BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042316
MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV
SSNNKVREEKAKQSEESMRKVIYLSSWGPY

High Scoring Gene Products

Symbol, full name Information P value
AT4G10270 protein from Arabidopsis thaliana 2.8e-18
AT4G10265 protein from Arabidopsis thaliana 7.7e-16
AT4G33560 protein from Arabidopsis thaliana 4.7e-09
AT2G14070 protein from Arabidopsis thaliana 6.7e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042316
        (90 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2122799 - symbol:AT4G10270 "AT4G10270" species...   221  2.8e-18   1
TAIR|locus:1005716386 - symbol:AT4G10265 "AT4G10265" spec...   198  7.7e-16   1
TAIR|locus:2134188 - symbol:AT4G33560 "AT4G33560" species...   134  4.7e-09   1
TAIR|locus:2053395 - symbol:AT2G14070 "AT2G14070" species...   106  6.7e-06   1


>TAIR|locus:2122799 [details] [associations]
            symbol:AT4G10270 "AT4G10270" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009611 "response to wounding"
            evidence=ISS] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AF096373
            EMBL:AL049488 EMBL:AL161517 HOGENOM:HOG000238802 InterPro:IPR022251
            Pfam:PF12609 EMBL:AY085799 EMBL:BT025023 IPI:IPI00528638 PIR:T01970
            RefSeq:NP_192765.1 UniGene:At.48840 UniGene:At.69678 STRING:O82615
            EnsemblPlants:AT4G10270.1 GeneID:826619 KEGG:ath:AT4G10270
            TAIR:At4g10270 eggNOG:NOG308375 InParanoid:O82615 OMA:NYILRSV
            PhylomeDB:O82615 ProtClustDB:CLSN2685669 ArrayExpress:O82615
            Genevestigator:O82615 Uniprot:O82615
        Length = 90

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 43/90 (47%), Positives = 57/90 (63%)

Query:     1 MSSTSRAWMVAASVAAVEVLKDQ-GFCRWNYPIRLIHQHAKNSLRXXXXXXXXXXXXXXX 59
             MSSTS+AW VA S+ AVE LKDQ G CRWNY +R ++QH +N++R               
Sbjct:     1 MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query:    60 XXXNNKVREEKAKQSEESMRKVIYLSSWGP 89
                ++    EKAK++EES+R V+YLS WGP
Sbjct:    61 AVTSSG-ESEKAKKAEESLRTVMYLSCWGP 89


>TAIR|locus:1005716386 [details] [associations]
            symbol:AT4G10265 "AT4G10265" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009611 "response to wounding"
            evidence=ISS] EMBL:CP002687 GenomeReviews:CT486007_GR
            UniGene:At.50331 HOGENOM:HOG000238802 InterPro:IPR022251
            Pfam:PF12609 EMBL:BT004669 EMBL:AK117837 IPI:IPI00533259
            RefSeq:NP_849355.1 UniGene:At.70459 EnsemblPlants:AT4G10265.1
            GeneID:826618 KEGG:ath:AT4G10265 TAIR:At4g10265 eggNOG:NOG242577
            InParanoid:Q8GY66 OMA:VIRSANQ PhylomeDB:Q8GY66
            ProtClustDB:CLSN2918053 Genevestigator:Q8GY66 Uniprot:Q8GY66
        Length = 83

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 43/90 (47%), Positives = 52/90 (57%)

Query:     1 MSSTSRAWMVAASVAAVEVLKDQ-GFCRWNYPIRLIHQHAKNSLRXXXXXXXXXXXXXXX 59
             MSS S+ WMVAAS+ AVE LKDQ G CRWNY IR  +Q+ +N+LR               
Sbjct:     1 MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query:    60 XXXNNKVREEKAKQSEESMRKVIYLSSWGP 89
                       K KQ+EES+R V+YLS WGP
Sbjct:    61 T--------NKTKQAEESLRTVMYLSCWGP 82


>TAIR|locus:2134188 [details] [associations]
            symbol:AT4G33560 "AT4G33560" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0001666 "response to hypoxia"
            evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
            evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
            acid mediated signaling pathway" evidence=RCA] [GO:0009944
            "polarity specification of adaxial/abaxial axis" evidence=RCA]
            [GO:0010014 "meristem initiation" evidence=RCA] [GO:0010075
            "regulation of meristem growth" evidence=RCA] [GO:0010310
            "regulation of hydrogen peroxide metabolic process" evidence=RCA]
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161583 EMBL:AL031394
            EMBL:BT024757 IPI:IPI00545673 PIR:T04973 RefSeq:NP_195082.1
            UniGene:At.31574 UniGene:At.68081 EnsemblPlants:AT4G33560.1
            GeneID:829495 KEGG:ath:AT4G33560 TAIR:At4g33560 eggNOG:NOG255457
            HOGENOM:HOG000238802 OMA:HKEAMAR ProtClustDB:CLSN2915975
            Genevestigator:O81873 InterPro:IPR022251 Pfam:PF12609
            Uniprot:O81873
        Length = 95

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/83 (34%), Positives = 40/83 (48%)

Query:     7 AWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRXXXXXXXXXXXXXXXXXXNNKV 66
             +W VA ++AAVEVLKDQG  RWNY  RL+H+ A   +R                  + + 
Sbjct:     8 SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query:    67 REEKAKQSEESMRKVIYLSSWGP 89
             +       E S  K + LS +GP
Sbjct:    68 KPLSTTPFETSFEKAMGLSCFGP 90


>TAIR|locus:2053395 [details] [associations]
            symbol:AT2G14070 "AT2G14070" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR
            InterPro:IPR006566 SMART:SM00579 InterPro:IPR022251 Pfam:PF12609
            EMBL:AC006528 IPI:IPI00545390 PIR:G84513 RefSeq:NP_179023.1
            UniGene:At.40587 PaxDb:Q9ZPT2 PRIDE:Q9ZPT2
            EnsemblPlants:AT2G14070.1 GeneID:815892 KEGG:ath:AT2G14070
            TAIR:At2g14070 eggNOG:NOG322871 HOGENOM:HOG000215027 OMA:HPMPKSE
            ProtClustDB:CLSN2913052 Genevestigator:Q9ZPT2 Uniprot:Q9ZPT2
        Length = 196

 Score = 106 (42.4 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 28/90 (31%), Positives = 43/90 (47%)

Query:     2 SSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRXXXXXXXXXXXXXXXXX 61
             S+   +WMVA ++AAVE        RWNYP+R  ++  +  LR                 
Sbjct:   109 STRHTSWMVATAIAAVET-------RWNYPLRFFNKDVRARLRAIAVTSRPPSSASSSSS 161

Query:    62 XN-NKVREEKAK-QSEESMRKVIYLSSWGP 89
              + + V+E     +SE SM +V+ LS +GP
Sbjct:   162 SSADLVKENHPMPKSEASMERVMCLSCFGP 191


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.125   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        72   0.00091  102 3  11 22  0.48    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  108 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.81u 0.11s 7.92t   Elapsed:  00:00:01
  Total cpu time:  7.81u 0.11s 7.92t   Elapsed:  00:00:01
  Start:  Tue May 21 00:19:36 2013   End:  Tue May 21 00:19:37 2013

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