Query 042316
Match_columns 90
No_of_seqs 100 out of 120
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f35_A Olfactory marker protei 21.2 29 0.00098 24.7 0.8 10 76-85 132-141 (162)
2 2ki9_A Cannabinoid receptor 2; 19.4 8.3 0.00028 19.4 -1.8 8 82-89 14-21 (33)
3 1kpt_A KP4 toxin; killer toxin 14.0 82 0.0028 20.8 1.7 16 11-27 64-79 (105)
4 2w0c_T Protein P6, protein VI; 12.3 1E+02 0.0035 20.6 1.7 18 4-21 7-24 (127)
5 2l6m_A Protein dicer; DSRBD, h 10.2 86 0.0029 21.2 0.8 10 17-27 30-39 (121)
6 4gac_A Alcohol dehydrogenase [ 9.3 1.3E+02 0.0044 21.6 1.5 16 12-27 141-156 (324)
7 1us0_A Aldose reductase; oxido 8.7 1.4E+02 0.0047 21.6 1.5 17 12-28 140-156 (316)
8 1qwk_A Aldose reductase, aldo- 8.6 1.4E+02 0.0049 21.6 1.5 18 11-28 132-149 (317)
9 3h7r_A Aldo-keto reductase; st 8.4 1.4E+02 0.0049 21.9 1.5 15 13-27 155-169 (331)
10 1q55_A EP-cadherin, C-cadherin 8.3 78 0.0027 26.9 0.0 7 83-89 858-864 (880)
No 1
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=21.22 E-value=29 Score=24.66 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=8.0
Q ss_pred hhhcceeeee
Q 042316 76 ESMRKVIYLS 85 (90)
Q Consensus 76 ESLR~VMyLS 85 (90)
...|||||+-
T Consensus 132 AkiRKVMYFl 141 (162)
T 1f35_A 132 AKIRKVMYFL 141 (162)
T ss_dssp HHHCSEEEEE
T ss_pred HHHHhheeEE
Confidence 4689999974
No 2
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=19.44 E-value=8.3 Score=19.40 Aligned_cols=8 Identities=38% Similarity=0.916 Sum_probs=6.3
Q ss_pred eeeecccC
Q 042316 82 IYLSSWGP 89 (90)
Q Consensus 82 MyLSCWGP 89 (90)
.|+-||.|
T Consensus 14 ~F~icW~P 21 (33)
T 2ki9_A 14 VLLICWFP 21 (33)
T ss_dssp HHTTTSSH
T ss_pred HHHHHHhH
Confidence 47789988
No 3
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit, alpha/beta family, LEFT-handed crossover, fungal TOXI; 1.75A {Ustilago maydis} SCOP: d.70.1.1
Probab=13.98 E-value=82 Score=20.79 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=12.4
Q ss_pred HHHHHHHHHhccccccc
Q 042316 11 AASVAAVEVLKDQGFCR 27 (90)
Q Consensus 11 AaSvgaVealKDQG~Cr 27 (90)
+.....+++|.|+| ||
T Consensus 64 ~~~~~~~~~L~~hG-Ck 79 (105)
T 1kpt_A 64 TEACRHLTNLVNHG-CR 79 (105)
T ss_dssp HHHHHHHHHHHHHT-CS
T ss_pred HHHHHHHHHHHhcC-cc
Confidence 45677899999997 65
No 4
>2w0c_T Protein P6, protein VI; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=12.27 E-value=1e+02 Score=20.64 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHHHHHhc
Q 042316 4 TSRAWMVAASVAAVEVLK 21 (90)
Q Consensus 4 ~~~~w~vAaSvgaVealK 21 (90)
.+-+||.|+.||+-.-.|
T Consensus 7 knfvwilaagvgvwfyqk 24 (127)
T 2w0c_T 7 KNFVWILAAGVGVWFYQK 24 (127)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhheeeecccEEEEeee
Confidence 456899999999854433
No 5
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Probab=10.17 E-value=86 Score=21.22 Aligned_cols=10 Identities=60% Similarity=1.182 Sum_probs=7.3
Q ss_pred HHHhccccccc
Q 042316 17 VEVLKDQGFCR 27 (90)
Q Consensus 17 VealKDQG~Cr 27 (90)
-+-|+||| |.
T Consensus 30 ~Q~Lq~QG-C~ 39 (121)
T 2l6m_A 30 YQLLKDQG-CE 39 (121)
T ss_dssp HHHHTTTT-CC
T ss_pred HHHHHHhc-HH
Confidence 46688998 75
No 6
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=9.32 E-value=1.3e+02 Score=21.57 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.5
Q ss_pred HHHHHHHHhccccccc
Q 042316 12 ASVAAVEVLKDQGFCR 27 (90)
Q Consensus 12 aSvgaVealKDQG~Cr 27 (90)
-++.++|.|+++|+.|
T Consensus 141 e~~~al~~l~~~Gkir 156 (324)
T 4gac_A 141 ETWKALEVLVAKGLVK 156 (324)
T ss_dssp HHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHCCCee
Confidence 5678899999998776
No 7
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=8.72 E-value=1.4e+02 Score=21.57 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.1
Q ss_pred HHHHHHHHhcccccccc
Q 042316 12 ASVAAVEVLKDQGFCRW 28 (90)
Q Consensus 12 aSvgaVealKDQG~Crw 28 (90)
-++.++|.|+++|++|.
T Consensus 140 e~~~ale~l~~~Gkir~ 156 (316)
T 1us0_A 140 DTWAAMEELVDEGLVKA 156 (316)
T ss_dssp HHHHHHHHHHHTTSBSC
T ss_pred HHHHHHHHHHHCCCccE
Confidence 56788999999988775
No 8
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=8.55 E-value=1.4e+02 Score=21.57 Aligned_cols=18 Identities=6% Similarity=0.121 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcccccccc
Q 042316 11 AASVAAVEVLKDQGFCRW 28 (90)
Q Consensus 11 AaSvgaVealKDQG~Crw 28 (90)
.-++.++|.|+++|++|.
T Consensus 132 ~e~~~al~~l~~~Gkir~ 149 (317)
T 1qwk_A 132 EDVWRQFDAVYKAGLAKA 149 (317)
T ss_dssp HHHHHHHHHHHHTTSBSS
T ss_pred HHHHHHHHHHHHcCCeeE
Confidence 356788999999988775
No 9
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=8.42 E-value=1.4e+02 Score=21.89 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=0.0
Q ss_pred HHHHHHHhccccccc
Q 042316 13 SVAAVEVLKDQGFCR 27 (90)
Q Consensus 13 SvgaVealKDQG~Cr 27 (90)
++.++|.|+++|++|
T Consensus 155 ~~~aL~~l~~~Gkir 169 (331)
T 3h7r_A 155 TWKAMEALYDSGKAR 169 (331)
T ss_dssp HHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHcCCCc
No 10
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=8.31 E-value=78 Score=26.85 Aligned_cols=7 Identities=71% Similarity=1.697 Sum_probs=0.0
Q ss_pred eeecccC
Q 042316 83 YLSSWGP 89 (90)
Q Consensus 83 yLSCWGP 89 (90)
||+.|||
T Consensus 858 ~L~~~gp 864 (880)
T 1q55_A 858 YLSDWGS 864 (880)
T ss_dssp -------
T ss_pred hhcccch
Done!