BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042318
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VLY|A Chain A, Crystal Structure Of A Putative Aminomethyltransferase
(Ygfz) From Escherichia Coli At 1.30 A Resolution
Length = 338
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 274 GEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRL 315
G+ +P NL L ISF KGCY GQE +AR RG ++ L
Sbjct: 219 GQFIPQATNLQALGGISFKKGCYTGQEXVARAKFRGANKRAL 260
>pdb|1NRK|A Chain A, Ygfz Protein
Length = 328
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 274 GEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRL 315
G+ +P NL L ISF KGCY GQE +AR RG ++ L
Sbjct: 210 GQFIPQATNLQALGGISFKKGCYTGQEXVARAKFRGANKRAL 251
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From
Leptospirillum Rubarum
Length = 355
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 251 DEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAI--SFDKGCYVGQELIARTHHR 308
DE +YL E+G+ +E+ P E AGL+++ S++KGCYVGQE + R +
Sbjct: 217 DESSYLAYLTEKGIPLFPSEL-NDSFFPAE---AGLDSVGVSYNKGCYVGQEPVTRLKFQ 272
Query: 309 GVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTA-----LGCRGLGVLR 363
G + + L R G + P + + + + G +AG +T LG G+G+
Sbjct: 273 GHLNRSLAGFRL---EGGPFPKXEFPVT-LFNPKDGNEAGILTRTSSSDILGS-GIGLGY 327
Query: 364 LEEVLKESGA-LTIQGQEDVRVEAI 387
++ E+G L + + VRV ++
Sbjct: 328 IKRNFSENGTELLLPDAQLVRVHSL 352
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 205 LACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGV 264
+A R H++ MLDG+ LR V++L + Y+ P +EA TD +L +LE+
Sbjct: 51 VAHRSHVINMLDGDALR----RVVELEKP----HYIVPEIEAIA-TD----MLIQLEE-- 95
Query: 265 AEGSTEIPKGEAMPLEYNLAGLNAISFDK 293
EG +P A L N G+ ++ ++
Sbjct: 96 -EGLNVVPCARATKLTMNREGIRRLAAEE 123
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 205 LACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGV 264
+A R H++ MLDG+ LR V++L + Y+ P +EA TD +L +LE+
Sbjct: 52 VAHRSHVINMLDGDALR----RVVELEKP----HYIVPEIEAIA-TD----MLIQLEE-- 96
Query: 265 AEGSTEIPKGEAMPLEYNLAGLNAISFDK 293
EG +P A L N G+ ++ ++
Sbjct: 97 -EGLNVVPCARATKLTMNREGIRRLAAEE 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,500,550
Number of Sequences: 62578
Number of extensions: 537610
Number of successful extensions: 1240
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 11
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)