889987543
No 410
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.47 E-value=0.11 Score=66.49 Aligned_cols=188 Identities=15% Similarity=0.126 Sum_probs=97.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC--CCEEEEEEeccCc----CHH--HHHHHHHHHhCCCccccChhHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL--FDEVVYADVSQTP----DIK--KIQGQIADKLGLKFYEESESGRARKLCER 73 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~--f~~~~wv~~~~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 73 (1314)
+.|+|-+|+||||..+.++-....+.. -+..+++.+.... ... .+..-+...+....... ...... ..
T Consensus 225 ~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~---~~~~~~-~e 300 (824)
T COG5635 225 LLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAK---QLIEAH-QE 300 (824)
T ss_pred eeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcc---hhhHHH-HH
Confidence 679999999999999999988775432 1234555443211 111 12222222222221111 111111 34
Q ss_pred HhcCCeEEEEEeCCCCcc------cccccC-CCCCCCCceEEEEeccccccccccCCCccEEecCCCHHHHHHHHH----
Q 042307 74 LRKEKKILVILDNIWANL------DLENVG-IPFGDRGCGVLMTARSQDVLSSKMDCQNNFLVGALNESEAWDLFK---- 142 (1314)
Q Consensus 74 l~~~~~~LlvlD~v~~~~------~~~~~~-~~~~~~~~~ilvTtr~~~~~~~~~~~~~~~~l~~l~~~ea~~l~~---- 142 (1314)
+.+..++++++|+++... ....+. ....-+.+++|+|+|....-. .......+++..+.++.-.....
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~-~~~~f~~~ei~~~~~~~i~~~~~~~~~ 379 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKE-EFKGFAVFEIYKFLDLQINQFILYQWL 379 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhh-hhhhhhhccchhhhHHHHHHHHHHHHH
Confidence 444899999999988762 111111 011225789999998876544 33345556666666554432222
Q ss_pred -HHh----CCCCCC--ccHHHH---HHHHHHHhCCcHHHHHHHHHHHhc------CChhHHHHHHHHh
Q 042307 143 -KLV----GDKIEN--NDLKAV---AVDIAKACGGLPIAIVTIARALRN------KNTFEWKNALREL 194 (1314)
Q Consensus 143 -~~~----~~~~~~--~~~~~~---~~~i~~~~~g~Plai~~~~~~l~~------~~~~~w~~~~~~l 194 (1314)
... +..... ...... ...-++..+..|+++.+.+..-.. ...+-|+.+++.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~ 447 (824)
T COG5635 380 DAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDAL 447 (824)
T ss_pred HHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHH
Confidence 111 111111 011111 123334447889999988854431 1555666666654
No 411
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.46 E-value=0.065 Score=54.36 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=54.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC--c-------CHH----HHHHHHHHHhCCCccccChhHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT--P-------DIK----KIQGQIADKLGLKFYEESESGRA 67 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~--~-------~~~----~~~~~i~~~l~~~~~~~~~~~~~ 67 (1314)
+|.+.|++|+|||.||..++-+.-.++.|+.++++.-.-+ . +.. ....-+.+.+..-.... ..
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~----~~ 96 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKE----KL 96 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TT----CH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChH----hH
Confidence 4789999999999999999987766688888887742110 1 111 11222233332221111 11
Q ss_pred HHHHH----------HHhcC---CeEEEEEeCCCCc--ccccccCCCCCCCCceEEEEeccccc
Q 042307 68 RKLCE----------RLRKE---KKILVILDNIWAN--LDLENVGIPFGDRGCGVLMTARSQDV 116 (1314)
Q Consensus 68 ~~~~~----------~l~~~---~~~LlvlD~v~~~--~~~~~~~~~~~~~~~~ilvTtr~~~~ 116 (1314)
+.+.. .++ + .+..+|+|++.+. .++..+... -+.+||++++--..++
T Consensus 97 ~~~~~~~~Ie~~~~~~iR-Grt~~~~~iIvDEaQN~t~~~~k~ilTR-~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 97 EELIQNGKIEIEPLAFIR-GRTFDNAFIIVDEAQNLTPEELKMILTR-IGEGSKIIITGDPSQI 158 (205)
T ss_dssp HHHHHTTSEEEEEGGGGT-T--B-SEEEEE-SGGG--HHHHHHHHTT-B-TT-EEEEEE-----
T ss_pred HHHhhcCeEEEEehhhhc-CccccceEEEEecccCCCHHHHHHHHcc-cCCCcEEEEecCceee
Confidence 11111 111 2 4678999998765 466665333 3568999998766544
No 412
>PRK15453 phosphoribulokinase; Provisional
Probab=93.46 E-value=0.32 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|.+|+||||+|+.+++..+
T Consensus 7 iI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 7 IIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999997765
No 413
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.34 E-value=0.19 Score=50.95 Aligned_cols=113 Identities=23% Similarity=0.289 Sum_probs=60.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC--cCHHH------HHHHHHHHhCCCcc------ccCh-hH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT--PDIKK------IQGQIADKLGLKFY------EESE-SG 65 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~------~~~~i~~~l~~~~~------~~~~-~~ 65 (1314)
+++|.|..|+|||||++.++..... ..+.++++-... .+... ...++++.++.... .-+. ..
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 4789999999999999999876432 344444432111 11111 11124555554321 1111 12
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCccc------ccccCCCCCCC-CceEEEEecccccc
Q 042307 66 RARKLCERLRKEKKILVILDNIWANLD------LENVGIPFGDR-GCGVLMTARSQDVL 117 (1314)
Q Consensus 66 ~~~~~~~~l~~~~~~LlvlD~v~~~~~------~~~~~~~~~~~-~~~ilvTtr~~~~~ 117 (1314)
+.-.+.+.+. ..+-++++|+-...-+ +.++....... +..||++|.+....
T Consensus 104 qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 104 QRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2334555565 6778899998654321 11111111222 66888888776543
No 414
>COG4240 Predicted kinase [General function prediction only]
Probab=93.34 E-value=0.26 Score=49.17 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=52.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC-----ccccChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK-----FYEESESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~~~~l~ 75 (1314)
+|+|.|+-|+||||++..+++....+.. ..+...++.+-.-....+..++++...- .++.-+......+.+.+.
T Consensus 52 i~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLnai~ 130 (300)
T COG4240 52 IVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIA 130 (300)
T ss_pred EEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHHHHh
Confidence 5899999999999999999999886543 4788887776555555566666664221 222233444566777776
Q ss_pred cCC
Q 042307 76 KEK 78 (1314)
Q Consensus 76 ~~~ 78 (1314)
+++
T Consensus 131 ~g~ 133 (300)
T COG4240 131 RGG 133 (300)
T ss_pred cCC
Confidence 554
No 415
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.53 Score=53.09 Aligned_cols=68 Identities=28% Similarity=0.402 Sum_probs=42.5
Q ss_pred EEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEEE
Q 042307 3 GVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKILV 82 (1314)
Q Consensus 3 ~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~Ll 82 (1314)
.+.|++|.|||-||+.++.+.... +.+++.. .+.....+.. ...++.+..--+..++..+
T Consensus 190 LLfGPpgtGKtmL~~aiAsE~~at-------ff~iSas------------sLtsK~~Ge~-eK~vralf~vAr~~qPsvi 249 (428)
T KOG0740|consen 190 LLFGPPGTGKTMLAKAIATESGAT-------FFNISAS------------SLTSKYVGES-EKLVRALFKVARSLQPSVI 249 (428)
T ss_pred heecCCCCchHHHHHHHHhhhcce-------EeeccHH------------HhhhhccChH-HHHHHHHHHHHHhcCCeEE
Confidence 478999999999999999987632 2333221 1211222222 2344555555555688889
Q ss_pred EEeCCCCc
Q 042307 83 ILDNIWAN 90 (1314)
Q Consensus 83 vlD~v~~~ 90 (1314)
++|+++..
T Consensus 250 fidEidsl 257 (428)
T KOG0740|consen 250 FIDEIDSL 257 (428)
T ss_pred EechhHHH
Confidence 99998754
No 416
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.30 E-value=0.071 Score=52.79 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
|.|+|..|+||||+++++++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999999853
No 417
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.29 E-value=0.072 Score=51.03 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND 26 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~ 26 (1314)
||.++|.+|+||||+|..+.+.....
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 57889999999999999999998754
No 418
>PRK07667 uridine kinase; Provisional
Probab=93.27 E-value=0.081 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=22.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|.+|+||||+|+.++.....
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999998763
No 419
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.24 E-value=0.48 Score=51.96 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=34.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIAD 52 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 52 (1314)
++.|.|.+|+||||+|.+++.....+. =..++|+++... ..++...+.+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEcccC--HHHHHHHHHH
Confidence 468999999999999999988765321 235889987663 3444444433
No 420
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.24 E-value=0.28 Score=56.18 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=48.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCC-----Cc-cccChhHHH------H
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGL-----KF-YEESESGRA------R 68 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~-~~~~~~~~~------~ 68 (1314)
.++|.|.+|+|||||++.++...+ ...+++++.-....++.+........... -. .+.+...+. .
T Consensus 167 ri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~ 243 (450)
T PRK06002 167 RIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTAT 243 (450)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 378999999999999988875543 12345555433444555544433333211 11 111122221 2
Q ss_pred HHHHHHh-cCCeEEEEEeCCCCc
Q 042307 69 KLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 69 ~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
.+-++++ +++++|+++||+...
T Consensus 244 ~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHcCCCEEEeccchHHH
Confidence 2334443 379999999997544
No 421
>PF13479 AAA_24: AAA domain
Probab=93.24 E-value=0.21 Score=52.16 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=41.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc--CCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK--EKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~~ 79 (1314)
+.|+|.+|+||||+|..+ +..++++............ .........-..+.....++.+ ..-
T Consensus 6 ~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g~~~~~~~~------~~~~i~i~s~~~~~~~~~~l~~~~~~y 69 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL----------PKPLFIDTENGSDSLKFLD------DGDVIPITSWEDFLEALDELEEDEADY 69 (213)
T ss_pred EEEECCCCCCHHHHHHhC----------CCeEEEEeCCCccchhhhc------CCCeeCcCCHHHHHHHHHHHHhccCCC
Confidence 789999999999999987 3467787766532211111 1111112233333444444322 344
Q ss_pred EEEEEeCCCCc
Q 042307 80 ILVILDNIWAN 90 (1314)
Q Consensus 80 ~LlvlD~v~~~ 90 (1314)
=-||+|.+...
T Consensus 70 ~tiVIDsis~~ 80 (213)
T PF13479_consen 70 DTIVIDSISWL 80 (213)
T ss_pred CEEEEECHHHH
Confidence 46788887554
No 422
>PLN02674 adenylate kinase
Probab=93.24 E-value=0.21 Score=52.42 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|.|++|+||||+|+.++.++.
T Consensus 34 i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 34 LILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999998765
No 423
>PRK05922 type III secretion system ATPase; Validated
Probab=93.21 E-value=0.38 Score=55.01 Aligned_cols=85 Identities=22% Similarity=0.356 Sum_probs=49.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc-CcCHHHHHHHHHHHhCCCc-------cccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ-TPDIKKIQGQIADKLGLKF-------YEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~------~ 67 (1314)
++|.|..|+|||||++.++...+ .+...++-+++ ...+.+.+.+......... .+.+...+ .
T Consensus 160 igI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a 235 (434)
T PRK05922 160 IGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAA 235 (434)
T ss_pred EEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHH
Confidence 68999999999999999986643 23334443443 2234455555544433221 11111122 1
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 68 RKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+++|++...
T Consensus 236 ~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 236 MTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHcCCCEEEeccchhHH
Confidence 23444444 479999999998654
No 424
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.21 E-value=0.16 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|.|..|+|||||++.++...+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 478999999999999999987654
No 425
>PRK01184 hypothetical protein; Provisional
Probab=93.18 E-value=0.33 Score=49.48 Aligned_cols=21 Identities=48% Similarity=0.814 Sum_probs=17.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~ 22 (1314)
+|+|+|++|+||||+|+ ++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 58999999999999987 4443
No 426
>PRK14527 adenylate kinase; Provisional
Probab=93.17 E-value=0.15 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.|.|++|+||||+|+.++.+..
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998875
No 427
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.16 E-value=0.19 Score=50.03 Aligned_cols=48 Identities=27% Similarity=0.354 Sum_probs=31.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKL 54 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 54 (1314)
+|.|.|.+|+||||+|.+++.+... .++|+.-....+ .+..+.|....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~~-~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPFD-DEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCCh-HHHHHHHHHHH
Confidence 4789999999999999999877531 244555444333 34444554433
No 428
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.15 E-value=0.36 Score=44.35 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=27.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
|++.|.||+||||++..++.....+. ..+.-++...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g--~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG--KPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCc
Confidence 78999999999999999999886432 2365566444
No 429
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.15 E-value=0.27 Score=47.47 Aligned_cols=35 Identities=14% Similarity=0.012 Sum_probs=28.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD 36 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~ 36 (1314)
+.|.|..|+|||+.+..++.+.........++|+.
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 68999999999999999988876543456677775
No 430
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.08 E-value=0.29 Score=54.15 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=27.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS 38 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~ 38 (1314)
||+++|++|+||||++..++....... ..|..++..
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~D 151 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQG--KKVLLAAGD 151 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC--CeEEEEecC
Confidence 588999999999999999998887432 245555543
No 431
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=0.41 Score=51.97 Aligned_cols=23 Identities=52% Similarity=0.774 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.++|++|.|||-+|+.++.+..
T Consensus 130 iLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 130 ILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred ceecCCCCchHHHHHHHHHHHcC
Confidence 67899999999999999999876
No 432
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.39 Score=56.71 Aligned_cols=146 Identities=23% Similarity=0.283 Sum_probs=80.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||.||+.++-+..+- | .+.|... ..+.+- .-...+++.+...-+++-+++
T Consensus 186 vlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~--------FVemfV-----GvGAsRVRdLF~qAkk~aP~I 245 (596)
T COG0465 186 VLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD--------FVEMFV-----GVGASRVRDLFEQAKKNAPCI 245 (596)
T ss_pred eeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh--------hhhhhc-----CCCcHHHHHHHHHhhccCCCe
Confidence 6789999999999999999887743 2 2222221 111110 112345555555555577899
Q ss_pred EEEeCCCCccc----------------ccccCCCCCC----CCceEEEEecccccccc----ccCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LENVGIPFGD----RGCGVLMTARSQDVLSS----KMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~~~~~~~----~~~~ilvTtr~~~~~~~----~~~~~~~~~l~~l~~~ea 137 (1314)
+++|.++.... +.++.....+ .|-.|+-.|...+|... ..+....+.++.-+....
T Consensus 246 IFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gR 325 (596)
T COG0465 246 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGR 325 (596)
T ss_pred EEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhH
Confidence 99999875521 2222222222 23233333555554422 223455677777777888
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLP 169 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 169 (1314)
.+.++.|+....-.+. .+ ...|++...|.-
T Consensus 326 e~IlkvH~~~~~l~~~-Vd-l~~iAr~tpGfs 355 (596)
T COG0465 326 EQILKVHAKNKPLAED-VD-LKKIARGTPGFS 355 (596)
T ss_pred HHHHHHHhhcCCCCCc-CC-HHHHhhhCCCcc
Confidence 8888877743222211 11 224777777653
No 433
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.07 E-value=0.5 Score=53.97 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=54.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc------c-----cCCCEEEEEEeccCcCHHHHHHHHHHHhC-CC-------ccccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN------D-----KLFDEVVYADVSQTPDIKKIQGQIADKLG-LK-------FYEES 62 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~------~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~~~~~ 62 (1314)
++|.|-+|+|||||+.++++.... + ..-..+++.-+++.....+.....+..-+ .. ..+.+
T Consensus 144 igIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p 223 (466)
T TIGR01040 144 IPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDP 223 (466)
T ss_pred eeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCC
Confidence 689999999999999999987651 1 11115677777776544444444444433 11 11122
Q ss_pred hhHHH------HHHHHHHh--cCCeEEEEEeCCCCc
Q 042307 63 ESGRA------RKLCERLR--KEKKILVILDNIWAN 90 (1314)
Q Consensus 63 ~~~~~------~~~~~~l~--~~~~~LlvlD~v~~~ 90 (1314)
...+. ..+-++++ +++++|+++||+...
T Consensus 224 ~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 224 TIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 22221 23555555 479999999998543
No 434
>PRK13947 shikimate kinase; Provisional
Probab=93.06 E-value=0.076 Score=53.51 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|+|++|+||||+|+.+++...
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998875
No 435
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.05 E-value=0.11 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=23.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND 26 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~ 26 (1314)
||+|+|+.|+||||++.+++...+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999998743
No 436
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.04 E-value=0.44 Score=50.68 Aligned_cols=91 Identities=13% Similarity=0.224 Sum_probs=51.6
Q ss_pred EEEEcCCCchHHHHH-HHHHHHhhcccCCCE-EEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH-----
Q 042307 2 IGVYGIGGVGKTMLV-KEVARQARNDKLFDE-VVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR----- 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (1314)
++|.|.+|+|||+|| ..++++.. -+. ++++-+++.. .+.++.+.+.+.-... ..+++...+
T Consensus 72 ~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~ 147 (274)
T cd01132 72 ELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPY 147 (274)
T ss_pred EEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHH
Confidence 579999999999996 44554432 334 4677776653 4566666665432211 111111221
Q ss_pred -HHHHHHHHh-cCCeEEEEEeCCCCc-cccccc
Q 042307 67 -ARKLCERLR-KEKKILVILDNIWAN-LDLENV 96 (1314)
Q Consensus 67 -~~~~~~~l~-~~~~~LlvlD~v~~~-~~~~~~ 96 (1314)
.-.+-++++ +++++|+|+||+... ..++++
T Consensus 148 ~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 148 TGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 123334444 379999999998654 334443
No 437
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.04 E-value=0.29 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|.|.|++|+||||+|+.++....
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 438
>PRK13949 shikimate kinase; Provisional
Probab=93.01 E-value=0.094 Score=52.26 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|+|+.|+||||+|+.++....
T Consensus 4 I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998875
No 439
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.00 E-value=0.025 Score=55.38 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=18.0
Q ss_pred CcccEEEEecCCCcccccchhHHhhhccccEEeEee
Q 042307 1008 QNLVLVRIFECQRLKSVFPTSVAKSLLQLERLSINN 1043 (1314)
Q Consensus 1008 ~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~i~~ 1043 (1314)
++|+.|+|++|+++++-.-.++ ..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHH-HHhhhhHHHHhcC
Confidence 5555556655665555333333 4445555555544
No 440
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.99 E-value=0.073 Score=53.75 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.+.|++|+||||+|+++.....
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 588999999999999999988764
No 441
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.96 E-value=0.23 Score=51.03 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|+|+.|.||||+++.++...
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999988654
No 442
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.95 E-value=0.08 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|+.|+|||||++.++....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998754
No 443
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=92.93 E-value=0.43 Score=55.34 Aligned_cols=89 Identities=22% Similarity=0.252 Sum_probs=56.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc--CCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH-----
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK--LFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR----- 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~--~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (1314)
++|.|-+|+|||+|+.+++++...++ .-..++++-+++.. .+.++.+.+.+.=.+. ..+.+...+
T Consensus 146 ~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 225 (460)
T PRK04196 146 LPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPR 225 (460)
T ss_pred EEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHH
Confidence 68999999999999999998865321 11157788887654 5666666665542222 111122222
Q ss_pred -HHHHHHHHh--cCCeEEEEEeCCCCc
Q 042307 67 -ARKLCERLR--KEKKILVILDNIWAN 90 (1314)
Q Consensus 67 -~~~~~~~l~--~~~~~LlvlD~v~~~ 90 (1314)
...+-++++ +++++|+++||+..-
T Consensus 226 ~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 226 MALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 234555665 479999999997543
No 444
>PF13245 AAA_19: Part of AAA domain
Probab=92.91 E-value=0.1 Score=43.49 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc--ccCCCEEEEEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN--DKLFDEVVYAD 36 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~--~~~f~~~~wv~ 36 (1314)
+.|.|++|+|||+++.+.+...-. ...-+.+..+.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 567999999999666555544431 12233455554
No 445
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.91 E-value=0.71 Score=49.34 Aligned_cols=142 Identities=22% Similarity=0.243 Sum_probs=79.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCH-HHHHHHHHHHhCCC----c-cccChhHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDI-KKIQGQIADKLGLK----F-YEESESGRARKLCERLR 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~----~-~~~~~~~~~~~~~~~l~ 75 (1314)
|.|+|+.|.|||++......+.+ . .=+..+-|.+...-.. .-..+.|.+++... . ...+-.+...++...+.
T Consensus 52 viiigprgsgkT~li~~~Ls~~q-~-~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~ 129 (408)
T KOG2228|consen 52 VIIIGPRGSGKTILIDTRLSDIQ-E-NGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALK 129 (408)
T ss_pred eEEEccCCCCceEeeHHHHhhHH-h-cCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHh
Confidence 67999999999999999888832 1 1122344444443222 12344444444322 1 12233455667777776
Q ss_pred c-----CCeEEEEEeCCCCccc---------ccccCCCCCCCCceEEEEeccccccc------cccCCCccEEecCCCHH
Q 042307 76 K-----EKKILVILDNIWANLD---------LENVGIPFGDRGCGVLMTARSQDVLS------SKMDCQNNFLVGALNES 135 (1314)
Q Consensus 76 ~-----~~~~LlvlD~v~~~~~---------~~~~~~~~~~~~~~ilvTtr~~~~~~------~~~~~~~~~~l~~l~~~ 135 (1314)
+ +.++++|+|.+|--.. +-++..-...|-|-|-+|||-..... ++.....++-++.+.-+
T Consensus 130 ~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~ 209 (408)
T KOG2228|consen 130 KGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLG 209 (408)
T ss_pred cCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChH
Confidence 4 3568999998764411 11111111224566778998754221 12333335556778888
Q ss_pred HHHHHHHHHh
Q 042307 136 EAWDLFKKLV 145 (1314)
Q Consensus 136 ea~~l~~~~~ 145 (1314)
+-++++++..
T Consensus 210 ~yv~l~r~ll 219 (408)
T KOG2228|consen 210 DYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHh
Confidence 8888888776
No 446
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.90 E-value=0.64 Score=50.93 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=34.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQI 50 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 50 (1314)
++|.|..|+|||+|+++++++.. -+.++++-+++.. .+.+++.++
T Consensus 160 ~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 160 AAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred EEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 58999999999999999988643 4578888887754 455555554
No 447
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.90 E-value=0.079 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|.|.|++|+||||+|+.++....
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 448
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.90 E-value=0.34 Score=55.86 Aligned_cols=88 Identities=24% Similarity=0.404 Sum_probs=54.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC--------------ccccChhHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK--------------FYEESESGR 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~~~~~~ 66 (1314)
++|.|-+|+|||+|+.+++...... +-+.++++-+++.. .+.+++..+...-... ..+.+...+
T Consensus 164 ~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R 242 (494)
T CHL00060 164 IGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGAR 242 (494)
T ss_pred EeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHH
Confidence 6899999999999999998884321 12678888887754 4566666655411100 011111111
Q ss_pred ------HHHHHHHHhc-C-CeEEEEEeCCCCc
Q 042307 67 ------ARKLCERLRK-E-KKILVILDNIWAN 90 (1314)
Q Consensus 67 ------~~~~~~~l~~-~-~~~LlvlD~v~~~ 90 (1314)
...+-++++. + +++|+++||+...
T Consensus 243 ~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 243 MRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 2345566653 4 4999999998654
No 449
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.90 E-value=0.091 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|-||+|+||+|+|+.++....
T Consensus 6 ~IAIDGPagsGKsTvak~lA~~Lg 29 (222)
T COG0283 6 IIAIDGPAGSGKSTVAKILAEKLG 29 (222)
T ss_pred EEEEeCCCccChHHHHHHHHHHhC
Confidence 589999999999999999999876
No 450
>PRK14526 adenylate kinase; Provisional
Probab=92.89 E-value=0.27 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|++|+||||+|+.++....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999987764
No 451
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.86 E-value=0.078 Score=54.49 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|++|+||||+|+.++...
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999775
No 452
>PLN02459 probable adenylate kinase
Probab=92.75 E-value=0.39 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|.|++|+||||+|+.++....
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67889999999999999998764
No 453
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.72 E-value=0.12 Score=51.05 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND 26 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~ 26 (1314)
+|+|+|..|+|||||+..++.....+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhc
Confidence 57999999999999999999887643
No 454
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.72 E-value=0.081 Score=53.76 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988764
No 455
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.71 E-value=0.14 Score=50.71 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=58.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
+++|.|..|.||||+++.++.... ...+.++++........ .....+.++.-..-.....+...+.+.+. ..+-
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~qlS~G~~~r~~l~~~l~-~~~~ 100 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLP--LEELRRRIGYVPQLSGGQRQRVALARALL-LNPD 100 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCC--HHHHHhceEEEeeCCHHHHHHHHHHHHHh-cCCC
Confidence 478999999999999999987654 23455565543221110 11111222211111111223334555555 5678
Q ss_pred EEEEeCCCCccc------ccccCCCCCCCCceEEEEeccccccc
Q 042307 81 LVILDNIWANLD------LENVGIPFGDRGCGVLMTARSQDVLS 118 (1314)
Q Consensus 81 LlvlD~v~~~~~------~~~~~~~~~~~~~~ilvTtr~~~~~~ 118 (1314)
++++|+....-+ +..........+..++++|-+.....
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 889998765422 11111111223567888887766544
No 456
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.71 E-value=0.35 Score=51.85 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=51.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc-CC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEESESGRARKLCERLRK-EK 78 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~ 78 (1314)
+|+++|.+|+||||+++.++.....+. ..+.+++..... ....-....++.++...........+....+.+.+ .+
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 478999999999999999988765322 246667665332 12222233444455444333333444444444542 35
Q ss_pred eEEEEEeCCCCc
Q 042307 79 KILVILDNIWAN 90 (1314)
Q Consensus 79 ~~LlvlD~v~~~ 90 (1314)
.-++++|.....
T Consensus 155 ~D~ViIDt~Gr~ 166 (270)
T PRK06731 155 VDYILIDTAGKN 166 (270)
T ss_pred CCEEEEECCCCC
Confidence 678888986543
No 457
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.70 E-value=0.92 Score=47.03 Aligned_cols=181 Identities=13% Similarity=0.135 Sum_probs=99.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc----ccCCCEEEEEEeccC---------------------cCHHHHHHHHHHHhCC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN----DKLFDEVVYADVSQT---------------------PDIKKIQGQIADKLGL 56 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~----~~~f~~~~wv~~~~~---------------------~~~~~~~~~i~~~l~~ 56 (1314)
..++|++|.||-|.+..+.++.-. +-+.+..-|..-+.. ..-+.+.+++++.++.
T Consensus 37 ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQ 116 (351)
T KOG2035|consen 37 LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQ 116 (351)
T ss_pred EEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHh
Confidence 358999999999999988877542 112233444433321 0112344444444433
Q ss_pred CccccChhHHHHHHHHHHhcCCeE-EEEEeCCCCc--ccccccCC--CCCCCCceEEEEeccc--cccccccCCCccEEe
Q 042307 57 KFYEESESGRARKLCERLRKEKKI-LVILDNIWAN--LDLENVGI--PFGDRGCGVLMTARSQ--DVLSSKMDCQNNFLV 129 (1314)
Q Consensus 57 ~~~~~~~~~~~~~~~~~l~~~~~~-LlvlD~v~~~--~~~~~~~~--~~~~~~~~ilvTtr~~--~~~~~~~~~~~~~~l 129 (1314)
+..-+. ...+.| ++|+..+++. +.-..++. .--...+|+|+...+- -+.+ --...-.+++
T Consensus 117 t~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIep-IrSRCl~iRv 183 (351)
T KOG2035|consen 117 TQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEP-IRSRCLFIRV 183 (351)
T ss_pred hcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhH-HhhheeEEeC
Confidence 211100 012333 5666666654 11111211 0012457877765442 2222 1122345889
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCc-HHHHHHHHHHHhcC----------ChhHHHHHHHHhcC
Q 042307 130 GALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGL-PIAIVTIARALRNK----------NTFEWKNALRELTR 196 (1314)
Q Consensus 130 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~~l~~~----------~~~~w~~~~~~l~~ 196 (1314)
.+.+++|....+.+.+..+.-. ...+.+.+|+++++|. -.|+-++-..--.+ +.-+|+.+..+...
T Consensus 184 paps~eeI~~vl~~v~~kE~l~-lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 184 PAPSDEEITSVLSKVLKKEGLQ-LPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred CCCCHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHH
Confidence 9999999999999888533222 2378899999999986 45555443222111 45579888877654
No 458
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=92.70 E-value=0.15 Score=49.98 Aligned_cols=79 Identities=23% Similarity=0.164 Sum_probs=41.5
Q ss_pred EEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-----CHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcC-
Q 042307 4 VYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-----DIKKIQGQIADKLGLKFYEESESGRARKLCERLRKE- 77 (1314)
Q Consensus 4 i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~- 77 (1314)
|.|++|+||||+|+.++.++. | ..|++++-. .-......+.+.+... ...++.-...-+..++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~----~---~~is~~~llr~~~~~~s~~g~~i~~~l~~g-~~vp~~~v~~ll~~~l~~~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG----L---VHISVGDLLREEIKSDSELGKQIQEYLDNG-ELVPDELVIELLKERLEQPP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT----S---EEEEHHHHHHHHHHTTSHHHHHHHHHHHTT-SS--HHHHHHHHHHHHHSGG
T ss_pred CcCCCCCChHHHHHHHHHhcC----c---ceechHHHHHHHHhhhhHHHHHHHHHHHhh-ccchHHHHHHHHHHHHhhhc
Confidence 689999999999999999875 3 345443200 0011112222223111 1112333344555556543
Q ss_pred CeEEEEEeCCCCc
Q 042307 78 KKILVILDNIWAN 90 (1314)
Q Consensus 78 ~~~LlvlD~v~~~ 90 (1314)
...-+|+|+.-..
T Consensus 73 ~~~g~ildGfPrt 85 (151)
T PF00406_consen 73 CNRGFILDGFPRT 85 (151)
T ss_dssp TTTEEEEESB-SS
T ss_pred ccceeeeeecccc
Confidence 3456789997554
No 459
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.69 E-value=0.75 Score=52.90 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=50.8
Q ss_pred EEEEcCCCchHHHHH-HHHHHHhhc-----ccCCCEEEEEEeccCc-CHHHHHHHHHHHhC-CC-------ccccChhHH
Q 042307 2 IGVYGIGGVGKTMLV-KEVARQARN-----DKLFDEVVYADVSQTP-DIKKIQGQIADKLG-LK-------FYEESESGR 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla-~~~~~~~~~-----~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~-~~-------~~~~~~~~~ 66 (1314)
++|.|..|+|||+|| ..++++... .+.-+.++++-+++.. .+.++.+. ++.-+ .. ..+++...+
T Consensus 192 ~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~-L~e~GaL~~TvVV~AtAdep~~~r 270 (574)
T PTZ00185 192 ELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRL-LRSYGALRYTTVMAATAAEPAGLQ 270 (574)
T ss_pred EEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHH-HHhcCCccceEEEEECCCCCHHHH
Confidence 579999999999997 556666522 1234568888888765 34443333 33322 21 111111211
Q ss_pred ------HHHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 67 ------ARKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 67 ------~~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
...+-+.++ +++++|+|+||+..-
T Consensus 271 ~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 271 YLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 123333443 479999999998544
No 460
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.63 E-value=0.16 Score=55.63 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=35.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQ 49 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 49 (1314)
+|.+.|.||+||||+|...+-...... ..+.-|+.....++.+++..
T Consensus 4 iv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 4 IVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 478899999999999999888887553 44777777666666655544
No 461
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.62 E-value=0.19 Score=55.62 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=23.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND 26 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~ 26 (1314)
+|+|.|.+|+||||++..+....+..
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999998888744
No 462
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.59 E-value=0.08 Score=29.33 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=6.8
Q ss_pred CCCEEEccCccCcccc
Q 042307 424 QLEILSFQGSNIEQLP 439 (1314)
Q Consensus 424 ~L~~L~L~~~~i~~lp 439 (1314)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 463
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.55 E-value=0.17 Score=50.90 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=56.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC------ccc--------cCh-hH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK------FYE--------ESE-SG 65 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~--------~~~-~~ 65 (1314)
+++|.|..|.|||||++.++..... ..+.++++-....... ..+.+.++.- ... -+. ..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 4799999999999999999876432 3344444322111100 0111111100 000 111 11
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCccccc------ccCCCCCCCCceEEEEeccccccc
Q 042307 66 RARKLCERLRKEKKILVILDNIWANLDLE------NVGIPFGDRGCGVLMTARSQDVLS 118 (1314)
Q Consensus 66 ~~~~~~~~l~~~~~~LlvlD~v~~~~~~~------~~~~~~~~~~~~ilvTtr~~~~~~ 118 (1314)
+.-.+.+.+. .++-++++|+-...-+.. ++.......|..||++|.+.....
T Consensus 102 qrv~laral~-~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 102 QRLALAQALL-HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHH-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2234555555 677889999865542211 111112224677888888766433
No 464
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.54 E-value=0.092 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|++|+|||||++++..+.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999876
No 465
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.78 Score=54.55 Aligned_cols=147 Identities=17% Similarity=0.204 Sum_probs=75.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
++.++|.+|+||||+++.++.....+ ++-+++.+ ++.+- .. ........+..+-+.-.+.
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h-----~~evdc~e----------l~~~s----~~-~~etkl~~~f~~a~~~~pa 492 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLH-----LLEVDCYE----------LVAES----AS-HTETKLQAIFSRARRCSPA 492 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCc-----eEeccHHH----------Hhhcc----cc-hhHHHHHHHHHHHhhcCce
Confidence 47899999999999999999987622 44444321 11000 00 0111122222222223455
Q ss_pred EEEEeCCCCc-------ccc------ccc----CCCCCCCCceEEEEecc-cccccc-ccCCCccEEecCCCHHHHHHHH
Q 042307 81 LVILDNIWAN-------LDL------ENV----GIPFGDRGCGVLMTARS-QDVLSS-KMDCQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 81 LlvlD~v~~~-------~~~------~~~----~~~~~~~~~~ilvTtr~-~~~~~~-~~~~~~~~~l~~l~~~ea~~l~ 141 (1314)
.|.+-|++-. ++. +.. ..++..++.-++.||.+ +.+... .....+.++++.+++++..++|
T Consensus 493 vifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iL 572 (953)
T KOG0736|consen 493 VLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEIL 572 (953)
T ss_pred EEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHH
Confidence 5555544321 111 000 01223344444555433 444432 1123467889999999999999
Q ss_pred HHHhCCCCCCccHHHHHHHHHHHhCCcH
Q 042307 142 KKLVGDKIENNDLKAVAVDIAKACGGLP 169 (1314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 169 (1314)
+-+..... .......+.+++++.|.-
T Consensus 573 q~y~~~~~--~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 573 QWYLNHLP--LNQDVNLKQLARKTSGFS 598 (953)
T ss_pred HHHHhccc--cchHHHHHHHHHhcCCCC
Confidence 98884322 222333456666666643
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.51 E-value=0.17 Score=57.23 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=47.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
+|.|.|+.|+||||+++.++..... .....++.- .++ .+.........+.....+.........+...++ ..+-
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~ti-Edp--~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr-~~pd 197 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINK--NAAGHIITI-EDP--IEYVHRNKRSLINQREVGLDTLSFANALRAALR-EDPD 197 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEEE-cCC--hhhhccCccceEEccccCCCCcCHHHHHHHhhc-cCCC
Confidence 4789999999999999998877642 233333332 221 111110000000000011111122334444554 6788
Q ss_pred EEEEeCCCCcccccc
Q 042307 81 LVILDNIWANLDLEN 95 (1314)
Q Consensus 81 LlvlD~v~~~~~~~~ 95 (1314)
.|++|++.+.+.+..
T Consensus 198 ~i~vgEird~~~~~~ 212 (343)
T TIGR01420 198 VILIGEMRDLETVEL 212 (343)
T ss_pred EEEEeCCCCHHHHHH
Confidence 899999988766554
No 467
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.49 E-value=0.58 Score=51.55 Aligned_cols=85 Identities=27% Similarity=0.401 Sum_probs=49.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec-cCcCHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS-QTPDIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|..|+|||||++.++.... .+..+..-++ ...++.+........-+.. ..+.+...+ .
T Consensus 72 i~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a 147 (326)
T cd01136 72 LGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTA 147 (326)
T ss_pred EEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999998886654 2333333333 2345566555555443221 111112222 1
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 68 RKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+++||+...
T Consensus 148 ~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 148 TAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHcCCCeEEEeccchHH
Confidence 22333333 478999999997543
No 468
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.46 E-value=0.29 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|.|..|+|||||++.++....
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 478999999999999999987654
No 469
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.44 E-value=0.11 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998864
No 470
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=92.42 E-value=0.26 Score=50.33 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=33.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc----CcCHHHHHHHHHHHhCCCc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ----TPDIKKIQGQIADKLGLKF 58 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~----~~~~~~~~~~i~~~l~~~~ 58 (1314)
+|+|+|..|+||||+++.+..... +. ++++.. -.....++..+.+.+|...
T Consensus 8 ~IglTG~iGsGKStv~~~l~~~lg----~~---vidaD~i~~~l~~~~~~~~~i~~~fG~~i 62 (204)
T PRK14733 8 PIGITGGIASGKSTATRILKEKLN----LN---VVCADTISREITKKPSVIKKIAEKFGDEI 62 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC----Ce---EEeccHHHHHHHCchHHHHHHHHHhCHHh
Confidence 389999999999999999986543 22 233222 1111346677777777653
No 471
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.41 E-value=0.38 Score=54.84 Aligned_cols=40 Identities=28% Similarity=0.368 Sum_probs=30.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
||.|.|.+|+|||.||..++.+.........++++.....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 5899999999999999999999822233455666665543
No 472
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.40 E-value=1 Score=43.79 Aligned_cols=108 Identities=21% Similarity=0.189 Sum_probs=56.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC---cCHHHHHHHHHHHhC--------CC--ccccChhHH-
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT---PDIKKIQGQIADKLG--------LK--FYEESESGR- 66 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~--------~~--~~~~~~~~~- 66 (1314)
+|-|++-.|.||||+|...+-+...... .|.++-+-+. ..-.. +++.++ .. .......+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~--~v~~vQFlKg~~~~gE~~----~l~~l~~v~~~~~g~~~~~~~~~~~~~~ 77 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGY--RVGVVQFLKGGWKYGELK----ALERLPNIEIHRMGRGFFWTTENDEEDI 77 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEEEeCCCCccCHHH----HHHhCCCcEEEECCCCCccCCCChHHHH
Confidence 3667788899999999998888764322 3555443332 22222 333331 10 000111111
Q ss_pred ------HHHHHHHHhcCCeEEEEEeCCCCcc--------cccccCCCCCCCCceEEEEecccc
Q 042307 67 ------ARKLCERLRKEKKILVILDNIWANL--------DLENVGIPFGDRGCGVLMTARSQD 115 (1314)
Q Consensus 67 ------~~~~~~~l~~~~~~LlvlD~v~~~~--------~~~~~~~~~~~~~~~ilvTtr~~~ 115 (1314)
.....+.+..+.--|+|||++-... ++.++ +.....+.-+|+|.|+..
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~l-l~~rp~~~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDL-LKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHH-HHcCCCCCEEEEECCCCC
Confidence 1222333334567799999975442 22222 111224568999999954
No 473
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.40 E-value=0.11 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|++.|.-|+||||+++.+++....
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5889999999999999999998753
No 474
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.40 E-value=0.088 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|.|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999876
No 475
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.35 E-value=0.098 Score=53.37 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.|.|.+|+||||+|+.++.+..
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 588999999999999999998853
No 476
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.29 E-value=0.37 Score=55.16 Aligned_cols=85 Identities=28% Similarity=0.429 Sum_probs=48.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-cCHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-PDIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|.+|+|||||++.++.... .+..+...+++. ..+.++.+.+...=... ..+.+...+ .
T Consensus 140 ~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a 215 (411)
T TIGR03496 140 MGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYA 215 (411)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHH
Confidence 68999999999999988886543 234444444443 33455544444332111 111122222 1
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 68 RKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+++||+..-
T Consensus 216 ~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 216 TAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHCCCCEEEEEeChHHH
Confidence 23344443 378999999997543
No 477
>PRK14530 adenylate kinase; Provisional
Probab=92.25 E-value=0.13 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|++|+||||+|+.++....
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998874
No 478
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.23 E-value=0.45 Score=54.69 Aligned_cols=86 Identities=22% Similarity=0.367 Sum_probs=50.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC-------ccccChhHH------HH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK-------FYEESESGR------AR 68 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~------~~ 68 (1314)
++|.|..|+||||+++.++.....+ .++++..-.....+.+..+.+...-+.. ..+.+...+ ..
T Consensus 166 ~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~ 242 (441)
T PRK09099 166 MGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVAT 242 (441)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHH
Confidence 6899999999999999998765421 2344443333445556555554442221 111111222 12
Q ss_pred HHHHHHh-cCCeEEEEEeCCCCc
Q 042307 69 KLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 69 ~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
.+-++++ +++++|+++|++...
T Consensus 243 tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 243 AIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHcCCCEEEeccchhHH
Confidence 3444443 478999999997544
No 479
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.17 E-value=0.15 Score=45.47 Aligned_cols=25 Identities=44% Similarity=0.582 Sum_probs=23.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|++.|.+|+||||++..++.....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999874
No 480
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.16 E-value=0.14 Score=57.72 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=43.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|||..|.|||.|+-.+|+....+.+ ....+......+.+.+.... .....+..+.+.+. ++..+
T Consensus 65 lYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~---~~~~~l~~va~~l~-~~~~l 130 (362)
T PF03969_consen 65 LYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLR---GQDDPLPQVADELA-KESRL 130 (362)
T ss_pred EEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHh---CCCccHHHHHHHHH-hcCCE
Confidence 679999999999999999999876321 11122233333333322111 11222445555665 66679
Q ss_pred EEEeCCC
Q 042307 82 VILDNIW 88 (1314)
Q Consensus 82 lvlD~v~ 88 (1314)
|.||++.
T Consensus 131 LcfDEF~ 137 (362)
T PF03969_consen 131 LCFDEFQ 137 (362)
T ss_pred EEEeeee
Confidence 9999854
No 481
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.15 E-value=0.57 Score=55.85 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=28.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCC-CEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLF-DEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f-~~~~wv~~~~ 39 (1314)
++.|.|.+|+||||+|.+++..-..+ + ..++||.+.+
T Consensus 23 ~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE 60 (484)
T TIGR02655 23 STLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEE 60 (484)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEec
Confidence 46899999999999999997764322 2 3588888864
No 482
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.12 E-value=0.25 Score=47.91 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=28.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS 38 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~ 38 (1314)
+|++.|.+|+||||++..++....... ..+.+++..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g--~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARG--KRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEeC
Confidence 689999999999999999998876442 245555554
No 483
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.11 E-value=0.11 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
||+|+|.+|+||||+...+....
T Consensus 6 vvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 6 VVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred EEEEEcCCCCChHHHHHHHHHHH
Confidence 58999999999999999988776
No 484
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.10 E-value=0.26 Score=54.66 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=26.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS 38 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~ 38 (1314)
+|+|.|.+|+||||++..++......+. .+..+.+.
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~--~v~~i~~D 71 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGL--KVAVIAVD 71 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEecC
Confidence 5899999999999999999988764422 34444443
No 485
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.09 E-value=0.13 Score=48.08 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
|+|.|..|+|||||++.++.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999977653
No 486
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.02 E-value=1.6 Score=47.14 Aligned_cols=23 Identities=17% Similarity=-0.049 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
..++|+.|+||+++|..++...-
T Consensus 22 yLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 22 IILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred EeeECCCCCcHHHHHHHHHHHHh
Confidence 35799999999999999998764
No 487
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=92.00 E-value=0.63 Score=53.47 Aligned_cols=85 Identities=25% Similarity=0.424 Sum_probs=49.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH------H
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR------A 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~------~ 67 (1314)
++|.|..|+|||||++.++.... .+.+++..+.... .+.++...+...-+.. ..+.....+ .
T Consensus 171 igI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a 246 (451)
T PRK05688 171 LGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYC 246 (451)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHH
Confidence 78999999999999998876432 3344444444332 4555555554443322 111111121 1
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 68 RKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 ~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+++||+...
T Consensus 247 ~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 247 TRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHCCCCEEEEecchhHH
Confidence 23444443 479999999998654
No 488
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=0.19 Score=60.98 Aligned_cols=82 Identities=23% Similarity=0.213 Sum_probs=47.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
....|+.|||||-||+.++...-.. -+..+-+++|+-..-+. ++.|-...++=-..+....+-+..++....+
T Consensus 524 FlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkHs-----VSrLIGaPPGYVGyeeGG~LTEaVRr~PySV 596 (786)
T COG0542 524 FLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKHS-----VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSV 596 (786)
T ss_pred EEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHHH-----HHHHhCCCCCCceeccccchhHhhhcCCCeE
Confidence 3568999999999999999887422 14455555554322111 2233222222111122334555555455668
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
+.||+|+..
T Consensus 597 iLlDEIEKA 605 (786)
T COG0542 597 ILLDEIEKA 605 (786)
T ss_pred EEechhhhc
Confidence 889999876
No 489
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.00 E-value=0.61 Score=49.37 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=29.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
++.|.|.+|+|||++|.+++.....+ =..++|++....
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~ 55 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER 55 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 46899999999999999998775422 245888988664
No 490
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.99 E-value=0.17 Score=52.32 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|++|+||||+|+.+.....
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998775
No 491
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.97 E-value=0.22 Score=48.19 Aligned_cols=100 Identities=23% Similarity=0.263 Sum_probs=52.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
+++|.|..|.|||||++.++...+. ..+.+|++-.. .++.-..-.....+...+.+.+. .++-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~-~~p~ 90 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLL-ENPN 90 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHh-cCCC
Confidence 4789999999999999999876542 34445543210 00000000111222334555555 5667
Q ss_pred EEEEeCCCCccc---ccccCCCCCCCCceEEEEecccccc
Q 042307 81 LVILDNIWANLD---LENVGIPFGDRGCGVLMTARSQDVL 117 (1314)
Q Consensus 81 LlvlD~v~~~~~---~~~~~~~~~~~~~~ilvTtr~~~~~ 117 (1314)
++++|+-...-+ .+.+.......+..||++|.+....
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~ 130 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 888998654311 1111100011134788888776544
No 492
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.4 Score=48.45 Aligned_cols=49 Identities=29% Similarity=0.424 Sum_probs=32.0
Q ss_pred HHHHHHhcCCeEEEEEeCCCCcccccccCC------CCCCCCceEEEEeccccccc
Q 042307 69 KLCERLRKEKKILVILDNIWANLDLENVGI------PFGDRGCGVLMTARSQDVLS 118 (1314)
Q Consensus 69 ~~~~~l~~~~~~LlvlD~v~~~~~~~~~~~------~~~~~~~~ilvTtr~~~~~~ 118 (1314)
.+.+.+. -++-+.|||.-++.-+++.+.. .+...++-+|+.|-.+.+..
T Consensus 154 EilQ~~~-lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~ 208 (251)
T COG0396 154 EILQLLL-LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLD 208 (251)
T ss_pred HHHHHHh-cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHh
Confidence 4444444 5788999999988866655421 12345777777777777666
No 493
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=91.92 E-value=0.75 Score=53.35 Aligned_cols=85 Identities=13% Similarity=0.241 Sum_probs=52.8
Q ss_pred EEEEcCCCchHHHHHH-HHHHHhhcccCCCE-EEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH----
Q 042307 2 IGVYGIGGVGKTMLVK-EVARQARNDKLFDE-VVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA---- 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~---- 67 (1314)
++|.|..|+||||||. .++++.. -+. ++++-+++.. .+.++.+.+.+.=... ..+.+...+.
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~ 240 (497)
T TIGR03324 165 ELILGDRQTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPY 240 (497)
T ss_pred EEeecCCCCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHH
Confidence 5799999999999974 6666533 344 7888887754 5666666665543222 1111222221
Q ss_pred --HHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 68 --RKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 68 --~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
..+-++++ +++++|+|+||+...
T Consensus 241 ~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 241 AATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 23444443 479999999998544
No 494
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.82 E-value=0.93 Score=46.06 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=42.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc-CCeE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK-EKKI 80 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~ 80 (1314)
|.+||--|+|||.|++.+.+....+ .-..+-|+=++ ...+-.+...|+. ..++
T Consensus 88 VLLwGaRGtGKSSLVKA~~~e~~~~--glrLVEV~k~d------------------------l~~Lp~l~~~Lr~~~~kF 141 (287)
T COG2607 88 VLLWGARGTGKSSLVKALLNEYADE--GLRLVEVDKED------------------------LATLPDLVELLRARPEKF 141 (287)
T ss_pred eEEecCCCCChHHHHHHHHHHHHhc--CCeEEEEcHHH------------------------HhhHHHHHHHHhcCCceE
Confidence 6799999999999999999998744 33444443111 1122234444443 6899
Q ss_pred EEEEeCCCCc
Q 042307 81 LVILDNIWAN 90 (1314)
Q Consensus 81 LlvlD~v~~~ 90 (1314)
++..||..-.
T Consensus 142 IlFcDDLSFe 151 (287)
T COG2607 142 ILFCDDLSFE 151 (287)
T ss_pred EEEecCCCCC
Confidence 9999997543
No 495
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.81 E-value=0.14 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|+|+.|+||||+|+.++....
T Consensus 7 I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcC
Confidence 78999999999999999998764
No 496
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.81 E-value=0.46 Score=54.37 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=48.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-cCHHHHHHHHHHHhCCC-------ccccChhHH------
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-PDIKKIQGQIADKLGLK-------FYEESESGR------ 66 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~------ 66 (1314)
.++|.|..|+|||||++.++.... .+..++.-+++. ..+.+...+....=... ..+.+...+
T Consensus 157 rigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~ 232 (433)
T PRK07594 157 RVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFV 232 (433)
T ss_pred EEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 378999999999999998886544 444555544443 34444444443211111 111111111
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 042307 67 ARKLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 67 ~~~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
...+-++++ +++++|+++||+...
T Consensus 233 a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 233 ATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 123444444 478999999998644
No 497
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.80 E-value=0.35 Score=48.50 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=58.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc-cCC--CEEEEEEeccCcCH--H-HHHHHHHHHhCCCccccChhHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND-KLF--DEVVYADVSQTPDI--K-KIQGQIADKLGLKFYEESESGRARKLCERLR 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~-~~f--~~~~wv~~~~~~~~--~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 75 (1314)
..|.|++|+||||+.+.+++-.... +.| ..+.-|+-+.+..- . --+..+...+..-.+ .. ..+-+....+
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~-cp---k~~gmmmaIr 215 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDP-CP---KAEGMMMAIR 215 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhccc-ch---HHHHHHHHHH
Confidence 3689999999999999999877643 233 22444554332100 0 001111111111111 11 1122333344
Q ss_pred cCCeEEEEEeCCCCcccccccCCCCCCCCceEEEEeccccc
Q 042307 76 KEKKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDV 116 (1314)
Q Consensus 76 ~~~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~~ 116 (1314)
.-.+=.+|+|.+...++...+... ...|.+++.|.--..+
T Consensus 216 sm~PEViIvDEIGt~~d~~A~~ta-~~~GVkli~TaHG~~i 255 (308)
T COG3854 216 SMSPEVIIVDEIGTEEDALAILTA-LHAGVKLITTAHGNGI 255 (308)
T ss_pred hcCCcEEEEeccccHHHHHHHHHH-HhcCcEEEEeeccccH
Confidence 457788999999888665554221 3467787777654433
No 498
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.77 E-value=0.82 Score=49.20 Aligned_cols=83 Identities=12% Similarity=0.188 Sum_probs=47.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc-------ChhHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE-------SESGRARKLCER 73 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~~~~ 73 (1314)
+|.|.|.+|+|||||+..+......+ . .++.+... ..+..+ ...++..+....+. .....+..-..+
T Consensus 106 ~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI~gD-~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~ 179 (290)
T PRK10463 106 VLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVIEGD-QQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADAAPR 179 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEECCC-cCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHH
Confidence 47899999999999999999987633 2 33333222 222222 12234444432221 222334444555
Q ss_pred HhcCCeEEEEEeCCCC
Q 042307 74 LRKEKKILVILDNIWA 89 (1314)
Q Consensus 74 l~~~~~~LlvlD~v~~ 89 (1314)
+.....-++|+++|..
T Consensus 180 L~~~~~d~liIEnvGn 195 (290)
T PRK10463 180 LPLDDNGILFIENVGN 195 (290)
T ss_pred HhhcCCcEEEEECCCC
Confidence 5544556788899875
No 499
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.76 E-value=0.14 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|+|.+|+||||||+.++--.+
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Confidence 479999999999999999986544
No 500
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.75 E-value=0.53 Score=53.89 Aligned_cols=86 Identities=24% Similarity=0.346 Sum_probs=48.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC-------ccccChhHH------HH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK-------FYEESESGR------AR 68 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~------~~ 68 (1314)
++|.|..|+|||||++.++...+. ..+++...-.....+.+..+..+..-+.. ..+.+...+ ..
T Consensus 143 i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~ 219 (418)
T TIGR03498 143 LGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTAT 219 (418)
T ss_pred EEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHH
Confidence 689999999999999888865542 22333332233334555555443332221 111112222 12
Q ss_pred HHHHHHh-cCCeEEEEEeCCCCc
Q 042307 69 KLCERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 69 ~~~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
.+-++++ +++++|+++||+...
T Consensus 220 ~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 220 AIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHcCCCEEEeccchhHH
Confidence 3444444 378999999997544
Done!