Query 042307
Match_columns 1314
No_of_seqs 617 out of 6221
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 08:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4E-42 1.4E-46 436.7 28.6 295 892-1248 440-740 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.9E-38 6.4E-43 403.1 32.8 629 331-1081 77-741 (768)
3 2a5y_B CED-4; apoptosis; HET: 100.0 5.7E-37 1.9E-41 370.5 19.5 287 1-309 154-472 (549)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.9E-35 2.7E-39 367.8 34.8 175 334-523 7-187 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-33 1.1E-37 353.1 35.3 405 328-806 22-441 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-33 6.2E-38 350.4 30.2 180 333-525 13-199 (606)
7 3t6q_A CD180 antigen; protein- 100.0 4.5E-33 1.5E-37 346.8 30.1 176 334-524 15-196 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 8E-32 2.7E-36 335.5 32.7 178 328-520 29-217 (606)
9 3t6q_A CD180 antigen; protein- 100.0 5.7E-31 2E-35 327.8 33.9 177 327-518 29-213 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 7.7E-30 2.6E-34 315.7 30.2 154 329-484 26-190 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 4.9E-30 1.7E-34 329.3 29.1 154 329-483 22-186 (844)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.2E-29 1.5E-33 320.6 37.2 409 334-806 7-437 (844)
13 1vt4_I APAF-1 related killer D 100.0 1.2E-30 4.1E-35 313.2 17.2 259 1-301 152-436 (1221)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-29 5.4E-34 310.9 25.2 172 336-521 10-186 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 5.4E-29 1.8E-33 308.1 28.8 498 333-960 9-531 (570)
16 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-28 4.1E-33 335.7 23.0 285 1-308 149-452 (1249)
17 2z81_A CD282 antigen, TOLL-lik 100.0 8.9E-27 3E-31 286.4 33.0 495 352-1045 4-508 (549)
18 4g8a_A TOLL-like receptor 4; l 100.0 6.7E-27 2.3E-31 294.2 30.3 147 334-484 34-186 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-27 1.5E-31 286.6 25.3 143 334-483 3-150 (520)
20 1z6t_A APAF-1, apoptotic prote 99.9 6.7E-27 2.3E-31 288.6 21.9 281 1-306 149-450 (591)
21 4g8a_A TOLL-like receptor 4; l 99.9 4.5E-26 1.6E-30 286.6 29.3 156 327-484 48-214 (635)
22 4ecn_A Leucine-rich repeat pro 99.9 9.2E-27 3.2E-31 291.0 22.6 393 331-807 323-839 (876)
23 2z7x_B TOLL-like receptor 1, v 99.9 6.6E-26 2.2E-30 276.1 28.8 141 356-519 3-150 (520)
24 4eco_A Uncharacterized protein 99.9 8.2E-27 2.8E-31 288.6 19.3 415 331-809 81-633 (636)
25 4ecn_A Leucine-rich repeat pro 99.9 7.3E-26 2.5E-30 282.9 27.9 373 353-806 323-787 (876)
26 4eco_A Uncharacterized protein 99.9 3.9E-26 1.3E-30 282.6 23.4 374 353-806 81-547 (636)
27 1o6v_A Internalin A; bacterial 99.9 2.8E-24 9.7E-29 256.6 28.9 348 328-785 43-390 (466)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-24 3.7E-29 267.4 25.5 144 333-483 33-181 (562)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.8E-24 2.7E-28 259.7 29.2 435 319-807 41-509 (562)
30 1o6v_A Internalin A; bacterial 99.9 5.7E-24 1.9E-28 254.0 25.7 344 351-807 44-387 (466)
31 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-23 1.4E-27 243.5 27.4 316 328-785 39-354 (457)
32 4fmz_A Internalin; leucine ric 99.9 4.3E-23 1.5E-27 236.8 24.2 173 327-520 40-212 (347)
33 1jl5_A Outer protein YOPM; leu 99.9 1.7E-23 5.7E-28 246.6 19.4 348 330-755 10-371 (454)
34 3v47_A TOLL-like receptor 5B a 99.9 1.4E-22 4.8E-27 242.4 26.9 144 336-483 15-166 (455)
35 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-22 6.2E-27 237.9 26.1 310 351-805 40-349 (457)
36 4fmz_A Internalin; leucine ric 99.9 2.6E-22 8.9E-27 230.3 26.2 304 350-729 41-344 (347)
37 3v47_A TOLL-like receptor 5B a 99.9 7.7E-23 2.6E-27 244.7 21.0 364 329-732 28-409 (455)
38 1jl5_A Outer protein YOPM; leu 99.9 6.7E-23 2.3E-27 241.5 19.6 188 347-584 5-206 (454)
39 3o6n_A APL1; leucine-rich repe 99.9 3.9E-22 1.3E-26 232.5 22.7 305 351-783 43-352 (390)
40 2id5_A Lingo-1, leucine rich r 99.9 1.4E-21 4.6E-26 235.0 26.4 172 334-520 14-189 (477)
41 3o6n_A APL1; leucine-rich repe 99.9 7.4E-22 2.5E-26 230.1 23.5 236 328-610 42-283 (390)
42 2id5_A Lingo-1, leucine rich r 99.9 3.7E-21 1.3E-25 231.2 27.9 248 328-610 29-283 (477)
43 3oja_B Anopheles plasmodium-re 99.9 3E-21 1E-25 237.7 23.9 155 349-520 47-205 (597)
44 3oja_B Anopheles plasmodium-re 99.9 4.1E-21 1.4E-25 236.4 23.5 236 329-611 49-290 (597)
45 2ft3_A Biglycan; proteoglycan, 99.8 2.2E-20 7.5E-25 212.2 18.3 102 379-483 55-159 (332)
46 1xku_A Decorin; proteoglycan, 99.8 1.2E-19 4.1E-24 206.0 24.2 147 332-483 32-183 (330)
47 4fcg_A Uncharacterized protein 99.8 4.2E-20 1.4E-24 208.1 18.2 174 330-519 80-265 (328)
48 1xku_A Decorin; proteoglycan, 99.8 3.4E-19 1.2E-23 202.2 24.4 290 354-691 32-329 (330)
49 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-20 4.8E-25 210.8 12.1 245 331-641 50-304 (313)
50 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-19 4.8E-24 205.5 20.5 237 332-610 34-275 (332)
51 4fcg_A Uncharacterized protein 99.8 8.3E-20 2.9E-24 205.7 17.1 132 377-522 80-221 (328)
52 3zyj_A Leucine-rich repeat-con 99.8 4.8E-19 1.6E-23 209.6 20.5 242 333-610 45-290 (440)
53 3ogk_B Coronatine-insensitive 99.8 1.6E-20 5.5E-25 233.1 7.8 37 652-689 290-326 (592)
54 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-19 4.8E-24 202.7 14.5 249 353-671 50-307 (313)
55 2z66_A Variable lymphocyte rec 99.8 3.3E-19 1.1E-23 200.0 17.3 174 335-522 11-190 (306)
56 3zyi_A Leucine-rich repeat-con 99.8 6.9E-19 2.4E-23 209.0 20.4 176 332-523 55-234 (452)
57 3ogk_B Coronatine-insensitive 99.8 1.2E-20 4.2E-25 234.1 5.3 382 351-806 110-524 (592)
58 2z80_A TOLL-like receptor 2, v 99.8 1.2E-18 4.2E-23 199.6 19.5 174 336-523 36-214 (353)
59 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-18 6E-23 191.7 18.9 147 334-483 14-165 (285)
60 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-18 5.6E-23 191.9 18.0 184 327-524 28-218 (285)
61 2z80_A TOLL-like receptor 2, v 99.8 4.2E-18 1.4E-22 195.2 20.3 199 351-584 29-233 (353)
62 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-17 6.3E-22 200.5 26.2 257 332-694 41-297 (622)
63 1z7x_W Ribonuclease inhibitor; 99.8 7E-21 2.4E-25 228.2 -4.3 66 740-806 369-438 (461)
64 2p1m_B Transport inhibitor res 99.8 1.1E-19 3.7E-24 225.8 5.3 268 717-1048 129-416 (594)
65 3zyj_A Leucine-rich repeat-con 99.8 5.5E-18 1.9E-22 200.5 19.6 224 327-584 60-290 (440)
66 3zyi_A Leucine-rich repeat-con 99.8 6.3E-18 2.1E-22 200.8 19.5 225 327-611 71-302 (452)
67 2p1m_B Transport inhibitor res 99.8 5.2E-20 1.8E-24 228.7 1.4 406 330-807 65-518 (594)
68 2z66_A Variable lymphocyte rec 99.7 5.2E-18 1.8E-22 190.3 15.0 225 328-611 25-260 (306)
69 2o6q_A Variable lymphocyte rec 99.7 9.1E-17 3.1E-21 175.9 20.8 180 331-525 16-199 (270)
70 1p9a_G Platelet glycoprotein I 99.7 8.9E-17 3E-21 177.1 20.2 181 329-525 8-190 (290)
71 3o53_A Protein LRIM1, AGAP0063 99.7 1.7E-18 5.8E-23 194.6 4.8 235 333-611 12-249 (317)
72 1wwl_A Monocyte differentiatio 99.7 1E-17 3.5E-22 187.7 9.8 182 332-526 64-272 (312)
73 1z7x_W Ribonuclease inhibitor; 99.7 8.5E-19 2.9E-23 210.0 0.9 250 331-610 3-295 (461)
74 2z62_A TOLL-like receptor 4, v 99.7 9.6E-17 3.3E-21 176.7 17.0 183 328-525 25-218 (276)
75 2o6q_A Variable lymphocyte rec 99.7 2.3E-16 7.8E-21 172.7 19.8 179 328-520 34-218 (270)
76 2xwt_C Thyrotropin receptor; s 99.7 7.9E-17 2.7E-21 172.9 14.5 183 329-525 29-223 (239)
77 2z62_A TOLL-like receptor 4, v 99.7 3.3E-16 1.1E-20 172.4 17.7 178 335-525 11-195 (276)
78 3g06_A SSPH2 (leucine-rich rep 99.7 1.5E-15 5.3E-20 183.7 24.7 238 328-639 58-295 (622)
79 1h6u_A Internalin H; cell adhe 99.7 5.2E-16 1.8E-20 173.0 19.0 174 329-524 39-212 (308)
80 3m19_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 166.4 18.7 176 332-522 15-194 (251)
81 3rfs_A Internalin B, repeat mo 99.7 1.7E-15 6E-20 165.7 19.0 179 326-520 36-218 (272)
82 2xwt_C Thyrotropin receptor; s 99.7 4.3E-16 1.5E-20 167.2 13.9 138 343-484 23-169 (239)
83 1wwl_A Monocyte differentiatio 99.7 3.9E-17 1.3E-21 183.0 5.5 154 351-520 41-214 (312)
84 1h6t_A Internalin B; cell adhe 99.7 1.1E-15 3.7E-20 168.8 16.9 176 327-524 42-217 (291)
85 1p9a_G Platelet glycoprotein I 99.6 1.9E-15 6.5E-20 166.5 17.9 176 328-520 28-208 (290)
86 1h6u_A Internalin H; cell adhe 99.6 3E-15 1E-19 166.8 19.5 180 324-525 56-235 (308)
87 3oja_A Leucine-rich immune mol 99.6 4.2E-16 1.4E-20 185.5 13.2 122 354-483 35-156 (487)
88 3rfs_A Internalin B, repeat mo 99.6 6.6E-16 2.3E-20 169.1 13.4 174 334-524 22-198 (272)
89 3o53_A Protein LRIM1, AGAP0063 99.6 2.2E-16 7.6E-21 177.3 8.4 237 330-611 33-274 (317)
90 3oja_A Leucine-rich immune mol 99.6 8.3E-16 2.8E-20 182.9 11.7 214 330-612 33-250 (487)
91 3m19_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 157.8 17.7 155 328-484 32-192 (251)
92 4glp_A Monocyte differentiatio 99.6 1.4E-15 4.7E-20 170.4 10.6 181 332-525 65-269 (310)
93 4ay9_X Follicle-stimulating ho 99.6 1.2E-14 4.1E-19 165.6 17.2 176 334-524 12-195 (350)
94 1m9s_A Internalin B; cell inva 99.6 7.9E-15 2.7E-19 177.5 15.5 176 327-524 39-214 (605)
95 3e6j_A Variable lymphocyte rec 99.6 2.3E-14 7.9E-19 151.8 16.8 149 333-484 21-172 (229)
96 2v70_A SLIT-2, SLIT homolog 2 99.6 1.4E-14 4.7E-19 152.3 14.9 149 334-484 14-166 (220)
97 2o6s_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 151.3 13.6 165 334-520 10-178 (208)
98 2v9t_B SLIT homolog 2 protein 99.6 2.6E-14 8.8E-19 150.2 15.1 148 334-484 14-165 (220)
99 2ast_B S-phase kinase-associat 99.6 3.1E-15 1.1E-19 170.4 8.4 103 378-481 70-178 (336)
100 1h6t_A Internalin B; cell adhe 99.6 3.6E-14 1.2E-18 156.5 16.3 180 335-536 28-207 (291)
101 1xeu_A Internalin C; cellular 99.6 6.5E-15 2.2E-19 159.6 10.0 173 329-524 17-189 (263)
102 4ay9_X Follicle-stimulating ho 99.5 2E-14 6.8E-19 163.8 14.0 184 327-525 26-220 (350)
103 4ezg_A Putative uncharacterize 99.5 2.5E-14 8.4E-19 147.8 12.4 149 328-483 41-193 (197)
104 3cvr_A Invasion plasmid antige 99.5 1.2E-13 4.2E-18 164.7 19.5 195 331-573 59-254 (571)
105 4ezg_A Putative uncharacterize 99.5 4.9E-14 1.7E-18 145.6 13.3 150 351-520 42-194 (197)
106 2ast_B S-phase kinase-associat 99.5 4.6E-15 1.6E-19 169.0 5.7 175 331-518 70-258 (336)
107 4glp_A Monocyte differentiatio 99.5 5E-14 1.7E-18 157.6 13.1 177 331-524 91-289 (310)
108 1m9s_A Internalin B; cell inva 99.5 1.4E-14 4.8E-19 175.3 8.3 172 330-523 20-191 (605)
109 2xot_A Amphoterin-induced prot 99.5 6.3E-14 2.1E-18 160.3 12.2 171 334-519 21-201 (361)
110 2ca6_A RAN GTPase-activating p 99.5 1.1E-14 3.7E-19 169.1 5.7 234 330-611 31-315 (386)
111 1xeu_A Internalin C; cellular 99.5 1.6E-13 5.4E-18 148.6 14.1 149 327-484 37-185 (263)
112 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 144.7 11.9 149 327-484 24-178 (208)
113 2v9t_B SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 141.9 13.6 148 356-520 14-165 (220)
114 2xot_A Amphoterin-induced prot 99.5 1.8E-13 6.2E-18 156.4 12.6 155 328-484 36-202 (361)
115 3goz_A Leucine-rich repeat-con 99.5 3.6E-14 1.2E-18 162.6 6.7 153 330-484 21-209 (362)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 4E-13 1.4E-17 141.1 13.9 149 355-520 13-166 (220)
117 3cvr_A Invasion plasmid antige 99.4 6.5E-13 2.2E-17 158.5 17.0 160 329-521 78-244 (571)
118 2ell_A Acidic leucine-rich nuc 99.4 3.7E-13 1.3E-17 135.1 12.4 139 377-525 23-165 (168)
119 2ca6_A RAN GTPase-activating p 99.4 2E-14 7E-19 166.7 3.0 245 343-639 21-314 (386)
120 3e6j_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 139.8 15.1 149 355-521 21-173 (229)
121 1dce_A Protein (RAB geranylger 99.4 2.1E-15 7.2E-20 181.5 -6.5 182 328-525 346-551 (567)
122 3goz_A Leucine-rich repeat-con 99.4 3.2E-13 1.1E-17 154.7 9.3 12 599-610 225-236 (362)
123 2ell_A Acidic leucine-rich nuc 99.4 1E-12 3.4E-17 131.9 11.6 131 330-464 23-164 (168)
124 2je0_A Acidic leucine-rich nuc 99.4 1.1E-12 3.9E-17 128.4 8.7 106 378-484 17-126 (149)
125 2je0_A Acidic leucine-rich nuc 99.3 2.7E-12 9.4E-17 125.7 10.1 121 331-454 17-148 (149)
126 2wfh_A SLIT homolog 2 protein 99.3 8.5E-12 2.9E-16 127.6 13.6 106 378-484 31-139 (193)
127 1a9n_A U2A', U2A'; complex (nu 99.3 3.4E-12 1.2E-16 129.0 10.0 134 374-518 15-151 (176)
128 1w8a_A SLIT protein; signaling 99.3 8.5E-12 2.9E-16 127.8 12.4 122 334-456 11-136 (192)
129 1w8a_A SLIT protein; signaling 99.3 9.3E-12 3.2E-16 127.5 11.6 123 356-483 11-138 (192)
130 2wfh_A SLIT homolog 2 protein 99.3 2.2E-11 7.4E-16 124.6 13.7 121 334-457 13-137 (193)
131 4b8c_D Glucose-repressible alc 99.3 5.1E-12 1.7E-16 157.4 9.4 150 331-484 173-329 (727)
132 1a9n_A U2A', U2A'; complex (nu 99.2 1E-11 3.5E-16 125.4 9.2 124 330-456 18-150 (176)
133 4b8c_D Glucose-repressible alc 99.2 2.7E-12 9.1E-17 159.9 3.8 145 337-484 207-354 (727)
134 2o6r_A Variable lymphocyte rec 99.2 7.9E-11 2.7E-15 119.1 13.7 121 334-456 10-134 (177)
135 2o6r_A Variable lymphocyte rec 99.2 1.4E-10 4.8E-15 117.3 13.9 125 355-484 9-137 (177)
136 2qen_A Walker-type ATPase; unk 99.2 2.2E-10 7.5E-15 131.1 16.4 265 1-302 33-349 (350)
137 1ds9_A Outer arm dynein; leuci 99.1 6.8E-13 2.3E-17 137.1 -6.1 106 375-483 45-152 (198)
138 1dce_A Protein (RAB geranylger 99.1 1.1E-10 3.7E-15 140.6 12.0 101 380-484 443-546 (567)
139 1w5s_A Origin recognition comp 99.1 1.2E-09 4.1E-14 127.9 19.4 276 2-297 53-387 (412)
140 1ds9_A Outer arm dynein; leuci 99.1 2E-12 6.7E-17 133.6 -4.2 145 333-483 25-184 (198)
141 2r9u_A Variable lymphocyte rec 99.1 4.2E-10 1.4E-14 112.7 11.5 101 381-484 15-118 (174)
142 3g39_A Variable lymphocyte rec 99.1 4.9E-10 1.7E-14 111.8 11.4 102 380-484 11-115 (170)
143 2fna_A Conserved hypothetical 99.1 9.8E-10 3.3E-14 126.1 15.2 266 1-301 32-356 (357)
144 3sb4_A Hypothetical leucine ri 99.0 4.2E-10 1.4E-14 126.7 9.9 95 330-430 48-155 (329)
145 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.8E-14 109.6 11.1 100 334-456 15-115 (174)
146 3g39_A Variable lymphocyte rec 99.0 3.6E-09 1.2E-13 105.5 12.3 79 378-456 30-112 (170)
147 2qby_B CDC6 homolog 3, cell di 98.8 3.3E-08 1.1E-12 114.3 16.1 257 2-284 48-338 (384)
148 4fdw_A Leucine rich hypothetic 98.8 7.8E-08 2.7E-12 110.2 18.0 255 331-637 113-379 (401)
149 4fdw_A Leucine rich hypothetic 98.7 3.8E-07 1.3E-11 104.5 20.5 150 351-523 111-263 (401)
150 2qby_A CDC6 homolog 1, cell di 98.7 5.8E-08 2E-12 112.6 13.0 218 1-233 47-296 (386)
151 3un9_A NLR family member X1; l 98.7 1.9E-09 6.6E-14 122.3 0.1 155 329-484 70-252 (372)
152 3sb4_A Hypothetical leucine ri 98.6 7.5E-08 2.6E-12 108.2 11.3 90 422-526 225-316 (329)
153 2ifg_A High affinity nerve gro 98.6 6.3E-08 2.2E-12 110.1 10.5 100 382-484 12-116 (347)
154 3un9_A NLR family member X1; l 98.6 5.5E-09 1.9E-13 118.6 1.3 162 351-521 70-253 (372)
155 2v1u_A Cell division control p 98.6 3.4E-07 1.1E-11 106.1 16.5 263 1-284 46-350 (387)
156 1njg_A DNA polymerase III subu 98.6 2.5E-07 8.4E-12 99.6 13.4 170 2-179 48-231 (250)
157 2chg_A Replication factor C sm 98.6 6.3E-07 2.2E-11 94.6 15.8 159 2-176 41-204 (226)
158 1fnn_A CDC6P, cell division co 98.5 1.4E-06 4.8E-11 100.8 17.5 260 2-284 47-350 (389)
159 2ifg_A High affinity nerve gro 98.5 2.2E-07 7.7E-12 105.5 10.3 87 368-456 23-113 (347)
160 3te6_A Regulatory protein SIR3 98.3 4.5E-06 1.5E-10 90.3 14.7 144 2-145 48-211 (318)
161 4fs7_A Uncharacterized protein 98.3 1.4E-05 4.7E-10 92.2 18.6 64 343-409 59-125 (394)
162 1sxj_B Activator 1 37 kDa subu 98.2 4.4E-06 1.5E-10 93.7 12.5 161 2-177 45-211 (323)
163 2ra8_A Uncharacterized protein 98.1 3.4E-06 1.2E-10 94.4 7.8 157 351-519 137-319 (362)
164 4fs7_A Uncharacterized protein 98.1 6.3E-05 2.2E-09 86.6 18.0 109 367-481 60-172 (394)
165 2qz4_A Paraplegin; AAA+, SPG7, 98.1 5.8E-05 2E-09 81.4 16.6 154 2-175 42-221 (262)
166 1hqc_A RUVB; extended AAA-ATPa 98.0 2.8E-05 9.7E-10 87.0 13.8 148 2-179 41-214 (324)
167 3e4g_A ATP synthase subunit S, 98.0 5E-06 1.7E-10 80.7 4.8 90 921-1023 61-154 (176)
168 1iqp_A RFCS; clamp loader, ext 97.9 1.8E-05 6.2E-10 88.8 9.8 158 2-177 49-213 (327)
169 1d2n_A N-ethylmaleimide-sensit 97.9 6.7E-05 2.3E-09 81.2 13.5 170 2-196 67-263 (272)
170 3e4g_A ATP synthase subunit S, 97.9 7.2E-06 2.5E-10 79.6 4.9 84 378-461 61-154 (176)
171 4b4t_J 26S protease regulatory 97.9 8.8E-05 3E-09 82.2 14.0 145 2-168 185-353 (405)
172 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00031 1E-08 77.6 18.1 156 2-177 48-224 (322)
173 1io0_A Tropomodulin; LRR prote 97.9 7.3E-06 2.5E-10 82.5 4.1 109 374-483 32-163 (185)
174 2chq_A Replication factor C sm 97.8 8.6E-05 2.9E-09 82.9 13.3 156 2-175 41-203 (319)
175 2z4s_A Chromosomal replication 97.8 2.6E-05 8.9E-10 90.3 8.6 157 2-174 133-304 (440)
176 3h4m_A Proteasome-activating n 97.8 0.00013 4.6E-09 79.6 13.8 152 2-175 54-230 (285)
177 1jr3_A DNA polymerase III subu 97.8 5.9E-05 2E-09 86.4 11.0 167 2-176 41-221 (373)
178 1sxj_A Activator 1 95 kDa subu 97.7 4.3E-05 1.5E-09 90.8 8.7 178 2-193 80-273 (516)
179 4b4t_H 26S protease regulatory 97.7 0.00017 5.8E-09 81.0 12.7 145 2-168 246-414 (467)
180 2ra8_A Uncharacterized protein 97.7 2.4E-05 8.4E-10 87.5 5.9 128 351-484 170-320 (362)
181 3eie_A Vacuolar protein sortin 97.7 0.00028 9.7E-09 78.2 14.2 155 2-177 54-229 (322)
182 4b4t_I 26S protease regulatory 97.7 0.00017 6E-09 80.0 12.0 145 2-168 219-387 (437)
183 3b9p_A CG5977-PA, isoform A; A 97.7 0.00041 1.4E-08 76.2 15.1 155 2-177 57-234 (297)
184 4b4t_L 26S protease subunit RP 97.7 0.00024 8.1E-09 80.3 13.1 143 2-168 218-386 (437)
185 4b4t_M 26S protease regulatory 97.7 0.00013 4.5E-09 82.4 10.8 143 2-168 218-386 (434)
186 3bos_A Putative DNA replicatio 97.7 1.8E-05 6.1E-10 84.4 3.4 146 2-175 55-216 (242)
187 3rw6_A Nuclear RNA export fact 97.6 3.7E-05 1.3E-09 81.1 5.6 78 375-452 167-257 (267)
188 1io0_A Tropomodulin; LRR prote 97.6 3.3E-05 1.1E-09 77.7 4.5 106 351-456 34-161 (185)
189 2qp9_X Vacuolar protein sortin 97.6 0.0009 3.1E-08 75.0 16.4 155 2-177 87-262 (355)
190 3pfi_A Holliday junction ATP-d 97.6 0.00026 9E-09 79.5 12.0 145 2-175 58-226 (338)
191 2zan_A Vacuolar protein sortin 97.6 0.0006 2E-08 79.0 15.1 156 2-177 170-346 (444)
192 3cf0_A Transitional endoplasmi 97.6 0.00042 1.4E-08 75.9 13.1 148 2-171 52-223 (301)
193 1a5t_A Delta prime, HOLB; zinc 97.5 0.0005 1.7E-08 76.6 13.3 145 2-174 27-203 (334)
194 1jbk_A CLPB protein; beta barr 97.5 6.9E-05 2.3E-09 76.5 5.9 127 2-141 46-194 (195)
195 3pvs_A Replication-associated 97.5 0.00075 2.5E-08 77.7 14.9 151 2-175 53-214 (447)
196 4gt6_A Cell surface protein; l 97.5 0.0044 1.5E-07 71.1 21.4 124 351-481 61-192 (394)
197 3d8b_A Fidgetin-like protein 1 97.5 0.0007 2.4E-08 76.1 14.3 156 2-178 120-297 (357)
198 1l8q_A Chromosomal replication 97.5 0.00019 6.5E-09 79.9 9.5 148 2-170 40-202 (324)
199 3rw6_A Nuclear RNA export fact 97.5 1.9E-05 6.6E-10 83.2 0.8 57 399-456 168-230 (267)
200 4b4t_K 26S protease regulatory 97.5 0.00033 1.1E-08 79.0 10.7 143 2-168 209-378 (428)
201 3vfd_A Spastin; ATPase, microt 97.5 0.001 3.5E-08 76.0 14.6 155 2-177 151-327 (389)
202 1sxj_D Activator 1 41 kDa subu 97.4 0.00027 9.3E-09 80.1 9.6 166 2-174 61-233 (353)
203 1lv7_A FTSH; alpha/beta domain 97.4 0.0016 5.5E-08 69.5 14.4 151 2-174 48-223 (257)
204 3syl_A Protein CBBX; photosynt 97.3 0.00033 1.1E-08 77.6 7.9 127 2-146 70-218 (309)
205 4gt6_A Cell surface protein; l 97.3 0.0026 9E-08 72.9 15.1 291 332-663 65-386 (394)
206 1sxj_C Activator 1 40 kDa subu 97.2 0.001 3.4E-08 74.5 11.2 154 2-171 49-207 (340)
207 3uk6_A RUVB-like 2; hexameric 97.2 0.0016 5.4E-08 74.1 12.4 49 125-174 252-301 (368)
208 3ec2_A DNA replication protein 97.2 0.00019 6.4E-09 72.0 4.0 96 2-114 41-143 (180)
209 2w58_A DNAI, primosome compone 97.2 0.00055 1.9E-08 70.1 7.5 95 2-114 57-159 (202)
210 3u61_B DNA polymerase accessor 97.1 0.00084 2.9E-08 74.7 8.7 154 2-177 51-218 (324)
211 3t15_A Ribulose bisphosphate c 97.1 0.0039 1.3E-07 67.6 13.7 145 2-171 39-221 (293)
212 1sxj_E Activator 1 40 kDa subu 97.1 0.00052 1.8E-08 77.7 7.0 98 77-175 133-236 (354)
213 2ce7_A Cell division protein F 97.1 0.0029 1E-07 72.8 13.1 146 2-169 52-221 (476)
214 3pxg_A Negative regulator of g 96.9 0.0024 8.3E-08 74.5 10.2 125 2-146 204-339 (468)
215 3hu3_A Transitional endoplasmi 96.9 0.0068 2.3E-07 70.5 13.6 153 2-176 241-415 (489)
216 3cf2_A TER ATPase, transitiona 96.8 0.0015 5.1E-08 79.8 8.0 146 2-169 241-407 (806)
217 4h09_A Hypothetical leucine ri 96.8 0.023 8E-07 64.6 17.1 122 351-481 44-168 (379)
218 3io5_A Recombination and repai 96.7 0.0063 2.2E-07 64.5 10.7 84 2-90 31-123 (333)
219 2kjq_A DNAA-related protein; s 96.7 0.00033 1.1E-08 67.0 0.5 37 1-39 38-74 (149)
220 2x8a_A Nuclear valosin-contain 96.6 0.012 4.1E-07 62.9 12.6 125 2-146 47-192 (274)
221 1ixz_A ATP-dependent metallopr 96.6 0.0099 3.4E-07 63.2 11.8 145 2-168 52-220 (254)
222 1qvr_A CLPB protein; coiled co 96.6 0.004 1.4E-07 78.9 9.7 131 2-145 194-345 (854)
223 1iy2_A ATP-dependent metallopr 96.5 0.021 7.1E-07 61.5 13.8 146 2-169 76-245 (278)
224 1ofh_A ATP-dependent HSL prote 96.5 0.0049 1.7E-07 68.1 8.7 33 2-39 53-85 (310)
225 4fcw_A Chaperone protein CLPB; 96.4 0.0087 3E-07 66.0 10.4 82 2-90 50-131 (311)
226 2gno_A DNA polymerase III, gam 96.4 0.0075 2.6E-07 65.4 9.4 124 2-145 21-152 (305)
227 2r62_A Cell division protease 96.4 0.00079 2.7E-08 72.6 1.5 125 2-146 47-197 (268)
228 2p65_A Hypothetical protein PF 96.4 0.0025 8.7E-08 64.1 5.2 24 2-25 46-69 (187)
229 3n70_A Transport activator; si 96.3 0.0015 5.1E-08 62.4 2.8 23 2-24 27-49 (145)
230 3pxi_A Negative regulator of g 96.3 0.013 4.3E-07 73.5 11.9 125 2-146 204-339 (758)
231 1n0w_A DNA repair protein RAD5 96.3 0.021 7.2E-07 60.2 11.6 89 1-90 26-131 (243)
232 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0047 1.6E-07 65.9 6.0 69 2-90 126-194 (331)
233 2dhr_A FTSH; AAA+ protein, hex 96.2 0.024 8.2E-07 65.7 12.2 146 2-169 67-236 (499)
234 1in4_A RUVB, holliday junction 96.2 0.04 1.4E-06 61.0 13.7 47 125-172 173-219 (334)
235 2cvh_A DNA repair and recombin 96.1 0.02 6.8E-07 59.3 10.4 84 1-90 22-117 (220)
236 3hr8_A Protein RECA; alpha and 96.1 0.018 6E-07 63.4 10.0 83 1-90 63-151 (356)
237 1r6b_X CLPA protein; AAA+, N-t 96.0 0.022 7.6E-07 71.4 12.1 131 2-145 210-362 (758)
238 1v5w_A DMC1, meiotic recombina 95.9 0.028 9.5E-07 62.4 10.8 89 1-90 124-231 (343)
239 3m6a_A ATP-dependent protease 95.9 0.012 4.1E-07 69.8 8.0 132 2-145 111-266 (543)
240 2z43_A DNA repair and recombin 95.8 0.033 1.1E-06 61.3 10.9 89 1-90 109-215 (324)
241 4a74_A DNA repair and recombin 95.8 0.014 4.8E-07 61.0 7.3 89 1-90 27-137 (231)
242 3co5_A Putative two-component 95.7 0.00095 3.2E-08 63.6 -1.9 22 2-23 30-51 (143)
243 3pxi_A Negative regulator of g 95.7 0.011 3.9E-07 73.9 7.4 123 2-145 524-675 (758)
244 4h09_A Hypothetical leucine ri 95.7 0.044 1.5E-06 62.3 11.7 123 351-479 215-341 (379)
245 2i1q_A DNA repair and recombin 95.7 0.034 1.2E-06 61.3 10.4 89 1-90 100-216 (322)
246 3lda_A DNA repair protein RAD5 95.7 0.03 1E-06 62.9 9.9 87 1-88 180-283 (400)
247 1xp8_A RECA protein, recombina 95.6 0.036 1.2E-06 61.5 9.9 83 1-90 76-164 (366)
248 2zr9_A Protein RECA, recombina 95.5 0.034 1.1E-06 61.6 9.6 83 1-90 63-151 (349)
249 3cf2_A TER ATPase, transitiona 95.5 0.0069 2.4E-07 74.0 4.3 145 2-168 514-682 (806)
250 1u94_A RECA protein, recombina 95.5 0.037 1.2E-06 61.3 9.4 82 1-89 65-152 (356)
251 3ice_A Transcription terminati 95.3 0.014 4.9E-07 63.4 5.2 85 2-90 177-273 (422)
252 2qgz_A Helicase loader, putati 95.3 0.016 5.6E-07 63.0 5.7 35 2-38 155-190 (308)
253 2c9o_A RUVB-like 1; hexameric 95.2 0.068 2.3E-06 62.1 11.1 47 125-172 359-406 (456)
254 2ehv_A Hypothetical protein PH 95.2 0.01 3.4E-07 63.1 3.7 37 1-39 32-69 (251)
255 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.059 2E-06 56.3 8.7 37 1-39 25-61 (235)
256 1ojl_A Transcriptional regulat 94.9 0.096 3.3E-06 56.9 10.5 37 2-40 28-64 (304)
257 2px0_A Flagellar biosynthesis 94.8 0.054 1.9E-06 58.3 8.1 83 1-86 107-190 (296)
258 1pzn_A RAD51, DNA repair and r 94.7 0.074 2.5E-06 58.9 9.3 89 1-90 133-243 (349)
259 1r6b_X CLPA protein; AAA+, N-t 94.7 0.021 7E-07 71.7 5.3 79 2-90 491-569 (758)
260 2ck3_D ATP synthase subunit be 94.6 0.14 4.8E-06 57.7 10.9 87 2-89 156-264 (482)
261 1fx0_B ATP synthase beta chain 94.5 0.11 3.6E-06 58.9 9.8 87 2-89 168-277 (498)
262 1qhx_A CPT, protein (chloramph 94.2 0.02 6.9E-07 56.8 3.0 24 1-24 5-28 (178)
263 1sky_E F1-ATPase, F1-ATP synth 94.2 0.08 2.7E-06 59.9 8.1 87 2-89 154-256 (473)
264 1ypw_A Transitional endoplasmi 94.2 0.082 2.8E-06 65.9 9.1 125 2-146 241-386 (806)
265 3bh0_A DNAB-like replicative h 94.2 0.18 6E-06 55.1 10.8 49 1-53 70-118 (315)
266 2dr3_A UPF0273 protein PH0284; 94.1 0.11 3.7E-06 54.7 8.6 38 1-40 25-62 (247)
267 3rfe_A Platelet glycoprotein I 94.0 0.066 2.2E-06 49.4 5.7 56 426-484 11-68 (130)
268 3kb2_A SPBC2 prophage-derived 94.0 0.025 8.5E-07 55.8 3.1 24 1-24 3-26 (173)
269 3rfe_A Platelet glycoprotein I 93.9 0.072 2.5E-06 49.1 5.8 32 380-411 33-65 (130)
270 1pgv_A TMD-1, tropomodulin TMD 93.9 0.046 1.6E-06 54.0 4.7 81 376-456 39-136 (197)
271 1qvr_A CLPB protein; coiled co 93.9 0.062 2.1E-06 68.0 7.1 37 2-40 591-627 (854)
272 3sr0_A Adenylate kinase; phosp 93.7 0.05 1.7E-06 54.9 4.8 24 1-24 2-25 (206)
273 1vma_A Cell division protein F 93.7 0.11 3.8E-06 56.0 7.7 85 1-88 106-196 (306)
274 2b8t_A Thymidine kinase; deoxy 93.7 0.023 7.7E-07 58.0 2.1 109 1-116 14-128 (223)
275 1kag_A SKI, shikimate kinase I 93.7 0.035 1.2E-06 54.7 3.5 24 1-24 6-29 (173)
276 3t61_A Gluconokinase; PSI-biol 93.5 0.039 1.3E-06 56.0 3.6 24 1-24 20-43 (202)
277 1j8m_F SRP54, signal recogniti 93.5 0.15 5.2E-06 54.8 8.3 86 1-88 100-190 (297)
278 1jr3_D DNA polymerase III, del 93.4 0.4 1.4E-05 53.2 12.1 151 2-174 21-183 (343)
279 3lw7_A Adenylate kinase relate 93.4 0.033 1.1E-06 55.2 2.8 19 1-19 3-21 (179)
280 3vaa_A Shikimate kinase, SK; s 93.4 0.037 1.3E-06 56.0 3.1 24 1-24 27-50 (199)
281 3trf_A Shikimate kinase, SK; a 93.2 0.041 1.4E-06 55.0 3.1 23 2-24 8-30 (185)
282 3l0o_A Transcription terminati 93.2 0.03 1E-06 60.7 2.2 38 2-40 178-216 (427)
283 3umf_A Adenylate kinase; rossm 93.2 0.077 2.6E-06 53.8 5.1 24 1-24 31-54 (217)
284 1via_A Shikimate kinase; struc 93.2 0.049 1.7E-06 53.7 3.6 24 1-24 6-29 (175)
285 3iij_A Coilin-interacting nucl 93.2 0.05 1.7E-06 54.0 3.6 24 1-24 13-36 (180)
286 1ly1_A Polynucleotide kinase; 93.1 0.039 1.3E-06 54.8 2.8 21 1-21 4-24 (181)
287 3dm5_A SRP54, signal recogniti 93.1 0.17 5.9E-06 57.1 8.2 35 1-37 102-136 (443)
288 2iyv_A Shikimate kinase, SK; t 93.1 0.051 1.7E-06 54.2 3.6 24 1-24 4-27 (184)
289 1ls1_A Signal recognition part 93.0 0.23 7.9E-06 53.4 8.9 85 1-87 100-189 (295)
290 3uie_A Adenylyl-sulfate kinase 92.9 0.048 1.6E-06 55.2 3.1 24 1-24 27-50 (200)
291 1kgd_A CASK, peripheral plasma 92.9 0.047 1.6E-06 54.1 3.0 24 1-24 7-30 (180)
292 1ex7_A Guanylate kinase; subst 92.9 0.055 1.9E-06 53.3 3.3 24 1-24 3-26 (186)
293 2qor_A Guanylate kinase; phosp 92.9 0.055 1.9E-06 55.0 3.5 24 1-24 14-37 (204)
294 1zuh_A Shikimate kinase; alpha 92.9 0.051 1.8E-06 53.1 3.2 24 1-24 9-32 (168)
295 1nks_A Adenylate kinase; therm 92.9 0.049 1.7E-06 54.9 3.1 24 1-24 3-26 (194)
296 1kht_A Adenylate kinase; phosp 92.9 0.049 1.7E-06 54.7 3.1 24 1-24 5-28 (192)
297 1e6c_A Shikimate kinase; phosp 92.7 0.062 2.1E-06 52.9 3.6 24 1-24 4-27 (173)
298 1zp6_A Hypothetical protein AT 92.7 0.045 1.5E-06 55.0 2.6 22 1-22 11-32 (191)
299 3kl4_A SRP54, signal recogniti 92.7 0.19 6.6E-06 56.7 7.9 36 1-38 99-134 (433)
300 2ze6_A Isopentenyl transferase 92.7 0.052 1.8E-06 57.2 3.1 24 1-24 3-26 (253)
301 2rhm_A Putative kinase; P-loop 92.7 0.054 1.9E-06 54.5 3.1 24 1-24 7-30 (193)
302 2grj_A Dephospho-COA kinase; T 92.6 0.055 1.9E-06 53.9 3.0 23 1-23 14-36 (192)
303 4a1f_A DNAB helicase, replicat 92.6 0.31 1.1E-05 53.1 9.1 48 1-52 48-95 (338)
304 3tqc_A Pantothenate kinase; bi 92.5 0.19 6.5E-06 54.4 7.2 39 1-39 94-132 (321)
305 1y63_A LMAJ004144AAA protein; 92.5 0.058 2E-06 53.7 3.0 22 1-22 12-33 (184)
306 4eun_A Thermoresistant glucoki 92.5 0.059 2E-06 54.5 3.1 23 1-23 31-53 (200)
307 3cmu_A Protein RECA, recombina 92.4 0.2 7E-06 67.0 8.6 81 1-88 1429-1515(2050)
308 1knq_A Gluconate kinase; ALFA/ 92.4 0.062 2.1E-06 53.0 3.0 23 1-23 10-32 (175)
309 1pgv_A TMD-1, tropomodulin TMD 92.3 0.1 3.4E-06 51.7 4.4 104 353-456 41-167 (197)
310 3a00_A Guanylate kinase, GMP k 92.3 0.07 2.4E-06 53.2 3.4 24 1-24 3-26 (186)
311 1xjc_A MOBB protein homolog; s 92.3 0.088 3E-06 50.7 3.8 25 1-25 6-30 (169)
312 2jaq_A Deoxyguanosine kinase; 92.2 0.064 2.2E-06 54.5 3.1 24 1-24 2-25 (205)
313 2xxa_A Signal recognition part 92.2 0.38 1.3E-05 54.7 9.6 38 1-39 102-139 (433)
314 2ffh_A Protein (FFH); SRP54, s 92.2 0.37 1.2E-05 54.4 9.4 55 1-57 100-155 (425)
315 3tau_A Guanylate kinase, GMP k 92.1 0.063 2.1E-06 54.7 2.8 24 1-24 10-33 (208)
316 2bwj_A Adenylate kinase 5; pho 92.1 0.071 2.4E-06 53.9 3.1 24 1-24 14-37 (199)
317 2c95_A Adenylate kinase 1; tra 92.1 0.07 2.4E-06 53.8 3.1 24 1-24 11-34 (196)
318 3cm0_A Adenylate kinase; ATP-b 92.0 0.072 2.5E-06 53.2 3.1 24 1-24 6-29 (186)
319 1cke_A CK, MSSA, protein (cyti 92.0 0.07 2.4E-06 55.3 3.1 24 1-24 7-30 (227)
320 3vr4_D V-type sodium ATPase su 92.0 0.25 8.4E-06 55.4 7.5 87 2-88 154-258 (465)
321 1g5t_A COB(I)alamin adenosyltr 92.0 0.16 5.6E-06 49.9 5.4 110 2-115 31-164 (196)
322 1tev_A UMP-CMP kinase; ploop, 92.0 0.073 2.5E-06 53.6 3.1 24 1-24 5-28 (196)
323 2pt5_A Shikimate kinase, SK; a 92.0 0.087 3E-06 51.5 3.5 24 1-24 2-25 (168)
324 3ney_A 55 kDa erythrocyte memb 91.9 0.072 2.5E-06 52.9 2.8 24 1-24 21-44 (197)
325 2cdn_A Adenylate kinase; phosp 91.9 0.076 2.6E-06 53.8 3.1 24 1-24 22-45 (201)
326 3tr0_A Guanylate kinase, GMP k 91.9 0.07 2.4E-06 54.3 2.8 23 1-23 9-31 (205)
327 2bdt_A BH3686; alpha-beta prot 91.8 0.073 2.5E-06 53.3 2.8 21 1-21 4-24 (189)
328 1lvg_A Guanylate kinase, GMP k 91.8 0.095 3.3E-06 52.8 3.7 24 1-24 6-29 (198)
329 2yvu_A Probable adenylyl-sulfa 91.8 0.081 2.8E-06 52.8 3.1 25 1-25 15-39 (186)
330 3c8u_A Fructokinase; YP_612366 91.8 0.069 2.4E-06 54.4 2.6 37 1-39 24-60 (208)
331 2if2_A Dephospho-COA kinase; a 91.7 0.074 2.5E-06 54.1 2.8 21 1-21 3-23 (204)
332 3aez_A Pantothenate kinase; tr 91.7 0.2 6.9E-06 54.3 6.3 39 1-39 92-130 (312)
333 2plr_A DTMP kinase, probable t 91.7 0.083 2.8E-06 54.1 3.2 25 1-25 6-30 (213)
334 2f1r_A Molybdopterin-guanine d 91.7 0.078 2.7E-06 51.6 2.7 36 1-36 4-39 (171)
335 3fb4_A Adenylate kinase; psych 91.7 0.093 3.2E-06 53.9 3.5 23 2-24 3-25 (216)
336 2vli_A Antibiotic resistance p 91.6 0.059 2E-06 53.6 1.9 24 1-24 7-30 (183)
337 2pbr_A DTMP kinase, thymidylat 91.6 0.086 2.9E-06 53.1 3.1 24 1-24 2-25 (195)
338 1qf9_A UMP/CMP kinase, protein 91.5 0.088 3E-06 52.9 3.1 24 1-24 8-31 (194)
339 1ye8_A Protein THEP1, hypothet 91.5 0.11 3.7E-06 51.1 3.6 23 2-24 3-25 (178)
340 3mfy_A V-type ATP synthase alp 91.5 0.26 9E-06 56.2 7.0 45 2-50 230-275 (588)
341 1jjv_A Dephospho-COA kinase; P 91.5 0.077 2.6E-06 54.0 2.6 21 1-21 4-24 (206)
342 2c61_A A-type ATP synthase non 91.5 0.29 1E-05 55.2 7.4 87 2-88 155-259 (469)
343 3asz_A Uridine kinase; cytidin 91.4 0.094 3.2E-06 53.6 3.2 24 1-24 8-31 (211)
344 1ypw_A Transitional endoplasmi 91.4 0.016 5.5E-07 72.3 -3.1 125 2-146 514-662 (806)
345 3a4m_A L-seryl-tRNA(SEC) kinas 91.4 0.087 3E-06 55.8 3.0 24 1-24 6-29 (260)
346 2zts_A Putative uncharacterize 91.4 0.43 1.5E-05 50.1 8.5 39 1-40 32-70 (251)
347 2j41_A Guanylate kinase; GMP, 91.4 0.085 2.9E-06 53.7 2.8 23 1-23 8-30 (207)
348 1ukz_A Uridylate kinase; trans 91.4 0.091 3.1E-06 53.3 3.0 24 1-24 17-40 (203)
349 3dl0_A Adenylate kinase; phosp 91.3 0.096 3.3E-06 53.8 3.2 23 2-24 3-25 (216)
350 2wwf_A Thymidilate kinase, put 91.3 0.096 3.3E-06 53.6 3.1 24 1-24 12-35 (212)
351 1zak_A Adenylate kinase; ATP:A 91.3 0.11 3.8E-06 53.6 3.6 24 1-24 7-30 (222)
352 2z0h_A DTMP kinase, thymidylat 91.2 0.1 3.5E-06 52.6 3.1 24 1-24 2-25 (197)
353 1uj2_A Uridine-cytidine kinase 91.1 0.097 3.3E-06 55.2 3.0 24 1-24 24-47 (252)
354 3gmt_A Adenylate kinase; ssgci 91.1 0.38 1.3E-05 48.9 7.1 23 2-24 11-33 (230)
355 3jvv_A Twitching mobility prot 91.1 0.024 8.2E-07 62.7 -1.9 107 1-115 125-232 (356)
356 1nn5_A Similar to deoxythymidy 91.1 0.1 3.6E-06 53.5 3.1 24 1-24 11-34 (215)
357 4e22_A Cytidylate kinase; P-lo 91.0 0.099 3.4E-06 55.0 3.0 24 1-24 29-52 (252)
358 2bbw_A Adenylate kinase 4, AK4 91.0 0.1 3.5E-06 54.8 3.1 24 1-24 29-52 (246)
359 3oaa_A ATP synthase subunit al 91.0 0.71 2.4E-05 52.2 9.8 85 2-89 165-265 (513)
360 3r20_A Cytidylate kinase; stru 91.0 0.11 3.8E-06 53.2 3.1 24 1-24 11-34 (233)
361 1uf9_A TT1252 protein; P-loop, 90.9 0.098 3.4E-06 53.0 2.8 22 1-22 10-31 (203)
362 1odf_A YGR205W, hypothetical 3 90.9 0.11 3.7E-06 55.8 3.1 25 1-25 33-57 (290)
363 3nwj_A ATSK2; P loop, shikimat 90.9 0.13 4.4E-06 53.6 3.6 24 1-24 50-73 (250)
364 1z6g_A Guanylate kinase; struc 90.9 0.12 4.1E-06 53.0 3.3 23 1-23 25-47 (218)
365 1zd8_A GTP:AMP phosphotransfer 90.9 0.1 3.6E-06 54.0 3.0 24 1-24 9-32 (227)
366 4gp7_A Metallophosphoesterase; 90.9 0.084 2.9E-06 51.7 2.1 19 1-19 11-29 (171)
367 2qt1_A Nicotinamide riboside k 90.9 0.096 3.3E-06 53.3 2.6 23 1-23 23-45 (207)
368 3fwy_A Light-independent proto 90.8 0.19 6.6E-06 54.4 5.0 37 1-39 50-86 (314)
369 2i3b_A HCR-ntpase, human cance 90.8 0.14 4.8E-06 50.8 3.6 24 1-24 3-26 (189)
370 1aky_A Adenylate kinase; ATP:A 90.8 0.13 4.3E-06 53.0 3.5 24 1-24 6-29 (220)
371 3cmw_A Protein RECA, recombina 90.8 0.39 1.3E-05 63.5 8.7 83 1-90 734-822 (1706)
372 1rz3_A Hypothetical protein rb 90.7 0.12 4E-06 52.3 3.1 24 1-24 24-47 (201)
373 1tue_A Replication protein E1; 90.7 0.12 4E-06 51.0 2.8 23 2-24 61-83 (212)
374 1np6_A Molybdopterin-guanine d 90.7 0.19 6.4E-06 49.0 4.3 24 1-24 8-31 (174)
375 3ake_A Cytidylate kinase; CMP 90.6 0.12 4.1E-06 52.6 3.1 24 1-24 4-27 (208)
376 3gqb_B V-type ATP synthase bet 90.6 0.39 1.3E-05 53.7 7.3 87 2-88 150-261 (464)
377 1gvn_B Zeta; postsegregational 90.6 0.097 3.3E-06 56.2 2.5 23 1-23 35-57 (287)
378 2jeo_A Uridine-cytidine kinase 90.6 0.11 3.8E-06 54.5 2.8 23 1-23 27-49 (245)
379 1gtv_A TMK, thymidylate kinase 90.6 0.076 2.6E-06 54.5 1.5 25 1-25 2-26 (214)
380 3tlx_A Adenylate kinase 2; str 90.6 0.12 4.2E-06 54.0 3.1 24 1-24 31-54 (243)
381 1htw_A HI0065; nucleotide-bind 90.6 0.12 4.2E-06 49.4 2.8 23 1-23 35-57 (158)
382 3e70_C DPA, signal recognition 90.5 0.92 3.2E-05 49.3 10.1 54 1-56 131-185 (328)
383 3d3q_A TRNA delta(2)-isopenten 90.5 0.12 4.1E-06 56.0 3.0 24 1-24 9-32 (340)
384 1e4v_A Adenylate kinase; trans 90.4 0.15 5E-06 52.2 3.5 23 2-24 3-25 (214)
385 3cmw_A Protein RECA, recombina 90.4 0.45 1.5E-05 63.0 8.6 83 1-90 1433-1521(1706)
386 3vr4_A V-type sodium ATPase ca 90.3 0.62 2.1E-05 53.5 8.6 83 2-88 235-339 (600)
387 2pez_A Bifunctional 3'-phospho 90.3 0.14 4.7E-06 50.7 3.1 24 1-24 7-30 (179)
388 1q57_A DNA primase/helicase; d 90.3 0.67 2.3E-05 54.5 9.5 54 1-57 244-298 (503)
389 2r8r_A Sensor protein; KDPD, P 90.3 0.18 6.1E-06 50.8 3.8 39 2-42 9-47 (228)
390 1m7g_A Adenylylsulfate kinase; 90.2 0.14 4.9E-06 52.2 3.1 24 1-24 27-50 (211)
391 2q6t_A DNAB replication FORK h 90.2 0.85 2.9E-05 52.5 10.1 48 1-51 202-249 (444)
392 4akg_A Glutathione S-transfera 90.1 0.88 3E-05 63.5 11.5 134 2-145 1270-1431(2695)
393 2v54_A DTMP kinase, thymidylat 90.1 0.13 4.5E-06 52.1 2.8 23 1-23 6-28 (204)
394 1znw_A Guanylate kinase, GMP k 90.0 0.13 4.4E-06 52.3 2.7 24 1-24 22-45 (207)
395 3be4_A Adenylate kinase; malar 90.0 0.16 5.5E-06 52.0 3.4 23 2-24 8-30 (217)
396 1s96_A Guanylate kinase, GMP k 90.0 0.13 4.6E-06 52.4 2.8 24 1-24 18-41 (219)
397 2xb4_A Adenylate kinase; ATP-b 90.0 0.16 5.6E-06 52.2 3.5 23 2-24 3-25 (223)
398 2j37_W Signal recognition part 90.0 0.77 2.6E-05 53.1 9.3 35 1-37 103-137 (504)
399 2r6a_A DNAB helicase, replicat 90.0 0.62 2.1E-05 53.8 8.7 47 1-50 205-251 (454)
400 1vht_A Dephospho-COA kinase; s 89.9 0.14 4.7E-06 52.7 2.8 21 1-21 6-26 (218)
401 1rj9_A FTSY, signal recognitio 89.8 0.22 7.4E-06 53.7 4.3 25 1-25 104-128 (304)
402 2ck3_A ATP synthase subunit al 89.7 0.61 2.1E-05 53.0 8.0 88 2-89 165-273 (510)
403 3cmu_A Protein RECA, recombina 89.6 0.56 1.9E-05 63.0 8.6 83 1-90 385-473 (2050)
404 3crm_A TRNA delta(2)-isopenten 89.5 0.16 5.5E-06 54.7 3.0 24 1-24 7-30 (323)
405 3iqw_A Tail-anchored protein t 89.5 0.53 1.8E-05 51.5 7.1 42 1-44 18-59 (334)
406 2f6r_A COA synthase, bifunctio 89.5 0.14 4.9E-06 54.7 2.6 20 1-20 77-96 (281)
407 1ak2_A Adenylate kinase isoenz 89.4 0.19 6.6E-06 52.1 3.5 23 2-24 19-41 (233)
408 3kjh_A CO dehydrogenase/acetyl 89.4 0.35 1.2E-05 51.0 5.6 42 2-45 3-44 (254)
409 1cr0_A DNA primase/helicase; R 89.4 0.46 1.6E-05 51.4 6.7 47 1-51 37-84 (296)
410 1sq5_A Pantothenate kinase; P- 89.3 0.26 9E-06 53.5 4.6 40 1-40 82-121 (308)
411 3exa_A TRNA delta(2)-isopenten 89.3 0.15 5E-06 54.2 2.4 24 1-24 5-28 (322)
412 2yhs_A FTSY, cell division pro 89.2 1.1 3.6E-05 51.2 9.4 25 1-25 295-319 (503)
413 2qe7_A ATP synthase subunit al 89.1 0.97 3.3E-05 51.3 9.0 84 2-89 165-265 (502)
414 1a7j_A Phosphoribulokinase; tr 89.1 0.097 3.3E-06 56.2 0.9 39 1-41 7-45 (290)
415 2r9v_A ATP synthase subunit al 89.0 0.58 2E-05 53.1 7.1 84 2-89 178-278 (515)
416 2p5t_B PEZT; postsegregational 89.0 0.13 4.4E-06 54.2 1.8 24 1-24 34-57 (253)
417 3lv8_A DTMP kinase, thymidylat 88.8 0.48 1.7E-05 48.7 5.9 34 1-35 29-62 (236)
418 1zu4_A FTSY; GTPase, signal re 88.8 0.29 1E-05 53.1 4.5 36 1-38 107-142 (320)
419 3b9q_A Chloroplast SRP recepto 88.8 0.27 9.2E-06 53.0 4.1 25 1-25 102-126 (302)
420 3bgw_A DNAB-like replicative h 88.7 0.91 3.1E-05 52.0 8.7 38 1-40 199-236 (444)
421 3foz_A TRNA delta(2)-isopenten 88.7 0.2 6.9E-06 53.2 3.0 24 1-24 12-35 (316)
422 3lnc_A Guanylate kinase, GMP k 88.7 0.13 4.4E-06 53.4 1.5 23 1-23 29-52 (231)
423 2bjv_A PSP operon transcriptio 88.7 0.29 9.7E-06 52.1 4.3 37 2-40 32-68 (265)
424 3a8t_A Adenylate isopentenyltr 88.6 0.15 5.2E-06 55.0 2.0 23 1-23 42-64 (339)
425 3zvl_A Bifunctional polynucleo 88.4 0.23 7.9E-06 56.6 3.5 23 1-23 260-282 (416)
426 2qmh_A HPR kinase/phosphorylas 88.3 0.17 5.8E-06 49.6 1.9 23 2-24 37-59 (205)
427 4tmk_A Protein (thymidylate ki 88.2 0.57 1.9E-05 47.4 5.9 51 1-52 5-55 (213)
428 3end_A Light-independent proto 88.1 0.39 1.3E-05 52.3 5.0 40 1-42 43-82 (307)
429 1cp2_A CP2, nitrogenase iron p 88.1 0.42 1.4E-05 50.9 5.2 39 1-41 3-41 (269)
430 2hf9_A Probable hydrogenase ni 88.0 0.39 1.3E-05 49.5 4.7 24 1-24 40-63 (226)
431 1nlf_A Regulatory protein REPA 87.8 0.44 1.5E-05 51.0 5.0 40 1-40 32-79 (279)
432 1ltq_A Polynucleotide kinase; 87.8 0.24 8.2E-06 53.9 3.0 22 1-22 4-25 (301)
433 4eaq_A DTMP kinase, thymidylat 87.7 0.27 9.3E-06 50.7 3.2 25 1-25 28-52 (229)
434 3tqf_A HPR(Ser) kinase; transf 87.6 0.27 9.3E-06 46.8 2.8 21 2-22 19-39 (181)
435 1sgw_A Putative ABC transporte 87.6 0.24 8.2E-06 50.2 2.6 23 1-23 37-59 (214)
436 3fdi_A Uncharacterized protein 87.6 0.33 1.1E-05 48.7 3.7 24 1-24 8-31 (201)
437 2eyu_A Twitching motility prot 87.5 0.37 1.3E-05 50.7 4.1 24 1-24 27-50 (261)
438 2og2_A Putative signal recogni 87.5 0.36 1.2E-05 53.1 4.1 25 1-25 159-183 (359)
439 1oix_A RAS-related protein RAB 87.4 0.29 9.9E-06 48.9 3.1 23 2-24 32-54 (191)
440 3tif_A Uncharacterized ABC tra 87.4 0.21 7.2E-06 51.7 2.1 33 1-36 33-65 (235)
441 2onk_A Molybdate/tungstate ABC 87.4 0.25 8.4E-06 51.2 2.6 23 1-23 26-48 (240)
442 3eph_A TRNA isopentenyltransfe 87.3 0.27 9.3E-06 54.4 3.0 24 1-24 4-27 (409)
443 2afh_E Nitrogenase iron protei 87.2 0.49 1.7E-05 51.0 5.0 39 1-41 4-42 (289)
444 3hjn_A DTMP kinase, thymidylat 87.1 1.5 5.1E-05 43.7 8.2 49 2-52 3-51 (197)
445 3cwq_A Para family chromosome 87.1 0.61 2.1E-05 47.2 5.4 42 1-45 2-44 (209)
446 3gqb_A V-type ATP synthase alp 87.1 0.62 2.1E-05 53.2 5.8 44 2-49 224-268 (578)
447 2pcj_A ABC transporter, lipopr 87.1 0.22 7.6E-06 51.1 2.1 23 1-23 32-54 (224)
448 1yrb_A ATP(GTP)binding protein 87.0 0.39 1.3E-05 50.9 4.0 35 1-38 16-50 (262)
449 2orw_A Thymidine kinase; TMTK, 86.9 0.34 1.2E-05 47.8 3.3 109 1-115 5-114 (184)
450 3b85_A Phosphate starvation-in 86.9 0.2 6.8E-06 50.6 1.6 22 1-22 24-45 (208)
451 2wji_A Ferrous iron transport 86.8 0.32 1.1E-05 47.1 3.0 21 2-22 6-26 (165)
452 1q3t_A Cytidylate kinase; nucl 86.8 0.32 1.1E-05 50.6 3.1 24 1-24 18-41 (236)
453 2f9l_A RAB11B, member RAS onco 86.7 0.34 1.2E-05 48.8 3.2 22 2-23 8-29 (199)
454 2h92_A Cytidylate kinase; ross 86.6 0.37 1.3E-05 49.4 3.5 24 1-24 5-28 (219)
455 2zej_A Dardarin, leucine-rich 86.5 0.28 9.7E-06 48.6 2.5 20 2-21 5-24 (184)
456 2cbz_A Multidrug resistance-as 86.4 0.26 8.8E-06 51.1 2.1 24 1-24 33-56 (237)
457 3gfo_A Cobalt import ATP-bindi 86.3 0.26 8.8E-06 52.2 2.1 23 1-23 36-58 (275)
458 4edh_A DTMP kinase, thymidylat 86.3 0.89 3E-05 46.0 6.0 25 1-25 8-32 (213)
459 2wsm_A Hydrogenase expression/ 86.2 0.34 1.2E-05 49.8 2.9 24 1-24 32-55 (221)
460 1b0u_A Histidine permease; ABC 86.2 0.26 9.1E-06 51.9 2.1 23 1-23 34-56 (262)
461 2d2e_A SUFC protein; ABC-ATPas 86.1 0.32 1.1E-05 50.9 2.7 22 1-22 31-52 (250)
462 2dyk_A GTP-binding protein; GT 86.1 0.39 1.3E-05 46.2 3.2 22 2-23 4-25 (161)
463 3hws_A ATP-dependent CLP prote 85.9 0.38 1.3E-05 53.9 3.3 23 2-24 54-76 (363)
464 2ga8_A Hypothetical 39.9 kDa p 85.9 0.42 1.4E-05 51.9 3.5 23 2-24 27-49 (359)
465 2zu0_C Probable ATP-dependent 85.8 0.33 1.1E-05 51.3 2.6 22 1-22 48-69 (267)
466 2olj_A Amino acid ABC transpor 85.8 0.29 9.8E-06 51.5 2.1 23 1-23 52-74 (263)
467 1ji0_A ABC transporter; ATP bi 85.8 0.29 9.9E-06 50.8 2.1 23 1-23 34-56 (240)
468 4g1u_C Hemin import ATP-bindin 85.7 0.29 9.8E-06 51.7 2.1 33 1-36 39-71 (266)
469 2v9p_A Replication protein E1; 85.7 0.35 1.2E-05 51.8 2.8 23 1-23 128-150 (305)
470 2pze_A Cystic fibrosis transme 85.7 0.3 1E-05 50.3 2.1 24 1-24 36-59 (229)
471 2ff7_A Alpha-hemolysin translo 85.6 0.3 1E-05 51.0 2.1 24 1-24 37-60 (247)
472 3ld9_A DTMP kinase, thymidylat 85.6 0.73 2.5E-05 46.8 4.9 25 1-25 23-47 (223)
473 1um8_A ATP-dependent CLP prote 85.6 0.4 1.4E-05 54.1 3.3 23 2-24 75-97 (376)
474 1g6h_A High-affinity branched- 85.5 0.3 1E-05 51.3 2.1 24 1-24 35-58 (257)
475 2ce2_X GTPase HRAS; signaling 85.5 0.43 1.5E-05 46.1 3.2 22 2-23 6-27 (166)
476 4dzz_A Plasmid partitioning pr 85.4 0.62 2.1E-05 47.1 4.5 43 1-45 3-46 (206)
477 1tf7_A KAIC; homohexamer, hexa 85.4 1.9 6.7E-05 50.8 9.3 37 1-39 283-319 (525)
478 1vpl_A ABC transporter, ATP-bi 85.3 0.31 1.1E-05 51.0 2.1 23 1-23 43-65 (256)
479 1z2a_A RAS-related protein RAB 85.2 0.45 1.5E-05 46.1 3.2 22 2-23 8-29 (168)
480 1mv5_A LMRA, multidrug resista 85.2 0.32 1.1E-05 50.7 2.1 23 1-23 30-52 (243)
481 2qi9_C Vitamin B12 import ATP- 85.0 0.33 1.1E-05 50.6 2.1 24 1-24 28-51 (249)
482 2ghi_A Transport protein; mult 85.0 0.33 1.1E-05 51.0 2.1 23 1-23 48-70 (260)
483 1fx0_A ATP synthase alpha chai 84.9 0.9 3.1E-05 51.6 5.7 83 2-88 166-265 (507)
484 1r8s_A ADP-ribosylation factor 84.8 0.51 1.8E-05 45.5 3.4 22 2-23 3-24 (164)
485 2ixe_A Antigen peptide transpo 84.8 0.34 1.2E-05 51.3 2.1 24 1-24 47-70 (271)
486 3con_A GTPase NRAS; structural 84.8 0.48 1.6E-05 47.2 3.2 22 2-23 24-45 (190)
487 3ihw_A Centg3; RAS, centaurin, 84.7 0.48 1.7E-05 46.9 3.2 22 2-23 23-44 (184)
488 3io3_A DEHA2D07832P; chaperone 84.7 0.82 2.8E-05 50.2 5.2 42 1-44 20-63 (348)
489 2wjg_A FEOB, ferrous iron tran 84.6 0.47 1.6E-05 47.1 3.0 21 2-22 10-30 (188)
490 2nq2_C Hypothetical ABC transp 84.6 0.35 1.2E-05 50.6 2.1 24 1-24 33-56 (253)
491 2ihy_A ABC transporter, ATP-bi 84.5 0.36 1.2E-05 51.3 2.1 24 1-24 49-72 (279)
492 1m7b_A RND3/RHOE small GTP-bin 84.5 0.5 1.7E-05 46.7 3.2 22 2-23 10-31 (184)
493 2ged_A SR-beta, signal recogni 84.4 0.51 1.7E-05 47.1 3.2 22 2-23 51-72 (193)
494 2yz2_A Putative ABC transporte 84.4 0.37 1.2E-05 51.0 2.1 23 1-23 35-57 (266)
495 2v3c_C SRP54, signal recogniti 84.3 0.4 1.4E-05 54.5 2.5 36 1-38 101-136 (432)
496 2r44_A Uncharacterized protein 84.3 0.46 1.6E-05 52.4 3.1 23 2-24 49-71 (331)
497 2nzj_A GTP-binding protein REM 84.2 0.5 1.7E-05 46.1 3.0 21 2-22 7-27 (175)
498 2gj8_A MNME, tRNA modification 84.2 0.51 1.7E-05 46.1 3.0 21 2-22 7-27 (172)
499 1u8z_A RAS-related protein RAL 84.1 0.54 1.9E-05 45.4 3.2 22 2-23 7-28 (168)
500 2ocp_A DGK, deoxyguanosine kin 84.1 0.54 1.8E-05 49.0 3.3 24 1-24 4-27 (241)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-42 Score=436.73 Aligned_cols=295 Identities=14% Similarity=0.065 Sum_probs=144.4
Q ss_pred cCCCccceecccCCCceeeecCCCCCCccccccEEEEecCCCccccccchHHhhcccccEEEEecCCchHHHhhccCCcc
Q 042307 892 ALPSLEEMVLSNMGNLKTIWHSQFAGESFCKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGACGSLQEIFDLQELNS 971 (1314)
Q Consensus 892 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 971 (1314)
.+++|+.|++++|.-...++..... +++|+.|++.+|. ++..+|..+ ..+++|++|++++|.....+|.
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~---l~~L~~L~L~~N~-l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~------ 508 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMY---VKTLETLILDFND-LTGEIPSGL-SNCTNLNWISLSNNRLTGEIPK------ 508 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGG---CTTCCEEECCSSC-CCSCCCGGG-GGCTTCCEEECCSSCCCSCCCG------
T ss_pred cCCCCCEEECCCCcccCcCCHHHcC---CCCceEEEecCCc-ccCcCCHHH-hcCCCCCEEEccCCccCCcCCh------
Confidence 4455555555554332222221111 3556666665554 333344433 5667777777777665545544
Q ss_pred cccccccccccceeeecccCccceecccCCCcceecCcccEEEEecCCCcccccchhHHhhhccccEEeEeecccceeEe
Q 042307 972 EETHSGAVSRLGKLHVFRLPKLTKIWNKDPRGNLIFQNLVLVRIFECQRLKSVFPTSVAKSLLQLERLSINNCESVEEIV 1051 (1314)
Q Consensus 972 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 1051 (1314)
+++.+++|+.|++++|.....+ |..+..+++|+.|++++| .++...|..+ ..+..+..+.+.....+..+.
T Consensus 509 ---~~~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~Ls~N-~l~g~ip~~~-~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 509 ---WIGRLENLAILKLSNNSFSGNI----PAELGDCRSLIWLDLNTN-LFNGTIPAAM-FKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp ---GGGGCTTCCEEECCSSCCEEEC----CGGGGGCTTCCEEECCSS-EEESBCCGGG-GTTTTCBCCSTTCSCEEEEEE
T ss_pred ---HHhcCCCCCEEECCCCcccCcC----CHHHcCCCCCCEEECCCC-ccCCcCChHH-hcccchhhhhccccccccccc
Confidence 4455666777777776544344 666667777777777663 4444456555 333334333333222111111
Q ss_pred ccccccc--CCcceEeccccCceecccCCCCceeeCCCccccCCCCceEEeceeeeccccceeccccccchhHHhhh---
Q 042307 1052 ANEGRAD--EATTKFIFPSSTFLRLRDLPCLTTFYSGMHTLEWPELKKLEIDNVQVLSNLEELTLSEHNFTIWQQAQ--- 1126 (1314)
Q Consensus 1052 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~~~~l~~L~~L~l~~~~~~~~~~~~--- 1126 (1314)
....... .......+..+... ....++.+..++++.+.+.|.+|..
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 580 NDGMKKECHGAGNLLEFQGIRSE-----------------------------QLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp CCSCCTTCCSSEEEEECTTCCGG-----------------------------GGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred cccccccccccccccccccccch-----------------------------hhhccccccccccccceecccCchhhhc
Confidence 0000000 00000000000000 0122334444444555554444443
Q ss_pred cccceeee-eecCCCchhhhhhhhcCCCCcEEEEeccCCcccccCCccchhhhhhhhcceeeccCcccccccccCCCCCc
Q 042307 1127 FHKLKVLH-VIFDGSAFFQVGLLQNIPNLEKLLLSNCPCGKIFSCGEVEEHAERVARIKSLKLNKLWGLEEHLWRPDSNL 1205 (1314)
Q Consensus 1127 ~~~L~~L~-~~~~~~~~~p~~~l~~l~~L~~L~l~~c~~~~~~~~~~~g~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 1205 (1314)
+++|+.|+ ++|...+.+| ..++++++|+.|++++|.+...+|.. ...+++|+.|+++++ .+.+..+..
T Consensus 631 l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~-----l~~L~~L~~LdLs~N-----~l~g~ip~~ 699 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDE-----VGDLRGLNILDLSSN-----KLDGRIPQA 699 (768)
T ss_dssp SBCCCEEECCSSCCBSCCC-GGGGGCTTCCEEECCSSCCCSCCCGG-----GGGCTTCCEEECCSS-----CCEECCCGG
T ss_pred cccccEEECcCCcccccCC-HHHhccccCCEEeCcCCccCCCCChH-----HhCCCCCCEEECCCC-----cccCcCChH
Confidence 23344444 3444445555 44566666666666666655554443 223455555555553 233333444
Q ss_pred hhhhhhheeeeeccccccccccCCCcccccCcceEEecccCCc
Q 042307 1206 NSFLQTLEILEVKKCWDSLINLLPSSASFRNLTVLKVCHCWLL 1248 (1314)
Q Consensus 1206 ~~~l~~L~~L~l~~c~~~l~~l~~~~~~l~~L~~L~i~~c~~l 1248 (1314)
...+++|+.|++++| .++..+|...+|.++....+.++|.|
T Consensus 700 l~~l~~L~~L~ls~N--~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 700 MSALTMLTEIDLSNN--NLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp GGGCCCCSEEECCSS--EEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred HhCCCCCCEEECcCC--cccccCCCchhhccCCHHHhcCCchh
Confidence 556677777777777 67666665566666666666666655
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-38 Score=403.06 Aligned_cols=629 Identities=16% Similarity=0.074 Sum_probs=334.3
Q ss_pred CCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCc--hhhhCCCcccEEEecCCcCC-CCCccc-ccCccCcE
Q 042307 331 KNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPD--NFFTRLTELRVLDFTDMHLL-SLPSSL-HLLVNLRT 405 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~--~~f~~l~~L~~L~Ls~n~~~-~lp~~~-~~l~~L~~ 405 (1314)
+.++.++++.+.+..+|..+ .+++|++|++++|.+.+.+|. . |+++++|++|+|++|.+. .+|..+ .++++|++
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG-GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH-HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 34444444444443333333 445555555555544433433 2 245555555555555444 223332 44555555
Q ss_pred EEcCCCcCCCc--cc---cCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCC
Q 042307 406 LCLDNGVLGDV--AV---IGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGD 480 (1314)
Q Consensus 406 L~L~~~~~~~~--~~---~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~ 480 (1314)
|++++|.+... .. ++++++|++|++++|.+..... ++.+++|++|++++|.....+|. ++++++|++|++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISG 232 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcC
Confidence 55555554432 11 4455555555555554442211 24455555555555422222222 45555555555555
Q ss_pred CccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEc----cccCCCCC-CccceEEE
Q 042307 481 TFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIG----DEWNWPDS-YENQRILK 555 (1314)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~----~~~~~~~~-~~~l~~l~ 555 (1314)
|.+. +..+..+.++++|++|++++|.+..........+|+.+.+..+ ....+... ..+++.++
T Consensus 233 n~l~------------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 233 NKLS------------GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp SCCC------------SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CcCC------------CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 5443 2333444555555555555544432222223334444433222 11222222 36677777
Q ss_pred eecCCccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCC-ccceec
Q 042307 556 LKLNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFP-LLESLS 634 (1314)
Q Consensus 556 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~-~L~~L~ 634 (1314)
++.+......+..++.+++|++|+++++.....++.. ....+++|++|++++|.....++. ....++ +|+.|+
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-~l~~l~~L~~L~Ls~n~l~~~~p~-----~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-TLLKMRGLKVLDLSFNEFSGELPE-----SLTNLSASLLTLD 374 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-HHTTCTTCCEEECCSSEEEECCCT-----THHHHTTTCSEEE
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-HHhcCCCCCEEeCcCCccCccccH-----HHHhhhcCCcEEE
Confidence 7777776666677777778888887776544333322 014577788888877754322221 122344 677777
Q ss_pred ccCccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccc
Q 042307 635 LSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDK 714 (1314)
Q Consensus 635 l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 714 (1314)
++++.--..+... .....+++|++|++++|.....+| ..+..+++|++|++++|.....++ ..+
T Consensus 375 Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p-------------~~l 438 (768)
T 3rgz_A 375 LSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIP--PTLSNCSELVSLHLSFNYLSGTIP-------------SSL 438 (768)
T ss_dssp CCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEECC--GGGGGCTTCCEEECCSSEEESCCC-------------GGG
T ss_pred ccCCCcCCCcChh-hhhcccCCccEEECCCCccccccC--HHHhcCCCCCEEECcCCcccCccc-------------HHH
Confidence 7775322111111 111125677777777764333333 345667777777777765333322 123
Q ss_pred eeccccceeeccCCCccccccc-ccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHHHH
Q 042307 715 IEFSQLRKLTLKSLPQLRSFCS-VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRS 793 (1314)
Q Consensus 715 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 793 (1314)
..+++|+.|++++|.....++. +..+++|+.|++++|.+. +..|..+..+++|+.|++++|. +.... +.++..
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~L~~N~-l~~~~-p~~~~~ 512 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT----GEIPSGLSNCTNLNWISLSNNR-LTGEI-PKWIGR 512 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSC-CCSCC-CGGGGG
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc----CcCCHHHhcCCCCCEEEccCCc-cCCcC-ChHHhc
Confidence 4567777777777765444443 455677777777777665 2345556667777777777753 44322 244667
Q ss_pred hhcccEeeeccccccccccccCccccccccccccchhhhHhhhccccccccccCCCCCCCCcceeeeecCCCcchhhccc
Q 042307 794 LMQLQHLEIRKCMDLEEIVFPEEMIEEERKDIMLPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLQIVKCPELKAFILQN 873 (1314)
Q Consensus 794 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~ 873 (1314)
+++|++|++++|.....+ +. ....+++|+.|++++|+....++..
T Consensus 513 l~~L~~L~L~~N~l~~~~--p~--------------------------------~l~~l~~L~~L~Ls~N~l~g~ip~~- 557 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNI--PA--------------------------------ELGDCRSLIWLDLNTNLFNGTIPAA- 557 (768)
T ss_dssp CTTCCEEECCSSCCEEEC--CG--------------------------------GGGGCTTCCEEECCSSEEESBCCGG-
T ss_pred CCCCCEEECCCCcccCcC--CH--------------------------------HHcCCCCCCEEECCCCccCCcCChH-
Confidence 777777777777543222 11 1123566777777766543332211
Q ss_pred cccccccccccccccccccCCCccceecccCCCceeeecCCCC----------------C---CccccccEEEEecCCCc
Q 042307 874 ISTDMTAVGIQPFFNKMVALPSLEEMVLSNMGNLKTIWHSQFA----------------G---ESFCKLKLMEVKFCKSL 934 (1314)
Q Consensus 874 ~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~----------------~---~~~~~L~~L~l~~c~~l 934 (1314)
+.....+..+.+........+...... . ..++.++.+++.. ..+
T Consensus 558 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~ 620 (768)
T 3rgz_A 558 ----------------MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS-RVY 620 (768)
T ss_dssp ----------------GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS-CEE
T ss_pred ----------------Hhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc-cee
Confidence 111111111111111111000000000 0 0011122211111 122
Q ss_pred cccccchHHhhcccccEEEEecCCchHHHhhccCCcccccccccccccceeeecccCccceecccCCCcceecCcccEEE
Q 042307 935 RTIFPHNMFARFLKLESLIVGACGSLQEIFDLQELNSEETHSGAVSRLGKLHVFRLPKLTKIWNKDPRGNLIFQNLVLVR 1014 (1314)
Q Consensus 935 ~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~l~~l~~L~~L~ 1014 (1314)
.+..|..+ ..+++|+.|++++|...+.+|. .++.+++|+.|+++++.-...+ |..+..+++|+.|+
T Consensus 621 ~g~~~~~~-~~l~~L~~LdLs~N~l~g~ip~---------~l~~l~~L~~L~Ls~N~l~g~i----p~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 621 GGHTSPTF-DNNGSMMFLDMSYNMLSGYIPK---------EIGSMPYLFILNLGHNDISGSI----PDEVGDLRGLNILD 686 (768)
T ss_dssp EEECCCSC-SSSBCCCEEECCSSCCBSCCCG---------GGGGCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEE
T ss_pred cccCchhh-hccccccEEECcCCcccccCCH---------HHhccccCCEEeCcCCccCCCC----ChHHhCCCCCCEEE
Confidence 33344443 6788999999999877667765 6678899999999998755455 88899999999999
Q ss_pred EecCCCcccccchhHHhhhccccEEeEeecccceeEecccccccCCcceEeccccCceecccCCCCc
Q 042307 1015 IFECQRLKSVFPTSVAKSLLQLERLSINNCESVEEIVANEGRADEATTKFIFPSSTFLRLRDLPCLT 1081 (1314)
Q Consensus 1015 l~~c~~L~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 1081 (1314)
+++ +++++..|..+ ..+++|+.|++++|+ +.+.++..+ .|.++....+.++|.|-
T Consensus 687 Ls~-N~l~g~ip~~l-~~l~~L~~L~ls~N~-l~g~iP~~~---------~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 687 LSS-NKLDGRIPQAM-SALTMLTEIDLSNNN-LSGPIPEMG---------QFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CCS-SCCEECCCGGG-GGCCCCSEEECCSSE-EEEECCSSS---------SGGGSCGGGGCSCTEEE
T ss_pred CCC-CcccCcCChHH-hCCCCCCEEECcCCc-ccccCCCch---------hhccCCHHHhcCCchhc
Confidence 977 67888788887 899999999999964 666555432 36666666677766543
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.7e-37 Score=370.49 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=219.4
Q ss_pred CEEEEcCCCchHHHHHHHHHH--HhhcccCCCEEEEEEeccCc--CHHHHHHHHHHHhCCCcc----c---c-ChhHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVAR--QARNDKLFDEVVYADVSQTP--DIKKIQGQIADKLGLKFY----E---E-SESGRAR 68 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~----~---~-~~~~~~~ 68 (1314)
||+|+||||+||||||+++|+ +.+.+.+|++++||++++.. +...++..|+++++.... . . +......
T Consensus 154 vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 233 (549)
T 2a5y_B 154 FLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKR 233 (549)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHH
Confidence 589999999999999999998 45667889999999999875 789999999999986521 1 1 1122346
Q ss_pred HHHHHHhcC-CeEEEEEeCCCCcccccccCCCCCCCCceEEEEeccccccccccC-CCccEEecCCCHHHHHHHHHHHhC
Q 042307 69 KLCERLRKE-KKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSSKMD-CQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 69 ~~~~~l~~~-~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~~~~~~~~-~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
.+.+.+. + +|+||||||||+.+++ .+ + ..+||+||||||++.++. ..+ ....+++++|+.+||++||.++++
T Consensus 234 ~l~~~L~-~~kr~LlVLDdv~~~~~~-~~--~-~~~gs~ilvTTR~~~v~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 234 MICNALI-DRPNTLFVFDDVVQEETI-RW--A-QELRLRCLVTTRDVEISN-AASQTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp HHHHHHT-TSTTEEEEEEEECCHHHH-HH--H-HHTTCEEEEEESBGGGGG-GCCSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred HHHHHHc-CCCcEEEEEECCCCchhh-cc--c-ccCCCEEEEEcCCHHHHH-HcCCCCeEEECCCCCHHHHHHHHHHHhc
Confidence 6666776 5 4999999999998765 22 1 127899999999999887 344 446799999999999999999986
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCCCCCchhhhhheeecccccCchhhH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALRELTRPSSSSFSGVPAEAYKSIELSYNHLEGEELK 226 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 226 (1314)
.....+..++++.+|+++|+|+||||.++|+.++.+. .+|.+.+..... .. ....+..++.+||+.|+++ ++
T Consensus 308 ~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~----~~--~~~~i~~~l~~Sy~~L~~~-lk 379 (549)
T 2a5y_B 308 PMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLE----SR--GLVGVECITPYSYKSLAMA-LQ 379 (549)
T ss_dssp CCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHH----HH--CSSTTCCCSSSSSSSHHHH-HH
T ss_pred CCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhh----cc--cHHHHHHHHhcccccccHH-HH
Confidence 5444467788999999999999999999999987764 233333332111 00 1235788999999999988 89
Q ss_pred HHHH-----------hhccccccCCcCHHHHHHhhccc--ccccCcC---CHHHHHHHHHHHHHHHhhccccccCC--CC
Q 042307 227 STFL-----------LCCLMDFIENPSVLYLLSYGMGL--GLFKGTH---TMEEARDRALTLVDKLKNSCLLLDGP--ES 288 (1314)
Q Consensus 227 ~~f~-----------~~~~~~fp~~~~i~~l~~~w~~~--~~~~~~~---~~~~~~~~~~~~l~~L~~~sll~~~~--~~ 288 (1314)
.||. |||+ ||+++.++ +..|+++ |++.... ..++. .. ++++|+++||++... ..
T Consensus 380 ~~f~~Ls~~er~l~~~ls~--fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~---~~-~l~~L~~rsLl~~~~~~~~ 451 (549)
T 2a5y_B 380 RCVEVLSDEDRSALAFAVV--MPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEV---AD-RLKRLSKRGALLSGKRMPV 451 (549)
T ss_dssp HHHHTSCHHHHHHTTGGGS--SCTTCCEE--HHHHHHHSCC-------CCCTHHH---HH-HHHHTTTBSSCSEEECSSS
T ss_pred HHHhccchhhhhHhhheee--eCCCCeee--eeeeeeeccceeccCCCCCCHHHH---HH-HHHHHHHcCCeeEecCCCc
Confidence 9999 9999 78988888 8899999 8886432 22332 22 799999999998642 34
Q ss_pred ceeeechhHHHHHHHHhcccc
Q 042307 289 EYFSVHDVVRDVAISIASRDQ 309 (1314)
Q Consensus 289 ~~~~mH~lv~~~~~~~~~~e~ 309 (1314)
..|.|||+||++|++++.++.
T Consensus 452 ~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 452 LTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CEEECCHHHHHHHHTTSCTHH
T ss_pred eEEEeChHHHHHHHHHHHHHH
Confidence 689999999999998887754
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.9e-35 Score=367.75 Aligned_cols=175 Identities=23% Similarity=0.285 Sum_probs=128.0
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~ 412 (1314)
+.++.+++.+..+|..+. +++++|++++|.+ ..++...|.++++|++|++++|.+..+ |..|+++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCC-CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCC-CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 467788888888887654 6788888888874 456666678888888888888888866 6668888888888888888
Q ss_pred CCCc--cccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccccc
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEG 489 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (1314)
++.+ ..|+++++|++|++++|.++.+| ..++++++|++|++++| .+..++...++++++|++|++++|.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccc-----
Confidence 7766 35888888888888888888775 56888888888888887 455555444778888888888888764
Q ss_pred CCcccccccCcccc--cCCCCCcEEEeEecCCCCCC
Q 042307 490 QSSSERSRASLHEL--KHLSSLNTLEIQVRDPKVLP 523 (1314)
Q Consensus 490 ~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~ 523 (1314)
...+..+ ..+++|+.|++++|.+..++
T Consensus 159 -------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 159 -------ALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp -------CBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred -------ccCHHHhhccccccccEEECCCCcccccC
Confidence 2222222 24567778887777665443
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.1e-33 Score=353.12 Aligned_cols=405 Identities=18% Similarity=0.123 Sum_probs=249.3
Q ss_pred ccCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCc
Q 042307 328 DTLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~ 404 (1314)
...+++++|++++|.+..++.. + .+++|++|++++|.+. .+++..|.++++|++|+|++|.+..+|. .|.++++|+
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 4568999999999999988875 3 8999999999999864 4545567999999999999999999977 599999999
Q ss_pred EEEcCCCcCCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhhc--CCCCCcEEEcC
Q 042307 405 TLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVIS--NLSQLEELYLG 479 (1314)
Q Consensus 405 ~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~--~l~~L~~L~l~ 479 (1314)
+|++++|.+..+ ..|+++++|++|++++|.++.+ |..++++++|++|++++| .+..++...++ .+++|++|+++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECC
Confidence 999999999876 5799999999999999999855 667899999999999998 67777765554 56899999999
Q ss_pred CCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecC
Q 042307 480 DTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLN 559 (1314)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~ 559 (1314)
+|.+. ...+..+..+.+|+.|++..+............. .....++.++++.+
T Consensus 180 ~n~l~------------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~---------------l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 180 SNQIK------------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE---------------LANTSIRNLSLSNS 232 (680)
T ss_dssp TCCCC------------CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH---------------HTTSCCCEEECTTS
T ss_pred CCccc------------ccChhhhhhhhhhhhhhccccccChhhHHHHHHH---------------hhhccccEEEccCC
Confidence 99886 3445567778888888877654321000000000 01133445555555
Q ss_pred CccchhhHHHhhhcc--cceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccC
Q 042307 560 ASICLKDEFFMQLKG--LEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSN 637 (1314)
Q Consensus 560 ~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~ 637 (1314)
......+..+..++. |+.|+++++.........+ ..+++|++|++++|......+ .....+++|+.|++.+
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFS-----HSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCCBSEECT-----TTTTTCTTCCEEECTT
T ss_pred cccccChhHhhccCcCCCCEEECCCCCcCccCcccc--cCcccccEeeCCCCccCccCh-----hhhcCCCCccEEeccc
Confidence 555554455555543 6666666554332222222 345666666666665332211 1233455555555554
Q ss_pred ccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceec
Q 042307 638 LMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEF 717 (1314)
Q Consensus 638 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 717 (1314)
+..-..+... .+..+.. ..+..+++|++|++++|......+ ..+..+
T Consensus 306 ~~~~~~~~~~-------------------~lp~i~~-~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l 352 (680)
T 1ziw_A 306 SFTKQSISLA-------------------SLPKIDD-FSFQWLKCLEHLNMEDNDIPGIKS-------------NMFTGL 352 (680)
T ss_dssp CBCCC-------------------------CCEECT-TTTTTCTTCCEEECCSCCBCCCCT-------------TTTTTC
T ss_pred hhhhcccccc-------------------cccccCh-hhcccCCCCCEEECCCCccCCCCh-------------hHhccc
Confidence 2211000000 0000000 122344555555554443211100 012234
Q ss_pred cccceeeccCCCc-cccccc--c--cccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHHH
Q 042307 718 SQLRKLTLKSLPQ-LRSFCS--V--VAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVR 792 (1314)
Q Consensus 718 ~~L~~L~l~~~~~-l~~~~~--~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 792 (1314)
++|+.|+++++.. +..++. + ...++|+.|++++|.+..+. +..+..+++|+.|++++| .+....+...+.
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 427 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE----SDAFSWLGHLEVLDLGLN-EIGQELTGQEWR 427 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSS-CCEEECCSGGGT
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC----hhhhhCCCCCCEEeCCCC-cCccccCccccc
Confidence 5555555554431 111111 0 11246777777777766543 233445778888888885 343222334466
Q ss_pred HhhcccEeeecccc
Q 042307 793 SLMQLQHLEIRKCM 806 (1314)
Q Consensus 793 ~l~~L~~L~l~~c~ 806 (1314)
.+++|++|++++|.
T Consensus 428 ~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 428 GLENIFEIYLSYNK 441 (680)
T ss_dssp TCTTCCEEECCSCS
T ss_pred CcccccEEecCCCC
Confidence 77788888888775
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-33 Score=350.38 Aligned_cols=180 Identities=21% Similarity=0.251 Sum_probs=131.3
Q ss_pred ccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCC
Q 042307 333 CTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~ 411 (1314)
-++++.+++.+..+|..+. +++++|++++|.+. .++...|.++++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3567888888888887654 67888888888753 45555568888888888888888876 567888888888888888
Q ss_pred cCCCc--cccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCC--ccchhhhcCCCCCcEEEcCCCccccc
Q 042307 412 VLGDV--AVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLK--AISSNVISNLSQLEELYLGDTFIQWE 486 (1314)
Q Consensus 412 ~~~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (1314)
.+..+ ..|+++++|++|++++|.++.+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcceec
Confidence 87764 67888888888888888888775 66888888888888887 454 35665 88888888888888877521
Q ss_pred cccCCcccccccCcccccCCCC-CcEEEeEecCCCCCCCc
Q 042307 487 TEGQSSSERSRASLHELKHLSS-LNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~ 525 (1314)
+ ...+..+.+++. +.+|+++.|.+..++..
T Consensus 169 ~---------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 169 T---------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp C---------TTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred C---------hhhhhhhhccccccceeeccCCCcceeCcc
Confidence 1 112223333333 45788888777666554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.5e-33 Score=346.81 Aligned_cols=176 Identities=20% Similarity=0.194 Sum_probs=111.0
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~ 412 (1314)
++++.++..+..+|..+. +++++|++++|.+. .+++..|.++++|++|+|++|.+..+ |..|.++++|++|++++|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 356666666666666542 35677777777653 34334457777777777777777655 5667777777777777777
Q ss_pred CCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccccc
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEG 489 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (1314)
+..+ ..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~----- 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH----- 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC-----
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccc-----
Confidence 6543 5577777777777777777765 455677777777777776 455543222445777777777777664
Q ss_pred CCcccccccCcccccCCCCCc--EEEeEecCCCCCCC
Q 042307 490 QSSSERSRASLHELKHLSSLN--TLEIQVRDPKVLPK 524 (1314)
Q Consensus 490 ~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~ 524 (1314)
...+..+..+++|+ .|++++|.+..++.
T Consensus 167 -------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 167 -------YLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp -------EECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred -------ccChhhhhhhcccceeEEecCCCccCccCh
Confidence 33344556666666 56666666554443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8e-32 Score=335.53 Aligned_cols=178 Identities=22% Similarity=0.217 Sum_probs=148.9
Q ss_pred ccCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCc
Q 042307 328 DTLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~ 404 (1314)
+..+++++|++++|.+..++.. + ++++|++|++++|.+. .+++..|.++++|++|+|++|.+..+ |..|+++++|+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 4668999999999999988873 3 9999999999999854 55556679999999999999999988 88899999999
Q ss_pred EEEcCCCcCCCc--cccCCCCCCCEEEccCccCc--ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCc----EE
Q 042307 405 TLCLDNGVLGDV--AVIGELKQLEILSFQGSNIE--QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLE----EL 476 (1314)
Q Consensus 405 ~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~----~L 476 (1314)
+|++++|.+..+ ..++++++|++|++++|.++ .+|..++++++|++|++++| .+..+++..++.+++|+ +|
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhcccccccee
Confidence 999999998765 57999999999999999998 57999999999999999998 67777665566666554 89
Q ss_pred EcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 477 YLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 477 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
++++|.+...+ .......+|+.|+++++...
T Consensus 187 ~l~~n~l~~~~-------------~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 187 DMSLNPIDFIQ-------------DQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp ECTTCCCCEEC-------------TTTTTTCEEEEEEEESCCSC
T ss_pred eccCCCcceeC-------------cccccCceeeeeeccCCccc
Confidence 99999885222 22233347999999987653
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=5.7e-31 Score=327.79 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=146.4
Q ss_pred cccCCCccEEEcccCCCcccCC-Cc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccC
Q 042307 327 RDTLKNCTAISLHNCKIGELVD-GL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNL 403 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L 403 (1314)
....+.+++|++++|.+..+++ .+ .+++|++|++++|.+.. +++..|.++++|++|+|++|.+..+ |..|+++++|
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 3466789999999999998854 44 99999999999998654 5445579999999999999999876 7789999999
Q ss_pred cEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCc--EEEc
Q 042307 404 RTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLE--ELYL 478 (1314)
Q Consensus 404 ~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~--~L~l 478 (1314)
++|++++|.+..+ ..++++++|++|++++|.++.++ ..+..+++|++|++++| .+..+++..++.+++|+ +|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEEC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEec
Confidence 9999999999885 77999999999999999999762 33445999999999998 77888777799999999 9999
Q ss_pred CCCccccccccCCcccccccCcccccCCCCCcEEEeEecC
Q 042307 479 GDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRD 518 (1314)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 518 (1314)
++|.+... .+ ......+|+.|+++++.
T Consensus 187 ~~n~l~~~------------~~-~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 187 NGNDIAGI------------EP-GAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp TTCCCCEE------------CT-TTTTTCEEEEEECTTCS
T ss_pred CCCccCcc------------Ch-hHhhhccccccccCCch
Confidence 99988622 22 22334578888887654
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=7.7e-30 Score=315.69 Aligned_cols=154 Identities=25% Similarity=0.279 Sum_probs=87.9
Q ss_pred cCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcE
Q 042307 329 TLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRT 405 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~ 405 (1314)
..+++++|++++|.+..++.. + .+++|++|++++|.+ ..+++..|.++++|++|++++|.+..+| ..|+++++|++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC-CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 344566666666666555432 2 566666666666653 3344444566666666666666665553 45666666666
Q ss_pred EEcCCCcCCCc--cccCCCCCCCEEEccCccCcc--cchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCC----cEEE
Q 042307 406 LCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQ--LPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQL----EELY 477 (1314)
Q Consensus 406 L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L----~~L~ 477 (1314)
|++++|.+..+ ..++++++|++|++++|.++. +|..++++++|++|++++| .+..+++..++.+++| ++|+
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcc
Confidence 66666665554 235666666666666666553 4566666666666666665 4455544445555555 5566
Q ss_pred cCCCccc
Q 042307 478 LGDTFIQ 484 (1314)
Q Consensus 478 l~~~~~~ 484 (1314)
+++|.+.
T Consensus 184 l~~n~l~ 190 (570)
T 2z63_A 184 LSLNPMN 190 (570)
T ss_dssp CTTCCCC
T ss_pred cCCCCce
Confidence 6655553
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=4.9e-30 Score=329.30 Aligned_cols=154 Identities=23% Similarity=0.309 Sum_probs=70.8
Q ss_pred cCCCccEEEcccCCCcccCC-Cc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcE
Q 042307 329 TLKNCTAISLHNCKIGELVD-GL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRT 405 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~ 405 (1314)
.++++++|++++|.+..++. .+ .+++|++|++++|.....+++..|.++++|++|+|++|.+..+ |..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 44455555555555544422 22 4555555555555444444334445555555555555555433 444555555555
Q ss_pred EEcCCCcCCC--cc--ccCCCCCCCEEEccCccCccc--chhhcCCCCCCEEeeccCCCCCccchhhhcCC--CCCcEEE
Q 042307 406 LCLDNGVLGD--VA--VIGELKQLEILSFQGSNIEQL--PREIGQLTRLRSLNLSSCYQLKAISSNVISNL--SQLEELY 477 (1314)
Q Consensus 406 L~L~~~~~~~--~~--~~~~L~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l--~~L~~L~ 477 (1314)
|+|++|.+.. +. .++++++|++|++++|.++.+ +..++++++|++|++++| .+..+.+..++.+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccCCccceEE
Confidence 5555555443 22 244555555555555544433 233455555555555554 2332222223333 4444444
Q ss_pred cCCCcc
Q 042307 478 LGDTFI 483 (1314)
Q Consensus 478 l~~~~~ 483 (1314)
+++|.+
T Consensus 181 L~~n~l 186 (844)
T 3j0a_A 181 LAANSL 186 (844)
T ss_dssp ECCSBS
T ss_pred CCCCcc
Confidence 444443
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=4.2e-29 Score=320.61 Aligned_cols=409 Identities=17% Similarity=0.116 Sum_probs=276.1
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCc-CCCC-CcccccCccCcEEEcCCC
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMH-LLSL-PSSLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~-~~~l-p~~~~~l~~L~~L~L~~~ 411 (1314)
+..+.+++.+..+|. -.+++++|++++|.+....| ..|.++++|++|+|++|. +..+ |..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 467888899999998 66899999999998654444 446999999999999995 4466 778999999999999999
Q ss_pred cCCCc--cccCCCCCCCEEEccCccCcc-cchh--hcCCCCCCEEeeccCCCCCcc-chhhhcCCCCCcEEEcCCCcccc
Q 042307 412 VLGDV--AVIGELKQLEILSFQGSNIEQ-LPRE--IGQLTRLRSLNLSSCYQLKAI-SSNVISNLSQLEELYLGDTFIQW 485 (1314)
Q Consensus 412 ~~~~~--~~~~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~ 485 (1314)
.+..+ ..|+++++|++|+|++|.++. +|.. ++++++|++|++++| .+..+ +...++++++|++|++++|.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~- 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF- 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC-
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC-
Confidence 98865 789999999999999999984 5665 899999999999998 45554 3344899999999999999886
Q ss_pred ccccCCcccccccCcccccCC--CCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccc
Q 042307 486 ETEGQSSSERSRASLHELKHL--SSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASIC 563 (1314)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 563 (1314)
...+..+..+ ++|+.|+++.|.+........ ..+. ... ....++.++++.+....
T Consensus 162 -----------~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~----------~~~-~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 162 -----------LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCM----------NPF-RNMVLEILDVSGNGWTV 218 (844)
T ss_dssp -----------CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSS----------CTT-TTCCBSEEBCSSCCSST
T ss_pred -----------eeCHHHcccccCCccceEECCCCccccccccch-hhcC----------Ccc-ccCceeEEecCCCcCch
Confidence 3344455555 789999999887654322100 0000 000 01135556666554433
Q ss_pred hhhHHHhhh---cccceeecccccC--------chh-hccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccc
Q 042307 564 LKDEFFMQL---KGLEELWLDEVQG--------VEN-VVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLE 631 (1314)
Q Consensus 564 ~~~~~~~~l---~~L~~L~l~~~~~--------~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~ 631 (1314)
..+..+... ..++.|.+..+.. ... ....+.....++|+.|++++|......+ .....+++|+
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~ 293 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-----RVFETLKDLK 293 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS-----CCSSSCCCCC
T ss_pred hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh-----hhhhcCCCCC
Confidence 333322221 3455555541110 000 1111211123678888888876543211 1345678888
Q ss_pred eecccCccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCccc
Q 042307 632 SLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEV 711 (1314)
Q Consensus 632 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 711 (1314)
.|+++++. ++.+.. ..+..+++|+.|++++| .++.+.+ ..+.++++|+.|++++|. +..++.
T Consensus 294 ~L~L~~n~-i~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~------------ 355 (844)
T 3j0a_A 294 VLNLAYNK-INKIAD--EAFYGLDNLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKNH-IAIIQD------------ 355 (844)
T ss_dssp EEEEESCC-CCEECT--TTTTTCSSCCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSCC-CCCCCS------------
T ss_pred EEECCCCc-CCCCCh--HHhcCCCCCCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCCC-CCccCh------------
Confidence 88888743 332221 12456788999999886 4555433 346678899999998874 332220
Q ss_pred ccceeccccceeeccCCCcccccccccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHH
Q 042307 712 VDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLV 791 (1314)
Q Consensus 712 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 791 (1314)
..+..+++|+.|+++++. ++.+ ..+++|+.|++++|.+..+. . ...+++.|++++ +.++.+.....+
T Consensus 356 ~~~~~l~~L~~L~Ls~N~-l~~i---~~~~~L~~L~l~~N~l~~l~-----~---~~~~l~~L~ls~-N~l~~l~~~~~~ 422 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNA-LTTI---HFIPSIPDIFLSGNKLVTLP-----K---INLTANLIHLSE-NRLENLDILYFL 422 (844)
T ss_dssp SCSCSCCCCCEEEEETCC-SCCC---SSCCSCSEEEEESCCCCCCC-----C---CCTTCCEEECCS-CCCCSSTTHHHH
T ss_pred hhhcCCCCCCEEECCCCC-CCcc---cCCCCcchhccCCCCccccc-----c---cccccceeeccc-CccccCchhhhh
Confidence 123457888888888864 3333 33788999999988876542 2 246788999988 577776555556
Q ss_pred HHhhcccEeeecccc
Q 042307 792 RSLMQLQHLEIRKCM 806 (1314)
Q Consensus 792 ~~l~~L~~L~l~~c~ 806 (1314)
..+++|+.|+++++.
T Consensus 423 ~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 423 LRVPHLQILILNQNR 437 (844)
T ss_dssp TTCTTCCEEEEESCC
T ss_pred hcCCccceeeCCCCc
Confidence 688899999998874
No 13
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.2e-30 Score=313.25 Aligned_cols=259 Identities=17% Similarity=0.214 Sum_probs=199.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCE-EEEEEeccCcCHHHHHHHHHHHhCC---Ccccc-----Chh----HHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDE-VVYADVSQTPDIKKIQGQIADKLGL---KFYEE-----SES----GRA 67 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~---~~~~~-----~~~----~~~ 67 (1314)
||+|+||||+||||||++++++.+...+|+. ++|+++++..+...+...+++.++. ..... ... ...
T Consensus 152 VV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~ 231 (1221)
T 1vt4_I 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231 (1221)
T ss_dssp EEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHH
Confidence 5899999999999999999988766667876 9999999998888887777765421 11100 111 123
Q ss_pred HHHHHHHh--cCCeEEEEEeCCCCcccccccCCCCCCCCceEEEEeccccccccccCCCccEEec------CCCHHHHHH
Q 042307 68 RKLCERLR--KEKKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLVG------ALNESEAWD 139 (1314)
Q Consensus 68 ~~~~~~l~--~~~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~~~~~~~~~~~~~~l~------~l~~~ea~~ 139 (1314)
..+.+.+. .++|+||||||||+.+.|+.+ .+|++||||||++.++. .+.....+.++ +|+.+||++
T Consensus 232 e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-----~pGSRILVTTRd~~Va~-~l~g~~vy~LeL~d~dL~LS~eEA~e 305 (1221)
T 1vt4_I 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKS 305 (1221)
T ss_dssp HHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-----HSSCCEEEECSCSHHHH-HHHHHSSCEEEECSSSSCCCHHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-----CCCeEEEEeccChHHHH-hcCCCeEEEecCccccCCcCHHHHHH
Confidence 34444441 379999999999999888876 27899999999998875 23333456666 899999999
Q ss_pred HHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcC--ChhHHHHHHHHhcCCCCCCCCCCchhhhhheeecc
Q 042307 140 LFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRNK--NTFEWKNALRELTRPSSSSFSGVPAEAYKSIELSY 217 (1314)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~--~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~ 217 (1314)
||.++.+.. . .+...+ .|+|+|+||.++|+.++.+ +.++|+.. ....+..+|++||
T Consensus 306 LF~~~~g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------------~~~~I~aaLelSY 363 (1221)
T 1vt4_I 306 LLLKYLDCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV--------------NCDKLTTIIESSL 363 (1221)
T ss_dssp HHHHHHCCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------------SCHHHHHHHHHHH
T ss_pred HHHHHcCCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------------ChhHHHHHHHHHH
Confidence 999997543 1 222333 3999999999999999988 67788642 1357899999999
Q ss_pred cccCchhh-HHHHHhhccccccCCcCH--HHHHHhhcccccccCcCCHHHHHHHHHHHHHHHhhccccccCCCCceeeec
Q 042307 218 NHLEGEEL-KSTFLLCCLMDFIENPSV--LYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLDGPESEYFSVH 294 (1314)
Q Consensus 218 ~~L~~~~~-~~~f~~~~~~~fp~~~~i--~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~mH 294 (1314)
+.|+++ . |+||.+||+ ||+++.| ..++.+|.++|. + .+..++++|+++||++...+...|.||
T Consensus 364 d~Lp~e-elK~cFL~LAI--FPed~~I~~elLa~LW~aeGe-------e----dAe~~L~eLvdRSLLq~d~~~~rYrMH 429 (1221)
T 1vt4_I 364 NVLEPA-EYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIK-------S----DVMVVVNKLHKYSLVEKQPKESTISIP 429 (1221)
T ss_dssp HHSCTT-HHHHHHHHTTS--SCTTSCEEHHHHHHHHCSSCS-------H----HHHHHHHHHHTSSSSSBCSSSSEEBCC
T ss_pred HhCCHH-HHHHHHHHHhC--CCCCCCCCHHHHHHHhcCCCH-------H----HHHHHHHHHHhhCCEEEeCCCCEEEeh
Confidence 999999 7 999999999 6777665 478899988761 1 245679999999999886566789999
Q ss_pred hhHHHHH
Q 042307 295 DVVRDVA 301 (1314)
Q Consensus 295 ~lv~~~~ 301 (1314)
|++++++
T Consensus 430 DLllELr 436 (1221)
T 1vt4_I 430 SIYLELK 436 (1221)
T ss_dssp CHHHHHH
T ss_pred HHHHHHh
Confidence 9999854
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.6e-29 Score=310.92 Aligned_cols=172 Identities=17% Similarity=0.246 Sum_probs=94.8
Q ss_pred EEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCcCC
Q 042307 336 ISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGVLG 414 (1314)
Q Consensus 336 l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~~~ 414 (1314)
.+.+++.+..+|..+. ++|++|++++|.+. .+++..|.++++|++|++++|.+..+ |..|.++++|++|++++|.+.
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccCC-CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 3445555555555432 45666666665533 22222345666666666666666554 345666666666666666655
Q ss_pred Cc--cccCCCCCCCEEEccCccCcc--cchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccC
Q 042307 415 DV--AVIGELKQLEILSFQGSNIEQ--LPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQ 490 (1314)
Q Consensus 415 ~~--~~~~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 490 (1314)
.+ ..++++++|++|++++|.++. .|..++++++|++|++++|..++.+|...++++++|++|++++|.+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~------ 161 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR------ 161 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC------
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc------
Confidence 43 335666666666666666553 34455666666666666654455555444556666666666665554
Q ss_pred CcccccccCcccccCCCCCcEEEeEecCCCC
Q 042307 491 SSSERSRASLHELKHLSSLNTLEIQVRDPKV 521 (1314)
Q Consensus 491 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 521 (1314)
+..+..+..+++|++|+++.+....
T Consensus 162 ------~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 162 ------NYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp ------EECTTTTTTCSEEEEEEEECSBSTT
T ss_pred ------ccChhhhhccccCceEecccCcccc
Confidence 3334455555556666665554433
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.4e-29 Score=308.11 Aligned_cols=498 Identities=16% Similarity=0.189 Sum_probs=331.7
Q ss_pred ccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCC
Q 042307 333 CTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~ 411 (1314)
.+.++.++..+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 456788888888998865 357999999999854 45555679999999999999999987 567999999999999999
Q ss_pred cCCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCc--cchhhhcCCCCCcEEEcCCCccccc
Q 042307 412 VLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKA--ISSNVISNLSQLEELYLGDTFIQWE 486 (1314)
Q Consensus 412 ~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (1314)
.+..+ ..|+++++|++|++++|.++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~-- 162 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ-- 162 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCC--
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccc--
Confidence 98865 679999999999999999998875 6999999999999998 5554 5666 999999999999999886
Q ss_pred cccCCcccccccCcccccCCCCC----cEEEeEecCCCCCCCcc-cccccceeEEEEcccc-----CCCCCCccceEEEe
Q 042307 487 TEGQSSSERSRASLHELKHLSSL----NTLEIQVRDPKVLPKGF-LSQKLKRYKVFIGDEW-----NWPDSYENQRILKL 556 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~-~~~~L~~l~~~~~~~~-----~~~~~~~~l~~l~l 556 (1314)
...+..++.+++| ..|+++++.+..++... ...+|+.+.+...... .+......++...+
T Consensus 163 ----------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l 232 (570)
T 2z63_A 163 ----------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232 (570)
T ss_dssp ----------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEE
T ss_pred ----------eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeee
Confidence 2333455555566 78888888877766543 2335666555432100 01112223333322
Q ss_pred ecC------CccchhhHHHhhhcc--cceeecccccCchh-hccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcC
Q 042307 557 KLN------ASICLKDEFFMQLKG--LEELWLDEVQGVEN-VVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAF 627 (1314)
Q Consensus 557 ~~~------~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~ 627 (1314)
... .........+..+.+ ++.+++.++..... ....+ ..+++|++|++++|... .++ . ....+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~-~l~---~--~~~~~ 304 (570)
T 2z63_A 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIE-RVK---D--FSYNF 304 (570)
T ss_dssp EEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEESCEEC-SCC---B--CCSCC
T ss_pred ccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh--cCcCcccEEEecCccch-hhh---h--hhccC
Confidence 211 111222233333333 34445544422111 12222 45788999999888532 121 1 12334
Q ss_pred CccceecccCccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccC
Q 042307 628 PLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDIN 707 (1314)
Q Consensus 628 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 707 (1314)
+|+.|++.++.- .. .+...+++|+.|++.++......+. ..+++|++|++++|.......
T Consensus 305 -~L~~L~l~~n~~-~~-----l~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~--------- 364 (570)
T 2z63_A 305 -GWQHLELVNCKF-GQ-----FPTLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGC--------- 364 (570)
T ss_dssp -CCSEEEEESCBC-SS-----CCBCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEE---------
T ss_pred -CccEEeeccCcc-cc-----cCcccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCcccc---------
Confidence 888999888543 22 2235788999999998764443321 578999999998876332210
Q ss_pred CcccccceeccccceeeccCCCcccccccccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCccccCc
Q 042307 708 NTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFS 787 (1314)
Q Consensus 708 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 787 (1314)
.......+++|+.|+++++......+.+..+++|+.|++++|.+..... ...+..+++|+.|++++| .+... .
T Consensus 365 --~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n-~l~~~-~ 437 (570)
T 2z63_A 365 --CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHT-HTRVA-F 437 (570)
T ss_dssp --EEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT---SCTTTTCTTCCEEECTTS-CCEEC-C
T ss_pred --ccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc---hhhhhcCCCCCEEeCcCC-ccccc-c
Confidence 0012346889999999998644333346778999999999998764422 123456899999999997 45544 2
Q ss_pred HHHHHHhhcccEeeeccccccccccccCccccccccccccchhhhHhhhccccccccccCCCCCCCCcceeeeecCCCcc
Q 042307 788 TSLVRSLMQLQHLEIRKCMDLEEIVFPEEMIEEERKDIMLPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLQIVKCPELK 867 (1314)
Q Consensus 788 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~ 867 (1314)
+..+..+++|++|++++|...+..
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~-------------------------------------------------------- 461 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENF-------------------------------------------------------- 461 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGE--------------------------------------------------------
T ss_pred hhhhhcCCcCcEEECcCCcCcccc--------------------------------------------------------
Confidence 345778999999999998632111
Q ss_pred hhhccccccccccccccccccccccCCCccceecccCCCceeeecCCCCCCccccccEEEEecCCCccccccchHHhhcc
Q 042307 868 AFILQNISTDMTAVGIQPFFNKMVALPSLEEMVLSNMGNLKTIWHSQFAGESFCKLKLMEVKFCKSLRTIFPHNMFARFL 947 (1314)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~l~ 947 (1314)
++..+..+++|+.|++++| .++.+....+.. +++|+.|++.+|. +++. |...+..++
T Consensus 462 ------------------~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~-~~~~~~~l~ 518 (570)
T 2z63_A 462 ------------------LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNS--LSSLQVLNMASNQ-LKSV-PDGIFDRLT 518 (570)
T ss_dssp ------------------ECSCCTTCTTCCEEECTTS-CCCEECTTTTTT--CTTCCEEECCSSC-CSCC-CTTTTTTCT
T ss_pred ------------------chhhhhcccCCCEEECCCC-ccccCChhhhhc--ccCCCEEeCCCCc-CCCC-CHHHhhccc
Confidence 1111235667777777776 344443333322 5778888887774 5553 444557788
Q ss_pred cccEEEEecCCch
Q 042307 948 KLESLIVGACGSL 960 (1314)
Q Consensus 948 ~L~~L~l~~c~~l 960 (1314)
+|++|++++|+..
T Consensus 519 ~L~~L~l~~N~~~ 531 (570)
T 2z63_A 519 SLQKIWLHTNPWD 531 (570)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCcEEEecCCccc
Confidence 8888888886543
No 16
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=1.2e-28 Score=335.68 Aligned_cols=285 Identities=20% Similarity=0.289 Sum_probs=218.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc--ccCCCEEEEEEeccCc--CHHHHHHHHHHHhCCCccc-----cChhHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN--DKLFDEVVYADVSQTP--DIKKIQGQIADKLGLKFYE-----ESESGRARKLC 71 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~--~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~ 71 (1314)
+|+|+||||+||||||+++|++.+. ..++++++|+++++.. .....+..++..++..... .........+.
T Consensus 149 ~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 228 (1249)
T 3sfz_A 149 WVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLR 228 (1249)
T ss_dssp EEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHH
Confidence 5899999999999999999988643 3456889999998854 3445566777777654321 12223334444
Q ss_pred HHHhc-CCeEEEEEeCCCCcccccccCCCCCCCCceEEEEeccccccccccCCCccEEecC-CCHHHHHHHHHHHhCCCC
Q 042307 72 ERLRK-EKKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLVGA-LNESEAWDLFKKLVGDKI 149 (1314)
Q Consensus 72 ~~l~~-~~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~~~~~~~~~~~~~~l~~-l~~~ea~~l~~~~~~~~~ 149 (1314)
..+.. ++|+||||||||+.++|+.+ .+|++||||||++.++....+....+.++. |+.+||+++|...++..
T Consensus 229 ~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~- 302 (1249)
T 3sfz_A 229 VLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK- 302 (1249)
T ss_dssp HHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-
T ss_pred HHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-
Confidence 44431 34999999999999888776 568999999999998753456678899996 99999999999988542
Q ss_pred CCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCC----CCCchhhhhheeecccccCchhh
Q 042307 150 ENNDLKAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALRELTRPSSSSF----SGVPAEAYKSIELSYNHLEGEEL 225 (1314)
Q Consensus 150 ~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~----~~~~~~~~~~l~~s~~~L~~~~~ 225 (1314)
.+...+.+++|+++|+|+||||.++|++++.++ ..|++.++.+........ ......+.++|.+||+.|+++ .
T Consensus 303 -~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~ 379 (1249)
T 3sfz_A 303 -KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-I 379 (1249)
T ss_dssp -STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-T
T ss_pred -hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-H
Confidence 233456789999999999999999999998875 579888888865332221 122356899999999999999 7
Q ss_pred HHHHHhhccccccCCcCH--HHHHHhhcccccccCcCCHHHHHHHHHHHHHHHhhccccccCCC--CceeeechhHHHHH
Q 042307 226 KSTFLLCCLMDFIENPSV--LYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLDGPE--SEYFSVHDVVRDVA 301 (1314)
Q Consensus 226 ~~~f~~~~~~~fp~~~~i--~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~--~~~~~mH~lv~~~~ 301 (1314)
|+||.+||+ ||+++.+ ..++..|.++ ......++++|+++||++...+ ...|.||++||+++
T Consensus 380 ~~~~~~l~~--f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~ 445 (1249)
T 3sfz_A 380 KDYYTDLSI--LQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFL 445 (1249)
T ss_dssp HHHHHHGGG--SCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHH
T ss_pred HHHHHHhCc--cCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHH
Confidence 999999999 6777655 4888899543 2334567999999999986532 23699999999999
Q ss_pred HHHhccc
Q 042307 302 ISIASRD 308 (1314)
Q Consensus 302 ~~~~~~e 308 (1314)
++++.+|
T Consensus 446 ~~~~~~~ 452 (1249)
T 3sfz_A 446 TEKNRSQ 452 (1249)
T ss_dssp HHHTGGG
T ss_pred HhhhhHH
Confidence 9997765
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=8.9e-27 Score=286.35 Aligned_cols=495 Identities=19% Similarity=0.239 Sum_probs=276.4
Q ss_pred CCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCcCCCc--cccCCCCCCCEE
Q 042307 352 CPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEIL 428 (1314)
Q Consensus 352 ~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L 428 (1314)
|+...+.+.+++. ...+|..++ ++|++|++++|.+..+ |..|.++++|++|++++|.+..+ ..|+++++|++|
T Consensus 4 C~~~~~c~~~~~~-l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 4 CDASGVCDGRSRS-FTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSEEECTTSC-CSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCceEECCCCc-cccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 4445556666655 457787653 6899999999998876 56789999999999999988765 568899999999
Q ss_pred EccCccCcccchh-hcCCCCCCEEeeccCCCCCcc--chhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccC
Q 042307 429 SFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAI--SSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKH 505 (1314)
Q Consensus 429 ~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 505 (1314)
++++|.++.+|.. ++++++|++|++++| .+..+ |.. ++++++|++|++++|.+.. ......+.+
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~-----------~~~~~~~~~ 146 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETFS-----------EIRRIDFAG 146 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSCC-----------EECTTTTTT
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhh-hhccCCccEEECCCCcccc-----------ccCHhhhhc
Confidence 9999998877655 899999999999987 55543 443 7889999999998886320 122246778
Q ss_pred CCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccC
Q 042307 506 LSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQG 585 (1314)
Q Consensus 506 l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 585 (1314)
+++|++|+++++.+..... ..+..+++|++|++.++..
T Consensus 147 l~~L~~L~L~~n~l~~~~~------------------------------------------~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQS------------------------------------------QSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CCEEEEEEEEETTCCEECT------------------------------------------TTTTTCSEEEEEEEECSBS
T ss_pred ccccCeeeccCCcccccCh------------------------------------------hhhhccccCceEecccCcc
Confidence 8888999998887654221 1122234444444443332
Q ss_pred chhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecC
Q 042307 586 VENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESC 665 (1314)
Q Consensus 586 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 665 (1314)
.. ....+ ...+++|++|++++|....... ........+ ++|+.|+++++
T Consensus 185 ~~-~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~---------------------------~~L~~L~l~~n 233 (549)
T 2z81_A 185 AF-LLEIF-ADILSSVRYLELRDTNLARFQF--SPLPVDEVS---------------------------SPMKKLAFRGS 233 (549)
T ss_dssp TT-HHHHH-HHSTTTBSEEEEESCBCTTCCC--CCCSSCCCC---------------------------CCCCEEEEESC
T ss_pred cc-cchhh-HhhcccccEEEccCCccccccc--cccchhhhh---------------------------hcccceecccc
Confidence 11 11111 1235566666666654221000 000001112 33334443332
Q ss_pred CCcccccc---hhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCcccccccccccCc
Q 042307 666 EKLTHIFS---FSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAFPN 742 (1314)
Q Consensus 666 ~~l~~l~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 742 (1314)
. +++... ......+++|+.+++.+|..... . .+.... ...+..+++
T Consensus 234 ~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~-~--------------------~~~~~~---------~~~~~~l~~ 282 (549)
T 2z81_A 234 V-LTDESFNELLKLLRYILELSEVEFDDCTLNGL-G--------------------DFNPSE---------SDVVSELGK 282 (549)
T ss_dssp E-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECC-S--------------------CCCCCT---------TTCCCCCTT
T ss_pred c-cchhHHHHHHHHhhhhcccccccccccccccc-c--------------------cccccc---------hhhhhhhcc
Confidence 1 111100 01123455666666665531110 0 000000 000112233
Q ss_pred cceeeeccccccccc-CCCCCCcccccCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccccccccccccCcccccc
Q 042307 743 LETLKLSAINSETIW-HNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMDLEEIVFPEEMIEEE 821 (1314)
Q Consensus 743 L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 821 (1314)
|+.|.+.++.+.... ...++.....+++|+.|++++| +++.+ +...+..+++|++|++++|.....+...
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~------- 353 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKN------- 353 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHH-------
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccC-CHHHHhcCccccEEEccCCccccccccc-------
Confidence 333444333222110 0111111223467888888874 56665 3444567888888888887533211000
Q ss_pred ccccccchhhhHhhhccccccccccCCCCCCCCcceeeeecCCCcchhhccccccccccccccccccccccCCCccceec
Q 042307 822 RKDIMLPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLQIVKCPELKAFILQNISTDMTAVGIQPFFNKMVALPSLEEMVL 901 (1314)
Q Consensus 822 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l 901 (1314)
......+++|+.|++++|.- +.++.. ...+..+++|+.|++
T Consensus 354 ------------------------~~~~~~l~~L~~L~Ls~N~l-~~~~~~--------------~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 354 ------------------------SACKGAWPSLQTLVLSQNHL-RSMQKT--------------GEILLTLKNLTSLDI 394 (549)
T ss_dssp ------------------------HTCTTSSTTCCEEECTTSCC-CCHHHH--------------HHHGGGCTTCCEEEC
T ss_pred ------------------------hhhhhccccCcEEEccCCcc-cccccc--------------hhhhhcCCCCCEEEC
Confidence 00112356777777777632 211100 011346778888888
Q ss_pred ccCCCceeeecCCCCCCccccccEEEEecCCCccccccchHHhhcccccEEEEecCCchHHHhhccCCcccccccccccc
Q 042307 902 SNMGNLKTIWHSQFAGESFCKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGACGSLQEIFDLQELNSEETHSGAVSR 981 (1314)
Q Consensus 902 ~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 981 (1314)
+++ .++.++..... +++|+.|++++|. ++. +|..+ .++|++|++++|. +..++ ..+++
T Consensus 395 s~N-~l~~lp~~~~~---~~~L~~L~Ls~N~-l~~-l~~~~---~~~L~~L~Ls~N~-l~~~~------------~~l~~ 452 (549)
T 2z81_A 395 SRN-TFHPMPDSCQW---PEKMRFLNLSSTG-IRV-VKTCI---PQTLEVLDVSNNN-LDSFS------------LFLPR 452 (549)
T ss_dssp TTC-CCCCCCSCCCC---CTTCCEEECTTSC-CSC-CCTTS---CTTCSEEECCSSC-CSCCC------------CCCTT
T ss_pred CCC-CCccCChhhcc---cccccEEECCCCC-ccc-ccchh---cCCceEEECCCCC-hhhhc------------ccCCh
Confidence 876 45555543222 4678888887775 433 33322 2577888887763 22221 24667
Q ss_pred cceeeecccCccceecccCCCcceecCcccEEEEecCCCcccccchhHHhhhccccEEeEeecc
Q 042307 982 LGKLHVFRLPKLTKIWNKDPRGNLIFQNLVLVRIFECQRLKSVFPTSVAKSLLQLERLSINNCE 1045 (1314)
Q Consensus 982 L~~L~l~~~~~l~~i~~~~~~~l~~l~~L~~L~l~~c~~L~~~~~~~~~~~l~~L~~L~i~~c~ 1045 (1314)
|+.|+++++. ++.+ |. ...+++|+.|++++ ++++.+.|..+ ..+++|+.|++++|+
T Consensus 453 L~~L~Ls~N~-l~~i----p~-~~~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 453 LQELYISRNK-LKTL----PD-ASLFPVLLVMKISR-NQLKSVPDGIF-DRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCEEECCSSC-CSSC----CC-GGGCTTCCEEECCS-SCCCCCCTTGG-GGCTTCCEEECCSSC
T ss_pred hcEEECCCCc-cCcC----CC-cccCccCCEEecCC-CccCCcCHHHH-hcCcccCEEEecCCC
Confidence 7777777773 5555 43 34677788888866 46777555544 677778888877765
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=6.7e-27 Score=294.21 Aligned_cols=147 Identities=24% Similarity=0.311 Sum_probs=114.6
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~ 412 (1314)
++.+.++..+..+|..+. +++++|+|++|.+ ..+|+..|.++++|++|+|++|.++.+|+ .|.++++|++|+|++|.
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i-~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCCC-CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 456667777888887652 4688888888875 46666667888888888888888888744 68888888888888888
Q ss_pred CCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCcc--chhhhcCCCCCcEEEcCCCccc
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAI--SSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~--~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
++.+ ..|+++++|++|++++|+++.+|. .|+++++|++|++++| .+..+ |.. ++++++|++|++++|.+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCcccc
Confidence 8765 568888888888888888888765 4788888888888887 45443 443 778888888888888775
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=286.61 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=112.9
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~ 412 (1314)
+++++++|.+..+|..+. ++|++|++++|.+ ..+++..|.++++|++|++++|.+..+ |..|.++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYI-SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCC-CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcc-cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 578899999988887665 7889999988875 345555568888999999999988877 6788888888888888888
Q ss_pred CCCccccCCCCCCCEEEccCccCcc--cchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCC--cEEEcCCCcc
Q 042307 413 LGDVAVIGELKQLEILSFQGSNIEQ--LPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQL--EELYLGDTFI 483 (1314)
Q Consensus 413 ~~~~~~~~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L--~~L~l~~~~~ 483 (1314)
++.++.. .+++|++|++++|.++. +|..++++++|++|++++| .+.. ..++.+++| ++|++++|.+
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeecccc
Confidence 8876444 78888888888888875 5678888888888888887 4443 236667777 8888887766
No 20
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=6.7e-27 Score=288.65 Aligned_cols=281 Identities=20% Similarity=0.302 Sum_probs=205.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc-ccCC-CEEEEEEeccCcC--HHHHHHHHHHHhCCCc-----cccChhHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN-DKLF-DEVVYADVSQTPD--IKKIQGQIADKLGLKF-----YEESESGRARKLC 71 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~ 71 (1314)
+|+|+||||+||||||++++++.+. ...| ++++|++++.... +...+..++..++... ...........+.
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 228 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLR 228 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHH
Confidence 5899999999999999999987644 4567 5899999987632 2233333455555311 1122233445566
Q ss_pred HHHhc-CCeEEEEEeCCCCcccccccCCCCCCCCceEEEEeccccccccccCCCccEEe---cCCCHHHHHHHHHHHhCC
Q 042307 72 ERLRK-EKKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQDVLSSKMDCQNNFLV---GALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 72 ~~l~~-~~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~~~~~~~~~~~~~~l---~~l~~~ea~~l~~~~~~~ 147 (1314)
..+.+ .+++||||||||+.+.++.+ .++++||||||++.+... .. ...+++ ++|+.+||+++|...++.
T Consensus 229 ~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 229 ILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp HHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred HHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCC
Confidence 55553 37899999999998777665 457899999999987762 22 344555 589999999999999864
Q ss_pred CCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCCC----CCCCchhhhhheeecccccCch
Q 042307 148 KIENNDLKAVAVDIAKACGGLPIAIVTIARALRNKNTFEWKNALRELTRPSSSS----FSGVPAEAYKSIELSYNHLEGE 223 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~----~~~~~~~~~~~l~~s~~~L~~~ 223 (1314)
. .....+.+.+|+++|+|+|+||.++|++++... ..|...++.+....... .......+..++..||+.|+++
T Consensus 302 ~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~ 378 (591)
T 1z6t_A 302 K--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378 (591)
T ss_dssp C--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT
T ss_pred C--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH
Confidence 2 222345688999999999999999999998773 47988888876533221 1123357889999999999999
Q ss_pred hhHHHHHhhccccccCCcCH--HHHHHhhcccccccCcCCHHHHHHHHHHHHHHHhhccccccC--CCCceeeechhHHH
Q 042307 224 ELKSTFLLCCLMDFIENPSV--LYLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLDG--PESEYFSVHDVVRD 299 (1314)
Q Consensus 224 ~~~~~f~~~~~~~fp~~~~i--~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~--~~~~~~~mH~lv~~ 299 (1314)
.+.||.++|+ ||+++.+ ..+...|...+ .....++++|+++|+++.. +....|.||++||+
T Consensus 379 -~~~~l~~la~--f~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~ 443 (591)
T 1z6t_A 379 -IKDYYTDLSI--LQKDVKVPTKVLCILWDMET------------EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVD 443 (591)
T ss_dssp -THHHHHHGGG--CCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHH
T ss_pred -HHHHHHHccc--cCCCCccCHHHHHHHhccCH------------HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHH
Confidence 7999999999 6676554 47777785321 2245679999999999754 23347999999999
Q ss_pred HHHHHhc
Q 042307 300 VAISIAS 306 (1314)
Q Consensus 300 ~~~~~~~ 306 (1314)
+++....
T Consensus 444 ~~~~~~~ 450 (591)
T 1z6t_A 444 FLTEKNC 450 (591)
T ss_dssp HHHHHTG
T ss_pred HHHhhhh
Confidence 9998844
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=4.5e-26 Score=286.64 Aligned_cols=156 Identities=25% Similarity=0.277 Sum_probs=134.4
Q ss_pred cccCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccC
Q 042307 327 RDTLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNL 403 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L 403 (1314)
.+...++++|+|++|.+..+++. + ++++|++|+|++|.+ ..+++++|.++++|++|+|++|.++.+|. .|.++++|
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 45677899999999999999864 4 899999999999975 56788888999999999999999999865 58999999
Q ss_pred cEEEcCCCcCCCc--cccCCCCCCCEEEccCccCc--ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCC----cE
Q 042307 404 RTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIE--QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQL----EE 475 (1314)
Q Consensus 404 ~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L----~~ 475 (1314)
++|++++|.++.+ ..|+++++|++|++++|.++ .+|..++.+++|++|++++| .+..++...+..+.++ ..
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhh
Confidence 9999999999887 46999999999999999997 45788999999999999998 6777776656655444 36
Q ss_pred EEcCCCccc
Q 042307 476 LYLGDTFIQ 484 (1314)
Q Consensus 476 L~l~~~~~~ 484 (1314)
++++.|.+.
T Consensus 206 ~~ls~n~l~ 214 (635)
T 4g8a_A 206 LDLSLNPMN 214 (635)
T ss_dssp EECTTCCCC
T ss_pred hhcccCccc
Confidence 778877765
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=9.2e-27 Score=291.00 Aligned_cols=393 Identities=15% Similarity=0.126 Sum_probs=232.9
Q ss_pred CCccEEEcccCCC-cccCCCc-CCCCccEEEe-CCCCCCcc---------------------------------------
Q 042307 331 KNCTAISLHNCKI-GELVDGL-ECPRLKFFHI-SPREGFIK--------------------------------------- 368 (1314)
Q Consensus 331 ~~l~~l~l~~~~l-~~l~~~~-~~~~L~~L~l-~~~~~~~~--------------------------------------- 368 (1314)
.+++.|+|+++.+ +.+|+.+ .+++|++|+| ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 6799999999998 5788777 9999999999 66632211
Q ss_pred -------------------------------------cCchhhhCCCcccEEEecCCcCCC------------------C
Q 042307 369 -------------------------------------IPDNFFTRLTELRVLDFTDMHLLS------------------L 393 (1314)
Q Consensus 369 -------------------------------------~~~~~f~~l~~L~~L~Ls~n~~~~------------------l 393 (1314)
+|.. |.++++|++|+|++|.+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 4444 3666777777777776665 6
Q ss_pred Ccccc--cCccCcEEEcCCCcCCC--ccccCCCCCCCEEEccCcc-Ccc--cchhhcCCC-------CCCEEeeccCCCC
Q 042307 394 PSSLH--LLVNLRTLCLDNGVLGD--VAVIGELKQLEILSFQGSN-IEQ--LPREIGQLT-------RLRSLNLSSCYQL 459 (1314)
Q Consensus 394 p~~~~--~l~~L~~L~L~~~~~~~--~~~~~~L~~L~~L~L~~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~~l 459 (1314)
|+.++ ++++|++|+|++|.+.. +..++++++|++|++++|+ ++. +|..+++++ +|++|++++| .+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cC
Confidence 66655 67777777777666433 2556667777777777765 653 666555554 6777777766 45
Q ss_pred Cccch-hhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEE
Q 042307 460 KAISS-NVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFI 538 (1314)
Q Consensus 460 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~ 538 (1314)
..+|. ..++++++|++|++++|.+. ..+ .++.+++|+.|++++|.+..+|..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-------------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~------------- 613 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-------------HLE-AFGTNVKLTDLKLDYNQIEEIPED------------- 613 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-------------BCC-CCCTTSEESEEECCSSCCSCCCTT-------------
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-------------cch-hhcCCCcceEEECcCCccccchHH-------------
Confidence 56665 12666777777777666652 122 556666677777766666655543
Q ss_pred ccccCCCCCCccceEEEeecCCccchhhHHHhhhcc-cceeecccccCchhhccccccCCCCCCceEEeecCCCceEecc
Q 042307 539 GDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKG-LEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCIND 617 (1314)
Q Consensus 539 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~ 617 (1314)
+..+++ |+.|+++++... .++..+.....++|+.|++++|.....++.
T Consensus 614 ------------------------------l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 614 ------------------------------FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp ------------------------------SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred ------------------------------HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 233455 666666665533 333333222234477777777764322111
Q ss_pred CCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecCCCcccccchhh------hccCCCccEEEEEec
Q 042307 618 STELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSI------SRGLPQLQTIEVIAC 691 (1314)
Q Consensus 618 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~------~~~l~~L~~L~l~~~ 691 (1314)
-+........++|+.|+++++. +..++.. ....+++|+.|++++| .++.+|.... ..++++|+.|++++|
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~--~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNE-IQKFPTE--LFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSC-CCSCCHH--HHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred chhhhccccCCCcCEEEccCCc-CCccCHH--HHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC
Confidence 0000111123467777777643 2222111 0124677777777775 4555553211 112237788888776
Q ss_pred cCcceeeeeccccccCCcccccce--eccccceeeccCCCcccccc-cccccCccceeeecccccc--cccCCCCCCccc
Q 042307 692 KSMKHIFVVGREDDINNTEVVDKI--EFSQLRKLTLKSLPQLRSFC-SVVAFPNLETLKLSAINSE--TIWHNQLPAMSS 766 (1314)
Q Consensus 692 ~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~ 766 (1314)
... .++. .+. .+++|+.|+++++.- +.+| .+..+++|+.|++++|... .-..+.+|..+.
T Consensus 739 ~L~-~lp~-------------~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 739 KLT-SLSD-------------DFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp CCC-CCCG-------------GGSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred CCc-cchH-------------HhhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 432 3331 222 577788888877643 3344 3556788888888764310 001134566677
Q ss_pred ccCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccccc
Q 042307 767 CIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMD 807 (1314)
Q Consensus 767 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 807 (1314)
.+++|+.|++++| .+..++.. . .++|+.|++++|+.
T Consensus 804 ~L~~L~~L~Ls~N-~L~~Ip~~-l---~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 804 TCPSLIQLQIGSN-DIRKVDEK-L---TPQLYILDIADNPN 839 (876)
T ss_dssp GCSSCCEEECCSS-CCCBCCSC-C---CSSSCEEECCSCTT
T ss_pred cCCCCCEEECCCC-CCCccCHh-h---cCCCCEEECCCCCC
Confidence 7889999999886 55776432 1 26889999988864
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=6.6e-26 Score=276.15 Aligned_cols=141 Identities=19% Similarity=0.277 Sum_probs=99.4
Q ss_pred cEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccC
Q 042307 356 KFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQG 432 (1314)
Q Consensus 356 ~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~ 432 (1314)
++|++++|.+. .+|..++ ++|++|++++|.+..++ ..|.++++|++|++++|.++.+ ..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 56778877653 6776653 77888888888887764 5677888888888888877764 5677888888888888
Q ss_pred ccCcccchhhcCCCCCCEEeeccCCCCCc--cchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCC-
Q 042307 433 SNIEQLPREIGQLTRLRSLNLSSCYQLKA--ISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSL- 509 (1314)
Q Consensus 433 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L- 509 (1314)
|.++.+|.. .+++|++|++++| .+.. +|.. ++++++|++|++++|.+. . ..+..+++|
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~------------~---~~~~~l~~L~ 139 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLE------------K---SSVLPIAHLN 139 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCC------------G---GGGGGGTTSC
T ss_pred CceeecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccc------------h---hhccccccce
Confidence 888777765 7788888888877 4544 3444 777888888888777664 1 223444444
Q ss_pred -cEEEeEecCC
Q 042307 510 -NTLEIQVRDP 519 (1314)
Q Consensus 510 -~~L~l~~~~~ 519 (1314)
+.|+++++.+
T Consensus 140 L~~L~l~~n~l 150 (520)
T 2z7x_B 140 ISKVLLVLGET 150 (520)
T ss_dssp EEEEEEEECTT
T ss_pred eeEEEeecccc
Confidence 7777776654
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=8.2e-27 Score=288.62 Aligned_cols=415 Identities=15% Similarity=0.166 Sum_probs=283.3
Q ss_pred CCccEEEcccCCC-cccCCCc-CCCCccEEEeCCCCC-------------------------------------------
Q 042307 331 KNCTAISLHNCKI-GELVDGL-ECPRLKFFHISPREG------------------------------------------- 365 (1314)
Q Consensus 331 ~~l~~l~l~~~~l-~~l~~~~-~~~~L~~L~l~~~~~------------------------------------------- 365 (1314)
.+++.|+++++.+ +.+|+.+ .+++|++|++++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5799999999998 5788777 999999999998842
Q ss_pred ----------------------------------CcccCchhhhCCCcccEEEecCCcCCC------------------C
Q 042307 366 ----------------------------------FIKIPDNFFTRLTELRVLDFTDMHLLS------------------L 393 (1314)
Q Consensus 366 ----------------------------------~~~~~~~~f~~l~~L~~L~Ls~n~~~~------------------l 393 (1314)
...+|.. |+++++|++|+|++|.+.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 1126665 5889999999999999997 9
Q ss_pred Ccccc--cCccCcEEEcCCCcCCC--ccccCCCCCCCEEEccCcc-Cc--ccchhhcCC------CCCCEEeeccCCCCC
Q 042307 394 PSSLH--LLVNLRTLCLDNGVLGD--VAVIGELKQLEILSFQGSN-IE--QLPREIGQL------TRLRSLNLSSCYQLK 460 (1314)
Q Consensus 394 p~~~~--~l~~L~~L~L~~~~~~~--~~~~~~L~~L~~L~L~~~~-i~--~lp~~i~~L------~~L~~L~L~~~~~l~ 460 (1314)
|+.++ ++++|++|++++|.+.. +..++++++|++|++++|. ++ .+|..++++ ++|++|++++| .+.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC
Confidence 99988 99999999999998654 3789999999999999997 88 489988887 99999999998 667
Q ss_pred ccch-hhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEc
Q 042307 461 AISS-NVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIG 539 (1314)
Q Consensus 461 ~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~ 539 (1314)
.+|. ..++++++|++|++++|.+. +..+ .+..+++|+.|++++|.+..+|.++
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~------------g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l------------- 372 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLE------------GKLP-AFGSEIKLASLNLAYNQITEIPANF------------- 372 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCE------------EECC-CCEEEEEESEEECCSSEEEECCTTS-------------
T ss_pred ccCchhhhccCCCCCEEeCcCCcCc------------cchh-hhCCCCCCCEEECCCCccccccHhh-------------
Confidence 8887 23899999999999999875 3455 7788889999999988877777653
Q ss_pred cccCCCCCCcc-ceEEEeecCCccchhhHHHhhh--cccceeecccccCchhhccccc-----cCCCCCCceEEeecCCC
Q 042307 540 DEWNWPDSYEN-QRILKLKLNASICLKDEFFMQL--KGLEELWLDEVQGVENVVYELD-----REGFPSLKHLHIQNNPY 611 (1314)
Q Consensus 540 ~~~~~~~~~~~-l~~l~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~ 611 (1314)
..... ++.++++.+....++ ..+..+ ++|+.|+++++......+..+. ...+++|++|++++|..
T Consensus 373 ------~~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 373 ------CGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp ------EEECTTCCEEECCSSCCSSCC-SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred ------hhhcccCcEEEccCCcCcccc-hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 12233 555666666555333 233332 3677777777665443333221 01355788888887764
Q ss_pred ceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCc-----cccccccceeEEecCCCcccccchhhhccCCCccEE
Q 042307 612 LLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLR-----AESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTI 686 (1314)
Q Consensus 612 ~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 686 (1314)
. .++. .....+++|+.|+++++ .++.++...+. ...+++|+.|++++| .++.+|..-....+++|++|
T Consensus 446 ~-~lp~----~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 446 S-KFPK----ELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGI 518 (636)
T ss_dssp C-SCCT----HHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEE
T ss_pred C-cCCH----HHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEE
Confidence 3 1110 01223677888888774 33333322111 112338888888886 45566632111378889999
Q ss_pred EEEeccCcceeeeeccccccCCcccccceeccccceeeccCCC------cccccc-cccccCccceeeecccccccccCC
Q 042307 687 EVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLP------QLRSFC-SVVAFPNLETLKLSAINSETIWHN 759 (1314)
Q Consensus 687 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~ 759 (1314)
++++|.... ++ ..+..+++|+.|+++++. ....+| .+..+++|+.|++++|.+..+
T Consensus 519 ~Ls~N~l~~-ip-------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i--- 581 (636)
T 4eco_A 519 DLSYNSFSK-FP-------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV--- 581 (636)
T ss_dssp ECCSSCCSS-CC-------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC---
T ss_pred ECCCCCCCC-cC-------------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc---
Confidence 998876443 33 134568889999886533 233444 356788999999999988544
Q ss_pred CCCCcccccCCccEEEEccCCCccccCcH----HHHHHh---hcccEeeeccccccc
Q 042307 760 QLPAMSSCIQNLTRLIVHGCSNLKYLFST----SLVRSL---MQLQHLEIRKCMDLE 809 (1314)
Q Consensus 760 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~----~~~~~l---~~L~~L~l~~c~~l~ 809 (1314)
|..+ .++|+.|++++|+ +..+... ...... ...+..++.+|+.++
T Consensus 582 --p~~~--~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 582 --NEKI--TPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp --CSCC--CTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred --CHhH--hCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 3322 2789999999964 4443211 111211 122456788898774
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=7.3e-26 Score=282.90 Aligned_cols=373 Identities=16% Similarity=0.125 Sum_probs=210.5
Q ss_pred CCccEEEeCCCCCCcccCchhhhCCCcccEEEe-cCCcCCCC-Ccc----------------------------------
Q 042307 353 PRLKFFHISPREGFIKIPDNFFTRLTELRVLDF-TDMHLLSL-PSS---------------------------------- 396 (1314)
Q Consensus 353 ~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~L-s~n~~~~l-p~~---------------------------------- 396 (1314)
.+++.|+|+++.+.+.+|+.+ +++++|++|+| ++|.+... |-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 479999999999988999875 99999999999 77754211 100
Q ss_pred ---------------c--ccCccCcEEEcCC--CcCCCc-cccCCCCCCCEEEccCccCcc------------------c
Q 042307 397 ---------------L--HLLVNLRTLCLDN--GVLGDV-AVIGELKQLEILSFQGSNIEQ------------------L 438 (1314)
Q Consensus 397 ---------------~--~~l~~L~~L~L~~--~~~~~~-~~~~~L~~L~~L~L~~~~i~~------------------l 438 (1314)
+ .....++.+.+.. |.+..+ ..++++++|++|+|++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 1111222222222 344434 568888888888888888887 8
Q ss_pred chhhc--CCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCc-cccccccCCcccccc-cCcc-------cccCCC
Q 042307 439 PREIG--QLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTF-IQWETEGQSSSERSR-ASLH-------ELKHLS 507 (1314)
Q Consensus 439 p~~i~--~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~-~~~~-------~l~~l~ 507 (1314)
|..++ ++++|++|+|++|.....+|.. ++++++|++|++++|. +. + ..+. .+..++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~ls------------g~~iP~~i~~L~~~~~~l~ 548 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGIS------------AAQLKADWTRLADDEDTGP 548 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSC------------HHHHHHHHHHHHHCTTTTT
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcc------------cccchHHHHhhhhcccccC
Confidence 88877 8888888888888667777765 8888888888888886 54 2 2232 334455
Q ss_pred CCcEEEeEecCCCCCCC--cccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccC
Q 042307 508 SLNTLEIQVRDPKVLPK--GFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQG 585 (1314)
Q Consensus 508 ~L~~L~l~~~~~~~~~~--~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 585 (1314)
+|+.|++++|.+..+|. .+ ....+++.++++.|.+..++ .+..+++|+.|+++++..
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l-------------------~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASL-------------------QKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHH-------------------TTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCC
T ss_pred CccEEEeeCCcCCccCChhhh-------------------hcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCcc
Confidence 88888888888776665 22 12233344444444444222 344556666666665543
Q ss_pred chhhccccccCCCCC-CceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccc--cccccceeEE
Q 042307 586 VENVVYELDREGFPS-LKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAE--SFIRLRNLKV 662 (1314)
Q Consensus 586 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~l~~L~~L~l 662 (1314)
. .++..+ ..+++ |++|++++|... .++ .+......++|+.|+++++.--..++....... ..++|+.|++
T Consensus 608 ~-~lp~~l--~~l~~~L~~L~Ls~N~L~-~lp---~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 608 E-EIPEDF--CAFTDQVEGLGFSHNKLK-YIP---NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp S-CCCTTS--CEECTTCCEEECCSSCCC-SCC---SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred c-cchHHH--hhccccCCEEECcCCCCC-cCc---hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 3 222222 33555 666666666532 221 111122223355565555322111110000011 2235555555
Q ss_pred ecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCcccccccccccCc
Q 042307 663 ESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAFPN 742 (1314)
Q Consensus 663 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 742 (1314)
++| .++.+|. ..+..+++|+.|++++|..- .++.. .+.. . .+....+++
T Consensus 681 s~N-~L~~lp~-~~~~~l~~L~~L~Ls~N~L~-~ip~~---------------~~~~-----------~--~~~l~nl~~ 729 (876)
T 4ecn_A 681 SYN-EIQKFPT-ELFATGSPISTIILSNNLMT-SIPEN---------------SLKP-----------K--DGNYKNTYL 729 (876)
T ss_dssp CSS-CCCSCCH-HHHHTTCCCSEEECCSCCCS-CCCTT---------------SSSC-----------T--TSCCTTGGG
T ss_pred cCC-cCCccCH-HHHccCCCCCEEECCCCcCC-ccChH---------------Hhcc-----------c--cccccccCC
Confidence 553 2333332 22334555555555554211 22100 0000 0 000112347
Q ss_pred cceeeecccccccccCCCCCCccc--ccCCccEEEEccCCCccccCcHHHHHHhhcccEeeecccc
Q 042307 743 LETLKLSAINSETIWHNQLPAMSS--CIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCM 806 (1314)
Q Consensus 743 L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 806 (1314)
|+.|++++|.+..+ |..+. .+++|+.|++++| .++.++ ..+..+++|+.|++++++
T Consensus 730 L~~L~Ls~N~L~~l-----p~~l~~~~l~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 730 LTTIDLRFNKLTSL-----SDDFRATTLPYLSNMDVSYN-CFSSFP--TQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCEEECCSSCCCCC-----CGGGSTTTCTTCCEEECCSS-CCSSCC--CGGGGCTTCCEEECCCCB
T ss_pred ccEEECCCCCCccc-----hHHhhhccCCCcCEEEeCCC-CCCccc--hhhhcCCCCCEEECCCCC
Confidence 88888888776533 33343 6788999999885 666653 235678888888888765
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=3.9e-26 Score=282.57 Aligned_cols=374 Identities=13% Similarity=0.112 Sum_probs=203.8
Q ss_pred CCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC-------------CCCc---------------------ccc
Q 042307 353 PRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL-------------SLPS---------------------SLH 398 (1314)
Q Consensus 353 ~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~-------------~lp~---------------------~~~ 398 (1314)
.+++.|+++++...+.+|+.+ +++++|++|+|++|.+. .+|. .+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 478999999999988999765 99999999999999652 1111 000
Q ss_pred -------------------cCccCcEEEcC--CCcCCCc-cccCCCCCCCEEEccCccCcc------------------c
Q 042307 399 -------------------LLVNLRTLCLD--NGVLGDV-AVIGELKQLEILSFQGSNIEQ------------------L 438 (1314)
Q Consensus 399 -------------------~l~~L~~L~L~--~~~~~~~-~~~~~L~~L~~L~L~~~~i~~------------------l 438 (1314)
....++.+.+. .|.++.+ ..++++++|++|+|++|.++. +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 00111111111 2333333 557777888888888887776 7
Q ss_pred chhhc--CCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCc-cccccccCCcccccc-cCcccccCC------CC
Q 042307 439 PREIG--QLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTF-IQWETEGQSSSERSR-ASLHELKHL------SS 508 (1314)
Q Consensus 439 p~~i~--~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~-~~~~~l~~l------~~ 508 (1314)
|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +. + ..+..++.+ ++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~------------~~~lp~~~~~L~~~~~l~~ 306 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGIS------------GEQLKDDWQALADAPVGEK 306 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSC------------HHHHHHHHHHHHHSGGGGT
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCc------------cccchHHHHhhhccccCCC
Confidence 77777 7888888888877656667755 7778888888887776 54 2 344444444 77
Q ss_pred CcEEEeEecCCCCCCC--cccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCc
Q 042307 509 LNTLEIQVRDPKVLPK--GFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGV 586 (1314)
Q Consensus 509 L~~L~l~~~~~~~~~~--~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 586 (1314)
|++|++++|.+..+|. .+ ....+++.++++.+.+....+ .+..+++|++|+++++...
T Consensus 307 L~~L~L~~n~l~~ip~~~~l-------------------~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 307 IQIIYIGYNNLKTFPVETSL-------------------QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp CCEEECCSSCCSSCCCHHHH-------------------TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred CCEEECCCCcCCccCchhhh-------------------ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence 8888887777766665 22 122334444444444442222 4455566666666665433
Q ss_pred hhhccccccCCCCC-CceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCC----CccccccccceeE
Q 042307 587 ENVVYELDREGFPS-LKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQ----LRAESFIRLRNLK 661 (1314)
Q Consensus 587 ~~~~~~~~~~~~~~-L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~l~~L~~L~ 661 (1314)
.++..+ ..+++ |++|++++|... .++ .......+++|+.|+++++.--...+... .....+++|+.|+
T Consensus 367 -~lp~~l--~~l~~~L~~L~Ls~N~l~-~lp---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 367 -EIPANF--CGFTEQVENLSFAHNKLK-YIP---NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp -ECCTTS--EEECTTCCEEECCSSCCS-SCC---SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred -cccHhh--hhhcccCcEEEccCCcCc-ccc---hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 222222 33555 777777666533 222 11222223456666666533211111100 0001344566666
Q ss_pred EecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCcccccccccccC
Q 042307 662 VESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAFP 741 (1314)
Q Consensus 662 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 741 (1314)
+++| .++.++. ..+..+++|++|++++|... .++.. .+..+. +....++
T Consensus 440 Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~l~-~i~~~---------------~~~~~~-------------~~~~~l~ 488 (636)
T 4eco_A 440 LSNN-QISKFPK-ELFSTGSPLSSINLMGNMLT-EIPKN---------------SLKDEN-------------ENFKNTY 488 (636)
T ss_dssp CCSS-CCCSCCT-HHHHTTCCCSEEECCSSCCS-BCCSS---------------SSEETT-------------EECTTGG
T ss_pred CcCC-ccCcCCH-HHHccCCCCCEEECCCCCCC-CcCHH---------------Hhcccc-------------ccccccC
Confidence 6664 3344432 23344566666666555422 22200 000000 0011233
Q ss_pred ccceeeecccccccccCCCCCCccc--ccCCccEEEEccCCCccccCcHHHHHHhhcccEeeecccc
Q 042307 742 NLETLKLSAINSETIWHNQLPAMSS--CIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCM 806 (1314)
Q Consensus 742 ~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 806 (1314)
+|+.|++++|.+..+ +..+. .+++|+.|++++| .++.++ ..+..+++|++|+++++.
T Consensus 489 ~L~~L~Ls~N~l~~l-----p~~~~~~~l~~L~~L~Ls~N-~l~~ip--~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 489 LLTSIDLRFNKLTKL-----SDDFRATTLPYLVGIDLSYN-SFSKFP--TQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp GCCEEECCSSCCCBC-----CGGGSTTTCTTCCEEECCSS-CCSSCC--CGGGGCSSCCEEECCSCB
T ss_pred CccEEECcCCcCCcc-----ChhhhhccCCCcCEEECCCC-CCCCcC--hhhhcCCCCCEEECCCCc
Confidence 666666666665532 33332 5677777777774 555542 234567777777776654
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.8e-24 Score=256.64 Aligned_cols=348 Identities=20% Similarity=0.259 Sum_probs=247.2
Q ss_pred ccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEE
Q 042307 328 DTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLC 407 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~ 407 (1314)
..+++++.+++.++.+..+|....+++|++|++++|.+. .+++ |.++++|++|++++|.+..++. +.++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 446789999999999999987668999999999999754 4454 6999999999999999998877 99999999999
Q ss_pred cCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccc
Q 042307 408 LDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWET 487 (1314)
Q Consensus 408 L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (1314)
+++|.+..+..++++++|++|++++|.+..+|. ++.+++|++|++++ .+..++. ++++++|++|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC---
Confidence 999999988779999999999999999998874 99999999999975 4556654 899999999999999874
Q ss_pred ccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhH
Q 042307 488 EGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDE 567 (1314)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 567 (1314)
.+..+..+++|++|+++++.+...+.
T Consensus 191 -----------~~~~l~~l~~L~~L~l~~n~l~~~~~------------------------------------------- 216 (466)
T 1o6v_A 191 -----------DISVLAKLTNLESLIATNNQISDITP------------------------------------------- 216 (466)
T ss_dssp -----------CCGGGGGCTTCSEEECCSSCCCCCGG-------------------------------------------
T ss_pred -----------CChhhccCCCCCEEEecCCccccccc-------------------------------------------
Confidence 12357889999999999888765543
Q ss_pred HHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcC
Q 042307 568 FFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCS 647 (1314)
Q Consensus 568 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 647 (1314)
++.+++|+.|+++++.... + ..+ ..+++|++|++++|.... ......+++|+.|+++++. +..+.
T Consensus 217 -~~~l~~L~~L~l~~n~l~~-~-~~l--~~l~~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l~~n~-l~~~~-- 281 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKD-I-GTL--ASLTNLTDLDLANNQISN-------LAPLSGLTKLTELKLGANQ-ISNIS-- 281 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCC-C-GGG--GGCTTCSEEECCSSCCCC-------CGGGTTCTTCSEEECCSSC-CCCCG--
T ss_pred -ccccCCCCEEECCCCCccc-c-hhh--hcCCCCCEEECCCCcccc-------chhhhcCCCCCEEECCCCc-cCccc--
Confidence 1223445555555443221 1 111 335556666666554321 1123445566666665532 22111
Q ss_pred CCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccC
Q 042307 648 QLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKS 727 (1314)
Q Consensus 648 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 727 (1314)
+...+++|+.|++++| .++.+++ +..+++|+.|++++|.... +. ....+++|+.|++++
T Consensus 282 --~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~-~~--------------~~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 282 --PLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNNISD-IS--------------PVSSLTKLQRLFFYN 340 (466)
T ss_dssp --GGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSCCSC-CG--------------GGGGCTTCCEEECCS
T ss_pred --cccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCcCCC-ch--------------hhccCccCCEeECCC
Confidence 1445667777777775 3444432 4567777777777764322 11 123577777888777
Q ss_pred CCcccccccccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCcccc
Q 042307 728 LPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYL 785 (1314)
Q Consensus 728 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 785 (1314)
| .++.++.+..+++|+.|++++|.+.... + +..+++|+.|++++| .++.+
T Consensus 341 n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~--~~~l~~L~~L~l~~n-~~~~~ 390 (466)
T 1o6v_A 341 N-KVSDVSSLANLTNINWLSAGHNQISDLT----P--LANLTRITQLGLNDQ-AWTNA 390 (466)
T ss_dssp S-CCCCCGGGTTCTTCCEEECCSSCCCBCG----G--GTTCTTCCEEECCCE-EEECC
T ss_pred C-ccCCchhhccCCCCCEEeCCCCccCccc----h--hhcCCCCCEEeccCC-cccCC
Confidence 6 4555566677888888888888765442 2 456788888988885 45544
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.1e-24 Score=267.35 Aligned_cols=144 Identities=21% Similarity=0.283 Sum_probs=89.6
Q ss_pred ccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCC
Q 042307 333 CTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~ 411 (1314)
.++++++++.+..+|..+. +++++|++++|.+ ..+++..|.++++|++|+|++|.++.+ |..|.++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSI-SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCC-CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCc-cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3677777777777776543 6677777777764 344444457777777777777777665 555666777777777777
Q ss_pred cCCCccccCCCCCCCEEEccCccCccc--chhhcCCCCCCEEeeccCCCCCccchhhhcCCCCC--cEEEcCCCcc
Q 042307 412 VLGDVAVIGELKQLEILSFQGSNIEQL--PREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQL--EELYLGDTFI 483 (1314)
Q Consensus 412 ~~~~~~~~~~L~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L--~~L~l~~~~~ 483 (1314)
.++.++.. .+++|++|++++|.++.+ |..++++++|++|++++| .+.... +..+++| ++|++++|.+
T Consensus 111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 66655333 666677777777666654 356666666666666665 333321 3333333 6666666554
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=7.8e-24 Score=259.72 Aligned_cols=435 Identities=17% Similarity=0.126 Sum_probs=250.8
Q ss_pred CCCccccCcccCCCccEEEcccCCCcccCC-Cc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcc
Q 042307 319 APPRELLDRDTLKNCTAISLHNCKIGELVD-GL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSS 396 (1314)
Q Consensus 319 ~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~ 396 (1314)
......| ....+++++|++++|.+..++. .+ .+++|++|++++|.+. .++++.|.++++|++|+|++|.++.+|..
T Consensus 41 ~~L~~ip-~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 118 (562)
T 3a79_B 41 RNLTHVP-KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC 118 (562)
T ss_dssp SCCCSCC-TTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred CCCccCC-CCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence 3344433 3456899999999999998875 34 8999999999999864 45555679999999999999999999887
Q ss_pred cccCccCcEEEcCCCcCCCc---cccCCCCCCCEEEccCccCcccchhhcCCCCC--CEEeeccCCC--CCccchhhhcC
Q 042307 397 LHLLVNLRTLCLDNGVLGDV---AVIGELKQLEILSFQGSNIEQLPREIGQLTRL--RSLNLSSCYQ--LKAISSNVISN 469 (1314)
Q Consensus 397 ~~~l~~L~~L~L~~~~~~~~---~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L--~~L~L~~~~~--l~~~~~~~l~~ 469 (1314)
.+++|++|++++|.+..+ ..++++++|++|++++|.++. ..++.+++| ++|++++|.. ....|.. +..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~ 193 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETES-LQI 193 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEE
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCccc-ccc
Confidence 899999999999998763 689999999999999999875 345666666 9999999843 2333433 655
Q ss_pred CC--CCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCC--CCCCc----ccccccceeEEEEccc
Q 042307 470 LS--QLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK--VLPKG----FLSQKLKRYKVFIGDE 541 (1314)
Q Consensus 470 l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~----~~~~~L~~l~~~~~~~ 541 (1314)
+. .| ++++++|.+... .....+..+++|+.|+++.+... .++.. ....+++.+.+.....
T Consensus 194 l~~~~l-~l~l~~n~~~~~-----------~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 194 PNTTVL-HLVFHPNSLFSV-----------QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCEEEE-EEEECSSSCCCC-----------CCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cCcceE-EEEecCccchhh-----------hhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 44 22 345555544310 11122334455555555544210 00000 0111222222211110
Q ss_pred c--------CCCCCCccceEEEeecCCccchhhHHH-----hhhcccceeecccccCchhhccc-c-ccCCCCCCceEEe
Q 042307 542 W--------NWPDSYENQRILKLKLNASICLKDEFF-----MQLKGLEELWLDEVQGVENVVYE-L-DREGFPSLKHLHI 606 (1314)
Q Consensus 542 ~--------~~~~~~~~l~~l~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~-~-~~~~~~~L~~L~l 606 (1314)
. .+. ...+++.++++.+......+..+ ..++.|+.+++..+.. .++.. + .....++|++|++
T Consensus 262 ~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 262 TWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp CHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred cHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 0 000 01144555555444332111111 2233333333322211 00000 0 0001135666666
Q ss_pred ecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecCCCcccccch-hhhccCCCccE
Q 042307 607 QNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSF-SISRGLPQLQT 685 (1314)
Q Consensus 607 ~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~ 685 (1314)
++|.... ......+++|++|+++++. ++... ......+++|+.|+++++ .++.++.. ..+..+++|++
T Consensus 339 ~~n~~~~-------~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 339 SDTPFIH-------MVCPPSPSSFTFLNFTQNV-FTDSV--FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp ESSCCCC-------CCCCSSCCCCCEEECCSSC-CCTTT--TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCE
T ss_pred cCCCccc-------ccCccCCCCceEEECCCCc-cccch--hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCE
Confidence 6665321 1111445666777766643 22211 112455677777777774 45554321 23566777888
Q ss_pred EEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCccccccccccc-CccceeeecccccccccCCCCCCc
Q 042307 686 IEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAF-PNLETLKLSAINSETIWHNQLPAM 764 (1314)
Q Consensus 686 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 764 (1314)
|++++|.....++. .....+++|+.|+++++.-....+. .+ ++|+.|++++|.+..+ |..
T Consensus 408 L~l~~N~l~~~~~~------------~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~~L~~L~L~~N~l~~i-----p~~ 468 (562)
T 3a79_B 408 LDVSLNSLNSHAYD------------RTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIMSI-----PKD 468 (562)
T ss_dssp EECTTSCCBSCCSS------------CCCCCCTTCCEEECCSSCCCGGGGS--SCCTTCSEEECCSSCCCCC-----CTT
T ss_pred EECCCCcCCCccCh------------hhhcCcccCCEEECCCCCCCcchhh--hhcCcCCEEECCCCcCccc-----Chh
Confidence 88877664332321 0123467788888877653333221 23 6888888888877643 444
Q ss_pred ccccCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccccc
Q 042307 765 SSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMD 807 (1314)
Q Consensus 765 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 807 (1314)
+..+++|+.|++++ ++++.++. ..+..+++|+.|++++++-
T Consensus 469 ~~~l~~L~~L~L~~-N~l~~l~~-~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 469 VTHLQALQELNVAS-NQLKSVPD-GVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTSSCCCSEEECCS-SCCCCCCT-TSTTTCTTCCCEECCSCCB
T ss_pred hcCCCCCCEEECCC-CCCCCCCH-HHHhcCCCCCEEEecCCCc
Confidence 44678888888888 46777643 3467788888888888753
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=5.7e-24 Score=254.01 Aligned_cols=344 Identities=20% Similarity=0.284 Sum_probs=268.9
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCccccCCCCCCCEEEc
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSF 430 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L 430 (1314)
.+++++.|++.++.+ ..+|. |..+++|++|++++|.+..+|. +.++++|++|++++|.+..+..++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i-~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI-KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCC-CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCC-ccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 467899999998874 45664 5889999999999999999877 9999999999999999988766999999999999
Q ss_pred cCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCc
Q 042307 431 QGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLN 510 (1314)
Q Consensus 431 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 510 (1314)
++|.++.+|. ++++++|++|++++| .+..++. ++++++|++|+++++ +. ....+.++++|+
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~-~~--------------~~~~~~~l~~L~ 180 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQ-VT--------------DLKPLANLTTLE 180 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEES-CC--------------CCGGGTTCTTCC
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCc-cc--------------CchhhccCCCCC
Confidence 9999998876 899999999999998 6777764 889999999998632 21 223478899999
Q ss_pred EEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchhhc
Q 042307 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVENVV 590 (1314)
Q Consensus 511 ~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 590 (1314)
.|+++++.+..++ .+..+++|++|+++++.......
T Consensus 181 ~L~l~~n~l~~~~--------------------------------------------~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 181 RLDISSNKVSDIS--------------------------------------------VLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEECCSSCCCCCG--------------------------------------------GGGGCTTCSEEECCSSCCCCCGG
T ss_pred EEECcCCcCCCCh--------------------------------------------hhccCCCCCEEEecCCccccccc
Confidence 9999988765432 13456889999998876433222
Q ss_pred cccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecCCCccc
Q 042307 591 YELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTH 670 (1314)
Q Consensus 591 ~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 670 (1314)
...+++|++|++++|... .......+++|+.|+++++. +... .+...+++|+.|++++| .++.
T Consensus 217 ----~~~l~~L~~L~l~~n~l~-------~~~~l~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~l~~n-~l~~ 279 (466)
T 1o6v_A 217 ----LGILTNLDELSLNGNQLK-------DIGTLASLTNLTDLDLANNQ-ISNL----APLSGLTKLTELKLGAN-QISN 279 (466)
T ss_dssp ----GGGCTTCCEEECCSSCCC-------CCGGGGGCTTCSEEECCSSC-CCCC----GGGTTCTTCSEEECCSS-CCCC
T ss_pred ----ccccCCCCEEECCCCCcc-------cchhhhcCCCCCEEECCCCc-cccc----hhhhcCCCCCEEECCCC-ccCc
Confidence 245899999999998742 22345678999999999864 2222 22667899999999996 5556
Q ss_pred ccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCcccccccccccCccceeeecc
Q 042307 671 IFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSA 750 (1314)
Q Consensus 671 l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 750 (1314)
+++ +..+++|++|++++|... .++ .+..+++|+.|++++|. ++..+.+..+++|+.|++++
T Consensus 280 ~~~---~~~l~~L~~L~L~~n~l~-~~~--------------~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 280 ISP---LAGLTALTNLELNENQLE-DIS--------------PISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYN 340 (466)
T ss_dssp CGG---GTTCTTCSEEECCSSCCS-CCG--------------GGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCS
T ss_pred ccc---ccCCCccCeEEcCCCccc-Cch--------------hhcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCC
Confidence 543 678999999999987532 222 24578999999999985 55555577899999999999
Q ss_pred cccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccccc
Q 042307 751 INSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMD 807 (1314)
Q Consensus 751 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 807 (1314)
|.+..+ ..+..+++|+.|++++| .+..+.+ +..+++|+.|++++|+-
T Consensus 341 n~l~~~------~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 341 NKVSDV------SSLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQAW 387 (466)
T ss_dssp SCCCCC------GGGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEEE
T ss_pred CccCCc------hhhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCcc
Confidence 987654 23556899999999996 5666543 67899999999999853
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4.1e-23 Score=243.45 Aligned_cols=316 Identities=16% Similarity=0.165 Sum_probs=242.0
Q ss_pred ccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEE
Q 042307 328 DTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLC 407 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~ 407 (1314)
..++++++|++++|.+..+|....+++|++|++++|.+.. +| |+.+++|++|++++|.+..+| ++++++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 3578899999999999988854489999999999998543 44 588999999999999999886 88999999999
Q ss_pred cCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccc
Q 042307 408 LDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWET 487 (1314)
Q Consensus 408 L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (1314)
+++|.++.++ ++++++|++|++++|.++.+| ++.+++|++|++++|..++.++ ++.+++|++|++++|.+.
T Consensus 113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~--- 183 (457)
T 3bz5_A 113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT--- 183 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC---
T ss_pred CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc---
Confidence 9999988875 899999999999999999875 8899999999999987777773 778999999999999875
Q ss_pred ccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhH
Q 042307 488 EGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDE 567 (1314)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 567 (1314)
. .+ +..+++|+.|++++|.+..++
T Consensus 184 ---------~-l~--l~~l~~L~~L~l~~N~l~~~~-------------------------------------------- 207 (457)
T 3bz5_A 184 ---------E-LD--VSQNKLLNRLNCDTNNITKLD-------------------------------------------- 207 (457)
T ss_dssp ---------C-CC--CTTCTTCCEEECCSSCCSCCC--------------------------------------------
T ss_pred ---------e-ec--cccCCCCCEEECcCCcCCeec--------------------------------------------
Confidence 1 11 678889999999988876542
Q ss_pred HHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcC
Q 042307 568 FFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCS 647 (1314)
Q Consensus 568 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 647 (1314)
+..+++|+.|+++++.... + + ...+++|++|++++|.... .....+++|+.|++++
T Consensus 208 -l~~l~~L~~L~Ls~N~l~~-i-p---~~~l~~L~~L~l~~N~l~~--------~~~~~l~~L~~L~l~~---------- 263 (457)
T 3bz5_A 208 -LNQNIQLTFLDCSSNKLTE-I-D---VTPLTQLTYFDCSVNPLTE--------LDVSTLSKLTTLHCIQ---------- 263 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSC-C-C---CTTCTTCSEEECCSSCCSC--------CCCTTCTTCCEEECTT----------
T ss_pred -cccCCCCCEEECcCCcccc-c-C---ccccCCCCEEEeeCCcCCC--------cCHHHCCCCCEEeccC----------
Confidence 1235677777777765433 2 1 2567888888888886432 1234577777776554
Q ss_pred CCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccC
Q 042307 648 QLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKS 727 (1314)
Q Consensus 648 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 727 (1314)
.+|+.|++++|..+..+| ...+++|+.|++++|..++.++. ..++|+.|++++
T Consensus 264 -------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~----------------~~~~L~~L~l~~ 316 (457)
T 3bz5_A 264 -------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC----------------QAAGITELDLSQ 316 (457)
T ss_dssp -------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC----------------TTCCCSCCCCTT
T ss_pred -------CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc----------------CCCcceEechhh
Confidence 257778888887766664 24678899999988887777762 345666666665
Q ss_pred CCcccccccccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCcccc
Q 042307 728 LPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYL 785 (1314)
Q Consensus 728 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 785 (1314)
| ++|+.|++++|.+..+ .++.+++|+.|++++ ++++.+
T Consensus 317 ~------------~~L~~L~L~~N~l~~l-------~l~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 317 N------------PKLVYLYLNNTELTEL-------DVSHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp C------------TTCCEEECTTCCCSCC-------CCTTCTTCSEEECCS-SCCCBC
T ss_pred c------------ccCCEEECCCCccccc-------ccccCCcCcEEECCC-CCCCCc
Confidence 4 5677788888877653 144578889999888 466654
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.3e-23 Score=236.83 Aligned_cols=173 Identities=20% Similarity=0.302 Sum_probs=114.4
Q ss_pred cccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEE
Q 042307 327 RDTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTL 406 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L 406 (1314)
...++++++++++++.+..++....+++|++|++++|.+ ..++. |.++++|++|++++|.+..+| .+.++++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i-~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI-TDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCcc-ccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 345677888888888777776544777777777777754 33443 577777777777777777664 46777777777
Q ss_pred EcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccc
Q 042307 407 CLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWE 486 (1314)
Q Consensus 407 ~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (1314)
++++|.+..+..++++++|++|++++|.....+..++.+++|++|++++| .+..++. ++.+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~-- 190 (347)
T 4fmz_A 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE-- 190 (347)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC--
T ss_pred ECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc--
Confidence 77777777665577777777777777744333334777777777777776 4555554 667777777777777653
Q ss_pred cccCCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 487 TEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
.+..+..+++|+.|+++++.+.
T Consensus 191 ------------~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 191 ------------DISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp ------------CCGGGGGCTTCCEEECCSSCCC
T ss_pred ------------ccccccCCCccceeecccCCCC
Confidence 1112556666777766665543
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.7e-23 Score=246.59 Aligned_cols=348 Identities=17% Similarity=0.092 Sum_probs=202.3
Q ss_pred CCCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcc-------------cEEEecCCcCCCCCc
Q 042307 330 LKNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTEL-------------RVLDFTDMHLLSLPS 395 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L-------------~~L~Ls~n~~~~lp~ 395 (1314)
...++.+++++|.++.+|..+ .+++|++|++++|...+.+|..+ +++++| ++|++++|.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 457788888888888888776 78888888888877666677664 666654 788888888777765
Q ss_pred ccccCccCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcE
Q 042307 396 SLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEE 475 (1314)
Q Consensus 396 ~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~ 475 (1314)
. .++|++|++++|.++.++. .+.+|++|++++|.++.+|.. .++|++|++++| .++.+| . ++++++|++
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~-~~~l~~L~~ 157 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLP-E-LQNSSFLKI 157 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCC-C-CTTCTTCCE
T ss_pred C---cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCc-c-cCCCCCCCE
Confidence 3 3577888888877766532 236777777777777766542 257777777776 566676 3 777777777
Q ss_pred EEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEE
Q 042307 476 LYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILK 555 (1314)
Q Consensus 476 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~ 555 (1314)
|++++|.+...+ .. ..+|++|++++|.+..+|......+|+.+.+..+..........+++.++
T Consensus 158 L~l~~N~l~~lp-------------~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~ 221 (454)
T 1jl5_A 158 IDVDNNSLKKLP-------------DL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIV 221 (454)
T ss_dssp EECCSSCCSCCC-------------CC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred EECCCCcCcccC-------------CC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEE
Confidence 777777664211 11 13677777777766666643344455555444333333333334677777
Q ss_pred eecCCccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecc
Q 042307 556 LKLNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSL 635 (1314)
Q Consensus 556 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l 635 (1314)
++.+....++. +..+++|++|+++++.... +. ..+++|++|++++|.... ++ ..+++|+.|++
T Consensus 222 l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~-l~-----~~~~~L~~L~l~~N~l~~-l~--------~~~~~L~~L~l 284 (454)
T 1jl5_A 222 AGNNILEELPE--LQNLPFLTTIYADNNLLKT-LP-----DLPPSLEALNVRDNYLTD-LP--------ELPQSLTFLDV 284 (454)
T ss_dssp CCSSCCSSCCC--CTTCTTCCEEECCSSCCSS-CC-----SCCTTCCEEECCSSCCSC-CC--------CCCTTCCEEEC
T ss_pred CcCCcCCcccc--cCCCCCCCEEECCCCcCCc-cc-----ccccccCEEECCCCcccc-cC--------cccCcCCEEEC
Confidence 77776665442 6677888888887765322 11 234678888888776321 11 12367788888
Q ss_pred cCccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccce
Q 042307 636 SNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKI 715 (1314)
Q Consensus 636 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 715 (1314)
+++. ++.++ ...++|+.|+++++ .++.++. ..++|++|++++|.. ..++ .
T Consensus 285 s~N~-l~~l~------~~~~~L~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N~l-~~lp----------------~ 334 (454)
T 1jl5_A 285 SENI-FSGLS------ELPPNLYYLNASSN-EIRSLCD-----LPPSLEELNVSNNKL-IELP----------------A 334 (454)
T ss_dssp CSSC-CSEES------CCCTTCCEEECCSS-CCSEECC-----CCTTCCEEECCSSCC-SCCC----------------C
T ss_pred cCCc-cCccc------CcCCcCCEEECcCC-cCCcccC-----CcCcCCEEECCCCcc-cccc----------------c
Confidence 7743 22221 11257888888775 4444431 124788888877643 2233 1
Q ss_pred eccccceeeccCCCcccccccccccCccceeeeccccccc
Q 042307 716 EFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSET 755 (1314)
Q Consensus 716 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 755 (1314)
.+++|+.|+++++ .++.++. .+++|+.|++++|.+..
T Consensus 335 ~~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 335 LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSS
T ss_pred cCCcCCEEECCCC-ccccccc--hhhhccEEECCCCCCCc
Confidence 2577888888776 4555655 56788888888887664
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.4e-22 Score=242.41 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=66.3
Q ss_pred EEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC-CC-CcccccCccCcEEEcCCCcC
Q 042307 336 ISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL-SL-PSSLHLLVNLRTLCLDNGVL 413 (1314)
Q Consensus 336 l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~-~l-p~~~~~l~~L~~L~L~~~~~ 413 (1314)
++.+++.+..+|. -.++|++|++++|.+.. +++..|.++++|++|++++|.+. .+ |..|.++++|++|++++|.+
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 4444444444444 12445555555544322 22222355555555555555443 23 33455555555555555554
Q ss_pred CCc--cccCCCCCCCEEEccCccCcc-cchh--hcCCCCCCEEeeccCCCCCcc-chhhhcCCCCCcEEEcCCCcc
Q 042307 414 GDV--AVIGELKQLEILSFQGSNIEQ-LPRE--IGQLTRLRSLNLSSCYQLKAI-SSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 414 ~~~--~~~~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
..+ ..++++++|++|++++|.++. +|.. ++.+++|++|++++| .+..+ |...++++++|++|++++|.+
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcc
Confidence 432 345555555555555555442 2222 455555555555554 23333 222244555555555555544
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.8e-22 Score=237.94 Aligned_cols=310 Identities=20% Similarity=0.181 Sum_probs=209.0
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCccccCCCCCCCEEEc
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSF 430 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L 430 (1314)
.+++|++|++++|.+. .+| . |..+++|++|++++|.++.+| ++++++|++|++++|.++.++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 6788999999998754 455 3 688999999999999999886 889999999999999988875 889999999999
Q ss_pred cCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCc
Q 042307 431 QGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLN 510 (1314)
Q Consensus 431 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 510 (1314)
++|.++.+| ++.+++|++|++++| .++.++ ++++++|++|++++|... +.. .+..+++|+
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~------------~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKI------------TKL--DVTPQTQLT 173 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCC------------CCC--CCTTCTTCC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcc------------ccc--ccccCCcCC
Confidence 999999886 889999999999997 677764 778999999999988542 112 467788999
Q ss_pred EEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchhhc
Q 042307 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVENVV 590 (1314)
Q Consensus 511 ~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 590 (1314)
.|++++|.++.+| +..+++|+.|+++++.....
T Consensus 174 ~L~ls~n~l~~l~---------------------------------------------l~~l~~L~~L~l~~N~l~~~-- 206 (457)
T 3bz5_A 174 TLDCSFNKITELD---------------------------------------------VSQNKLLNRLNCDTNNITKL-- 206 (457)
T ss_dssp EEECCSSCCCCCC---------------------------------------------CTTCTTCCEEECCSSCCSCC--
T ss_pred EEECCCCccceec---------------------------------------------cccCCCCCEEECcCCcCCee--
Confidence 9999888776554 12346677777766543321
Q ss_pred cccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecCCCccc
Q 042307 591 YELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTH 670 (1314)
Q Consensus 591 ~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 670 (1314)
....+++|++|++++|.... . +...+++|+.|+++++ .++.+ +.+.+++|+.|++++
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~-------i-p~~~l~~L~~L~l~~N-~l~~~-----~~~~l~~L~~L~l~~------ 263 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTE-------I-DVTPLTQLTYFDCSVN-PLTEL-----DVSTLSKLTTLHCIQ------ 263 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSC-------C-CCTTCTTCSEEECCSS-CCSCC-----CCTTCTTCCEEECTT------
T ss_pred ---ccccCCCCCEEECcCCcccc-------c-CccccCCCCEEEeeCC-cCCCc-----CHHHCCCCCEEeccC------
Confidence 12557788888888776422 1 1445566666666663 22221 133455555554433
Q ss_pred ccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCcccccccccccCccceeeecc
Q 042307 671 IFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSA 750 (1314)
Q Consensus 671 l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 750 (1314)
.+|+.|++++|.....++ ...+++|+.|++++|+.++.++. ..++|+.|++++
T Consensus 264 ----------n~L~~L~l~~n~~~~~~~---------------~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~ 316 (457)
T 3bz5_A 264 ----------TDLLEIDLTHNTQLIYFQ---------------AEGCRKIKELDVTHNTQLYLLDC--QAAGITELDLSQ 316 (457)
T ss_dssp ----------CCCSCCCCTTCTTCCEEE---------------CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCTT
T ss_pred ----------CCCCEEECCCCccCCccc---------------ccccccCCEEECCCCcccceecc--CCCcceEechhh
Confidence 234455555555444443 12356677777777666655542 334555554443
Q ss_pred cccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccc
Q 042307 751 INSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKC 805 (1314)
Q Consensus 751 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 805 (1314)
+++|+.|++++ ++++.+ + +..+++|+.|+++++
T Consensus 317 -----------------~~~L~~L~L~~-N~l~~l-~---l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 317 -----------------NPKLVYLYLNN-TELTEL-D---VSHNTKLKSLSCVNA 349 (457)
T ss_dssp -----------------CTTCCEEECTT-CCCSCC-C---CTTCTTCSEEECCSS
T ss_pred -----------------cccCCEEECCC-Cccccc-c---cccCCcCcEEECCCC
Confidence 35667777776 355554 1 455666666666654
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.6e-22 Score=230.29 Aligned_cols=304 Identities=17% Similarity=0.235 Sum_probs=210.8
Q ss_pred cCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCccccCCCCCCCEEE
Q 042307 350 LECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILS 429 (1314)
Q Consensus 350 ~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~ 429 (1314)
..+++|++|+++++.. ..++. |..+++|++|++++|.+..+|. +.++++|++|++++|.+..++.++++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i-~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKV-ASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCC-CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCcc-ccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence 3667788888887764 34443 5778888888888888887766 788888888888888887777788888888888
Q ss_pred ccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCC
Q 042307 430 FQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSL 509 (1314)
Q Consensus 430 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 509 (1314)
+++|.++.+|. +..+++|++|++++|.....++. +..+++|++|++++|.+. ....+..+++|
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~--------------~~~~~~~l~~L 179 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK--------------DVTPIANLTDL 179 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC--------------CCGGGGGCTTC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC--------------CchhhccCCCC
Confidence 88888887766 77888888888888766666554 778888888888887764 11126677888
Q ss_pred cEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchhh
Q 042307 510 NTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVENV 589 (1314)
Q Consensus 510 ~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 589 (1314)
+.|+++++.+..++... ....++.+++..+......+ +..+++|++|+++++.....
T Consensus 180 ~~L~l~~n~l~~~~~~~--------------------~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~- 236 (347)
T 4fmz_A 180 YSLSLNYNQIEDISPLA--------------------SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL- 236 (347)
T ss_dssp SEEECTTSCCCCCGGGG--------------------GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred CEEEccCCccccccccc--------------------CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-
Confidence 88888887776655421 22344555666655555443 66677888888877654322
Q ss_pred ccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecCCCcc
Q 042307 590 VYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLT 669 (1314)
Q Consensus 590 ~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 669 (1314)
.. ...+++|++|++++|... .......+++|+.|+++++ .++.+ .....+++|+.|++++|. ++
T Consensus 237 ~~---~~~l~~L~~L~l~~n~l~-------~~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 237 SP---LANLSQLTWLEIGTNQIS-------DINAVKDLTKLKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp GG---GTTCTTCCEEECCSSCCC-------CCGGGTTCTTCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSSC-CC
T ss_pred cc---hhcCCCCCEEECCCCccC-------CChhHhcCCCcCEEEccCC-ccCCC----hhhcCCCCCCEEECcCCc-CC
Confidence 11 256788888888887542 1234556778888888875 33333 225678889999998874 44
Q ss_pred cccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCC
Q 042307 670 HIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLP 729 (1314)
Q Consensus 670 ~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 729 (1314)
..++ ..+..+++|++|++++|+.. .++ ....+++|+.|++++++
T Consensus 301 ~~~~-~~l~~l~~L~~L~L~~n~l~-~~~--------------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 301 NEDM-EVIGGLTNLTTLFLSQNHIT-DIR--------------PLASLSKMDSADFANQV 344 (347)
T ss_dssp GGGH-HHHHTCTTCSEEECCSSSCC-CCG--------------GGGGCTTCSEESSSCC-
T ss_pred CcCh-hHhhccccCCEEEccCCccc-ccc--------------Chhhhhccceeehhhhc
Confidence 4432 34667889999999988733 322 24568899999998875
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=7.7e-23 Score=244.66 Aligned_cols=364 Identities=19% Similarity=0.174 Sum_probs=236.1
Q ss_pred cCCCccEEEcccCCCcccC-CCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcE
Q 042307 329 TLKNCTAISLHNCKIGELV-DGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRT 405 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~ 405 (1314)
..+++++|++++|.+..++ ..+ .+++|++|++++|.....++...|.++++|++|+|++|.+..+ |..|+++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 6689999999999998874 444 9999999999999877788888889999999999999999976 788999999999
Q ss_pred EEcCCCcCCC--ccc--cCCCCCCCEEEccCccCccc-chh-hcCCCCCCEEeeccCCCCCccchhhhcCC--CCCcEEE
Q 042307 406 LCLDNGVLGD--VAV--IGELKQLEILSFQGSNIEQL-PRE-IGQLTRLRSLNLSSCYQLKAISSNVISNL--SQLEELY 477 (1314)
Q Consensus 406 L~L~~~~~~~--~~~--~~~L~~L~~L~L~~~~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l--~~L~~L~ 477 (1314)
|++++|.+.. +.. ++++++|++|++++|.++.+ |.. ++++++|++|++++| .+..+++..+.++ .+|+.|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccc
Confidence 9999999986 433 99999999999999999976 655 899999999999998 5666655546665 6899999
Q ss_pred cCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCc-c----cccccceeEEEEccccCCCCCCccce
Q 042307 478 LGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKG-F----LSQKLKRYKVFIGDEWNWPDSYENQR 552 (1314)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~----~~~~L~~l~~~~~~~~~~~~~~~~l~ 552 (1314)
+++|.+....... ........+..+++|++|++++|.+...... + ...+++.+.+.........
T Consensus 187 l~~n~l~~~~~~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------- 255 (455)
T 3v47_A 187 LSSITLQDMNEYW----LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS------- 255 (455)
T ss_dssp CTTCBCTTCSTTC----TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-------
T ss_pred cccCcccccchhh----ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc-------
Confidence 9999876332210 0011122345667899999998876532211 1 1123333322111100000
Q ss_pred EEEeecCCccchhhHHHhh--hcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCcc
Q 042307 553 ILKLKLNASICLKDEFFMQ--LKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLL 630 (1314)
Q Consensus 553 ~l~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L 630 (1314)
.............+.. .++|+.|+++++.........+ ..+++|++|++++|......+ .....+++|
T Consensus 256 ---~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L 325 (455)
T 3v47_A 256 ---FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDD-----NAFWGLTHL 325 (455)
T ss_dssp ---TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECT-----TTTTTCTTC
T ss_pred ---cchhhhccCcccccccccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccCh-----hHhcCcccC
Confidence 0000000011111111 2567777777665443322223 456777777777776432211 123456777
Q ss_pred ceecccCccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcc
Q 042307 631 ESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTE 710 (1314)
Q Consensus 631 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 710 (1314)
++|+++++. ++.+.. ..+..+++|+.|++++| .++.+++ ..+..+++|++|++++|.. ..++.
T Consensus 326 ~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~~----------- 388 (455)
T 3v47_A 326 LKLNLSQNF-LGSIDS--RMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTNQL-KSVPD----------- 388 (455)
T ss_dssp CEEECCSSC-CCEECG--GGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCC-SCCCT-----------
T ss_pred CEEECCCCc-cCCcCh--hHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCCcc-ccCCH-----------
Confidence 777777742 222211 12455777888888876 4455433 3456678888888887643 22321
Q ss_pred cccceeccccceeeccCCCccc
Q 042307 711 VVDKIEFSQLRKLTLKSLPQLR 732 (1314)
Q Consensus 711 ~~~~~~~~~L~~L~l~~~~~l~ 732 (1314)
..+..+++|+.|++++++-..
T Consensus 389 -~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 389 -GIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp -TTTTTCTTCCEEECCSSCBCC
T ss_pred -hHhccCCcccEEEccCCCccc
Confidence 112457788888888776543
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=6.7e-23 Score=241.45 Aligned_cols=188 Identities=18% Similarity=0.113 Sum_probs=119.9
Q ss_pred CCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC-CCCcccccCccC-------------cEEEcCCCc
Q 042307 347 VDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL-SLPSSLHLLVNL-------------RTLCLDNGV 412 (1314)
Q Consensus 347 ~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~-~lp~~~~~l~~L-------------~~L~L~~~~ 412 (1314)
|+.+..++|++|++++|.+ +.+|.++ +++++|++|++++|.+. .+|..++++.+| ++|++++|.
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccccccccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 3445678899999999987 8899875 99999999999999987 789999998875 999999999
Q ss_pred CCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCc
Q 042307 413 LGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSS 492 (1314)
Q Consensus 413 ~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 492 (1314)
++.++.+ .++|++|++++|.++.+|.. +++|++|++++| .+..++.. .++|++|++++|.+.
T Consensus 83 l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n~l~-------- 144 (454)
T 1jl5_A 83 LSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNNQLE-------- 144 (454)
T ss_dssp CSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSSCCS--------
T ss_pred cccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCCCCC--------
Confidence 8876543 47999999999999998863 489999999997 67766642 268999999999874
Q ss_pred ccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhh
Q 042307 493 SERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQL 572 (1314)
Q Consensus 493 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 572 (1314)
. .+ .++++++|++|++++|.+..+|... .+++.++++.+....++ .+..+
T Consensus 145 ----~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~----------------------~~L~~L~L~~n~l~~l~--~~~~l 194 (454)
T 1jl5_A 145 ----K-LP-ELQNSSFLKIIDVDNNSLKKLPDLP----------------------PSLEFIAAGNNQLEELP--ELQNL 194 (454)
T ss_dssp ----S-CC-CCTTCTTCCEEECCSSCCSCCCCCC----------------------TTCCEEECCSSCCSSCC--CCTTC
T ss_pred ----C-Cc-ccCCCCCCCEEECCCCcCcccCCCc----------------------ccccEEECcCCcCCcCc--cccCC
Confidence 2 33 5889999999999999888776532 13445555555444432 24455
Q ss_pred cccceeeccccc
Q 042307 573 KGLEELWLDEVQ 584 (1314)
Q Consensus 573 ~~L~~L~l~~~~ 584 (1314)
++|++|+++++.
T Consensus 195 ~~L~~L~l~~N~ 206 (454)
T 1jl5_A 195 PFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEECCCCc
Confidence 555555555543
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3.9e-22 Score=232.48 Aligned_cols=305 Identities=16% Similarity=0.198 Sum_probs=178.1
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEEEcCCCcCCCc--cccCCCCCCCE
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEI 427 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~ 427 (1314)
.++++++|+++++. ...+|..+|.++++|++|++++|.+..+| ..|.++++|++|++++|.+..+ ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 55667777776665 34566666677777777777777777664 3677777777777777776654 44677777777
Q ss_pred EEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCC
Q 042307 428 LSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHL 506 (1314)
Q Consensus 428 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l 506 (1314)
|++++|.++.+|.. ++++++|++|++++| .+..+++..++++++|++|++++|.+. .. .+..+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~---~~~~l 185 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT------------HV---DLSLI 185 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCS------------BC---CGGGC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCC------------cc---ccccc
Confidence 77777777777665 367777777777776 555665555677777777777777654 11 24455
Q ss_pred CCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCc
Q 042307 507 SSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGV 586 (1314)
Q Consensus 507 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 586 (1314)
++|+.|+++++.+..++. .++|++|+++++...
T Consensus 186 ~~L~~L~l~~n~l~~~~~-----------------------------------------------~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTLAI-----------------------------------------------PIAVEELDASHNSIN 218 (390)
T ss_dssp TTCSEEECCSSCCSEEEC-----------------------------------------------CSSCSEEECCSSCCC
T ss_pred cccceeecccccccccCC-----------------------------------------------CCcceEEECCCCeee
Confidence 666666666554432110 123344444433211
Q ss_pred hhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEecCC
Q 042307 587 ENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVESCE 666 (1314)
Q Consensus 587 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 666 (1314)
. . ....+++|+.|++++|... .. .....+++|++|+++++
T Consensus 219 ~-~----~~~~~~~L~~L~l~~n~l~------------------------------~~----~~l~~l~~L~~L~Ls~n- 258 (390)
T 3o6n_A 219 V-V----RGPVNVELTILKLQHNNLT------------------------------DT----AWLLNYPGLVEVDLSYN- 258 (390)
T ss_dssp E-E----ECCCCSSCCEEECCSSCCC------------------------------CC----GGGGGCTTCSEEECCSS-
T ss_pred e-c----cccccccccEEECCCCCCc------------------------------cc----HHHcCCCCccEEECCCC-
Confidence 1 0 0112345555555555421 00 11334555666666654
Q ss_pred CcccccchhhhccCCCccEEEEEeccCcceeeeeccccccCCcccccceeccccceeeccCCCcccccc-cccccCccce
Q 042307 667 KLTHIFSFSISRGLPQLQTIEVIACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRSFC-SVVAFPNLET 745 (1314)
Q Consensus 667 ~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~ 745 (1314)
.++.+++ ..+..+++|++|++++|. +..++. ....+++|+.|+++++. ++.++ .+..+++|+.
T Consensus 259 ~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-------------~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 259 ELEKIMY-HPFVKMQRLERLYISNNR-LVALNL-------------YGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLEN 322 (390)
T ss_dssp CCCEEES-GGGTTCSSCCEEECCSSC-CCEEEC-------------SSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSE
T ss_pred cCCCcCh-hHccccccCCEEECCCCc-CcccCc-------------ccCCCCCCCEEECCCCc-ceecCccccccCcCCE
Confidence 3333322 234556667777776654 222221 12346777777777763 33333 2456788888
Q ss_pred eeecccccccccCCCCCCcccccCCccEEEEccCCCcc
Q 042307 746 LKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLK 783 (1314)
Q Consensus 746 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 783 (1314)
|++++|.+..+. +..+++|+.|+++++ .+.
T Consensus 323 L~L~~N~i~~~~-------~~~~~~L~~L~l~~N-~~~ 352 (390)
T 3o6n_A 323 LYLDHNSIVTLK-------LSTHHTLKNLTLSHN-DWD 352 (390)
T ss_dssp EECCSSCCCCCC-------CCTTCCCSEEECCSS-CEE
T ss_pred EECCCCccceeC-------chhhccCCEEEcCCC-Ccc
Confidence 888888776541 335788999999995 344
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=234.97 Aligned_cols=172 Identities=23% Similarity=0.309 Sum_probs=115.2
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~ 412 (1314)
+.++.+++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|+|++|.+..+ |..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 56777777777777654 246777888777643 34444567777888888887777765 6667777777777777777
Q ss_pred CCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccccc
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEG 489 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (1314)
+..+ ..|+++++|++|++++|.+..+ |..+..+++|++|++++| .+..++...+.++++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc-----
Confidence 7665 3467777777777777777644 556777777777777776 555555544667777777777776654
Q ss_pred CCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 490 QSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 490 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
......+.++++|+.|+++++.+.
T Consensus 166 -------~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 166 -------SIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp -------SCCHHHHTTCTTCCEEEEESCCCC
T ss_pred -------ccChhHhcccCCCcEEeCCCCcCc
Confidence 222234556666666666665543
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=7.4e-22 Score=230.13 Aligned_cols=236 Identities=19% Similarity=0.228 Sum_probs=180.5
Q ss_pred ccCCCccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCc
Q 042307 328 DTLKNCTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~ 404 (1314)
-.+++++.++++++.+..+|..+ .+++|++|++++|.+ ..++...|.++++|++|++++|.+..+ |..|.++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 35789999999999999999875 899999999999985 456666679999999999999999988 45689999999
Q ss_pred EEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 405 TLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 405 ~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
+|++++|.+..+ ..++++++|++|++++|.++.++ ..++.+++|++|++++| .++.++ ++.+++|++|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecccc
Confidence 999999999886 34799999999999999999774 56899999999999998 677765 567899999999998
Q ss_pred ccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCc
Q 042307 482 FIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNAS 561 (1314)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~ 561 (1314)
.+. .+...++|+.|+++++.+..+|... ..+++.++++.+..
T Consensus 197 ~l~-----------------~~~~~~~L~~L~l~~n~l~~~~~~~---------------------~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 197 LLS-----------------TLAIPIAVEELDASHNSINVVRGPV---------------------NVELTILKLQHNNL 238 (390)
T ss_dssp CCS-----------------EEECCSSCSEEECCSSCCCEEECCC---------------------CSSCCEEECCSSCC
T ss_pred ccc-----------------ccCCCCcceEEECCCCeeeeccccc---------------------cccccEEECCCCCC
Confidence 774 3344568999999998877654422 13455555555554
Q ss_pred cchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCC
Q 042307 562 ICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNP 610 (1314)
Q Consensus 562 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 610 (1314)
... ..+..+++|++|+++++.........+ ..+++|++|++++|.
T Consensus 239 ~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 239 TDT--AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNR 283 (390)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECCSSC
T ss_pred ccc--HHHcCCCCccEEECCCCcCCCcChhHc--cccccCCEEECCCCc
Confidence 443 345556666666666654332222222 345666666666654
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.7e-21 Score=231.18 Aligned_cols=248 Identities=19% Similarity=0.166 Sum_probs=186.1
Q ss_pred ccCCCccEEEcccCCCcccCC-Cc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCc
Q 042307 328 DTLKNCTAISLHNCKIGELVD-GL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~ 404 (1314)
...+.++.|++++|.+..++. .+ .+++|++|++++|.+.. +++..|.++++|++|+|++|.+..+|. .|.++++|+
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 466789999999999998865 34 89999999999997644 444557999999999999999999976 489999999
Q ss_pred EEEcCCCcCCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 405 TLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 405 ~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
+|++++|.+..+ ..++++++|++|++++|.++.+ |..++.+++|++|++++| .+..++...+.++++|+.|++++|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCC
Confidence 999999998865 6799999999999999999866 567999999999999998 788899888999999999999999
Q ss_pred ccccccccCCcccccccCcccccCCCCCcEEEeEecCC-CCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCC
Q 042307 482 FIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDP-KVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNA 560 (1314)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~ 560 (1314)
.+. ......+..+++|+.|+++++.. ..++... ....+++.++++.+.
T Consensus 187 ~i~------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------------~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 187 NIN------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-------------------LYGLNLTSLSITHCN 235 (477)
T ss_dssp CCC------------EECTTCSCSCTTCCEEEEECCTTCCEECTTT-------------------TTTCCCSEEEEESSC
T ss_pred cCc------------EeChhhcccCcccceeeCCCCccccccCccc-------------------ccCccccEEECcCCc
Confidence 886 33445688899999999998653 2222221 111245566666665
Q ss_pred ccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCC
Q 042307 561 SICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNP 610 (1314)
Q Consensus 561 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 610 (1314)
+..++...+..+++|+.|+++++.........+ ..+++|++|++++|.
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQ 283 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC--TTCTTCCEEECCSSC
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhc--cccccCCEEECCCCc
Confidence 555555555555566666655544221111111 334455555555443
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3e-21 Score=237.66 Aligned_cols=155 Identities=15% Similarity=0.306 Sum_probs=121.0
Q ss_pred CcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEEEcCCCcCCCc--cccCCCCCC
Q 042307 349 GLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLDNGVLGDV--AVIGELKQL 425 (1314)
Q Consensus 349 ~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L 425 (1314)
.+.+++++.+++++|. ...+|..+|.++++|++|+|++|.+..+| ..|+++++|++|+|++|.+..+ ..|+++++|
T Consensus 47 ~l~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 47 DITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SGGGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 3466788888888776 46678888888888999999988888774 4788888899999988888765 457888889
Q ss_pred CEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCccccc
Q 042307 426 EILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELK 504 (1314)
Q Consensus 426 ~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 504 (1314)
++|+|++|.++.+|.. ++++++|++|++++| .+..+++..++++++|++|++++|.+. .. .+.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~---~~~ 189 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT------------HV---DLS 189 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCS------------BC---CGG
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCC------------Cc---Chh
Confidence 9999998888888776 488888999999887 667776666888888888888888774 11 245
Q ss_pred CCCCCcEEEeEecCCC
Q 042307 505 HLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 505 ~l~~L~~L~l~~~~~~ 520 (1314)
.+++|+.|++++|.+.
T Consensus 190 ~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 190 LIPSLFHANVSYNLLS 205 (597)
T ss_dssp GCTTCSEEECCSSCCS
T ss_pred hhhhhhhhhcccCccc
Confidence 5677777777766543
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=4.1e-21 Score=236.43 Aligned_cols=236 Identities=19% Similarity=0.232 Sum_probs=181.5
Q ss_pred cCCCccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcE
Q 042307 329 TLKNCTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRT 405 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~ 405 (1314)
.+.+++.+++++|.+..+|..+ .+++|++|++++|.+. .+++..|..+++|++|+|++|.+..+|+ .|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4678999999999999999875 8999999999999864 5555567999999999999999998854 5899999999
Q ss_pred EEcCCCcCCCc--cccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCc
Q 042307 406 LCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTF 482 (1314)
Q Consensus 406 L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (1314)
|++++|.+..+ ..|+++++|++|++++|.++.+| ..++.+++|++|++++| .+..++ ++.+++|++|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCc
Confidence 99999999876 34799999999999999999764 56999999999999998 677775 5678999999999987
Q ss_pred cccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCcc
Q 042307 483 IQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASI 562 (1314)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 562 (1314)
+. .+....+|+.|++++|.+..++... ..+++.++++.+.+.
T Consensus 204 l~-----------------~l~~~~~L~~L~ls~n~l~~~~~~~---------------------~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 204 LS-----------------TLAIPIAVEELDASHNSINVVRGPV---------------------NVELTILKLQHNNLT 245 (597)
T ss_dssp CS-----------------EEECCTTCSEEECCSSCCCEEECSC---------------------CSCCCEEECCSSCCC
T ss_pred cc-----------------cccCCchhheeeccCCccccccccc---------------------CCCCCEEECCCCCCC
Confidence 74 3445678999999998876655432 134555666655554
Q ss_pred chhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCC
Q 042307 563 CLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPY 611 (1314)
Q Consensus 563 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 611 (1314)
.. ..+..+++|+.|+++++......+..+ ..+++|++|++++|..
T Consensus 246 ~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 246 DT--AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRL 290 (597)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTSCC
T ss_pred CC--hhhccCCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCCCC
Confidence 42 345566666666666655433222222 3456666666666653
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.2e-20 Score=212.16 Aligned_cols=102 Identities=18% Similarity=0.362 Sum_probs=48.3
Q ss_pred cccEEEecCCcCCCC-CcccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeecc
Q 042307 379 ELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSS 455 (1314)
Q Consensus 379 ~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 455 (1314)
+|++|++++|.+..+ |..|.++++|++|++++|.++.+ ..++++++|++|++++|.++.+|..+. ++|++|++++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHD 132 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCC
Confidence 444444444444444 22444444555555554444432 344445555555555555544444333 4455555554
Q ss_pred CCCCCccchhhhcCCCCCcEEEcCCCcc
Q 042307 456 CYQLKAISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
| .+..++...++++++|++|++++|.+
T Consensus 133 n-~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 133 N-RIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp S-CCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred C-ccCccCHhHhCCCccCCEEECCCCcc
Confidence 4 34444444344555555555555444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.2e-19 Score=206.02 Aligned_cols=147 Identities=19% Similarity=0.324 Sum_probs=68.7
Q ss_pred CccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCC
Q 042307 332 NCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDN 410 (1314)
Q Consensus 332 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~ 410 (1314)
+++.++++++.+..+|..+ .+++++|++++|.+ ..++...|.++++|++|++++|.+..+ |..|.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcC-CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4556666666665555433 23455555555543 233333345555555555555555544 44455555555555555
Q ss_pred CcCCCc-cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCc--cchhhhcCCCCCcEEEcCCCcc
Q 042307 411 GVLGDV-AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKA--ISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 411 ~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
|.++.+ ..+. ++|++|++++|.++.++. .++++++|++|++++| .+.. +....+.++++|++|++++|.+
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCcc
Confidence 544433 1111 445555555554444432 2444555555555444 2221 2222244444445554444444
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4.2e-20 Score=208.10 Aligned_cols=174 Identities=23% Similarity=0.301 Sum_probs=152.9
Q ss_pred CCCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEc
Q 042307 330 LKNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCL 408 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L 408 (1314)
..+++.|++++|.+..+|..+ .+++|++|++++|.+. .+|..+ .++++|++|+|++|.+..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 467899999999999999877 8999999999999876 788765 8999999999999999999999999999999999
Q ss_pred CCCcCC-Cc-cc---------cCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEE
Q 042307 409 DNGVLG-DV-AV---------IGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELY 477 (1314)
Q Consensus 409 ~~~~~~-~~-~~---------~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~ 477 (1314)
++|.+. .+ .. ++++++|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEEE
Confidence 997643 32 33 34599999999999999999999999999999999998 67788886 89999999999
Q ss_pred cCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCC
Q 042307 478 LGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDP 519 (1314)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 519 (1314)
+++|.+. +..+..+..+++|+.|++++|..
T Consensus 236 Ls~n~~~------------~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 236 LRGCTAL------------RNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp CTTCTTC------------CBCCCCTTCCCCCCEEECTTCTT
T ss_pred CcCCcch------------hhhHHHhcCCCCCCEEECCCCCc
Confidence 9998876 55667788899999999987653
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=3.4e-19 Score=202.21 Aligned_cols=290 Identities=19% Similarity=0.226 Sum_probs=150.3
Q ss_pred CccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEc
Q 042307 354 RLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSF 430 (1314)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L 430 (1314)
+++.++++++.. ..+|..+ .+++++|++++|.++.+|. .|.++++|++|++++|.+..+ ..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l-~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGL-EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCC-CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCc-cccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 455666655542 3445433 2456666666666665543 466666666666666665543 45666666666666
Q ss_pred cCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCc
Q 042307 431 QGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLN 510 (1314)
Q Consensus 431 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 510 (1314)
++|.++.+|..+. ++|++|++++| .+..++...+.++++|++|++++|.+.. .+..+..+..+++|+
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS----------SGIENGAFQGMKKLS 174 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG----------GGBCTTGGGGCTTCC
T ss_pred CCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc----------cCcChhhccCCCCcC
Confidence 6666666655443 56666666665 4555555555666666666666655431 012334455566666
Q ss_pred EEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchhhc
Q 042307 511 TLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVENVV 590 (1314)
Q Consensus 511 ~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 590 (1314)
.|+++++.+..+|..+. ..++.++++.+.+....+..+..+++|++|+++++.......
T Consensus 175 ~L~l~~n~l~~l~~~~~---------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 175 YIRIADTNITTIPQGLP---------------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp EEECCSSCCCSCCSSCC---------------------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred EEECCCCccccCCcccc---------------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 66666666555544321 234445555555554444555555566666665544322111
Q ss_pred cccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCc----cccccccceeEEecCC
Q 042307 591 YELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLR----AESFIRLRNLKVESCE 666 (1314)
Q Consensus 591 ~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~l~~L~~L~l~~c~ 666 (1314)
..+ ..+++|++|++++|... .++ .....+++|++|+++++ .++.+....+. ....+.++.|++.+++
T Consensus 234 ~~~--~~l~~L~~L~L~~N~l~-~lp-----~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 234 GSL--ANTPHLRELHLNNNKLV-KVP-----GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTG--GGSTTCCEEECCSSCCS-SCC-----TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhc--cCCCCCCEEECCCCcCc-cCC-----hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 112 33556666666665432 111 12344556666666652 23332221111 1124667778887765
Q ss_pred Ccc-cccchhhhccCCCccEEEEEec
Q 042307 667 KLT-HIFSFSISRGLPQLQTIEVIAC 691 (1314)
Q Consensus 667 ~l~-~l~~~~~~~~l~~L~~L~l~~~ 691 (1314)
... .+++ ..+..+++++.+++++|
T Consensus 305 ~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 305 VQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred ccccccCc-cccccccceeEEEeccc
Confidence 322 1222 45566788888888765
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.4e-20 Score=210.81 Aligned_cols=245 Identities=18% Similarity=0.196 Sum_probs=191.8
Q ss_pred CCccEEEcccCCCc---ccCCCc-CCCCccEEEeCC-CCCCcccCchhhhCCCcccEEEecCCcCC-CCCcccccCccCc
Q 042307 331 KNCTAISLHNCKIG---ELVDGL-ECPRLKFFHISP-REGFIKIPDNFFTRLTELRVLDFTDMHLL-SLPSSLHLLVNLR 404 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~-~lp~~~~~l~~L~ 404 (1314)
.++++|++++|.+. .+|..+ .+++|++|++++ |.+...+|..+ .++++|++|++++|.+. .+|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 68999999999986 577776 899999999995 77766777764 89999999999999998 7799999999999
Q ss_pred EEEcCCCcCCC--ccccCCCCCCCEEEccCccCc-ccchhhcCCC-CCCEEeeccCCCCCccchhhhcCCCCCcEEEcCC
Q 042307 405 TLCLDNGVLGD--VAVIGELKQLEILSFQGSNIE-QLPREIGQLT-RLRSLNLSSCYQLKAISSNVISNLSQLEELYLGD 480 (1314)
Q Consensus 405 ~L~L~~~~~~~--~~~~~~L~~L~~L~L~~~~i~-~lp~~i~~L~-~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~ 480 (1314)
+|++++|.+.. +..++++++|++|++++|.++ .+|..++.++ +|++|++++|.....+|.. ++.++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 99999999873 377999999999999999998 8899999998 9999999998433355655 88887 99999999
Q ss_pred CccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCC
Q 042307 481 TFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNA 560 (1314)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~ 560 (1314)
|.+. +..+..+..+++|+.|++++|.+...+..
T Consensus 207 N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------------------- 239 (313)
T 1ogq_A 207 NMLE------------GDASVLFGSDKNTQKIHLAKNSLAFDLGK----------------------------------- 239 (313)
T ss_dssp SEEE------------ECCGGGCCTTSCCSEEECCSSEECCBGGG-----------------------------------
T ss_pred Cccc------------CcCCHHHhcCCCCCEEECCCCceeeecCc-----------------------------------
Confidence 9875 45666788899999999998876533221
Q ss_pred ccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccc
Q 042307 561 SICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMN 640 (1314)
Q Consensus 561 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~ 640 (1314)
+..+++|++|+++++.....++..+ ..+++|++|++++|.....++ ....+++|+.|++.+.+.
T Consensus 240 --------~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip------~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 240 --------VGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIP------QGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp --------CCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECC------CSTTGGGSCGGGTCSSSE
T ss_pred --------ccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCC------CCccccccChHHhcCCCC
Confidence 2234677777777766544444444 457788888888887554443 225678888888888654
Q ss_pred h
Q 042307 641 L 641 (1314)
Q Consensus 641 l 641 (1314)
+
T Consensus 304 l 304 (313)
T 1ogq_A 304 L 304 (313)
T ss_dssp E
T ss_pred c
Confidence 3
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.4e-19 Score=205.47 Aligned_cols=237 Identities=15% Similarity=0.218 Sum_probs=163.5
Q ss_pred CccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCC
Q 042307 332 NCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDN 410 (1314)
Q Consensus 332 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~ 410 (1314)
+++.++++++.+..+|..+ .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..|.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5788999999998888765 468999999988754 55555568999999999999999876 77899999999999999
Q ss_pred CcCCCc-cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCc--cchhhhcCCCCCcEEEcCCCccccc
Q 042307 411 GVLGDV-AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKA--ISSNVISNLSQLEELYLGDTFIQWE 486 (1314)
Q Consensus 411 ~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (1314)
|.+..+ ..+. ++|++|++++|.++.+|. .++.+++|++|++++| .++. +....+..+ +|++|++++|.+..
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 988766 3333 789999999999988865 4788999999999987 4542 333446667 89999999888752
Q ss_pred cccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhh
Q 042307 487 TEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKD 566 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 566 (1314)
.+..+. ++|++|++++|.+..++... .....+++.++++.+.+....+
T Consensus 187 ------------l~~~~~--~~L~~L~l~~n~i~~~~~~~------------------l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 187 ------------IPKDLP--ETLNELHLDHNKIQAIELED------------------LLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp ------------CCSSSC--SSCSCCBCCSSCCCCCCTTS------------------STTCTTCSCCBCCSSCCCCCCT
T ss_pred ------------cCcccc--CCCCEEECCCCcCCccCHHH------------------hcCCCCCCEEECCCCcCCcCCh
Confidence 222222 57888888888776655321 1223344445555555544444
Q ss_pred HHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCC
Q 042307 567 EFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNP 610 (1314)
Q Consensus 567 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 610 (1314)
..+..+++|++|+++++... .++..+ ..+++|++|++++|.
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l--~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGL--PDLKLLQVVYLHTNN 275 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTG--GGCTTCCEEECCSSC
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhh--hcCccCCEEECCCCC
Confidence 45555566666666555432 222222 335556666665554
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=8.3e-20 Score=205.67 Aligned_cols=132 Identities=23% Similarity=0.379 Sum_probs=76.3
Q ss_pred CCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeecc
Q 042307 377 LTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSS 455 (1314)
Q Consensus 377 l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 455 (1314)
..++++|+|++|.+..+|..+.++++|++|++++|.+..+ ..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 3455666666666666666666666666666666665543 445666666666666666666666666666666666666
Q ss_pred CCCCCccchhhhc---------CCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCC
Q 042307 456 CYQLKAISSNVIS---------NLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVL 522 (1314)
Q Consensus 456 ~~~l~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 522 (1314)
|..++.+|.. ++ ++++|++|++++|.+. ..+..+.++++|++|++++|.+..+
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~-------------~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR-------------SLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC-------------CCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC-------------cchHhhcCCCCCCEEEccCCCCCcC
Confidence 6555555554 32 2555555555555442 2233455555555555555554433
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=209.58 Aligned_cols=242 Identities=21% Similarity=0.276 Sum_probs=167.3
Q ss_pred ccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEEEcCCC
Q 042307 333 CTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~~~ 411 (1314)
.+.++..++.+..+|..+. ++++.|++++|.+ ..++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCC-CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcC-CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4578888888888887654 6788889988875 4455555688899999999999888774 56888889999999998
Q ss_pred cCCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccc
Q 042307 412 VLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETE 488 (1314)
Q Consensus 412 ~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (1314)
.++.+ ..|+++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 88776 468888999999999998887765 67888999999998887888888777888889999999888775
Q ss_pred cCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHH
Q 042307 489 GQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEF 568 (1314)
Q Consensus 489 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 568 (1314)
.+..+..+++|+.|++++|.+..++... .....+++.++++.+.+..+.+..
T Consensus 199 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------~~~l~~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 199 ----------EIPNLTPLIKLDELDLSGNHLSAIRPGS------------------FQGLMHLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp ----------SCCCCTTCSSCCEEECTTSCCCEECTTT------------------TTTCTTCCEEECTTCCCCEECTTS
T ss_pred ----------cccccCCCcccCEEECCCCccCccChhh------------------hccCccCCEEECCCCceeEEChhh
Confidence 1224677888888888888776554321 222334444444444444444444
Q ss_pred HhhhcccceeecccccCchhhccccccCCCCCCceEEeecCC
Q 042307 569 FMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNP 610 (1314)
Q Consensus 569 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 610 (1314)
+..+++|+.|+|+++.........+ ..+++|+.|++++|+
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLPHDLF--TPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCCTTTT--SSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCCCCccChhHh--ccccCCCEEEcCCCC
Confidence 4455555555555443221111111 234455555555544
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=1.6e-20 Score=233.07 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=21.9
Q ss_pred ccccccceeEEecCCCcccccchhhhccCCCccEEEEE
Q 042307 652 ESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVI 689 (1314)
Q Consensus 652 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 689 (1314)
..+++|++|++++|. ++.......+..+++|++|++.
T Consensus 290 ~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 446677777777765 4333222334566777777766
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1.4e-19 Score=202.68 Aligned_cols=249 Identities=16% Similarity=0.187 Sum_probs=196.9
Q ss_pred CCccEEEeCCCCCCc--ccCchhhhCCCcccEEEecC-CcCC-CCCcccccCccCcEEEcCCCcCCC--ccccCCCCCCC
Q 042307 353 PRLKFFHISPREGFI--KIPDNFFTRLTELRVLDFTD-MHLL-SLPSSLHLLVNLRTLCLDNGVLGD--VAVIGELKQLE 426 (1314)
Q Consensus 353 ~~L~~L~l~~~~~~~--~~~~~~f~~l~~L~~L~Ls~-n~~~-~lp~~~~~l~~L~~L~L~~~~~~~--~~~~~~L~~L~ 426 (1314)
.+++.|++++|.+.+ .+|.. |.++++|++|++++ |.+. .+|..|+++++|++|++++|.+.. +..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999877 77876 48999999999995 8877 679999999999999999999873 37799999999
Q ss_pred EEEccCccCc-ccchhhcCCCCCCEEeeccCCCCC-ccchhhhcCCC-CCcEEEcCCCccccccccCCcccccccCcccc
Q 042307 427 ILSFQGSNIE-QLPREIGQLTRLRSLNLSSCYQLK-AISSNVISNLS-QLEELYLGDTFIQWETEGQSSSERSRASLHEL 503 (1314)
Q Consensus 427 ~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~-~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 503 (1314)
+|++++|.++ .+|..++.+++|++|++++| .+. .+|.. ++++. +|++|++++|.+. +..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~------------~~~~~~~ 194 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLT------------GKIPPTF 194 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEE------------EECCGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeee------------ccCChHH
Confidence 9999999998 78999999999999999998 455 67776 88888 9999999999885 4556677
Q ss_pred cCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccc
Q 042307 504 KHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEV 583 (1314)
Q Consensus 504 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 583 (1314)
..++ |+.|++++|.+...+. ..+..+++|+.|+++++
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~------------------------------------------~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDAS------------------------------------------VLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCG------------------------------------------GGCCTTSCCSEEECCSS
T ss_pred hCCc-ccEEECcCCcccCcCC------------------------------------------HHHhcCCCCCEEECCCC
Confidence 7776 9999998876543322 33455788889998887
Q ss_pred cCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEe
Q 042307 584 QGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVE 663 (1314)
Q Consensus 584 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 663 (1314)
....... .+ ..+++|++|++++|.....++ .....+++|+.|+++++.--..+ +....+++|+.+++.
T Consensus 232 ~l~~~~~-~~--~~l~~L~~L~Ls~N~l~~~~p-----~~l~~l~~L~~L~Ls~N~l~~~i----p~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 232 SLAFDLG-KV--GLSKNLNGLDLRNNRIYGTLP-----QGLTQLKFLHSLNVSFNNLCGEI----PQGGNLQRFDVSAYA 299 (313)
T ss_dssp EECCBGG-GC--CCCTTCCEEECCSSCCEECCC-----GGGGGCTTCCEEECCSSEEEEEC----CCSTTGGGSCGGGTC
T ss_pred ceeeecC-cc--cccCCCCEEECcCCcccCcCC-----hHHhcCcCCCEEECcCCcccccC----CCCccccccChHHhc
Confidence 6543322 23 568999999999998654332 13567899999999996432222 224678999999999
Q ss_pred cCCCcccc
Q 042307 664 SCEKLTHI 671 (1314)
Q Consensus 664 ~c~~l~~l 671 (1314)
+++.+.+.
T Consensus 300 ~N~~lc~~ 307 (313)
T 1ogq_A 300 NNKCLCGS 307 (313)
T ss_dssp SSSEEEST
T ss_pred CCCCccCC
Confidence 98877654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3.3e-19 Score=200.04 Aligned_cols=174 Identities=21% Similarity=0.220 Sum_probs=101.0
Q ss_pred EEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC---CcccccCccCcEEEcCCC
Q 042307 335 AISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL---PSSLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 335 ~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l---p~~~~~l~~L~~L~L~~~ 411 (1314)
.++.+++.+..+|..+. +++++|++++|.+ ..+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 45666666666665432 4566666666653 355555556666666666666666543 445556666666666666
Q ss_pred cCCCc-cccCCCCCCCEEEccCccCcccch--hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccc
Q 042307 412 VLGDV-AVIGELKQLEILSFQGSNIEQLPR--EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETE 488 (1314)
Q Consensus 412 ~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (1314)
.+..+ ..+.++++|++|++++|.++.+|. .+..+++|++|++++| .+...+...++++++|++|++++|.+..
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 164 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQE--- 164 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGG---
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcccc---
Confidence 65544 446666666666666666665543 4566666666666665 3444444445666666666666665530
Q ss_pred cCCcccccccCcccccCCCCCcEEEeEecCCCCC
Q 042307 489 GQSSSERSRASLHELKHLSSLNTLEIQVRDPKVL 522 (1314)
Q Consensus 489 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 522 (1314)
...+..+..+++|++|++++|.+..+
T Consensus 165 --------~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 165 --------NFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp --------GEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred --------ccchhHHhhCcCCCEEECCCCCcCCc
Confidence 12334455666666666666555433
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=6.9e-19 Score=209.05 Aligned_cols=176 Identities=21% Similarity=0.288 Sum_probs=141.0
Q ss_pred CccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCC
Q 042307 332 NCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDN 410 (1314)
Q Consensus 332 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~ 410 (1314)
..+.++.++..+..+|..+. +++++|++++|.+. .++...|.++++|++|+|++|.+..+ |..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34578888888888887653 67899999988754 44445568899999999999998877 46788899999999999
Q ss_pred CcCCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccc
Q 042307 411 GVLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWET 487 (1314)
Q Consensus 411 ~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (1314)
|.++.+ ..++++++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 988765 458889999999999999887765 57889999999999888888888877888999999999988775
Q ss_pred ccCCcccccccCcccccCCCCCcEEEeEecCCCCCC
Q 042307 488 EGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLP 523 (1314)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 523 (1314)
.+..+..+++|+.|++++|.+..++
T Consensus 210 -----------~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 210 -----------DMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp -----------SCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred -----------ccccccccccccEEECcCCcCcccC
Confidence 1234677888888888888766543
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=1.2e-20 Score=234.14 Aligned_cols=382 Identities=17% Similarity=0.131 Sum_probs=205.2
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhC-CC-cccEEEecCCc-CC--CCCcccccCccCcEEEcCCCcCCCc------ccc
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTR-LT-ELRVLDFTDMH-LL--SLPSSLHLLVNLRTLCLDNGVLGDV------AVI 419 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~-l~-~L~~L~Ls~n~-~~--~lp~~~~~l~~L~~L~L~~~~~~~~------~~~ 419 (1314)
.+++|++|++++|.+....+..+ .. ++ +|++|++++|. +. .++..+.++++|++|++++|.+.+. ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRL-AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHH-HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHH-HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 45667777776665433332222 22 22 36777776664 11 2223334566677777776664322 233
Q ss_pred CCCCCCCEEEccCccCc-----ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCccc
Q 042307 420 GELKQLEILSFQGSNIE-----QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSE 494 (1314)
Q Consensus 420 ~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 494 (1314)
.++++|++|++++|.++ .++..+.++++|++|++++| .+..++.. +.++++|++|++++.....
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~--------- 257 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDI--------- 257 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCT---------
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhccccccccc---------
Confidence 45666777777666654 33444556666777777665 44455543 6666667766665422110
Q ss_pred ccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcc
Q 042307 495 RSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKG 574 (1314)
Q Consensus 495 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~ 574 (1314)
........+..+++|+.|+++......+| ..+..+++
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~~~l~-------------------------------------------~~~~~~~~ 294 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMP-------------------------------------------ILFPFAAQ 294 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCTTTGG-------------------------------------------GGGGGGGG
T ss_pred chHHHHHHhhccccccccCccccchhHHH-------------------------------------------HHHhhcCC
Confidence 00223344555566666665543222222 23344556
Q ss_pred cceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccC----------ccchhhh
Q 042307 575 LEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSN----------LMNLEKI 644 (1314)
Q Consensus 575 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~ 644 (1314)
|++|+++++.........+ ...+++|++|++.++.....+. .....+++|++|++.+ |..++..
T Consensus 295 L~~L~Ls~~~l~~~~~~~~-~~~~~~L~~L~L~~~~~~~~l~-----~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTL-IQKCPNLEVLETRNVIGDRGLE-----VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp CCEEEETTCCCCHHHHHHH-HTTCTTCCEEEEEGGGHHHHHH-----HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred CcEEecCCCcCCHHHHHHH-HHhCcCCCEEeccCccCHHHHH-----HHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 6666666555222211111 1346666666666321110000 0112355666666663 4444332
Q ss_pred hcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEEec---cCcceeeeeccccccCCcccccceeccccc
Q 042307 645 SCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIAC---KSMKHIFVVGREDDINNTEVVDKIEFSQLR 721 (1314)
Q Consensus 645 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 721 (1314)
..... ...+++|++|++ .|+.+++.........+++|++|++.+| ..+...+.. .........+++|+
T Consensus 369 ~~~~l-~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-------~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 369 GLIAL-AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-------NGVRSLLIGCKKLR 439 (592)
T ss_dssp HHHHH-HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-------HHHHHHHHHCTTCC
T ss_pred HHHHH-HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH-------HHHHHHHHhCCCCC
Confidence 11100 234778888888 5566665433333445788888888753 334332100 00011123578888
Q ss_pred eeeccCCCc-ccc--ccc-ccccCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHHHHhhcc
Q 042307 722 KLTLKSLPQ-LRS--FCS-VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQL 797 (1314)
Q Consensus 722 ~L~l~~~~~-l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 797 (1314)
.|++++|.. ++. +.. ...+++|+.|++++|.+... .++..+..+++|++|++++|+ ++.......+..+++|
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 515 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE---GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSL 515 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH---HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSC
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH---HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCcc
Confidence 888877653 221 111 23478899999998875431 223334567999999999987 6543334556789999
Q ss_pred cEeeecccc
Q 042307 798 QHLEIRKCM 806 (1314)
Q Consensus 798 ~~L~l~~c~ 806 (1314)
++|++++|.
T Consensus 516 ~~L~ls~n~ 524 (592)
T 3ogk_B 516 RYLWVQGYR 524 (592)
T ss_dssp CEEEEESCB
T ss_pred CeeECcCCc
Confidence 999999997
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=199.65 Aligned_cols=174 Identities=20% Similarity=0.262 Sum_probs=93.3
Q ss_pred EEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCcCC
Q 042307 336 ISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGVLG 414 (1314)
Q Consensus 336 l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~~~ 414 (1314)
.+.+++.+..+|..+. ++|++|++++|.+ ..++...|.++++|++|++++|.+..+ |..|.++++|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT-EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTCC-TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccccc-ccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4555555555555432 3555666655553 234443445556666666666555544 334555556666666665555
Q ss_pred Cc--cccCCCCCCCEEEccCccCcccch--hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccC
Q 042307 415 DV--AVIGELKQLEILSFQGSNIEQLPR--EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQ 490 (1314)
Q Consensus 415 ~~--~~~~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 490 (1314)
.+ ..++++++|++|++++|.++.+|. .++.+++|++|++++|..+..++...++++++|++|++++|.+.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~------ 187 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------ 187 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC------
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC------
Confidence 44 225555666666666665555554 45555666666665554455554444555556666666555543
Q ss_pred CcccccccCcccccCCCCCcEEEeEecCCCCCC
Q 042307 491 SSSERSRASLHELKHLSSLNTLEIQVRDPKVLP 523 (1314)
Q Consensus 491 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 523 (1314)
...+..+..+++|++|+++++.+..++
T Consensus 188 ------~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 188 ------SYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp ------EECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred ------ccCHHHHhccccCCeecCCCCccccch
Confidence 223344555555555555555554443
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.7e-18 Score=191.73 Aligned_cols=147 Identities=20% Similarity=0.268 Sum_probs=69.8
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~ 412 (1314)
+.++.+++.+..+|..+ .+++++|++++|.+ ..++...|.++++|++|++++|.+..+ |..|.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcC-CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34444444454444432 23455555555443 223333344555555555555555444 4445555555555555554
Q ss_pred -CCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcc
Q 042307 413 -LGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 413 -~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
+..+ ..++++++|++|++++|.++.+ |..++.+++|++|++++| .+..++...++++++|++|++++|.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcc
Confidence 4332 3444555555555555555433 333445555555555554 34444443344555555555555544
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.6e-18 Score=191.95 Aligned_cols=184 Identities=25% Similarity=0.373 Sum_probs=159.9
Q ss_pred cccCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCc-CCCC-CcccccCcc
Q 042307 327 RDTLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMH-LLSL-PSSLHLLVN 402 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~-~~~l-p~~~~~l~~ 402 (1314)
....+++++|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|. +..+ |..|.++++
T Consensus 28 ~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 35678999999999999998864 3 8999999999999764 4544556999999999999997 8888 778999999
Q ss_pred CcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcC
Q 042307 403 LRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLG 479 (1314)
Q Consensus 403 L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~ 479 (1314)
|++|++++|.+..+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++| .++.++...+.++++|++|+++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECC
Confidence 99999999998875 6689999999999999999988754 899999999999998 7888888778999999999999
Q ss_pred CCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 480 DTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
+|.+. ...+..+..+++|+.|++++|.+..++.
T Consensus 186 ~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 186 QNRVA------------HVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp SSCCC------------EECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CCccc------------ccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 99886 4456678889999999999988776553
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=4.2e-18 Score=195.19 Aligned_cols=199 Identities=23% Similarity=0.307 Sum_probs=153.0
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCcCCCc--cccCCCCCCCE
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEI 427 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~ 427 (1314)
.|+.....+.+++. ...+|..++ ++|++|++++|.++.+|. .|.++++|++|++++|.++.+ ..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~-l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGS-LNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTT-CSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCC-ccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 56666677887776 457887653 589999999999998866 799999999999999998875 56999999999
Q ss_pred EEccCccCcccchh-hcCCCCCCEEeeccCCCCCccch-hhhcCCCCCcEEEcCCCc-cccccccCCcccccccCccccc
Q 042307 428 LSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISS-NVISNLSQLEELYLGDTF-IQWETEGQSSSERSRASLHELK 504 (1314)
Q Consensus 428 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~ 504 (1314)
|++++|.++.+|.. ++.+++|++|++++| .+..+|. ..++++++|++|++++|. +. ...+..+.
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~------------~~~~~~~~ 171 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT------------KIQRKDFA 171 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC------------EECTTTTT
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc------------ccCHHHcc
Confidence 99999999998876 899999999999997 7788887 458899999999999884 43 23345678
Q ss_pred CCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeeccccc
Q 042307 505 HLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQ 584 (1314)
Q Consensus 505 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 584 (1314)
.+++|++|++++|.+..++.. +.....+++.++++.+.....+...+..+++|+.|+++++.
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPK------------------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTT------------------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred CCCCCCEEECCCCCcCccCHH------------------HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 889999999999887654322 12334456666666666655555555556666666666554
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.9e-17 Score=200.50 Aligned_cols=257 Identities=21% Similarity=0.167 Sum_probs=183.8
Q ss_pred CccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCC
Q 042307 332 NCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 332 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~ 411 (1314)
.++.+++++|.+..+|..+. ++|++|++++|.+ ..+|. .+++|++|+|++|.++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l-~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL-TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC-SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCC-CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 47889999999999988765 7999999999975 46665 47899999999999999987 6789999999999
Q ss_pred cCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCC
Q 042307 412 VLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQS 491 (1314)
Q Consensus 412 ~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 491 (1314)
.++.++. .+.+|++|++++|.++.+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.+..
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~------ 175 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS------ 175 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC------
Confidence 9887755 678999999999999998874 488999999998 6777765 35688999999988751
Q ss_pred cccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHhh
Q 042307 492 SSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFMQ 571 (1314)
Q Consensus 492 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 571 (1314)
.+ ..+++|+.|++++|.+..+|...
T Consensus 176 -------l~---~~~~~L~~L~Ls~N~l~~l~~~~--------------------------------------------- 200 (622)
T 3g06_A 176 -------LP---MLPSGLQELSVSDNQLASLPTLP--------------------------------------------- 200 (622)
T ss_dssp -------CC---CCCTTCCEEECCSSCCSCCCCCC---------------------------------------------
T ss_pred -------Cc---ccCCCCcEEECCCCCCCCCCCcc---------------------------------------------
Confidence 22 34678999999988887766421
Q ss_pred hcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCccchhhhhcCCCcc
Q 042307 572 LKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLMNLEKISCSQLRA 651 (1314)
Q Consensus 572 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 651 (1314)
++|+.|++.++... .+. ..+++|++|++++|.... ++ ..+++|+.|+++++ .++.++.
T Consensus 201 -~~L~~L~L~~N~l~-~l~-----~~~~~L~~L~Ls~N~L~~-lp--------~~l~~L~~L~Ls~N-~L~~lp~----- 258 (622)
T 3g06_A 201 -SELYKLWAYNNRLT-SLP-----ALPSGLKELIVSGNRLTS-LP--------VLPSELKELMVSGN-RLTSLPM----- 258 (622)
T ss_dssp -TTCCEEECCSSCCS-SCC-----CCCTTCCEEECCSSCCSC-CC--------CCCTTCCEEECCSS-CCSCCCC-----
T ss_pred -chhhEEECcCCccc-ccC-----CCCCCCCEEEccCCccCc-CC--------CCCCcCcEEECCCC-CCCcCCc-----
Confidence 34555555544321 111 224667777777765321 11 33466777776663 3333221
Q ss_pred ccccccceeEEecCCCcccccchhhhccCCCccEEEEEeccCc
Q 042307 652 ESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVIACKSM 694 (1314)
Q Consensus 652 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~~~~l 694 (1314)
.+++|+.|++++| .++.+|. .+.++++|+.|++++|+..
T Consensus 259 -~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 -LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCC
T ss_pred -ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCCC
Confidence 4567777777775 5556653 3567777777777777643
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=7e-21 Score=228.19 Aligned_cols=66 Identities=20% Similarity=0.056 Sum_probs=36.2
Q ss_pred cCccceeeecccccccccCCCCCCcccccCCccEEEEccCCCccccCcHHHHHHhh----cccEeeecccc
Q 042307 740 FPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLM----QLQHLEIRKCM 806 (1314)
Q Consensus 740 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~----~L~~L~l~~c~ 806 (1314)
.++|+.|++++|.+.......++..+..+++|++|++++| .++..........++ +|+.|.+.++.
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 4577777777776543111123444445678888888885 454432222233332 47777776653
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.1e-19 Score=225.84 Aligned_cols=268 Identities=14% Similarity=0.155 Sum_probs=135.0
Q ss_pred ccccceeeccCCCcccc--cccc-cccCccceeeecccccccccCCCCCCcccccCCccEEEEccCC-CccccCcHHHHH
Q 042307 717 FSQLRKLTLKSLPQLRS--FCSV-VAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCS-NLKYLFSTSLVR 792 (1314)
Q Consensus 717 ~~~L~~L~l~~~~~l~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~-~l~~l~~~~~~~ 792 (1314)
+++|+.|++.+|..++. ++.. ..+++|++|++++|.+.......++.....+++|++|++++|. .+..-.......
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 55566666665544433 2222 2456666777766654432222233333356677777777764 121111112234
Q ss_pred HhhcccEeeeccccccccccccCccccccccccccchhhhHhhhccccccccccCCCCCCCCcceeeeecCCC-cchhhc
Q 042307 793 SLMQLQHLEIRKCMDLEEIVFPEEMIEEERKDIMLPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLQIVKCPE-LKAFIL 871 (1314)
Q Consensus 793 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~-l~~~~~ 871 (1314)
.+++|++|++++|..++.+. . ....+++|+++.+..|.. +..-
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~--~--------------------------------~~~~~~~L~~L~l~~~~~~~~~~-- 252 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLA--T--------------------------------LLQRAPQLEELGTGGYTAEVRPD-- 252 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHH--H--------------------------------HHHHCTTCSEEECSBCCCCCCHH--
T ss_pred hCCCCcEEecCCCCcHHHHH--H--------------------------------HHhcCCcceEcccccccCccchh--
Confidence 45777777777775443210 0 001245566665554432 1100
Q ss_pred cccccccccccccccccccccCCCccce-ecccCCCceeeecCCCCCCccccccEEEEecCCCccccccchHHhhccccc
Q 042307 872 QNISTDMTAVGIQPFFNKMVALPSLEEM-VLSNMGNLKTIWHSQFAGESFCKLKLMEVKFCKSLRTIFPHNMFARFLKLE 950 (1314)
Q Consensus 872 ~~~~~~~~~~~~~~l~~~~~~l~~L~~L-~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~ 950 (1314)
.+..++..+..+++|+.+ .+.+... ..++... ..+++|+.|++.+|. +++.....+...+++|+
T Consensus 253 ----------~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~---~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~ 317 (594)
T 2p1m_B 253 ----------VYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVY---SVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQ 317 (594)
T ss_dssp ----------HHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGH---HHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCC
T ss_pred ----------hHHHHHHHHhcCCCcccccCCcccch-hhHHHHH---HhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcC
Confidence 001111223355666665 2222110 0111000 024788888888887 65444445556788888
Q ss_pred EEEEecCCchHHHhhccCCcccccccccccccceeeeccc--------CccceecccCCCcc-eecCcccEEEEecCCCc
Q 042307 951 SLIVGACGSLQEIFDLQELNSEETHSGAVSRLGKLHVFRL--------PKLTKIWNKDPRGN-LIFQNLVLVRIFECQRL 1021 (1314)
Q Consensus 951 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~i~~~~~~~l-~~l~~L~~L~l~~c~~L 1021 (1314)
+|++++|..-..+.. ....+++|+.|++.+| ..++.. ....+ ..+++|++|.+ +|+++
T Consensus 318 ~L~l~~~~~~~~l~~---------l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~---~l~~l~~~~~~L~~L~~-~~~~l 384 (594)
T 2p1m_B 318 RLWVLDYIEDAGLEV---------LASTCKDLRELRVFPSEPFVMEPNVALTEQ---GLVSVSMGCPKLESVLY-FCRQM 384 (594)
T ss_dssp EEEEEGGGHHHHHHH---------HHHHCTTCCEEEEECSCTTCSSCSSCCCHH---HHHHHHHHCTTCCEEEE-EESCC
T ss_pred EEeCcCccCHHHHHH---------HHHhCCCCCEEEEecCcccccccCCCCCHH---HHHHHHHhchhHHHHHH-hcCCc
Confidence 888888722222221 1124677888888443 333221 00111 23677888854 66777
Q ss_pred ccccchhHHhhhccccEEeEe-----ecccce
Q 042307 1022 KSVFPTSVAKSLLQLERLSIN-----NCESVE 1048 (1314)
Q Consensus 1022 ~~~~~~~~~~~l~~L~~L~i~-----~c~~l~ 1048 (1314)
+...+..+...+++|+.|+++ +|+.++
T Consensus 385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 766566665567888888887 455554
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=200.47 Aligned_cols=224 Identities=21% Similarity=0.319 Sum_probs=193.3
Q ss_pred cccCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccC
Q 042307 327 RDTLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNL 403 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L 403 (1314)
....++++.|++++|.+..++.. + .+++|++|++++|.+ ..++...|.++++|++|+|++|.++.+|. .|.++++|
T Consensus 60 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence 35668899999999999888754 3 899999999999985 45676778999999999999999999966 69999999
Q ss_pred cEEEcCCCcCCCc--cccCCCCCCCEEEccCc-cCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcC
Q 042307 404 RTLCLDNGVLGDV--AVIGELKQLEILSFQGS-NIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLG 479 (1314)
Q Consensus 404 ~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~-~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~ 479 (1314)
++|++++|.+..+ ..+.++++|++|++++| .+..+|. .+..+++|++|++++| .++.+|. +..+++|++|+++
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPLIKLDELDLS 215 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTTCSSCCEEECT
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCCCcccCEEECC
Confidence 9999999999876 56999999999999995 6777765 6899999999999998 7888885 8899999999999
Q ss_pred CCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecC
Q 042307 480 DTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLN 559 (1314)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~ 559 (1314)
+|.+. ...+..+..+++|+.|++++|.+..++... .....+++.++++.|
T Consensus 216 ~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 216 GNHLS------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNA------------------FDNLQSLVEINLAHN 265 (440)
T ss_dssp TSCCC------------EECTTTTTTCTTCCEEECTTCCCCEECTTS------------------STTCTTCCEEECTTS
T ss_pred CCccC------------ccChhhhccCccCCEEECCCCceeEEChhh------------------hcCCCCCCEEECCCC
Confidence 99886 444567889999999999999887665432 345677889999999
Q ss_pred CccchhhHHHhhhcccceeeccccc
Q 042307 560 ASICLKDEFFMQLKGLEELWLDEVQ 584 (1314)
Q Consensus 560 ~~~~~~~~~~~~l~~L~~L~l~~~~ 584 (1314)
.+..+++..+..+++|+.|+++++.
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCccChhHhccccCCCEEEcCCCC
Confidence 9998888889999999999998765
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=6.3e-18 Score=200.76 Aligned_cols=225 Identities=22% Similarity=0.297 Sum_probs=182.8
Q ss_pred cccCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccC
Q 042307 327 RDTLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNL 403 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L 403 (1314)
....++++.|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|+|++|.+..+|. .|.++++|
T Consensus 71 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 71 QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 34667899999999999888554 4 8999999999999864 5565667999999999999999998865 48999999
Q ss_pred cEEEcCCCcCCCc--cccCCCCCCCEEEccCc-cCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcC
Q 042307 404 RTLCLDNGVLGDV--AVIGELKQLEILSFQGS-NIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLG 479 (1314)
Q Consensus 404 ~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~-~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~ 479 (1314)
++|++++|.+..+ ..+.++++|++|++++| .+..+|. .+..+++|++|++++| .+..+|. +..+++|++|+++
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN--LTPLVGLEELEMS 226 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC--CTTCTTCCEEECT
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc--ccccccccEEECc
Confidence 9999999999876 57999999999999995 6777765 5899999999999998 7888875 8899999999999
Q ss_pred CCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecC
Q 042307 480 DTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLN 559 (1314)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~ 559 (1314)
+|.+. ...+..+..+++|+.|++++|.+..++..
T Consensus 227 ~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------------------- 260 (452)
T 3zyi_A 227 GNHFP------------EIRPGSFHGLSSLKKLWVMNSQVSLIERN---------------------------------- 260 (452)
T ss_dssp TSCCS------------EECGGGGTTCTTCCEEECTTSCCCEECTT----------------------------------
T ss_pred CCcCc------------ccCcccccCccCCCEEEeCCCcCceECHH----------------------------------
Confidence 99986 44566789999999999998887655432
Q ss_pred CccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCC
Q 042307 560 ASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPY 611 (1314)
Q Consensus 560 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 611 (1314)
.+..+++|+.|+++++.........+ ..+++|+.|++++|+.
T Consensus 261 --------~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 261 --------AFDGLASLVELNLAHNNLSSLPHDLF--TPLRYLVELHLHHNPW 302 (452)
T ss_dssp --------TTTTCTTCCEEECCSSCCSCCCTTSS--TTCTTCCEEECCSSCE
T ss_pred --------HhcCCCCCCEEECCCCcCCccChHHh--ccccCCCEEEccCCCc
Confidence 23446777777777765432221222 4578888999988874
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=5.2e-20 Score=228.70 Aligned_cols=406 Identities=16% Similarity=0.142 Sum_probs=232.2
Q ss_pred CCCccEEEcccCC-CcccC---CC------------c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCC-cCC
Q 042307 330 LKNCTAISLHNCK-IGELV---DG------------L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDM-HLL 391 (1314)
Q Consensus 330 ~~~l~~l~l~~~~-l~~l~---~~------------~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n-~~~ 391 (1314)
+++++.+++.++. +.++. .. . .+++|++|++++|.+....+..+...+++|++|++++| .+.
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 4567788888765 22221 11 1 57788888888887555445444346888899998888 454
Q ss_pred C--CCcccccCccCcEEEcCCCcCCCc--c----ccCCCCCCCEEEccCcc--Cc--ccchhhcCCCCCCEEeeccCCCC
Q 042307 392 S--LPSSLHLLVNLRTLCLDNGVLGDV--A----VIGELKQLEILSFQGSN--IE--QLPREIGQLTRLRSLNLSSCYQL 459 (1314)
Q Consensus 392 ~--lp~~~~~l~~L~~L~L~~~~~~~~--~----~~~~L~~L~~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l 459 (1314)
. ++..+.++++|++|++++|.+++. . ....+++|++|++++|. +. .++.-+.++++|++|++++|..+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 3 455556788899999988886542 2 23367788888888886 32 23333456788888988888666
Q ss_pred CccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEE-eEecCCCCCCCcccccccceeEEEE
Q 042307 460 KAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLE-IQVRDPKVLPKGFLSQKLKRYKVFI 538 (1314)
Q Consensus 460 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~~L~~l~~~~ 538 (1314)
..++.. +.++++|++|+++.+.... ........+..+.++++|+.|. +.......+
T Consensus 225 ~~l~~~-~~~~~~L~~L~l~~~~~~~------~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l---------------- 281 (594)
T 2p1m_B 225 EKLATL-LQRAPQLEELGTGGYTAEV------RPDVYSGLSVALSGCKELRCLSGFWDAVPAYL---------------- 281 (594)
T ss_dssp HHHHHH-HHHCTTCSEEECSBCCCCC------CHHHHHHHHHHHHTCTTCCEEECCBTCCGGGG----------------
T ss_pred HHHHHH-HhcCCcceEcccccccCcc------chhhHHHHHHHHhcCCCcccccCCcccchhhH----------------
Confidence 665554 7788888888876653210 0011122334567777787773 211111101
Q ss_pred ccccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccC
Q 042307 539 GDEWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDS 618 (1314)
Q Consensus 539 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~ 618 (1314)
+.....+++|++|+++++.........+ ...+++|++|++.+|....
T Consensus 282 ---------------------------~~~~~~~~~L~~L~L~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~~~----- 328 (594)
T 2p1m_B 282 ---------------------------PAVYSVCSRLTTLNLSYATVQSYDLVKL-LCQCPKLQRLWVLDYIEDA----- 328 (594)
T ss_dssp ---------------------------GGGHHHHTTCCEEECTTCCCCHHHHHHH-HTTCTTCCEEEEEGGGHHH-----
T ss_pred ---------------------------HHHHHhhCCCCEEEccCCCCCHHHHHHH-HhcCCCcCEEeCcCccCHH-----
Confidence 1222345666666666655222211111 1345667777776651100
Q ss_pred CCCC-CCCcCCccceecccC--------ccchhhhhcCCCccccccccceeEEecCCCcccccchhhhccCCCccEEEEE
Q 042307 619 TELV-PLDAFPLLESLSLSN--------LMNLEKISCSQLRAESFIRLRNLKVESCEKLTHIFSFSISRGLPQLQTIEVI 689 (1314)
Q Consensus 619 ~~~~-~~~~~~~L~~L~l~~--------~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 689 (1314)
... ....+++|++|++.+ +..++....... ...+++|+.|. .+|+.++..........+++|+.|++.
T Consensus 329 -~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~-~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 329 -GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVL-YFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp -HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH-HHHCTTCCEEE-EEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred -HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH-HHhchhHHHHH-HhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 000 012356666666633 223222111000 12467888884 455666654433344568889999888
Q ss_pred -----eccCcceeeeeccccccCCcccccceeccccceeeccCCCcccc--ccccc-ccCccceeeecccccccccCCCC
Q 042307 690 -----ACKSMKHIFVVGREDDINNTEVVDKIEFSQLRKLTLKSLPQLRS--FCSVV-AFPNLETLKLSAINSETIWHNQL 761 (1314)
Q Consensus 690 -----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~~~ 761 (1314)
+|..+...+.. .....-...+++|+.|++++ .++. +..+. .+++|+.|++++|.+... .+
T Consensus 406 ~~~~~~~~~l~~~~~~-------~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~---~~ 473 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPLD-------IGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL---GM 473 (594)
T ss_dssp ESSTTCCCTTTCCCTH-------HHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHH---HH
T ss_pred cccCCCcccccCCchh-------hHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHH---HH
Confidence 45555432210 00000134578888888866 3332 12222 378899999988875432 11
Q ss_pred CCcccccCCccEEEEccCCCccccCcHHHHHHhhcccEeeeccccc
Q 042307 762 PAMSSCIQNLTRLIVHGCSNLKYLFSTSLVRSLMQLQHLEIRKCMD 807 (1314)
Q Consensus 762 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 807 (1314)
......+++|+.|++++|+. +.......+..+++|+.|++++|+.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 22224578999999999864 4332223445688999999999965
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=5.2e-18 Score=190.27 Aligned_cols=225 Identities=20% Similarity=0.227 Sum_probs=183.3
Q ss_pred ccCCCccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcc--cCchhhhCCCcccEEEecCCcCCCCCcccccCccC
Q 042307 328 DTLKNCTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIK--IPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNL 403 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~--~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L 403 (1314)
...+++++|++++|.+..+|... .+++|++|++++|.+... .+.. +..+++|++|++++|.+..+|..+.++++|
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCC
Confidence 45678999999999999999864 899999999999986422 2444 467999999999999999999999999999
Q ss_pred cEEEcCCCcCCCc---cccCCCCCCCEEEccCccCcc-cchhhcCCCCCCEEeeccCCCCCc--cchhhhcCCCCCcEEE
Q 042307 404 RTLCLDNGVLGDV---AVIGELKQLEILSFQGSNIEQ-LPREIGQLTRLRSLNLSSCYQLKA--ISSNVISNLSQLEELY 477 (1314)
Q Consensus 404 ~~L~L~~~~~~~~---~~~~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~l~~L~~L~ 477 (1314)
++|++++|.+..+ ..++++++|++|++++|.+.. .|..++.+++|++|++++| .+.. +|.. +..+++|++|+
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~ 181 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDI-FTELRNLTFLD 181 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSC-CTTCTTCCEEE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhH-HhhCcCCCEEE
Confidence 9999999998765 468999999999999999984 4667899999999999998 4544 4554 89999999999
Q ss_pred cCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEee
Q 042307 478 LGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLK 557 (1314)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~ 557 (1314)
+++|.+. ...+..+..+++|+.|++++|.+..++..
T Consensus 182 Ls~n~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------------- 217 (306)
T 2z66_A 182 LSQCQLE------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTF-------------------------------- 217 (306)
T ss_dssp CTTSCCC------------EECTTTTTTCTTCCEEECTTSCCSBCCSG--------------------------------
T ss_pred CCCCCcC------------CcCHHHhcCCCCCCEEECCCCccCccChh--------------------------------
Confidence 9999886 34456788899999999999988766542
Q ss_pred cCCccchhhHHHhhhcccceeecccccCchhhccccccCCC-CCCceEEeecCCC
Q 042307 558 LNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGF-PSLKHLHIQNNPY 611 (1314)
Q Consensus 558 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 611 (1314)
.+..+++|++|+++++.........+ ..+ ++|++|++++|+.
T Consensus 218 ----------~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 218 ----------PYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ----------GGTTCTTCCEEECTTSCCCBCSSSSC--CCCCTTCCEEECTTCCE
T ss_pred ----------hccCcccCCEeECCCCCCcccCHHHH--HhhhccCCEEEccCCCe
Confidence 23456788888888876544333333 345 4899999999874
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=9.1e-17 Score=175.88 Aligned_cols=180 Identities=26% Similarity=0.422 Sum_probs=150.0
Q ss_pred CCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcc-cccCccCcEEEcC
Q 042307 331 KNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSS-LHLLVNLRTLCLD 409 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~-~~~l~~L~~L~L~ 409 (1314)
...+.++++++.+..+|..+. ++++.|++++|.+ ..++...|.++++|++|++++|.+..+|.. |.++++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC-SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCC-CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 356789999999999987654 6799999999875 456666679999999999999999988665 6889999999999
Q ss_pred CCcCCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccc
Q 042307 410 NGVLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWE 486 (1314)
Q Consensus 410 ~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (1314)
+|.+..+ ..++++++|++|++++|.++.+|. .++.+++|++|++++| .+..++...++++++|++|++++|.+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-- 170 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK-- 170 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS--
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc--
Confidence 9998876 567899999999999999997764 4789999999999997 788888877889999999999999875
Q ss_pred cccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCc
Q 042307 487 TEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 525 (1314)
......+..+++|++|++++|.+..++..
T Consensus 171 ----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 171 ----------RVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp ----------CCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ----------EeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 22334577889999999999888776653
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=8.9e-17 Score=177.14 Aligned_cols=181 Identities=22% Similarity=0.271 Sum_probs=143.4
Q ss_pred cCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEc
Q 042307 329 TLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCL 408 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L 408 (1314)
.+.+++.++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.++.+|.. ..+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 46678889999999988887764 68889999988754 44445568899999999999988877654 78888999999
Q ss_pred CCCcCCCc-cccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccc
Q 042307 409 DNGVLGDV-AVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWE 486 (1314)
Q Consensus 409 ~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (1314)
++|.+..+ ..++.+++|++|++++|.++.+| ..++.+++|++|++++| .++.+|...+.++++|++|++++|.+..
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 162 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTE- 162 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSC-
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCc-
Confidence 98888776 56788888999999999888776 55888889999999887 6778887777888889999998888752
Q ss_pred cccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCc
Q 042307 487 TEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 525 (1314)
.....+..+++|+.|++++|.+..+|..
T Consensus 163 -----------l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 163 -----------LPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp -----------CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -----------cCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 2223456788888888888887766654
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=1.7e-18 Score=194.62 Aligned_cols=235 Identities=18% Similarity=0.184 Sum_probs=139.4
Q ss_pred ccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCC
Q 042307 333 CTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDN 410 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~ 410 (1314)
++..+++.+.+..++... .+++|++|++++|.+. .++...|.++++|++|++++|.+..+++ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 334455555554443332 4567777777777643 3444455777777777777777776544 77777777777777
Q ss_pred CcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccC
Q 042307 411 GVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQ 490 (1314)
Q Consensus 411 ~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 490 (1314)
|.++.+. ..++|++|++++|.++.+|. ..+++|++|++++| .+..+++..++.+++|++|++++|.+.
T Consensus 90 n~l~~l~---~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~------ 157 (317)
T 3o53_A 90 NYVQELL---VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID------ 157 (317)
T ss_dssp SEEEEEE---ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCC------
T ss_pred Ccccccc---CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCC------
Confidence 7765443 33677777777777776653 23677777777776 566666544677777777777777765
Q ss_pred CcccccccCcccc-cCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHH
Q 042307 491 SSSERSRASLHEL-KHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFF 569 (1314)
Q Consensus 491 ~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 569 (1314)
...+..+ ..+++|++|++++|.+..++... ...+++.++++.|.+..+++. +
T Consensus 158 ------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------~l~~L~~L~Ls~N~l~~l~~~-~ 210 (317)
T 3o53_A 158 ------TVNFAELAASSDTLEHLNLQYNFIYDVKGQV--------------------VFAKLKTLDLSSNKLAFMGPE-F 210 (317)
T ss_dssp ------EEEGGGGGGGTTTCCEEECTTSCCCEEECCC--------------------CCTTCCEEECCSSCCCEECGG-G
T ss_pred ------cccHHHHhhccCcCCEEECCCCcCccccccc--------------------ccccCCEEECCCCcCCcchhh-h
Confidence 2223333 35677777777777665543321 123344444444444444333 4
Q ss_pred hhhcccceeecccccCchhhccccccCCCCCCceEEeecCCC
Q 042307 570 MQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPY 611 (1314)
Q Consensus 570 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 611 (1314)
..+++|+.|+++++... .++..+ ..+++|+.|++++|+.
T Consensus 211 ~~l~~L~~L~L~~N~l~-~l~~~~--~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLV-LIEKAL--RFSQNLEHFDLRGNGF 249 (317)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTC--CCCTTCCEEECTTCCC
T ss_pred cccCcccEEECcCCccc-chhhHh--hcCCCCCEEEccCCCc
Confidence 45566666666655432 222222 3455666666665553
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1e-17 Score=187.72 Aligned_cols=182 Identities=17% Similarity=0.219 Sum_probs=143.4
Q ss_pred CccEEEcccCCCcc--cCCCc--------CCCCccEEEeCCCCCCcccCchhh-hCCCcccEEEecCCcCCCCCcccccC
Q 042307 332 NCTAISLHNCKIGE--LVDGL--------ECPRLKFFHISPREGFIKIPDNFF-TRLTELRVLDFTDMHLLSLPSSLHLL 400 (1314)
Q Consensus 332 ~l~~l~l~~~~l~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~f-~~l~~L~~L~Ls~n~~~~lp~~~~~l 400 (1314)
.++.+++++|.+.. +|... .+++|++|++++|.+...+|..+| ..+++|++|++++|.+..+|..+..+
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 37788888888744 44433 488999999999988777887764 88999999999999999888888877
Q ss_pred -----ccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcc---cchhh--cCCCCCCEEeeccCCCCCc---cchh
Q 042307 401 -----VNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQ---LPREI--GQLTRLRSLNLSSCYQLKA---ISSN 465 (1314)
Q Consensus 401 -----~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~---lp~~i--~~L~~L~~L~L~~~~~l~~---~~~~ 465 (1314)
++|++|++++|.+..+ ..++++++|++|++++|.+.. +|..+ +.+++|++|++++| .+.. ++..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHH
Confidence 8999999999998765 678999999999999998653 45555 88999999999998 6663 3444
Q ss_pred hhcCCCCCcEEEcCCCccccccccCCcccccccC-cccccCCCCCcEEEeEecCCCCCCCcc
Q 042307 466 VISNLSQLEELYLGDTFIQWETEGQSSSERSRAS-LHELKHLSSLNTLEIQVRDPKVLPKGF 526 (1314)
Q Consensus 466 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~ 526 (1314)
.+.++++|++|++++|.+. +.. ...+..+++|+.|++++|.++.+|..+
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLR------------DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp HHHTTCCCSEEECTTSCCC------------SSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred HHhcCCCCCEEECCCCcCC------------cccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence 4568899999999999885 212 234566789999999999888777654
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=8.5e-19 Score=210.05 Aligned_cols=250 Identities=18% Similarity=0.172 Sum_probs=126.8
Q ss_pred CCccEEEcccCCCcccCCC--c-CCCCccEEEeCCCCCCcc----cCchhhhCCCcccEEEecCCcCCCC-Ccc-cccCc
Q 042307 331 KNCTAISLHNCKIGELVDG--L-ECPRLKFFHISPREGFIK----IPDNFFTRLTELRVLDFTDMHLLSL-PSS-LHLLV 401 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~l~~~--~-~~~~L~~L~l~~~~~~~~----~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~-~~~l~ 401 (1314)
+++++|++++|.+...+.. + .+++|++|++++|.+... ++ ..|..+++|++|++++|.+... +.. +..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3456666666666443321 2 556666666666654321 22 2345666666666666665531 222 22233
Q ss_pred ----cCcEEEcCCCcCCC------ccccCCCCCCCEEEccCccCccc-chhh-----cCCCCCCEEeeccCCCCCccc--
Q 042307 402 ----NLRTLCLDNGVLGD------VAVIGELKQLEILSFQGSNIEQL-PREI-----GQLTRLRSLNLSSCYQLKAIS-- 463 (1314)
Q Consensus 402 ----~L~~L~L~~~~~~~------~~~~~~L~~L~~L~L~~~~i~~l-p~~i-----~~L~~L~~L~L~~~~~l~~~~-- 463 (1314)
+|++|++++|.+.. +..+.++++|++|++++|.++.. +..+ ...++|++|++++| .++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH
Confidence 46666666666553 24566666666666666665521 2222 12455666666665 344322
Q ss_pred --hhhhcCCCCCcEEEcCCCccccccccCCcccccccCccccc-----CCCCCcEEEeEecCCCCCCCcccccccceeEE
Q 042307 464 --SNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELK-----HLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKV 536 (1314)
Q Consensus 464 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 536 (1314)
...+..+++|++|++++|.+. ...+..+. ..++|++|+++++.+.........
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~------------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-------- 220 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDIN------------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-------- 220 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCH------------HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH--------
T ss_pred HHHHHHhhCCCCCEEECcCCCcc------------hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH--------
Confidence 122455566666666666553 11111111 244666666666655432100000
Q ss_pred EEccccCCCCCCccceEEEeecCCccchh-----hHHHhhhcccceeecccccCchh----hccccccCCCCCCceEEee
Q 042307 537 FIGDEWNWPDSYENQRILKLKLNASICLK-----DEFFMQLKGLEELWLDEVQGVEN----VVYELDREGFPSLKHLHIQ 607 (1314)
Q Consensus 537 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~ 607 (1314)
.+.....+++.++++.+.+.... +..+..+++|++|+++++..... +...+ ..+++|++|+++
T Consensus 221 ------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls 292 (461)
T 1z7x_W 221 ------GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL--RAKESLKELSLA 292 (461)
T ss_dssp ------HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCTTCCEEECT
T ss_pred ------HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH--hhCCCcceEECC
Confidence 00112234445555555443322 22233467888888887754432 22222 346788888888
Q ss_pred cCC
Q 042307 608 NNP 610 (1314)
Q Consensus 608 ~~~ 610 (1314)
+|.
T Consensus 293 ~n~ 295 (461)
T 1z7x_W 293 GNE 295 (461)
T ss_dssp TCC
T ss_pred CCC
Confidence 875
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=9.6e-17 Score=176.73 Aligned_cols=183 Identities=24% Similarity=0.288 Sum_probs=132.4
Q ss_pred ccCCCccEEEcccCCCcccCC-Cc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCc
Q 042307 328 DTLKNCTAISLHNCKIGELVD-GL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~ 404 (1314)
...+++++|++++|.+..++. .+ .+++|++|++++|.+ ..++...|.++++|++|++++|.+..++ ..|.++++|+
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC-CccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 345678888888888877775 33 788888888888864 3555555688888888888888888664 5688888888
Q ss_pred EEEcCCCcCCCc--cccCCCCCCCEEEccCccCcc--cchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCc----EE
Q 042307 405 TLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQ--LPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLE----EL 476 (1314)
Q Consensus 405 ~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~----~L 476 (1314)
+|++++|.+..+ ..++++++|++|++++|.++. +|..++.+++|++|++++| .++.++...+..+.+|+ +|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceee
Confidence 888888887765 357888888888888888875 6778888888888888887 66666655465555555 78
Q ss_pred EcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCc
Q 042307 477 YLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 477 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 525 (1314)
++++|.+...+ .......+|+.|++++|.+..+|..
T Consensus 183 ~ls~n~l~~~~-------------~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 183 DLSLNPMNFIQ-------------PGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp ECCSSCCCEEC-------------TTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred ecCCCcccccC-------------ccccCCCcccEEECCCCceeecCHh
Confidence 88888774221 1222333678888887777666543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=2.3e-16 Score=172.71 Aligned_cols=179 Identities=26% Similarity=0.400 Sum_probs=156.6
Q ss_pred ccCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCc
Q 042307 328 DTLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~ 404 (1314)
.....++.|++++|.+..++.. + .+++|++|++++|.+ ..++..+|.++++|++|++++|.+..+|. .|.++++|+
T Consensus 34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 4567899999999999999863 3 899999999999975 47888888999999999999999998865 578999999
Q ss_pred EEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 405 TLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 405 ~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
+|++++|.+..+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...+.++++|++|++++|
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC
Confidence 999999999876 5689999999999999999988765 799999999999998 788888877899999999999999
Q ss_pred ccccccccCCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 482 FIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
.+. ......+..+++|+.|++++|.+.
T Consensus 192 ~l~------------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 192 QLK------------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCS------------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCC------------cCCHHHhccccCCCEEEecCCCee
Confidence 886 223345778999999999988754
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=7.9e-17 Score=172.95 Aligned_cols=183 Identities=14% Similarity=0.219 Sum_probs=148.9
Q ss_pred cCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecC-CcCCCCC-cccccCccCc
Q 042307 329 TLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTD-MHLLSLP-SSLHLLVNLR 404 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~-n~~~~lp-~~~~~l~~L~ 404 (1314)
...+++.|++++|.+..++.. + .+++|++|++++|.....++...|.++++|++|++++ |.++.+| ..|.++++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 566899999999999888874 3 8899999999998745677777778999999999998 8998885 4688999999
Q ss_pred EEEcCCCcCCCccccCCCCCCC---EEEccCc-cCcccchh-hcCCCCCC-EEeeccCCCCCccchhhhcCCCCCcEEEc
Q 042307 405 TLCLDNGVLGDVAVIGELKQLE---ILSFQGS-NIEQLPRE-IGQLTRLR-SLNLSSCYQLKAISSNVISNLSQLEELYL 478 (1314)
Q Consensus 405 ~L~L~~~~~~~~~~~~~L~~L~---~L~L~~~-~i~~lp~~-i~~L~~L~-~L~L~~~~~l~~~~~~~l~~l~~L~~L~l 478 (1314)
+|++++|.++.++.++.+.+|+ +|++++| .++.+|.. ++.+++|+ +|++++| .++.+|...+.. .+|++|++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEEC
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEc
Confidence 9999999988876688888888 9999999 88888754 88899999 9999987 677888775554 78999999
Q ss_pred CCCc-cccccccCCcccccccCcccccCC-CCCcEEEeEecCCCCCCCc
Q 042307 479 GDTF-IQWETEGQSSSERSRASLHELKHL-SSLNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 479 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~ 525 (1314)
++|. +. ......+..+ ++|+.|++++|.+..+|..
T Consensus 187 ~~n~~l~------------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 187 NKNKYLT------------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp TTCTTCC------------EECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCCCCcc------------cCCHHHhhccccCCcEEECCCCccccCChh
Confidence 9984 65 2223456777 8899999998888777654
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=3.3e-16 Score=172.39 Aligned_cols=178 Identities=23% Similarity=0.314 Sum_probs=138.4
Q ss_pred EEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCcC
Q 042307 335 AISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGVL 413 (1314)
Q Consensus 335 ~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~~ 413 (1314)
.++..+..+..+|..+. ++|++|++++|.+ ..++...|.++++|++|++++|.+..++. .|.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCC-CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcc-cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 46667777888887653 5799999999975 45555567899999999999999998754 789999999999999998
Q ss_pred CCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCc--cchhhhcCCCCCcEEEcCCCccccccc
Q 042307 414 GDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKA--ISSNVISNLSQLEELYLGDTFIQWETE 488 (1314)
Q Consensus 414 ~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (1314)
..+ ..++++++|++|++++|.+..++. .++.+++|++|++++| .+.. +|.. ++++++|++|++++|.+...+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~- 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY- 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcCC-
Confidence 765 578999999999999999987765 6899999999999997 5665 4555 889999999999999886221
Q ss_pred cCCcccccccCcccccCCCCCc-EEEeEecCCCCCCCc
Q 042307 489 GQSSSERSRASLHELKHLSSLN-TLEIQVRDPKVLPKG 525 (1314)
Q Consensus 489 ~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~ 525 (1314)
...+..+..++.|. .|++++|.+..++..
T Consensus 166 --------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 166 --------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp --------GGGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred --------HHHhhhhhhccccceeeecCCCcccccCcc
Confidence 11233344444444 788888887666543
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.5e-15 Score=183.74 Aligned_cols=238 Identities=19% Similarity=0.115 Sum_probs=184.8
Q ss_pred ccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEE
Q 042307 328 DTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLC 407 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~ 407 (1314)
...++++.|++++|.+..+|. .+++|++|++++|.+ ..+|. .+++|++|++++|.++.+|. .+++|++|+
T Consensus 58 ~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~ 127 (622)
T 3g06_A 58 CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQL-TSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLW 127 (622)
T ss_dssp CCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCC-SCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEE
T ss_pred hhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcC-CcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEE
Confidence 344799999999999999988 689999999999985 46775 67999999999999999987 678899999
Q ss_pred cCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccc
Q 042307 408 LDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWET 487 (1314)
Q Consensus 408 L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (1314)
+++|.++.++. .+++|++|++++|.++.+|. .+.+|+.|++++| .+..+| ..+++|++|++++|.+...
T Consensus 128 L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~l- 196 (622)
T 3g06_A 128 IFGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLASL- 196 (622)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCC-
T ss_pred CCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCCC-
Confidence 99999887744 35899999999999999886 4578999999997 788888 3578999999999988521
Q ss_pred ccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhH
Q 042307 488 EGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDE 567 (1314)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 567 (1314)
+. .+++|+.|++++|.+..+|.. ..+++.++++.|.+..++
T Consensus 197 ------------~~---~~~~L~~L~L~~N~l~~l~~~----------------------~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 197 ------------PT---LPSELYKLWAYNNRLTSLPAL----------------------PSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp ------------CC---CCTTCCEEECCSSCCSSCCCC----------------------CTTCCEEECCSSCCSCCC--
T ss_pred ------------CC---ccchhhEEECcCCcccccCCC----------------------CCCCCEEEccCCccCcCC--
Confidence 11 247899999999988877643 234566677766665544
Q ss_pred HHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCCccceecccCcc
Q 042307 568 FFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFPLLESLSLSNLM 639 (1314)
Q Consensus 568 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 639 (1314)
..+++|+.|+++++... .++. .+++|+.|++++|... .++ ..+..+++|+.|++++++
T Consensus 238 --~~l~~L~~L~Ls~N~L~-~lp~-----~~~~L~~L~Ls~N~L~-~lp-----~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLT-SLPM-----LPSGLLSLSVYRNQLT-RLP-----ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCCTTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSCCC-SCC-----GGGGGSCTTCEEECCSCC
T ss_pred --CCCCcCcEEECCCCCCC-cCCc-----ccccCcEEeCCCCCCC-cCC-----HHHhhccccCEEEecCCC
Confidence 34578888888876532 2221 4678999999888643 222 135567888889888854
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=5.2e-16 Score=173.02 Aligned_cols=174 Identities=19% Similarity=0.265 Sum_probs=137.9
Q ss_pred cCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEc
Q 042307 329 TLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCL 408 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L 408 (1314)
.++++++|++++|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+| .+.++++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 46678888888888888875458888888888888653 4444 588888888888888888775 5888888888888
Q ss_pred CCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccc
Q 042307 409 DNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETE 488 (1314)
Q Consensus 409 ~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (1314)
++|.+..+..++.+++|++|++++|.++.+|. ++.+++|++|++++| .+..++. +.++++|++|++++|.+..
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~--- 187 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD--- 187 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC---
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc---
Confidence 88888887778888888888888888887766 888888888888887 6777766 7888888888888887741
Q ss_pred cCCcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 489 GQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 489 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
+..+..+++|++|++++|.+..++.
T Consensus 188 -----------~~~l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 188 -----------ISPLASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp -----------CGGGGGCTTCCEEECTTSCCCBCGG
T ss_pred -----------ChhhcCCCCCCEEEccCCccCcccc
Confidence 1226778888888888888776664
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=7.6e-16 Score=166.42 Aligned_cols=176 Identities=23% Similarity=0.341 Sum_probs=150.8
Q ss_pred CccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEEEcCC
Q 042307 332 NCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLDN 410 (1314)
Q Consensus 332 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~~ 410 (1314)
..++++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46789999999999998765 68999999999864 455555799999999999999999874 4589999999999999
Q ss_pred CcCCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccc
Q 042307 411 GVLGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWET 487 (1314)
Q Consensus 411 ~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (1314)
|.++.+ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .++.++...++++++|++|++++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ--- 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC---
Confidence 999876 5688999999999999999988765 688999999999998 788888876899999999999999886
Q ss_pred ccCCcccccccCcccccCCCCCcEEEeEecCCCCC
Q 042307 488 EGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVL 522 (1314)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 522 (1314)
......+..+++|+.|++++|.+...
T Consensus 169 ---------~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 ---------SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---------ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 33334678899999999999887654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=1.7e-15 Score=165.74 Aligned_cols=179 Identities=25% Similarity=0.343 Sum_probs=153.6
Q ss_pred CcccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCc
Q 042307 326 DRDTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLR 404 (1314)
Q Consensus 326 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~ 404 (1314)
....+++++.+++.+|.+..++....+++|++|++++|.+.. ++ .+..+++|++|++++|.+..+|. .|.++++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 345678899999999999988876699999999999998643 33 36899999999999999998855 479999999
Q ss_pred EEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 405 TLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 405 ~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
+|++++|.+..+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...++++++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC
Confidence 999999999876 4589999999999999999988765 689999999999998 788888876889999999999999
Q ss_pred ccccccccCCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 482 FIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
.+. +..+..+..+++|+.|++++|.+.
T Consensus 192 ~l~------------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 192 QLK------------SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCS------------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCC------------ccCHHHHhCCcCCCEEEccCCCcc
Confidence 886 333446788999999999988754
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=4.3e-16 Score=167.19 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=112.0
Q ss_pred CcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCc-CCCCCc-ccccCccCcEEEcCC-CcCCCc--c
Q 042307 343 IGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMH-LLSLPS-SLHLLVNLRTLCLDN-GVLGDV--A 417 (1314)
Q Consensus 343 l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~-~~~lp~-~~~~l~~L~~L~L~~-~~~~~~--~ 417 (1314)
+..+|. -.+++++|++++|.+ ..+|...|.++++|++|++++|. ++.+|. .|.++++|++|++++ |.++.+ .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCC-SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcc-eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 777777 334789999998875 45666667889999999999996 887755 688899999999988 888765 4
Q ss_pred ccCCCCCCCEEEccCccCcccchhhcCCCCCC---EEeeccCCCCCccchhhhcCCCCCc-EEEcCCCccc
Q 042307 418 VIGELKQLEILSFQGSNIEQLPREIGQLTRLR---SLNLSSCYQLKAISSNVISNLSQLE-ELYLGDTFIQ 484 (1314)
Q Consensus 418 ~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~---~L~L~~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~ 484 (1314)
.|+++++|++|++++|.++.+|. ++.+++|+ +|++++|..++.++...+.++++|+ +|++++|.+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 68888899999999998888887 88888888 8999887678888877688888888 8888888774
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=3.9e-17 Score=182.98 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=102.7
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC--CCCcccc-------cCccCcEEEcCCCcCCC--cccc
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL--SLPSSLH-------LLVNLRTLCLDNGVLGD--VAVI 419 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~--~lp~~~~-------~l~~L~~L~L~~~~~~~--~~~~ 419 (1314)
..++|+.|++++|.+ .+|..++.. |++|++++|.+. .+|..+. ++++|++|++++|.+.. +..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 344566677777765 666665332 777777777775 3565554 67778888888877763 2333
Q ss_pred --CCCCCCCEEEccCccCcccchhhcCC-----CCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCc
Q 042307 420 --GELKQLEILSFQGSNIEQLPREIGQL-----TRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSS 492 (1314)
Q Consensus 420 --~~L~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 492 (1314)
+.+++|++|++++|.++.+|..++.+ ++|++|++++| .+..+++..++++++|++|++++|.+...
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------ 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGE------ 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHH------
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcc------
Confidence 77888888888888877767777666 78888888886 56666655577888888888887765310
Q ss_pred ccccccCcccc--cCCCCCcEEEeEecCCC
Q 042307 493 SERSRASLHEL--KHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 493 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~ 520 (1314)
...+..+ ..+++|++|++++|.+.
T Consensus 189 ----~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 189 ----RGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp ----HHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred ----hHHHHHHHhccCCCCCEEECCCCcCc
Confidence 0012223 66777777777776654
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=1.1e-15 Score=168.75 Aligned_cols=176 Identities=24% Similarity=0.352 Sum_probs=154.2
Q ss_pred cccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEE
Q 042307 327 RDTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTL 406 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L 406 (1314)
...+++++.+++++|.+..++....+++|++|++++|.+. .++. |.++++|++|++++|.+..+|. +.++++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 3457789999999999999987558999999999999864 4444 6999999999999999998764 8999999999
Q ss_pred EcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccc
Q 042307 407 CLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWE 486 (1314)
Q Consensus 407 ~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (1314)
++++|.+..+..++.+++|++|++++|.++.+ ..++.+++|++|++++| .+..+++ +..+++|++|++++|.+.
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~-- 191 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS-- 191 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC--
Confidence 99999999998899999999999999999988 56999999999999998 7888876 899999999999999885
Q ss_pred cccCCcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 487 TEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
.+..+..+++|+.|++++|.+...|.
T Consensus 192 ------------~l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 192 ------------DLRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ------------BCGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred ------------CChhhccCCCCCEEECcCCcccCCcc
Confidence 12358899999999999998766543
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.9e-15 Score=166.48 Aligned_cols=176 Identities=20% Similarity=0.223 Sum_probs=153.4
Q ss_pred ccCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcE
Q 042307 328 DTLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRT 405 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~ 405 (1314)
...+.++.|++++|.+..++.. + .+++|++|++++|.+. .++. +..+++|++|++++|.+..+|..+.++++|++
T Consensus 28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104 (290)
T ss_dssp CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCE
T ss_pred CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC--CCCCCcCCEEECCCCcCCcCchhhccCCCCCE
Confidence 4567899999999999888643 3 8999999999999864 3443 27899999999999999999999999999999
Q ss_pred EEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCc
Q 042307 406 LCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTF 482 (1314)
Q Consensus 406 L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (1314)
|++++|.++.+ ..|+++++|++|++++|.++.+|.. +..+++|++|++++| .++.+|...+.++++|++|++++|.
T Consensus 105 L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence 99999999876 6699999999999999999988765 689999999999998 7899998878899999999999998
Q ss_pred cccccccCCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 483 IQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
+. ..+..+..+.+|+.+++++|...
T Consensus 184 l~-------------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 184 LY-------------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CC-------------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CC-------------ccChhhcccccCCeEEeCCCCcc
Confidence 85 34456667789999999988753
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=3e-15 Score=166.85 Aligned_cols=180 Identities=20% Similarity=0.286 Sum_probs=157.1
Q ss_pred ccCcccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccC
Q 042307 324 LLDRDTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNL 403 (1314)
Q Consensus 324 ~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L 403 (1314)
++.-..+++++.|++++|.+..++....+++|++|++++|.+. .++ .|..+++|++|++++|.+..+|. +.++++|
T Consensus 56 l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 131 (308)
T 1h6u_A 56 IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNL 131 (308)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTC
T ss_pred chhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC-Cch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCC
Confidence 3344568899999999999999988449999999999999854 444 36899999999999999999875 9999999
Q ss_pred cEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcc
Q 042307 404 RTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 404 ~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
++|++++|.+..+..++++++|++|++++|.++.+|. +..+++|++|++++| .+..++. +..+++|++|++++|.+
T Consensus 132 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCC
T ss_pred CEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCcc
Confidence 9999999999988779999999999999999999877 999999999999998 7888876 88999999999999988
Q ss_pred ccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCc
Q 042307 484 QWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 525 (1314)
. . .+ .+..+++|+.|++++|.+...|..
T Consensus 208 ~------------~-~~-~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 208 S------------D-VS-PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp C------------B-CG-GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred C------------c-cc-cccCCCCCCEEEccCCeeecCCee
Confidence 5 1 11 478999999999999988766643
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=4.2e-16 Score=185.50 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=53.6
Q ss_pred CccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCccccCCCCCCCEEEccCc
Q 042307 354 RLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSFQGS 433 (1314)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~ 433 (1314)
+|++|++++|.+. .+++..|..+++|++|+|++|.+..+++ |..+++|++|++++|.++.+. ..++|++|++++|
T Consensus 35 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N 109 (487)
T 3oja_A 35 NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANN 109 (487)
T ss_dssp GCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSS
T ss_pred CccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCC
Confidence 4444454444432 2222233444555555555554443322 444445555555544443321 1244455555555
Q ss_pred cCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcc
Q 042307 434 NIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 434 ~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
.++.+|. ..+++|++|++++| .+..+++..++++++|++|++++|.+
T Consensus 110 ~l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 110 NISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp CCCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred cCCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCC
Confidence 4444432 13344555555444 33333332244444555555554444
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=6.6e-16 Score=169.08 Aligned_cols=174 Identities=23% Similarity=0.310 Sum_probs=126.5
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcC
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVL 413 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~ 413 (1314)
..+++..+.+..+.....+++|+.|++.+|.. ..++. +..+++|++|++++|.+..++ .+.++++|++|++++|.+
T Consensus 22 ~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i-~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDI-KSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHHTCSCTTSEECHHHHTTCCEEECTTSCC-CCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC
T ss_pred HHHHhcCcccccccccccccceeeeeeCCCCc-ccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc
Confidence 33444555555554444777888888888764 33333 577888888888888887764 678888888888888888
Q ss_pred CCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccC
Q 042307 414 GDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQ 490 (1314)
Q Consensus 414 ~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 490 (1314)
+.+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...++++++|++|++++|.+.
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------ 170 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ------ 170 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC------
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC------
Confidence 765 3478888888888888888877554 678888888888887 677777766778888888888888775
Q ss_pred CcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 491 SSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 491 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
......+..+++|+.|++++|.+..++.
T Consensus 171 ------~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 171 ------SLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ------ccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 2233346777888888888777665543
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=2.2e-16 Score=177.30 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=172.6
Q ss_pred CCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEE
Q 042307 330 LKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLC 407 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~ 407 (1314)
.+++++|++++|.+..++.. + .+++|++|++++|.+....+ |..+++|++|++++|.++.+| ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence 45789999999999888743 3 89999999999998654333 689999999999999988765 348899999
Q ss_pred cCCCcCCCccccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhh-cCCCCCcEEEcCCCcccc
Q 042307 408 LDNGVLGDVAVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVI-SNLSQLEELYLGDTFIQW 485 (1314)
Q Consensus 408 L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~ 485 (1314)
+++|.+..+.. ..+++|++|++++|.++.++ ..++.+++|++|++++| .+..++...+ ..+++|++|++++|.+..
T Consensus 106 l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99999877632 34788999999999998774 47888999999999997 6666654434 478999999999998752
Q ss_pred ccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchh
Q 042307 486 ETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLK 565 (1314)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 565 (1314)
. .....+++|++|++++|.+..+|..+ ....+++.++++.|.+..++
T Consensus 184 ~--------------~~~~~l~~L~~L~Ls~N~l~~l~~~~-------------------~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 184 V--------------KGQVVFAKLKTLDLSSNKLAFMGPEF-------------------QSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp E--------------ECCCCCTTCCEEECCSSCCCEECGGG-------------------GGGTTCSEEECTTSCCCEEC
T ss_pred c--------------ccccccccCCEEECCCCcCCcchhhh-------------------cccCcccEEECcCCcccchh
Confidence 1 23335888999999999888776653 12344556666666665544
Q ss_pred hHHHhhhcccceeecccccCc-hhhccccccCCCCCCceEEeecCCC
Q 042307 566 DEFFMQLKGLEELWLDEVQGV-ENVVYELDREGFPSLKHLHIQNNPY 611 (1314)
Q Consensus 566 ~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~ 611 (1314)
. .+..+++|+.|+++++... ......+ ..+++|+.+++.++..
T Consensus 231 ~-~~~~l~~L~~L~l~~N~~~~~~~~~~~--~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 231 K-ALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQTVKK 274 (317)
T ss_dssp T-TCCCCTTCCEEECTTCCCBHHHHHHHH--HTCHHHHHHHHHHHHH
T ss_pred h-HhhcCCCCCEEEccCCCccCcCHHHHH--hccccceEEECCCchh
Confidence 3 3556677777777776654 2222222 3466677777765543
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=8.3e-16 Score=182.93 Aligned_cols=214 Identities=18% Similarity=0.230 Sum_probs=170.3
Q ss_pred CCCccEEEcccCCCcccCC-Cc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEE
Q 042307 330 LKNCTAISLHNCKIGELVD-GL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLC 407 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~ 407 (1314)
.++++.|++++|.+..+++ .+ .+++|++|++++|.+....| |..+++|++|+|++|.+..+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 4479999999999988875 34 89999999999998655444 6899999999999999987764 38999999
Q ss_pred cCCCcCCCccccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhhc-CCCCCcEEEcCCCcccc
Q 042307 408 LDNGVLGDVAVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVIS-NLSQLEELYLGDTFIQW 485 (1314)
Q Consensus 408 L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~ 485 (1314)
+++|.+..+.. ..+++|++|++++|.++.+ |..++.+++|++|++++| .+..+++..+. .+++|++|++++|.+..
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999987633 3578999999999999966 667899999999999998 56665444354 79999999999998852
Q ss_pred ccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchh
Q 042307 486 ETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLK 565 (1314)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 565 (1314)
. .....+++|+.|++++|.+..+|..
T Consensus 184 ~--------------~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------------------------- 209 (487)
T 3oja_A 184 V--------------KGQVVFAKLKTLDLSSNKLAFMGPE---------------------------------------- 209 (487)
T ss_dssp E--------------ECCCCCTTCCEEECCSSCCCEECGG----------------------------------------
T ss_pred c--------------cccccCCCCCEEECCCCCCCCCCHh----------------------------------------
Confidence 1 2344688999999999887765543
Q ss_pred hHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCc
Q 042307 566 DEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYL 612 (1314)
Q Consensus 566 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 612 (1314)
+..+++|+.|+++++.... ++..+ ..+++|+.|++++|+..
T Consensus 210 ---~~~l~~L~~L~Ls~N~l~~-lp~~l--~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 210 ---FQSAAGVTWISLRNNKLVL-IEKAL--RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ---GGGGTTCSEEECTTSCCCE-ECTTC--CCCTTCCEEECTTCCBC
T ss_pred ---HcCCCCccEEEecCCcCcc-cchhh--ccCCCCCEEEcCCCCCc
Confidence 3456788888888766442 33333 45789999999998754
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=9.6e-15 Score=157.76 Aligned_cols=155 Identities=23% Similarity=0.393 Sum_probs=137.6
Q ss_pred ccCCCccEEEcccCCCcccCCC-c-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCc
Q 042307 328 DTLKNCTAISLHNCKIGELVDG-L-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLR 404 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~ 404 (1314)
...+.++.|++++|.+..++.. + .+++|++|++++|.+. .++...|.++++|++|++++|.+..+| ..|.++++|+
T Consensus 32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 4567899999999999888764 3 8999999999999864 456666799999999999999999885 4689999999
Q ss_pred EEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 405 TLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 405 ~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
+|++++|.++.+ ..++++++|++|++++|.++.+|. .++.+++|++|++++| .+..++...+.++++|++|++++|
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 999999999876 458999999999999999998876 6899999999999998 788888877999999999999999
Q ss_pred ccc
Q 042307 482 FIQ 484 (1314)
Q Consensus 482 ~~~ 484 (1314)
.+.
T Consensus 190 ~~~ 192 (251)
T 3m19_A 190 QFD 192 (251)
T ss_dssp CBC
T ss_pred cee
Confidence 875
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=170.39 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=129.1
Q ss_pred CccEEEcccCCCcc-----cCCCcCCCCccEEEeCCCCCCcccCchhh-hCCCcccEEEecCCcCCCC-C----cccccC
Q 042307 332 NCTAISLHNCKIGE-----LVDGLECPRLKFFHISPREGFIKIPDNFF-TRLTELRVLDFTDMHLLSL-P----SSLHLL 400 (1314)
Q Consensus 332 ~l~~l~l~~~~l~~-----l~~~~~~~~L~~L~l~~~~~~~~~~~~~f-~~l~~L~~L~Ls~n~~~~l-p----~~~~~l 400 (1314)
.++.+.+.++.+.. +.....+++|++|++++|.+....|..++ ..+++|++|++++|.+... | ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46677777766532 22233556788899988887767776655 7888899999999888743 3 334578
Q ss_pred ccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcc---cchh--hcCCCCCCEEeeccCCCCCccchh---hhcCC
Q 042307 401 VNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQ---LPRE--IGQLTRLRSLNLSSCYQLKAISSN---VISNL 470 (1314)
Q Consensus 401 ~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~---lp~~--i~~L~~L~~L~L~~~~~l~~~~~~---~l~~l 470 (1314)
++|++|++++|.+..+ ..++++++|++|++++|.+.. +|.. ++.+++|++|++++| .++.++.. .++++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcC
Confidence 8899999988888764 578888889999999888653 4322 367888999999887 56655542 35678
Q ss_pred CCCcEEEcCCCccccccccCCcccccccCcccccCC---CCCcEEEeEecCCCCCCCc
Q 042307 471 SQLEELYLGDTFIQWETEGQSSSERSRASLHELKHL---SSLNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~ 525 (1314)
++|++|++++|.+. ...+..+..+ ++|++|++++|.++.+|..
T Consensus 224 ~~L~~L~Ls~N~l~------------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 269 (310)
T 4glp_A 224 VQPHSLDLSHNSLR------------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG 269 (310)
T ss_dssp CCCSSEECTTSCCC------------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred CCCCEEECCCCCCC------------ccchhhHHhccCcCcCCEEECCCCCCCchhhh
Confidence 88899999888875 2223334443 6888888888888777654
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=1.2e-14 Score=165.62 Aligned_cols=176 Identities=16% Similarity=0.177 Sum_probs=120.1
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCC-CCc-ccccCccCcE-EEcCC
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLS-LPS-SLHLLVNLRT-LCLDN 410 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~-lp~-~~~~l~~L~~-L~L~~ 410 (1314)
++++.+++++.++|..+ .++++.|++++|.+ ..+|.+.|.++++|++|+|++|.+.+ +|. .|.++++|+. +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 46777888888888765 35788888888874 56777777888888888888888753 543 5778877665 55566
Q ss_pred CcCCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCC-CCcEEEcCCCccccc
Q 042307 411 GVLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLS-QLEELYLGDTFIQWE 486 (1314)
Q Consensus 411 ~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 486 (1314)
|.+..+ ..|+++++|++|++++|.++.+|. .+....++.+|++.++..+..++...+..+. .+++|++++|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence 777654 567888888888888888887654 3455666778888777677777766555553 57778887777642
Q ss_pred cccCCcccccccCcccccCCCCCcEEEeE-ecCCCCCCC
Q 042307 487 TEGQSSSERSRASLHELKHLSSLNTLEIQ-VRDPKVLPK 524 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~ 524 (1314)
++.......+|+.|.+. ++.+..+|.
T Consensus 169 ------------i~~~~f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 169 ------------IHNSAFNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp ------------ECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred ------------CChhhccccchhHHhhccCCcccCCCH
Confidence 22223334456666664 344554443
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=7.9e-15 Score=177.48 Aligned_cols=176 Identities=25% Similarity=0.348 Sum_probs=154.0
Q ss_pred cccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEE
Q 042307 327 RDTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTL 406 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L 406 (1314)
...+++++.|++++|.+..++....+++|+.|+|++|.+.. +++ |..+++|++|+|++|.+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 44577899999999999999876699999999999998643 444 689999999999999999876 78999999999
Q ss_pred EcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccc
Q 042307 407 CLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWE 486 (1314)
Q Consensus 407 ~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (1314)
+|++|.+..+..++.+++|++|+|++|.++.+ ..++.+++|++|+|++| .+..+++ +..+++|++|+|++|.+.
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~-- 188 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS-- 188 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC--
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCC--
Confidence 99999999998899999999999999999988 56999999999999998 6777776 899999999999999885
Q ss_pred cccCCcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 487 TEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
. +..+..+++|+.|++++|.+...|.
T Consensus 189 ----------~--l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 ----------D--LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ----------B--CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ----------C--ChHHccCCCCCEEEccCCcCcCCcc
Confidence 1 2468889999999999988766554
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=2.3e-14 Score=151.82 Aligned_cols=149 Identities=25% Similarity=0.310 Sum_probs=130.9
Q ss_pred ccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCC
Q 042307 333 CTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 333 l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~ 411 (1314)
.+.++.+++.+..+|..+. ++|++|++++|.+.. +++..|.++++|++|+|++|.+..+|. .|.++++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4579999999999998764 889999999998654 444556999999999999999998865 4789999999999999
Q ss_pred cCCCc--cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 412 VLGDV--AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 412 ~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
.++.+ ..++.+++|++|++++|.++.+|..+..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99876 4578999999999999999999999999999999999997 788888777889999999999999774
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=152.32 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=123.7
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~ 412 (1314)
+.+++++|.+..+|..+ ...++.|++++|.+....+..+|.++++|++|+|++|.++.++. .|.++++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 58999999999998765 34578999999987555566677899999999999999988754 78999999999999999
Q ss_pred CCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+..+ ..|+++++|++|+|++|.++.+ |..+..+++|++|+|++| .++.+++..+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8875 4588899999999999998876 677888999999999987 677776555888899999999888764
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.5e-14 Score=151.26 Aligned_cols=165 Identities=23% Similarity=0.353 Sum_probs=134.2
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcc-cccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSS-LHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~-~~~l~~L~~L~L~~~~ 412 (1314)
+.++.+++.+..+|..+ .++|++|++++|.+. .++...|.++++|++|++++|.+..+|.. |.++++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46788888888888665 458999999998754 66777778999999999999999988654 7889999999999999
Q ss_pred CCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccccc
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEG 489 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (1314)
++.+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...+.++++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee-----
Confidence 8876 4478999999999999999988765 688999999999997 677888776888999999999988663
Q ss_pred CCcccccccCcccccCCCCCcEEEeEecCCC
Q 042307 490 QSSSERSRASLHELKHLSSLNTLEIQVRDPK 520 (1314)
Q Consensus 490 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 520 (1314)
..+++|+.|++..+.+.
T Consensus 162 --------------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 --------------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp --------------CCTTTTHHHHHHHHHCT
T ss_pred --------------cCCCCHHHHHHHHHhCC
Confidence 34567777777766544
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=2.6e-14 Score=150.22 Aligned_cols=148 Identities=19% Similarity=0.302 Sum_probs=124.0
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~ 412 (1314)
+.++++++.+..+|..+. ++++.|++++|.+ ..++...|.++++|++|+|++|.+..+ |..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578899999999988654 6899999998875 456666678899999999999999877 7789999999999999999
Q ss_pred CCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
++.+ ..|+++++|++|+|++|.++.+ |..+..+++|++|+|++| .++.++...+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8876 4478899999999999998876 567888999999999987 678888776888889999999888764
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=3.1e-15 Score=170.42 Aligned_cols=103 Identities=18% Similarity=0.277 Sum_probs=53.4
Q ss_pred CcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCC--c-cccCCCCCCCEEEccCccCc-ccchhhcCCCCCCEEee
Q 042307 378 TELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGD--V-AVIGELKQLEILSFQGSNIE-QLPREIGQLTRLRSLNL 453 (1314)
Q Consensus 378 ~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~--~-~~~~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L 453 (1314)
.++++|++++|.+...+..+.++++|++|++++|.+.. + ..++++++|++|++++|.++ ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 45555555555555444444455555555555555432 2 34455555555555555554 34555555555555555
Q ss_pred ccCCCCCc--cchhhhcCCCCCcEEEcCCC
Q 042307 454 SSCYQLKA--ISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 454 ~~~~~l~~--~~~~~l~~l~~L~~L~l~~~ 481 (1314)
++|..++. ++.. +.++++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 55533432 2222 455555555555555
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=3.6e-14 Score=156.48 Aligned_cols=180 Identities=22% Similarity=0.251 Sum_probs=146.8
Q ss_pred EEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCC
Q 042307 335 AISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLG 414 (1314)
Q Consensus 335 ~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~ 414 (1314)
.+.+..+.+..+.....+++|+.|++++|.+ ..++. +..+++|++|++++|.+..++. +.++++|++|++++|.+.
T Consensus 28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i-~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHTTCSCTTSEECHHHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred HHHhcCCCcccccchhhcCcccEEEccCCCc-ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC
Confidence 3345555555554444788999999999875 34554 5889999999999999999877 999999999999999999
Q ss_pred CccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCccc
Q 042307 415 DVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSE 494 (1314)
Q Consensus 415 ~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 494 (1314)
.++.++++++|++|++++|.++.++ .++.+++|++|++++| .+..++. ++++++|++|++++|.+.
T Consensus 104 ~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~---------- 169 (291)
T 1h6t_A 104 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS---------- 169 (291)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCC----------
T ss_pred CChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccc----------
Confidence 9988999999999999999999885 5899999999999998 6777743 899999999999999885
Q ss_pred ccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEE
Q 042307 495 RSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKV 536 (1314)
Q Consensus 495 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 536 (1314)
. .. .+..+++|+.|++++|.+..++......+|+.+.+
T Consensus 170 --~-~~-~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 170 --D-IV-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207 (291)
T ss_dssp --C-CG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred --c-ch-hhcCCCccCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 1 22 28899999999999999887765333344444433
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=6.5e-15 Score=159.58 Aligned_cols=173 Identities=21% Similarity=0.245 Sum_probs=141.5
Q ss_pred cCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEc
Q 042307 329 TLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCL 408 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L 408 (1314)
.+.++..+++.++.+.+++....+++|++|++++|.+ ..++ . +..+++|++|++++|.+..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i-~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI-QSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC-CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc-ccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 4556677778888888887544888999999998864 4555 3 5889999999999999998877 889999999999
Q ss_pred CCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccc
Q 042307 409 DNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETE 488 (1314)
Q Consensus 409 ~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (1314)
++|.++.+..+.. .+|++|++++|.++.+| .++.+++|++|++++| .++.++. ++.+++|++|++++|.+.
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~---- 163 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEIT---- 163 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCC----
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCc----
Confidence 9999888766666 89999999999998876 4889999999999997 6788863 888999999999999885
Q ss_pred cCCcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 489 GQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 489 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
.. ..+..+++|+.|++++|.+...|.
T Consensus 164 --------~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 164 --------NT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp --------BC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred --------ch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 11 567888999999999888765543
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=2e-14 Score=163.82 Aligned_cols=184 Identities=22% Similarity=0.211 Sum_probs=150.6
Q ss_pred cccCCCccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccE-EEecCCcCCCC-CcccccCcc
Q 042307 327 RDTLKNCTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRV-LDFTDMHLLSL-PSSLHLLVN 402 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~-L~Ls~n~~~~l-p~~~~~l~~ 402 (1314)
.++.++++.|++++|.+..+|... ++++|++|+|++|.+...+|..+|.++.+++. +.+.+|.+..+ |..|.++++
T Consensus 26 ~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 26 SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred cCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 345678999999999999999753 89999999999999878889888999988765 67778999988 567999999
Q ss_pred CcEEEcCCCcCCCc--cccCCCCCCCEEEccCc-cCcccch-hhcCC-CCCCEEeeccCCCCCccchhhhcCCCCCcEEE
Q 042307 403 LRTLCLDNGVLGDV--AVIGELKQLEILSFQGS-NIEQLPR-EIGQL-TRLRSLNLSSCYQLKAISSNVISNLSQLEELY 477 (1314)
Q Consensus 403 L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~-~i~~lp~-~i~~L-~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~ 477 (1314)
|++|++++|.+..+ ..+....++.+|++.++ .+..+|. .+..+ ..+++|++++| .++.++.. +....+|++|+
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~-~f~~~~L~~l~ 183 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNS-AFNGTQLDELN 183 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT-SSTTEEEEEEE
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChh-hccccchhHHh
Confidence 99999999998876 34556677889999774 7888865 35555 46899999997 78999887 45677899999
Q ss_pred cCC-CccccccccCCcccccccCc-ccccCCCCCcEEEeEecCCCCCCCc
Q 042307 478 LGD-TFIQWETEGQSSSERSRASL-HELKHLSSLNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 478 l~~-~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~ 525 (1314)
+.+ |.+. ..+ ..+..+++|+.|++++|.++.+|.+
T Consensus 184 l~~~n~l~-------------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 184 LSDNNNLE-------------ELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp CTTCTTCC-------------CCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred hccCCccc-------------CCCHHHhccCcccchhhcCCCCcCccChh
Confidence 975 4453 222 3578899999999999999888764
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.5e-14 Score=147.85 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=92.3
Q ss_pred ccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCC-CCcccccCccCcEE
Q 042307 328 DTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLS-LPSSLHLLVNLRTL 406 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~-lp~~~~~l~~L~~L 406 (1314)
..+++++.+++++|.+..+|....+++|++|++++|.. ..+ . .|..+++|++|++++|.+.. .|..++++++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~-~~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA-TNY-N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC-SCC-G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC-Ccc-h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34566777777777777776433667777777776632 222 2 24666777777777776664 45566666666666
Q ss_pred EcCCCcCCC--ccccCCCCCCCEEEccCcc-CcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcc
Q 042307 407 CLDNGVLGD--VAVIGELKQLEILSFQGSN-IEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 407 ~L~~~~~~~--~~~~~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
++++|.+.. +..++++++|++|++++|. ++.+| .++.+++|++|++++| .+..++. +..+++|++|++++|.+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCccc
Confidence 666666654 3556666666666666665 55665 4666666666666665 4555552 56666666666666654
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.2e-13 Score=164.73 Aligned_cols=195 Identities=20% Similarity=0.239 Sum_probs=145.4
Q ss_pred CCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCC
Q 042307 331 KNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDN 410 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~ 410 (1314)
.+++.|++++|.+..+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.++.+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 37889999999998898866 478999999999865 677 347899999999999999988 665 899999999
Q ss_pred CcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccC
Q 042307 411 GVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQ 490 (1314)
Q Consensus 411 ~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 490 (1314)
|.++.++. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. +. ++|++|++++|.+...+.
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-- 197 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLESLPA-- 197 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCSSCCC--
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCCchhh--
Confidence 99888755 78999999999999998887 6789999999998 6777887 55 899999999998852221
Q ss_pred CcccccccCcccc-cCCCCCcEEEeEecCCCCCCCcccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHH
Q 042307 491 SSSERSRASLHEL-KHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFF 569 (1314)
Q Consensus 491 ~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 569 (1314)
....+ .....|+.|++++|.+..+|..+. ...+++.++++.|.+....+..+
T Consensus 198 --------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~-------------------~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 198 --------VPVRNHHSEETEIFFRCRENRITHIPENIL-------------------SLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp --------CC--------CCEEEECCSSCCCCCCGGGG-------------------GSCTTEEEECCSSSCCHHHHHHH
T ss_pred --------HHHhhhcccccceEEecCCCcceecCHHHh-------------------cCCCCCEEEeeCCcCCCcCHHHH
Confidence 00011 112233899999998888876541 13345556666666655555555
Q ss_pred hhhc
Q 042307 570 MQLK 573 (1314)
Q Consensus 570 ~~l~ 573 (1314)
..+.
T Consensus 251 ~~l~ 254 (571)
T 3cvr_A 251 SQQT 254 (571)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 4443
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=4.9e-14 Score=145.62 Aligned_cols=150 Identities=15% Similarity=0.231 Sum_probs=128.9
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCC--ccccCCCCCCCEE
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGD--VAVIGELKQLEIL 428 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~~~~L~~L~~L 428 (1314)
.+++|+.|++++|.+. .+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++++++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 6788999999998764 666 3 588999999999999877664 78999999999999999986 5889999999999
Q ss_pred EccCccCc-ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCC
Q 042307 429 SFQGSNIE-QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLS 507 (1314)
Q Consensus 429 ~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 507 (1314)
++++|.++ ..|..++.+++|++|++++|..++.++. +.++++|++|++++|.+. . +..+..++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~------------~--~~~l~~l~ 181 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH------------D--YRGIEDFP 181 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC------------C--CTTGGGCS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc------------C--hHHhccCC
Confidence 99999998 4688899999999999999855888874 899999999999999885 1 23678899
Q ss_pred CCcEEEeEecCCC
Q 042307 508 SLNTLEIQVRDPK 520 (1314)
Q Consensus 508 ~L~~L~l~~~~~~ 520 (1314)
+|+.|++++|.+.
T Consensus 182 ~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 182 KLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEEECBC---
T ss_pred CCCEEEeeCcccC
Confidence 9999999998864
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=4.6e-15 Score=168.97 Aligned_cols=175 Identities=15% Similarity=0.229 Sum_probs=119.5
Q ss_pred CCccEEEcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCC-CCCcccccCccCcEEEc
Q 042307 331 KNCTAISLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLL-SLPSSLHLLVNLRTLCL 408 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~-~lp~~~~~l~~L~~L~L 408 (1314)
..++.+++++|.+...+..+ .+++|++|++++|.+.......++.++++|++|++++|.+. ..|..+.++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 46777888888775554433 77888888888776443312234577888888888888776 44667777888888888
Q ss_pred CCC-cCCC--c-cccCCCCCCCEEEccCc-cCcc--cchhhcCCC-CCCEEeeccCC-CC--CccchhhhcCCCCCcEEE
Q 042307 409 DNG-VLGD--V-AVIGELKQLEILSFQGS-NIEQ--LPREIGQLT-RLRSLNLSSCY-QL--KAISSNVISNLSQLEELY 477 (1314)
Q Consensus 409 ~~~-~~~~--~-~~~~~L~~L~~L~L~~~-~i~~--lp~~i~~L~-~L~~L~L~~~~-~l--~~~~~~~l~~l~~L~~L~ 477 (1314)
++| .++. + ..++++++|++|++++| .++. +|..++.++ +|++|++++|. .+ ..++.. +.++++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEe
Confidence 887 4553 3 44677788888888888 7773 566677787 88888888773 23 233433 66778888888
Q ss_pred cCCCc-cccccccCCcccccccCcccccCCCCCcEEEeEecC
Q 042307 478 LGDTF-IQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRD 518 (1314)
Q Consensus 478 l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 518 (1314)
+++|. +. ...+..+..+++|++|+++++.
T Consensus 229 l~~~~~l~------------~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLK------------NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCC------------GGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCcCC------------HHHHHHHhCCCCCCEeeCCCCC
Confidence 88776 43 3344566677777777777664
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=5e-14 Score=157.59 Aligned_cols=177 Identities=15% Similarity=0.115 Sum_probs=140.0
Q ss_pred CCccEEEcccCCCcc-cCCC---cCCCCccEEEeCCCCCCcccC---chhhhCCCcccEEEecCCcCCCC-CcccccCcc
Q 042307 331 KNCTAISLHNCKIGE-LVDG---LECPRLKFFHISPREGFIKIP---DNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVN 402 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~-l~~~---~~~~~L~~L~l~~~~~~~~~~---~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~ 402 (1314)
.++++|++++|.+.. .|.. ..+++|++|++++|.+....+ ...+..+++|++|++++|.+..+ |..|+++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 458999999999864 4444 468899999999998765544 22335799999999999999977 467999999
Q ss_pred CcEEEcCCCcCCC---c---cccCCCCCCCEEEccCccCcccchh----hcCCCCCCEEeeccCCCCCcc-chhhhcCC-
Q 042307 403 LRTLCLDNGVLGD---V---AVIGELKQLEILSFQGSNIEQLPRE----IGQLTRLRSLNLSSCYQLKAI-SSNVISNL- 470 (1314)
Q Consensus 403 L~~L~L~~~~~~~---~---~~~~~L~~L~~L~L~~~~i~~lp~~----i~~L~~L~~L~L~~~~~l~~~-~~~~l~~l- 470 (1314)
|++|++++|.+.. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++| .+..+ |.. +..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh-HHhcc
Confidence 9999999998653 2 3357899999999999999877653 578899999999998 56665 554 6666
Q ss_pred --CCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 471 --SQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 471 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
++|++|++++|.+.. .+..+. ++|+.|++++|.++.+|.
T Consensus 249 ~~~~L~~L~Ls~N~l~~-------------lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQ-------------VPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCTTCCCEECCSSCCCS-------------CCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred CcCcCCEEECCCCCCCc-------------hhhhhc--CCCCEEECCCCcCCCCch
Confidence 699999999998852 233332 799999999999887654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.4e-14 Score=175.26 Aligned_cols=172 Identities=22% Similarity=0.274 Sum_probs=143.4
Q ss_pred CCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcC
Q 042307 330 LKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLD 409 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~ 409 (1314)
+..+..+.+..+.+..+.....+++|+.|++++|.+ ..++. |..+++|+.|+|++|.+..+|. +.++++|++|+|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCC-CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCC-CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 334455566666666666555888999999998875 44553 5889999999999999999876 9999999999999
Q ss_pred CCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcccccccc
Q 042307 410 NGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEG 489 (1314)
Q Consensus 410 ~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (1314)
+|.+..++.++.+++|++|+|++|.+..+| .+..|++|++|+|++| .+..++. ++.+++|++|+|++|.+.
T Consensus 96 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~----- 166 (605)
T 1m9s_A 96 ENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS----- 166 (605)
T ss_dssp SSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCC-----
T ss_pred CCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCC-----
Confidence 999999989999999999999999999875 5899999999999998 6777743 899999999999999885
Q ss_pred CCcccccccCcccccCCCCCcEEEeEecCCCCCC
Q 042307 490 QSSSERSRASLHELKHLSSLNTLEIQVRDPKVLP 523 (1314)
Q Consensus 490 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 523 (1314)
... . +..+++|+.|++++|.+..++
T Consensus 167 -------~~~-~-l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 167 -------DIV-P-LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp -------CCG-G-GTTCTTCCEEECCSSCCCBCG
T ss_pred -------Cch-h-hccCCCCCEEECcCCCCCCCh
Confidence 212 2 888999999999998876553
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=6.3e-14 Score=160.30 Aligned_cols=171 Identities=21% Similarity=0.281 Sum_probs=138.0
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhh-CCCcccEEEecCCcCCCCC-cccccCccCcEEEcCCC
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFT-RLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~-~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~~~ 411 (1314)
+.++++++.+..+|..+ .+.++.|++++|.+ ..++...|. ++.+|++|+|++|.+..++ ..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 68899999999998765 34689999999975 456666666 8999999999999999885 56999999999999999
Q ss_pred cCCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccCCCCCccchhhh---cCCCCCcEEEcCCCcccc
Q 042307 412 VLGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSCYQLKAISSNVI---SNLSQLEELYLGDTFIQW 485 (1314)
Q Consensus 412 ~~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~~~ 485 (1314)
.+..+ ..|+++.+|++|+|++|.++.+ |..+..+++|++|+|++| .+..+|...+ ..+++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 98876 5688999999999999999976 677899999999999997 7888888755 578999999999998862
Q ss_pred ccccCCcccccccCcccccCCCC--CcEEEeEecCC
Q 042307 486 ETEGQSSSERSRASLHELKHLSS--LNTLEIQVRDP 519 (1314)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 519 (1314)
.....+..++. |+.|++++|.+
T Consensus 178 ------------l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 ------------LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ------------CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ------------cCHHHhhhccHhhcceEEecCCCc
Confidence 22234555555 46788887764
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=1.1e-14 Score=169.10 Aligned_cols=234 Identities=19% Similarity=0.189 Sum_probs=147.7
Q ss_pred CCCccEEEcccCCCccc-----CCCc-CCCCccEEEeCCCC---CCcccCchh------hhCCCcccEEEecCCcCCC--
Q 042307 330 LKNCTAISLHNCKIGEL-----VDGL-ECPRLKFFHISPRE---GFIKIPDNF------FTRLTELRVLDFTDMHLLS-- 392 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l-----~~~~-~~~~L~~L~l~~~~---~~~~~~~~~------f~~l~~L~~L~Ls~n~~~~-- 392 (1314)
.+++++|++++|.+... +..+ .+++|++|++++|. +...+|..+ |..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 45678888888877542 2223 67788888888753 223444443 4677888888888888775
Q ss_pred ---CCcccccCccCcEEEcCCCcCCCc------cccCCC---------CCCCEEEccCccCc--ccc---hhhcCCCCCC
Q 042307 393 ---LPSSLHLLVNLRTLCLDNGVLGDV------AVIGEL---------KQLEILSFQGSNIE--QLP---REIGQLTRLR 449 (1314)
Q Consensus 393 ---lp~~~~~l~~L~~L~L~~~~~~~~------~~~~~L---------~~L~~L~L~~~~i~--~lp---~~i~~L~~L~ 449 (1314)
+|..+.++++|++|++++|.+... ..+..+ ++|++|++++|.++ .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 567778888888888888877532 223333 78888888888775 444 4567788888
Q ss_pred EEeeccCCCCCc-----cchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCC
Q 042307 450 SLNLSSCYQLKA-----ISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPK 524 (1314)
Q Consensus 450 ~L~L~~~~~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 524 (1314)
+|++++| .++. +.+..+.++++|++|++++|.+... .....+..+..+++|+.|++++|.+.....
T Consensus 191 ~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~--------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 191 TVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL--------GSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp EEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH--------HHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred EEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH--------HHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 8888887 4541 2221267778888888888776310 012234456777788888887766532100
Q ss_pred cccccccceeEEEEccccCCCCCCccceEEEeecCCccchhhHHHh--hhcccceeecccccCchh----hccccccCCC
Q 042307 525 GFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLNASICLKDEFFM--QLKGLEELWLDEVQGVEN----VVYELDREGF 598 (1314)
Q Consensus 525 ~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~----~~~~~~~~~~ 598 (1314)
. ..+..+. .+++|+.|+++++..... ++..+. ..+
T Consensus 262 ~--------------------------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-~~l 302 (386)
T 2ca6_A 262 A--------------------------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-EKM 302 (386)
T ss_dssp H--------------------------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-HHC
T ss_pred H--------------------------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-hcC
Confidence 0 0112222 267788888887765442 322221 246
Q ss_pred CCCceEEeecCCC
Q 042307 599 PSLKHLHIQNNPY 611 (1314)
Q Consensus 599 ~~L~~L~l~~~~~ 611 (1314)
++|++|++++|..
T Consensus 303 ~~L~~L~l~~N~l 315 (386)
T 2ca6_A 303 PDLLFLELNGNRF 315 (386)
T ss_dssp TTCCEEECTTSBS
T ss_pred CCceEEEccCCcC
Confidence 8888888888864
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=1.6e-13 Score=148.62 Aligned_cols=149 Identities=23% Similarity=0.281 Sum_probs=131.9
Q ss_pred cccCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEE
Q 042307 327 RDTLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTL 406 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L 406 (1314)
-..+++++.|++++|.+..++....+++|+.|++++|.+. .++. |.++++|++|++++|.+..+|.... .+|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 3457889999999999999985559999999999999854 4554 6999999999999999999876444 999999
Q ss_pred EcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 407 CLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 407 ~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
++++|.++.++.++++++|++|++++|.++.+| .++.+++|++|++++| .+..++ .+..+++|++|++++|.+.
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~--~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTG--GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCT--TSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchH--HhccCCCCCEEeCCCCccc
Confidence 999999999988999999999999999999987 6999999999999998 677773 3899999999999999875
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=1.1e-13 Score=144.68 Aligned_cols=149 Identities=21% Similarity=0.284 Sum_probs=128.7
Q ss_pred cccCCCccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcc-cccCccC
Q 042307 327 RDTLKNCTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSS-LHLLVNL 403 (1314)
Q Consensus 327 ~~~~~~l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~-~~~l~~L 403 (1314)
....+++++|++++|.+..++... .+++|++|++++|.+ ..++...|.++++|++|++++|.+..+|.. |.++++|
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 345678999999999999888754 899999999999975 467777789999999999999999988654 7899999
Q ss_pred cEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCC
Q 042307 404 RTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGD 480 (1314)
Q Consensus 404 ~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~ 480 (1314)
++|++++|.++.+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++|.. .+.+++|++|++..
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHHH
Confidence 9999999999876 4589999999999999999988765 78999999999999832 34567788888888
Q ss_pred Cccc
Q 042307 481 TFIQ 484 (1314)
Q Consensus 481 ~~~~ 484 (1314)
|.+.
T Consensus 175 n~~~ 178 (208)
T 2o6s_A 175 NKHS 178 (208)
T ss_dssp HHCT
T ss_pred HhCC
Confidence 7775
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=3.1e-13 Score=141.91 Aligned_cols=148 Identities=18% Similarity=0.319 Sum_probs=126.9
Q ss_pred cEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccC
Q 042307 356 KFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQG 432 (1314)
Q Consensus 356 ~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~ 432 (1314)
+.++++++. ...+|..+ ..+|+.|++++|.+..+|. .|.++++|++|+|++|.+..+ ..|+++++|++|+|++
T Consensus 14 ~~v~c~~~~-l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSC-CSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCC-cCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 577888776 45678765 3689999999999998855 799999999999999999876 7899999999999999
Q ss_pred ccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcE
Q 042307 433 SNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNT 511 (1314)
Q Consensus 433 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 511 (1314)
|.++.+|.. +..+++|++|+|++| .+..+++..+..+++|++|++++|.+. ......+..+++|+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQ------------TIAKGTFSPLRAIQT 156 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS------------CCCTTTTTTCTTCCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCC------------EECHHHHhCCCCCCE
Confidence 999999876 588999999999998 788887777999999999999999986 333346788999999
Q ss_pred EEeEecCCC
Q 042307 512 LEIQVRDPK 520 (1314)
Q Consensus 512 L~l~~~~~~ 520 (1314)
|++++|.+.
T Consensus 157 L~L~~N~~~ 165 (220)
T 2v9t_B 157 MHLAQNPFI 165 (220)
T ss_dssp EECCSSCEE
T ss_pred EEeCCCCcC
Confidence 999988753
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=1.8e-13 Score=156.43 Aligned_cols=155 Identities=24% Similarity=0.305 Sum_probs=135.5
Q ss_pred ccCCCccEEEcccCCCcccCCCc---CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccC
Q 042307 328 DTLKNCTAISLHNCKIGELVDGL---ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNL 403 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L 403 (1314)
.....++.|++++|.+..++... .+++|+.|++++|.+ ..++...|.++++|++|+|++|.+..+|. .|.++++|
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 46677999999999999988754 789999999999985 45666667999999999999999998855 68999999
Q ss_pred cEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchhh----cCCCCCCEEeeccCCCCCccchhhhcCCCC--CcE
Q 042307 404 RTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPREI----GQLTRLRSLNLSSCYQLKAISSNVISNLSQ--LEE 475 (1314)
Q Consensus 404 ~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~i----~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~--L~~ 475 (1314)
++|+|++|.+..+ ..|+++++|++|+|++|.++.+|..+ ..+++|++|+|++| .+..+|...+..+.. |+.
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTT
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcce
Confidence 9999999999875 67999999999999999999998875 67999999999998 788999877888887 489
Q ss_pred EEcCCCccc
Q 042307 476 LYLGDTFIQ 484 (1314)
Q Consensus 476 L~l~~~~~~ 484 (1314)
|++++|.+.
T Consensus 194 l~l~~N~~~ 202 (361)
T 2xot_A 194 LYLHNNPLE 202 (361)
T ss_dssp EECCSSCEE
T ss_pred EEecCCCcc
Confidence 999999774
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=3.6e-14 Score=162.61 Aligned_cols=153 Identities=14% Similarity=0.243 Sum_probs=76.2
Q ss_pred CCCccEEEcccCCCcccCC-----Cc-CCC-CccEEEeCCCCCCcccCchhhhCC-----CcccEEEecCCcCCCCC-cc
Q 042307 330 LKNCTAISLHNCKIGELVD-----GL-ECP-RLKFFHISPREGFIKIPDNFFTRL-----TELRVLDFTDMHLLSLP-SS 396 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~f~~l-----~~L~~L~Ls~n~~~~lp-~~ 396 (1314)
.+++++|++++|.+...+. .+ .++ +|++|++++|.+....+.. |..+ ++|++|+|++|.+...+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3346666666666655542 12 455 5666666666543322222 2332 56666666666655432 22
Q ss_pred ----cccC-ccCcEEEcCCCcCCCc--c----ccCC-CCCCCEEEccCccCc-----ccchhhcCCC-CCCEEeeccCCC
Q 042307 397 ----LHLL-VNLRTLCLDNGVLGDV--A----VIGE-LKQLEILSFQGSNIE-----QLPREIGQLT-RLRSLNLSSCYQ 458 (1314)
Q Consensus 397 ----~~~l-~~L~~L~L~~~~~~~~--~----~~~~-L~~L~~L~L~~~~i~-----~lp~~i~~L~-~L~~L~L~~~~~ 458 (1314)
+..+ ++|++|++++|.++.. . .+.. .++|++|++++|.++ .++..+..+. +|++|++++| .
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-N 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-C
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-C
Confidence 3333 5666666666665432 1 1333 246666666666555 3334444444 6666666665 4
Q ss_pred CCccchhh----hcCC-CCCcEEEcCCCccc
Q 042307 459 LKAISSNV----ISNL-SQLEELYLGDTFIQ 484 (1314)
Q Consensus 459 l~~~~~~~----l~~l-~~L~~L~l~~~~~~ 484 (1314)
++...... +... ++|++|++++|.+.
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 44433321 2233 36666666666553
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=4e-13 Score=141.08 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=127.0
Q ss_pred ccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC--cccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEc
Q 042307 355 LKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP--SSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSF 430 (1314)
Q Consensus 355 L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp--~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L 430 (1314)
-+++++++|.+ ..+|..+ ...+++|+|++|.++.++ ..|.++++|++|++++|.++.+ ..|+++++|++|+|
T Consensus 13 ~~~l~~s~n~l-~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKL-NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCc-ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 36889998874 5678765 346789999999999873 3489999999999999999876 47999999999999
Q ss_pred cCccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCC
Q 042307 431 QGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSL 509 (1314)
Q Consensus 431 ~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 509 (1314)
++|.++.+|. .++.+++|++|++++| .+..+++..+.++++|++|++++|.+. ...+..+..+++|
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L 155 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT------------TVAPGAFDTLHSL 155 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC------------CBCTTTTTTCTTC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC------------EECHHHhcCCCCC
Confidence 9999998865 4899999999999998 678886666999999999999999986 4445678899999
Q ss_pred cEEEeEecCCC
Q 042307 510 NTLEIQVRDPK 520 (1314)
Q Consensus 510 ~~L~l~~~~~~ 520 (1314)
+.|++++|.+.
T Consensus 156 ~~L~L~~N~l~ 166 (220)
T 2v70_A 156 STLNLLANPFN 166 (220)
T ss_dssp CEEECCSCCEE
T ss_pred CEEEecCcCCc
Confidence 99999988754
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=6.5e-13 Score=158.53 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=137.2
Q ss_pred cCCCccEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEc
Q 042307 329 TLKNCTAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCL 408 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L 408 (1314)
..++++.|++++|.+..+| ..+++|++|++++|.+.. +|. + .+ +|++|++++|.++.+|. .+++|++|++
T Consensus 78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINA 147 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeC
Confidence 4578999999999999999 467999999999998654 777 3 44 99999999999999988 6899999999
Q ss_pred CCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCC-------cEEEcCCC
Q 042307 409 DNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQL-------EELYLGDT 481 (1314)
Q Consensus 409 ~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L-------~~L~l~~~ 481 (1314)
++|.++.++. .+++|++|++++|.++.+|. ++ ++|++|+|++| .++.+|. +.. +| ++|++++|
T Consensus 148 s~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 148 DNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC--CC----------CCEEEECCSS
T ss_pred CCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEecCCC
Confidence 9999988755 68999999999999999998 76 99999999998 7888887 444 67 99999999
Q ss_pred ccccccccCCcccccccCcccccCCCCCcEEEeEecCCCC
Q 042307 482 FIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKV 521 (1314)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 521 (1314)
.+. ..+..+..+++|+.|++++|.+..
T Consensus 218 ~l~-------------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 218 RIT-------------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCC-------------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred cce-------------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 884 355667779999999999998754
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3.7e-13 Score=135.09 Aligned_cols=139 Identities=25% Similarity=0.212 Sum_probs=103.6
Q ss_pred CCcccEEEecCCcCC--CCCcccccCccCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcc-cchhhcCCCCCCEEee
Q 042307 377 LTELRVLDFTDMHLL--SLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQ-LPREIGQLTRLRSLNL 453 (1314)
Q Consensus 377 l~~L~~L~Ls~n~~~--~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L 453 (1314)
.++|++|++++|.+. .+|..+.++++|++|++++|.+..+..++.+++|++|++++|.++. +|..++.+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 467888888888877 7777778888888888888887777778888888888888888876 6777777888888888
Q ss_pred ccCCCCCccch-hhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecCCCCCCCc
Q 042307 454 SSCYQLKAISS-NVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 454 ~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 525 (1314)
++| .+..++. ..+..+++|++|++++|.+...+. .....+..+++|+.|+++.+....+|..
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~---------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND---------YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT---------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH---------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 887 6777653 337788888888888887741110 0013577788888888888887776653
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=2e-14 Score=166.74 Aligned_cols=245 Identities=19% Similarity=0.180 Sum_probs=157.2
Q ss_pred CcccCCCc-CCCCccEEEeCCCCCCcccCch---hhhCCCcccEEEecCCcCCC----CCccc-------ccCccCcEEE
Q 042307 343 IGELVDGL-ECPRLKFFHISPREGFIKIPDN---FFTRLTELRVLDFTDMHLLS----LPSSL-------HLLVNLRTLC 407 (1314)
Q Consensus 343 l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~---~f~~l~~L~~L~Ls~n~~~~----lp~~~-------~~l~~L~~L~ 407 (1314)
+..++..+ .+++|++|++++|.+....+.. .|.++++|++|+|++|.+.. +|..+ .++++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34444444 6778888888888654433222 24678888888888876553 34433 6778888888
Q ss_pred cCCCcCCC-----c-cccCCCCCCCEEEccCccCcc-----cchhhcCC---------CCCCEEeeccCCCCC--ccch-
Q 042307 408 LDNGVLGD-----V-AVIGELKQLEILSFQGSNIEQ-----LPREIGQL---------TRLRSLNLSSCYQLK--AISS- 464 (1314)
Q Consensus 408 L~~~~~~~-----~-~~~~~L~~L~~L~L~~~~i~~-----lp~~i~~L---------~~L~~L~L~~~~~l~--~~~~- 464 (1314)
|++|.+.. + ..++++++|++|+|++|.++. ++..+..+ ++|++|++++| .++ .++.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHH
Confidence 88888765 2 467788888888888888762 33334444 78888888887 444 3332
Q ss_pred -hhhcCCCCCcEEEcCCCccccccccCCcccccccCcc-cccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEcccc
Q 042307 465 -NVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLH-ELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGDEW 542 (1314)
Q Consensus 465 -~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 542 (1314)
..+..+++|++|++++|.+.... ...... .+..+++|+.|++++|.+....
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g--------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g------------------- 232 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEG--------IEHLLLEGLAYCQELKVLDLQDNTFTHLG------------------- 232 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHH--------HHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------
T ss_pred HHHHHhCCCcCEEECcCCCCCHhH--------HHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------
Confidence 23667788888888888764100 001122 6677788888888776642100
Q ss_pred CCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchh----hccccccCCCCCCceEEeecCCCce----E
Q 042307 543 NWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVEN----VVYELDREGFPSLKHLHIQNNPYLL----C 614 (1314)
Q Consensus 543 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~----~ 614 (1314)
....+..+..+++|++|+++++..... +...+....+++|++|++++|.... .
T Consensus 233 -------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 233 -------------------SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp -------------------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred -------------------HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 011224556778999999998875443 2222322348999999999998543 1
Q ss_pred eccCCCCCCC-CcCCccceecccCcc
Q 042307 615 INDSTELVPL-DAFPLLESLSLSNLM 639 (1314)
Q Consensus 615 i~~~~~~~~~-~~~~~L~~L~l~~~~ 639 (1314)
++. .. ..+++|++|+++++.
T Consensus 294 l~~-----~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 294 LKT-----VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHH-----HHHHHCTTCCEEECTTSB
T ss_pred HHH-----HHHhcCCCceEEEccCCc
Confidence 211 11 347999999999864
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=8.2e-13 Score=139.82 Aligned_cols=149 Identities=22% Similarity=0.349 Sum_probs=127.8
Q ss_pred ccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEcc
Q 042307 355 LKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQ 431 (1314)
Q Consensus 355 L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~ 431 (1314)
.+.++.+++. ...+|..+ ..+|++|+|++|.+..+ |..|.++++|++|++++|.+..+ ..++++++|++|+|+
T Consensus 21 ~~~v~c~~~~-l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCC-cCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 5678887765 46788765 48999999999999988 77799999999999999999876 558999999999999
Q ss_pred CccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCc
Q 042307 432 GSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLN 510 (1314)
Q Consensus 432 ~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 510 (1314)
+|.++.+|.. ++.+++|++|++++| .+..+|.. +.++++|++|++++|.+. ......+..+++|+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLK------------SIPHGAFDRLSSLT 162 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCC------------CCCTTTTTTCTTCC
T ss_pred CCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCC------------ccCHHHHhCCCCCC
Confidence 9999988765 689999999999998 78899987 899999999999999886 22234678899999
Q ss_pred EEEeEecCCCC
Q 042307 511 TLEIQVRDPKV 521 (1314)
Q Consensus 511 ~L~l~~~~~~~ 521 (1314)
.|++++|.+..
T Consensus 163 ~L~l~~N~~~c 173 (229)
T 3e6j_A 163 HAYLFGNPWDC 173 (229)
T ss_dssp EEECTTSCBCT
T ss_pred EEEeeCCCccC
Confidence 99999887653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=2.1e-15 Score=181.49 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=143.7
Q ss_pred ccCCCccEEEcccCCCcccCCCc-CCCCccEEEeCCCC-------------CCcccCchhhhCCCcccEEE-ecCCcCCC
Q 042307 328 DTLKNCTAISLHNCKIGELVDGL-ECPRLKFFHISPRE-------------GFIKIPDNFFTRLTELRVLD-FTDMHLLS 392 (1314)
Q Consensus 328 ~~~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~f~~l~~L~~L~-Ls~n~~~~ 392 (1314)
...+.++.|++++|.+..+|..+ .+++|+.|++++|. ... .++..++.+.+|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~-~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG-GHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccccc-CCHHHHHHHHhcccCcchhhcccch
Confidence 34677888999999999999888 88899999987653 222 3334558888888888 56554433
Q ss_pred CCc------ccccC--ccCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccch
Q 042307 393 LPS------SLHLL--VNLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISS 464 (1314)
Q Consensus 393 lp~------~~~~l--~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~ 464 (1314)
++. .+..+ ..|++|++++|.++.++.++++++|++|+|++|.++.+|..++.+++|++|+|++| .++.+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp- 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-
Confidence 322 11111 25899999999998886799999999999999999999999999999999999997 778888
Q ss_pred hhhcCCCCCcEEEcCCCccccccccCCcccccccC-cccccCCCCCcEEEeEecCCCCCCCc
Q 042307 465 NVISNLSQLEELYLGDTFIQWETEGQSSSERSRAS-LHELKHLSSLNTLEIQVRDPKVLPKG 525 (1314)
Q Consensus 465 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 525 (1314)
. ++++++|++|++++|.+. +.. +..+..+++|+.|++++|.+...|..
T Consensus 503 ~-l~~l~~L~~L~Ls~N~l~------------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 503 G-VANLPRLQELLLCNNRLQ------------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp G-GTTCSSCCEEECCSSCCC------------SSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred c-cCCCCCCcEEECCCCCCC------------CCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 4 899999999999999885 333 67888999999999999988776653
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=3.2e-13 Score=154.72 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=6.6
Q ss_pred CCCceEEeecCC
Q 042307 599 PSLKHLHIQNNP 610 (1314)
Q Consensus 599 ~~L~~L~l~~~~ 610 (1314)
++|++|++++|.
T Consensus 225 ~~L~~L~Ls~N~ 236 (362)
T 3goz_A 225 NHVVSLNLCLNC 236 (362)
T ss_dssp TTCCEEECCSSC
T ss_pred CCceEEECcCCC
Confidence 355566665554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=1e-12 Score=131.90 Aligned_cols=131 Identities=19% Similarity=0.256 Sum_probs=89.7
Q ss_pred CCCccEEEcccCCCc--ccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCC-CCcccccCccCcE
Q 042307 330 LKNCTAISLHNCKIG--ELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLS-LPSSLHLLVNLRT 405 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~-lp~~~~~l~~L~~ 405 (1314)
.+++++|++++|.+. .+|..+ .+++|++|++++|.+.. + ..|..+++|++|++++|.+.. +|..+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 466778888888776 777664 67777777777776433 2 335677777777777777776 5666666777777
Q ss_pred EEcCCCcCCCc---cccCCCCCCCEEEccCccCcccch----hhcCCCCCCEEeeccCCCCCccch
Q 042307 406 LCLDNGVLGDV---AVIGELKQLEILSFQGSNIEQLPR----EIGQLTRLRSLNLSSCYQLKAISS 464 (1314)
Q Consensus 406 L~L~~~~~~~~---~~~~~L~~L~~L~L~~~~i~~lp~----~i~~L~~L~~L~L~~~~~l~~~~~ 464 (1314)
|++++|.++.+ ..++.+++|++|++++|.++.+|. .+..+++|++|++++| ...++|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 77777776653 456677777777777777776665 5667777777777776 4445543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.1e-12 Score=128.43 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=61.8
Q ss_pred CcccEEEecCCcCC--CCCcccccCccCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcc-cchhhcCCCCCCEEeec
Q 042307 378 TELRVLDFTDMHLL--SLPSSLHLLVNLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQ-LPREIGQLTRLRSLNLS 454 (1314)
Q Consensus 378 ~~L~~L~Ls~n~~~--~lp~~~~~l~~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~ 454 (1314)
++|+.|++++|.+. .+|..+..+++|++|++++|.+..+..++++++|++|++++|.++. +|..++.+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 45566666666655 5555556666666666666665555555666666666666666654 55555556666666666
Q ss_pred cCCCCCccch-hhhcCCCCCcEEEcCCCccc
Q 042307 455 SCYQLKAISS-NVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 455 ~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+| .++.++. ..++.+++|++|++++|.+.
T Consensus 97 ~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 97 GN-KIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TS-CCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CC-cCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 65 4554431 22556666666666666553
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=2.7e-12 Score=125.68 Aligned_cols=121 Identities=19% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCccEEEcccCCCc--ccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCC-CCcccccCccCcEE
Q 042307 331 KNCTAISLHNCKIG--ELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLS-LPSSLHLLVNLRTL 406 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~-lp~~~~~l~~L~~L 406 (1314)
++++.+++++|.+. .+|..+ .+++|++|++++|.+... ..|..+++|++|++++|.+.. +|..+.++++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45667777777665 555544 556666666666653322 224556666666666666655 45555556666666
Q ss_pred EcCCCcCCCc---cccCCCCCCCEEEccCccCcccch----hhcCCCCCCEEeec
Q 042307 407 CLDNGVLGDV---AVIGELKQLEILSFQGSNIEQLPR----EIGQLTRLRSLNLS 454 (1314)
Q Consensus 407 ~L~~~~~~~~---~~~~~L~~L~~L~L~~~~i~~lp~----~i~~L~~L~~L~L~ 454 (1314)
++++|.++.+ ..++.+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666655542 445555556666665555555543 35555555555543
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=8.5e-12 Score=127.61 Aligned_cols=106 Identities=19% Similarity=0.302 Sum_probs=76.0
Q ss_pred CcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccch-hhcCCCCCCEEeec
Q 042307 378 TELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLS 454 (1314)
Q Consensus 378 ~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~ 454 (1314)
.+|++|++++|.++.+|..|.++++|++|++++|.++.+ ..|+++++|++|+|++|.++.+|. .++.+++|++|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 356677777777777776677777777777777776655 457777777777777777776643 57777778888887
Q ss_pred cCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 455 SCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 455 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+| .+..+|...+..+++|++|++++|.+.
T Consensus 111 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 76 667777766777778888888777653
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=3.4e-12 Score=128.95 Aligned_cols=134 Identities=15% Similarity=0.218 Sum_probs=83.5
Q ss_pred hhCCCcccEEEecCCcCCCCCcccccCc-cCcEEEcCCCcCCCccccCCCCCCCEEEccCccCcccchhh-cCCCCCCEE
Q 042307 374 FTRLTELRVLDFTDMHLLSLPSSLHLLV-NLRTLCLDNGVLGDVAVIGELKQLEILSFQGSNIEQLPREI-GQLTRLRSL 451 (1314)
Q Consensus 374 f~~l~~L~~L~Ls~n~~~~lp~~~~~l~-~L~~L~L~~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L 451 (1314)
|..+.+|++|++++|.+..+|. +..+. +|++|++++|.++.+..++++++|++|++++|.++.+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3456666667777766666643 33333 67777777777666666677777777777777777666544 677777777
Q ss_pred eeccCCCCCccch-hhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCCCCcEEEeEecC
Q 042307 452 NLSSCYQLKAISS-NVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLSSLNTLEIQVRD 518 (1314)
Q Consensus 452 ~L~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 518 (1314)
++++| .++.+|. ..++.+++|++|++++|.+...+. .....+..+++|+.|+++.+.
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~---------~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKH---------YRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT---------HHHHHHHHCTTCSEETTEECC
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHh---------HHHHHHHHCCccceeCCCcCC
Confidence 77776 5566664 236667777777777776631110 001125566777777776655
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=8.5e-12 Score=127.79 Aligned_cols=122 Identities=21% Similarity=0.291 Sum_probs=59.1
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~ 412 (1314)
+.++++++.+..+|..+. .++++|++++|.+....+..+|.++++|++|+|++|.++.+ |..|.++++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 466666666666665431 25555555555432222222345555555555555555544 4445555555555555554
Q ss_pred CCCc--cccCCCCCCCEEEccCccCccc-chhhcCCCCCCEEeeccC
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQL-PREIGQLTRLRSLNLSSC 456 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~ 456 (1314)
++.+ ..++++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 4433 2244444444444444444422 333444444444444443
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=9.3e-12 Score=127.50 Aligned_cols=123 Identities=20% Similarity=0.233 Sum_probs=73.2
Q ss_pred cEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcc--cccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEcc
Q 042307 356 KFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSS--LHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQ 431 (1314)
Q Consensus 356 ~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~--~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~ 431 (1314)
++++++++.+ ..+|..++ .+|++|++++|.+..+|.. |.++++|++|++++|.++.+ ..|+++++|++|+|+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 5666666653 45565442 2666666666666666442 66666666666666666554 456666666666666
Q ss_pred CccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcc
Q 042307 432 GSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 432 ~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
+|.++.+|. .++.+++|++|++++| .+..+++..++.+++|++|++++|.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 666665533 3566666666666665 44444433356666666666666654
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.2e-11 Score=124.59 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=107.8
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~~~~ 412 (1314)
+.++++++.+..+|..+ .++|++|++++|.+ ..+|. .|.++++|++|+|++|.++.++ ..|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i-~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF-TLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC-CSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC-chhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57999999999999875 36899999999986 47774 5699999999999999999885 569999999999999999
Q ss_pred CCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCC
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCY 457 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 457 (1314)
++.+ ..|+++++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9876 5699999999999999999998874 8899999999999973
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=5.1e-12 Score=157.41 Aligned_cols=150 Identities=18% Similarity=0.273 Sum_probs=98.6
Q ss_pred CCccEEEcccCCCcccCCCc-CCCCccEEEeC-----CCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCc
Q 042307 331 KNCTAISLHNCKIGELVDGL-ECPRLKFFHIS-----PREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLR 404 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~ 404 (1314)
..++.+++.+|.+...+... ....|+.+.+. .|.. .++.+.|..+.+|++|+|++|.+..+|..+.++++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 45788888888887766543 33334443332 2322 2556667899999999999999999998888999999
Q ss_pred EEEcCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCcc
Q 042307 405 TLCLDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 405 ~L~L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (1314)
+|+|++|.++.+ ..|++|++|++|+|++|.|+.+|..|+.|++|++|+|++| .++.+|.. ++++++|++|+|++|.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCcc
Confidence 999999998876 6789999999999999999999999999999999999998 78899887 89999999999999988
Q ss_pred c
Q 042307 484 Q 484 (1314)
Q Consensus 484 ~ 484 (1314)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 6
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=1e-11 Score=125.39 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=64.7
Q ss_pred CCCccEEEcccCCCcccCCCcCCC-CccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcc-cccCccCcEEE
Q 042307 330 LKNCTAISLHNCKIGELVDGLECP-RLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSS-LHLLVNLRTLC 407 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~-~~~l~~L~~L~ 407 (1314)
..+++.|++++|.+..++....+. +|++|++++|.+.. ++ .|.++++|++|++++|.+..+|.. |..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-cc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 445566666666665554433333 55566655555332 21 235555555555555555555433 25555555555
Q ss_pred cCCCcCCCcc---ccCCCCCCCEEEccCccCcccchh----hcCCCCCCEEeeccC
Q 042307 408 LDNGVLGDVA---VIGELKQLEILSFQGSNIEQLPRE----IGQLTRLRSLNLSSC 456 (1314)
Q Consensus 408 L~~~~~~~~~---~~~~L~~L~~L~L~~~~i~~lp~~----i~~L~~L~~L~L~~~ 456 (1314)
+++|.+..++ .++.+++|++|++++|.++.+|.. ++.+++|++|++++|
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 5555554431 355555555555555555555543 455555555555554
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=2.7e-12 Score=159.92 Aligned_cols=145 Identities=24% Similarity=0.272 Sum_probs=110.4
Q ss_pred EcccCCCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCC
Q 042307 337 SLHNCKIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGD 415 (1314)
Q Consensus 337 ~l~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~ 415 (1314)
++..|.+...+..+ .+++|+.|+|++|.+. .+|..+| ++++|++|+|++|.+..+|..|+++++|++|+|++|.++.
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 33334444334444 8899999999999864 7888875 8999999999999999999999999999999999999987
Q ss_pred c-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCC-CcEEEcCCCccc
Q 042307 416 V-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQ-LEELYLGDTFIQ 484 (1314)
Q Consensus 416 ~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~-L~~L~l~~~~~~ 484 (1314)
+ ..|++|++|++|+|++|.++.+|..|++|++|++|+|++| .+...++..+..+.. +..|++++|.+.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCccc
Confidence 6 7799999999999999999999999999999999999998 565554443543321 223567666654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=7.9e-11 Score=119.10 Aligned_cols=121 Identities=22% Similarity=0.382 Sum_probs=66.1
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcc-cccCccCcEEEcCCCc
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSS-LHLLVNLRTLCLDNGV 412 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~-~~~l~~L~~L~L~~~~ 412 (1314)
+.++++++.+..+|..+ .++|++|++++|.+ ..++...|.++++|++|++++|.+..+|.. |.++++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 46677777776666443 24666666666653 344544556666666666666666655432 4555555555555555
Q ss_pred CCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccC
Q 042307 413 LGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSC 456 (1314)
Q Consensus 413 ~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 456 (1314)
++.+ ..++++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 5443 2244555555555555555544443 244555555555544
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.4e-10 Score=117.26 Aligned_cols=125 Identities=22% Similarity=0.395 Sum_probs=90.3
Q ss_pred ccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEcc
Q 042307 355 LKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQ 431 (1314)
Q Consensus 355 L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~ 431 (1314)
.+.++++++.. ..+|..+ ..+|++|++++|.+..+|. .|.++++|++|++++|.++.+ ..++++++|++|+++
T Consensus 9 ~~~l~~~~~~l-~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGL-TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCC-SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCC-ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 45677776653 4566544 3678888888888887754 467788888888888887765 346778888888888
Q ss_pred CccCcccchh-hcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 432 GSNIEQLPRE-IGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 432 ~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+|.++.+|.. ++.+++|++|++++| .++.+|...+..+++|++|++++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 8888777654 577788888888876 667777765677778888888777664
No 136
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.17 E-value=2.2e-10 Score=131.07 Aligned_cols=265 Identities=12% Similarity=0.093 Sum_probs=150.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc------CHHHHHHHHHHHhCCC-----------------
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP------DIKKIQGQIADKLGLK----------------- 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~~l~~~----------------- 57 (1314)
+|.|+|++|+|||||+++++++. + ++|+++.... +...+...+.+.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 105 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT 105 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred eEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence 47899999999999999998764 1 7888876543 5666666666655420
Q ss_pred cc--ccChhHHHHHHHHHHhcCCeEEEEEeCCCCccc---------ccccCCCC-CCCCceEEEEeccccc-c------c
Q 042307 58 FY--EESESGRARKLCERLRKEKKILVILDNIWANLD---------LENVGIPF-GDRGCGVLMTARSQDV-L------S 118 (1314)
Q Consensus 58 ~~--~~~~~~~~~~~~~~l~~~~~~LlvlD~v~~~~~---------~~~~~~~~-~~~~~~ilvTtr~~~~-~------~ 118 (1314)
.. ...-......+.....+.++++||+||++.... +..+.... ...+.++|+|++.... . .
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~ 185 (350)
T 2qen_A 106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITD 185 (350)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTC
T ss_pred eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcC
Confidence 00 011111222333322222489999999987543 11111100 1146789999876532 1 1
Q ss_pred c--cc--CCCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhc-CChhHHH-HHHH
Q 042307 119 S--KM--DCQNNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARALRN-KNTFEWK-NALR 192 (1314)
Q Consensus 119 ~--~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~-~~~~~w~-~~~~ 192 (1314)
. .. .....+.+.+|+.+|+.+++....+..... ...+.+.+|++.++|+|.++..++..+.. .+...+. ++.+
T Consensus 186 ~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~ 264 (350)
T 2qen_A 186 YESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE 264 (350)
T ss_dssp TTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH
Confidence 0 01 123478999999999999998865321111 12456789999999999999998876533 2222221 1111
Q ss_pred HhcCCCCCCCCCCchhhhhheeeccccc---CchhhHHHHHhhccccccCCcCHHHHHHhhcccccccCcCCHHHHHHHH
Q 042307 193 ELTRPSSSSFSGVPAEAYKSIELSYNHL---EGEELKSTFLLCCLMDFIENPSVLYLLSYGMGLGLFKGTHTMEEARDRA 269 (1314)
Q Consensus 193 ~l~~~~~~~~~~~~~~~~~~l~~s~~~L---~~~~~~~~f~~~~~~~fp~~~~i~~l~~~w~~~~~~~~~~~~~~~~~~~ 269 (1314)
.. ...+.-.+..+ ++. .+.++..+|. . + .....+........ . + .. ....
T Consensus 265 ~~---------------~~~~~~~l~~l~~~~~~-~~~~l~~la~-g-~--~~~~~l~~~~~~~~-~-~-~~----~~~~ 317 (350)
T 2qen_A 265 VA---------------KGLIMGELEELRRRSPR-YVDILRAIAL-G-Y--NRWSLIRDYLAVKG-T-K-IP----EPRL 317 (350)
T ss_dssp HH---------------HHHHHHHHHHHHHHCHH-HHHHHHHHHT-T-C--CSHHHHHHHHHHTT-C-C-CC----HHHH
T ss_pred HH---------------HHHHHHHHHHHHhCChh-HHHHHHHHHh-C-C--CCHHHHHHHHHHHh-C-C-CC----HHHH
Confidence 10 00111111222 455 5888888877 1 2 33343333221100 0 0 11 1224
Q ss_pred HHHHHHHhhccccccCCCCceee-echhHHHHHH
Q 042307 270 LTLVDKLKNSCLLLDGPESEYFS-VHDVVRDVAI 302 (1314)
Q Consensus 270 ~~~l~~L~~~sll~~~~~~~~~~-mH~lv~~~~~ 302 (1314)
..+++.|.+.+++... .+.|. .|++++.+.+
T Consensus 318 ~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 318 YALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 4578999999999764 24555 4778888764
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=6.8e-13 Score=137.10 Aligned_cols=106 Identities=24% Similarity=0.338 Sum_probs=54.3
Q ss_pred hCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEee
Q 042307 375 TRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNL 453 (1314)
Q Consensus 375 ~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 453 (1314)
.++++|++|++++|.+..+| .+.++++|++|++++|.+..+ ..++.+++|++|++++|.++.+| .++.+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 45555555555555555554 455555555555555554443 23334455555555555555554 3555555555555
Q ss_pred ccCCCCCccch-hhhcCCCCCcEEEcCCCcc
Q 042307 454 SSCYQLKAISS-NVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 454 ~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~ 483 (1314)
++| .+..++. ..+.++++|++|++++|.+
T Consensus 123 ~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 123 SNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 554 3444433 2245555555555555544
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=1.1e-10 Score=140.56 Aligned_cols=101 Identities=24% Similarity=0.317 Sum_probs=58.2
Q ss_pred ccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc-cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCC
Q 042307 380 LRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV-AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQ 458 (1314)
Q Consensus 380 L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~-~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~ 458 (1314)
|++|+|++|.++.+|. |+++++|++|++++|.++.+ ..++++++|++|+|++|.++.+| .++.+++|++|+|++| .
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-R 519 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-C
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-C
Confidence 5556666665555554 55556666666666655543 45555666666666666665555 5566666666666655 4
Q ss_pred CCcc--chhhhcCCCCCcEEEcCCCccc
Q 042307 459 LKAI--SSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 459 l~~~--~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+..+ |.. ++++++|++|++++|.+.
T Consensus 520 l~~~~~p~~-l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 520 LQQSAAIQP-LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred CCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence 4444 333 556666666666666553
No 139
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.11 E-value=1.2e-09 Score=127.94 Aligned_cols=276 Identities=15% Similarity=0.123 Sum_probs=156.3
Q ss_pred EEE--EcCCCchHHHHHHHHHHHhhcc---cCCC-EEEEEEeccCcCHHHHHHHHHHHhCCCccc--cChhHHHHHHHHH
Q 042307 2 IGV--YGIGGVGKTMLVKEVARQARND---KLFD-EVVYADVSQTPDIKKIQGQIADKLGLKFYE--ESESGRARKLCER 73 (1314)
Q Consensus 2 i~i--~G~~G~GKTtla~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~ 73 (1314)
+.| +|++|+||||+|++++++.... ..++ .++|+++....+...++..+++.++..... .+.......+...
T Consensus 53 ~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 132 (412)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDN 132 (412)
T ss_dssp EEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHH
T ss_pred EEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 455 9999999999999999887532 1122 378999888788899999999999765432 1223334555555
Q ss_pred Hhc-CCeEEEEEeCCCCcc--------ccccc-CCC--CC--C--CCceEEEEeccccccc-------c-ccCCCccEEe
Q 042307 74 LRK-EKKILVILDNIWANL--------DLENV-GIP--FG--D--RGCGVLMTARSQDVLS-------S-KMDCQNNFLV 129 (1314)
Q Consensus 74 l~~-~~~~LlvlD~v~~~~--------~~~~~-~~~--~~--~--~~~~ilvTtr~~~~~~-------~-~~~~~~~~~l 129 (1314)
+.. +++++||+||++... .+..+ ... .. . ....+|+|||...+.. . .......+.+
T Consensus 133 l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l 212 (412)
T 1w5s_A 133 LYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHL 212 (412)
T ss_dssp HHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEEC
T ss_pred HHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeee
Confidence 542 679999999997642 12211 100 11 2 3345787887554221 0 0111223899
Q ss_pred cCCCHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHhC------CcHHHHHHHHHHH---h---cC---ChhHHHHHHHH
Q 042307 130 GALNESEAWDLFKKLVGDK-IENNDLKAVAVDIAKACG------GLPIAIVTIARAL---R---NK---NTFEWKNALRE 193 (1314)
Q Consensus 130 ~~l~~~ea~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~------g~Plai~~~~~~l---~---~~---~~~~w~~~~~~ 193 (1314)
++++.++++++|..+++.. .......+.+..|++.++ |.|..+..++... + +. +.+.+..+...
T Consensus 213 ~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 213 PAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9999999999998665210 111223567889999999 9996555443321 1 11 23334433332
Q ss_pred hcCCCCCCCCCCchhhhhheeecccccCchhhHHHHHhhccccc--cCCcCHHHHHHhhc--c---cccccCcCCHHHHH
Q 042307 194 LTRPSSSSFSGVPAEAYKSIELSYNHLEGEELKSTFLLCCLMDF--IENPSVLYLLSYGM--G---LGLFKGTHTMEEAR 266 (1314)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~f~~~~~~~f--p~~~~i~~l~~~w~--~---~~~~~~~~~~~~~~ 266 (1314)
... ...+.-.++.|++. .+.++..++.+.- ...+...++...+. + .|. .... .
T Consensus 293 ~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~ 352 (412)
T 1w5s_A 293 NEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV--KPRG----Y 352 (412)
T ss_dssp C-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC--CCCC----H
T ss_pred Hhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC--CCCC----H
Confidence 210 12345567789888 5888777775310 12233333322221 1 111 0001 1
Q ss_pred HHHHHHHHHHhhccccccCC----CCceeeechhH
Q 042307 267 DRALTLVDKLKNSCLLLDGP----ESEYFSVHDVV 297 (1314)
Q Consensus 267 ~~~~~~l~~L~~~sll~~~~----~~~~~~mH~lv 297 (1314)
..+..+++.|.+.+++.... ..+.|.+|++.
T Consensus 353 ~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 353 TQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 23445789999999986531 23456666655
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=2e-12 Score=133.61 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=118.1
Q ss_pred ccEEEcccC--CCcccCCCc-CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcC
Q 042307 333 CTAISLHNC--KIGELVDGL-ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLD 409 (1314)
Q Consensus 333 l~~l~l~~~--~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~ 409 (1314)
++...+.+. .+..+|..+ .+++|++|++++|.+. .+| .|.++++|++|++++|.+..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 445555554 456666555 8999999999999754 467 4689999999999999999999988889999999999
Q ss_pred CCcCCCccccCCCCCCCEEEccCccCcccch--hhcCCCCCCEEeeccCCCCCccc----------hhhhcCCCCCcEEE
Q 042307 410 NGVLGDVAVIGELKQLEILSFQGSNIEQLPR--EIGQLTRLRSLNLSSCYQLKAIS----------SNVISNLSQLEELY 477 (1314)
Q Consensus 410 ~~~~~~~~~~~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~~~----------~~~l~~l~~L~~L~ 477 (1314)
+|.++.++.++++++|++|++++|.++.+|. .++.+++|++|++++| .+...+ ...+..+++|++|+
T Consensus 102 ~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 102 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999988889999999999999999998765 7899999999999998 443332 22367888898886
Q ss_pred cCCCcc
Q 042307 478 LGDTFI 483 (1314)
Q Consensus 478 l~~~~~ 483 (1314)
++.+
T Consensus 181 --~~~i 184 (198)
T 1ds9_A 181 --GMPV 184 (198)
T ss_dssp --CGGG
T ss_pred --Cccc
Confidence 4544
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=4.2e-10 Score=112.67 Aligned_cols=101 Identities=25% Similarity=0.470 Sum_probs=73.5
Q ss_pred cEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccCC
Q 042307 381 RVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSCY 457 (1314)
Q Consensus 381 ~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 457 (1314)
+.+++++|.+..+|..+. ++|++|++++|.+..+ ..|+++++|++|+|++|.++.+|.. ++.+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 567777777777776554 6777777777777654 4577777788888888877777665 467788888888776
Q ss_pred CCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 458 QLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 458 ~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
.+..+|...+.++++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 677777666777777888887777664
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=4.9e-10 Score=111.83 Aligned_cols=102 Identities=25% Similarity=0.398 Sum_probs=75.3
Q ss_pred ccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccC
Q 042307 380 LRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSC 456 (1314)
Q Consensus 380 L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 456 (1314)
.+.+++++|.++.+|..+. .+|++|++++|.++.+ ..|+++++|++|+|++|.++.+|.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677777777777776653 6777777777777665 4577788888888888888777654 477888888888876
Q ss_pred CCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 457 YQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
.++.++...+.++++|++|++++|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 677777766777888888888777664
No 143
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.06 E-value=9.8e-10 Score=126.06 Aligned_cols=266 Identities=11% Similarity=0.111 Sum_probs=149.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-----cCHHHHHHHHHHHhC--------------C----C
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-----PDIKKIQGQIADKLG--------------L----K 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~--------------~----~ 57 (1314)
+|.|+|++|+|||+|+++++++... .++|+++... .+.......+.+.+. . .
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 106 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIV 106 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEE
Confidence 4789999999999999999988641 2689988753 344444444444331 0 0
Q ss_pred ccc----cC----hhHHHHHHHHHHhcC--CeEEEEEeCCCCccc-----ccc-cCCCCC-CCCceEEEEeccccccc--
Q 042307 58 FYE----ES----ESGRARKLCERLRKE--KKILVILDNIWANLD-----LEN-VGIPFG-DRGCGVLMTARSQDVLS-- 118 (1314)
Q Consensus 58 ~~~----~~----~~~~~~~~~~~l~~~--~~~LlvlD~v~~~~~-----~~~-~~~~~~-~~~~~ilvTtr~~~~~~-- 118 (1314)
.+. .. .......+.+.+.+. ++++||+||++.... +.. +..... ..+.++|+|+|......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~ 186 (357)
T 2fna_A 107 IMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDY 186 (357)
T ss_dssp ECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHH
T ss_pred ecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHH
Confidence 000 00 011234455555432 489999999976432 111 110001 13678999998754211
Q ss_pred -----c--cc--CCCccEEecCCCHHHHHHHHHHHhCC-CCCCccHHHHHHHHHHHhCCcHHHHHHHHHHHhcC-ChhHH
Q 042307 119 -----S--KM--DCQNNFLVGALNESEAWDLFKKLVGD-KIENNDLKAVAVDIAKACGGLPIAIVTIARALRNK-NTFEW 187 (1314)
Q Consensus 119 -----~--~~--~~~~~~~l~~l~~~ea~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~w 187 (1314)
. .. .....+.+.+|+.+|+.+++...++. ...... ..+|++.++|+|+++..++..+... +...|
T Consensus 187 l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~ 262 (357)
T 2fna_A 187 LRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFA 262 (357)
T ss_dssp TTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHHHHHHHHHHHccccchHHH
Confidence 0 01 11357899999999999999876521 111111 1689999999999999998776433 33333
Q ss_pred HH-HHHHhcCCCCCCCCCCchhhhhhee-ecc--cccCchhhHHHHHhhccccccCCcCHHHHHHhhc-ccccccCcCCH
Q 042307 188 KN-ALRELTRPSSSSFSGVPAEAYKSIE-LSY--NHLEGEELKSTFLLCCLMDFIENPSVLYLLSYGM-GLGLFKGTHTM 262 (1314)
Q Consensus 188 ~~-~~~~l~~~~~~~~~~~~~~~~~~l~-~s~--~~L~~~~~~~~f~~~~~~~fp~~~~i~~l~~~w~-~~~~~~~~~~~ 262 (1314)
.. +.+... ..+...+. +.+ ..+++. .+.++..+|. -+ ....+..... ..|. . ..
T Consensus 263 ~~~~~~~~~-----------~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~--g~---~~~~l~~~~~~~~g~--~-~~- 321 (357)
T 2fna_A 263 INQTLEYAK-----------KLILKEFENFLHGREIARKR-YLNIMRTLSK--CG---KWSDVKRALELEEGI--E-IS- 321 (357)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT--CB---CHHHHHHHHHHHHCS--C-CC-
T ss_pred HHHHHHHHH-----------HHHHHHHHHHhhccccccHH-HHHHHHHHHc--CC---CHHHHHHHHHHhcCC--C-CC-
Confidence 21 111100 00111111 111 156676 6888888887 23 3443332110 0010 0 01
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCCceee-echhHHHHH
Q 042307 263 EEARDRALTLVDKLKNSCLLLDGPESEYFS-VHDVVRDVA 301 (1314)
Q Consensus 263 ~~~~~~~~~~l~~L~~~sll~~~~~~~~~~-mH~lv~~~~ 301 (1314)
......+++.|.+.+++.... +.|. .|++++++.
T Consensus 322 ---~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 322 ---DSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp ---HHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred ---HHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 122345789999999997642 4566 578888774
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=4.2e-10 Score=126.72 Aligned_cols=95 Identities=12% Similarity=0.216 Sum_probs=46.5
Q ss_pred CCCccEEEcccCCCc--ccCCCcCCCCccEEEeCCCCCCcccCchhhhC--------CCcccEEEecCCcCCCCCc-ccc
Q 042307 330 LKNCTAISLHNCKIG--ELVDGLECPRLKFFHISPREGFIKIPDNFFTR--------LTELRVLDFTDMHLLSLPS-SLH 398 (1314)
Q Consensus 330 ~~~l~~l~l~~~~l~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~--------l~~L~~L~Ls~n~~~~lp~-~~~ 398 (1314)
+++++.|+|++|.+. ..+.. .++.++.+.+..+ .+|..+|.+ +.+|+.|+|.. .++.+++ .|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS-SSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCccc-ccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 567888888888876 22211 1111233333322 344455555 55555555555 4555532 355
Q ss_pred cCccCcEEEcCCCcCCCc--cccCCCCCCCEEEc
Q 042307 399 LLVNLRTLCLDNGVLGDV--AVIGELKQLEILSF 430 (1314)
Q Consensus 399 ~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L 430 (1314)
++++|+.+++++|.+..+ ..|..+.++.++.+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecC
Confidence 555555555555554433 33444444444443
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.1e-09 Score=109.56 Aligned_cols=100 Identities=21% Similarity=0.393 Sum_probs=50.7
Q ss_pred cEEEcccCCCcccCCCcCCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcC
Q 042307 334 TAISLHNCKIGELVDGLECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVL 413 (1314)
Q Consensus 334 ~~l~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~ 413 (1314)
+.+++++|.+..+|..+. ++|++|++++|.+. .+++..|.++++|++|+|++|.++.+|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----------------- 75 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTG----------------- 75 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------------
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChh-----------------
Confidence 456666666666655432 44555555554432 22223334444555555555544444332
Q ss_pred CCccccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEeeccC
Q 042307 414 GDVAVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNLSSC 456 (1314)
Q Consensus 414 ~~~~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 456 (1314)
.|+++++|++|+|++|.++.+|.. ++.+++|++|++++|
T Consensus 76 ----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 76 ----VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ----HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 245555555555555555555543 555566666666555
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=3.6e-09 Score=105.49 Aligned_cols=79 Identities=30% Similarity=0.422 Sum_probs=42.9
Q ss_pred CcccEEEecCCcCCCC-CcccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchh-hcCCCCCCEEee
Q 042307 378 TELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPRE-IGQLTRLRSLNL 453 (1314)
Q Consensus 378 ~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 453 (1314)
++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+ ..|+++++|++|+|++|.++.+|.. ++.+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 3445555555555544 33455555555555555555443 2345566666666666666655543 556666666666
Q ss_pred ccC
Q 042307 454 SSC 456 (1314)
Q Consensus 454 ~~~ 456 (1314)
++|
T Consensus 110 ~~N 112 (170)
T 3g39_A 110 LNN 112 (170)
T ss_dssp CSS
T ss_pred CCC
Confidence 665
No 147
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.82 E-value=3.3e-08 Score=114.31 Aligned_cols=257 Identities=14% Similarity=0.077 Sum_probs=151.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-----C-CCEEEEEEeccCc-CHHHHHHHHHHHh-CCCcc--ccChhHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-----L-FDEVVYADVSQTP-DIKKIQGQIADKL-GLKFY--EESESGRARKLC 71 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-----~-f~~~~wv~~~~~~-~~~~~~~~i~~~l-~~~~~--~~~~~~~~~~~~ 71 (1314)
|.|+|++|+|||++|+.+++...... . ...++|+++.... +...++..+++.+ +.... +.........+.
T Consensus 48 vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 127 (384)
T 2qby_B 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIK 127 (384)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 78999999999999999998864321 1 3357899988776 8888888888887 33221 122234456666
Q ss_pred HHHhcCCeEEEEEeCCCCccc-------ccccCCCCCCCCceEEEEeccccc----ccc-ccCCCccEEecCCCHHHHHH
Q 042307 72 ERLRKEKKILVILDNIWANLD-------LENVGIPFGDRGCGVLMTARSQDV----LSS-KMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 72 ~~l~~~~~~LlvlD~v~~~~~-------~~~~~~~~~~~~~~ilvTtr~~~~----~~~-~~~~~~~~~l~~l~~~ea~~ 139 (1314)
..+.+.+. +||+||++.... +..+... . .+..+|+||+.... ... .......+.+++++.++..+
T Consensus 128 ~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~-~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~ 204 (384)
T 2qby_B 128 NGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRS-D-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKF 204 (384)
T ss_dssp HHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTS-S-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHH
T ss_pred HHhccCCC-EEEEECHHHhccCCCCceeHHHHhcC-C-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHH
Confidence 66653344 999999976521 2222111 1 56788999887532 111 01212389999999999999
Q ss_pred HHHHHhCC-CCCCccHHHHHHHHHHHhC---CcHH-HHHHHHHHH--h---cC-ChhHHHHHHHHhcCCCCCCCCCCchh
Q 042307 140 LFKKLVGD-KIENNDLKAVAVDIAKACG---GLPI-AIVTIARAL--R---NK-NTFEWKNALRELTRPSSSSFSGVPAE 208 (1314)
Q Consensus 140 l~~~~~~~-~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l--~---~~-~~~~w~~~~~~l~~~~~~~~~~~~~~ 208 (1314)
++..++.. .....-.++..+.+++.++ |.|. |+.++.... + .. +.+.+..+++....
T Consensus 205 il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~------------ 272 (384)
T 2qby_B 205 ILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ------------ 272 (384)
T ss_dssp HHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc------------
Confidence 99987631 1111122345677888887 8876 444433322 2 12 66677776665421
Q ss_pred hhhheeecccccCchhhHHHHHhhccccccCCcCHH-HHHHhhcccccccCcCCHHHHHHHHHHHHHHHhhcccccc
Q 042307 209 AYKSIELSYNHLEGEELKSTFLLCCLMDFIENPSVL-YLLSYGMGLGLFKGTHTMEEARDRALTLVDKLKNSCLLLD 284 (1314)
Q Consensus 209 ~~~~l~~s~~~L~~~~~~~~f~~~~~~~fp~~~~i~-~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~ 284 (1314)
..+..+++.|++. .+..+..++. . ..+-++. .........| ... . ....+.++++.|.+.++++.
T Consensus 273 --~~~~~~~~~l~~~-~~~~l~al~~-~-~~~~~~~~~~~~~~~~~g-~~~-~----~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 273 --ERLIEAVKALPFH-YKLALRSLIE-S-EDVMSAHKMYTDLCNKFK-QKP-L----SYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp --HHHHHHHHSSCHH-HHHHHHHHHT-C-CBHHHHHHHHHHHHHHTT-CCC-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred --chHHHHHHcCCHH-HHHHHHHHHH-h-cccChHHHHHHHHHHHcC-CCC-C----CHHHHHHHHHHHHhCCCEEE
Confidence 2344556778776 3555555554 1 1101221 1111111112 111 1 12344567899999999975
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=7.8e-08 Score=110.18 Aligned_cols=255 Identities=10% Similarity=0.142 Sum_probs=133.2
Q ss_pred CCccEEEcccCCCcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEE
Q 042307 331 KNCTAISLHNCKIGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLC 407 (1314)
Q Consensus 331 ~~l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~ 407 (1314)
..++.+.+.+ .+..++... ++ +|+.+.+..+ ...++..+|.+. +|+.+.+.. .+..+ +..|.++.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 3444444443 244444332 32 5666666544 345555556553 466666654 45555 33466666666666
Q ss_pred cCCCcCCCc--cccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 408 LDNGVLGDV--AVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 408 L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+.+|.+..+ ..|. ..+|+.+.+..+ ++.++ ..|.++++|+.+++.. .+..++...+.+ .+|+.+.+..+ +.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-cc
Confidence 666665544 3333 456666666533 55443 3355666666666655 355565555555 56666666322 21
Q ss_pred cccccCCcccccccCcccccCCCCCcEEEeEecCCC-----CCCCcccccccceeEEEEccccCCCCCCccceEEEeecC
Q 042307 485 WETEGQSSSERSRASLHELKHLSSLNTLEIQVRDPK-----VLPKGFLSQKLKRYKVFIGDEWNWPDSYENQRILKLKLN 559 (1314)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~l~~l~l~~~ 559 (1314)
......+.++++|+.+.+..+... .++... +..+.+|+.+.+. +
T Consensus 261 ------------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a------------------F~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 261 ------------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC------------------LEGCPKLARFEIP-E 309 (401)
T ss_dssp ------------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT------------------TTTCTTCCEECCC-T
T ss_pred ------------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHH------------------hhCCccCCeEEeC-C
Confidence 112234556666666666554432 122211 2334444555554 3
Q ss_pred CccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCCCCCCCcCC-ccceecccC
Q 042307 560 ASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTELVPLDAFP-LLESLSLSN 637 (1314)
Q Consensus 560 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~~~-~L~~L~l~~ 637 (1314)
....+....|..+.+|+.+.+... +..+.. -.+.++ +|+.+.+.++.... +.. .....++ ++..|.+..
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~-~aF~~~-~L~~l~l~~n~~~~-l~~----~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN--VTQINF-SAFNNT-GIKEVKVEGTTPPQ-VFE----KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT--CCEECT-TSSSSS-CCCEEEECCSSCCB-CCC----SSCCCSCTTCCEEEECG
T ss_pred ceEEEhhhhhcCCCCccEEEECcc--ccEEcH-HhCCCC-CCCEEEEcCCCCcc-ccc----ccccCCCCCccEEEeCH
Confidence 344555667778888888888543 222222 223556 89999998875321 110 1222333 566776655
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=3.8e-07 Score=104.50 Aligned_cols=150 Identities=13% Similarity=0.205 Sum_probs=112.1
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCcCCCc--cccCCCCCCCE
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEI 427 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~ 427 (1314)
.+..++.+.+..+ ...++..+|.+. +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .+..+ ..|.++.+|+.
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3467777777654 467888888886 7999999876 777744 5777 4799999986 55554 67999999999
Q ss_pred EEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccccccccCCcccccccCcccccCCC
Q 042307 428 LSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQWETEGQSSSERSRASLHELKHLS 507 (1314)
Q Consensus 428 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 507 (1314)
++++.|+++.+|...-...+|+.+.+.. .+..++...+.++.+|+.+.+..+ +. ......+.+ .
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~------------~I~~~aF~~-~ 248 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VS------------TIGQEAFRE-S 248 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CC------------EECTTTTTT-C
T ss_pred eecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-cc------------Ccccccccc-C
Confidence 9999999999987655579999999985 588999888999999999999764 22 111223444 5
Q ss_pred CCcEEEeEecCCCCCC
Q 042307 508 SLNTLEIQVRDPKVLP 523 (1314)
Q Consensus 508 ~L~~L~l~~~~~~~~~ 523 (1314)
+|+.+.+. +.+..++
T Consensus 249 ~L~~i~lp-~~i~~I~ 263 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIA 263 (401)
T ss_dssp CCSEEEEE-TTCCEEC
T ss_pred CccEEEeC-CCccEEC
Confidence 78888773 3344333
No 150
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=5.8e-08 Score=112.57 Aligned_cols=218 Identities=17% Similarity=0.113 Sum_probs=129.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccC-CCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc--ChhHHHHHHHHHHhc-
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKL-FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE--SESGRARKLCERLRK- 76 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~- 76 (1314)
.|.|+|++|+||||+|+.+++....... -..++|+++....+...+...+++.++...... ........+...+..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 126 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY 126 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 4789999999999999999988753311 235789998777777788888888776543221 223335556666654
Q ss_pred CCeEEEEEeCCCCcc------cccccCCCC---CCCCceEEEEecccccccc---c--cC-CCccEEecCCCHHHHHHHH
Q 042307 77 EKKILVILDNIWANL------DLENVGIPF---GDRGCGVLMTARSQDVLSS---K--MD-CQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~------~~~~~~~~~---~~~~~~ilvTtr~~~~~~~---~--~~-~~~~~~l~~l~~~ea~~l~ 141 (1314)
+++.+||+|+++... .+..+.... ...+..+|+||+....... . .+ ....+.+++++.++..+++
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il 206 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHH
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHH
Confidence 358999999987542 111211001 2335667888876543221 0 01 1247999999999999999
Q ss_pred HHHhCC-CCCCccHHHHHHHHHHHhC---CcHH-HHHHHHHHH--h---c--C-ChhHHHHHHHHhcCCCCCCCCCCchh
Q 042307 142 KKLVGD-KIENNDLKAVAVDIAKACG---GLPI-AIVTIARAL--R---N--K-NTFEWKNALRELTRPSSSSFSGVPAE 208 (1314)
Q Consensus 142 ~~~~~~-~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l--~---~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~ 208 (1314)
...+.. .....-..++.+.+++.++ |.|. ++.++.... . + . +.+.+..+++...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~------------- 273 (386)
T 2qby_A 207 TKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE------------- 273 (386)
T ss_dssp HHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------------
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------------
Confidence 886531 0111223456777888887 9987 433332221 1 1 1 4455555554432
Q ss_pred hhhheeecccccCchhhHHHHHhhc
Q 042307 209 AYKSIELSYNHLEGEELKSTFLLCC 233 (1314)
Q Consensus 209 ~~~~l~~s~~~L~~~~~~~~f~~~~ 233 (1314)
...+.-.++.+++. .+..+..++
T Consensus 274 -~~~~~~~~~~l~~~-~~~il~ai~ 296 (386)
T 2qby_A 274 -RDRVRDIILTLPFH-SKLVLMAVV 296 (386)
T ss_dssp -HHHHHHHHHTSCHH-HHHHHHHHH
T ss_pred -hchHHHHHHcCCHH-HHHHHHHHH
Confidence 12334455667766 355555444
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.69 E-value=1.9e-09 Score=122.32 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=112.4
Q ss_pred cCCCccEEEcccCCCcccCC-----Cc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-Cccc---
Q 042307 329 TLKNCTAISLHNCKIGELVD-----GL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSL--- 397 (1314)
Q Consensus 329 ~~~~l~~l~l~~~~l~~l~~-----~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~--- 397 (1314)
..+.++.+++++|.++.... .+ .+++|++|++++|.+.......++..+++|++|+|++|.+... ...+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 35578899999999865322 11 3468999999999865444444455667899999999988742 2222
Q ss_pred --ccCccCcEEEcCCCcCCCc------cccCCCCCCCEEEccCccCcc-----cchhhcCCCCCCEEeeccCCCCCccch
Q 042307 398 --HLLVNLRTLCLDNGVLGDV------AVIGELKQLEILSFQGSNIEQ-----LPREIGQLTRLRSLNLSSCYQLKAISS 464 (1314)
Q Consensus 398 --~~l~~L~~L~L~~~~~~~~------~~~~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~~~~ 464 (1314)
...++|++|+|++|.++.. ..+..+++|++|+|++|.++. ++..+...++|++|+|++| .++....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHH
Confidence 2467899999999987642 345778899999999998873 3566778889999999998 5664332
Q ss_pred h----hhcCCCCCcEEEcCCCccc
Q 042307 465 N----VISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 465 ~----~l~~l~~L~~L~l~~~~~~ 484 (1314)
. .+...++|++|++++|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 2 1445688999999999875
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=7.5e-08 Score=108.23 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=72.9
Q ss_pred CCCCCEEEccCccCcccch-hhcCCCCCCEEeeccCCCCCccchhhhcCCCCCc-EEEcCCCccccccccCCcccccccC
Q 042307 422 LKQLEILSFQGSNIEQLPR-EIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLE-ELYLGDTFIQWETEGQSSSERSRAS 499 (1314)
Q Consensus 422 L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~ 499 (1314)
+.+|+.|++++|+++.+|. .|..+++|+.|++..+ +..++...|.++.+|+ .+++.+ .+. ...
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~------------~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVT------------AIE 289 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCC------------EEC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cce------------EEc
Confidence 7889999999988888875 4788999999999885 8888888889999998 998876 443 223
Q ss_pred cccccCCCCCcEEEeEecCCCCCCCcc
Q 042307 500 LHELKHLSSLNTLEIQVRDPKVLPKGF 526 (1314)
Q Consensus 500 ~~~l~~l~~L~~L~l~~~~~~~~~~~~ 526 (1314)
...+.++++|+.++++.+.+..++..+
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKITTLGDEL 316 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred hhhhhCCccCCEEEeCCCccCccchhh
Confidence 357888899999999888888887765
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=6.3e-08 Score=110.05 Aligned_cols=100 Identities=29% Similarity=0.278 Sum_probs=69.6
Q ss_pred EEEecCC-cCCCCCcccccCccCcEEEcCC-CcCCCc--cccCCCCCCCEEEccCccCcccc-hhhcCCCCCCEEeeccC
Q 042307 382 VLDFTDM-HLLSLPSSLHLLVNLRTLCLDN-GVLGDV--AVIGELKQLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSC 456 (1314)
Q Consensus 382 ~L~Ls~n-~~~~lp~~~~~l~~L~~L~L~~-~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 456 (1314)
.++++++ .++.+|. +..+++|++|+|++ |.++.+ ..|++|.+|++|+|++|.++.+| ..|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466666 6777777 77777777777775 776654 45777777777777777777654 35677777777777776
Q ss_pred CCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 457 YQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
.+..+|...+..+. |++|++.+|.+.
T Consensus 91 -~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 -ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66777766455554 777777777654
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.63 E-value=5.5e-09 Score=118.59 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=116.8
Q ss_pred CCCCccEEEeCCCCCCcccCchh---hh-CCCcccEEEecCCcCCC--CCcccccCccCcEEEcCCCcCCCc--ccc---
Q 042307 351 ECPRLKFFHISPREGFIKIPDNF---FT-RLTELRVLDFTDMHLLS--LPSSLHLLVNLRTLCLDNGVLGDV--AVI--- 419 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~---f~-~l~~L~~L~Ls~n~~~~--lp~~~~~l~~L~~L~L~~~~~~~~--~~~--- 419 (1314)
..++|+.|++++|.+.......+ +. ...+|++|+|++|.+.. +......+.+|++|+|++|.++.. ..+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 34679999999998643322221 12 33799999999999873 222234567899999999998753 222
Q ss_pred --CCCCCCCEEEccCccCcc-----cchhhcCCCCCCEEeeccCCCCCccc----hhhhcCCCCCcEEEcCCCccccccc
Q 042307 420 --GELKQLEILSFQGSNIEQ-----LPREIGQLTRLRSLNLSSCYQLKAIS----SNVISNLSQLEELYLGDTFIQWETE 488 (1314)
Q Consensus 420 --~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (1314)
....+|++|+|++|.++. ++..+..+++|++|+|++| .++... ...+...++|++|++++|.+....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-
Confidence 357899999999999863 5666788999999999998 465432 223667889999999999885111
Q ss_pred cCCcccccccCcccccCCCCCcEEEeEecCCCC
Q 042307 489 GQSSSERSRASLHELKHLSSLNTLEIQVRDPKV 521 (1314)
Q Consensus 489 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 521 (1314)
.......+...++|++|++++|.+..
T Consensus 228 -------~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 -------ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp -------HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred -------HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 12334456678899999999998653
No 155
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.62 E-value=3.4e-07 Score=106.09 Aligned_cols=263 Identities=16% Similarity=0.114 Sum_probs=150.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc----CCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc--ChhHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK----LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE--SESGRARKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l 74 (1314)
.|.|+|++|+||||+|+.+++...... .-..++|+++....+...+...+++.++...... ........+...+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998875321 1124788998888888999999999997654322 2233355666666
Q ss_pred hc-CCeEEEEEeCCCCcccc----cccC----CCC--C-CCCceEEEEeccccccc----cc-cCCC-ccEEecCCCHHH
Q 042307 75 RK-EKKILVILDNIWANLDL----ENVG----IPF--G-DRGCGVLMTARSQDVLS----SK-MDCQ-NNFLVGALNESE 136 (1314)
Q Consensus 75 ~~-~~~~LlvlD~v~~~~~~----~~~~----~~~--~-~~~~~ilvTtr~~~~~~----~~-~~~~-~~~~l~~l~~~e 136 (1314)
.. +++.+||+|+++....- +.+. ... . ..+..+|.||+...... .. .... ..+.+++++.++
T Consensus 126 ~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~ 205 (387)
T 2v1u_A 126 SRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQ 205 (387)
T ss_dssp TTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHH
T ss_pred hccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHH
Confidence 53 46899999999865321 1111 111 1 34567788887653211 00 1111 468899999999
Q ss_pred HHHHHHHHhCC-CCCCccHHHHHHHHHHHhC---CcHH-HHHHHHHHH---h--c--C-ChhHHHHHHHHhcCCCCCCCC
Q 042307 137 AWDLFKKLVGD-KIENNDLKAVAVDIAKACG---GLPI-AIVTIARAL---R--N--K-NTFEWKNALRELTRPSSSSFS 203 (1314)
Q Consensus 137 a~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l---~--~--~-~~~~w~~~~~~l~~~~~~~~~ 203 (1314)
..+++..++.. .....-..++++.+++.++ |.|. ++.++.... . + . +.+.+..+++....
T Consensus 206 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~------- 278 (387)
T 2v1u_A 206 LRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER------- 278 (387)
T ss_dssp HHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-------
Confidence 99999887631 0011112345667888887 9994 333332221 1 1 1 55666666554321
Q ss_pred CCchhhhhheeecccccCchhhHHHHHhhc-cccccCCcCHHHHHHhhc----ccccccCcCCHHHHHHHHHHHHHHHhh
Q 042307 204 GVPAEAYKSIELSYNHLEGEELKSTFLLCC-LMDFIENPSVLYLLSYGM----GLGLFKGTHTMEEARDRALTLVDKLKN 278 (1314)
Q Consensus 204 ~~~~~~~~~l~~s~~~L~~~~~~~~f~~~~-~~~fp~~~~i~~l~~~w~----~~~~~~~~~~~~~~~~~~~~~l~~L~~ 278 (1314)
..+.-++..++++ .+..+...+ .+.-...+....+.+.+. ..| ... . ....+..++++|..
T Consensus 279 -------~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~----~~~~~~~~l~~L~~ 344 (387)
T 2v1u_A 279 -------DRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH-V----TLRRVSGIISELDM 344 (387)
T ss_dssp -------HHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC-C----CHHHHHHHHHHHHH
T ss_pred -------chHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC-C----CHHHHHHHHHHHHh
Confidence 1234456778877 355554444 311011233332222211 112 111 1 12345567899999
Q ss_pred cccccc
Q 042307 279 SCLLLD 284 (1314)
Q Consensus 279 ~sll~~ 284 (1314)
.++++.
T Consensus 345 ~gli~~ 350 (387)
T 2v1u_A 345 LGIVKS 350 (387)
T ss_dssp TTSEEE
T ss_pred CCCeEE
Confidence 999875
No 156
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.60 E-value=2.5e-07 Score=99.59 Aligned_cols=170 Identities=11% Similarity=0.113 Sum_probs=95.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC-----ccccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK-----FYEESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~~~~l~- 75 (1314)
+.|+|++|+||||+|+.+++.......+.. ..+... .. ...+....... ............+.+.+.
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC---DN-CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 120 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCS---HH-HHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCccc---HH-HHHHhccCCcceEEecCcccccHHHHHHHHHHhhh
Confidence 789999999999999999988764321110 000000 00 00010000000 000011122222332221
Q ss_pred ---cCCeEEEEEeCCCCc--ccccccCC--CCCCCCceEEEEecccccccc-ccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 76 ---KEKKILVILDNIWAN--LDLENVGI--PFGDRGCGVLMTARSQDVLSS-KMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 76 ---~~~~~LlvlD~v~~~--~~~~~~~~--~~~~~~~~ilvTtr~~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
.+++.+||+||++.. +.++.+.. .....+..+|+||+....... .......+.+++++.+|..+++...+..
T Consensus 121 ~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 121 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 246799999999764 22332211 112346788888876542221 1223467999999999999999987732
Q ss_pred CCCCccHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPIAIVTIARAL 179 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 179 (1314)
... ....+.++.|++.++|.|..+..+...+
T Consensus 201 ~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 201 EHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 2224567899999999999888776544
No 157
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.58 E-value=6.3e-07 Score=94.62 Aligned_cols=159 Identities=11% Similarity=0.073 Sum_probs=96.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++.......-...+.++.+...........+........ ....++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~v 105 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP---------------IGGAPFKI 105 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC---------------STTCSCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccC---------------CCccCceE
Confidence 789999999999999999988643322223555665554443333222222111100 01257899
Q ss_pred EEEeCCCCcc--cccccC--CCCCCCCceEEEEecccccccc-ccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccHHH
Q 042307 82 VILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQDVLSS-KMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDLKA 156 (1314)
Q Consensus 82 lvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~ 156 (1314)
+|+||++... ..+.+. ......+.++|+||+....... .......+.+++++.++..+++.+.+...... -.++
T Consensus 106 liiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 184 (226)
T 2chg_A 106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITED 184 (226)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHH
T ss_pred EEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC-CCHH
Confidence 9999997652 222221 1112346788888876542211 12223478999999999999998877321111 2245
Q ss_pred HHHHHHHHhCCcHHHHHHHH
Q 042307 157 VAVDIAKACGGLPIAIVTIA 176 (1314)
Q Consensus 157 ~~~~i~~~~~g~Plai~~~~ 176 (1314)
.++.+++.++|.|..+..+.
T Consensus 185 ~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 185 GLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 67789999999998654443
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.51 E-value=1.4e-06 Score=100.83 Aligned_cols=260 Identities=15% Similarity=0.116 Sum_probs=151.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcccc--ChhHHHHHHHHHHhc-CC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEE--SESGRARKLCERLRK-EK 78 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~-~~ 78 (1314)
+.|+|++|+||||+|+.++....... -..++|+++....+...+...++..++...... ........+...+.. ++
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 78999999999999999998876331 125788998888888899999999987653322 233344455555543 56
Q ss_pred eEEEEEeCCCCc--cccccc---CCCCCC---CCceEEEEeccccccccccC-------CCccEEecCCCHHHHHHHHHH
Q 042307 79 KILVILDNIWAN--LDLENV---GIPFGD---RGCGVLMTARSQDVLSSKMD-------CQNNFLVGALNESEAWDLFKK 143 (1314)
Q Consensus 79 ~~LlvlD~v~~~--~~~~~~---~~~~~~---~~~~ilvTtr~~~~~~~~~~-------~~~~~~l~~l~~~ea~~l~~~ 143 (1314)
+.+||+|+++.. +.+..+ ...... .+..+|++|+....... +. ....+.+++++.++..+++..
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~-l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~ 204 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN-LDPSTRGIMGKYVIRFSPYTKDQIFDILLD 204 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT-SCHHHHHHHTTCEEECCCCBHHHHHHHHHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH-hCHHhhhcCCCceEEeCCCCHHHHHHHHHH
Confidence 899999999765 222222 111111 36678888876533221 11 123699999999999999988
Q ss_pred HhCC-CCCCccHHHHHHHHHHHh---------CCcHHHHHHHHHH-H--h---cC---ChhHHHHHHHHhcCCCCCCCCC
Q 042307 144 LVGD-KIENNDLKAVAVDIAKAC---------GGLPIAIVTIARA-L--R---NK---NTFEWKNALRELTRPSSSSFSG 204 (1314)
Q Consensus 144 ~~~~-~~~~~~~~~~~~~i~~~~---------~g~Plai~~~~~~-l--~---~~---~~~~w~~~~~~l~~~~~~~~~~ 204 (1314)
.+.. .....-..+.++.+++.+ +|.|..+..+... . + +. +.+....+.+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------- 276 (389)
T 1fnn_A 205 RAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF-------- 276 (389)
T ss_dssp HHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC--------
T ss_pred HHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh--------
Confidence 7632 001122356778899999 7887543333222 1 1 11 33344444443321
Q ss_pred CchhhhhheeecccccCchhhHHHHHhhccccc-cC--CcCHHHHHHhhcc----cccccCcCCHHHHHHHHHHHHHHHh
Q 042307 205 VPAEAYKSIELSYNHLEGEELKSTFLLCCLMDF-IE--NPSVLYLLSYGMG----LGLFKGTHTMEEARDRALTLVDKLK 277 (1314)
Q Consensus 205 ~~~~~~~~l~~s~~~L~~~~~~~~f~~~~~~~f-p~--~~~i~~l~~~w~~----~~~~~~~~~~~~~~~~~~~~l~~L~ 277 (1314)
..+.-.++.|+.+ .+.++..++.+.. .. ......+...+.. .|.. . . ....+..++++|.
T Consensus 277 ------~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~-~----~~~~~~~~l~~L~ 343 (389)
T 1fnn_A 277 ------GISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER-P-R----VHSQLWSYLNDLR 343 (389)
T ss_dssp ------CCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC-C-C----CHHHHHHHHHHHH
T ss_pred ------hhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC-C-C----CHHHHHHHHHHHH
Confidence 1223335567776 4666655554210 01 2333333322211 1111 1 0 1233556789999
Q ss_pred hcccccc
Q 042307 278 NSCLLLD 284 (1314)
Q Consensus 278 ~~sll~~ 284 (1314)
..+++..
T Consensus 344 ~~gli~~ 350 (389)
T 1fnn_A 344 EKGIVET 350 (389)
T ss_dssp HTTSSEE
T ss_pred hCCCeEE
Confidence 9999865
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=2.2e-07 Score=105.47 Aligned_cols=87 Identities=24% Similarity=0.192 Sum_probs=49.2
Q ss_pred ccCchhhhCCCcccEEEecC-CcCCCCC-cccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccchhhc
Q 042307 368 KIPDNFFTRLTELRVLDFTD-MHLLSLP-SSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPREIG 443 (1314)
Q Consensus 368 ~~~~~~f~~l~~L~~L~Ls~-n~~~~lp-~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~i~ 443 (1314)
.+|. +..+.+|++|+|++ |.+..+| ..|.++++|++|+|++|.++.+ ..|++|++|++|+|++|.++.+|..+.
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 3444 35555555566654 5555553 3455566666666666655543 345666666666666666666655433
Q ss_pred CCCCCCEEeeccC
Q 042307 444 QLTRLRSLNLSSC 456 (1314)
Q Consensus 444 ~L~~L~~L~L~~~ 456 (1314)
....|++|+|.+|
T Consensus 101 ~~~~L~~l~l~~N 113 (347)
T 2ifg_A 101 QGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCCEEECCSS
T ss_pred ccCCceEEEeeCC
Confidence 3333666666665
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.5e-06 Score=90.32 Aligned_cols=144 Identities=8% Similarity=0.089 Sum_probs=89.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-----CCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-cChhHHHHHHHHHH-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-----FDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-ESESGRARKLCERL- 74 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~l- 74 (1314)
|.|+|++|+|||++|+.++++...... --.+++|++....+...++..|++++...... ......+..+...+
T Consensus 48 lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~ 127 (318)
T 3te6_A 48 FYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP 127 (318)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh
Confidence 679999999999999999999864211 11367888888888899999999999654221 12233444444443
Q ss_pred -hcCCeEEEEEeCCCCcccccccC--CCC-CCCCce--EEEEecccccccccc------CC-CccEEecCCCHHHHHHHH
Q 042307 75 -RKEKKILVILDNIWANLDLENVG--IPF-GDRGCG--VLMTARSQDVLSSKM------DC-QNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 75 -~~~~~~LlvlD~v~~~~~~~~~~--~~~-~~~~~~--ilvTtr~~~~~~~~~------~~-~~~~~l~~l~~~ea~~l~ 141 (1314)
..++++++|+|+++...+-+.++ ..+ ....++ +|.++.........+ +. ...+.+++++.+|-.+++
T Consensus 128 ~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il 207 (318)
T 3te6_A 128 KAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMI 207 (318)
T ss_dssp GGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred hccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHH
Confidence 23678999999998763111110 000 012333 344454433221101 11 246889999999999999
Q ss_pred HHHh
Q 042307 142 KKLV 145 (1314)
Q Consensus 142 ~~~~ 145 (1314)
..++
T Consensus 208 ~~Rl 211 (318)
T 3te6_A 208 ITRL 211 (318)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8887
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.29 E-value=1.4e-05 Score=92.20 Aligned_cols=64 Identities=13% Similarity=0.236 Sum_probs=37.2
Q ss_pred CcccCCCc--CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEEEcC
Q 042307 343 IGELVDGL--ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLD 409 (1314)
Q Consensus 343 l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~ 409 (1314)
+..+.... +|.+|+.+.+..+ ...+...+|.++.+|+.+++..+ ++.++ ..|.++.+|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 34444433 6667777776533 34566666777777777777543 44443 346666666665554
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=4.4e-06 Score=93.73 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=94.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+|||++|+.+++..........+++++.+.......+ +.+++.+..... .+..+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~-------------~~~~~~~~v 110 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKKL-------------HLPPGKHKI 110 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCC-------------CCCTTCCEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHhccc-------------cCCCCCceE
Confidence 689999999999999999988643211123556665543333222 122221110000 000245899
Q ss_pred EEEeCCCCcc--cccccC--CCCCCCCceEEEEecccccc-ccccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccHHH
Q 042307 82 VILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQDVL-SSKMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDLKA 156 (1314)
Q Consensus 82 lvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~~~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~ 156 (1314)
+|+||++... ..+.+. ......++++|+||+..... .........+++.+++.++..+++...+..... .-.++
T Consensus 111 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 189 (323)
T 1sxj_B 111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV-KYTND 189 (323)
T ss_dssp EEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHH
T ss_pred EEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC-CCCHH
Confidence 9999998642 222221 11123567888887664322 111223457999999999999999887631111 12245
Q ss_pred HHHHHHHHhCCcHH-HHHHHHH
Q 042307 157 VAVDIAKACGGLPI-AIVTIAR 177 (1314)
Q Consensus 157 ~~~~i~~~~~g~Pl-ai~~~~~ 177 (1314)
.+..|++.++|.|. |+..+..
T Consensus 190 ~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 190 GLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 67899999999995 4555443
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=3.4e-06 Score=94.45 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=96.6
Q ss_pred CCCCccEEEeCCCCCC--------cccCchhhhCCCcccEEEecCCcCCCCCcccccCccCcEEEcCCCcCCC--ccccC
Q 042307 351 ECPRLKFFHISPREGF--------IKIPDNFFTRLTELRVLDFTDMHLLSLPSSLHLLVNLRTLCLDNGVLGD--VAVIG 420 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~--------~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~~~ 420 (1314)
.+++|+.|.+...... ..-...++..+++|+.|+|+++.-..+|. +. +++|+.|++..|.+.. +..++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHH
Confidence 5667777777654210 01122455778889999998874334544 43 7889999998887653 23343
Q ss_pred --CCCCCCEEEccCc--c------Ccccchhh--cCCCCCCEEeeccCCCCCc-cchhhhc---CCCCCcEEEcCCCccc
Q 042307 421 --ELKQLEILSFQGS--N------IEQLPREI--GQLTRLRSLNLSSCYQLKA-ISSNVIS---NLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 421 --~L~~L~~L~L~~~--~------i~~lp~~i--~~L~~L~~L~L~~~~~l~~-~~~~~l~---~l~~L~~L~l~~~~~~ 484 (1314)
.+++|++|+|+.+ . +..+...+ +.+++|++|++++|. +.. .+.. +. .+++|++|+|+.|.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~-la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEM-FLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHH-HHHCSSGGGCSEEECCSSCCB
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHH-HHhCccCCCCCEEECCCCCCC
Confidence 7888999988631 1 22222222 357899999998873 332 2222 32 4778999999888764
Q ss_pred cccccCCcccccccCcccccCCCCCcEEEeEecCC
Q 042307 485 WETEGQSSSERSRASLHELKHLSSLNTLEIQVRDP 519 (1314)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 519 (1314)
.. ........+.++++|+.|+++.|.+
T Consensus 293 d~--------G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 293 DE--------GARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HH--------HHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred hH--------HHHHHHhhcccCCcceEEECCCCcC
Confidence 10 0012334456778899999987754
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.08 E-value=6.3e-05 Score=86.63 Aligned_cols=109 Identities=8% Similarity=0.084 Sum_probs=70.0
Q ss_pred cccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEEEcCCCcCCCc--cccCCCCCCCEEEccCccCcccc-hhh
Q 042307 367 IKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLP-REI 442 (1314)
Q Consensus 367 ~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp-~~i 442 (1314)
..+...+|.++.+|+.+.+.. .++.++ .+|.++.+|+.+++..+ ++.+ ..|.++.+|+.+.+..+ +..++ ..+
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 457778899999999999974 477774 46889999999998755 4433 56777788877766543 33332 234
Q ss_pred cCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 443 GQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 443 ~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
.....+...... ....+....+.++++|+.+.+.++
T Consensus 137 ~~~~~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~ 172 (394)
T 4fs7_A 137 KGCDFKEITIPE---GVTVIGDEAFATCESLEYVSLPDS 172 (394)
T ss_dssp TTCCCSEEECCT---TCCEECTTTTTTCTTCCEEECCTT
T ss_pred ecccccccccCc---cccccchhhhcccCCCcEEecCCc
Confidence 444333332222 334455555777777777777543
No 165
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.07 E-value=5.8e-05 Score=81.43 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=86.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++.... ..+.++++.-.+ ... .........+........+.+
T Consensus 42 vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~a~~~~~~v 101 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVE--------------VIG-GLGAARVRSLFKEARARAPCI 101 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSS--------------SST-THHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHh--------------hcc-ChhHHHHHHHHHHHHhcCCeE
Confidence 679999999999999999987652 244555543211 000 111222334444444456899
Q ss_pred EEEeCCCCcc-----------------cccccC----CCCCCCCceEEEEeccccccccc-c---CCCccEEecCCCHHH
Q 042307 82 VILDNIWANL-----------------DLENVG----IPFGDRGCGVLMTARSQDVLSSK-M---DCQNNFLVGALNESE 136 (1314)
Q Consensus 82 lvlD~v~~~~-----------------~~~~~~----~~~~~~~~~ilvTtr~~~~~~~~-~---~~~~~~~l~~l~~~e 136 (1314)
+++|+++... .+..+. ......+..+|.||+........ . .....+.++..+.++
T Consensus 102 l~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~ 181 (262)
T 2qz4_A 102 VYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181 (262)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred EEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence 9999998641 011110 00012345666677654422111 1 234578889999999
Q ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHH-HHHHH
Q 042307 137 AWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPI-AIVTI 175 (1314)
Q Consensus 137 a~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 175 (1314)
..+++...+...............+++.+.|.+- .+..+
T Consensus 182 r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp HHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 9999988773222222223345678888887643 44444
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.04 E-value=2.8e-05 Score=86.98 Aligned_cols=148 Identities=12% Similarity=0.059 Sum_probs=89.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc--CCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK--EKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~~ 79 (1314)
|.|+|++|+|||++|+.+++.... ..+++++.......++. ..+.+ ...
T Consensus 41 vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~------------------------~~l~~~~~~~ 91 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLA------------------------AILANSLEEG 91 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHH------------------------HHHTTTCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHH------------------------HHHHHhccCC
Confidence 679999999999999999987742 24456554433322211 11221 355
Q ss_pred EEEEEeCCCCcc--ccccc-------C--CC-----------CCCCCceEEEEeccccccccc--cCCCccEEecCCCHH
Q 042307 80 ILVILDNIWANL--DLENV-------G--IP-----------FGDRGCGVLMTARSQDVLSSK--MDCQNNFLVGALNES 135 (1314)
Q Consensus 80 ~LlvlD~v~~~~--~~~~~-------~--~~-----------~~~~~~~ilvTtr~~~~~~~~--~~~~~~~~l~~l~~~ 135 (1314)
.++++|+++... ....+ . .. ...+..++|.||+........ .+....+.+++++.+
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 688888887652 11111 0 00 001235677776654322211 122357899999999
Q ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042307 136 EAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTIARAL 179 (1314)
Q Consensus 136 ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 179 (1314)
|..+++.+.+..... .-..+....+++.++|.|..+..+...+
T Consensus 172 e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 172 ELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999888743221 2234667899999999998777665544
No 167
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=5e-06 Score=80.70 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=51.1
Q ss_pred ccccEEEEecCCCccccccchHHhhcccccEEEEecCCchHHHhhccCCccccccccc----ccccceeeecccCcccee
Q 042307 921 CKLKLMEVKFCKSLRTIFPHNMFARFLKLESLIVGACGSLQEIFDLQELNSEETHSGA----VSRLGKLHVFRLPKLTKI 996 (1314)
Q Consensus 921 ~~L~~L~l~~c~~l~~~~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~i 996 (1314)
.+|+.|++++|. +++.--..+ ..+++|++|++++|..+++-.-. .+.. .++|++|+|++|+++++-
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~--------~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLE--------RLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHH--------HHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHH--------HHHhcccccCCCCEEEcCCCCcCCHH
Confidence 478999999997 765433333 67888888888888877653210 1111 234555555555555442
Q ss_pred cccCCCcceecCcccEEEEecCCCccc
Q 042307 997 WNKDPRGNLIFQNLVLVRIFECQRLKS 1023 (1314)
Q Consensus 997 ~~~~~~~l~~l~~L~~L~l~~c~~L~~ 1023 (1314)
- -..+..+++|++|++++|+++++
T Consensus 131 G---l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 G---IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp H---HHHGGGCTTCCEEEEESCTTCCC
T ss_pred H---HHHHhcCCCCCEEECCCCCCCCc
Confidence 1 11233445555555555555554
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=1.8e-05 Score=88.80 Aligned_cols=158 Identities=12% Similarity=0.093 Sum_probs=91.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHH--HhcCCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCER--LRKEKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--l~~~~~ 79 (1314)
+.|+|++|+||||+|+.+++.......-..++.++.+.......+...+ . ..... +..+++
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~ 111 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKV-K----------------EFARTKPIGGASF 111 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHH-H----------------HHHHSCCGGGCSC
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHH-H----------------HHHhhCCcCCCCC
Confidence 6799999999999999999886422111124455543321111110000 0 00000 111568
Q ss_pred EEEEEeCCCCc--ccccccC--CCCCCCCceEEEEecccccccc-ccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccH
Q 042307 80 ILVILDNIWAN--LDLENVG--IPFGDRGCGVLMTARSQDVLSS-KMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDL 154 (1314)
Q Consensus 80 ~LlvlD~v~~~--~~~~~~~--~~~~~~~~~ilvTtr~~~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~ 154 (1314)
.++|+|+++.. +..+.+. ......++++|+||+....... .......+.+.+++.++..+++...+..... .-.
T Consensus 112 ~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~ 190 (327)
T 1iqp_A 112 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELT 190 (327)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-EEC
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-CCC
Confidence 89999999765 2222221 1112346788888876542111 1112347889999999999999887742221 223
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHH
Q 042307 155 KAVAVDIAKACGGLPIAIVTIAR 177 (1314)
Q Consensus 155 ~~~~~~i~~~~~g~Plai~~~~~ 177 (1314)
.+.++.|++.++|.|..+..+..
T Consensus 191 ~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 191 EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH
Confidence 56678999999999986554433
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.92 E-value=6.7e-05 Score=81.22 Aligned_cols=170 Identities=17% Similarity=0.183 Sum_probs=91.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++... .. .+.++..... ++. ...........+.......+..+
T Consensus 67 vLl~G~~GtGKT~la~~ia~~~~----~~-~~~i~~~~~~------------~g~--~~~~~~~~~~~~~~~~~~~~~~v 127 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAEESN----FP-FIKICSPDKM------------IGF--SETAKCQAMKKIFDDAYKSQLSC 127 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT----CS-EEEEECGGGC------------TTC--CHHHHHHHHHHHHHHHHTSSEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhC----CC-EEEEeCHHHh------------cCC--chHHHHHHHHHHHHHHHhcCCcE
Confidence 67999999999999999999854 22 2333333210 110 00001122233333344467899
Q ss_pred EEEeCCCCc---------------ccccccCCCC--CCCCceEEEEecccccccc---ccCCCccEEecCCCH-HHHHHH
Q 042307 82 VILDNIWAN---------------LDLENVGIPF--GDRGCGVLMTARSQDVLSS---KMDCQNNFLVGALNE-SEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~---------------~~~~~~~~~~--~~~~~~ilvTtr~~~~~~~---~~~~~~~~~l~~l~~-~ea~~l 140 (1314)
|++|+++.. ..+..+.... ......||.||+....... .......+.+++++. ++..++
T Consensus 128 l~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i 207 (272)
T 1d2n_A 128 VVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEA 207 (272)
T ss_dssp EEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHH
T ss_pred EEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHH
Confidence 999998643 1111211111 1223346667776533221 112245688888988 555555
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHhCC------cHHHHHHHHHHHhcCChhHHHHHHHHhcC
Q 042307 141 FKKLVGDKIENNDLKAVAVDIAKACGG------LPIAIVTIARALRNKNTFEWKNALRELTR 196 (1314)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~g------~Plai~~~~~~l~~~~~~~w~~~~~~l~~ 196 (1314)
+.+.. . . ..+....|++.+.| .+-++.++-..........+.++++.+..
T Consensus 208 ~~~~~-~-~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 208 LELLG-N-F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHHHT-C-S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHhcC-C-C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 55432 1 1 24457788888887 44555554443332356677777776654
No 170
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=7.2e-06 Score=79.60 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=43.0
Q ss_pred CcccEEEecCCcCCCC-CcccccCccCcEEEcCCCc-CCC--ccccCCC----CCCCEEEccCc-cCcc-cchhhcCCCC
Q 042307 378 TELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGV-LGD--VAVIGEL----KQLEILSFQGS-NIEQ-LPREIGQLTR 447 (1314)
Q Consensus 378 ~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~-~~~--~~~~~~L----~~L~~L~L~~~-~i~~-lp~~i~~L~~ 447 (1314)
.+|+.||++++.++.. -..+.++++|++|+|++|. +++ +..++.+ ++|++|+|++| +|+. --..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4577777777765532 2334556666666666664 332 2344443 24555555555 3441 1123445555
Q ss_pred CCEEeeccCCCCCc
Q 042307 448 LRSLNLSSCYQLKA 461 (1314)
Q Consensus 448 L~~L~L~~~~~l~~ 461 (1314)
|++|++++|..+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 55555555554444
No 171
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=8.8e-05 Score=82.20 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=89.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||.+|+.+++..... .+.++.+.-.+ ...+ .....+..+....++..+++
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s--------------k~vG-ese~~vr~lF~~Ar~~aP~I 244 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ--------------KYIG-EGSRMVRELFVMAREHAPSI 244 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC--------------SSTT-HHHHHHHHHHHHHHHTCSEE
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc--------------cccc-hHHHHHHHHHHHHHHhCCce
Confidence 6789999999999999999998632 34555443211 1111 12233455555555578999
Q ss_pred EEEeCCCCccc----------------cccc----CCCCCCCCceEEEEeccccccccc----cCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LENV----GIPFGDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~----~~~~~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea 137 (1314)
|++|+++.... +..+ .......+..||.||...+....+ .+....+.++..+.++.
T Consensus 245 IFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R 324 (405)
T 4b4t_J 245 IFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAAR 324 (405)
T ss_dssp EEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHH
Confidence 99999986510 0011 000122445677778776644322 24567899999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
.++|+.+........+. ...+|++.+.|.
T Consensus 325 ~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~ 353 (405)
T 4b4t_J 325 AEILRIHSRKMNLTRGI--NLRKVAEKMNGC 353 (405)
T ss_dssp HHHHHHHHTTSBCCSSC--CHHHHHHHCCSC
T ss_pred HHHHHHHhcCCCCCccC--CHHHHHHHCCCC
Confidence 99999888532211111 145777888775
No 172
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.88 E-value=0.00031 Score=77.62 Aligned_cols=156 Identities=21% Similarity=0.254 Sum_probs=92.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++.... ...+.++.+.-. ....+ ........+........+.+
T Consensus 48 iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~--------------~~~~g-~~~~~~~~lf~~a~~~~~~v 108 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLV--------------SKWLG-ESEKLVKNLFQLARENKPSI 108 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSC--------------CSSCC-SCHHHHHHHHHHHHHTSSEE
T ss_pred EEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHH--------------hhhhh-HHHHHHHHHHHHHHhcCCcE
Confidence 679999999999999999988631 123445544321 01111 12233444555555567899
Q ss_pred EEEeCCCCccc-------------cccc-----CCCCCCCCceEEEEecccccccc--ccCCCccEEecCCCHHHHHHHH
Q 042307 82 VILDNIWANLD-------------LENV-----GIPFGDRGCGVLMTARSQDVLSS--KMDCQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 82 lvlD~v~~~~~-------------~~~~-----~~~~~~~~~~ilvTtr~~~~~~~--~~~~~~~~~l~~l~~~ea~~l~ 141 (1314)
|+||+++.... ...+ +......+..||.||........ ..+....+.++..+.++..+++
T Consensus 109 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il 188 (322)
T 1xwi_A 109 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMF 188 (322)
T ss_dssp EEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred EEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHH
Confidence 99999986510 0011 01112234456666665432221 1134467888999999999999
Q ss_pred HHHhCCCCCCccHHHHHHHHHHHhCCc-HHHHHHHHH
Q 042307 142 KKLVGDKIENNDLKAVAVDIAKACGGL-PIAIVTIAR 177 (1314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 177 (1314)
..++....... .......|++.+.|. +-.|..+..
T Consensus 189 ~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 189 KLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 98885432211 245577899999887 555666554
No 173
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.85 E-value=7.3e-06 Score=82.53 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=60.1
Q ss_pred hhCCCcccEEEecCC-cCC-----CCCcccccCccCcEEEcCCCcCCCc------cccCCCCCCCEEEccCccCcc----
Q 042307 374 FTRLTELRVLDFTDM-HLL-----SLPSSLHLLVNLRTLCLDNGVLGDV------AVIGELKQLEILSFQGSNIEQ---- 437 (1314)
Q Consensus 374 f~~l~~L~~L~Ls~n-~~~-----~lp~~~~~l~~L~~L~L~~~~~~~~------~~~~~L~~L~~L~L~~~~i~~---- 437 (1314)
+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.+- ..+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 355566666666666 554 1334445556666666666665431 334445666677777666652
Q ss_pred -cchhhcCCCCCCEEee--ccCCCCCccch----hhhcCCCCCcEEEcCCCcc
Q 042307 438 -LPREIGQLTRLRSLNL--SSCYQLKAISS----NVISNLSQLEELYLGDTFI 483 (1314)
Q Consensus 438 -lp~~i~~L~~L~~L~L--~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~ 483 (1314)
+...+...++|++|+| ++| .++.-.. ..+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3445555666777777 544 3433211 1134446677777666655
No 174
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.85 E-value=8.6e-05 Score=82.87 Aligned_cols=156 Identities=11% Similarity=0.114 Sum_probs=90.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHH--HhcCCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCER--LRKEKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--l~~~~~ 79 (1314)
+.++|++|+|||++|+.+++.......-..++.++.+.......+ .......... +..+++
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 103 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV-----------------RHKIKEFARTAPIGGAPF 103 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS-----------------SHHHHHHHHSCCSSSCCC
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH-----------------HHHHHHHHhcCCCCCCCc
Confidence 679999999999999999988632211112345555442111100 0001111100 012568
Q ss_pred EEEEEeCCCCcc--cccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccH
Q 042307 80 ILVILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDL 154 (1314)
Q Consensus 80 ~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~ 154 (1314)
.++|+|+++... ..+.+. ......++++|+||+... +..........+.+.+++.++..+++...+..... .-.
T Consensus 104 ~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~ 182 (319)
T 2chq_A 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-KIT 182 (319)
T ss_dssp EEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-CBC
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-CCC
Confidence 899999987652 222221 111234567777776644 22211223457999999999999999887743222 123
Q ss_pred HHHHHHHHHHhCCcHHHHHHH
Q 042307 155 KAVAVDIAKACGGLPIAIVTI 175 (1314)
Q Consensus 155 ~~~~~~i~~~~~g~Plai~~~ 175 (1314)
.+.+..+++.++|.+..+...
T Consensus 183 ~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 183 EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 456788999999998755443
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.83 E-value=2.6e-05 Score=90.26 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=92.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+||||||+.+++.......-..++++++.. ....+...+... ....+..... .+..+
T Consensus 133 lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~--------~~~~~~~~~~-~~~~v 197 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVDSMKEG--------KLNEFREKYR-KKVDI 197 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHHHHHTT--------CHHHHHHHHT-TTCSE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHcc--------cHHHHHHHhc-CCCCE
Confidence 68999999999999999998875331122367777543 233333333211 0122333332 26779
Q ss_pred EEEeCCCCccc----ccccCCC---CCCCCceEEEEecccccc-----cc---ccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWANLD----LENVGIP---FGDRGCGVLMTARSQDVL-----SS---KMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~~~----~~~~~~~---~~~~~~~ilvTtr~~~~~-----~~---~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
|++||++.... .+.+... ....|..||+||.+.... .. +......+.+++++.++..+++.+.+.
T Consensus 198 L~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp EEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 99999865421 1111111 123567888888763211 10 122225678899999999999988773
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
.... .-..+++..|++.++|.+..+.-
T Consensus 278 ~~~~-~i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 278 IEHG-ELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHTC-CCCTTHHHHHHHHCCSCHHHHHH
T ss_pred HcCC-CCCHHHHHHHHHhcCCCHHHHHH
Confidence 1110 01124467889999998865443
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.82 E-value=0.00013 Score=79.57 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=87.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++.... ..+.++.+.-.. ... .........+........+.+
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~v 113 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELVK--------------KFI-GEGASLVKDIFKLAKEKAPSI 113 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC--------------CST-THHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHHH--------------hcc-chHHHHHHHHHHHHHHcCCeE
Confidence 689999999999999999988642 234444432110 000 011222334444444467789
Q ss_pred EEEeCCCCcc----------------ccccc----CCCCCCCCceEEEEeccccccccc----cCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL----------------DLENV----GIPFGDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~----------------~~~~~----~~~~~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea 137 (1314)
+++|+++... .+..+ .......+..||.||+........ ......+.++..+.++.
T Consensus 114 l~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r 193 (285)
T 3h4m_A 114 IFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193 (285)
T ss_dssp EEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHH
T ss_pred EEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHH
Confidence 9999996531 11111 000122356677788765433211 12334788999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCC-cHHHHHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGG-LPIAIVTI 175 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 175 (1314)
.+++...+....... ......+++...| .|-.+..+
T Consensus 194 ~~il~~~~~~~~~~~--~~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 194 LEILKIHTRKMNLAE--DVNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp HHHHHHHHTTSCBCT--TCCHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCC--cCCHHHHHHHcCCCCHHHHHHH
Confidence 999998885322111 1124567777777 46454443
No 177
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.80 E-value=5.9e-05 Score=86.38 Aligned_cols=167 Identities=11% Similarity=0.124 Sum_probs=89.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCc-----cccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKF-----YEESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~- 75 (1314)
+.|+|++|+||||+|+.+++.......+.. ..+.... ....+...-.... ...........+...+.
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCD----NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 113 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSSH----HHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcccH----HHHHHhccCCCceEEecccccCCHHHHHHHHHHHhh
Confidence 679999999999999999988753221110 0000000 0011110000000 00011112233333333
Q ss_pred ---cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHHHHHHHHHHhCC
Q 042307 76 ---KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESEAWDLFKKLVGD 147 (1314)
Q Consensus 76 ---~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 147 (1314)
.+++.++|+||++... ..+.+. ......+..+|++|.... +..........+++.+++.++..+++.+.+..
T Consensus 114 ~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp CCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH
Confidence 2467899999987652 222221 111233556776765443 22211223467899999999999999877631
Q ss_pred CCCCccHHHHHHHHHHHhCCcHHHHHHHH
Q 042307 148 KIENNDLKAVAVDIAKACGGLPIAIVTIA 176 (1314)
Q Consensus 148 ~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 176 (1314)
... ....+.+..|++.++|.|..+..+.
T Consensus 194 ~~~-~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 194 EHI-AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTC-CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 1124567789999999998766554
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=4.3e-05 Score=90.83 Aligned_cols=178 Identities=11% Similarity=0.095 Sum_probs=96.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHH-hcCCeE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERL-RKEKKI 80 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~~ 80 (1314)
+.|+|++|+||||+|+.+++... + .++.++++.......+. ..+........ ...........+ ...++.
T Consensus 80 lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~~~~~~~~~-~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 150 (516)
T 1sxj_A 80 AMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKTLLN-AGVKNALDNMS---VVGYFKHNEEAQNLNGKHF 150 (516)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHHHHH-HTGGGGTTBCC---STTTTTC----CCSSTTSE
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCCcchHHHHH-HHHHHHhcccc---HHHHHhhhhhhhhccCCCe
Confidence 68999999999999999998873 2 35667766654433222 21111111000 000000000001 125788
Q ss_pred EEEEeCCCCccc-----ccccCCCCCCCCceEEEEecccc---ccccccCCCccEEecCCCHHHHHHHHHHHhC---CCC
Q 042307 81 LVILDNIWANLD-----LENVGIPFGDRGCGVLMTARSQD---VLSSKMDCQNNFLVGALNESEAWDLFKKLVG---DKI 149 (1314)
Q Consensus 81 LlvlD~v~~~~~-----~~~~~~~~~~~~~~ilvTtr~~~---~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~---~~~ 149 (1314)
+||+|+|+.... +..+.......+..||+++.... +.. .......+.+++++.++..+.+.+.+. ...
T Consensus 151 vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i 229 (516)
T 1sxj_A 151 VIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL 229 (516)
T ss_dssp EEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 999999876521 12221111123445666665533 222 223345789999999999999887663 222
Q ss_pred CCccHHHHHHHHHHHhCC-cHHHHHHHHHHHhcC---ChhHHHHHHHH
Q 042307 150 ENNDLKAVAVDIAKACGG-LPIAIVTIARALRNK---NTFEWKNALRE 193 (1314)
Q Consensus 150 ~~~~~~~~~~~i~~~~~g-~Plai~~~~~~l~~~---~~~~w~~~~~~ 193 (1314)
+ .+....|++.++| .+.|+..+....... +.+..+.+...
T Consensus 230 ~----~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 230 D----PNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKA 273 (516)
T ss_dssp C----TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHH
T ss_pred C----HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Confidence 2 2346788999998 455666654333222 44444444443
No 179
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00017 Score=80.97 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=87.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||.+|+.+++..... .+.++.+.-. ....+ .....+..+....+...+++
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~--------------sk~vG-esek~ir~lF~~Ar~~aP~I 305 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELV--------------QKYVG-EGARMVRELFEMARTKKACI 305 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC--------------CCSSS-HHHHHHHHHHHHHHHTCSEE
T ss_pred eEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhh--------------cccCC-HHHHHHHHHHHHHHhcCCce
Confidence 6789999999999999999998632 3445544311 11111 11233445555555578999
Q ss_pred EEEeCCCCccc--------------------ccccCCCCCCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD--------------------LENVGIPFGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~--------------------~~~~~~~~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
|++|+++.... +..+.......+..||.||........++ +....+.++..+.++.
T Consensus 306 IfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R 385 (467)
T 4b4t_H 306 IFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGR 385 (467)
T ss_dssp EEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHH
T ss_pred EeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHH
Confidence 99999985510 00110011123445667776655433221 4566788888999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
.++|+.++.......+. ....|++.+.|.
T Consensus 386 ~~Ilk~~l~~~~l~~dv--dl~~LA~~T~Gf 414 (467)
T 4b4t_H 386 ANIFRIHSKSMSVERGI--RWELISRLCPNS 414 (467)
T ss_dssp HHHHHHHHTTSCBCSSC--CHHHHHHHCCSC
T ss_pred HHHHHHHhcCCCCCCCC--CHHHHHHHCCCC
Confidence 99999888532211111 134677888775
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.72 E-value=2.4e-05 Score=87.53 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=69.1
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCC-CCcccc--cCccCcEEEcCCC--c------CCCc-cc
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLS-LPSSLH--LLVNLRTLCLDNG--V------LGDV-AV 418 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~-lp~~~~--~l~~L~~L~L~~~--~------~~~~-~~ 418 (1314)
.+++|+.|.++++.. ..++. +. +.+|+.|++..+.+.. ....+. .+++|++|+|+.+ . +..+ ..
T Consensus 170 ~~P~L~~L~L~g~~~-l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN-LSIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBT-CBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCC-ceecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 456666666666531 12332 22 5667777776665541 111222 5667777776421 1 1111 11
Q ss_pred c--CCCCCCCEEEccCccCc-ccchhh---cCCCCCCEEeeccCCCCCcc-----chhhhcCCCCCcEEEcCCCccc
Q 042307 419 I--GELKQLEILSFQGSNIE-QLPREI---GQLTRLRSLNLSSCYQLKAI-----SSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 419 ~--~~L~~L~~L~L~~~~i~-~lp~~i---~~L~~L~~L~L~~~~~l~~~-----~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
+ +.+++|++|+|++|.+. ..+..+ ..+++|++|+|+.| .++.. +.. +.++++|+.|++++|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 1 34677888888777665 222222 24677888888775 45442 211 345677888888777664
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.70 E-value=0.00028 Score=78.19 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=91.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++.... ..+.++.+. +.. ... ......+..+........+.+
T Consensus 54 vLl~GppGtGKT~la~aia~~~~~-----~~~~v~~~~----------l~~----~~~-g~~~~~~~~~f~~a~~~~~~v 113 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSSD----------LVS----KWM-GESEKLVKQLFAMARENKPSI 113 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHHHTC-----EEEEEEHHH----------HHT----TTG-GGHHHHHHHHHHHHHHTSSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHCC-----CEEEEchHH----------Hhh----ccc-chHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999988642 234454322 110 001 112233444555555567789
Q ss_pred EEEeCCCCccc-------------cccc----C-CCCCCCCceEEEEecccccccc--ccCCCccEEecCCCHHHHHHHH
Q 042307 82 VILDNIWANLD-------------LENV----G-IPFGDRGCGVLMTARSQDVLSS--KMDCQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 82 lvlD~v~~~~~-------------~~~~----~-~~~~~~~~~ilvTtr~~~~~~~--~~~~~~~~~l~~l~~~ea~~l~ 141 (1314)
|+||+++.... ...+ . ......+..||.||+....... ..+....+.++..+.++..+++
T Consensus 114 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il 193 (322)
T 3eie_A 114 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 193 (322)
T ss_dssp EEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred EEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHH
Confidence 99999975411 1111 0 0112234556667766443221 1133456788899999999999
Q ss_pred HHHhCCCCCCccHHHHHHHHHHHhCC-cHHHHHHHHH
Q 042307 142 KKLVGDKIENNDLKAVAVDIAKACGG-LPIAIVTIAR 177 (1314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 177 (1314)
..++....... .......|++.+.| .+-.|..+..
T Consensus 194 ~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 194 EINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred HHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99886433221 23456789999887 4656655544
No 182
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00017 Score=79.99 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=85.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||.+|+.+++..... .+.++.++- .....+ .....+..+.....+..+++
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l--------------~sk~vG-esek~ir~lF~~Ar~~aP~I 278 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSEL--------------IQKYLG-DGPRLCRQIFKVAGENAPSI 278 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGG--------------CCSSSS-HHHHHHHHHHHHHHHTCSEE
T ss_pred CceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHh--------------hhccCc-hHHHHHHHHHHHHHhcCCcE
Confidence 6799999999999999999998632 334443321 111111 12233445555555578999
Q ss_pred EEEeCCCCcccc----------------ccc----CCCCCCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLDL----------------ENV----GIPFGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~~----------------~~~----~~~~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
|++|+++....- ..+ .......+..||.||...+....++ +....+.++.-+.++.
T Consensus 279 IfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R 358 (437)
T 4b4t_I 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTK 358 (437)
T ss_dssp EEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHH
T ss_pred EEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHH
Confidence 999998754100 000 0001123446777787766444322 3345677888899999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
.++|..+........+. ....||+.+.|.
T Consensus 359 ~~Il~~~l~~~~l~~dv--dl~~LA~~T~Gf 387 (437)
T 4b4t_I 359 KKILGIHTSKMNLSEDV--NLETLVTTKDDL 387 (437)
T ss_dssp HHHHHHHHTTSCBCSCC--CHHHHHHHCCSC
T ss_pred HHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 99999888532211111 134677777764
No 183
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.68 E-value=0.00041 Score=76.19 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=87.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.++..... ..+.++++.-.. ... .........+........+.+
T Consensus 57 vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~--------------~~~-~~~~~~~~~~~~~~~~~~~~v 116 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS--------------KYV-GDGEKLVRALFAVARHMQPSI 116 (297)
T ss_dssp EEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS--------------SSC-SCHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh--------------ccc-chHHHHHHHHHHHHHHcCCcE
Confidence 689999999999999999987641 234555443211 001 112223333444444467789
Q ss_pred EEEeCCCCcccc-----------------ccc-CCCCC--CCCceEEEEeccccccccc--cCCCccEEecCCCHHHHHH
Q 042307 82 VILDNIWANLDL-----------------ENV-GIPFG--DRGCGVLMTARSQDVLSSK--MDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 82 lvlD~v~~~~~~-----------------~~~-~~~~~--~~~~~ilvTtr~~~~~~~~--~~~~~~~~l~~l~~~ea~~ 139 (1314)
|++|+++....- ..+ ..+.. ..+..||.||......... ......+.++..+.++..+
T Consensus 117 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~ 196 (297)
T 3b9p_A 117 IFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTREL 196 (297)
T ss_dssp EEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHH
T ss_pred EEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHH
Confidence 999998654110 000 01111 1234566677664322111 1233567788888889888
Q ss_pred HHHHHhCCCCCCccHHHHHHHHHHHhCCcHH-HHHHHHH
Q 042307 140 LFKKLVGDKIENNDLKAVAVDIAKACGGLPI-AIVTIAR 177 (1314)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 177 (1314)
++...+...... ...+....+++.+.|.+- ++..+..
T Consensus 197 il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 197 LLNRLLQKQGSP-LDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp HHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 888776422111 123456788999988765 5555443
No 184
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00024 Score=80.33 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=86.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||.+|+.+++..... .+.++.+.-.+ ...+ .....+..+........+++
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s--------------k~~G-ese~~ir~~F~~A~~~~P~I 277 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD--------------KYIG-ESARIIREMFAYAKEHEPCI 277 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC--------------SSSS-HHHHHHHHHHHHHHHSCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc--------------ccch-HHHHHHHHHHHHHHhcCCce
Confidence 6789999999999999999998632 44555443211 1111 11233444555555578999
Q ss_pred EEEeCCCCccc----------------cccc----CCCCCCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LENV----GIPFGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~----~~~~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
|++|+++.... +..+ .-.....+..||.||........++ +....+.++..+.++.
T Consensus 278 ifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R 357 (437)
T 4b4t_L 278 IFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357 (437)
T ss_dssp EEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHH
T ss_pred eeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHH
Confidence 99999985410 0011 0011223456778887765443222 2355788888899999
Q ss_pred HHHHHHHhCCCC--CCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDKI--ENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~~--~~~~~~~~~~~i~~~~~g~ 168 (1314)
.++|..+..... .+.+ ...+++.+.|.
T Consensus 358 ~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~ 386 (437)
T 4b4t_L 358 LEIFKIHTAKVKKTGEFD----FEAAVKMSDGF 386 (437)
T ss_dssp HHHHHHHHHTSCBCSCCC----HHHHHHTCCSC
T ss_pred HHHHHHHhcCCCCCcccC----HHHHHHhCCCC
Confidence 999988874321 1222 34677777764
No 185
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00013 Score=82.35 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=84.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||.+|+.+++..... .+.++.+.-. ....+ .....+..+........+++
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~--------------~~~vG-ese~~ir~lF~~A~~~aP~I 277 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLV--------------QMYIG-EGAKLVRDAFALAKEKAPTI 277 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC--------------SSCSS-HHHHHHHHHHHHHHHHCSEE
T ss_pred eEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhh--------------hcccc-hHHHHHHHHHHHHHhcCCeE
Confidence 6789999999999999999998632 3445543311 11111 11233444444444467899
Q ss_pred EEEeCCCCcc-------c-------------ccccCCCCCCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL-------D-------------LENVGIPFGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~-------~-------------~~~~~~~~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
|++|+++... . +..+.......+..||.||........++ +....+.++..+.++.
T Consensus 278 ifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R 357 (434)
T 4b4t_M 278 IFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSR 357 (434)
T ss_dssp EEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHH
T ss_pred EeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHH
Confidence 9999986430 0 01111111223445666887766443322 3456788888999999
Q ss_pred HHHHHHHhCCC--CCCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDK--IENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~--~~~~~~~~~~~~i~~~~~g~ 168 (1314)
.++|..+.... ..+.+ ..+|++.+.|.
T Consensus 358 ~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 358 AQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp HHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred HHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 99998777321 11222 34677778764
No 186
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.65 E-value=1.8e-05 Score=84.37 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=88.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+||||+|+.+++..... ...++|++++..... + . ...+.+ .++.+
T Consensus 55 ~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~--------~---------~~~~~~--~~~~v 107 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------S--------T---------ALLEGL--EQFDL 107 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------C--------G---------GGGTTG--GGSSE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------H--------H---------HHHHhc--cCCCE
Confidence 6899999999999999999987643 335778887542110 0 0 000111 34568
Q ss_pred EEEeCCCCccc----ccccCCC---CCCCCc-eEEEEecccccc-----cc---ccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 82 VILDNIWANLD----LENVGIP---FGDRGC-GVLMTARSQDVL-----SS---KMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 82 lvlD~v~~~~~----~~~~~~~---~~~~~~-~ilvTtr~~~~~-----~~---~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
+|+||++.... .+.+... ....+. ++|+||+...-. .. .......+.+++++.++..+++...+
T Consensus 108 liiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 108 ICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp EEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 99999875421 1111100 011222 488887754310 10 01112678999999999999998877
Q ss_pred CCCCCCccHHHHHHHHHHHhCCcHHHHHHH
Q 042307 146 GDKIENNDLKAVAVDIAKACGGLPIAIVTI 175 (1314)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 175 (1314)
..... .-..+.++.+++.++|.+..+..+
T Consensus 188 ~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 188 AMRGL-QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHTTC-CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHcCC-CCCHHHHHHHHHHccCCHHHHHHH
Confidence 32111 223566788999999988766544
No 187
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=3.7e-05 Score=81.11 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=53.4
Q ss_pred hCCCcccEEEecCCcCCCCC---cccccCccCcEEEcCCCcCCCccccCCCC--CCCEEEccCccCc-ccch-------h
Q 042307 375 TRLTELRVLDFTDMHLLSLP---SSLHLLVNLRTLCLDNGVLGDVAVIGELK--QLEILSFQGSNIE-QLPR-------E 441 (1314)
Q Consensus 375 ~~l~~L~~L~Ls~n~~~~lp---~~~~~l~~L~~L~L~~~~~~~~~~~~~L~--~L~~L~L~~~~i~-~lp~-------~ 441 (1314)
.++++|+.|+|++|.+..++ ..+..+++|++|+|++|.++.+..++.++ +|++|+|++|.+. .+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 45778888888888877653 45667788888888888877665455444 7788888887775 3442 2
Q ss_pred hcCCCCCCEEe
Q 042307 442 IGQLTRLRSLN 452 (1314)
Q Consensus 442 i~~L~~L~~L~ 452 (1314)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45666666665
No 188
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=3.3e-05 Score=77.65 Aligned_cols=106 Identities=11% Similarity=0.111 Sum_probs=74.9
Q ss_pred CCCCccEEEeCCC-CCCccc---CchhhhCCCcccEEEecCCcCCC-----CCcccccCccCcEEEcCCCcCCCc-----
Q 042307 351 ECPRLKFFHISPR-EGFIKI---PDNFFTRLTELRVLDFTDMHLLS-----LPSSLHLLVNLRTLCLDNGVLGDV----- 416 (1314)
Q Consensus 351 ~~~~L~~L~l~~~-~~~~~~---~~~~f~~l~~L~~L~Ls~n~~~~-----lp~~~~~l~~L~~L~L~~~~~~~~----- 416 (1314)
..+.|++|++++| .+...- -...+...++|++|+|++|.+.. +...+...++|++|+|++|.+.+-
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4566777777776 543211 11234667788888888888762 445566667889999999888752
Q ss_pred -cccCCCCCCCEEEc--cCccCcc-----cchhhcCCCCCCEEeeccC
Q 042307 417 -AVIGELKQLEILSF--QGSNIEQ-----LPREIGQLTRLRSLNLSSC 456 (1314)
Q Consensus 417 -~~~~~L~~L~~L~L--~~~~i~~-----lp~~i~~L~~L~~L~L~~~ 456 (1314)
..+...++|++|+| ++|.+.. +...+...++|++|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 56777788999999 7788862 4455667788999999887
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.59 E-value=0.0009 Score=75.01 Aligned_cols=155 Identities=20% Similarity=0.219 Sum_probs=90.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++.... ..+.++.+. + .. ...+. .......+........+.+
T Consensus 87 iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~~~------l----~~----~~~g~-~~~~~~~~f~~a~~~~~~v 146 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSSD------L----VS----KWMGE-SEKLVKQLFAMARENKPSI 146 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEHHH------H----HS----CC----CHHHHHHHHHHHHHTSSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeHHH------H----hh----hhcch-HHHHHHHHHHHHHHcCCeE
Confidence 789999999999999999998752 234444321 1 11 01111 1223344444444467899
Q ss_pred EEEeCCCCccc-------------ccccC-----CCCCCCCceEEEEecccccccc--ccCCCccEEecCCCHHHHHHHH
Q 042307 82 VILDNIWANLD-------------LENVG-----IPFGDRGCGVLMTARSQDVLSS--KMDCQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 82 lvlD~v~~~~~-------------~~~~~-----~~~~~~~~~ilvTtr~~~~~~~--~~~~~~~~~l~~l~~~ea~~l~ 141 (1314)
|+||+++.... ...+. ......+..||.||........ ..+....+.++..+.++..+++
T Consensus 147 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il 226 (355)
T 2qp9_X 147 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 226 (355)
T ss_dssp EEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred EEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHH
Confidence 99999875421 11110 0011234556666765532221 1134467788999999999999
Q ss_pred HHHhCCCCCCccHHHHHHHHHHHhCC-cHHHHHHHHH
Q 042307 142 KKLVGDKIENNDLKAVAVDIAKACGG-LPIAIVTIAR 177 (1314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 177 (1314)
..++....... .......|++.+.| .+-.|..+..
T Consensus 227 ~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 227 EINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 98885432211 24456789999988 4555655543
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.59 E-value=0.00026 Score=79.46 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=85.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++..... .+.+++........ ....... .....+
T Consensus 58 vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~---------------------~~~~~~~--~~~~~v 109 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGD---------------------LAAILTN--LSEGDI 109 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHH---------------------HHHHHHT--CCTTCE
T ss_pred EEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhH---------------------HHHHHHh--ccCCCE
Confidence 7899999999999999998876421 34444433221111 1111111 145678
Q ss_pred EEEeCCCCcc--c-------ccccCC-------------CCCCCCceEEEEecccccccc--ccCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL--D-------LENVGI-------------PFGDRGCGVLMTARSQDVLSS--KMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~--~-------~~~~~~-------------~~~~~~~~ilvTtr~~~~~~~--~~~~~~~~~l~~l~~~ea 137 (1314)
+++|+++... . ++.... ....+...+|.+|........ ..+....+.+++++.++.
T Consensus 110 l~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 110 LFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSEL 189 (338)
T ss_dssp EEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHH
T ss_pred EEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHH
Confidence 8888887551 0 111100 011123566666665432221 122346799999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVTI 175 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 175 (1314)
.+++.+.+.... .....+..+.+++.++|.|-.+..+
T Consensus 190 ~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 190 ALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp HHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 999988774222 2223566788999999999655443
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.58 E-value=0.0006 Score=79.01 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=89.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++.... ...+.++.+.-. . ...+.. ...+..+........+.+
T Consensus 170 vLL~GppGtGKT~lA~aia~~~~~----~~~~~v~~~~l~--~-------~~~g~~------~~~~~~~f~~a~~~~~~v 230 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLV--S-------KWLGES------EKLVKNLFQLARENKPSI 230 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCCS----SEEEEECCC------------------C------CCTHHHHHHHHHHSCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC----CCEEEEeHHHHH--h-------hhcchH------HHHHHHHHHHHHHcCCeE
Confidence 689999999999999999988621 123334333211 0 011111 112334444444467889
Q ss_pred EEEeCCCCccc-------------ccccCCCC-----CCCCceEEEEecccccccc--ccCCCccEEecCCCHHHHHHHH
Q 042307 82 VILDNIWANLD-------------LENVGIPF-----GDRGCGVLMTARSQDVLSS--KMDCQNNFLVGALNESEAWDLF 141 (1314)
Q Consensus 82 lvlD~v~~~~~-------------~~~~~~~~-----~~~~~~ilvTtr~~~~~~~--~~~~~~~~~l~~l~~~ea~~l~ 141 (1314)
|+||+++.... ...+.... ...+..||.||........ ..+....+.++..+.++..+++
T Consensus 231 l~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il 310 (444)
T 2zan_A 231 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMF 310 (444)
T ss_dssp EEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred EEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHH
Confidence 99999986510 11111111 1245566767766543221 1233457788889999999999
Q ss_pred HHHhCCCCCCccHHHHHHHHHHHhCCc-HHHHHHHHH
Q 042307 142 KKLVGDKIENNDLKAVAVDIAKACGGL-PIAIVTIAR 177 (1314)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 177 (1314)
..++...... ........|++.+.|. +-.|..+..
T Consensus 311 ~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 311 RLHLGSTQNS-LTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9888543211 1234567899999884 556665544
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.58 E-value=0.00042 Score=75.88 Aligned_cols=148 Identities=14% Similarity=0.213 Sum_probs=83.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.++..... ..+.++.+ .+.. ..++.. ...+..+........+.+
T Consensus 52 vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~~~------~l~~---~~~g~~------~~~~~~~f~~a~~~~p~i 111 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANECQA-----NFISIKGP------ELLT---MWFGES------EANVREIFDKARQAAPCV 111 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTC-----EEEEECHH------HHHH---HHHTTC------TTHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCcCHHHHHHHHHHHhCC-----CEEEEEhH------HHHh---hhcCch------HHHHHHHHHHHHhcCCeE
Confidence 789999999999999999987641 23334322 2211 112211 122334444444467899
Q ss_pred EEEeCCCCccc----------------ccc----cCCCCCCCCceEEEEeccccccccc-c---CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LEN----VGIPFGDRGCGVLMTARSQDVLSSK-M---DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~----~~~~~~~~~~~ilvTtr~~~~~~~~-~---~~~~~~~l~~l~~~ea 137 (1314)
+++|+++.... ... +.......+..||.||........+ . .....+.++..+.++.
T Consensus 112 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 191 (301)
T 3cf0_A 112 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191 (301)
T ss_dssp EEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred EEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHH
Confidence 99999975310 011 1000122355677777665432211 1 3345788999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
.+++..++......... ....+++.+.|.|-+
T Consensus 192 ~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 192 VAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp HHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred HHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 99998887432211111 134566777777654
No 193
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.55 E-value=0.0005 Score=76.57 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=87.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc--------------------CCCEEEEEEec---cCcCHHHHHHHHHHHhCCCc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK--------------------LFDEVVYADVS---QTPDIKKIQGQIADKLGLKF 58 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~--------------------~f~~~~wv~~~---~~~~~~~~~~~i~~~l~~~~ 58 (1314)
+.++|+.|+|||++|+.+++...... +++ +.++... ....
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~---------------- 89 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLG---------------- 89 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBC----------------
T ss_pred EEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCC----------------
Confidence 57899999999999999998865321 122 3333322 1112
Q ss_pred cccChhHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEe
Q 042307 59 YEESESGRARKLCERLR----KEKKILVILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLV 129 (1314)
Q Consensus 59 ~~~~~~~~~~~~~~~l~----~~~~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l 129 (1314)
.+.+..+.+.+. .+++.++|+|+++... ..+.+. ..-+..++.+|++|++.. +.+........+.+
T Consensus 90 -----i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~ 164 (334)
T 1a5t_A 90 -----VDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYL 164 (334)
T ss_dssp -----HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred -----HHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeC
Confidence 222333333332 1467899999998652 122221 111234566666665543 33322233457999
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 130 GALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 130 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
++++.++..+.+.+... . .++.+..+++.++|.|..+..
T Consensus 165 ~~~~~~~~~~~L~~~~~--~----~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 165 APPPEQYAVTWLSREVT--M----SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp CCCCHHHHHHHHHHHCC--C----CHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999988761 1 235567899999999976543
No 194
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.54 E-value=6.9e-05 Score=76.50 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=68.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhccc-----CCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDK-----LFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR- 75 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~- 75 (1314)
|.|+|++|+|||++|+.+++...... ....++++++.... ...............+...+.
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 112 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV-------------AGAKYRGEFEERLKGVLNDLAK 112 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH-------------TTTCSHHHHHHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh-------------ccCCccccHHHHHHHHHHHHhh
Confidence 68999999999999999998875311 12345666543210 000000001122233333332
Q ss_pred cCCeEEEEEeCCCCccc---------cc-ccCCCCCCCCceEEEEeccccc------cccccCCCccEEecCCCHHHHHH
Q 042307 76 KEKKILVILDNIWANLD---------LE-NVGIPFGDRGCGVLMTARSQDV------LSSKMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 76 ~~~~~LlvlD~v~~~~~---------~~-~~~~~~~~~~~~ilvTtr~~~~------~~~~~~~~~~~~l~~l~~~ea~~ 139 (1314)
.+++.++|+||++.... +. .+.......+..+|+||+.... ..........+.++.++.++..+
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~ 192 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIA 192 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHT
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHH
Confidence 35688999999876521 11 1100011234567777766532 11112223358889999888776
Q ss_pred HH
Q 042307 140 LF 141 (1314)
Q Consensus 140 l~ 141 (1314)
++
T Consensus 193 il 194 (195)
T 1jbk_A 193 IL 194 (195)
T ss_dssp TC
T ss_pred Hh
Confidence 54
No 195
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.53 E-value=0.00075 Score=77.75 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=84.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+||||+|+.+++..... | +.++... .....+ +.+. .........+++.+
T Consensus 53 vLL~GppGtGKTtlAr~ia~~~~~~--f---~~l~a~~-~~~~~i-r~~~----------------~~a~~~~~~~~~~i 109 (447)
T 3pvs_A 53 MILWGPPGTGKTTLAEVIARYANAD--V---ERISAVT-SGVKEI-REAI----------------ERARQNRNAGRRTI 109 (447)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCE--E---EEEETTT-CCHHHH-HHHH----------------HHHHHHHHTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC--e---EEEEecc-CCHHHH-HHHH----------------HHHHHhhhcCCCcE
Confidence 6899999999999999999887522 2 2233221 122221 1111 11111112367899
Q ss_pred EEEeCCCCcc--cccccCCCCCCCCceEEE-Eecccc--ccccccCCCccEEecCCCHHHHHHHHHHHhCCC------CC
Q 042307 82 VILDNIWANL--DLENVGIPFGDRGCGVLM-TARSQD--VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDK------IE 150 (1314)
Q Consensus 82 lvlD~v~~~~--~~~~~~~~~~~~~~~ilv-Ttr~~~--~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~------~~ 150 (1314)
+++|+++... ..+.+..........+|. ||.+.. +..........+.+++++.++..+++.+.+... ..
T Consensus 110 LfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~ 189 (447)
T 3pvs_A 110 LFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQD 189 (447)
T ss_dssp EEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSS
T ss_pred EEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999998662 222221111122234444 444432 111122334578899999999999998887321 11
Q ss_pred CccHHHHHHHHHHHhCCcHHHHHHH
Q 042307 151 NNDLKAVAVDIAKACGGLPIAIVTI 175 (1314)
Q Consensus 151 ~~~~~~~~~~i~~~~~g~Plai~~~ 175 (1314)
..-.++..+.|++.++|.+..+..+
T Consensus 190 ~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 190 IVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 1234567788999999987644433
No 196
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.52 E-value=0.0044 Score=71.09 Aligned_cols=124 Identities=12% Similarity=0.229 Sum_probs=79.2
Q ss_pred CCC-CccEEEeCCCCCCcccCchhhhCCCcccEEEecCCc---CCCCC-cccccCccCcEEEcCCCcCCCc--cccCCCC
Q 042307 351 ECP-RLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMH---LLSLP-SSLHLLVNLRTLCLDNGVLGDV--AVIGELK 423 (1314)
Q Consensus 351 ~~~-~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~---~~~lp-~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~ 423 (1314)
++. .|+...+..+ ...+...+|.++.+|+.+.+..+. ++.++ ..|.++.+|+.+.+..+ +..+ ..|..+.
T Consensus 61 ~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp TCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred CCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 453 4777777643 456777778888888888887653 55553 35777777777666543 2323 5567778
Q ss_pred CCCEEEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 424 QLEILSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 424 ~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
+|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+..+....+.. ..|+.+.+..+
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECTT
T ss_pred ccccccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECCc
Confidence 8888887653 34443 3466778888887765 466666665543 56777776543
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.52 E-value=0.0007 Score=76.13 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=89.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.++..... ..+.++++.-.. ...+ ........+........+.+
T Consensus 120 vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~--------------~~~g-~~~~~~~~~~~~a~~~~~~v 179 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS--------------KWVG-EGEKMVRALFAVARCQQPAV 179 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC--------------SSTT-HHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc--------------cccc-hHHHHHHHHHHHHHhcCCeE
Confidence 679999999999999999987641 245666543211 0000 01122233334444467889
Q ss_pred EEEeCCCCcc-------------ccccc-----CCC-CCCCCceEEEEecccccccc--ccCCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANL-------------DLENV-----GIP-FGDRGCGVLMTARSQDVLSS--KMDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~-------------~~~~~-----~~~-~~~~~~~ilvTtr~~~~~~~--~~~~~~~~~l~~l~~~ea~~l 140 (1314)
|+||+++... ....+ +.. ....+..||.||........ ..+....+.++..+.++..++
T Consensus 180 l~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~i 259 (357)
T 3d8b_A 180 IFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 259 (357)
T ss_dssp EEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHH
T ss_pred EEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHH
Confidence 9999985431 01111 011 11234456666765432211 123345678899999999999
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHhCC-cHHHHHHHHHH
Q 042307 141 FKKLVGDKIENNDLKAVAVDIAKACGG-LPIAIVTIARA 178 (1314)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~ 178 (1314)
+...+...... -..+....|++.+.| .+-.|..+...
T Consensus 260 l~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 260 VINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 98877322111 124567789999988 56677666553
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.52 E-value=0.00019 Score=79.93 Aligned_cols=148 Identities=12% Similarity=0.097 Sum_probs=85.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+||||+|+.+++..... -..++++++.. ....+...+... ....+..... +..+
T Consensus 40 lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~------~~~~~~~~~~~~--------~~~~~~~~~~--~~~v 101 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADD------FAQAMVEHLKKG--------TINEFRNMYK--SVDL 101 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHH------HHHHHHHHHHHT--------CHHHHHHHHH--TCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHH------HHHHHHHHHHcC--------cHHHHHHHhc--CCCE
Confidence 7899999999999999999987533 12366776543 222232222110 1122233332 4679
Q ss_pred EEEeCCCCccc----ccccCCC---CCCCCceEEEEeccccc-----ccc---ccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 82 VILDNIWANLD----LENVGIP---FGDRGCGVLMTARSQDV-----LSS---KMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 82 lvlD~v~~~~~----~~~~~~~---~~~~~~~ilvTtr~~~~-----~~~---~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
+++|+++.... .+.+... ....+.+|++||..... ... +......+.+++ +.++..+++...+.
T Consensus 102 L~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 102 LLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred EEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 99999876431 1111111 11245678888764321 110 112225688999 99999999988773
Q ss_pred CCCCCccHHHHHHHHHHHhCCcHH
Q 042307 147 DKIENNDLKAVAVDIAKACGGLPI 170 (1314)
Q Consensus 147 ~~~~~~~~~~~~~~i~~~~~g~Pl 170 (1314)
.... .-.+++...|++.+ |..-
T Consensus 181 ~~~~-~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 181 EFNL-ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HTTC-CCCHHHHHHHHHHC-SSHH
T ss_pred hcCC-CCCHHHHHHHHHhC-CCHH
Confidence 2111 12245677888888 7654
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=1.9e-05 Score=83.23 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=28.4
Q ss_pred cCccCcEEEcCCCcCCCccc----cCCCCCCCEEEccCccCcccchhhcCCC--CCCEEeeccC
Q 042307 399 LLVNLRTLCLDNGVLGDVAV----IGELKQLEILSFQGSNIEQLPREIGQLT--RLRSLNLSSC 456 (1314)
Q Consensus 399 ~l~~L~~L~L~~~~~~~~~~----~~~L~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~ 456 (1314)
++++|+.|+|++|.+..+.. ++.+++|++|+|++|.++.+ ..+..++ +|++|+|++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC
Confidence 45555666666555554322 23455555555555555544 2233333 5555555554
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00033 Score=79.01 Aligned_cols=143 Identities=19% Similarity=0.234 Sum_probs=81.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||++|+.+++..... .+.++.++-.+ ... ......+..+....++..+++
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~--------------~~~-Ge~e~~ir~lF~~A~~~aP~I 268 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH--------------KYL-GEGPRMVRDVFRLARENAPSI 268 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC--------------SSC-SHHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc--------------ccc-chhHHHHHHHHHHHHHcCCCe
Confidence 6799999999999999999988622 44555544211 111 112233445555555578999
Q ss_pred EEEeCCCCccc----------------ccccC----CCCCCCCceEEEEecccccccccc----CCCccEEecCC-CHHH
Q 042307 82 VILDNIWANLD----------------LENVG----IPFGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGAL-NESE 136 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~~----~~~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l-~~~e 136 (1314)
+++|+++.... +..+. -.....+..||.||........++ +....+.++.+ +.++
T Consensus 269 ifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~ 348 (428)
T 4b4t_K 269 IFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE 348 (428)
T ss_dssp EEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHH
T ss_pred eechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHH
Confidence 99999864310 00110 001224456777887765433221 23456777655 5666
Q ss_pred HHHHHHHHhCCCC--CCccHHHHHHHHHHHhCCc
Q 042307 137 AWDLFKKLVGDKI--ENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 137 a~~l~~~~~~~~~--~~~~~~~~~~~i~~~~~g~ 168 (1314)
..++|..+..... .+.+ ...+++.+.|.
T Consensus 349 R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 349 RRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp HHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 6777777763211 1222 34677777764
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.45 E-value=0.001 Score=76.00 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=87.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++.... .++.++++.-.. .. .+ ........+........+.+
T Consensus 151 vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~--~~------------~g-~~~~~~~~~~~~a~~~~~~i 210 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS--KY------------VG-EGEKLVRALFAVARELQPSI 210 (389)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC----------------------CHHHHHHHHHHHHHSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc--cc------------cc-hHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999887541 245555443221 00 00 01122334444444456789
Q ss_pred EEEeCCCCccc-------------ccccC-----CC-CCCCCceEEEEecccccccc--ccCCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANLD-------------LENVG-----IP-FGDRGCGVLMTARSQDVLSS--KMDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~~-------------~~~~~-----~~-~~~~~~~ilvTtr~~~~~~~--~~~~~~~~~l~~l~~~ea~~l 140 (1314)
|+||+++.... ...+. .. .......||.||........ ..+....+.++..+.++..++
T Consensus 211 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~i 290 (389)
T 3vfd_A 211 IFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLL 290 (389)
T ss_dssp EEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHH
T ss_pred EEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHH
Confidence 99999975410 00110 00 01123456666665432221 112334688899999999999
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHhCCc-HHHHHHHHH
Q 042307 141 FKKLVGDKIENNDLKAVAVDIAKACGGL-PIAIVTIAR 177 (1314)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~ 177 (1314)
+...+...... ...+....|++.+.|. +-++..+..
T Consensus 291 l~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 291 LKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp HHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99888543222 2244677899988885 446665544
No 202
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.00027 Score=80.06 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=90.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCC-CEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHh-cCCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLF-DEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLR-KEKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~ 79 (1314)
+.|+|++|+||||+|+.+++.......+ ..++.++.+.......+...+.............. ..... ...+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 134 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKH------DLENYPCPPY 134 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTT------HHHHSCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchh------hcccCCCCCc
Confidence 6799999999999999999885421111 22455655554333332222211111100000000 00111 1356
Q ss_pred EEEEEeCCCCcc--cccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccH
Q 042307 80 ILVILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDL 154 (1314)
Q Consensus 80 ~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~ 154 (1314)
.++++|+++... ....+. ........++|++|.... +..........+.+.+++.++..+.+...+..... .-.
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~ 213 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV-KCD 213 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-CCC
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-CCC
Confidence 799999987652 111111 111123457777765543 22211122347889999999999999887632221 122
Q ss_pred HHHHHHHHHHhCCcHHHHHH
Q 042307 155 KAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 155 ~~~~~~i~~~~~g~Plai~~ 174 (1314)
++..+.|++.++|.|..+..
T Consensus 214 ~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 214 DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp HHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 56788999999999876443
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.39 E-value=0.0016 Score=69.54 Aligned_cols=151 Identities=22% Similarity=0.238 Sum_probs=83.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+||||+|+.++..... . .+.++.+.-.. ...+ ........+.+......+.+
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~--~---~~~i~~~~~~~--------------~~~~-~~~~~~~~~~~~a~~~~~~i 107 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKV--P---FFTISGSDFVE--------------MFVG-VGASRVRDMFEQAKKAAPCI 107 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC--C---EEEECSCSSTT--------------SCCC-CCHHHHHHHHHHHHTTCSEE
T ss_pred EEEECcCCCCHHHHHHHHHHHcCC--C---EEEEeHHHHHH--------------Hhhh-hhHHHHHHHHHHHHHcCCee
Confidence 679999999999999999987642 1 34454332111 0011 11223344444444456789
Q ss_pred EEEeCCCCccc----------------cccc----CCCCCCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LENV----GIPFGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~----~~~~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
+++|+++.... +..+ .......+..||.||.......... .....+.++..+.++.
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r 187 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence 99999843210 0011 0001123456777776654222111 2345677888899999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCC-cHHHHHH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGG-LPIAIVT 174 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~ 174 (1314)
.+++..+.......++ .....++....| .+--+..
T Consensus 188 ~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 188 EQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp HHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHHH
Confidence 9998887743211111 113467777888 6654443
No 204
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.30 E-value=0.00033 Score=77.57 Aligned_cols=127 Identities=9% Similarity=0.123 Sum_probs=70.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCC--EEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFD--EVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
|.|+|++|+|||++|+.+++......... .++.++.+.- .....+ ........+.... ..
T Consensus 70 vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l--------------~~~~~g-~~~~~~~~~~~~~---~~ 131 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL--------------VGQYIG-HTAPKTKEVLKRA---MG 131 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT--------------CCSSTT-CHHHHHHHHHHHH---TT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh--------------hhhccc-ccHHHHHHHHHhc---CC
Confidence 68999999999999999998875432221 2444443221 111111 1111122222222 34
Q ss_pred EEEEEeCCCCc-----------ccccccCC--CCCCCCceEEEEecccccc------cc-ccCCCccEEecCCCHHHHHH
Q 042307 80 ILVILDNIWAN-----------LDLENVGI--PFGDRGCGVLMTARSQDVL------SS-KMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 80 ~LlvlD~v~~~-----------~~~~~~~~--~~~~~~~~ilvTtr~~~~~------~~-~~~~~~~~~l~~l~~~ea~~ 139 (1314)
.+|++|+++.. .....+.. .....+..+|.||...... +. .-+....+.+++++.++..+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~ 211 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFE 211 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHH
Confidence 59999999743 11111110 1122356777777643211 10 11223678999999999999
Q ss_pred HHHHHhC
Q 042307 140 LFKKLVG 146 (1314)
Q Consensus 140 l~~~~~~ 146 (1314)
++...+.
T Consensus 212 il~~~l~ 218 (309)
T 3syl_A 212 IAGHMLD 218 (309)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988773
No 205
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.25 E-value=0.0026 Score=72.94 Aligned_cols=291 Identities=15% Similarity=0.179 Sum_probs=168.6
Q ss_pred CccEEEcccCCCcccCCCc--CCCCccEEEeCCCC--CCcccCchhhhCCCcccEEEecCCcCCCCC-cccccCccCcEE
Q 042307 332 NCTAISLHNCKIGELVDGL--ECPRLKFFHISPRE--GFIKIPDNFFTRLTELRVLDFTDMHLLSLP-SSLHLLVNLRTL 406 (1314)
Q Consensus 332 ~l~~l~l~~~~l~~l~~~~--~~~~L~~L~l~~~~--~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp-~~~~~l~~L~~L 406 (1314)
.++.+.+..+ +..+.... +|++|+.+.+..+. ....+...+|.++.+|+.+.+..+ ++.++ ..|.++.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4777877643 67776654 89999999987653 345678888999999998887654 55553 458889999999
Q ss_pred EcCCCcCCCc--cccCCCCCCCEEEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 407 CLDNGVLGDV--AVIGELKQLEILSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 407 ~L~~~~~~~~--~~~~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
.+.... ..+ ..+..+..|+.+.+..+ ++.+....-.-.+|+.+.+.. .+..+....+.+..++...........
T Consensus 143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPA--KVTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECT--TCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred ccccee-eeecccceecccccccccccce-eeEeccccccccceeEEEECC--cccccccchhhhccccceecccccccc
Confidence 997543 222 56778889999988764 555544333346788888765 355555555667777776655433221
Q ss_pred cccccC-----------------------Cc-ccccccCcccccCCCCCcEEEeEecCCCCCCCcccccccceeEEEEcc
Q 042307 485 WETEGQ-----------------------SS-SERSRASLHELKHLSSLNTLEIQVRDPKVLPKGFLSQKLKRYKVFIGD 540 (1314)
Q Consensus 485 ~~~~~~-----------------------~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~ 540 (1314)
...... .. ..........+..+..|+.+.+...- ..+...+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~a-------------- 283 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGA-------------- 283 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTT--------------
T ss_pred cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcc--------------
Confidence 111000 00 00011122356778888888764322 1222221
Q ss_pred ccCCCCCCccceEEEeecCCccchhhHHHhhhcccceeecccccCchhhccccccCCCCCCceEEeecCCCceEeccCCC
Q 042307 541 EWNWPDSYENQRILKLKLNASICLKDEFFMQLKGLEELWLDEVQGVENVVYELDREGFPSLKHLHIQNNPYLLCINDSTE 620 (1314)
Q Consensus 541 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~ 620 (1314)
+..+..++.+.+. +....+....|..+.+|+.+.+.+. +..+ ....+.++.+|+++.+..+ +..+..
T Consensus 284 ----F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I-~~~aF~~C~~L~~i~ip~s--v~~I~~--- 350 (394)
T 4gt6_A 284 ----FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQI-LDDAFAGCEQLERIAIPSS--VTKIPE--- 350 (394)
T ss_dssp ----TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEE-CTTTTTTCTTCCEEEECTT--CCBCCG---
T ss_pred ----cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEe-hHhHhhCCCCCCEEEECcc--cCEEhH---
Confidence 2234445555543 3344556677888888888888542 2222 2223366888999888543 222221
Q ss_pred CCCCCcCCccceecccCccchhhhhcCCCccccccccceeEEe
Q 042307 621 LVPLDAFPLLESLSLSNLMNLEKISCSQLRAESFIRLRNLKVE 663 (1314)
Q Consensus 621 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 663 (1314)
.....+++|+.+++.+.. ..+. ......+|+.+.+.
T Consensus 351 -~aF~~C~~L~~i~~~~~~--~~~~----~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 351 -SAFSNCTALNNIEYSGSR--SQWN----AISTDSGLQNLPVA 386 (394)
T ss_dssp -GGGTTCTTCCEEEESSCH--HHHH----TCBCCCCC------
T ss_pred -hHhhCCCCCCEEEECCce--eehh----hhhccCCCCEEEeC
Confidence 134556788888887632 2221 13344566666554
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=0.001 Score=74.54 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=83.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|+.|+||||+|+.++........-..+..++.+.......+.. ....+..... ...+.+-+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~~~~~~--------------~~~~~~~v 113 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN-QIKDFASTRQ--------------IFSKGFKL 113 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT-HHHHHHHBCC--------------SSSCSCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHH-HHHHHHhhcc--------------cCCCCceE
Confidence 68999999999999999999865321111244444443323222211 1111100000 00134788
Q ss_pred EEEeCCCCcc--cccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHHHHHHHHHHhCCCCCCccHHH
Q 042307 82 VILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKIENNDLKA 156 (1314)
Q Consensus 82 lvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~ 156 (1314)
+|+|+++... ..+.+. ...+...++++++|.... +..........+.+.+++.++..+.+...+...... -.++
T Consensus 114 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~-i~~~ 192 (340)
T 1sxj_C 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK-LSPN 192 (340)
T ss_dssp EEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC-BCHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC-CCHH
Confidence 9999987541 111110 111223456777765543 211111223468899999999999888776221111 2245
Q ss_pred HHHHHHHHhCCcHHH
Q 042307 157 VAVDIAKACGGLPIA 171 (1314)
Q Consensus 157 ~~~~i~~~~~g~Pla 171 (1314)
.++.+++.++|.+..
T Consensus 193 ~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 193 AEKALIELSNGDMRR 207 (340)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCCHHH
Confidence 677888888887763
No 207
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.20 E-value=0.0016 Score=74.14 Aligned_cols=49 Identities=2% Similarity=-0.132 Sum_probs=34.3
Q ss_pred ccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhC-CcHHHHHH
Q 042307 125 NNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACG-GLPIAIVT 174 (1314)
Q Consensus 125 ~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plai~~ 174 (1314)
..+.+++++.++..+++..++..... .-..+....|++.+. |.|..+..
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 34789999999999999987742111 223556778888887 77654443
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.00019 Score=71.99 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=54.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
++|+|++|+||||||+.++........+ .+++++ ..+....+...+..... . .+...+. +.-+
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~----~----~~~~~~~--~~~l 103 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD----T----KFLKTVL--NSPV 103 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC----S----HHHHHHH--TCSE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH----H----HHHHHhc--CCCE
Confidence 7899999999999999999987532222 244554 33334444333321111 1 2333332 5568
Q ss_pred EEEeCCCCc--cccc-----ccCCCCCCCCceEEEEeccc
Q 042307 82 VILDNIWAN--LDLE-----NVGIPFGDRGCGVLMTARSQ 114 (1314)
Q Consensus 82 lvlD~v~~~--~~~~-----~~~~~~~~~~~~ilvTtr~~ 114 (1314)
+|+|+++.. +.|. .+.......|..+|+||...
T Consensus 104 lilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 104 LVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp EEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred EEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999732 2222 11001112567888888765
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.18 E-value=0.00055 Score=70.11 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=53.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++..... ...++|+++. .....+...+.. .. ...+...+.+. -+
T Consensus 57 ~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~----~~----~~~~~~~~~~~--~~ 118 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD----QT----MNEKLDYIKKV--PV 118 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-------CC----CHHHHHHHHHS--SE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc----ch----HHHHHHHhcCC--CE
Confidence 6899999999999999999988643 3347777653 333333332211 11 12223333322 38
Q ss_pred EEEeCCCCc--ccccccCC---CCC---CCCceEEEEeccc
Q 042307 82 VILDNIWAN--LDLENVGI---PFG---DRGCGVLMTARSQ 114 (1314)
Q Consensus 82 lvlD~v~~~--~~~~~~~~---~~~---~~~~~ilvTtr~~ 114 (1314)
||+||++.. ..|..-.. ... ..+.++|+||+..
T Consensus 119 lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 119 LMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp EEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 999999653 33322111 000 2456788888754
No 210
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.11 E-value=0.00084 Score=74.74 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=82.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.+.|++|+|||++|+.+++... ..+++++.+... ...+ +..+..+..... ..+++.+
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~~-~~~i-~~~~~~~~~~~~---------------~~~~~~v 108 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDCK-IDFV-RGPLTNFASAAS---------------FDGRQKV 108 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTCC-HHHH-HTHHHHHHHBCC---------------CSSCEEE
T ss_pred EEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccccC-HHHH-HHHHHHHHhhcc---------------cCCCCeE
Confidence 46678899999999999998764 235667755422 2221 111111100000 0137889
Q ss_pred EEEeCCCCcc---cccccCC--CCCCCCceEEEEeccccc-cccccCCCccEEecCCCHHHHHHHHHH-------HhCCC
Q 042307 82 VILDNIWANL---DLENVGI--PFGDRGCGVLMTARSQDV-LSSKMDCQNNFLVGALNESEAWDLFKK-------LVGDK 148 (1314)
Q Consensus 82 lvlD~v~~~~---~~~~~~~--~~~~~~~~ilvTtr~~~~-~~~~~~~~~~~~l~~l~~~ea~~l~~~-------~~~~~ 148 (1314)
+|+|+++... ..+.+.. .....+.++|+||..... ..........+.+++++.++..+++.. .+...
T Consensus 109 liiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~ 188 (324)
T 3u61_B 109 IVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHE 188 (324)
T ss_dssp EEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998764 1222210 001235678888776542 111112234789999998885444322 22111
Q ss_pred CCCccHHHHHHHHHHHhCCcHH-HHHHHHH
Q 042307 149 IENNDLKAVAVDIAKACGGLPI-AIVTIAR 177 (1314)
Q Consensus 149 ~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 177 (1314)
.......+.+..|++.++|.+. |+..+-.
T Consensus 189 ~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~ 218 (324)
T 3u61_B 189 GIAIADMKVVAALVKKNFPDFRKTIGELDS 218 (324)
T ss_dssp TCCBSCHHHHHHHHHHTCSCTTHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1111112567788888888754 4444433
No 211
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.10 E-value=0.0039 Score=67.63 Aligned_cols=145 Identities=12% Similarity=0.167 Sum_probs=74.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHH----hcC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERL----RKE 77 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~~ 77 (1314)
|.++|++|+|||++|+.+++..... ++.+++++-.+ ...+ .....+..+.+.. +..
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~-----~i~v~~~~l~~--------------~~~g-~~~~~i~~~f~~a~~~~~~~ 98 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGIN-----PIMMSAGELES--------------GNAG-EPAKLIRQRYREAAEIIRKG 98 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCC-----CEEEEHHHHHC--------------C----HHHHHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC-----EEEEeHHHhhh--------------ccCc-hhHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999988522 34555432100 0000 0111122222222 346
Q ss_pred CeEEEEEeCCCCccc--------------c-cc---cC------------CCCCCCCceEEEEecccccccccc----CC
Q 042307 78 KKILVILDNIWANLD--------------L-EN---VG------------IPFGDRGCGVLMTARSQDVLSSKM----DC 123 (1314)
Q Consensus 78 ~~~LlvlD~v~~~~~--------------~-~~---~~------------~~~~~~~~~ilvTtr~~~~~~~~~----~~ 123 (1314)
.+.+|+||+++.... + .. +. ......+..||.||........++ +.
T Consensus 99 ~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~ 178 (293)
T 3t15_A 99 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRM 178 (293)
T ss_dssp SCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHE
T ss_pred CCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCC
Confidence 789999999964311 0 00 00 011224567888887654322111 12
Q ss_pred CccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHH
Q 042307 124 QNNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIA 171 (1314)
Q Consensus 124 ~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 171 (1314)
...+.++ +.++..+++..+..... ..... ..+++....|-.+.
T Consensus 179 d~~i~~P--~~~~r~~Il~~~~~~~~--~~~~~-l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 179 EKFYWAP--TREDRIGVCTGIFRTDN--VPAED-VVKIVDNFPGQSID 221 (293)
T ss_dssp EEEEECC--CHHHHHHHHHHHHGGGC--CCHHH-HHHHHHHSCSCCHH
T ss_pred ceeEeCc--CHHHHHHHHHHhccCCC--CCHHH-HHHHhCCCCcccHH
Confidence 2334443 88999999987774321 22333 33556666665554
No 212
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.00052 Score=77.70 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=58.4
Q ss_pred CCeEEEEEeCCCCccc--ccccC--CCCCCCCceEEEEecccc-ccccccCCCccEEecCCCHHHHHHHHHHHhCCCCCC
Q 042307 77 EKKILVILDNIWANLD--LENVG--IPFGDRGCGVLMTARSQD-VLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKIEN 151 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~~--~~~~~--~~~~~~~~~ilvTtr~~~-~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 151 (1314)
.++-++|+|+++.... .+.+. +.....+.++|++|.+.. +..........+++++++.++..+.+...+.....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~- 211 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI- 211 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 3667999999987521 11110 011124567777776643 22211223467899999999999999887632111
Q ss_pred ccH-HHHHHHHHHHhCCcHHHHHHH
Q 042307 152 NDL-KAVAVDIAKACGGLPIAIVTI 175 (1314)
Q Consensus 152 ~~~-~~~~~~i~~~~~g~Plai~~~ 175 (1314)
.-. ++.+..|++.++|.+..+..+
T Consensus 212 ~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 212 QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 111 345778999999988654433
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.10 E-value=0.0029 Score=72.80 Aligned_cols=146 Identities=22% Similarity=0.263 Sum_probs=84.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.++...... .+.++.++-... ..+ ........+........+.+
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~--------------~~g-~~~~~~r~lf~~A~~~~p~I 111 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL--------------FVG-VGAARVRDLFAQAKAHAPCI 111 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC--------------CTT-HHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH--------------Hhc-ccHHHHHHHHHHHHhcCCCE
Confidence 6799999999999999999877521 344554432211 000 01223334444444467899
Q ss_pred EEEeCCCCcc----------------cccccCCC---C-CCCCceEEEEeccccccccc-c---CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL----------------DLENVGIP---F-GDRGCGVLMTARSQDVLSSK-M---DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~----------------~~~~~~~~---~-~~~~~~ilvTtr~~~~~~~~-~---~~~~~~~l~~l~~~ea 137 (1314)
|++|+++... .+..+... + ...+..||.||........+ . .....+.++..+.++.
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence 9999986531 01111100 0 12345677777766433211 1 2344788899999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLP 169 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 169 (1314)
.+++..++.......+. ....+++.+.|..
T Consensus 192 ~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 192 KKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 99998877432211111 1345788888865
No 214
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.88 E-value=0.0024 Score=74.47 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=67.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-----CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-----FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.|+|++|+|||++|+.++........ -..++.++++ ...... .......+.....+
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~~~~g~-----~e~~~~~~~~~~~~ 265 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------TKYRGE-----FEDRLKKVMDEIRQ 265 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHHHHHT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------ccccch-----HHHHHHHHHHHHHh
Confidence 579999999999999999998743211 1124445444 000000 11233455555555
Q ss_pred CCeEEEEEeCCCCcccccccCCCCCCCCceEEEEecccc------ccccccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 77 EKKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQD------VLSSKMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~------~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
..+.++++|. ..+....+.........++|.+|.... +......-...+.++..+.++..+++.....
T Consensus 266 ~~~~iLfiD~--~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 266 AGNIILFIDA--AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp CCCCEEEECC----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred cCCeEEEEeC--chhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 6788999992 222222221112233456666665543 1111112234689999999999999987663
No 215
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.86 E-value=0.0068 Score=70.51 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=84.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.+++... ...+.++++. +... ..+ ........+......+.+.+
T Consensus 241 vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~----------l~~~----~~g-~~~~~~~~~f~~A~~~~p~i 300 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE----------IMSK----LAG-ESESNLRKAFEEAEKNAPAI 300 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHH----------HHTS----CTT-HHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchH----------hhhh----hcc-hhHHHHHHHHHHHHhcCCcE
Confidence 68999999999999999988763 1245555422 1110 011 11122233333344467889
Q ss_pred EEEeCCCCcc----------------ccc-ccCCCCCCCCceEEEEeccccccccc----cCCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANL----------------DLE-NVGIPFGDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~----------------~~~-~~~~~~~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea~~l 140 (1314)
|+||+++... .+- .+.......+..||.||+........ ......+.++..+.++..++
T Consensus 301 LfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~I 380 (489)
T 3hu3_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (489)
T ss_dssp EEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred EEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHH
Confidence 9999984221 010 01000112345666677655322111 13344688999999999999
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHhCCc-HHHHHHHH
Q 042307 141 FKKLVGDKIENNDLKAVAVDIAKACGGL-PIAIVTIA 176 (1314)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 176 (1314)
+..++........ ....++++.+.|. +-.+..+.
T Consensus 381 L~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 381 LQIHTKNMKLADD--VDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp HHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHHH
Confidence 9988853221111 1134677777774 65555543
No 216
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.83 E-value=0.0015 Score=79.78 Aligned_cols=146 Identities=15% Similarity=0.207 Sum_probs=85.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||+||+.++++... ..++|+.++ +.. ... ......+..+.+...+..+++
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~----------l~s----k~~-gese~~lr~lF~~A~~~~PsI 300 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE----------IMS----KLA-GESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHH----------HHS----SCT-THHHHHHHHHHHHHTTSCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHH----------hhc----ccc-hHHHHHHHHHHHHHHHcCCeE
Confidence 689999999999999999987652 245565432 110 111 112233445555555578999
Q ss_pred EEEeCCCCccc-------------ccccCCC---C-CCCCceEEEEecccccccccc----CCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANLD-------------LENVGIP---F-GDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~~-------------~~~~~~~---~-~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea~~l 140 (1314)
|+||+++.... ..++... . ...+..||.||........++ .....++++..+.++..++
T Consensus 301 IfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp EEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred EEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHH
Confidence 99999875410 0111000 0 112345666776654332222 3456789999999999999
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHhCCcH
Q 042307 141 FKKLVGDKIENNDLKAVAVDIAKACGGLP 169 (1314)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 169 (1314)
+..+........+ ....+|++++.|.-
T Consensus 381 L~~~l~~~~~~~d--vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 381 LQIHTKNMKLADD--VDLEQVANETHGHV 407 (806)
T ss_dssp HHHTCSSSEECTT--CCHHHHHHHCCSCC
T ss_pred HHHHhcCCCCCcc--cCHHHHHHhcCCCC
Confidence 9988743211111 11446778887763
No 217
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.76 E-value=0.023 Score=64.61 Aligned_cols=122 Identities=11% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCCCc-ccccCccCcEEEcCCCcCCCc--cccCCCCCCCE
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEI 427 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~ 427 (1314)
...+|+.+.+... ...++..+|.++.+|+.+++..+ ++.+++ +|.++ +|..+.+..+ +..+ ..|.. .+|+.
T Consensus 44 ~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDD 117 (379)
T ss_dssp GGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSE
T ss_pred cccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccc
Confidence 3345666666432 45666667777777777777543 555533 45554 4555555432 2222 23333 36777
Q ss_pred EEccCccCcccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCC
Q 042307 428 LSFQGSNIEQLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDT 481 (1314)
Q Consensus 428 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 481 (1314)
+++..+ ++.+....-.-.+|....+.. .+..+....+....+++...+...
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred ccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence 776653 333333222223566655554 355555555666777777666544
No 218
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.72 E-value=0.0063 Score=64.49 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=57.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-----cChhHHH-HHHHHHH-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-----ESESGRA-RKLCERL- 74 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~~~~l- 74 (1314)
+-|.|++|+||||||.+++.....+..=..++||+..+..+.. .+++++...+. ....+.+ ..+.+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD 105 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH
Confidence 6799999999999999998876532112458999988877653 37888876432 1223333 3334444
Q ss_pred --hcCCeEEEEEeCCCCc
Q 042307 75 --RKEKKILVILDNIWAN 90 (1314)
Q Consensus 75 --~~~~~~LlvlD~v~~~ 90 (1314)
.+...-++|+|.|...
T Consensus 106 ~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp TCCTTCCEEEEEECSTTC
T ss_pred HhhccCceEEEEeccccc
Confidence 4467889999998655
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.66 E-value=0.00033 Score=67.02 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=28.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
.++|+|+.|+|||||++.++...... .+ .++|++..+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 37899999999999999999987642 11 267777654
No 220
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.64 E-value=0.012 Score=62.91 Aligned_cols=125 Identities=14% Similarity=0.259 Sum_probs=72.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|+|+|++|+||||||+.++..... ..++++..+-.+. ... .....+..+.+......+++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~--------------~~~-~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM--------------YVG-ESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS--------------TTH-HHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh--------------hhh-HHHHHHHHHHHHHHhcCCCe
Confidence 689999999999999999987652 3455554322110 000 00112333444333356889
Q ss_pred EEEeCCCCcccc-------------cccCCCC----CCCCceEEEEecccccccccc----CCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANLDL-------------ENVGIPF----GDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~~~-------------~~~~~~~----~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea~~l 140 (1314)
+++|+++..... ..+...+ .....-++.+|+...+...+. .....+.++..+.++..++
T Consensus 107 ~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~i 186 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186 (274)
T ss_dssp EEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHH
T ss_pred EeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHH
Confidence 999999753110 0000000 112334556677665544321 4466788999999999999
Q ss_pred HHHHhC
Q 042307 141 FKKLVG 146 (1314)
Q Consensus 141 ~~~~~~ 146 (1314)
+..+..
T Consensus 187 l~~~~~ 192 (274)
T 2x8a_A 187 LKTITK 192 (274)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 988773
No 221
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.62 E-value=0.0099 Score=63.18 Aligned_cols=145 Identities=21% Similarity=0.258 Sum_probs=77.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+||||||+.++.... ...+.++... +.... . ......+..+.+........+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~----------~~~~~-~----~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD----------FVEMF-V----GVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH----------HHHSC-T----THHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHH----------HHHHH-h----hHHHHHHHHHHHHHHhcCCeE
Confidence 68999999999999999998765 1244444221 11100 0 001122333444443345689
Q ss_pred EEEeCCCCcc------------c----ccccCCC----CCCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL------------D----LENVGIP----FGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~------------~----~~~~~~~----~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
+++|+++... . ...+... ......-++.||........+. .....+.++..+.++.
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 9999985321 0 1111000 0112223445666655433211 3445788899999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
.+++..++....... +.....+++.+.|.
T Consensus 192 ~~il~~~~~~~~~~~--~~~~~~la~~~~G~ 220 (254)
T 1ixz_A 192 EQILRIHARGKPLAE--DVDLALLAKRTPGF 220 (254)
T ss_dssp HHHHHHHHTTSCBCT--TCCHHHHHHTCTTC
T ss_pred HHHHHHHHcCCCCCc--ccCHHHHHHHcCCC
Confidence 999987764221111 11134677777775
No 222
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.57 E-value=0.004 Score=78.90 Aligned_cols=131 Identities=13% Similarity=0.190 Sum_probs=69.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-----CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-----FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.|+|++|+|||++|+.+++....... -..+++++++.-.. +... .......+..+......
T Consensus 194 vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~~~-~g~~~~~l~~~~~~~~~ 260 (854)
T 1qvr_A 194 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GAKY-RGEFEERLKAVIQEVVQ 260 (854)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHHHHT
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cCcc-chHHHHHHHHHHHHHHh
Confidence 579999999999999999998743210 12356665533210 0000 01123344555555554
Q ss_pred -CCeEEEEEeCCCCccc-------cccc--CCC-CCCCCceEEEEeccccc-----cccccCCCccEEecCCCHHHHHHH
Q 042307 77 -EKKILVILDNIWANLD-------LENV--GIP-FGDRGCGVLMTARSQDV-----LSSKMDCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 77 -~~~~LlvlD~v~~~~~-------~~~~--~~~-~~~~~~~ilvTtr~~~~-----~~~~~~~~~~~~l~~l~~~ea~~l 140 (1314)
+++.++++|+++.... ++.. ..+ ....+..+|.+|..... ..........+.+++++.++..++
T Consensus 261 ~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~i 340 (854)
T 1qvr_A 261 SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISI 340 (854)
T ss_dssp TCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHH
T ss_pred cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHH
Confidence 3689999999976521 1111 011 11234456665554321 121122334689999999999999
Q ss_pred HHHHh
Q 042307 141 FKKLV 145 (1314)
Q Consensus 141 ~~~~~ 145 (1314)
+....
T Consensus 341 L~~~~ 345 (854)
T 1qvr_A 341 LRGLK 345 (854)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 97544
No 223
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.54 E-value=0.021 Score=61.54 Aligned_cols=146 Identities=22% Similarity=0.260 Sum_probs=78.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+||||||+.++.... ...+.++... +.+.. . ......+..+.+......+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~----------~~~~~-~----~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD----------FVEMF-V----GVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH----------HHHST-T----THHHHHHHHHHHHHHTSCSEE
T ss_pred EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHH----------HHHHH-h----hHHHHHHHHHHHHHHhcCCcE
Confidence 68999999999999999998765 2244454321 11100 0 001122333444443345789
Q ss_pred EEEeCCCCcc------------c----ccccCCCC----CCCCceEEEEeccccccccc----cCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL------------D----LENVGIPF----GDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~------------~----~~~~~~~~----~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea 137 (1314)
+|+|+++... . +..+.... ......++.||....+...+ ......+.++..+.++.
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 9999985320 0 11110000 11223344556655543321 13455788999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLP 169 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 169 (1314)
.+++..++.......+ .....+++.+.|..
T Consensus 216 ~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 216 EQILRIHARGKPLAED--VDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred HHHHHHHHccCCCCcc--cCHHHHHHHcCCCC
Confidence 9999877743211111 11346777777754
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.49 E-value=0.0049 Score=68.06 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=26.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
|.|+|++|+|||++|+.+++.... ..+.++++.
T Consensus 53 vll~G~~GtGKT~la~~la~~l~~-----~~~~i~~~~ 85 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATK 85 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEEcchh
Confidence 689999999999999999988742 245566554
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.45 E-value=0.0087 Score=66.03 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=47.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.++...... -..++.++++....... ..+.++....... ......+...+......+
T Consensus 50 ~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~----~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~v 122 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA----VSRLIGAPPGYVG-YEEGGQLTEAVRRRPYSV 122 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH----HHHHHCCCTTSTT-TTTCCHHHHHHHHCSSEE
T ss_pred EEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc----HHHhcCCCCcccc-ccccchHHHHHHhCCCeE
Confidence 6899999999999999999987532 12356777765433221 1122232211110 010123344444456679
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
+++|+++..
T Consensus 123 l~lDEi~~l 131 (311)
T 4fcw_A 123 ILFDAIEKA 131 (311)
T ss_dssp EEEETGGGS
T ss_pred EEEeChhhc
Confidence 999999765
No 226
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.44 E-value=0.0075 Score=65.40 Aligned_cols=124 Identities=18% Similarity=0.072 Sum_probs=74.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc--ccCCCEEEEEEecc-CcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN--DKLFDEVVYADVSQ-TPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEK 78 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~--~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 78 (1314)
+.++|+.|+||||+|+.+++.... ..+.+ +.+++.+. ...+.++ +.+.+.+..... .++
T Consensus 21 ~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p~----------------~~~ 82 (305)
T 2gno_A 21 ILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSPE----------------LYT 82 (305)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCCS----------------SSS
T ss_pred EEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhccc----------------cCC
Confidence 568999999999999999986321 12233 45565543 3333333 223333321111 146
Q ss_pred eEEEEEeCCCCcc--cccccC--CCCCCCCceEEEEeccc-cccccccCCCccEEecCCCHHHHHHHHHHHh
Q 042307 79 KILVILDNIWANL--DLENVG--IPFGDRGCGVLMTARSQ-DVLSSKMDCQNNFLVGALNESEAWDLFKKLV 145 (1314)
Q Consensus 79 ~~LlvlD~v~~~~--~~~~~~--~~~~~~~~~ilvTtr~~-~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 145 (1314)
+-++|+|+++... ..+.+. +.-+.+.+.+|++|.+. .+.+ .+... .+++++++.++..+.+.+..
T Consensus 83 ~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~-tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 83 RKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP-TIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH-HHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH-HHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 7889999998652 222221 11123456666665443 4444 23334 89999999999999998887
No 227
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.40 E-value=0.00079 Score=72.56 Aligned_cols=125 Identities=24% Similarity=0.287 Sum_probs=66.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||++|+.++...... | +.++.+.-.+. ..+.. . .....+........+.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~--~---~~v~~~~~~~~---------~~~~~-----~-~~~~~~~~~a~~~~~~v 106 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVP--F---FSMGGSSFIEM---------FVGLG-----A-SRVRDLFETAKKQAPSI 106 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCC--C---CCCCSCTTTTS---------CSSSC-----S-SSSSTTHHHHHHSCSCE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC--E---EEechHHHHHh---------hcchH-----H-HHHHHHHHHHHhcCCeE
Confidence 4689999999999999999987532 2 12222211000 00000 0 01112222233346689
Q ss_pred EEEeCCCCcc-----------------cccccCCCCCC-----CCceEEEEecccccccc-cc---CCCccEEecCCCHH
Q 042307 82 VILDNIWANL-----------------DLENVGIPFGD-----RGCGVLMTARSQDVLSS-KM---DCQNNFLVGALNES 135 (1314)
Q Consensus 82 lvlD~v~~~~-----------------~~~~~~~~~~~-----~~~~ilvTtr~~~~~~~-~~---~~~~~~~l~~l~~~ 135 (1314)
+++|+++... .+..+...... ....||.||+....... .. .....+.++..+.+
T Consensus 107 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~ 186 (268)
T 2r62_A 107 IFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186 (268)
T ss_dssp EEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTT
T ss_pred EEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHH
Confidence 9999996431 11122111111 12456666665542211 11 23456788888999
Q ss_pred HHHHHHHHHhC
Q 042307 136 EAWDLFKKLVG 146 (1314)
Q Consensus 136 ea~~l~~~~~~ 146 (1314)
+..+++...+.
T Consensus 187 ~r~~il~~~~~ 197 (268)
T 2r62_A 187 GRVEILKVHIK 197 (268)
T ss_dssp THHHHHHHHTS
T ss_pred HHHHHHHHHHh
Confidence 99999988774
No 228
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.40 E-value=0.0025 Score=64.09 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
|.|+|++|+|||++|+.+++....
T Consensus 46 vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHHT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999999998753
No 229
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.34 E-value=0.0015 Score=62.35 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|+|.+|+|||++|+.+++...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSST
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987654
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.32 E-value=0.013 Score=73.45 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=68.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC-----CCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL-----FDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
|.++|++|+|||++|+.+++....... -..++.+++ +....+. ....+..+......
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------------g~~~~G~-~e~~l~~~~~~~~~ 265 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------------GTKYRGE-FEDRLKKVMDEIRQ 265 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHHHHHT
T ss_pred eEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------------cccccch-HHHHHHHHHHHHHh
Confidence 679999999999999999998642210 112333333 1111111 11234455555555
Q ss_pred CCeEEEEEeCCCCcccccccCCCCCCCCceEEEEecccc------ccccccCCCccEEecCCCHHHHHHHHHHHhC
Q 042307 77 EKKILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQD------VLSSKMDCQNNFLVGALNESEAWDLFKKLVG 146 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~------~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 146 (1314)
..+.++++|. ..+....+.........++|.||.... +......-...+.++..+.++..+++.....
T Consensus 266 ~~~~iLfiD~--~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 266 AGNIILFIDA--AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp CCCCEEEECC----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred cCCEEEEEcC--chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 6788999992 222222222122334567777776554 1111111235689999999999999987663
No 231
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.25 E-value=0.021 Score=60.18 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=53.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc----CCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc---------ccChhHH-
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK----LFDEVVYADVSQTPDIKKIQGQIADKLGLKFY---------EESESGR- 66 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~- 66 (1314)
+++|.|++|+||||+|..++....... .-..++|++.........+ ..+++.++.... .......
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDHQ 104 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHHH
Confidence 478999999999999999998643211 1357999988775444433 334555554321 1111111
Q ss_pred ---HHHHHHHHhcCCeEEEEEeCCCCc
Q 042307 67 ---ARKLCERLRKEKKILVILDNIWAN 90 (1314)
Q Consensus 67 ---~~~~~~~l~~~~~~LlvlD~v~~~ 90 (1314)
...+...+...+.-++|+|++...
T Consensus 105 ~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 105 TQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 222344444457788899987543
No 232
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.21 E-value=0.0047 Score=65.86 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=42.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+|||+||.+++.... ..+.|+++..... +... ..........+.+.+.+.+ +
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~-----------v~~~--~~~le~~l~~i~~~l~~~~--L 185 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEP-----------LSGY--NTDFNVFVDDIARAMLQHR--V 185 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCS-----------STTC--BCCHHHHHHHHHHHHHHCS--E
T ss_pred EEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhh-----------hhhh--hcCHHHHHHHHHHHHhhCC--E
Confidence 67999999999999999998721 1356777721111 0000 0122333445555565333 9
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
+|+|++...
T Consensus 186 LVIDsI~aL 194 (331)
T 2vhj_A 186 IVIDSLKNV 194 (331)
T ss_dssp EEEECCTTT
T ss_pred EEEeccccc
Confidence 999998754
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.18 E-value=0.024 Score=65.68 Aligned_cols=146 Identities=23% Similarity=0.262 Sum_probs=77.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+|||+||+.++..... ..+.++.+.-.. .... .....+..+.+......+.+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~--------------~~~g-~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE--------------MFVG-VGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS--------------SCTT-HHHHHHHHHTTTSSSSSSCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH--------------hhhh-hHHHHHHHHHHHHHhcCCCE
Confidence 689999999999999999987651 245565543111 0000 00111111221111124589
Q ss_pred EEEeCCCCccc----------------ccccCCCC----CCCCceEEEEecccccccccc----CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LENVGIPF----GDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~~~~~----~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea 137 (1314)
+++|+++.... +.++.... ......++.||+.......++ .....+.++..+.++.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 206 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHH
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHH
Confidence 99999864310 01110000 112334555666655433211 2345788999999999
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCcH
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGLP 169 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 169 (1314)
.+++..++.......+ .....|++.+.|..
T Consensus 207 ~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 207 EQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp HHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred HHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 9999877642211111 11346777777754
No 234
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.16 E-value=0.04 Score=61.01 Aligned_cols=47 Identities=19% Similarity=0.023 Sum_probs=35.0
Q ss_pred ccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCcHHHH
Q 042307 125 NNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKACGGLPIAI 172 (1314)
Q Consensus 125 ~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 172 (1314)
..+.+++.+.++-.+++.+.+.... .....+.+..|+++++|.|..+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHH
Confidence 3578999999999999988773211 1233567889999999999644
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.13 E-value=0.02 Score=59.25 Aligned_cols=84 Identities=25% Similarity=0.287 Sum_probs=48.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC-----------cccc-ChhHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK-----------FYEE-SESGRAR 68 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----------~~~~-~~~~~~~ 68 (1314)
+++|.|.+|+||||+|..++. .. -..++|++.....+...+. .+.+.++.. .... .......
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 478999999999999999998 22 2468999887655554433 233333321 1111 1111111
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc
Q 042307 69 KLCERLRKEKKILVILDNIWAN 90 (1314)
Q Consensus 69 ~~~~~l~~~~~~LlvlD~v~~~ 90 (1314)
...+.+.+.+.-++|+|.+...
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhhcCCCEEEEcCcHHH
Confidence 2222333235789999987654
No 236
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.08 E-value=0.018 Score=63.41 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=53.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-----cChhHH-HHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-----ESESGR-ARKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~-~~~~~~~l 74 (1314)
++.|.|++|+||||||.+++...... =..++|++.....+.. .+++++..... ....+. ...+....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 47899999999999999999886532 2348899887766643 56667655322 122222 22333333
Q ss_pred hcCCeEEEEEeCCCCc
Q 042307 75 RKEKKILVILDNIWAN 90 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~~ 90 (1314)
.....-++|+|.+...
T Consensus 136 ~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HTSCCSEEEEECTTTC
T ss_pred hhcCCCeEEehHhhhh
Confidence 3355668999997654
No 237
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.03 E-value=0.022 Score=71.41 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=73.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC----CCE-EEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL----FDE-VVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK 76 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 76 (1314)
+.|+|++|+|||++|+.++........ .+. ++.++++.- +...............+...+.+
T Consensus 210 vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------------~~~~~~~g~~e~~l~~~~~~~~~ 276 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LAGTKYRGDFEKRFKALLKQLEQ 276 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CCCCCSSCHHHHHHHHHHHHSS
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------hccccccchHHHHHHHHHHHHHh
Confidence 679999999999999999988743211 122 333332211 00011111223345566666665
Q ss_pred CCeEEEEEeCCCCcc--------c---ccccCCCCCCCCceEEEEecccccc------ccccCCCccEEecCCCHHHHHH
Q 042307 77 EKKILVILDNIWANL--------D---LENVGIPFGDRGCGVLMTARSQDVL------SSKMDCQNNFLVGALNESEAWD 139 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~~--------~---~~~~~~~~~~~~~~ilvTtr~~~~~------~~~~~~~~~~~l~~l~~~ea~~ 139 (1314)
.++.++++|+++... . ...+.......+.++|.+|...... .........+.++..+.++..+
T Consensus 277 ~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~ 356 (758)
T 1r6b_X 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQ 356 (758)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHH
T ss_pred cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHH
Confidence 567999999998551 1 1112112233455677666654311 1011122368899999999999
Q ss_pred HHHHHh
Q 042307 140 LFKKLV 145 (1314)
Q Consensus 140 l~~~~~ 145 (1314)
++....
T Consensus 357 il~~l~ 362 (758)
T 1r6b_X 357 IINGLK 362 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987655
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.91 E-value=0.028 Score=62.38 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=53.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc----CCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc---------cc-Chh--
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK----LFDEVVYADVSQTPDIKKIQGQIADKLGLKFY---------EE-SES-- 64 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~-~~~-- 64 (1314)
++.|.|.+|+||||+|.+++....... .-..++|++....++...+. .+++.++.... .. +..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e~~ 202 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSEHQ 202 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHHHH
Confidence 478999999999999999998743211 12469999988876655443 44556655421 00 111
Q ss_pred -HHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 042307 65 -GRARKLCERLRK--EKKILVILDNIWAN 90 (1314)
Q Consensus 65 -~~~~~~~~~l~~--~~~~LlvlD~v~~~ 90 (1314)
..+..+...+.+ .+.-++|+|.+...
T Consensus 203 ~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 203 MELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 112223334443 55668888886543
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.85 E-value=0.012 Score=69.84 Aligned_cols=132 Identities=21% Similarity=0.241 Sum_probs=62.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.|+|++|+||||+|+.++...... | ..++++...+............+.. ............ ...-+
T Consensus 111 vll~Gp~GtGKTtlar~ia~~l~~~--~---~~i~~~~~~~~~~~~g~~~~~ig~~------~~~~~~~~~~a~-~~~~v 178 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAKSLGRK--F---VRISLGGVRDESEIRGHRRTYVGAM------PGRIIQGMKKAG-KLNPV 178 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHTCE--E---EEECCCC--------------------------CHHHHHHTTC-SSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC--e---EEEEecccchhhhhhhHHHHHhccC------chHHHHHHHHhh-ccCCE
Confidence 7899999999999999999887522 2 2233333222221111111111110 011111111111 23348
Q ss_pred EEEeCCCCccc------ccccC---CC-----C---------CCCCceEEEEecccccccc-ccCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD------LENVG---IP-----F---------GDRGCGVLMTARSQDVLSS-KMDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~------~~~~~---~~-----~---------~~~~~~ilvTtr~~~~~~~-~~~~~~~~~l~~l~~~ea 137 (1314)
+++|+++.... ...+. -+ + ......+|.||+....... .......+.++.++.++-
T Consensus 179 l~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~ 258 (543)
T 3m6a_A 179 FLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEK 258 (543)
T ss_dssp EEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHH
T ss_pred EEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHH
Confidence 88999876521 01110 00 0 0023456666665442221 111224688899999888
Q ss_pred HHHHHHHh
Q 042307 138 WDLFKKLV 145 (1314)
Q Consensus 138 ~~l~~~~~ 145 (1314)
.+++..+.
T Consensus 259 ~~Il~~~l 266 (543)
T 3m6a_A 259 LEIVKDHL 266 (543)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 88887654
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.81 E-value=0.033 Score=61.29 Aligned_cols=89 Identities=24% Similarity=0.323 Sum_probs=55.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccC----CCEEEEEEeccCcCHHHHHHHHHHHhCCCcc---------ccChhH--
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKL----FDEVVYADVSQTPDIKKIQGQIADKLGLKFY---------EESESG-- 65 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~-- 65 (1314)
++.|.|.+|+||||+|.+++........ -..++|++....++...+. ++++.++.... .....+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 187 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTDHQ 187 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHHHH
Confidence 4789999999999999999987532210 2468999988876655543 44566665421 111111
Q ss_pred --HHHHHHHHHhc-CCeEEEEEeCCCCc
Q 042307 66 --RARKLCERLRK-EKKILVILDNIWAN 90 (1314)
Q Consensus 66 --~~~~~~~~l~~-~~~~LlvlD~v~~~ 90 (1314)
.+..+...+.+ .+.-++|+|.+...
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 22334444444 56778899987543
No 241
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.76 E-value=0.014 Score=60.99 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=51.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcc----cCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc---------cc-Chh--
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARND----KLFDEVVYADVSQTPDIKKIQGQIADKLGLKFY---------EE-SES-- 64 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~-~~~-- 64 (1314)
+++|.|++|+|||||++.++...... ..-..++|++......... ...+.+.++.... .. ...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNHQ 105 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChHHH
Confidence 47899999999999999998754421 1234588988665433322 3344444443311 00 111
Q ss_pred -HHHHHHHHHHh-----cCCeEEEEEeCCCCc
Q 042307 65 -GRARKLCERLR-----KEKKILVILDNIWAN 90 (1314)
Q Consensus 65 -~~~~~~~~~l~-----~~~~~LlvlD~v~~~ 90 (1314)
.....+...+. ..+.-++|+|.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 106 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 11233333333 457889999997543
No 242
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.71 E-value=0.00095 Score=63.56 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|.|+|.+|+|||++|+.+++..
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 6899999999999999987654
No 243
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.71 E-value=0.011 Score=73.88 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=68.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||++|+.+++..... -...+.++++.-...... . ...+..........+
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~---------------~----~~~l~~~~~~~~~~v 582 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHST---------------S----GGQLTEKVRRKPYSV 582 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCC---------------C-------CHHHHHHCSSSE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccc---------------c----cchhhHHHHhCCCeE
Confidence 7899999999999999999987422 233667777653211000 0 011112222244558
Q ss_pred EEEeCCCCcc--c-------ccccCC------CCCCCCceEEEEecccc-------------cccc-ccCCCccEEecCC
Q 042307 82 VILDNIWANL--D-------LENVGI------PFGDRGCGVLMTARSQD-------------VLSS-KMDCQNNFLVGAL 132 (1314)
Q Consensus 82 lvlD~v~~~~--~-------~~~~~~------~~~~~~~~ilvTtr~~~-------------~~~~-~~~~~~~~~l~~l 132 (1314)
++||+++... . ++.-.. .......+||+||.... ..+. ..+....+.+.++
T Consensus 583 l~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l 662 (758)
T 3pxi_A 583 VLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSL 662 (758)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--
T ss_pred EEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCC
Confidence 8999997651 1 111000 11124568888887311 1110 1223357889999
Q ss_pred CHHHHHHHHHHHh
Q 042307 133 NESEAWDLFKKLV 145 (1314)
Q Consensus 133 ~~~ea~~l~~~~~ 145 (1314)
+.++..+++....
T Consensus 663 ~~~~~~~i~~~~l 675 (758)
T 3pxi_A 663 EKKHLTEIVSLMS 675 (758)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999888877655
No 244
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.70 E-value=0.044 Score=62.32 Aligned_cols=123 Identities=21% Similarity=0.227 Sum_probs=73.7
Q ss_pred CCCCccEEEeCCCCCCcccCchhhhCCCcccEEEecCCcCCCC-CcccccCccCcEEEcCCCcCCCc--cccCCCCCCCE
Q 042307 351 ECPRLKFFHISPREGFIKIPDNFFTRLTELRVLDFTDMHLLSL-PSSLHLLVNLRTLCLDNGVLGDV--AVIGELKQLEI 427 (1314)
Q Consensus 351 ~~~~L~~L~l~~~~~~~~~~~~~f~~l~~L~~L~Ls~n~~~~l-p~~~~~l~~L~~L~L~~~~~~~~--~~~~~L~~L~~ 427 (1314)
.+.+|+.+.+..+ ...+....|.++..|+.+.+..+ ++.+ ...|.++.+|+.+.+..+ +..+ ..|.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 5556666666543 24455556666777777777654 4444 334666666777666543 2222 45666677777
Q ss_pred EEccCccCcccc-hhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcC
Q 042307 428 LSFQGSNIEQLP-REIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLG 479 (1314)
Q Consensus 428 L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~ 479 (1314)
+++.++.++.++ ..|.++.+|+.+.+.. .++.+....+.++.+|+.+.+.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 777666666664 3466667777777654 3566666556666666666553
No 245
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.68 E-value=0.034 Score=61.33 Aligned_cols=89 Identities=22% Similarity=0.307 Sum_probs=54.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc---------CC-----CEEEEEEeccCcCHHHHHHHHHHHhCCCcc-------
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK---------LF-----DEVVYADVSQTPDIKKIQGQIADKLGLKFY------- 59 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------- 59 (1314)
++.|.|.+|+||||+|.+++....... .. ..++|++....++..++. ++++.++....
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~ 178 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDNTF 178 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcCEE
Confidence 478999999999999999997642111 11 468999988876655544 34566655421
Q ss_pred --ccChhH----HHHHHHHHHhc-CCeEEEEEeCCCCc
Q 042307 60 --EESESG----RARKLCERLRK-EKKILVILDNIWAN 90 (1314)
Q Consensus 60 --~~~~~~----~~~~~~~~l~~-~~~~LlvlD~v~~~ 90 (1314)
.....+ .+..+...+.+ .+.-++|+|.+...
T Consensus 179 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 179 VARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp EEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 111111 22334444444 45678889987543
No 246
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.68 E-value=0.03 Score=62.93 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=52.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc----CCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc---------ccChh---
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK----LFDEVVYADVSQTPDIKKIQGQIADKLGLKFY---------EESES--- 64 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~--- 64 (1314)
++.|.|++|+|||||+..++-...... .-..++|++......... .+.+++.++.... .....
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~~~~~ 258 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYNADHQ 258 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCChHHH
Confidence 478999999999999998865433211 234699999876555443 3446666665421 01111
Q ss_pred -HHHHHHHHHHhcCCeEEEEEeCCC
Q 042307 65 -GRARKLCERLRKEKKILVILDNIW 88 (1314)
Q Consensus 65 -~~~~~~~~~l~~~~~~LlvlD~v~ 88 (1314)
..+..+...+...+.-++|+|.+.
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHhcCCceEEecchh
Confidence 122333344444567888889854
No 247
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.56 E-value=0.036 Score=61.49 Aligned_cols=83 Identities=24% Similarity=0.278 Sum_probs=53.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-----cChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-----ESESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l~ 75 (1314)
+|.|.|.+|+||||+|.+++...... -..++|++.....+.. .++.++..... ....+.+....+.+.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 47889999999999999998876532 2359999998766543 25566654221 122233333334443
Q ss_pred -cCCeEEEEEeCCCCc
Q 042307 76 -KEKKILVILDNIWAN 90 (1314)
Q Consensus 76 -~~~~~LlvlD~v~~~ 90 (1314)
....-+||+|.+...
T Consensus 149 ~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAAL 164 (366)
T ss_dssp TTTCCSEEEEECTTTC
T ss_pred hcCCCCEEEEeChHHh
Confidence 345668999997644
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.55 E-value=0.034 Score=61.55 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=53.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-----cChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-----ESESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l~ 75 (1314)
++.|.|.+|+||||||.+++...... =..++|++.....+.. .++.++..... ....+....+.+.+.
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 47899999999999999998776532 2358999988765542 35666654321 122233333444343
Q ss_pred -cCCeEEEEEeCCCCc
Q 042307 76 -KEKKILVILDNIWAN 90 (1314)
Q Consensus 76 -~~~~~LlvlD~v~~~ 90 (1314)
+.+.-++|+|.+...
T Consensus 136 ~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 136 RSGALDIIVIDSVAAL 151 (349)
T ss_dssp TTTCCSEEEEECGGGC
T ss_pred hcCCCCEEEEcChHhh
Confidence 345679999997543
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.54 E-value=0.0069 Score=74.01 Aligned_cols=145 Identities=14% Similarity=0.264 Sum_probs=70.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||.+|+.+++..... ++.++. . +++. ...+. ....+..+....++..+++
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~----~----~l~s----~~vGe-se~~vr~lF~~Ar~~~P~I 573 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQAN-------FISIKG----P----ELLT----MWFGE-SEANVREIFDKARQAAPCV 573 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH----H----HHHT----TTCSS-CHHHHHHHHHHHHTTCSEE
T ss_pred EEEecCCCCCchHHHHHHHHHhCCc-------eEEecc----c----hhhc----cccch-HHHHHHHHHHHHHHcCCce
Confidence 5789999999999999999987621 233321 1 1111 11122 2345666777777678999
Q ss_pred EEEeCCCCccc----------------ccccCCC----CCCCCceEEEEeccccccccc----cCCCccEEecCCCHHHH
Q 042307 82 VILDNIWANLD----------------LENVGIP----FGDRGCGVLMTARSQDVLSSK----MDCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~~----------------~~~~~~~----~~~~~~~ilvTtr~~~~~~~~----~~~~~~~~l~~l~~~ea 137 (1314)
|+||+++.... ..++... ....+.-||-||...+....+ .+....+.++.-+.++.
T Consensus 574 ifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R 653 (806)
T 3cf2_A 574 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp EECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHH
T ss_pred eechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHH
Confidence 99999875410 0111000 011233344456555433221 14466788888888888
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHhCCc
Q 042307 138 WDLFKKLVGDKIENNDLKAVAVDIAKACGGL 168 (1314)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 168 (1314)
.++|+.+........+. -...+++.+.|.
T Consensus 654 ~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 654 VAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp HHTTTTTSSCC--CCC---------------
T ss_pred HHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 88888877432221111 134566666554
No 250
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.46 E-value=0.037 Score=61.26 Aligned_cols=82 Identities=23% Similarity=0.391 Sum_probs=52.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-----cChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-----ESESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l~ 75 (1314)
++.|.|.+|+||||+|.+++...... -..++|++.....+.. .++.++..... ....+....+.+.+.
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876533 2359999998766633 25566654321 112233333333332
Q ss_pred -cCCeEEEEEeCCCC
Q 042307 76 -KEKKILVILDNIWA 89 (1314)
Q Consensus 76 -~~~~~LlvlD~v~~ 89 (1314)
+...-++|+|.+..
T Consensus 138 ~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 138 RSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHTCCSEEEEECGGG
T ss_pred hccCCCEEEEcCHHH
Confidence 34566899999653
No 251
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.28 E-value=0.014 Score=63.37 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=47.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC----ccccChhHHH------HHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK----FYEESESGRA------RKL 70 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~----~~~~~~~~~~------~~~ 70 (1314)
++|+|.+|+|||||++.+++....++.--.++++-+++.. .+.++ .+.+... ..+.....+. -.+
T Consensus 177 ~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~----~~~~~~~vV~atadep~~~r~~~a~~alt~ 252 (422)
T 3ice_A 177 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM----QRLVKGEVVASTFDEPASRHVQVAEMVIEK 252 (422)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHH----HTTCSSEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHH----HHHhCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999998876532211135567777653 23332 2222111 1111111111 112
Q ss_pred HHHHh-cCCeEEEEEeCCCCc
Q 042307 71 CERLR-KEKKILVILDNIWAN 90 (1314)
Q Consensus 71 ~~~l~-~~~~~LlvlD~v~~~ 90 (1314)
-++++ +++++|+++||+...
T Consensus 253 AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 253 AKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHhcCCCEEEEEeCchHH
Confidence 22333 489999999997543
No 252
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.25 E-value=0.016 Score=63.04 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=27.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh-cccCCCEEEEEEec
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR-NDKLFDEVVYADVS 38 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~-~~~~f~~~~wv~~~ 38 (1314)
|.|+|++|+|||+||..+++... ... ..++++++.
T Consensus 155 lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~~~ 190 (308)
T 2qgz_A 155 LYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLHFP 190 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEHH
Confidence 68999999999999999999876 332 246667653
No 253
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.19 E-value=0.068 Score=62.09 Aligned_cols=47 Identities=6% Similarity=-0.202 Sum_probs=31.9
Q ss_pred ccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHh-CCcHHHH
Q 042307 125 NNFLVGALNESEAWDLFKKLVGDKIENNDLKAVAVDIAKAC-GGLPIAI 172 (1314)
Q Consensus 125 ~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai 172 (1314)
..+.+++++.++..+++..++.... ..-.++.+..|++.+ +|.|...
T Consensus 359 ~~~~~~~~~~~e~~~iL~~~~~~~~-~~~~~~~~~~i~~~a~~g~~r~a 406 (456)
T 2c9o_A 359 MIIRTMLYTPQEMKQIIKIRAQTEG-INISEEALNHLGEIGTKTTLRYS 406 (456)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHHHSCHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHccCCCHHHH
Confidence 4578999999999999987762111 112245667888888 7777543
No 254
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.16 E-value=0.01 Score=63.07 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=26.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh-cccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR-NDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~-~~~~f~~~~wv~~~~ 39 (1314)
+++|.|+.|+|||||++.++.... .. -..++|+....
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~ 69 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEE 69 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccC
Confidence 479999999999999999884322 11 23466666543
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.89 E-value=0.059 Score=56.25 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=28.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
+++|.|++|+||||+++.++...... -..++|+....
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~ 61 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE 61 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc
Confidence 47899999999999999999766532 23477877544
No 256
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.89 E-value=0.096 Score=56.88 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
|.|+|.+|+|||++|+.+++...... ...+.++++..
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~~~~~--~~~v~v~~~~~ 64 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACSARSD--RPLVTLNCAAL 64 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHSSCSS--SCCCEEECSSC
T ss_pred EEEECCCCchHHHHHHHHHHhCcccC--CCeEEEeCCCC
Confidence 78999999999999999998754221 12345666543
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.80 E-value=0.054 Score=58.33 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=46.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC-cCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT-PDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
+|+|+|.+|+||||++..++.....+.. ..+..++.... ....+.+....+..+...........+......+ ...
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~~~ 183 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--SEY 183 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--GGS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--cCC
Confidence 5889999999999999999988763211 14666665432 2333334444444444432222222232222233 344
Q ss_pred EEEEEeC
Q 042307 80 ILVILDN 86 (1314)
Q Consensus 80 ~LlvlD~ 86 (1314)
-++|+|-
T Consensus 184 dlvIiDT 190 (296)
T 2px0_A 184 DHVFVDT 190 (296)
T ss_dssp SEEEEEC
T ss_pred CEEEEeC
Confidence 5788884
No 258
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.75 E-value=0.074 Score=58.95 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=51.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCC----CEEEEEEeccCcCHHHHHHHHHHHhCCCcc---------cc-Ch---
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLF----DEVVYADVSQTPDIKKIQGQIADKLGLKFY---------EE-SE--- 63 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~-~~--- 63 (1314)
++.|.|+.|+|||||+..++......... ..++|++......... ...+++.++.... .. ..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~ 211 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNHQ 211 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChHHH
Confidence 47899999999999999999876311111 3469998766543333 3334554443211 00 01
Q ss_pred hHHHHHHHHHHhc-----CCeEEEEEeCCCCc
Q 042307 64 SGRARKLCERLRK-----EKKILVILDNIWAN 90 (1314)
Q Consensus 64 ~~~~~~~~~~l~~-----~~~~LlvlD~v~~~ 90 (1314)
...+..+...+.+ .+.-++|+|.+...
T Consensus 212 ~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 212 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1112223333332 46889999998655
No 259
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.71 E-value=0.021 Score=71.72 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=45.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
+.++|++|+|||++|+.+++... ...+.+++++...... +.+.+|.. ++-........+...+......+
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~----~~~l~g~~-~g~~g~~~~~~l~~~~~~~~~~v 560 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT----VSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAV 560 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----CSSSCCCC-SCSHHHHHTTHHHHHHHHCSSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----HhhhcCCC-CCCcCccccchHHHHHHhCCCcE
Confidence 67999999999999999998873 2356677665322100 00111111 11001111122344444466789
Q ss_pred EEEeCCCCc
Q 042307 82 VILDNIWAN 90 (1314)
Q Consensus 82 lvlD~v~~~ 90 (1314)
++||+++..
T Consensus 561 l~lDEi~~~ 569 (758)
T 1r6b_X 561 LLLDEIEKA 569 (758)
T ss_dssp EEEETGGGS
T ss_pred EEEeCcccc
Confidence 999999865
No 260
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.60 E-value=0.14 Score=57.70 Aligned_cols=87 Identities=24% Similarity=0.417 Sum_probs=56.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------------ccccChhHH-
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------------FYEESESGR- 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------------~~~~~~~~~- 66 (1314)
++|.|.+|+|||+|+.++++.... .+-+.++++-+++.. .+.++.+.+.+.=... ..+.....+
T Consensus 156 ~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~ 234 (482)
T 2ck3_D 156 IGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARA 234 (482)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHH
T ss_pred eeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHH
Confidence 589999999999999999988642 234667888887754 4666677776553221 011111111
Q ss_pred -----HHHHHHHHhc--CCeEEEEEeCCCC
Q 042307 67 -----ARKLCERLRK--EKKILVILDNIWA 89 (1314)
Q Consensus 67 -----~~~~~~~l~~--~~~~LlvlD~v~~ 89 (1314)
.-.+-++++. ++++|+++||+..
T Consensus 235 ~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 235 RVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1234444443 7999999999753
No 261
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.52 E-value=0.11 Score=58.93 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=57.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC--------------ccccChhHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK--------------FYEESESGR 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~~~~~~ 66 (1314)
++|.|.+|+|||+|+.++++.... .+-+.++++-+++.. .+.++++.+.+.=... ..+.....+
T Consensus 168 ~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R 246 (498)
T 1fx0_B 168 IGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGAR 246 (498)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHH
T ss_pred EEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHH
Confidence 689999999999999999998652 234678888887755 5667777776542221 011111111
Q ss_pred ------HHHHHHHHhc--CCeEEEEEeCCCC
Q 042307 67 ------ARKLCERLRK--EKKILVILDNIWA 89 (1314)
Q Consensus 67 ------~~~~~~~l~~--~~~~LlvlD~v~~ 89 (1314)
.-.+-++++. ++++|+++||+..
T Consensus 247 ~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 247 MRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp TTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 2234455554 7899999999753
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.25 E-value=0.02 Score=56.80 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.|.|++|+||||+|+.++....
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 378999999999999999998764
No 263
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.25 E-value=0.08 Score=59.87 Aligned_cols=87 Identities=25% Similarity=0.413 Sum_probs=50.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCC-------CccccChhHHH------
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGL-------KFYEESESGRA------ 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~------ 67 (1314)
++|+|.+|+||||||..++.....+ .-+.++++-+++.. ...++++.+.+.-.. ....++...+.
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ 232 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTG 232 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHH
Confidence 5899999999999999999876633 22345666666544 344555545432100 01111111111
Q ss_pred HHHHHHHh--cCCeEEEEEeCCCC
Q 042307 68 RKLCERLR--KEKKILVILDNIWA 89 (1314)
Q Consensus 68 ~~~~~~l~--~~~~~LlvlD~v~~ 89 (1314)
..+-++++ +++++|+++||+..
T Consensus 233 ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 233 LTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHhcCCcEEEEeccHHH
Confidence 13334444 38999999999843
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.24 E-value=0.082 Score=65.92 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=69.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.|+|++|+||||+|+.++..... ..+.++...- ..... ......+..+.+......+.+
T Consensus 241 vLL~Gp~GtGKTtLarala~~l~~-----~~i~v~~~~l--------------~~~~~-g~~~~~l~~vf~~a~~~~p~i 300 (806)
T 1ypw_A 241 ILLYGPPGTGKTLIARAVANETGA-----FFFLINGPEI--------------MSKLA-GESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp EEECSCTTSSHHHHHHHHHHTTTC-----EEEEEEHHHH--------------SSSST-THHHHHHHHHHHHHHHHCSEE
T ss_pred EEEECcCCCCHHHHHHHHHHHcCC-----cEEEEEchHh--------------hhhhh-hhHHHHHHHHHHHHHhcCCcE
Confidence 789999999999999999877541 1345553211 00111 011223334444444456789
Q ss_pred EEEeCCCCccc-------------cccc----CCCCCCCCceEEEEecccccccccc----CCCccEEecCCCHHHHHHH
Q 042307 82 VILDNIWANLD-------------LENV----GIPFGDRGCGVLMTARSQDVLSSKM----DCQNNFLVGALNESEAWDL 140 (1314)
Q Consensus 82 lvlD~v~~~~~-------------~~~~----~~~~~~~~~~ilvTtr~~~~~~~~~----~~~~~~~l~~l~~~ea~~l 140 (1314)
+++|+++.... ...+ .......+..++.||.........+ .....+.+...+.++..++
T Consensus 301 l~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~i 380 (806)
T 1ypw_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp EEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHH
T ss_pred EEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHH
Confidence 99999853310 0011 0111123445666666543222111 2234567888899999999
Q ss_pred HHHHhC
Q 042307 141 FKKLVG 146 (1314)
Q Consensus 141 ~~~~~~ 146 (1314)
+..++.
T Consensus 381 l~~~~~ 386 (806)
T 1ypw_A 381 LQIHTK 386 (806)
T ss_dssp HHHTTT
T ss_pred HHHHHh
Confidence 988774
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.24 E-value=0.18 Score=55.11 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=36.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADK 53 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 53 (1314)
++.|.|.+|+||||+|.+++.....+. ..++|++.. .+..++...+...
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 478999999999999999998766432 568888866 3455555555443
No 266
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.11 E-value=0.11 Score=54.71 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=29.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
++.|.|.+|+||||+|.+++...... -..++|++....
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~ 62 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH 62 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 47899999999999999988776432 235888886553
No 267
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.02 E-value=0.066 Score=49.38 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=44.3
Q ss_pred CEEEccCccCc--ccchhhcCCCCCCEEeeccCCCCCccchhhhcCCCCCcEEEcCCCccc
Q 042307 426 EILSFQGSNIE--QLPREIGQLTRLRSLNLSSCYQLKAISSNVISNLSQLEELYLGDTFIQ 484 (1314)
Q Consensus 426 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (1314)
.+++.++++++ .+|..+ -.+|++|+|++| .++.++...+..+.+|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 36778888887 888643 246889999987 788888887888889999999888653
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.00 E-value=0.025 Score=55.77 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998864
No 269
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.94 E-value=0.072 Score=49.10 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=13.4
Q ss_pred ccEEEecCCcCCCCCc-ccccCccCcEEEcCCC
Q 042307 380 LRVLDFTDMHLLSLPS-SLHLLVNLRTLCLDNG 411 (1314)
Q Consensus 380 L~~L~Ls~n~~~~lp~-~~~~l~~L~~L~L~~~ 411 (1314)
|++|+|++|.|+.+|. .|..+++|++|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444444444444432 2333444444444433
No 270
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.92 E-value=0.046 Score=54.04 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCCcccEEEecCC-cCC-----CCCcccccCccCcEEEcCCCcCCCc------cccCCCCCCCEEEccCccCc-----cc
Q 042307 376 RLTELRVLDFTDM-HLL-----SLPSSLHLLVNLRTLCLDNGVLGDV------AVIGELKQLEILSFQGSNIE-----QL 438 (1314)
Q Consensus 376 ~l~~L~~L~Ls~n-~~~-----~lp~~~~~l~~L~~L~L~~~~~~~~------~~~~~L~~L~~L~L~~~~i~-----~l 438 (1314)
.-..|+.|+|+++ .|. .+-+.+..-+.|+.|+|++|.+.+. ..+..-+.|++|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445555555553 443 1223344445566666666665432 22334456666666666665 12
Q ss_pred chhhcCCCCCCEEeeccC
Q 042307 439 PREIGQLTRLRSLNLSSC 456 (1314)
Q Consensus 439 p~~i~~L~~L~~L~L~~~ 456 (1314)
-..+..=+.|++|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 223333445666666643
No 271
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.86 E-value=0.062 Score=67.99 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=27.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
|.|+|++|+|||++|+.+++...... ...+.++++..
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~ 627 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEY 627 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhc
Confidence 67999999999999999998875321 22556766643
No 272
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.75 E-value=0.05 Score=54.89 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.|.|++|+||+|.|+.++.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999999998764
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.70 E-value=0.11 Score=55.95 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=48.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCCcccc---ChhHH--HHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLKFYEE---SESGR--ARKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~---~~~~~--~~~~~~~l 74 (1314)
+|+|+|++|+||||++..++...... -..+.+++..... ...+-+...++..+...... .+... ...+.+.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~ 183 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 183 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH
Confidence 58899999999999999999887643 2246666654321 11122334555555443211 11111 12344444
Q ss_pred hcCCeEEEEEeCCC
Q 042307 75 RKEKKILVILDNIW 88 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~ 88 (1314)
. ...-++|+|-..
T Consensus 184 ~-~~~dvvIiDtpg 196 (306)
T 1vma_A 184 A-RNKDVVIIDTAG 196 (306)
T ss_dssp H-TTCSEEEEEECC
T ss_pred h-cCCCEEEEECCC
Confidence 4 444578888654
No 274
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.69 E-value=0.023 Score=57.95 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=61.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhc----
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRK---- 76 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~---- 76 (1314)
++.++|..|+||||++.+++.+..... ..++.+...... + ...++++.++.......- .....+...+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHSTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHHhhC
Confidence 367899999999999999999887432 235555433322 1 223455666654332111 111234444442
Q ss_pred CCeEEEEEeCCCCc--ccccccCCCCCCCCceEEEEeccccc
Q 042307 77 EKKILVILDNIWAN--LDLENVGIPFGDRGCGVLMTARSQDV 116 (1314)
Q Consensus 77 ~~~~LlvlD~v~~~--~~~~~~~~~~~~~~~~ilvTtr~~~~ 116 (1314)
++.-++|+|.+... +.++.+.. ....|..|++|-+..+.
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~-L~~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANI-LAENGFVVIISGLDKNF 128 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHH-HHHTTCEEEEECCSBCT
T ss_pred CCCCEEEEecCccCcHHHHHHHHH-HHhCCCeEEEEeccccc
Confidence 34569999998643 22222211 11236789999887653
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.68 E-value=0.035 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|+.|+||||+++.++....
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988764
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.53 E-value=0.039 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 277
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.49 E-value=0.15 Score=54.79 Aligned_cols=86 Identities=22% Similarity=0.263 Sum_probs=50.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcC-HHHHHHHHHHHhCCCcccc----ChhHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPD-IKKIQGQIADKLGLKFYEE----SESGRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~ 75 (1314)
+|+++|.+|+||||++..++...... =..+.+++...... ..+.+....+..+...... +...........+.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999887643 23477777654322 2233344555555543221 22222334444443
Q ss_pred cCCeEEEEEeCCC
Q 042307 76 KEKKILVILDNIW 88 (1314)
Q Consensus 76 ~~~~~LlvlD~v~ 88 (1314)
....-++|+|-..
T Consensus 178 ~~~~D~ViIDTpg 190 (297)
T 1j8m_F 178 SEKMEIIIVDTAG 190 (297)
T ss_dssp HTTCSEEEEECCC
T ss_pred hCCCCEEEEeCCC
Confidence 2333477888643
No 278
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.43 E-value=0.4 Score=53.22 Aligned_cols=151 Identities=9% Similarity=-0.074 Sum_probs=88.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
..++|+.|.||++.|..+....... .|+....+.+....+++++...+.. ..+ -+++-+
T Consensus 21 yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~pl-f~~~kv 79 (343)
T 1jr3_D 21 YLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSL-FASRQT 79 (343)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------HHH-CCSCEE
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------cCC-ccCCeE
Confidence 5789999999999999998876532 2432222223333444443322110 011 156788
Q ss_pred EEEeCCCC-c--ccccccC--CCCCCCCceEEEEecc-------ccccccccCCCccEEecCCCHHHHHHHHHHHhCCCC
Q 042307 82 VILDNIWA-N--LDLENVG--IPFGDRGCGVLMTARS-------QDVLSSKMDCQNNFLVGALNESEAWDLFKKLVGDKI 149 (1314)
Q Consensus 82 lvlD~v~~-~--~~~~~~~--~~~~~~~~~ilvTtr~-------~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 149 (1314)
+|+|+++. . +.++.+. ..-+.+++.+|++|.. ..+..........++..+++.++..+.+.+.+....
T Consensus 80 vii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g 159 (343)
T 1jr3_D 80 LLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLN 159 (343)
T ss_dssp EEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 89999876 3 2333221 1112346676666543 123321233456789999999999988888773211
Q ss_pred CCccHHHHHHHHHHHhCCcHHHHHH
Q 042307 150 ENNDLKAVAVDIAKACGGLPIAIVT 174 (1314)
Q Consensus 150 ~~~~~~~~~~~i~~~~~g~Plai~~ 174 (1314)
. .-..+.+..+++.++|...++..
T Consensus 160 ~-~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 160 L-ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp C-EECHHHHHHHHHSSTTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHhchHHHHHHH
Confidence 1 22356788999999998876554
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.42 E-value=0.033 Score=55.21 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=18.0
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEV 19 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~ 19 (1314)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.37 E-value=0.037 Score=55.99 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998874
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.25 E-value=0.041 Score=54.97 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|+.|+||||+|+.++....
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 282
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.24 E-value=0.03 Score=60.74 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=28.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCC-EEEEEEeccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFD-EVVYADVSQT 40 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~-~~~wv~~~~~ 40 (1314)
++|.|.+|+|||+|+.++++....+ +-+ .++++-+++.
T Consensus 178 ~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER 216 (427)
T 3l0o_A 178 GMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDER 216 (427)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCC
T ss_pred EEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccC
Confidence 5899999999999999999876532 122 3566766654
No 283
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.20 E-value=0.077 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
||.|.|++|+||+|.|+.+++++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998864
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.19 E-value=0.049 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|+|.|++|+||||+|+.++....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998764
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.19 E-value=0.05 Score=54.01 Aligned_cols=24 Identities=46% Similarity=0.508 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.|.|++|+||||+|+.++....
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.13 E-value=0.039 Score=54.83 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.6
Q ss_pred CEEEEcCCCchHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVAR 21 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~ 21 (1314)
+|.|.|++|+||||+|+.++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 287
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.12 E-value=0.17 Score=57.06 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=26.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADV 37 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~ 37 (1314)
||.++|.+|+||||++..++.....+.+ .+..+++
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~--kVllv~~ 136 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGY--KVGVVCS 136 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC--CEEEEEC
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCC--eEEEEeC
Confidence 5899999999999999999988874322 3555554
No 288
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.09 E-value=0.051 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 289
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.04 E-value=0.23 Score=53.42 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=48.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCH-HHHHHHHHHHhCCCccc---cChh-HHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDI-KKIQGQIADKLGLKFYE---ESES-GRARKLCERLR 75 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~~~---~~~~-~~~~~~~~~l~ 75 (1314)
+|+|+|.+|+||||++..++...... -..+.+++....... ...+..+.+..+..... ..+. +........+.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999887643 234677765433221 12233445555554321 1122 22233333332
Q ss_pred cCCeEEEEEeCC
Q 042307 76 KEKKILVILDNI 87 (1314)
Q Consensus 76 ~~~~~LlvlD~v 87 (1314)
....-++|+|--
T Consensus 178 ~~~~D~viiDtp 189 (295)
T 1ls1_A 178 LEARDLILVDTA 189 (295)
T ss_dssp HHTCCEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 234457888975
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.94 E-value=0.048 Score=55.23 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998875
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.92 E-value=0.047 Score=54.12 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|++|+|||||++.+.....
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 479999999999999999988754
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.88 E-value=0.055 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|+|.|++|+|||||++++..+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 489999999999999999988764
No 293
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.88 E-value=0.055 Score=55.00 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+++.++....
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCc
Confidence 589999999999999999988764
No 294
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.86 E-value=0.051 Score=53.15 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998865
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.86 E-value=0.049 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=22.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.+++...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999876
No 296
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.85 E-value=0.049 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998775
No 297
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.75 E-value=0.062 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 298
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.74 E-value=0.045 Score=54.99 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~ 22 (1314)
+|+|.|++|+||||+++.++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999865
No 299
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.71 E-value=0.19 Score=56.71 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=27.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS 38 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~ 38 (1314)
||+++|.+|+||||++..++.....+. ..+..+++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D 134 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAAD 134 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecC
Confidence 578999999999999999998887432 235555544
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.71 E-value=0.052 Score=57.21 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999998764
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.66 E-value=0.054 Score=54.48 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.|.|++|+||||+|+.++....
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 302
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.64 E-value=0.055 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|+|+.|+||||+|+.+.+..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999998764
No 303
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.58 E-value=0.31 Score=53.09 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=34.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIAD 52 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 52 (1314)
+|.|.|.+|+||||+|..++...... =..|+|++.. .+..++...++.
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHH
Confidence 47899999999999999999887642 2357888764 345555555443
No 304
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.51 E-value=0.19 Score=54.38 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=27.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
+|+|.|+.|+||||+|+.+.........-..+..+....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 589999999999999999987765211112355566544
No 305
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.48 E-value=0.058 Score=53.67 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=20.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~ 22 (1314)
+|+|+|+.|+||||+|+.++..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999876
No 306
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.47 E-value=0.059 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=21.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|+.|+||||+|+.++...
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48899999999999999998776
No 307
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.39 E-value=0.2 Score=67.03 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=54.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-----cChhHH-HHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-----ESESGR-ARKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~-~~~~~~~l 74 (1314)
+|.|+|++|+|||+||.+++...... =..++|+++.+..+... ++.++..... ....+. .+.+.+..
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 37899999999999999998876532 23588999888766555 5566633211 112223 33333344
Q ss_pred hcCCeEEEEEeCCC
Q 042307 75 RKEKKILVILDNIW 88 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~ 88 (1314)
++.+..++|+|.+.
T Consensus 1502 r~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHTCCSEEEESCGG
T ss_pred hcCCCCEEEEcChh
Confidence 44678899999985
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.35 E-value=0.062 Score=53.00 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|+.|+||||+|+.++...
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 47999999999999999998765
No 309
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.34 E-value=0.1 Score=51.66 Aligned_cols=104 Identities=11% Similarity=0.026 Sum_probs=64.8
Q ss_pred CCccEEEeCCC-CCCcc---cCchhhhCCCcccEEEecCCcCC-----CCCcccccCccCcEEEcCCCcCCCc------c
Q 042307 353 PRLKFFHISPR-EGFIK---IPDNFFTRLTELRVLDFTDMHLL-----SLPSSLHLLVNLRTLCLDNGVLGDV------A 417 (1314)
Q Consensus 353 ~~L~~L~l~~~-~~~~~---~~~~~f~~l~~L~~L~Ls~n~~~-----~lp~~~~~l~~L~~L~L~~~~~~~~------~ 417 (1314)
+.|+.|+|+++ .+... .-...+..-+.|+.|+|++|.+. .+-..+..-+.|++|+|++|.+..- .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45666777654 32211 01123456678888888888876 3444555667899999999988752 4
Q ss_pred ccCCCCCCCEEEccCccC---c-----ccchhhcCCCCCCEEeeccC
Q 042307 418 VIGELKQLEILSFQGSNI---E-----QLPREIGQLTRLRSLNLSSC 456 (1314)
Q Consensus 418 ~~~~L~~L~~L~L~~~~i---~-----~lp~~i~~L~~L~~L~L~~~ 456 (1314)
.+..-+.|++|+|+++.. . .+-..+..=+.|+.|+++.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 566667799999986533 2 12233344466777777654
No 310
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.32 E-value=0.07 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+++.+.....
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999998765
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.29 E-value=0.088 Score=50.71 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|..|+||||++.+++...+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4789999999999999999988763
No 312
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.24 E-value=0.064 Score=54.54 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=21.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 489999999999999999998875
No 313
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.24 E-value=0.38 Score=54.68 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=29.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
+|+++|.+|+||||+|..++.....+.. ..+.-+++..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~ 139 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADV 139 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCC
Confidence 4788999999999999999988875411 2466677654
No 314
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.23 E-value=0.37 Score=54.37 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=35.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcC-HHHHHHHHHHHhCCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPD-IKKIQGQIADKLGLK 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~ 57 (1314)
+|+++|.+|+||||++..++.....+ =..+..+++..... ..+.+....+..+..
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccccCchhHHHHHHhcccCCcc
Confidence 47889999999999999999888743 23466666543221 112233445555544
No 315
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.14 E-value=0.063 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+++.++....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 489999999999999999998764
No 316
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.10 E-value=0.071 Score=53.93 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.+++...
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 317
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.07 E-value=0.07 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.05 E-value=0.072 Score=53.15 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|+|.|+.|+||||+|+.++....
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 319
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.04 E-value=0.07 Score=55.34 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|+.|+||||+|+.++....
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999988764
No 320
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.03 E-value=0.25 Score=55.38 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=54.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc--cCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH----
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND--KLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA---- 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~---- 67 (1314)
++|.|.+|+|||+|+.+++++.... +.-..++++-+++.. .+.++.+.+.+.=.+. ..+.+...+.
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~ 233 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR 233 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999886531 111157778777654 4566666655431111 1112222221
Q ss_pred --HHHHHHHh--cCCeEEEEEeCCC
Q 042307 68 --RKLCERLR--KEKKILVILDNIW 88 (1314)
Q Consensus 68 --~~~~~~l~--~~~~~LlvlD~v~ 88 (1314)
-.+-++++ +++++|+++||+.
T Consensus 234 ~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 234 MALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcChH
Confidence 23555555 2799999999975
No 321
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.03 E-value=0.16 Score=49.87 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=57.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCC-------c--cccC---hhH----
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLK-------F--YEES---ESG---- 65 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~--~~~~---~~~---- 65 (1314)
|.|++-.|.||||+|.-.+-+.-.... .|.++.+-+.. ...--..+++.++.. + .... +..
T Consensus 31 i~v~tG~GkGKTTaA~GlalRA~g~G~--rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 31 IIVFTGNGKGKTTAAFGTAARAVGHGK--NVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHTTC--CEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 566677789999999998888764322 46666554421 111222334444211 1 0000 011
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCc--------ccccccCCCCCCCCceEEEEecccc
Q 042307 66 RARKLCERLRKEKKILVILDNIWAN--------LDLENVGIPFGDRGCGVLMTARSQD 115 (1314)
Q Consensus 66 ~~~~~~~~l~~~~~~LlvlD~v~~~--------~~~~~~~~~~~~~~~~ilvTtr~~~ 115 (1314)
......+.+..++--|+|+|++... +++-++... ......||+|+|...
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCc
Confidence 1223333443456779999997432 222122111 123568999999964
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.99 E-value=0.073 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988754
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.95 E-value=0.087 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998764
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.94 E-value=0.072 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|++|+|||||++.+.....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 478999999999999999997754
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.90 E-value=0.076 Score=53.77 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 326
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.87 E-value=0.07 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|+.|+||||+++.++...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48999999999999999998764
No 327
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.82 E-value=0.073 Score=53.27 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.3
Q ss_pred CEEEEcCCCchHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVAR 21 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~ 21 (1314)
+|+|.|+.|+||||+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 328
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.82 E-value=0.095 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|+.|+|||||++.+.....
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 589999999999999999988764
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.81 E-value=0.081 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|++|+||||+|+.++.....
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999988763
No 330
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.77 E-value=0.069 Score=54.42 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=27.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
+|+|.|+.|+|||||++.++....... ..+.+|....
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d~ 60 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMDG 60 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecCC
Confidence 489999999999999999998876321 1245555543
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.74 E-value=0.074 Score=54.06 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred CEEEEcCCCchHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVAR 21 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~ 21 (1314)
+|+|+|+.|+||||+|+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 389999999999999999987
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.71 E-value=0.2 Score=54.27 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=28.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
+|+|.|+.|+|||||++.++.-......-..+.+|....
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 589999999999999999988776321112366666543
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.71 E-value=0.083 Score=54.11 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|+.|+||||+|+.++.....
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3899999999999999999998763
No 334
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.69 E-value=0.078 Score=51.57 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=26.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD 36 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~ 36 (1314)
+|+|+|.+|+|||||++.+....+.+..-.+.+.++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 479999999999999999998877442223455554
No 335
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.68 E-value=0.093 Score=53.89 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|++|+||||+|+.++.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988764
No 336
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.63 E-value=0.059 Score=53.65 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=17.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999988764
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.62 E-value=0.086 Score=53.07 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998874
No 338
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.54 E-value=0.088 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999988764
No 339
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.52 E-value=0.11 Score=51.12 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
++|+|+.|+|||||++.++....
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998875
No 340
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.51 E-value=0.26 Score=56.21 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=34.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQI 50 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 50 (1314)
++|.|.+|+|||+|+.++++... -+.++++-+++.. .+.++.+.+
T Consensus 230 ~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 230 AAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp EEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred EEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 57999999999999999877643 4578888888765 455555554
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.51 E-value=0.077 Score=54.00 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.3
Q ss_pred CEEEEcCCCchHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVAR 21 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~ 21 (1314)
+|+|.|+.|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999975
No 342
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.51 E-value=0.29 Score=55.19 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=54.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccC--CCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHH-----
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKL--FDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGR----- 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 66 (1314)
++|.|.+|+|||+|+.+++++....+. =+.++++-+++.. .+.++.+.+.+.=.+. ..+.....+
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~ 234 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPR 234 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999988764221 1357778777654 4566666665542111 111112222
Q ss_pred -HHHHHHHHh--cCCeEEEEEeCCC
Q 042307 67 -ARKLCERLR--KEKKILVILDNIW 88 (1314)
Q Consensus 67 -~~~~~~~l~--~~~~~LlvlD~v~ 88 (1314)
.-.+-++++ +++++|+++||+.
T Consensus 235 ~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 235 MALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 123444454 4899999999963
No 343
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.44 E-value=0.094 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+++.++....
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998765
No 344
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.42 E-value=0.016 Score=72.29 Aligned_cols=125 Identities=14% Similarity=0.281 Sum_probs=67.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||++|+.++...... | +.++.+.-. ....+. ....+..+.+......+.+
T Consensus 514 vLL~GppGtGKT~Lakala~~~~~~--~---i~v~~~~l~--------------~~~~g~-~~~~i~~~f~~a~~~~p~v 573 (806)
T 1ypw_A 514 VLFYGPPGCGKTLLAKAIANECQAN--F---ISIKGPELL--------------TMWFGE-SEANVREIFDKARQAAPCV 573 (806)
T ss_dssp CCCBCCTTSSHHHHHHHHHHHHTCC--C---CCCCCSSST--------------TCCTTT-SSHHHHHHHHHHHHHCSBC
T ss_pred eEEECCCCCCHHHHHHHHHHHhCCC--E---EEEechHhh--------------hhhcCc-cHHHHHHHHHHHHhcCCeE
Confidence 5689999999999999999987522 2 122222210 001111 1123334444444345678
Q ss_pred EEEeCCCCcc----------------cccccCCCC----CCCCceEEEEeccccccccc-c---CCCccEEecCCCHHHH
Q 042307 82 VILDNIWANL----------------DLENVGIPF----GDRGCGVLMTARSQDVLSSK-M---DCQNNFLVGALNESEA 137 (1314)
Q Consensus 82 lvlD~v~~~~----------------~~~~~~~~~----~~~~~~ilvTtr~~~~~~~~-~---~~~~~~~l~~l~~~ea 137 (1314)
+++|+++... .+..+...+ ...+..||.||........+ . +....+.++..+.++.
T Consensus 574 l~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r 653 (806)
T 1ypw_A 574 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp CCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHH
T ss_pred EEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHH
Confidence 8888875420 011111111 12344566666654322211 1 2345677888888999
Q ss_pred HHHHHHHhC
Q 042307 138 WDLFKKLVG 146 (1314)
Q Consensus 138 ~~l~~~~~~ 146 (1314)
.+++..+..
T Consensus 654 ~~Il~~~l~ 662 (806)
T 1ypw_A 654 VAILKANLR 662 (806)
T ss_dssp HHHTTTTTS
T ss_pred HHHHHHHhc
Confidence 999988773
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.41 E-value=0.087 Score=55.84 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.|.|++|+||||+|+.++....
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999998854
No 346
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.39 E-value=0.43 Score=50.15 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=27.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
++.|.|.+|+|||++|.+++.....+ .-..++|++....
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~ 70 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEER 70 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCC
Confidence 47899999999999999987653322 1234777776543
No 347
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.38 E-value=0.085 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|+.|+||||+++.++...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47999999999999999998765
No 348
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.36 E-value=0.091 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.+++...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999987653
No 349
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.34 E-value=0.096 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|++|+||||+|+.++.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987653
No 350
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.29 E-value=0.096 Score=53.58 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998875
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.29 E-value=0.11 Score=53.56 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|+|.|+.|+||||+|+.++....
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998765
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.16 E-value=0.1 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998875
No 353
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.14 E-value=0.097 Score=55.21 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999998754
No 354
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.11 E-value=0.38 Score=48.89 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
++|.|++|+||||+|+.++....
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 58999999999999999998875
No 355
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.07 E-value=0.024 Score=62.72 Aligned_cols=107 Identities=13% Similarity=0.141 Sum_probs=55.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCE-EEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDE-VVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKK 79 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (1314)
+|+|.|+.|+||||+++.++...... ..+ ++.+. +..... .......+...............+.+.+. ..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~e--d~~e~~--~~~~~~~v~q~~~~~~~~~~~~~La~aL~-~~P 197 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIE--DPIEFV--HESKKCLVNQREVHRDTLGFSEALRSALR-EDP 197 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEE--SSCCSC--CCCSSSEEEEEEBTTTBSCHHHHHHHHTT-SCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEcc--CcHHhh--hhccccceeeeeeccccCCHHHHHHHHhh-hCc
Confidence 47999999999999999998776532 122 33222 211100 00000000000000011122335566665 667
Q ss_pred EEEEEeCCCCcccccccCCCCCCCCceEEEEecccc
Q 042307 80 ILVILDNIWANLDLENVGIPFGDRGCGVLMTARSQD 115 (1314)
Q Consensus 80 ~LlvlD~v~~~~~~~~~~~~~~~~~~~ilvTtr~~~ 115 (1314)
-+|++|++.+.+.++.+ ......|..|++|+-...
T Consensus 198 dvillDEp~d~e~~~~~-~~~~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 198 DIILVGEMRDLETIRLA-LTAAETGHLVFGTLHTTS 232 (356)
T ss_dssp SEEEESCCCSHHHHHHH-HHHHHTTCEEEEEESCSS
T ss_pred CEEecCCCCCHHHHHHH-HHHHhcCCEEEEEEccCh
Confidence 77899999877655543 111234656777776654
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.06 E-value=0.1 Score=53.45 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998875
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.05 E-value=0.099 Score=55.03 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+++.++....
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999998765
No 358
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.03 E-value=0.1 Score=54.79 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+++.+++...
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 359
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.02 E-value=0.71 Score=52.16 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=50.1
Q ss_pred EEEEcCCCchHHHHHH-HHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH-----
Q 042307 2 IGVYGIGGVGKTMLVK-EVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA----- 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~-~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~----- 67 (1314)
++|.|..|+|||++|. .++++ + ..-..++++-+++.. .+.++.+.+.+.=.+. ..+.+...+.
T Consensus 165 ~~Ifg~~g~GKT~l~l~~I~n~-~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~ 241 (513)
T 3oaa_A 165 ELIIGDRQTGKTALAIDAIINQ-R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYA 241 (513)
T ss_dssp CEEEESSSSSHHHHHHHHHHTT-S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHH
T ss_pred EEeecCCCCCcchHHHHHHHhh-c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHH
Confidence 4799999999999975 44443 2 112246788888764 5666666665542222 1111222221
Q ss_pred -HHHHHHHh-cCCeEEEEEeCCCC
Q 042307 68 -RKLCERLR-KEKKILVILDNIWA 89 (1314)
Q Consensus 68 -~~~~~~l~-~~~~~LlvlD~v~~ 89 (1314)
-.+-++++ +++++|+++||+..
T Consensus 242 a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 242 GCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHhcCCCEEEEecChHH
Confidence 12333333 47999999999743
No 360
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.98 E-value=0.11 Score=53.23 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.++....
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 361
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.95 E-value=0.098 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~ 22 (1314)
+|+|.|+.|+||||+|+.++..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4899999999999999999875
No 362
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.95 E-value=0.11 Score=55.76 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|.+|+||||+|+.+......
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888764
No 363
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.92 E-value=0.13 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=22.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|+.|+||||+++.++....
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 364
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.90 E-value=0.12 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|+|+.|+|||||++.++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998765
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.90 E-value=0.1 Score=53.95 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|+|.|+.|+||||+|+.++....
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998753
No 366
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.90 E-value=0.084 Score=51.68 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=17.1
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEV 19 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~ 19 (1314)
+++|+|+.|+||||+++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999963
No 367
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.89 E-value=0.096 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|+|++|+||||+|+.+....
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999997643
No 368
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=90.81 E-value=0.19 Score=54.43 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=29.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
||+|.|-|||||||.|..++.-.....+ .|.-|++..
T Consensus 50 VIAIaGKGGVGKTTtavNLA~aLA~~Gk--kVllID~Dp 86 (314)
T 3fwy_A 50 VFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDP 86 (314)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESS
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 6899999999999999999888875433 366677764
No 369
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.80 E-value=0.14 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|+.|+||||+++.++...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999998775
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.79 E-value=0.13 Score=53.00 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|+|.|+.|+||||+|+.++....
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998764
No 371
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.78 E-value=0.39 Score=63.53 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=53.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc-----cChhHHH-HHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE-----ESESGRA-RKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~~~~l 74 (1314)
+|.|.|.+|+||||||.+++...... -..++|++........ .++.++..... ....+.+ ..+.+..
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~lv 806 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHHHH
Confidence 47899999999999999999887633 2358899887765543 26667654221 1222222 2333223
Q ss_pred hcCCeEEEEEeCCCCc
Q 042307 75 RKEKKILVILDNIWAN 90 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~~ 90 (1314)
.+.+.-++|+|.+...
T Consensus 807 ~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 807 RSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHTCCSEEEESCSTTC
T ss_pred HccCCCEEEEechhhh
Confidence 3356679999998754
No 372
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.74 E-value=0.12 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|.+|+||||+++.+.....
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999988765
No 373
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.68 E-value=0.12 Score=51.04 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+.|+|++|+||||+|..+++...
T Consensus 61 ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998875
No 374
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.65 E-value=0.19 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|..|+||||++..+.....
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcc
Confidence 478999999999999999998765
No 375
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.64 E-value=0.12 Score=52.61 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999998764
No 376
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.62 E-value=0.39 Score=53.74 Aligned_cols=87 Identities=21% Similarity=0.279 Sum_probs=53.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcc--------cCCC-EEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARND--------KLFD-EVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESES 64 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~ 64 (1314)
++|.|.+|+|||+|+.+++++.... ++-+ .++++-+++.. .+.++.+.+.+.=... ..+.+..
T Consensus 150 ~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~ 229 (464)
T 3gqb_B 150 LPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTI 229 (464)
T ss_dssp CCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTH
T ss_pred EEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHH
Confidence 4689999999999999998886531 1122 57778777654 4555555554421111 1112222
Q ss_pred HHH------HHHHHHHh--cCCeEEEEEeCCC
Q 042307 65 GRA------RKLCERLR--KEKKILVILDNIW 88 (1314)
Q Consensus 65 ~~~------~~~~~~l~--~~~~~LlvlD~v~ 88 (1314)
.+. -.+-++++ +++++|+++||+.
T Consensus 230 ~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 230 ERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 222 23555555 3799999999974
No 377
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.62 E-value=0.097 Score=56.21 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|.|.|++|+||||+|+.++.+.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 378
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.58 E-value=0.11 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|+.|+||||+++.++...
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.56 E-value=0.076 Score=54.45 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|+.|+||||+|+.++.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999988763
No 380
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.56 E-value=0.12 Score=53.97 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|++|+||||+|+.+++...
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999997763
No 381
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.55 E-value=0.12 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|+.|+|||||++.++.-.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47999999999999999999876
No 382
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.50 E-value=0.92 Score=49.33 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=34.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc-CcCHHHHHHHHHHHhCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ-TPDIKKIQGQIADKLGL 56 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 56 (1314)
+|+|+|+.|+||||+++.++...+... ..+.++...- .....+......+.++.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 589999999999999999998876431 2355554332 12233344455566664
No 383
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.49 E-value=0.12 Score=56.00 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|..++....
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 384
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.38 E-value=0.15 Score=52.25 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|+.|+||||+|+.++....
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 385
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.35 E-value=0.45 Score=63.02 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=59.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccc------cChhHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYE------ESESGRARKLCERL 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l 74 (1314)
+|-|+|+.|+||||||.+++...... =..++|+++.+..+... ++.+|++.+. +.....++.....+
T Consensus 1433 ~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~ 1505 (1706)
T 3cmw_A 1433 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 1505 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHH
Confidence 47899999999999999999765422 34589999988877654 8888887543 22233444555555
Q ss_pred hcCCeEEEEEeCCCCc
Q 042307 75 RKEKKILVILDNIWAN 90 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~~ 90 (1314)
+.+..-++|+|-|...
T Consensus 1506 ~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1506 RSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHTCCSEEEESCSTTC
T ss_pred HcCCCCEEEEccHHhC
Confidence 5577889999997543
No 386
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.33 E-value=0.62 Score=53.47 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=50.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHHHHH----HhCCC----------ccccChhHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQIAD----KLGLK----------FYEESESGR 66 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~----~l~~~----------~~~~~~~~~ 66 (1314)
++|.|.+|+|||+|+.++++... -+.++++-+++.. .+.++++.+-+ ..+.. ..+.....+
T Consensus 235 ~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R 310 (600)
T 3vr4_A 235 AAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAR 310 (600)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHH
T ss_pred EeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHH
Confidence 58999999999999999988743 4578888888763 34444444322 12211 011111222
Q ss_pred H------HHHHHHHh-cCCeEEEEEeCCC
Q 042307 67 A------RKLCERLR-KEKKILVILDNIW 88 (1314)
Q Consensus 67 ~------~~~~~~l~-~~~~~LlvlD~v~ 88 (1314)
. -.+-++++ +++++|+++|++.
T Consensus 311 ~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 311 EASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 1 22334444 3799999999974
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.33 E-value=0.14 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+++.++....
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999998764
No 388
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.27 E-value=0.67 Score=54.50 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=36.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHH-HHhCCC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIA-DKLGLK 57 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~-~~l~~~ 57 (1314)
++.|.|.+|+||||+|.+++.....+. =..++|++... +..++...++ ...+..
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHHHcCCC
Confidence 478999999999999999998876431 12488887655 3555555443 334443
No 389
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.25 E-value=0.18 Score=50.83 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=29.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPD 42 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~ 42 (1314)
|.+.|.||+||||+|..++.....+. + .+..+++.....
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~q~~ 47 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVETHGR 47 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCCCCC
Confidence 67899999999999999998877432 2 366666655433
No 390
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.17 E-value=0.14 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999998775
No 391
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.16 E-value=0.85 Score=52.50 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=34.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIA 51 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 51 (1314)
++.|.|.+|+||||+|..++.....+. =..++|++... +..++...+.
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~ 249 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMM 249 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHH
Confidence 478999999999999999998876321 12488887654 4455555544
No 392
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.08 E-value=0.88 Score=63.49 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=76.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeEE
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKIL 81 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (1314)
|.++|++|+|||++|+++..... .+ .++.++++...+...+++.+...+.......... ..--..+++++
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~~V 1339 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKNLV 1339 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSCEE
T ss_pred EEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCceEE
Confidence 67899999999999988876532 12 4667888888888777777776654321100000 00000257888
Q ss_pred EEEeCCCCc--cc---------cccc---CCCCC-C-------CCceEEEEecccc------ccccccCCCccEEecCCC
Q 042307 82 VILDNIWAN--LD---------LENV---GIPFG-D-------RGCGVLMTARSQD------VLSSKMDCQNNFLVGALN 133 (1314)
Q Consensus 82 lvlD~v~~~--~~---------~~~~---~~~~~-~-------~~~~ilvTtr~~~------~~~~~~~~~~~~~l~~l~ 133 (1314)
+.+||++-. +. +.++ +..+. . .+..+|.++.... +.++..+....+.++..+
T Consensus 1340 lFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~ 1419 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPS 1419 (2695)
T ss_dssp EEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCT
T ss_pred EEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCC
Confidence 999996532 11 1111 00000 1 1234555554432 222223344678888889
Q ss_pred HHHHHHHHHHHh
Q 042307 134 ESEAWDLFKKLV 145 (1314)
Q Consensus 134 ~~ea~~l~~~~~ 145 (1314)
.++-..+|....
T Consensus 1420 ~~~l~~I~~~il 1431 (2695)
T 4akg_A 1420 GKSLSQIYEIYY 1431 (2695)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887665
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.05 E-value=0.13 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|+.|+||||+|+.+++..
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998765
No 394
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.02 E-value=0.13 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|.|+.|+|||||++.++.-..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 479999999999999999987753
No 395
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.02 E-value=0.16 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|+.|+||||+|+.++....
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998864
No 396
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.01 E-value=0.13 Score=52.40 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|.|+.|+|||||++.++....
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 479999999999999999988764
No 397
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.98 E-value=0.16 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|+.|+||||+|+.++....
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 398
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.98 E-value=0.77 Score=53.07 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=26.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEe
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADV 37 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~ 37 (1314)
+|+|+|.+|+||||++..++.....+. . .+..|+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G-~-kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKG-W-KTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-C-eEEEEec
Confidence 488999999999999999998876432 2 3555555
No 399
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.97 E-value=0.62 Score=53.83 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=33.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQI 50 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 50 (1314)
++.|.|.+|+||||+|..++....... =..|+|++.... ..++...+
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s--~~~l~~r~ 251 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMS--AQQLVMRM 251 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSC--HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCC--HHHHHHHH
Confidence 478999999999999999998876421 124888876543 44544444
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.92 E-value=0.14 Score=52.67 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.3
Q ss_pred CEEEEcCCCchHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVAR 21 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~ 21 (1314)
+|+|.|+.|+||||+|+.++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 401
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.79 E-value=0.22 Score=53.73 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=22.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|+|++|+||||+++.++...+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5899999999999999999988764
No 402
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.69 E-value=0.61 Score=52.99 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=51.3
Q ss_pred EEEEcCCCchHHHHHH-HHHHHhhc----ccCCC-EEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH
Q 042307 2 IGVYGIGGVGKTMLVK-EVARQARN----DKLFD-EVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~-~~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~ 67 (1314)
++|.|.+|+|||+||. .+++.... .++.+ .++++-+++.. .+.++.+.+.+.=.+. ..+.....+.
T Consensus 165 ~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 244 (510)
T 2ck3_A 165 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQY 244 (510)
T ss_dssp CEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHH
T ss_pred EEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHH
Confidence 4799999999999965 45554431 11234 47788888754 4566666665532211 1111112221
Q ss_pred ------HHHHHHHh-cCCeEEEEEeCCCC
Q 042307 68 ------RKLCERLR-KEKKILVILDNIWA 89 (1314)
Q Consensus 68 ------~~~~~~l~-~~~~~LlvlD~v~~ 89 (1314)
-.+-++++ +++++|+++||+..
T Consensus 245 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 245 LAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 23344444 37999999999743
No 403
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.55 E-value=0.56 Score=62.95 Aligned_cols=83 Identities=24% Similarity=0.399 Sum_probs=54.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCcc-----ccChhHHHHHHHHHH-
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFY-----EESESGRARKLCERL- 74 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l- 74 (1314)
+|.|.|++|+||||+|.+++...... =..++|++.....+.. .++.++.... .....+.+....+.+
T Consensus 385 lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv 457 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHHHH
Confidence 47899999999999999999887633 2358999988876643 2666766422 112223333333333
Q ss_pred hcCCeEEEEEeCCCCc
Q 042307 75 RKEKKILVILDNIWAN 90 (1314)
Q Consensus 75 ~~~~~~LlvlD~v~~~ 90 (1314)
.+...-++|+|.+...
T Consensus 458 ~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 458 RSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHTCCSEEEESCGGGC
T ss_pred HhcCCcEEEECCHHHh
Confidence 2356679999997543
No 404
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.51 E-value=0.16 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|..++....
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
No 405
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.47 E-value=0.53 Score=51.47 Aligned_cols=42 Identities=29% Similarity=0.301 Sum_probs=30.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIK 44 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 44 (1314)
++.+.|-||+||||+|..++....... ..|.-|+.....++.
T Consensus 18 i~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 18 WIFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHNLS 59 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCHHH
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCChh
Confidence 356789999999999999998887432 247777776544433
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.46 E-value=0.14 Score=54.74 Aligned_cols=20 Identities=30% Similarity=0.710 Sum_probs=18.9
Q ss_pred CEEEEcCCCchHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVA 20 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~ 20 (1314)
+|+|.|+.|+||||+|+.+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 407
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.45 E-value=0.19 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|+.|+||||+|+.++....
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998864
No 408
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.41 E-value=0.35 Score=50.99 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=33.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKK 45 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 45 (1314)
|+|.|-||+||||+|..++....... ..|.-|++....++..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 67799999999999999999988543 3588888876655544
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.35 E-value=0.46 Score=51.39 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=32.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCC-EEEEEEeccCcCHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFD-EVVYADVSQTPDIKKIQGQIA 51 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~ 51 (1314)
+++|.|.+|+||||++..++...... -. .++|+.... ...++...+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHH
Confidence 47899999999999999999887643 22 477776543 3334433333
No 410
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.32 E-value=0.26 Score=53.55 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=28.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
+|+|.|+.|+||||+++.+.........-..+.+++....
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5899999999999999999887541001123666666543
No 411
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.27 E-value=0.15 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||||..++....
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 478999999999999999987653
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.15 E-value=1.1 Score=51.24 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|+|..|+||||+++.++...+.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhh
Confidence 5899999999999999999988763
No 413
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.14 E-value=0.97 Score=51.29 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=50.4
Q ss_pred EEEEcCCCchHHHHHH-HHHHHhhcccCCCE-EEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH----
Q 042307 2 IGVYGIGGVGKTMLVK-EVARQARNDKLFDE-VVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA---- 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~---- 67 (1314)
++|.|.+|+|||+||. .+++... .+. ++++-+++.. .+.++.+.+.+.=.+. ..+.....+.
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4799999999999976 4554432 453 5778887754 4556666665532222 1111222221
Q ss_pred --HHHHHHHh-cCCeEEEEEeCCCC
Q 042307 68 --RKLCERLR-KEKKILVILDNIWA 89 (1314)
Q Consensus 68 --~~~~~~l~-~~~~~LlvlD~v~~ 89 (1314)
-.+-++++ +++++|+++||+..
T Consensus 241 ~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 241 AGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEecHHH
Confidence 23444444 37999999999643
No 414
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.05 E-value=0.097 Score=56.24 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=24.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP 41 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~ 41 (1314)
+|+|.|.+|+||||+|+.+....... .+ .+..++...-.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~-~~-~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRRE-GV-KAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-TC-CEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc-CC-CeeEeecchhh
Confidence 58999999999999999999865421 12 24556655533
No 415
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.01 E-value=0.58 Score=53.06 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=50.1
Q ss_pred EEEEcCCCchHHHHHH-HHHHHhhcccCCCE-EEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhHHH----
Q 042307 2 IGVYGIGGVGKTMLVK-EVARQARNDKLFDE-VVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESGRA---- 67 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~---- 67 (1314)
++|.|.+|+|||+||. .+++... .+. ++++-+++.. .+.++.+.+.+.=.+. ..+.+...+.
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 253 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPY 253 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 5799999999999976 5555432 453 5788887754 4556666665432111 1111112221
Q ss_pred --HHHHHHHh-cCCeEEEEEeCCCC
Q 042307 68 --RKLCERLR-KEKKILVILDNIWA 89 (1314)
Q Consensus 68 --~~~~~~l~-~~~~~LlvlD~v~~ 89 (1314)
-.+-++++ +++.+|+++||+..
T Consensus 254 ~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 254 AGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeccHHH
Confidence 23344444 37999999999743
No 416
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.00 E-value=0.13 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|.|.|++|+||||+|+.++....
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999988764
No 417
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.81 E-value=0.48 Score=48.67 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=26.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYA 35 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv 35 (1314)
+|+|.|+.|+||||+++.++...... .+..+...
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 37899999999999999999988743 34424433
No 418
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.79 E-value=0.29 Score=53.15 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=28.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS 38 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~ 38 (1314)
+|+|+|.+|+||||++..++...... =..+.+++..
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 58899999999999999999887643 2346677654
No 419
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.79 E-value=0.27 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|+|+.|+||||+++.++...+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988764
No 420
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.74 E-value=0.91 Score=51.97 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=30.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
++.|.|.+|+||||+|.+++.....+ =..++|++....
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms 236 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG 236 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence 47899999999999999999887644 235888876644
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.73 E-value=0.2 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||||..++....
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCccCHHHHHHHHHHhCC
Confidence 478999999999999999997753
No 422
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.71 E-value=0.13 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=14.9
Q ss_pred CEEEEcCCCchHHHHHHHHH-HHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVA-RQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~-~~~ 23 (1314)
+|+|+|+.|+||||+++.++ ...
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 47999999999999999998 654
No 423
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.67 E-value=0.29 Score=52.08 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=27.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccC
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQT 40 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~ 40 (1314)
|.|+|.+|+|||++|+.+++..... -...+.++++..
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred EEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 7899999999999999999875422 123566777654
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.60 E-value=0.15 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|.|+.|+||||||..++.+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 48999999999999999998754
No 425
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.45 E-value=0.23 Score=56.57 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|.|+|++|+||||+|+.++.+.
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999998654
No 426
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.27 E-value=0.17 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.|.|++|+||||||.+++.+..
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987754
No 427
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.22 E-value=0.57 Score=47.37 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=32.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIAD 52 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 52 (1314)
.|++-|+.|+||||+++.+++..... .+..+++..-.....+-+..+.++.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 37899999999999999999988743 3323443332222223344444443
No 428
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.15 E-value=0.39 Score=52.32 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=30.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPD 42 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~ 42 (1314)
+|+|+|-||+||||+|..++.......+ .|.-|++....+
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~--~VlliD~D~~~~ 82 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDPKHD 82 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESSSCC
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCC--eEEEEeCCCCCC
Confidence 4788899999999999999988875422 477788765443
No 429
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.10 E-value=0.42 Score=50.90 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=30.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP 41 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~ 41 (1314)
+|+|.|-||+||||+|..++....... ..|.-|++....
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q~ 41 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTTS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCCC
Confidence 477889999999999999999887432 247778876543
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.00 E-value=0.39 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|.+|+|||||+.+++....
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 378999999999999999998865
No 431
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.78 E-value=0.44 Score=51.04 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=29.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhccc-C-------CCEEEEEEeccC
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDK-L-------FDEVVYADVSQT 40 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~-~-------f~~~~wv~~~~~ 40 (1314)
+++|.|++|+||||||..++....... . -..++|++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 478999999999999999987654321 0 134778876654
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.76 E-value=0.24 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~ 22 (1314)
+|.|.|++|+||||+|+.++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999874
No 433
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.68 E-value=0.27 Score=50.65 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|+.|+||||+++.++.....
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3789999999999999999998874
No 434
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.62 E-value=0.27 Score=46.76 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~ 22 (1314)
|.|.|.+|+||||+|.++..+
T Consensus 19 vli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 689999999999999999875
No 435
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.61 E-value=0.24 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|+.|+|||||++.++.-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987554
No 436
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.60 E-value=0.33 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=22.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++.+..
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999876
No 437
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.48 E-value=0.37 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|+.|+||||+++.++....
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 479999999999999999988765
No 438
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.45 E-value=0.36 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|+|+.|+||||+++.++...+.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhccc
Confidence 5899999999999999999988764
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.43 E-value=0.29 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|.|..|+|||||++.+.....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987643
No 440
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.41 E-value=0.21 Score=51.66 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=24.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD 36 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~ 36 (1314)
+++|.|+.|+|||||++.++.-.+ ...+.++++
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~ 65 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYID 65 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC---CCceEEEEC
Confidence 479999999999999999875443 234455553
No 441
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.40 E-value=0.25 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|+.|+|||||++.++.-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999987554
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.34 E-value=0.27 Score=54.37 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||||..++....
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 589999999999999999998764
No 443
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.16 E-value=0.49 Score=51.01 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=30.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP 41 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~ 41 (1314)
+|+|.|-||+||||+|..++....... ..|.-|++....
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q~ 42 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence 477889999999999999998887432 247778876543
No 444
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.12 E-value=1.5 Score=43.70 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=32.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIAD 52 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 52 (1314)
|+|-|.-|+||||.++.+++..+.+. . .+++..-.......+..+.++.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHhh
Confidence 78899999999999999999987542 2 2444443333334444455443
No 445
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.12 E-value=0.61 Score=47.24 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=32.1
Q ss_pred CEEEE-cCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHH
Q 042307 1 MIGVY-GIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKK 45 (1314)
Q Consensus 1 vi~i~-G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 45 (1314)
+|+|+ +-||+||||+|..++....... .+.-|++....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHH
Confidence 35664 6899999999999999987542 688888877655443
No 446
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=87.11 E-value=0.62 Score=53.19 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=33.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCc-CHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTP-DIKKIQGQ 49 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~ 49 (1314)
++|.|.+|+|||+|+.++++... -+.++++-+++.. .+.++++.
T Consensus 224 ~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 224 AAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp EEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTT
T ss_pred EeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHH
Confidence 57999999999999999987743 4578888888763 34444433
No 447
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.08 E-value=0.22 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|+.|+|||||++.++--.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987543
No 448
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.99 E-value=0.39 Score=50.93 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=26.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS 38 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~ 38 (1314)
++++.|.||+||||++..++.... ... .+.-|+..
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~g~--~v~vvd~D 50 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-DNY--KVAYVNLD 50 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTS--CEEEEECC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-CCC--eEEEEeCC
Confidence 468899999999999999998876 322 34445543
No 449
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=86.94 E-value=0.34 Score=47.84 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=50.8
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHHHHHHHHHHhCCCccccChhHHHHHHHHHHhcCCeE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKKIQGQIADKLGLKFYEESESGRARKLCERLRKEKKI 80 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (1314)
++.|+|+.|+||||+|.+++.+....+ . .++++..... .+.....+...++....... ......+.+.+. +..-
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~-~~~~~~~~~~~~-~~~d 78 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHV-IERPEEMRKYIE-EDTR 78 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEE-ESSGGGGGGGCC-TTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeeccc--cccCcccEEecCCCceeeEE-ECCHHHHHHHhc-CCCC
Confidence 367999999999999988887765332 1 3444432211 01000011111222111000 001112222222 3567
Q ss_pred EEEEeCCCCc-ccccccCCCCCCCCceEEEEecccc
Q 042307 81 LVILDNIWAN-LDLENVGIPFGDRGCGVLMTARSQD 115 (1314)
Q Consensus 81 LlvlD~v~~~-~~~~~~~~~~~~~~~~ilvTtr~~~ 115 (1314)
++++|.+... .+|..........+..|++|.+...
T Consensus 79 vviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 79 GVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp EEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred EEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 9999997654 2222221111123678888887543
No 450
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.94 E-value=0.2 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=20.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~ 22 (1314)
+++|.|+.|+|||||++.++.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999876
No 451
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.83 E-value=0.32 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~ 22 (1314)
|+|.|.+|+|||||...+...
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999753
No 452
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.78 E-value=0.32 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+++.++....
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999988654
No 453
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.68 E-value=0.34 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|.|..|+|||||++.+....
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 454
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.61 E-value=0.37 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.4
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|.|+.|+||||+|+.++....
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999987653
No 455
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.55 E-value=0.28 Score=48.61 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVAR 21 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~ 21 (1314)
|+|+|.+|+|||||+..++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 456
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.40 E-value=0.26 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|+|+.|+|||||++.++.-.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999986654
No 457
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.34 E-value=0.26 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|+.|+|||||++.++.-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999987543
No 458
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.34 E-value=0.89 Score=45.98 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|+.|+||||+++.+++....
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998874
No 459
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.20 E-value=0.34 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+|+|+|.+|+||||++.+++....
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999998864
No 460
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.19 E-value=0.26 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|+.|+|||||++.++.-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999987554
No 461
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.08 E-value=0.32 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~ 22 (1314)
+++|.|+.|+|||||++.++.-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 462
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.08 E-value=0.39 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|.|.+|+|||||+.++....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998653
No 463
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.89 E-value=0.38 Score=53.94 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.++|++|+|||++|+.+++...
T Consensus 54 vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998874
No 464
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=85.88 E-value=0.42 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|+|+|+.|+||||+++.++....
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 78999999999999999988765
No 465
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.83 E-value=0.33 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~ 22 (1314)
+++|+|+.|+|||||++.++.-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 466
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.79 E-value=0.29 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|+.|+|||||++.++.-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47999999999999999987554
No 467
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.75 E-value=0.29 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|+.|+|||||++.++--.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999987554
No 468
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.75 E-value=0.29 Score=51.68 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=24.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEE
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYAD 36 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~ 36 (1314)
+++|.|+.|+|||||++.++.-.+. ..+.++++
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~ 71 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHLL 71 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCC---SSCEEEET
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEEC
Confidence 4799999999999999999865432 23455543
No 469
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.70 E-value=0.35 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+|+|+|+.|+|||||++.+..-.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 47999999999999999998776
No 470
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.65 E-value=0.3 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=20.9
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|.|+.|+|||||++.++.-.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999986654
No 471
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.64 E-value=0.3 Score=50.95 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=20.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|+|+.|+|||||++.++.-.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999876543
No 472
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.60 E-value=0.73 Score=46.77 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARN 25 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~ 25 (1314)
+|+|.|+.|+||||+++.+++....
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3789999999999999999998874
No 473
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.58 E-value=0.4 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.++|++|+|||++|+.+++...
T Consensus 75 ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998774
No 474
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.52 E-value=0.3 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.5
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|.|+.|+|||||++.++.-.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999875543
No 475
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.52 E-value=0.43 Score=46.05 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|++.|.+|+|||||+..+....
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998664
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.41 E-value=0.62 Score=47.08 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=31.8
Q ss_pred CEEEE-cCCCchHHHHHHHHHHHhhcccCCCEEEEEEeccCcCHHH
Q 042307 1 MIGVY-GIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQTPDIKK 45 (1314)
Q Consensus 1 vi~i~-G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 45 (1314)
+|+|+ +-||+||||+|..++....... ..+..+++....+...
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHHH
Confidence 46676 5899999999999999887532 2588888876554443
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.39 E-value=1.9 Score=50.75 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=27.3
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEecc
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVSQ 39 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~~ 39 (1314)
+++|.|..|+|||||++.++....... ..++|+...+
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~ee 319 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANK--ERAILFAYEE 319 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEeC
Confidence 478999999999999999997765321 1356666543
No 478
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.34 E-value=0.31 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|+.|+|||||++.++--.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999987654
No 479
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.24 E-value=0.45 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|.|.+|+|||||+..+....
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998753
No 480
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.23 E-value=0.32 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|+|+.|+|||||++.++.-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999987554
No 481
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.03 E-value=0.33 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|.|+.|+|||||++.++.-.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999876543
No 482
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.95 E-value=0.33 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.2
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|+|+.|+|||||++.++.-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999987654
No 483
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=84.91 E-value=0.9 Score=51.59 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=46.8
Q ss_pred EEEEcCCCchHHHHHH-HHHHHhhcccCCC-EEEEEEeccCc-CHHHHHHHHHHHhCCC-------ccccChhH------
Q 042307 2 IGVYGIGGVGKTMLVK-EVARQARNDKLFD-EVVYADVSQTP-DIKKIQGQIADKLGLK-------FYEESESG------ 65 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~-~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 65 (1314)
++|.|.+|+|||+||. .+++... .+ .++++-+++.. .+.++.+.+.+.=.+. ..+.+...
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 241 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPY 241 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHH
T ss_pred EEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHH
Confidence 4789999999999976 4554432 34 46788887754 3445555543321111 01111111
Q ss_pred HHHHHHHHHh-cCCeEEEEEeCCC
Q 042307 66 RARKLCERLR-KEKKILVILDNIW 88 (1314)
Q Consensus 66 ~~~~~~~~l~-~~~~~LlvlD~v~ 88 (1314)
..-.+-++++ +++++|+++||+.
T Consensus 242 ~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 242 TGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHcCCcEEEEEecHH
Confidence 1122333333 3899999999964
No 484
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=84.83 E-value=0.51 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|.|.+|+|||||+.++....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998764
No 485
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.83 E-value=0.34 Score=51.32 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|+|+.|+|||||++.++.-.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999876543
No 486
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.82 E-value=0.48 Score=47.18 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|+|.+|+|||||+..+....
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998664
No 487
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=84.73 E-value=0.48 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|+|.+|+|||||+.++....
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999988754
No 488
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=84.68 E-value=0.82 Score=50.21 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=31.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh--cccCCCEEEEEEeccCcCHH
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR--NDKLFDEVVYADVSQTPDIK 44 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~--~~~~f~~~~wv~~~~~~~~~ 44 (1314)
++.+.|.||+||||+|..++.... ... ..+.-|+.....++.
T Consensus 20 i~~~~gkGGvGKTt~a~~lA~~la~~~~g--~~vllid~D~~~~l~ 63 (348)
T 3io3_A 20 WIFVGGKGGVGKTTTSSSVAVQLALAQPN--EQFLLISTDPAHNLS 63 (348)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCHHH
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCChH
Confidence 467889999999999999998876 332 247778877544433
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=84.60 E-value=0.47 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~ 22 (1314)
|+|.|.+|+|||||+..+...
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999864
No 490
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.58 E-value=0.35 Score=50.62 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|.|+.|+|||||++.++.-.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999986543
No 491
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.48 E-value=0.36 Score=51.33 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.6
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
+++|.|+.|+|||||++.++.-.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999876543
No 492
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=84.47 E-value=0.5 Score=46.72 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|+|.+|+|||||+.++....
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 493
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.39 E-value=0.51 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|+|.+|+|||||+..+....
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998653
No 494
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.36 E-value=0.37 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.1
Q ss_pred CEEEEcCCCchHHHHHHHHHHHh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~ 23 (1314)
+++|.|+.|+|||||++.++.-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999987554
No 495
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.28 E-value=0.4 Score=54.49 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=28.0
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhhcccCCCEEEEEEec
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQARNDKLFDEVVYADVS 38 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~~~~~f~~~~wv~~~ 38 (1314)
+|+|+|.+|+||||+|..++.....+. ..+..+++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G--~kVllv~~D 136 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRG--LKPALIAAD 136 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHH--CCEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecc
Confidence 589999999999999999998876432 236666654
No 496
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.27 E-value=0.46 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
|.++|++|+|||++|+.+++...
T Consensus 49 vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 67999999999999999998764
No 497
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=84.18 E-value=0.5 Score=46.14 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~ 22 (1314)
|+|.|.+|+|||||+.++...
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 789999999999999998754
No 498
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.16 E-value=0.51 Score=46.07 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 042307 2 IGVYGIGGVGKTMLVKEVARQ 22 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~ 22 (1314)
|+|+|.+|+|||||...+...
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999865
No 499
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.12 E-value=0.54 Score=45.43 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 042307 2 IGVYGIGGVGKTMLVKEVARQA 23 (1314)
Q Consensus 2 i~i~G~~G~GKTtla~~~~~~~ 23 (1314)
|+|.|.+|+|||||+..+....
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998764
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.11 E-value=0.54 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.7
Q ss_pred CEEEEcCCCchHHHHHHHHHHHhh
Q 042307 1 MIGVYGIGGVGKTMLVKEVARQAR 24 (1314)
Q Consensus 1 vi~i~G~~G~GKTtla~~~~~~~~ 24 (1314)
.|+|.|..|+||||+++.+++...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998864
Done!