BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042312
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UX2|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Major Dimer
          Length = 130

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 38  QIVNFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGL 94
           ++ + +R IRDPE P             + V   +E+   ++I FTPT+ HCS+A +IGL
Sbjct: 12  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71

Query: 95  CLRVKLKEFFP 105
           CLRVKL+   P
Sbjct: 72  CLRVKLQRCLP 82


>pdb|3UX3|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer
 pdb|3UX3|B Chain B, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer
          Length = 130

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 38  QIVNFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGL 94
           ++ + +R IRDPE P             + V   +E+   ++I FTPT+ HCS+A +IGL
Sbjct: 12  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71

Query: 95  CLRVKLKEFFP 105
           CLRVKL+   P
Sbjct: 72  CLRVKLQRCLP 82


>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
           Ly341495 Antagonist
 pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
           Ly341495 Antagonist
          Length = 496

 Score = 29.3 bits (64), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 13/54 (24%)

Query: 2   TLGLINANPVVHAKKERVPRTEESHSHSDDCWRS---LTQIVNFVRD----IRD 48
           TL  INA+PV+      +P         D CW S   L Q + F+RD    IRD
Sbjct: 58  TLDKINADPVL------LPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRD 105


>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
           Subtype 1 Complexed With Glutamate
 pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
           Subtype 1 Complexed With Glutamate
 pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
           Subtype 1 Ligand Free Form I
 pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
           Subtype 1 Ligand Free Form I
 pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
           Subtype 1 Ligand Free Form Ii
 pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
           Subtype 1 Ligand Free Form Ii
 pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
           Subtype 1 Complexed With Glutamate And Gadolinium Ion
 pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
           Subtype 1 Complexed With An Antagonist
 pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
           Subtype 1 Complexed With An Antagonist
          Length = 490

 Score = 29.3 bits (64), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 13/54 (24%)

Query: 2   TLGLINANPVVHAKKERVPRTEESHSHSDDCWRS---LTQIVNFVRD----IRD 48
           TL  INA+PV+      +P         D CW S   L Q + F+RD    IRD
Sbjct: 53  TLDKINADPVL------LPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRD 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,049,257
Number of Sequences: 62578
Number of extensions: 90454
Number of successful extensions: 136
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 4
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)