BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042312
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9G6|U195A_ARATH MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310
PE=2 SV=2
Length = 157
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 77/117 (65%), Gaps = 13/117 (11%)
Query: 1 MTLGLINANPVVHAKKERVPRTEESHSHSDDCWRSLT-------QIVNFVRDIRDPEHPY 53
M GLIN NP+++ KKER RT+ S + LT +I + +RDI+DPEHP
Sbjct: 1 MVSGLINENPIIYPKKERRLRTDTSITDE------LTPEPIDQLEIFDHIRDIKDPEHPN 54
Query: 54 SLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
+LE L V++E+S+ VD++ + +TFTPT++HCSMA VIGLC+RVKL P +K+
Sbjct: 55 TLEDLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKI 111
>sp|Q9SR25|U195B_ARATH MIP18 family protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380
PE=2 SV=2
Length = 149
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 8/107 (7%)
Query: 5 LINANPVVHAKKERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHP-YSLEQLSVLSE 63
L N NP+++ K+ R RT++S S D + S N +RDI+DPEHP SLE L+VL+E
Sbjct: 5 LTNKNPIIYPKRTRRYRTDQS---STDEFSS----TNRIRDIKDPEHPELSLEDLNVLTE 57
Query: 64 ESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
ES+ VD+ + ITFTPT+ HC + IGLC+ VKL + P FKV
Sbjct: 58 ESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKV 104
>sp|O62252|U195_CAEEL MIP18 family protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10
PE=1 SV=1
Length = 160
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 67/113 (59%), Gaps = 11/113 (9%)
Query: 5 LINANPVVHAKKER---VPRTEESHSHSD--DCWRSLTQIVNFVRDIRDPEHPYSLEQLS 59
L NANP + K R V TE S D D W +I + +RDI DPEHPY+LEQL+
Sbjct: 6 LDNANPTLFDSKPRHRPVTGTERDESVEDPIDSW----EIFDLIRDINDPEHPYTLEQLN 61
Query: 60 VLSEESITV--DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
V+ EE I V DE+ + + FTPTI HCSMA +IGL +RVKL P KV
Sbjct: 62 VVQEELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKV 114
>sp|Q9VTC4|U195A_DROME MIP18 family protein CG7949 OS=Drosophila melanogaster GN=CG7949
PE=1 SV=1
Length = 156
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 7 NANPVVHAK-KERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEES 65
N NP V+ + KERV E + D + +I + +R+I DPEHP +LE+L V+ E+
Sbjct: 7 NINPNVYDRIKERVLTANEEDENVPDPFDK-REIFDLIRNINDPEHPLTLEELHVVQEDL 65
Query: 66 ITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
I +++ + I+FTPTI HCSMA +IGL +RVKL PP FKV
Sbjct: 66 IRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKV 110
>sp|Q54QK1|FA96B_DICDI MIP18 family protein FAM96B OS=Dictyostelium discoideum GN=fam96B
PE=3 SV=2
Length = 163
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 10/114 (8%)
Query: 7 NANPVVHAKKERVPRTEESHSHSDDCWRSL----------TQIVNFVRDIRDPEHPYSLE 56
N NPV++ E E++ + + S+ +I + VR I DPEHP +LE
Sbjct: 4 NPNPVIYVDNENCKSFEDNENSFNSSRYSIEEDQIDEFDEQEIFDLVRSITDPEHPLTLE 63
Query: 57 QLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
QL+V+ E++ ++ + IL+ FTPT+ HCSMA +IGL ++ KL P FKV
Sbjct: 64 QLNVVRIENVNINLENSYILLYFTPTVPHCSMANLIGLSIKEKLARSLPKRFKV 117
>sp|Q9D187|MIP18_MOUSE Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus
musculus GN=Fam96b PE=2 SV=1
Length = 163
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 5 LINANPVVHAKKERVPRT--EESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLS 62
L NANP+++ + P T EE D +I + +R I DPEHP +LE+L+V+
Sbjct: 12 LENANPLIYERSGERPVTAGEEDEEVPDSI--DAREIFDLIRSINDPEHPLTLEELNVVE 69
Query: 63 EESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
+ I V + + + FTPTI HCSMA +IGL ++VKL P FK+
Sbjct: 70 QVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117
>sp|Q9Y3D0|MIP18_HUMAN Mitotic spindle-associated MMXD complex subunit MIP18 OS=Homo
sapiens GN=FAM96B PE=1 SV=1
Length = 163
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 5 LINANPVVHAKKERVPRT--EESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLS 62
L NANP+++ + P T EE D +I + +R I DPEHP +LE+L+V+
Sbjct: 12 LENANPLIYQRSGERPVTAGEEDEQVPDSI--DAREIFDLIRSINDPEHPLTLEELNVVE 69
Query: 63 EESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
+ + V + + + FTPTI HCSMA +IGL ++VKL P FK+
Sbjct: 70 QVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117
>sp|Q9H5X1|FA96A_HUMAN MIP18 family protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1
Length = 160
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITV---DEKLGRILITFTPTIQHCSMAAVIGL 94
++ + +R IRDPE P +LE+L V+SE + V +E+ ++I FTPT+ HCS+A +IGL
Sbjct: 39 EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 98
Query: 95 CLRVKLKEFFPPHFKVRF 112
CLRVKL+ P K+
Sbjct: 99 CLRVKLQRCLPFKHKLEI 116
>sp|P38829|YHS2_YEAST MIP18 family protein YHR122W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YHR122W PE=1 SV=1
Length = 231
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDE-----KLGRILITFTPTIQHCSMAAVI 92
+I + + I DPEHP SL QLSV++ E I V + ++ ++I TPTI HCS+A +I
Sbjct: 108 EIYDLIAHISDPEHPLSLGQLSVVNLEDIDVHDSGNQNEMAEVVIKITPTITHCSLATLI 167
Query: 93 GLCLRVKLKEFFPPHFKV 110
GL +RV+L+ PP F++
Sbjct: 168 GLGIRVRLERSLPPRFRI 185
>sp|Q9DCL2|FA96A_MOUSE MIP18 family protein FAM96A OS=Mus musculus GN=Fam96a PE=2 SV=1
Length = 160
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITV---DEKLGRILITFTPTIQHCSMAAVIGL 94
++ + +R IRDPE P +LE+L V++E + V +E ++I FTPT+ HCS+A +IGL
Sbjct: 39 EVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIKFTPTVPHCSLATLIGL 98
Query: 95 CLRVKLKEFFPPHFKVRF 112
CLRVKL+ P K+
Sbjct: 99 CLRVKLQRCLPFKHKLEI 116
>sp|Q3T0U7|FA96A_BOVIN MIP18 family protein FAM96A OS=Bos taurus GN=FAM96A PE=2 SV=1
Length = 160
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITV---DEKLGRILITFTPTIQHCSMAAVIGL 94
++ + +R IRDPE P +LE+L V++E + V +E ++I FTPT+ HCS+A +IGL
Sbjct: 39 EVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIRFTPTVPHCSLATLIGL 98
Query: 95 CLRVKLKEFFP 105
CLRVKL+ P
Sbjct: 99 CLRVKLQRCLP 109
>sp|Q9UTL0|YIVG_SCHPO MIP18 family protein C144.16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC144.16 PE=3 SV=1
Length = 179
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 38 QIVNFVRDIRDPEHPYSLEQLSVLSEESI-TVDEKLGRILIT--FTPTIQHCSMAAVIGL 94
+I + + I DPEHP +L QLSV+ E I VD G IT TPTI HCSM +IGL
Sbjct: 58 EIYDLLAKINDPEHPLTLAQLSVVKLEDIEVVDNVEGDSYITVHITPTIPHCSMCTLIGL 117
Query: 95 CLRVKLKEFFPPHFKV 110
C+RV+L+ PP F V
Sbjct: 118 CIRVRLERCLPPRFHV 133
>sp|Q9V968|U195B_DROME MIP18 family protein CG30152 OS=Drosophila melanogaster GN=CG30152
PE=1 SV=1
Length = 218
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 39 IVNFVRDIRDPEHPYSLEQLSVLSEESITV----DEKLGRILITFTPTIQHCSMAAVIGL 94
I + +R IRDPE P +LE L+V+ E+ I V + + I F PT+ HCS+A +IGL
Sbjct: 97 IYDLLRGIRDPEKPCTLEDLNVVYEDGIFVMPPTRSNVSVVRIEFNPTVPHCSLATLIGL 156
Query: 95 CLRVKLKEFFPPHFKV 110
C+RVK++ P + K+
Sbjct: 157 CIRVKVERGLPHNIKL 172
>sp|Q9GPR0|FA96A_DICDI MIP18 family protein FAM96A OS=Dictyostelium discoideum GN=fam96A
PE=3 SV=1
Length = 150
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 19/91 (20%)
Query: 39 IVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGR-------------------ILITF 79
+ + +R I+DPE P +LE+L V++E+ ITV + I I F
Sbjct: 13 VFDIIRHIKDPEFPKTLEELKVVNEDWITVIDNNDINDSDDINNNNNENYKGYCFIKILF 72
Query: 80 TPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110
PT+ HC +A I LC+R K+KE+ P K+
Sbjct: 73 QPTVPHCHLAPTIALCIREKIKEYLPKRSKI 103
>sp|Q5M2S3|SECA_STRT2 Protein translocase subunit SecA OS=Streptococcus thermophilus
(strain ATCC BAA-250 / LMG 18311) GN=secA PE=3 SV=1
Length = 849
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 16 KERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSE 63
K + RT + HS +D +L I+NF R PE SLE L + E
Sbjct: 635 KRTINRTVDGHSRNDQ-EEALKGILNFARQALVPEDAISLEDLKEVGE 681
>sp|Q5LY68|SECA_STRT1 Protein translocase subunit SecA OS=Streptococcus thermophilus
(strain CNRZ 1066) GN=secA PE=3 SV=1
Length = 849
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 16 KERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSE 63
K + RT + HS +D +L I+NF R PE SLE L + E
Sbjct: 635 KRTINRTVDGHSRNDQ-EEALKGILNFARQALVPEDAISLEDLKEVGE 681
>sp|Q03IX4|SECA_STRTD Protein translocase subunit SecA OS=Streptococcus thermophilus
(strain ATCC BAA-491 / LMD-9) GN=secA PE=3 SV=1
Length = 849
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 16 KERVPRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSE 63
K + RT + HS +D +L I+NF R PE SLE L + E
Sbjct: 635 KRTINRTVDGHSRNDQ-EEALKGILNFARQALVPEDAISLEDLKEVGE 681
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,435,368
Number of Sequences: 539616
Number of extensions: 1432078
Number of successful extensions: 3443
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3417
Number of HSP's gapped (non-prelim): 20
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)