Query 042312
Match_columns 112
No_of_seqs 118 out of 781
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3381 Uncharacterized conser 100.0 9E-34 1.9E-38 210.6 6.0 109 3-112 2-117 (161)
2 COG5133 Uncharacterized conser 99.9 6.5E-28 1.4E-32 179.7 5.0 110 2-112 1-137 (181)
3 COG2151 PaaD Predicted metal-s 99.8 6.9E-21 1.5E-25 135.4 7.9 71 33-107 12-82 (111)
4 PF01883 DUF59: Domain of unkn 99.6 5.3E-15 1.1E-19 95.4 7.4 70 38-112 3-72 (72)
5 TIGR03406 FeS_long_SufT probab 99.6 1.2E-14 2.7E-19 109.9 9.3 76 31-110 71-149 (174)
6 TIGR02159 PA_CoA_Oxy4 phenylac 99.4 2.7E-12 5.8E-17 94.7 7.5 62 46-111 1-63 (146)
7 TIGR02945 SUF_assoc FeS assemb 99.1 1.3E-09 2.9E-14 74.0 9.2 69 38-110 5-73 (99)
8 PRK11670 antiporter inner memb 98.5 7.5E-07 1.6E-11 73.5 9.1 72 33-110 12-83 (369)
9 PF01106 NifU: NifU-like domai 92.2 0.78 1.7E-05 29.5 6.1 38 73-110 27-65 (68)
10 TIGR03341 YhgI_GntY IscR-regul 83.7 4.6 9.9E-05 30.9 6.2 67 38-110 109-176 (190)
11 COG0694 Thioredoxin-like prote 82.5 5.4 0.00012 27.6 5.6 56 53-110 25-81 (93)
12 PRK11190 Fe/S biogenesis prote 80.6 12 0.00026 28.8 7.5 64 40-106 108-173 (192)
13 TIGR02000 NifU_proper Fe-S clu 80.6 6.1 0.00013 32.1 6.2 39 73-111 250-288 (290)
14 PF13192 Thioredoxin_3: Thiore 34.5 43 0.00093 21.0 2.4 24 75-102 3-26 (76)
15 COG0858 RbfA Ribosome-binding 34.4 1.1E+02 0.0023 21.8 4.7 32 45-83 25-56 (118)
16 cd00273 Chemokine_CXC Chemokin 29.5 20 0.00043 22.4 0.2 19 74-92 19-37 (64)
17 PF07381 DUF1495: Winged helix 27.3 46 0.00099 22.8 1.7 49 34-91 38-89 (90)
18 PF12876 Cellulase-like: Sugar 26.4 35 0.00075 22.2 1.0 20 38-58 46-65 (88)
19 cd05568 PTS_IIB_bgl_like PTS_I 25.3 90 0.0019 19.3 2.7 23 86-108 7-29 (85)
20 PF05768 DUF836: Glutaredoxin- 25.0 45 0.00098 21.3 1.3 18 81-98 5-22 (81)
21 PF02033 RBFA: Ribosome-bindin 24.7 2.2E+02 0.0047 18.9 6.1 60 38-104 12-78 (104)
22 PF02445 NadA: Quinolinate syn 24.1 54 0.0012 27.1 1.9 26 83-108 77-102 (296)
23 PF01446 Rep_1: Replication pr 20.6 97 0.0021 24.3 2.6 22 74-96 21-42 (233)
No 1
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9e-34 Score=210.65 Aligned_cols=109 Identities=50% Similarity=0.789 Sum_probs=97.5
Q ss_pred CCcccCCceEEeccCCC--CCcccCCCCCccchhhHHHHHHHHccCCCCCCCCCccccCceeecceeEec---CC--ceE
Q 042312 3 LGLINANPVVHAKKERV--PRTEESHSHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDE---KL--GRI 75 (112)
Q Consensus 3 ~~~~N~nP~v~~~~~~~--~~~~~~~~~~~~~i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~---~~--~~V 75 (112)
++++|.||.||.+..++ ....++++...++++++ ++|+++|+|+|||||+||+||++|+.+.|+|.+ +. ..|
T Consensus 2 s~l~N~np~v~~~~~~~~r~~~s~~d~~~~~~~~~~-~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V 80 (161)
T KOG3381|consen 2 SGLQNENPLVYPTRSRERRVTASEEDELLPDSEDAE-EIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYV 80 (161)
T ss_pred CccccCCccccccccccccccccccccccCcchhHH-HHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceEE
Confidence 56999999999976654 33556778888889999 999999999999999999999999999999864 22 479
Q ss_pred EEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceeeC
Q 042312 76 LITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF 112 (112)
Q Consensus 76 ~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~i 112 (112)
+|.||||+|||||+++||++||.||.|+||++|||+|
T Consensus 81 ~i~ftPTipHCSmaTlIGLcIrVkl~RsLp~rfkvdV 117 (161)
T KOG3381|consen 81 RITFTPTIPHCSMATLIGLCIRVKLLRSLPPRFKVDV 117 (161)
T ss_pred EEEeccCCCcchHHhhhhheeeeeeeecCCCceeEEE
Confidence 9999999999999999999999999999999999986
No 2
>COG5133 Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=6.5e-28 Score=179.74 Aligned_cols=110 Identities=41% Similarity=0.720 Sum_probs=91.8
Q ss_pred CCCcccCCceEEeccCCCCC------------------cccCC----CCCccchhhHHHHHHHHccCCCCCCCCCccccC
Q 042312 2 TLGLINANPVVHAKKERVPR------------------TEESH----SHSDDCWRSLTQIVNFVRDIRDPEHPYSLEQLS 59 (112)
Q Consensus 2 ~~~~~N~nP~v~~~~~~~~~------------------~~~~~----~~~~~~i~~~~eI~~~Lr~V~DPEiP~tivdLG 59 (112)
++++.|.||-|.+-.....+ .+-++ +++.|+||++ +||++|+.|+|||||+++.+||
T Consensus 1 ~a~~~nenpdi~e~NqlP~r~e~~~dlll~ss~e~~~piese~~~~~~ee~d~id~q-eiydLia~I~DPEHPltL~QLs 79 (181)
T COG5133 1 MAEFLNENPDIKEMNQLPFRAESEEDLLLGSSLEERHPIESENGVLQNEEPDLIDQQ-EIYDLIADIRDPEHPLTLEQLS 79 (181)
T ss_pred CccccccCcchhhhhcCCccccchhhhhcccchhhcCcccccccccccCCCCCcCHH-HHHHHHHhcCCCCCCccHhhcc
Confidence 46889999999765442111 11111 4566899999 9999999999999999999999
Q ss_pred ceeecceeEecCC-----ceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceeeC
Q 042312 60 VLSEESITVDEKL-----GRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF 112 (112)
Q Consensus 60 lV~~~~I~v~~~~-----~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~i 112 (112)
+|..++|.|.|+. ..|.|.||||+|||||+++||++||.+|.|++|++|.|+|
T Consensus 80 VV~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrleR~lpprF~v~v 137 (181)
T COG5133 80 VVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHVQV 137 (181)
T ss_pred eeeeccccccCCCCCCeeEEEEEEeccCCCchhHHHHhhhheeeeehhcCCCceeEEE
Confidence 9999999987643 2599999999999999999999999999999999998864
No 3
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=99.84 E-value=6.9e-21 Score=135.35 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCc
Q 042312 33 WRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPH 107 (112)
Q Consensus 33 i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~ 107 (112)
...+ +|+++|++|+|||+|++|++||+||+ |.+++.++.+.|.||||+||||++..|..+++.++.+. ++.
T Consensus 12 ~~~~-~i~~aL~~V~DPEi~idIvdLGLVy~--v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~-~~v 82 (111)
T COG2151 12 VTLE-DILEALKTVIDPEIGIDIVDLGLVYE--VDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEI-PGV 82 (111)
T ss_pred hhHH-HHHHHhhcCCCcccceeeEeeccEEE--EEEecCCceEEEEEecCCCCCCccHHHHHHHHHHHHhc-CCc
Confidence 4456 89999999999999999999999998 66654345899999999999999999999999999994 543
No 4
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=99.59 E-value=5.3e-15 Score=95.35 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=60.1
Q ss_pred HHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceeeC
Q 042312 38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVRF 112 (112)
Q Consensus 38 eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~i 112 (112)
+|+++|++|.||+.+.+|++||+|++ |.+. ++.|.|.|++++|+||+...|..+++.+|. ++|+.-+|.|
T Consensus 3 ~V~~aL~~v~dP~~~~~iv~~g~V~~--i~i~--~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~-~l~gv~~V~V 72 (72)
T PF01883_consen 3 AVRDALKQVKDPELGKDIVELGMVRD--ISIE--GGKVSVSLELPTPACPAAEPLREEIREALK-ALPGVKSVKV 72 (72)
T ss_dssp HHHHHHTT-BETTTSSBTTTTTSEEE--EEEC--TCEEEEEE--SSTTHTTHHHHHHHHHHHHH-TSTT-SEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHcCCeeE--EEEE--CCEEEEEEEECCCCchHHHHHHHHHHHHHH-hCCCCceEeC
Confidence 89999999999999999999999998 6774 478999999999999999999999999999 6898766654
No 5
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=99.58 E-value=1.2e-14 Score=109.87 Aligned_cols=76 Identities=24% Similarity=0.241 Sum_probs=64.3
Q ss_pred cchhhHHHHHHHHccCCCCCCCCCccccCceeecceeEec---CCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCc
Q 042312 31 DCWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDE---KLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPH 107 (112)
Q Consensus 31 ~~i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~---~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~ 107 (112)
++..++ +||++|++|+|||+|.+|++||+||+ |.+.+ ++..|.|.||+|+|+|+|...|..+++.+|.. +++.
T Consensus 71 ~~~~ee-~V~eaL~tV~DPei~~nIVeLGlV~~--I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~-l~gV 146 (174)
T TIGR03406 71 GEDNED-QVWEQLRTVYDPEIPVNIVDLGLVYG--CRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLA-VPNV 146 (174)
T ss_pred ccccHH-HHHHHHcCCCCCCCCCChHHcCCeEE--EEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCc
Confidence 445566 89999999999999999999999998 56654 22379999999999999999999999999976 5664
Q ss_pred cee
Q 042312 108 FKV 110 (112)
Q Consensus 108 ~kv 110 (112)
-++
T Consensus 147 ~~V 149 (174)
T TIGR03406 147 DEV 149 (174)
T ss_pred eeE
Confidence 444
No 6
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.35 E-value=2.7e-12 Score=94.75 Aligned_cols=62 Identities=31% Similarity=0.525 Sum_probs=52.2
Q ss_pred CCCCCCC-CCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312 46 IRDPEHP-YSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR 111 (112)
Q Consensus 46 V~DPEiP-~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~ 111 (112)
|.|||+| .||++||+|++ |.+.+ +.|.|++|||++|||+...|..+|+.+|.+..-..++|+
T Consensus 1 v~DPEi~~~sIvdLG~Vr~--V~v~g--d~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~Gv~~V~V~ 63 (146)
T TIGR02159 1 VPDPEIPVVSVTDLGMVRE--VDVDG--GGVVVKFTPTYSGCPALEVIRQDIRDAVRALGVEVVEVS 63 (146)
T ss_pred CcCCCCCCCCchhcCCeeE--EEEEC--CEEEEEEEeCCCCCchHHHHHHHHHHHHHhcCCCeEEEe
Confidence 6899999 89999999997 66643 479999999999999999999999999988533334443
No 7
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=99.08 E-value=1.3e-09 Score=74.00 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=59.6
Q ss_pred HHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCccee
Q 042312 38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110 (112)
Q Consensus 38 eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv 110 (112)
+|.++|+++.||+++.+|+++|.|++ |.+.+ ++.|.|.+++++|+||+...+...++.+|.. +++.-++
T Consensus 5 ~I~~~L~~v~dP~l~~~lv~~g~V~~--i~v~~-~~~v~i~l~l~~p~~~~~~~l~~~i~~al~~-l~gv~~v 73 (99)
T TIGR02945 5 AVIEALKTVYDPEIPVNIYELGLIYD--IDVDD-DGHVDIQMTLTAPNCPVAGSMPGEVENAVRA-VPGVGSV 73 (99)
T ss_pred HHHHHHcCCCCCCCCCCeecCCCeeE--EEECC-CCeEEEEEEECCCCCChHHHHHHHHHHHHHh-CCCCceE
Confidence 89999999999999999999999987 66642 2579999999999999999999999999977 5554333
No 8
>PRK11670 antiporter inner membrane protein; Provisional
Probab=98.50 E-value=7.5e-07 Score=73.53 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCccee
Q 042312 33 WRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110 (112)
Q Consensus 33 i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv 110 (112)
...+ +|.++|+.|.||+.+-+|++||+|.+ |.+. ++.|.+.++.|+++||+...+..+++.+|.+ +++.-++
T Consensus 12 ~~~~-~v~~~l~~v~~p~~~~~~~~~~~v~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (369)
T PRK11670 12 ALRA-MVAGTLANFQHPTLKHNLTTLKALHH--VALL--DDTLHIELVMPFVWNSAFEELKEQCSAELLR-ITGAKAI 83 (369)
T ss_pred chHH-HHHHHHhcCCCCCCCCChhhhCCeeE--EEEe--CCEEEEEEEECCCCchHHHHHHHHHHHHHHh-cCCCceE
Confidence 4456 99999999999999999999999987 6664 3579999999999999999999999999987 6664333
No 9
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=92.22 E-value=0.78 Score=29.54 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=31.8
Q ss_pred ceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312 73 GRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV 110 (112)
Q Consensus 73 ~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv 110 (112)
+.|+|.|+=.-.|||+++. +...|+.+|++.+|...+|
T Consensus 27 ~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V 65 (68)
T PF01106_consen 27 GVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRV 65 (68)
T ss_dssp TEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEE
T ss_pred CEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceE
Confidence 3899999999999999965 4489999999999987665
No 10
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=83.75 E-value=4.6 Score=30.90 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=43.7
Q ss_pred HHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312 38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV 110 (112)
Q Consensus 38 eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv 110 (112)
+|-++|..-.- |.=--+=|=|.- +.+.+ ++.|.|.|+=.-.|||++.. +...|+.+|++.+|..-+|
T Consensus 109 ~i~~~l~~~ir---P~l~~dGGdiel--v~v~~-~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V 176 (190)
T TIGR03341 109 RINYVLQSEIN---PQLASHGGKVTL--VEITD-DGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGV 176 (190)
T ss_pred HHHHHHHhccC---HHHHhcCCceEE--EEEcC-CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceE
Confidence 45555542222 333344454444 23432 35789999999999999965 5568999999988876555
No 11
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=82.51 E-value=5.4 Score=27.61 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=38.7
Q ss_pred CCccccCceeecceeEecCCceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312 53 YSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV 110 (112)
Q Consensus 53 ~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv 110 (112)
.=..|=|=|.- +.++..++.|.+.|-=.-.|||+++. +...|++.|+..+|+..+|
T Consensus 25 ~l~~dGGdve~--~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V 81 (93)
T COG0694 25 QLAMDGGDVEL--VGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEV 81 (93)
T ss_pred ceeccCCeEEE--EEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceE
Confidence 33444444443 33444356799999999999999976 4555999998888876555
No 12
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=80.63 E-value=12 Score=28.75 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=40.9
Q ss_pred HHHHccCCCCCC-CCCccccCceeecceeEecCCceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCC
Q 042312 40 VNFVRDIRDPEH-PYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPP 106 (112)
Q Consensus 40 ~~~Lr~V~DPEi-P~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~ 106 (112)
++.++.+.|=++ |.=--+=|=|.- +.+. +++.|.|.|+=.-.|||+++. +...|+..|++.+|+
T Consensus 108 ~~~i~~~l~~~irP~l~~dGGdiel--v~v~-~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~ 173 (192)
T PRK11190 108 MERVEYVLQSQINPQLAGHGGRVSL--MEIT-EDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPG 173 (192)
T ss_pred HHHHHHHHHhccChhHHhcCCcEEE--EEEc-CCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCH
Confidence 334444444333 333344444443 2343 235789999999999999965 555999999998883
No 13
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=80.56 E-value=6.1 Score=32.11 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=33.6
Q ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312 73 GRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR 111 (112)
Q Consensus 73 ~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~ 111 (112)
+.|.|.|+=.-.|||++..=...|+.+|++.+|...+|.
T Consensus 250 ~~v~v~l~GaC~gC~~s~~Tl~~Ie~~l~~~~p~~~~V~ 288 (290)
T TIGR02000 250 KIVYVVLTGACSGCSMSTMTLKGIQQRLRERLGEFVVVE 288 (290)
T ss_pred CEEEEEEeeCCCCCcchHHHHHHHHHHHHHhCCCceEEE
Confidence 579999999999999997766669999999999877664
No 14
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=34.50 E-value=43 Score=21.01 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=13.1
Q ss_pred EEEEEeecCCCCchHHHHHHHHHHHHHH
Q 042312 75 ILITFTPTIQHCSMAAVIGLCLRVKLKE 102 (112)
Q Consensus 75 V~V~~TpT~p~Cp~~~~I~~~i~~~L~~ 102 (112)
|.| ++++ ||.-+.....++..+.+
T Consensus 3 I~v-~~~~---C~~C~~~~~~~~~~~~~ 26 (76)
T PF13192_consen 3 IKV-FSPG---CPYCPELVQLLKEAAEE 26 (76)
T ss_dssp EEE-ECSS---CTTHHHHHHHHHHHHHH
T ss_pred EEE-eCCC---CCCcHHHHHHHHHHHHh
Confidence 445 5554 55555555556655555
No 15
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=34.36 E-value=1.1e+02 Score=21.76 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=23.8
Q ss_pred cCCCCCCCCCccccCceeecceeEecCCceEEEEEeecC
Q 042312 45 DIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTI 83 (112)
Q Consensus 45 ~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~ 83 (112)
.|+||-++.-. |.+ |+++.+....+|.+|+-.
T Consensus 25 eikDprl~~~~-----Vt~--V~vS~Dl~~A~Vyvt~l~ 56 (118)
T COG0858 25 EIKDPRLGLVT-----VTD--VEVSKDLSHAKVYVTVLG 56 (118)
T ss_pred HccCCCcCceE-----EEE--EEEcCCCceEEEEEEecC
Confidence 59999987433 665 677777778999998744
No 16
>cd00273 Chemokine_CXC Chemokine_CXC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif which may be a general requirement for binding to CXC chemokine receptors; those with the ELR motif are chemotatic for neutrophils and have been shown to be angiogenic, while those without the motif act on T and B cells, and are typically angiostatic; exist as monomers and dimers, but are believed to be functional as monomers; found only in vertebrates and a few viruses. See CDs: Chemokine (cd00169) for the general alignment of chemokines, or Chemokine_CC (cd00272), Chemokine_C (cd00271), and Chemokine_CX3C (cd00274) for the additional chemokine subgroups.
Probab=29.52 E-value=20 Score=22.38 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=14.7
Q ss_pred eEEEEEeecCCCCchHHHH
Q 042312 74 RILITFTPTIQHCSMAAVI 92 (112)
Q Consensus 74 ~V~V~~TpT~p~Cp~~~~I 92 (112)
...+.++||+++||-..+|
T Consensus 19 I~~~~~~~~~~~C~~~~VI 37 (64)
T cd00273 19 IKKLEVIPPGPHCPNTEII 37 (64)
T ss_pred eeEEEEECCCCCCCCceEE
Confidence 4566779999999977655
No 17
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=27.26 E-value=46 Score=22.82 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=31.4
Q ss_pred hhHHHHHHHHccC---CCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHH
Q 042312 34 RSLTQIVNFVRDI---RDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAV 91 (112)
Q Consensus 34 ~~~~eI~~~Lr~V---~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~ 91 (112)
+.. .|+-+|+.. ++.| .+|+.||||..+ + ...+ .+ .+++|-.|+-++..
T Consensus 38 ~~s-nV~GaL~G~g~rY~~e--~SLv~lGLV~~~-~--~~~g--~k-~Y~lT~~G~~~~~~ 89 (90)
T PF07381_consen 38 DYS-NVLGALRGDGKRYNKE--DSLVGLGLVEEE-E--EKGG--FK-YYRLTEKGKRIAEM 89 (90)
T ss_pred CHH-HHHHHHhcCCCCcCcc--hhHHHcCCeeEe-e--ecCC--ee-EEEeChhhhhHHhc
Confidence 444 677788764 4444 699999999332 2 2222 33 88888888876543
No 18
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=26.40 E-value=35 Score=22.23 Aligned_cols=20 Identities=20% Similarity=0.518 Sum_probs=12.2
Q ss_pred HHHHHHccCCCCCCCCCcccc
Q 042312 38 QIVNFVRDIRDPEHPYSLEQL 58 (112)
Q Consensus 38 eI~~~Lr~V~DPEiP~tivdL 58 (112)
+++..+|.+ ||.+|++.--.
T Consensus 46 ~~~~~iR~~-dP~~pvt~g~~ 65 (88)
T PF12876_consen 46 EAFRWIRAV-DPSQPVTSGFW 65 (88)
T ss_dssp HHHHHHHTT--TTS-EE--B-
T ss_pred HHHHHHHHh-CCCCcEEeecc
Confidence 678888887 99999876433
No 19
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=25.28 E-value=90 Score=19.27 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=18.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCcc
Q 042312 86 CSMAAVIGLCLRVKLKEFFPPHF 108 (112)
Q Consensus 86 Cp~~~~I~~~i~~~L~~~lp~~~ 108 (112)
|+.+.....-++.+|++.++...
T Consensus 7 C~~G~~~s~~l~~~l~~~~~~~~ 29 (85)
T cd05568 7 CPSGIGTSRLLKSKLKKLFPEIE 29 (85)
T ss_pred CCCCHHHHHHHHHHHHHHCCCce
Confidence 88888888889999998887644
No 20
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=25.04 E-value=45 Score=21.29 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=12.9
Q ss_pred ecCCCCchHHHHHHHHHH
Q 042312 81 PTIQHCSMAAVIGLCLRV 98 (112)
Q Consensus 81 pT~p~Cp~~~~I~~~i~~ 98 (112)
.|.|||++-......++.
T Consensus 5 ~~k~~C~LC~~a~~~L~~ 22 (81)
T PF05768_consen 5 YTKPGCHLCDEAKEILEE 22 (81)
T ss_dssp EE-SSSHHHHHHHHHHHH
T ss_pred EcCCCCChHHHHHHHHHH
Confidence 478999988877666665
No 21
>PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A.
Probab=24.71 E-value=2.2e+02 Score=18.94 Aligned_cols=60 Identities=13% Similarity=0.219 Sum_probs=36.6
Q ss_pred HHHHHHcc-CCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHH------HHHHHHHHHhC
Q 042312 38 QIVNFVRD-IRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIG------LCLRVKLKEFF 104 (112)
Q Consensus 38 eI~~~Lr~-V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~------~~i~~~L~~~l 104 (112)
++-++|.. +.||.+ +.|.-.+|++..+...++|.++...++......+. ..+|..|.+.+
T Consensus 12 ~i~~il~~~~~d~~l-------~~vtIt~V~ls~Dl~~a~Vy~~~~~~~~~~~~~~~~L~~~~~~iR~~l~~~l 78 (104)
T PF02033_consen 12 EISEILQREIKDPRL-------KLVTITRVELSPDLSHAKVYVSILGDEEEQEEVLEALNKAAGFIRHELAKRL 78 (104)
T ss_dssp HHHHHHCTCTSSCGH-------HCEEEEEEEECTTSSEEEEEEEESSSHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHhhccCcCc-------ceEEEEEEEECCCCCEEEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666666 888887 23332336777777889999988765554443322 23555555544
No 22
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=24.09 E-value=54 Score=27.12 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=13.3
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCcc
Q 042312 83 IQHCSMAAVIGLCLRVKLKEFFPPHF 108 (112)
Q Consensus 83 ~p~Cp~~~~I~~~i~~~L~~~lp~~~ 108 (112)
..||||++.+..+--.++++..|+..
T Consensus 77 ~AgC~MAdm~~~~~v~~~k~~~p~~~ 102 (296)
T PF02445_consen 77 EAGCPMADMATAEDVRELKEEYPDAA 102 (296)
T ss_dssp -------TT--HHHHHHHHHHSTTS-
T ss_pred CCCCchhhhCCHHHHHHHHHHCCCCe
Confidence 58999999999888888888877654
No 23
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=20.63 E-value=97 Score=24.34 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=15.1
Q ss_pred eEEEEEeecCCCCchHHHHHHHH
Q 042312 74 RILITFTPTIQHCSMAAVIGLCL 96 (112)
Q Consensus 74 ~V~V~~TpT~p~Cp~~~~I~~~i 96 (112)
.--+-+|+|.++|+ ++.+...+
T Consensus 21 ~~~~flTLT~~n~~-~~~L~~~l 42 (233)
T PF01446_consen 21 GRFIFLTLTVKNCK-GDELRDTL 42 (233)
T ss_pred CeEEEEEeCCCCCC-cchHHHHH
Confidence 34677999999999 44444443
Done!