Query 042312
Match_columns 112
No_of_seqs 118 out of 781
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ux2_A MIP18 family protein FA 100.0 1.4E-29 4.7E-34 183.1 6.8 79 33-112 8-89 (130)
2 3lno_A Putative uncharacterize 99.8 4.3E-19 1.5E-23 122.5 5.9 76 32-111 7-82 (108)
3 1uwd_A Hypothetical protein TM 99.7 9.8E-18 3.3E-22 114.2 7.7 74 33-111 6-79 (103)
4 3cq1_A Putative uncharacterize 99.7 2E-17 7E-22 112.8 7.5 72 34-111 7-78 (103)
5 1xhj_A Nitrogen fixation prote 91.9 0.46 1.6E-05 31.5 5.9 39 72-110 37-76 (88)
6 1veh_A NIFU-like protein hirip 86.8 0.61 2.1E-05 31.1 3.4 38 73-110 45-83 (92)
7 2z51_A NIFU-like protein 2, ch 74.8 2.9 9.8E-05 30.1 3.6 38 73-110 35-73 (154)
8 2dyj_A Ribosome-binding factor 53.6 42 0.0014 21.7 6.2 39 38-83 15-53 (95)
9 1th5_A NIFU1; iron-sulfur clus 41.9 18 0.00061 22.9 2.5 35 73-110 36-70 (74)
10 2z51_A NIFU-like protein 2, ch 30.5 71 0.0024 22.6 4.4 37 72-111 116-152 (154)
11 1jos_A RBFA, ribosome-binding 30.4 1.1E+02 0.0037 20.7 5.2 39 38-83 18-57 (128)
12 1mi2_A Macrophage inflammatory 29.7 7.2 0.00025 24.1 -0.9 18 75-92 24-41 (73)
13 2hdl_A Small inducible cytokin 27.3 8.7 0.0003 24.4 -0.8 18 75-92 19-36 (78)
14 1f9q_A Platelet factor 4; bloo 23.5 13 0.00044 22.8 -0.6 18 75-92 25-42 (70)
15 1mgs_A Human melanoma growth s 23.4 14 0.00046 22.8 -0.5 19 74-92 23-41 (73)
16 1tvx_A NAP-2, neutrophil activ 23.1 13 0.00046 23.1 -0.5 18 75-92 25-42 (75)
17 2r3z_A CXCL10, small-inducible 22.4 42 0.0014 20.3 1.7 18 75-92 25-42 (68)
18 1lv9_A Small inducible cytokin 21.6 49 0.0017 20.4 1.9 18 75-92 25-42 (77)
19 1ic9_A TH10AOX; three stranded 20.5 43 0.0015 17.6 1.2 10 79-88 10-19 (29)
No 1
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=99.96 E-value=1.4e-29 Score=183.07 Aligned_cols=79 Identities=46% Similarity=0.844 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHccCCCCCCCCCccccCceeecceeE---ecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcce
Q 042312 33 WRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITV---DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFK 109 (112)
Q Consensus 33 i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v---~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~k 109 (112)
.+++ +||++||+|+|||||+||+|||+||+++|.+ .++++.|.|+||||+|||||+++|+++||.||.+++|++||
T Consensus 8 ~~~~-eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~k 86 (130)
T 3ux2_A 8 EKAL-EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHK 86 (130)
T ss_dssp HHHH-HHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCC
T ss_pred ccHH-HHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceE
Confidence 3567 9999999999999999999999999988875 33456799999999999999999999999999999999999
Q ss_pred eeC
Q 042312 110 VRF 112 (112)
Q Consensus 110 v~i 112 (112)
|+|
T Consensus 87 V~v 89 (130)
T 3ux2_A 87 LEI 89 (130)
T ss_dssp CCC
T ss_pred EEE
Confidence 985
No 2
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=99.77 E-value=4.3e-19 Score=122.54 Aligned_cols=76 Identities=22% Similarity=0.230 Sum_probs=66.2
Q ss_pred chhhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312 32 CWRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR 111 (112)
Q Consensus 32 ~i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~ 111 (112)
.++++ +|+++|++|.|||+|.+|++||+||+ |.+.+ ++.|.|.||+|+||||+...|..+++.+|.+.+|+..+|+
T Consensus 7 ~~~~~-~V~~aL~~V~DPe~~~~Iv~lG~V~~--I~v~~-~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~ 82 (108)
T 3lno_A 7 EAFEN-KLYANLEAVIDPELGVDIVNLGLVYD--VTADE-NNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIE 82 (108)
T ss_dssp HHHHH-HHHHHGGGCEETTTTEEHHHHTCEEE--EEECT-TCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred hhhHH-HHHHHHcCCCCCCCCCCHHHcCCceE--EEECC-CCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEE
Confidence 35667 99999999999999999999999997 66743 3579999999999999999999999999955588876654
No 3
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=99.73 E-value=9.8e-18 Score=114.23 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312 33 WRSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR 111 (112)
Q Consensus 33 i~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~ 111 (112)
++++ +|+++|++|.|||+|.+|++||+||+ |.+++ ++.|.|.||+|+||||+...|..+++.+|.+ +++.-+++
T Consensus 6 ~~~~-~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~-~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~-l~gv~~v~ 79 (103)
T 1uwd_A 6 VTKE-DVLNALKNVIDFELGLDVVSLGLVYD--IQIDD-QNNVKVLMTMTTPMCPLAGMILSDAEEAIKK-IEGVNNVE 79 (103)
T ss_dssp CCHH-HHHHHHTTCBCTTTSSBTTTTTCCCC--EEECT-TCEEEEEECCSSSCCSSHHHHHHHHHHHHHT-SSSCCEEE
T ss_pred chHH-HHHHHHcCCCCCCCCcChhhcCCeeE--EEEcC-CCEEEEEEEECCCCCcHHHHHHHHHHHHHHh-CCCcceEE
Confidence 3456 89999999999999999999999997 67743 3589999999999999999999999999975 67655544
No 4
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=99.71 E-value=2e-17 Score=112.78 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=63.2
Q ss_pred hhHHHHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312 34 RSLTQIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR 111 (112)
Q Consensus 34 ~~~~eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~ 111 (112)
.++ +|+++|++|.|||+|.+|++||+||+ |.+++ +.|.|.||+|+||||+...|..+++.+|.+ +++.-+++
T Consensus 7 ~~~-~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~--~~V~v~l~lt~~~cp~~~~l~~~i~~al~~-l~gv~~V~ 78 (103)
T 3cq1_A 7 LEA-QAWALLEAVYDPELGLDVVNLGLIYD--LVVEP--PRAYVRMTLTTPGCPLHDSLGEAVRQALSR-LPGVEEVE 78 (103)
T ss_dssp HHH-HHHHHHTTCBCTTTCSBTTTTTCEEE--EEEET--TEEEEEECCSSSSCCSSCHHHHHHHHHHHT-STTCCEEE
T ss_pred HHH-HHHHHHhCCCCCCCCcCchhcCceEE--EEEEC--CEEEEEEEECCCCCcHHHHHHHHHHHHHHh-CCCceeEE
Confidence 456 89999999999999999999999997 66653 489999999999999999999999999975 67765554
No 5
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=91.86 E-value=0.46 Score=31.47 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=32.8
Q ss_pred CceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312 72 LGRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV 110 (112)
Q Consensus 72 ~~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv 110 (112)
++.|.|.|+=.-.|||+++. +...|+.+|++.+|.--.|
T Consensus 37 ~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V 76 (88)
T 1xhj_A 37 DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEV 76 (88)
T ss_dssp SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEE
T ss_pred CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEE
Confidence 46899999999999999976 6779999999988775544
No 6
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=86.79 E-value=0.61 Score=31.07 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=32.3
Q ss_pred ceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312 73 GRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV 110 (112)
Q Consensus 73 ~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv 110 (112)
+.|.|.|+=.-.|||+++. +...|+.+|++.+|..-+|
T Consensus 45 g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V 83 (92)
T 1veh_A 45 GIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGV 83 (92)
T ss_dssp TEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCE
T ss_pred CEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEE
Confidence 5799999999999999976 6679999999998876554
No 7
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=74.81 E-value=2.9 Score=30.09 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=32.0
Q ss_pred ceEEEEEeecCCCCchHHH-HHHHHHHHHHHhCCCccee
Q 042312 73 GRILITFTPTIQHCSMAAV-IGLCLRVKLKEFFPPHFKV 110 (112)
Q Consensus 73 ~~V~V~~TpT~p~Cp~~~~-I~~~i~~~L~~~lp~~~kv 110 (112)
+.|.|.|+=.-.|||+++. +...|+.+|++.+|...+|
T Consensus 35 ~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V 73 (154)
T 2z51_A 35 NVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAV 73 (154)
T ss_dssp TEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred CEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEE
Confidence 5799999999999999865 7779999999998876554
No 8
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=53.65 E-value=42 Score=21.67 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=27.1
Q ss_pred HHHHHHccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecC
Q 042312 38 QIVNFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTI 83 (112)
Q Consensus 38 eI~~~Lr~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~ 83 (112)
++-++|+.+.||-++ .|.-.+|++..+....+|.++...
T Consensus 15 ~ls~il~ei~Dprl~-------~vtVt~V~vs~Dl~~AkVyvs~~~ 53 (95)
T 2dyj_A 15 ALAEEIQALEDPRLF-------LLTVEAVRLSKDGSVLSVYVEAFR 53 (95)
T ss_dssp HHHHHHHTCCCGGGT-------TCEEEEEEECTTSSEEEEEEECSS
T ss_pred HHHHHHHHhcCcccC-------cEEEEEEEECCCCCEEEEEEEeCC
Confidence 566667889999774 223223677777788999998654
No 9
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=41.92 E-value=18 Score=22.87 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=28.0
Q ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCccee
Q 042312 73 GRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKV 110 (112)
Q Consensus 73 ~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv 110 (112)
+.|.|.|+=.-.|| ..+...|+.+|++.+|..-+|
T Consensus 36 g~V~v~l~GaC~gc---~Tlk~gIe~~L~~~vpei~~V 70 (74)
T 1th5_A 36 PIVKVRLTGPAAVV---RTVRIAVSKKLREKIPSIQIV 70 (74)
T ss_dssp TEEEECCCSSSSSS---SSHHHHHHHHHHHHCTTCSEE
T ss_pred CEEEEEEecCCcch---HHHHHHHHHHHHHHCCCCcEE
Confidence 57888888777778 467888999999988876555
No 10
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=30.51 E-value=71 Score=22.65 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=28.3
Q ss_pred CceEEEEEeecCCCCchHHHHHHHHHHHHHHhCCCcceee
Q 042312 72 LGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKVR 111 (112)
Q Consensus 72 ~~~V~V~~TpT~p~Cp~~~~I~~~i~~~L~~~lp~~~kv~ 111 (112)
++.|+|.|+=.-.|| ..+...|+.+|++.+|.--+|.
T Consensus 116 ~~~v~v~l~Gac~~~---~Tlk~~Ie~~l~e~vP~i~~V~ 152 (154)
T 2z51_A 116 DPIVKIRITGPAAGV---MTVRVAVTQKLREKIPSIAAVQ 152 (154)
T ss_dssp TTEEEEEEESGGGGC---HHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEEEEecCCccc---HhHHHHHHHHHHHHCCCccEEE
Confidence 467899998665555 5678889999999999876654
No 11
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=30.42 E-value=1.1e+02 Score=20.67 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=27.5
Q ss_pred HHHHHH-ccCCCCCCCCCccccCceeecceeEecCCceEEEEEeecC
Q 042312 38 QIVNFV-RDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTI 83 (112)
Q Consensus 38 eI~~~L-r~V~DPEiP~tivdLGlV~~~~I~v~~~~~~V~V~~TpT~ 83 (112)
++-++| +.+.||-++ .|.--+|.+..+....+|.+|...
T Consensus 18 ~ls~il~~eikDprl~-------~vtVt~V~vS~Dl~~AkVyvs~~g 57 (128)
T 1jos_A 18 EIAVILQREVKDPRIG-------MVTVSDVEVSSDLSYAKIFVTFLF 57 (128)
T ss_dssp HHHHHHHHHCCCTTTC-------CEEEEEEEECTTSCEEEEEEEESC
T ss_pred HHHHHHHHHccCCccC-------ceEEeEEEECCCCCEEEEEEEeCC
Confidence 455555 789999764 333334777777788999999875
No 12
>1mi2_A Macrophage inflammatory protein-2; MIP-2, chemokine, cytokine; NMR {Mus musculus} SCOP: d.9.1.1 PDB: 3n52_A
Probab=29.70 E-value=7.2 Score=24.14 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=13.2
Q ss_pred EEEEEeecCCCCchHHHH
Q 042312 75 ILITFTPTIQHCSMAAVI 92 (112)
Q Consensus 75 V~V~~TpT~p~Cp~~~~I 92 (112)
..+.++|++++||...+|
T Consensus 24 ~~y~~~~~~~~C~~~aVI 41 (73)
T 1mi2_A 24 QSLSVTPPGPHCAQTEVI 41 (73)
T ss_dssp CBEEEECCCTTTCSCEEE
T ss_pred EEEEEEcCCCCCCCcEEE
Confidence 456688999999975544
No 13
>2hdl_A Small inducible cytokine B14; CXCL14, BRAK, chemokine; NMR {Homo sapiens}
Probab=27.26 E-value=8.7 Score=24.40 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=13.2
Q ss_pred EEEEEeecCCCCchHHHH
Q 042312 75 ILITFTPTIQHCSMAAVI 92 (112)
Q Consensus 75 V~V~~TpT~p~Cp~~~~I 92 (112)
..+.+.||+++||...+|
T Consensus 19 ~~~~~~~~~~~C~~~~VI 36 (78)
T 2hdl_A 19 KKLEMKPKYPHCEEKMVI 36 (78)
T ss_dssp EEEEECCSSTTSSSCCEE
T ss_pred eEEEEEeCCCCCCCcEEE
Confidence 567788899999865443
No 14
>1f9q_A Platelet factor 4; blood clotting; 2.00A {Homo sapiens} SCOP: d.9.1.1 PDB: 1rhp_A 1f9s_A 1f9r_A 1pfm_A 1pfn_A 1plf_A
Probab=23.53 E-value=13 Score=22.84 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=13.4
Q ss_pred EEEEEeecCCCCchHHHH
Q 042312 75 ILITFTPTIQHCSMAAVI 92 (112)
Q Consensus 75 V~V~~TpT~p~Cp~~~~I 92 (112)
..+.+.+|+++||...+|
T Consensus 25 ~~~~~~~~~~~C~~~~VI 42 (70)
T 1f9q_A 25 TSLEVIKAGPHCPTAQLI 42 (70)
T ss_dssp EEEEEECCBTTBSSCEEE
T ss_pred EEEEEEeCCCCCCCCEEE
Confidence 457788899999965443
No 15
>1mgs_A Human melanoma growth stimulatory activity; chemokine(growth factor); NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1msg_A 1msh_A 1qnk_A
Probab=23.41 E-value=14 Score=22.84 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=13.4
Q ss_pred eEEEEEeecCCCCchHHHH
Q 042312 74 RILITFTPTIQHCSMAAVI 92 (112)
Q Consensus 74 ~V~V~~TpT~p~Cp~~~~I 92 (112)
...+.+.+|+++||...+|
T Consensus 23 i~~y~~~~~~~~C~~~aVI 41 (73)
T 1mgs_A 23 IQSVNVKSPGPHCAQTEVI 41 (73)
T ss_dssp EEEEEEECCCSSCSSCEEE
T ss_pred EEEEEEEcCCCCCCCCEEE
Confidence 4566777899999875443
No 16
>1tvx_A NAP-2, neutrophil activating peptide 2 variant; cytokine; 1.75A {Homo sapiens} SCOP: d.9.1.1 PDB: 1nap_A
Probab=23.07 E-value=13 Score=23.11 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=13.0
Q ss_pred EEEEEeecCCCCchHHHH
Q 042312 75 ILITFTPTIQHCSMAAVI 92 (112)
Q Consensus 75 V~V~~TpT~p~Cp~~~~I 92 (112)
..+.+.+|+++||...+|
T Consensus 25 ~~~~~~~~~~~C~~~~VI 42 (75)
T 1tvx_A 25 QSLEVIGKGTHCNQVEVI 42 (75)
T ss_dssp EEEEEECCBTTBCSCEEE
T ss_pred EEEEEEeCCCCCCCCEEE
Confidence 457788899999865433
No 17
>2r3z_A CXCL10, small-inducible cytokine B10; IP-10/CXCL10, chemokine, chemotaxis, inflammatory response, attractant; 2.50A {Mus musculus}
Probab=22.36 E-value=42 Score=20.27 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=13.6
Q ss_pred EEEEEeecCCCCchHHHH
Q 042312 75 ILITFTPTIQHCSMAAVI 92 (112)
Q Consensus 75 V~V~~TpT~p~Cp~~~~I 92 (112)
..+.+.+|+++||...+|
T Consensus 25 ~~~~~~~~~~~C~~~~VI 42 (68)
T 2r3z_A 25 GKLEIIPASLSCPRVEII 42 (68)
T ss_dssp CEEEEECCCSSSSSCEEE
T ss_pred EEEEEEeCCCCCCCCEEE
Confidence 556788999999975544
No 18
>1lv9_A Small inducible cytokine B10; chemokine; HET: MLE; NMR {Synthetic} SCOP: d.9.1.1 PDB: 1o7y_A 1o7z_A 1o80_A
Probab=21.60 E-value=49 Score=20.42 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=13.5
Q ss_pred EEEEEeecCCCCchHHHH
Q 042312 75 ILITFTPTIQHCSMAAVI 92 (112)
Q Consensus 75 V~V~~TpT~p~Cp~~~~I 92 (112)
..+.+.+|+++||...+|
T Consensus 25 ~~~~~~~~~~~C~~~~VI 42 (77)
T 1lv9_A 25 EKLEIIPASQFCPRVEII 42 (77)
T ss_dssp SEEEEEECCSSCSSEEEE
T ss_pred EEEEEEeCCCCCCCCEEE
Confidence 456788999999965544
No 19
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=20.51 E-value=43 Score=17.57 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=7.6
Q ss_pred EeecCCCCch
Q 042312 79 FTPTIQHCSM 88 (112)
Q Consensus 79 ~TpT~p~Cp~ 88 (112)
+|.-.||||-
T Consensus 10 ytfrgpgcpt 19 (29)
T 1ic9_A 10 YTFRGPGCPT 19 (29)
T ss_dssp EEEECSCCCC
T ss_pred eeecCCCCCc
Confidence 5667899984
Done!