Query 042318
Match_columns 407
No_of_seqs 114 out of 1167
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2929 Transcription factor, 100.0 4.9E-55 1.1E-59 415.6 22.2 341 3-403 4-347 (348)
2 TIGR00528 gcvT glycine cleavag 100.0 1.6E-53 3.5E-58 429.2 22.3 323 11-393 22-360 (361)
3 PRK13579 gcvT glycine cleavage 100.0 3E-53 6.6E-58 428.5 22.7 321 11-395 30-367 (370)
4 PRK00389 gcvT glycine cleavage 100.0 3.4E-53 7.4E-58 426.4 23.0 319 11-394 23-356 (359)
5 PLN02319 aminomethyltransferas 100.0 3.9E-52 8.4E-57 424.7 22.9 322 12-395 54-399 (404)
6 PRK09559 putative global regul 100.0 2.9E-49 6.2E-54 393.3 23.6 293 32-391 19-323 (327)
7 TIGR01372 soxA sarcosine oxida 100.0 4.8E-49 1E-53 440.5 22.8 327 12-395 618-979 (985)
8 COG0404 GcvT Glycine cleavage 100.0 1.9E-48 4.2E-53 390.8 21.9 324 12-395 27-373 (379)
9 PRK12486 dmdA putative dimethy 100.0 1.8E-48 3.8E-53 393.3 21.0 314 12-392 34-368 (368)
10 COG0354 Predicted aminomethylt 100.0 1.4E-45 3E-50 360.8 18.8 286 29-395 11-298 (305)
11 KOG2770 Aminomethyl transferas 100.0 9.8E-41 2.1E-45 320.8 16.9 324 11-395 46-396 (401)
12 KOG2844 Dimethylglycine dehydr 100.0 4.1E-36 8.8E-41 309.4 17.7 312 12-384 498-837 (856)
13 PF01571 GCV_T: Aminomethyltra 100.0 7.9E-35 1.7E-39 271.4 12.1 200 34-286 1-211 (211)
14 TIGR03317 ygfZ_signature folat 99.8 5.8E-21 1.2E-25 147.0 6.0 65 254-319 2-66 (67)
15 PF08669 GCV_T_C: Glycine clea 99.5 1.1E-13 2.3E-18 113.5 10.0 87 294-388 1-94 (95)
16 TIGR01375 soxG sarcosine oxida 98.3 6.2E-07 1.3E-11 79.8 4.1 101 134-244 41-143 (152)
17 TIGR01375 soxG sarcosine oxida 95.3 0.077 1.7E-06 47.1 7.8 78 31-155 68-148 (152)
18 PF04268 SoxG: Sarcosine oxida 94.0 0.19 4.2E-06 44.5 7.1 78 31-155 63-143 (147)
19 PF10396 TrmE_N: GTP-binding p 93.9 0.27 5.9E-06 41.7 7.4 82 38-156 12-95 (114)
20 COG0486 ThdF Predicted GTPase 88.8 1.3 2.8E-05 46.2 7.3 84 38-156 17-102 (454)
21 TIGR00450 mnmE_trmE_thdF tRNA 73.0 11 0.00024 39.4 7.4 84 38-156 7-92 (442)
22 COG4583 Sarcosine oxidase gamm 68.5 13 0.00028 34.3 5.8 77 33-156 104-183 (189)
23 PRK05291 trmE tRNA modificatio 64.4 17 0.00036 38.1 6.6 82 38-156 17-100 (449)
24 PF04268 SoxG: Sarcosine oxida 64.1 5.5 0.00012 35.2 2.5 57 134-193 39-95 (147)
25 PF01571 GCV_T: Aminomethyltra 59.4 39 0.00084 30.9 7.5 80 30-155 86-166 (211)
26 COG0404 GcvT Glycine cleavage 57.1 33 0.00072 35.2 7.0 82 31-156 138-222 (379)
27 KOG2770 Aminomethyl transferas 52.2 27 0.00059 35.3 5.2 81 32-155 163-245 (401)
28 PRK00389 gcvT glycine cleavage 38.4 1.4E+02 0.003 30.0 8.1 84 29-155 130-214 (359)
29 TIGR00528 gcvT glycine cleavag 34.6 1.3E+02 0.0027 30.4 7.2 85 28-155 127-212 (361)
30 PRK13579 gcvT glycine cleavage 33.3 1.3E+02 0.0028 30.6 7.0 79 31-155 138-217 (370)
31 PRK12486 dmdA putative dimethy 32.4 1.7E+02 0.0037 29.7 7.7 80 31-155 141-221 (368)
32 PF02470 MCE: mce related prot 21.9 1.6E+02 0.0035 22.5 4.2 21 331-353 14-34 (81)
33 PLN02319 aminomethyltransferas 21.6 2.2E+02 0.0048 29.3 6.3 73 38-155 175-248 (404)
34 cd04448 DEP_PIKfyve DEP (Dishe 21.5 59 0.0013 25.7 1.6 19 293-311 26-44 (81)
35 cd04439 DEP_1_P-Rex DEP (Dishe 21.1 48 0.001 26.3 1.0 20 293-312 26-45 (81)
36 COG4583 Sarcosine oxidase gamm 20.4 1.5E+02 0.0032 27.5 4.1 57 135-193 78-134 (189)
37 cd04443 DEP_GPR155 DEP (Dishev 20.3 59 0.0013 25.9 1.4 18 293-310 28-45 (83)
No 1
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription]
Probab=100.00 E-value=4.9e-55 Score=415.65 Aligned_cols=341 Identities=40% Similarity=0.607 Sum_probs=261.8
Q ss_pred cCCCCcCCCCCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCC
Q 042318 3 RIKPSLRSPKSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPN 82 (407)
Q Consensus 3 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~ 82 (407)
..++..++-|+|=+.+.....+.++ +..++.|++|++|+|+|+|+++|||||+||||.+-. |+.+
T Consensus 4 ~~~~~~~~~~t~~sp~~~~~~~~~~---~~~~~~L~~RsliRv~GpDtvkFLqGL~TNdv~~~~------------p~~~ 68 (348)
T KOG2929|consen 4 AVRSRSRNFFTMRSPDASPSGQPDA---NFNLSLLESRSLIRVRGPDTVKFLQGLLTNDVTRHF------------PGIQ 68 (348)
T ss_pred chhhhheeeeeeecCCccccccccc---cceeeecCCceEEEEeCccHHHHHhhhhcccccccC------------cccc
Confidence 3456666677776666665556554 566899999999999999999999999999998752 5566
Q ss_pred CCCCCCccccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCc
Q 042318 83 LPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKV 162 (407)
Q Consensus 83 ~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV 162 (407)
.+++++.+.|++|||.|||+++|+++|+.+.+. + +++++|+|+++...++++||++|+++.||
T Consensus 69 ~a~~t~~~~Ya~fLN~qGR~LyD~iLY~~~~~~------~-----------~~~~llE~d~~~~~~~~khl~~yrLr~kv 131 (348)
T KOG2929|consen 69 GAPITRNGLYAAFLNTQGRLLYDTILYPTPVPV------S-----------EPELLLECDGSVVGDFLKHLQKYRLRRKV 131 (348)
T ss_pred cCCCCCchhhhhhhccCccEEEEEEEecCCCCC------C-----------CCceEEEecCccchHHHHHHHHhhhhhcc
Confidence 788888899999999999999999999986321 1 47999999999999999999999999999
Q ss_pred EEeecCCceeEEEEec-CCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccccccc
Q 042318 163 EIENVAEDFSCWQRFG-GKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNLVEYV 240 (407)
Q Consensus 163 ~i~~~s~~~~~~~~~G-p~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~~~~~ 240 (407)
+|+.+++++..|.+.- |+... ...+ |..... ....-+|||.+ .||+.+-.+-.
T Consensus 132 ~v~~id~el~tw~v~~~p~~~~------------d~~~----~~~~~~---------~~~~~rdpr~s~~~~~~l~~~f~ 186 (348)
T KOG2929|consen 132 EVEKIDHELKTWKVEVLPKNSI------------DANV----FEENVL---------NVLYNRDPRFSGMGWRLLPQDFA 186 (348)
T ss_pred eeeeCchhhceeeeeecccccc------------chhh----cchhhh---------hhhhccCCccccccccccceeec
Confidence 9999988888888663 11110 0000 000000 01122688887 77775532222
Q ss_pred ccccccccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEEE
Q 042318 241 TPLVEADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRF 320 (407)
Q Consensus 241 ~~l~~~~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~~ 320 (407)
..+.+.....+...|+.+|+++|++++.+|++++..+|+|+|+|++|+|||+||||+|||++||+|++|.+||||+++++
T Consensus 187 ~~~~~~~~~~d~~~Y~~~Ry~~Gv~EG~~el~pg~~lPLE~N~d~lngISf~KGCYVGQELTARThhtGViRKRl~P~r~ 266 (348)
T KOG2929|consen 187 VPTSEQVSEGDESDYRLLRYQQGVAEGSQELIPGTLLPLESNFDFLNGISFDKGCYVGQELTARTHHTGVIRKRLFPFRL 266 (348)
T ss_pred CcccccccccchhHHHHHHHHcCcccchhhcCcccccceeccccccccccccCcceechhheehhhhcceeeeeeeeEEe
Confidence 33334445556677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccc-CCCCCceeeCCCCeeeeEEEeccCceEEEEEEehhhhcCCCcEEEecCceeEEEEeCCCCCCccchhh
Q 042318 321 LDNRGNELEQK-VAPGSEVIDAESGKKAGKVTTALGCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAEWLQE 399 (407)
Q Consensus 321 ~~~~g~~~~~~-~~~g~~v~~~~~g~~vG~vtS~~~~igLAlvr~~~~~~~~~~l~v~~~~~~~v~~~~p~~~~~~~~~~ 399 (407)
.+.++.++... +.++..|. ...|++||+|.++.+..|||+++.+...+.-..+.++| +...+++.+|.||| +|..-
T Consensus 267 ~~~e~~p~~~~~~~~~~~v~-~~~g~kvG~~~~~~g~~glgllr~e~~~~~~~~l~~~g-~~i~i~~~~p~W~p-~~~~~ 343 (348)
T KOG2929|consen 267 DLAENEPLLVGFTNAPPEVE-KKKGRKVGRVISGEGLRGLGLLRLEKFKAQFYKLTTKG-ENIKIKPQKPEWWP-DWSNG 343 (348)
T ss_pred cccCCCccccCCCCCcccee-cccCceeeeeeccCcceeeeeeehhhhhccchhhhccC-ccceeccCCCcccc-cccCC
Confidence 65444333222 12333333 35799999999999999999999999843323456665 56889999999986 57777
Q ss_pred hhhh
Q 042318 400 NQQH 403 (407)
Q Consensus 400 ~~~~ 403 (407)
++||
T Consensus 344 ~~~~ 347 (348)
T KOG2929|consen 344 NGPH 347 (348)
T ss_pred CCCC
Confidence 7766
No 2
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=100.00 E-value=1.6e-53 Score=429.19 Aligned_cols=323 Identities=21% Similarity=0.219 Sum_probs=260.9
Q ss_pred CCCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCcc
Q 042318 11 PKSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASP 90 (407)
Q Consensus 11 ~~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (407)
-+++|..|.....|+.++|++|+++|+|++++|+|+|+||.+|||+|+||||.++++++ +
T Consensus 22 g~~~p~~y~~~~~E~~a~r~~~~l~dls~~~~i~vsG~Da~~fLq~~~t~di~~l~~g~--------------------~ 81 (361)
T TIGR00528 22 GWEMPVQYGSQIDEHHAVRTDAGLFDVSHMGIVDLSGSRSLEFLQRLLPNDVAALTPGK--------------------A 81 (361)
T ss_pred CchhhhccCChHHHHHHHHhhCcEEECCCcEEEEEECCCHHHHHhHhcccccccCCCCC--------------------E
Confidence 46799999999999999999999999999999999999999999999999999998776 6
Q ss_pred ccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCc
Q 042318 91 VYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAED 170 (407)
Q Consensus 91 ~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~ 170 (407)
.|+++||+||||++|++|+++. +++|||.++++..+.+++||++| ++.+|+|++++++
T Consensus 82 ~~~~~l~~~G~i~~d~~v~r~~---------------------~d~~~l~~~~~~~~~~~~~l~~~-~~~~v~i~~~t~~ 139 (361)
T TIGR00528 82 QYSVLLNPQGGVVDDLIIYYFG---------------------EDRFRLVVNAATREKDLSWITEH-AEPFGIEDTQSDD 139 (361)
T ss_pred EEEEEECCCCeEEEEEEEEEec---------------------CCEEEEEECCccHHHHHHHHHHh-CcCCcEEEECcCC
Confidence 9999999999999999999985 57899999999999999999999 5568999999999
Q ss_pred eeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-cccccc----cc
Q 042318 171 FSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTP----LV 244 (407)
Q Consensus 171 ~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~----l~ 244 (407)
+++++++||+|.++++.+...+++... .|..... ...++..+.+.+.+..+ +||++++ .+.... |+
T Consensus 140 ~~~l~l~GP~a~~~l~~l~~~~~~~~~-----~~~~~~~---~~~~g~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~l~ 211 (361)
T TIGR00528 140 ISLLAVQGPKAATILNPLQDQAVEGLK-----PFFFVQE---ADFSGRKAFIARTGYTGEDGYEIALPNEKAADFWRALV 211 (361)
T ss_pred EEEEEeECcCHHHHHHHhcccchhhcc-----cccceeE---EEECCceEEEEEcceeCCCeEEEEecHHHHHHHHHHHH
Confidence 999999999998877654332222110 1111000 01122223344444444 7898887 333333 34
Q ss_pred cc--ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEEEec
Q 042318 245 EA--DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLD 322 (407)
Q Consensus 245 ~~--~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~~~~ 322 (407)
++ ..++|..+|+.+|||+|+|.++.|+. ++++|+|+||+++.+++|+||||+|||+++|++++|+ +||++.+.+..
T Consensus 212 ~~gg~~~~g~~a~~~lRie~G~p~~~~d~~-~~~~P~E~gl~~~v~~~fkKgcy~GqE~lar~~~~G~-~krlv~l~~~~ 289 (361)
T TIGR00528 212 EAYGVKPCGLGARDTLRLEAGMNLYGQELD-ETITPLEAGLGWTIAWEPAKRDFIGRAVLEEQKENGT-EKKLVGLEMLE 289 (361)
T ss_pred hcCCcEEcchhhhhhhHhhcCCCccCccCC-CCCChHHCCcccEEecCCCCCCCcCHHHHHhHHhcCC-CeEEEEEEECC
Confidence 42 47899999999999999999999985 7899999999998677778999999999999999998 56699987642
Q ss_pred CCCccccccCCCCCceeeCCCC-eeeeEEEecc------CceEEEEEEehhhhcCCCcEEEec-CceeEEEEeCCCCCC
Q 042318 323 NRGNELEQKVAPGSEVIDAESG-KKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQG-QEDVRVEAIRPNWWP 393 (407)
Q Consensus 323 ~~g~~~~~~~~~g~~v~~~~~g-~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~~p~~~~ 393 (407)
...+.+|++|+.. +| ++||.|||++ .++|||+|+.+++ ..|+++.|.. |+.+.+++..+||++
T Consensus 290 ------~~~~~~g~~v~~~-~g~~~vG~vtS~~~s~~~g~~iala~v~~~~~-~~g~~~~v~~~g~~~~a~v~~~p~~~ 360 (361)
T TIGR00528 290 ------KGIARNGYPVFFT-NGNQHVGIVTSGTFSPTLGKNIGLAYVPSETE-KIGTTLIVQIRNKEYPIKVVKPPFVR 360 (361)
T ss_pred ------CcCCCCCCEEEeC-CCCeeEEEEeecCcchhcCceEEEEEEChhhc-CCCCEEEEEECCeEEEEEEecCCCcC
Confidence 1345789999852 45 9999999985 3799999998887 4888888763 567899999999875
No 3
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=100.00 E-value=3e-53 Score=428.49 Aligned_cols=321 Identities=16% Similarity=0.151 Sum_probs=255.5
Q ss_pred CCCcCchhh-hhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCc
Q 042318 11 PKSIPSIFR-ALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESAS 89 (407)
Q Consensus 11 ~~~~p~~~~-~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
-++||..|. ....||.++|++|+++|+|++++|+|+|+||.+|||+++||||.++.+++
T Consensus 30 g~e~p~~f~~~~~~E~~avr~~a~l~Dls~~~~i~v~G~Da~~fLq~~~tndi~~l~~g~-------------------- 89 (370)
T PRK13579 30 GYDMPVQYPAGVLKEHLHTRAHAGLFDVSHMGQIEVSGKDAAAALERLVPVDILALKEGR-------------------- 89 (370)
T ss_pred CeecccccCccHHHHHHHHHhccEEEECCCcEEEEEECCCHHHHHHHhccccCCCCCCCC--------------------
Confidence 358999996 58899999999999999999999999999999999999999999998766
Q ss_pred cccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCC
Q 042318 90 PVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAE 169 (407)
Q Consensus 90 ~~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~ 169 (407)
++|+++||+||||++|++|+++ +++|||.++++..+.+++||++|... ||+|++++
T Consensus 90 ~~y~~~ln~~G~i~~d~~v~r~----------------------~d~~~L~~~~~~~~~~~~~l~~~~~~-~V~i~d~~- 145 (370)
T PRK13579 90 QRYTFFTNEQGGILDDLMVTNL----------------------GDHLFLVVNAACKDADIAHLREHLSD-ECEVNPLD- 145 (370)
T ss_pred EEEeEEECCCCeEEEeEEEEEE----------------------CCeEEEEECcCCHHHHHHHHHHhCCC-CcEEEECC-
Confidence 6999999999999999999998 37899999999999999999998665 99999986
Q ss_pred ceeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-ccccccc----
Q 042318 170 DFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTPL---- 243 (407)
Q Consensus 170 ~~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~l---- 243 (407)
++++++++||+|.++++.+.. +++.. .|...... ..++..+.+.+..-.+ +||++++ .+....+
T Consensus 146 ~~~~l~l~GP~a~~il~~l~~-~~~~~------~~~~~~~~---~~~g~~~~i~R~~~~Ge~G~el~~~~~~~~~l~~~l 215 (370)
T PRK13579 146 DRALLALQGPEAEAVLADLGP-PVAAL------RFMDGFEP---RLHGVDCFVSRSGYTGEDGFEISVPADAAEALAEAL 215 (370)
T ss_pred CcEEEEEECcCHHHHHHHhhh-hhhcC------CCceEEEE---EECCeEEEEEEeeecCCCEEEEEEcHHHHHHHHHHH
Confidence 689999999999887654321 11110 11111000 1222223333333334 7899887 3333333
Q ss_pred cc--cccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccC-CccccCCCCCcchhHHHHhhhcCccCceEEeEEE
Q 042318 244 VE--ADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGL-NAISFDKGCYVGQELIARTHHRGVIRKRLLPLRF 320 (407)
Q Consensus 244 ~~--~~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l-~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~~ 320 (407)
++ ...++|..+|+.+|||+|+|.+|+|++ ++.+|+|+||+++ +.++|+||||+|||+++|++++|+ +||++++++
T Consensus 216 ~~~~g~~~~G~~a~~~lRiE~G~p~~g~dl~-~~~~P~E~gL~~~v~~~~~~KgcyiGqEalar~~~~G~-~kr~v~l~~ 293 (370)
T PRK13579 216 LADPRVEPIGLGARDSLRLEAGLCLYGHDID-TTTTPVEAALEWAIQKARREAGGFPGAKAILAALAKGA-SRRRVGLKP 293 (370)
T ss_pred HccCCceEechhhhhHHHhhcCCcccCCcCC-CCCCHHHCCccceecCCCCCCCCCcCHHHHHHHHhcCC-CeEEEEEEE
Confidence 33 246899999999999999999999996 6789999999975 566689999999999999999997 567788877
Q ss_pred ecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEec-CceeEEEEeCCCCCC
Q 042318 321 LDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQG-QEDVRVEAIRPNWWP 393 (407)
Q Consensus 321 ~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~~p~~~~ 393 (407)
.. ...+.+|++|+.+ +|++||+|||+. .++|||||+.+++ +.|+.+.|.. ++.+.+++..+||++
T Consensus 294 ~~------~~~~~~g~~v~~~-~g~~VG~VtS~~~sp~l~~~iala~v~~~~~-~~g~~v~v~~~g~~~~a~v~~~Pf~~ 365 (370)
T PRK13579 294 EG------RAPVREGAPLFDD-AGTEIGTVTSGGFGPSVGGPVAMGYVPASLA-APGTAVFAEVRGKRLPVTVHALPFVP 365 (370)
T ss_pred CC------ccCCCCCCEEEcC-CCceEEEEeecCcchhcCCeEEEEEEChhhc-CCCCEEEEEECCEEEEEEEEcCCccc
Confidence 42 2346789999942 369999999985 4799999998887 4888888763 467899999999986
Q ss_pred cc
Q 042318 394 AE 395 (407)
Q Consensus 394 ~~ 395 (407)
.+
T Consensus 366 ~~ 367 (370)
T PRK13579 366 HR 367 (370)
T ss_pred CC
Confidence 54
No 4
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=100.00 E-value=3.4e-53 Score=426.37 Aligned_cols=319 Identities=19% Similarity=0.260 Sum_probs=256.4
Q ss_pred CCCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCcc
Q 042318 11 PKSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASP 90 (407)
Q Consensus 11 ~~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (407)
-+++|..|.....|+.++|++|+++|+|++++|+|+|+||.+|||+++||||+++.+++ +
T Consensus 23 g~~~p~~~~~~~~E~~a~r~~~~l~dls~~~~i~v~G~Da~~fLq~~~t~dv~~l~~g~--------------------~ 82 (359)
T PRK00389 23 GWEMPVQYGSIIEEHHAVRTDAGLFDVSHMGEVDVTGPDALAFLQYLLANDVSKLKPGK--------------------A 82 (359)
T ss_pred CeecchhccCHHHHHHHHHhCceEEECCCcEEEEEECCCHHHHHhhhcccccccCCCCc--------------------E
Confidence 56799999999999999999999999999999999999999999999999999998766 6
Q ss_pred ccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCc
Q 042318 91 VYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAED 170 (407)
Q Consensus 91 ~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~ 170 (407)
.|+++||+||||++|++|+++. +++|+|.++++.++.+++||++|+.+.||+|++++++
T Consensus 83 ~~~~~l~~~G~i~~d~~v~r~~---------------------~~~~ll~~~~~~~~~~~~~L~~~~~~~~V~i~d~~~~ 141 (359)
T PRK00389 83 QYTCMLNEDGGVIDDLIVYKLS---------------------EDEYLLVVNAANREKDLAWIKSHAAGFGVEVTDRSDD 141 (359)
T ss_pred EEeEEECCCCCEEEeEEEEEec---------------------CCEEEEEECcccHHHHHHHHHhhCccCCEEEEECCCC
Confidence 9999999999999999999985 4789999999999999999999999999999999999
Q ss_pred eeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-ccccccc----c
Q 042318 171 FSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTPL----V 244 (407)
Q Consensus 171 ~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~l----~ 244 (407)
+.+++++||+|.++++.+...+++... +|...... ..++..+.+.+.+... +||++++ .+....+ +
T Consensus 142 ~~~l~l~GP~a~~~l~~~~~~~l~~~~-----~~~~~~~~---~~~~~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~L~ 213 (359)
T PRK00389 142 LAMIAVQGPKAREKLQKLTDADLSELK-----PFFGAQGA---EVGGGDVLVARTGYTGEDGFEIYLPAEDAEALWDALL 213 (359)
T ss_pred EEEEEEECccHHHHHHHhcccchhhcc-----ccceeeEE---EECCeEEEEEeceecCCCeEEEEEchHHHHHHHHHHH
Confidence 999999999998877654332222110 11111000 0112223333444334 7888877 3333333 3
Q ss_pred c-cccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccC-CCCCcchhHHHHhhhcCccCceEEeEEEec
Q 042318 245 E-ADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFD-KGCYVGQELIARTHHRGVIRKRLLPLRFLD 322 (407)
Q Consensus 245 ~-~~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~-KGCYvGQE~vaR~~~~G~~rKrLv~l~~~~ 322 (407)
+ ...++|..+|+.+|||+|+|.++.|+. ++++|+|+||++ +|||+ ||||+|||+|+|++++|. ||||+++.+..
T Consensus 214 ~ag~~~~g~~a~~~lrie~G~p~~~~d~~-~~~~P~e~gl~~--~v~~~~Kgcy~GqE~var~~~~g~-krrlv~l~~~~ 289 (359)
T PRK00389 214 EAGVKPCGLGARDTLRLEAGMPLYGQDMD-ETITPLEAGLGW--TVKLEEKRDFIGREALEAQKEAGV-ERKLVGLELEE 289 (359)
T ss_pred HcCCeecchhHHhHHHHhcCCCccCccCC-CCCChHHcCccc--EecCCCCCCCcCHHHHHHHHhcCC-CeEEEEEEECC
Confidence 3 247899999999999999999999995 689999999998 69999 999999999999999997 99999998742
Q ss_pred CCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEe-cCceeEEEEeCCCCCCc
Q 042318 323 NRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQ-GQEDVRVEAIRPNWWPA 394 (407)
Q Consensus 323 ~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~-~~~~~~v~~~~p~~~~~ 394 (407)
...+.+|++|. .+|+.||+|||+. .++|||+|+.++ |+.++|. +++...+++...||+++
T Consensus 290 ------~~~~~~g~~v~--~~g~~vG~vts~~~s~~~~~~iala~l~~~~----g~~~~v~~~~~~~~a~v~~~p~~~~ 356 (359)
T PRK00389 290 ------RGIPRHGYPVL--ADGEEIGEVTSGTFSPTLGKSIALAYVPAGV----GDEVEVEIRGKQVPAKVVKPPFVRR 356 (359)
T ss_pred ------CcCCCCCCEEe--eCCcEEEEEeccCcccccCceEEEEEecCCC----CCEEEEEECCeEEEEEEecCCCcCC
Confidence 23467899996 5799999999975 358888887753 5666554 23557888888888764
No 5
>PLN02319 aminomethyltransferase
Probab=100.00 E-value=3.9e-52 Score=424.73 Aligned_cols=322 Identities=16% Similarity=0.183 Sum_probs=256.5
Q ss_pred CCcCchhh-hhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCcc
Q 042318 12 KSIPSIFR-ALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASP 90 (407)
Q Consensus 12 ~~~p~~~~-~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (407)
++||..|. ....||.++|++|+++|+|++++|+|+|+||.+|||+++||||.++.+++ +
T Consensus 54 we~p~~y~~~~~~E~~a~R~~~gl~DlS~~~~i~V~G~Da~~fLq~l~t~dv~~l~~G~--------------------~ 113 (404)
T PLN02319 54 WSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLKGKDAIPFLETLVVADIAGLKDGT--------------------G 113 (404)
T ss_pred EehhhhcCccHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHhhhcccccCCCCCCC--------------------E
Confidence 58999997 47899999999999999999999999999999999999999999998766 6
Q ss_pred ccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCC-----CcEEe
Q 042318 91 VYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRS-----KVEIE 165 (407)
Q Consensus 91 ~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~-----kV~i~ 165 (407)
.||+|||++|+|++|++|+++. +++|||.++++..+.+++||++|.... +|+++
T Consensus 114 ~yt~~ln~~G~ii~D~~v~r~~---------------------~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 172 (404)
T PLN02319 114 TLSVFTNEKGGIIDDTVITKVT---------------------DDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWH 172 (404)
T ss_pred EEeEEECCCCeEEEEEEEEEEc---------------------CCEEEEEECCccHHHHHHHHHhhhhhccCCCCcEEEE
Confidence 9999999999999999999985 588999999999999999999987542 57774
Q ss_pred ecCCceeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-cccc---
Q 042318 166 NVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYV--- 240 (407)
Q Consensus 166 ~~s~~~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~--- 240 (407)
.++++++++++||+|.++++.+...+++.. .|...... ..++..+.+.+....+ +||++++ .+..
T Consensus 173 -~~~~~~~l~lqGP~s~~~l~~l~~~~l~~~------~f~~~~~~---~i~g~~v~i~R~g~tGE~G~El~~p~~~a~~l 242 (404)
T PLN02319 173 -VHDERSLLALQGPLAAPVLQHLTKEDLSKM------YFGDFRIT---DINGADCFLTRTGYTGEDGFEISVPSEHAVDL 242 (404)
T ss_pred -EcCCeEEEEEECccHHHHHHHhcccchhhC------CCceEEEE---EECCeeEEEEEeeecCCCeEEEEEcHHHHHHH
Confidence 578899999999999887765543223221 12111100 1223334455555445 8899887 3333
Q ss_pred -cccccc----ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccC-CccccCCCCCcchhHHHHhhhcCccCce
Q 042318 241 -TPLVEA----DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGL-NAISFDKGCYVGQELIARTHHRGVIRKR 314 (407)
Q Consensus 241 -~~l~~~----~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l-~aIsf~KGCYvGQE~vaR~~~~G~~rKr 314 (407)
..|+++ ..++|..+|+++|||+|+|.+++|++ ++++|+|+||+++ ...+|+||||+|||+++|++++|. +||
T Consensus 243 ~~~L~~aG~~g~~~~G~~a~d~lRiEaG~p~~g~dl~-~~~~P~EagL~~~v~~~~~~Kg~fiGqEalar~~~~g~-~rr 320 (404)
T PLN02319 243 AKALLEKSEGKVRLTGLGARDSLRLEAGLCLYGNDLE-EHITPVEAGLAWTIGKRRRAEGGFLGADVILKQLKEGV-SRR 320 (404)
T ss_pred HHHHHhCcccCcEecchhHhhHHHhhcCccccCCcCC-CCCCHHHCCccceecccccCCCCCcCHHHHHHHHhcCC-CeE
Confidence 334443 36899999999999999999999995 7899999999984 223478999999999999999996 788
Q ss_pred EEeEEEecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEec-CceeEEEEe
Q 042318 315 LLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQG-QEDVRVEAI 387 (407)
Q Consensus 315 Lv~l~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~ 387 (407)
++++.. + ...+.+|++|+. .+|++||.|||+. .++|||||+.+++ ..|+++.|+. ++.+.+++.
T Consensus 321 lvgl~~-~------~~~~~~g~~v~~-~~g~~VG~VTS~~~Sp~l~~~Iala~v~~~~~-~~g~~v~v~~~g~~~~a~v~ 391 (404)
T PLN02319 321 RVGFIS-S------GAPARSHSEILD-ESGEKIGEVTSGGFSPCLKKNIAMGYVKSGFH-KAGTEVKVEVRGKMYDAVVT 391 (404)
T ss_pred EEEEEE-C------CccCCCCCEEEe-CCCCEEEEEeeecccccCCceEEEEEEChhhc-CCCCEEEEEECCeEEEEEEE
Confidence 888843 2 124567888884 3689999999985 4799999999887 4788887763 456899999
Q ss_pred CCCCCCcc
Q 042318 388 RPNWWPAE 395 (407)
Q Consensus 388 ~p~~~~~~ 395 (407)
..||++.+
T Consensus 392 ~~Pf~~~~ 399 (404)
T PLN02319 392 KMPFVPTK 399 (404)
T ss_pred CCCCcCcc
Confidence 99998755
No 6
>PRK09559 putative global regulator; Reviewed
Probab=100.00 E-value=2.9e-49 Score=393.34 Aligned_cols=293 Identities=22% Similarity=0.246 Sum_probs=222.8
Q ss_pred CeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeCC
Q 042318 32 PLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAP 111 (407)
Q Consensus 32 ~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~ 111 (407)
..+++|+++++|+|+|+||.+|||+|+||||.++.+++ ++|+++||+||||++|++||+.
T Consensus 19 ~~l~~L~~~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~--------------------~~y~~~~n~kGril~d~~v~~~ 78 (327)
T PRK09559 19 LTLISLDDWALATITGADSEKYLQGQVTADVSQLTEDQ--------------------HLLAAHCDAKGKMWSNLRLFRR 78 (327)
T ss_pred eEEEcCccceEEEEECCcHHHHhcccccccccccCCCC--------------------eeEEEEECCCCcEEEEEEEEEe
Confidence 67899999999999999999999999999999998776 5999999999999999999997
Q ss_pred CCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCccccchhhccc
Q 042318 112 PPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQ 191 (407)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a~~~l~~~~~~ 191 (407)
. ++|+|.++++.++.+++||++|++++||+|++ +++++.++++||++.+.+.....
T Consensus 79 ~----------------------~~~~l~~~~~~~~~~~~~L~ky~~~~kV~i~~-~~~~~~i~l~Gp~a~~~l~~~~~- 134 (327)
T PRK09559 79 G----------------------DGFAWIERRSVRENQLTELKKYAVFSKVTIAP-DDERVLLGVAGFQARAALANLFS- 134 (327)
T ss_pred C----------------------CeEEEEeChhhhHHHHHHHhhcccceEEEEEe-CCcEEEEEEECccHHHHHHHhcc-
Confidence 3 56999999999999999999999999999986 67789999999998765433211
Q ss_pred ccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccccCccccc-ccccccccc----cccccChHHHHHHHHHhCCcc
Q 042318 192 RLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNL-VEYVTPLVE----ADKETDEMNYLLCRLEQGVAE 266 (407)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~G~~~~~-~~~~~~l~~----~~~~~g~~~~~~lRiE~G~~~ 266 (407)
.++.... .+ .......+..+..+ ..||++++ .+....+|+ ...+.+...|+.+|||+|+|.
T Consensus 135 ~~~~~~~----~~--------~~~~~~~~~~~~~~--~~g~ei~~~~~~~~~l~~~L~~~~~~~~~~~w~~lrIeaG~p~ 200 (327)
T PRK09559 135 ELPDAEK----PV--------VQEGATTLLWFEHP--AERFLLVTDEATANMLTEKLRGEAQLNNSQQWLALDIEAGFPV 200 (327)
T ss_pred cCCCcCc----ce--------EecCCeEEEEecCC--CCeEEEEechHHHHHHHHHhhhcCccCCHHHHHHHHHHcCCcc
Confidence 0110000 00 00000011111111 14666666 333333443 335577889999999999999
Q ss_pred CCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEEEecCCCccccccCCCCCce--eeCCCC
Q 042318 267 GSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEV--IDAESG 344 (407)
Q Consensus 267 ~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~~~~~~g~~~~~~~~~g~~v--~~~~~g 344 (407)
++.|+ .++++|||+||+++++|||+||||+|||+|+|++++|++||||+++.+.. ...+.+|++| +.+.++
T Consensus 201 ~g~e~-~e~~~Pqe~nL~~l~~Vsf~KGCY~GQE~vAR~~~~G~~krrl~~l~~~~------~~~~~~g~~i~~~~~~~~ 273 (327)
T PRK09559 201 IDAAN-SGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWWLAGKA------SRVPEAGEDLELKMGENW 273 (327)
T ss_pred ccccc-ccccCchhhChhhcCceeecCcccccHHHHHHHHHcCCCceeEEEEeccc------ccCCCCCCeeEEecCCCC
Confidence 99998 58999999999998999999999999999999999999999999987642 2345789965 443347
Q ss_pred eeeeEEEeccC-----ceEEEEEEehhhhcCCCcEEEecCceeEEEEeCCCC
Q 042318 345 KKAGKVTTALG-----CRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNW 391 (407)
Q Consensus 345 ~~vG~vtS~~~-----~igLAlvr~~~~~~~~~~l~v~~~~~~~v~~~~p~~ 391 (407)
+.+|+|+|++. ...+|+++.+. ..++.+++.++....+++..+|+
T Consensus 274 ~~~G~v~s~~~~~~~~~~~l~v~~~~~--~~~~~l~~~~~~~~~~~~~~lPy 323 (327)
T PRK09559 274 RRTGTVLAAVQLDDGQVWVQVVMNNDL--EADSVFRVRDDAGNTLHIQPLPY 323 (327)
T ss_pred ceeEEEEEEEECCCCCEEEEEEEecCc--CCCceEEEccCCCCeeEecCCCC
Confidence 89999999752 23566666544 35678888765445577777665
No 7
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=4.8e-49 Score=440.49 Aligned_cols=327 Identities=17% Similarity=0.225 Sum_probs=264.4
Q ss_pred CCcCchhh--------hhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCC
Q 042318 12 KSIPSIFR--------ALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNL 83 (407)
Q Consensus 12 ~~~p~~~~--------~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~ 83 (407)
+++|..|. +...||.++|++|+++|+|++++|+|+|+||.+|||+++||||+++.+++
T Consensus 618 w~~p~~y~~~~~~~~~~~~~E~~avR~~vgl~D~S~~g~i~V~G~DA~~fL~~~~tndi~~l~~G~-------------- 683 (985)
T TIGR01372 618 WKRPWYYPRRGEDMDEAVARECKAVRESVGLFDASTLGKIEVQGPDAAEFLNRVYTNAFTKLKVGK-------------- 683 (985)
T ss_pred ccchhhhcCCCCcccchHHHHHHHHHhceEEEECCCcEEEEEECcCHHHHHhhhcccccCcCCCCC--------------
Confidence 47899996 56899999999999999999999999999999999999999999998766
Q ss_pred CCCCCccccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhccc----C
Q 042318 84 PYESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRL----R 159 (407)
Q Consensus 84 ~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~----~ 159 (407)
++|++|||++|+|++|++|+++. +++|||.++++.++.+++||++|+. +
T Consensus 684 ------~~yt~~l~~~G~i~dD~~v~r~~---------------------ed~~~l~~~~~~~~~~~~~L~~~~~~~~~~ 736 (985)
T TIGR01372 684 ------ARYGLMLREDGMVFDDGVTSRLA---------------------EDRFLMTTTTGGAARVLQHLEEWLQTEWPE 736 (985)
T ss_pred ------EEEeEEECCCCeEEEeEEEEEEe---------------------CCEEEEEeCCcCHHHHHHHHHHhhhhccCC
Confidence 69999999999999999999985 5899999999999999999999975 4
Q ss_pred CCcEEeecCCceeEEEEecCCccccchhhcc-cccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-
Q 042318 160 SKVEIENVAEDFSCWQRFGGKLSENSSLQKN-QRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL- 236 (407)
Q Consensus 160 ~kV~i~~~s~~~~~~~~~Gp~a~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~- 236 (407)
.||+|++++++++.++++||+|+++++.+.. .+++... +.|+..... ..++..+.+++..-.. +||++++
T Consensus 737 ~~V~i~d~t~~~a~i~l~GP~s~~vl~~l~~~~dl~~~~----~~~~~~~~~---~~~g~~~~i~R~~~tGE~GyEi~~p 809 (985)
T TIGR01372 737 LDVYLTSVTDQWATLAVSGPKARDLLAELVDGLDLSNEA----FPFMAIKEG---TLAGVPARLFRISFSGELAFEVNVP 809 (985)
T ss_pred CCEEEEECCCCEEEEEEECHhHHHHHHHhcCcccCcccc----CCCceeEEE---EECCcEEEEEeccccCCceEEEEec
Confidence 5899999999999999999999988765542 2322110 011111101 1233344555454444 8999888
Q ss_pred ccc----ccccccc-----ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhh
Q 042318 237 VEY----VTPLVEA-----DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHH 307 (407)
Q Consensus 237 ~~~----~~~l~~~-----~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~ 307 (407)
.+. |..|+++ ..++|..+|+.+|||+|+|.+++|++ ++++|+|+||+| +|||+||||+|||+++|+++
T Consensus 810 ~~~~~~l~~~L~~aG~~~g~~p~G~~a~~~lRiE~G~~~~g~d~~-~~~tP~E~gl~~--~V~~~Kg~fiGqeal~r~~~ 886 (985)
T TIGR01372 810 ADYGEAVWEALMEAGQPFGITPYGTETMHVLRAEKGFIIVGQDTD-GTVTPADLGMGW--MVSKKKPDFVGRRMLAREDL 886 (985)
T ss_pred HHHHHHHHHHHHhcchhcCceEcchhhhhhhhhhcCccccCcccC-CCCCHHHCCCcc--cccCCCCCcCCHHHHHhHHh
Confidence 433 3344443 36889999999999999999999984 789999999998 69999999999999999999
Q ss_pred cCccCceEEeEEEecCCCccccccCCCCCceeeCCC----CeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEe
Q 042318 308 RGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAES----GKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQ 377 (407)
Q Consensus 308 ~G~~rKrLv~l~~~~~~g~~~~~~~~~g~~v~~~~~----g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~ 377 (407)
+|.+||||+++.+.+. +..+++|++|+...+ ++.||.|||+. .++|||||+.+++ ..|+++.|.
T Consensus 887 ~~~~krrlvgl~~~~~-----~~~~~~g~~v~~~~~~~~~~~~vG~VTS~~~sp~lg~~iaLa~v~~~~~-~~G~~v~v~ 960 (985)
T TIGR01372 887 VAEDRKQLVGLLPLDP-----QRRLPEGAHIVADDAEAIPMNMQGHVTSSYFSPALGRTIALALVKGGRA-RHGETVYVP 960 (985)
T ss_pred cCCCceEEEEEEEeCC-----CCCCCCCCEEEECCCcccCCCcEEEEeeeccchhcCCeEEEEEECcccc-CCCCEEEEE
Confidence 9889999999987532 134678988885321 47999999986 3689999998877 478888765
Q ss_pred c-CceeEEEEeCCCCCCcc
Q 042318 378 G-QEDVRVEAIRPNWWPAE 395 (407)
Q Consensus 378 ~-~~~~~v~~~~p~~~~~~ 395 (407)
. ++.+.++|..++|++++
T Consensus 961 ~~g~~~~a~v~~~pf~dp~ 979 (985)
T TIGR01372 961 DLGRFIAVEICDPVFFDPE 979 (985)
T ss_pred ECCEEEEEEEeccCCCCCC
Confidence 3 56789999999998765
No 8
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=390.77 Aligned_cols=324 Identities=24% Similarity=0.313 Sum_probs=265.2
Q ss_pred CCcCchhh-hhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCcc
Q 042318 12 KSIPSIFR-ALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASP 90 (407)
Q Consensus 12 ~~~p~~~~-~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (407)
.+||..|. +...||.++|+++++||+||+++|.|+||||.+|||+++|||+.++++++ +
T Consensus 27 w~~p~~y~~~v~~Eh~avR~~aGlfDvShmgk~~V~GpdA~~~L~~l~~ndv~kl~~Gr--------------------~ 86 (379)
T COG0404 27 WEMPVWYAKSVMEEHLAVREAAGLFDVSHMGKVEVSGPDAAAFLQRLLTNDVSKLKPGR--------------------A 86 (379)
T ss_pred EecceecCccHHHHHHHHHhcCceEeccCceEEEEECCCHHHHHHHHcccccCcCCCCc--------------------E
Confidence 57999999 79999999999999999999999999999999999999999999998666 6
Q ss_pred ccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcc--cCCCcEEeecC
Q 042318 91 VYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYR--LRSKVEIENVA 168 (407)
Q Consensus 91 ~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~--~~~kV~i~~~s 168 (407)
+|++|||++|+|++|++|||+. +++|+|.+++..+++++.||+++. ...+|++++.+
T Consensus 87 ~Yt~~lne~G~v~dD~~v~rl~---------------------~d~f~lv~~a~~~~~~~~~l~~~~~~~~~~v~~~~~t 145 (379)
T COG0404 87 RYTLMLNEDGGIIDDLIVYRLG---------------------EDRFFLVTNAATAEKDLAWLERHQAGPDLDVTLTSVT 145 (379)
T ss_pred EEeeeECCCCCEEeeEEEEEec---------------------CCeEEEEeCccchHHHHHHHHHhhccCCcceEEeecc
Confidence 9999999999999999999975 689999999999999999999843 24689999999
Q ss_pred CceeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-ccc----ccc
Q 042318 169 EDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEY----VTP 242 (407)
Q Consensus 169 ~~~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~----~~~ 242 (407)
++++.+++|||+|+++++.+...++ .. . +.|....... ..+...+.+++..-++ +||++++ .+. |..
T Consensus 146 ~~~~~lalqGPkAr~il~~~~~~~~-~~-~---l~~~~~~~~~--i~g~~~~~i~R~gyTGE~G~Ei~~p~~~a~~vw~a 218 (379)
T COG0404 146 EDLAVLALQGPKAREVLAKLVDGDL-VE-A---LPFFAFKEVT--IGGGVPVRISRTGYTGELGFEIYVPAEDAAAVWDA 218 (379)
T ss_pred ccEEEEEEECcCHHHHHHHhccccc-cc-c---CCceEEEEEE--ecCCceEEEEeccccCCCeEEEEecHHHHHHHHHH
Confidence 9999999999999999887654322 00 0 1122111100 0111134555444444 8999998 443 445
Q ss_pred cccc-----ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEe
Q 042318 243 LVEA-----DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLP 317 (407)
Q Consensus 243 l~~~-----~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~ 317 (407)
|+++ ..|+|..++++||+|+|++.+|+|++ ++++|+|++|+| +|+++|..|+|++++.|.+.+|. +|++|+
T Consensus 219 L~~aG~~~g~~P~Gl~A~dtLRlE~g~~l~g~d~~-~~~~P~eagl~~--~v~~~k~dFiGk~al~~~k~~g~-~r~lVg 294 (379)
T COG0404 219 LLEAGEKFGVKPCGLGARDTLRLEAGLRLYGQDLD-ETITPLEAGLGW--AVKLDKDDFIGKAALLREKAKGV-RRKLVG 294 (379)
T ss_pred HHHhhhhcCceEeecchhhHhhhhcCccccccccC-CCCCHhhcCcce--EecCCCcCCcCHHHHHhhhhcCC-ceEEEE
Confidence 5554 47999999999999999999999995 789999999999 59999999999999999999998 778999
Q ss_pred EEEecCCCccccccCCCCCceeeCCCCe-eeeEEEecc------CceEEEEEEehhhhcCCCcEE--EecCceeEEEEeC
Q 042318 318 LRFLDNRGNELEQKVAPGSEVIDAESGK-KAGKVTTAL------GCRGLGVLRLEEVLKESGALT--IQGQEDVRVEAIR 388 (407)
Q Consensus 318 l~~~~~~g~~~~~~~~~g~~v~~~~~g~-~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~--v~~~~~~~v~~~~ 388 (407)
+.+++. ...+..|+.|+. .+|+ .||.|||+. .+||||||+.+++ ..|+++. +.+ +.+.++|..
T Consensus 295 l~~~~~-----~~~~~~g~~v~~-~~g~~~vG~VTSg~~Sptlg~~IAla~v~~~~~-~~G~~~~v~i~~-~~~~a~V~~ 366 (379)
T COG0404 295 LKLDDK-----GPVLRGGEPVLD-ADGEVEVGEVTSGTFSPTLGKSIALAYVDSDYA-KPGTELEVEIRG-KRVPARVVK 366 (379)
T ss_pred EEEcCC-----CCCCCCCCeEEe-cCCCEeEEEEeeccccccCCCeeEEEEechhhc-cCCcEEEEEECC-eEEEEEEec
Confidence 988642 125678999984 3567 599999986 4799999999997 5888754 555 678999999
Q ss_pred CCCCCcc
Q 042318 389 PNWWPAE 395 (407)
Q Consensus 389 p~~~~~~ 395 (407)
|+|++++
T Consensus 367 ~pf~dp~ 373 (379)
T COG0404 367 PPFYDPE 373 (379)
T ss_pred CCCcCcc
Confidence 9997764
No 9
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=100.00 E-value=1.8e-48 Score=393.25 Aligned_cols=314 Identities=17% Similarity=0.207 Sum_probs=240.6
Q ss_pred CCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccc
Q 042318 12 KSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPV 91 (407)
Q Consensus 12 ~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (407)
+.||..|.+...||.++|++|+++|+|++++|+|+|+||.+|||+++||||.++.+++ ++
T Consensus 34 ~~~p~~~~~~~~E~~A~R~~~gl~D~S~~~~i~V~G~Da~~fL~~l~t~di~~l~~G~--------------------~~ 93 (368)
T PRK12486 34 MLLPTVFESVEDDYAHLKEHVQVWDVAVERQVEIRGPDAARLVQMLTPRDLRGMKPGQ--------------------CY 93 (368)
T ss_pred eECccccCCHHHHHHHHHhcceEEEcCCcEEEEEECCCHHHHHHHhcccccccCCCCc--------------------EE
Confidence 4699999999999999999999999999999999999999999999999999998766 59
Q ss_pred cccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCce
Q 042318 92 YAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDF 171 (407)
Q Consensus 92 yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~ 171 (407)
||++||++|+|++|++|+|+. +++|||++..+ ..++||+++....++++++.++++
T Consensus 94 yt~~ln~~G~i~~D~~v~r~~---------------------ed~~~l~~~~~---~~~~~l~~~~~~~~~~v~~~~~~~ 149 (368)
T PRK12486 94 YVPIVDETGGMLNDPVALKLA---------------------EDRWWISIADS---DLLLWVKGLANGRKLDVLVVEPDV 149 (368)
T ss_pred EEEEEcCCCcEEeeEEEEEec---------------------CCEEEEEEcCc---cHHHHHHHhhhhcCCcEEEecCCe
Confidence 999999999999999999985 58899988654 457777777654445555566779
Q ss_pred eEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-cc-ccccc----c
Q 042318 172 SCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VE-YVTPL----V 244 (407)
Q Consensus 172 ~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~-~~~~l----~ 244 (407)
+.++++||+|+++++.+...++... .|...... ..++..+.+.+..-.. +||++++ .+ ....+ +
T Consensus 150 ~~l~lqGP~s~~il~~l~~~~l~~~------~~~~~~~~---~i~g~~~~i~R~g~tGE~G~Ei~~~~~~~a~~l~~~L~ 220 (368)
T PRK12486 150 SPLAVQGPKADALMARVFGEAIRDL------RFFRFGYF---DFEGTDLVIARSGYSKQGGFEIYVEGSDLGMPLWDALF 220 (368)
T ss_pred EEEEeECcCHHHHHHHHhcCChhhC------CCceeEEE---EECCcEEEEEeccccCCceEEEEeccHHHHHHHHHHHH
Confidence 9999999999998876543333321 12111100 1233444444333333 8899888 33 23333 3
Q ss_pred cccc-----ccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCC-CCcchhHHHHhhhcCccCceEEeE
Q 042318 245 EADK-----ETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKG-CYVGQELIARTHHRGVIRKRLLPL 318 (407)
Q Consensus 245 ~~~~-----~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KG-CYvGQE~vaR~~~~G~~rKrLv~l 318 (407)
+++. +.+. +..+|+|+|+|.+|+|+. ++.+|+|+||+| .|+|+|+ ||+|||+++|++.+|. +||+++|
T Consensus 221 ~aG~~~~~~~~~~--~~~~RlE~G~~~~g~D~~-~~~~P~EagL~~--~v~~~k~~~FiGkeal~r~~~~g~-~rrlvgl 294 (368)
T PRK12486 221 EAGKDLNVRAGCP--NLIERIEGGLLSYGNDMT-RDNTPHECGLGR--FCNTQTDIGCIGKDALLRVAKEGP-QKQIRGI 294 (368)
T ss_pred hcccccCcccccC--hhHhHHhcccccccccCC-CCCChHHCCCce--EEcCCCCCCCcCHHHHHHHHhcCC-CeEEEEE
Confidence 3322 2232 334699999999999995 688999999998 5999997 9999999999998886 8999999
Q ss_pred EEecCCCccccccCC-CCCceeeCCCCeeeeEEEeccC------ceEEEEEEehhhhcCCCcEEEec-CceeEEEEeCCC
Q 042318 319 RFLDNRGNELEQKVA-PGSEVIDAESGKKAGKVTTALG------CRGLGVLRLEEVLKESGALTIQG-QEDVRVEAIRPN 390 (407)
Q Consensus 319 ~~~~~~g~~~~~~~~-~g~~v~~~~~g~~vG~vtS~~~------~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~~p~ 390 (407)
++... ..... .+++|+ .+|+.||.|||+.. ++|||||+.++. ..|++++|+. ++.+.+++..+|
T Consensus 295 ~~~~~-----~~~~~~~~~~V~--~~g~~VG~vTS~~~sp~l~~~Iala~v~~~~~-~~g~~l~v~~~~~~~~a~v~~~P 366 (368)
T PRK12486 295 KIGGE-----RIPPCDRAWPLL--AGDNRVGQVTSAAYSPDFQTNVAIGMVRMTHW-DPGTGLEVETPDGMRPATVREGF 366 (368)
T ss_pred EECCC-----CCCCcCCceEEe--eCCeEEEEEeccCcCcccCceEEEEEEChhhc-CCCCEEEEEECCceEEEEEeCCC
Confidence 87531 11221 235677 47899999999874 799999998877 5888887763 456899999999
Q ss_pred CC
Q 042318 391 WW 392 (407)
Q Consensus 391 ~~ 392 (407)
|+
T Consensus 367 f~ 368 (368)
T PRK12486 367 WI 368 (368)
T ss_pred CC
Confidence 85
No 10
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=100.00 E-value=1.4e-45 Score=360.79 Aligned_cols=286 Identities=33% Similarity=0.463 Sum_probs=213.7
Q ss_pred CCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEE
Q 042318 29 NAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFL 108 (407)
Q Consensus 29 ~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v 108 (407)
.....+++|+++++|+|+|+||.+|||+|+||||..+..++ .+|+++||+||||++|+++
T Consensus 11 ~~~~~l~~l~~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~--------------------~~~~a~l~~qGrv~~~~~~ 70 (305)
T COG0354 11 ETPLTLVLLSDRALIRVSGADAEKFLQGQLTNDVSALAEGQ--------------------STLAALLTPQGRVLFDFRL 70 (305)
T ss_pred ccccEEEecCCceeEEEECCCHHHHHhHHHHHhHhhcccCc--------------------eeeeeEECCCceEEEEEEE
Confidence 34577899999999999999999999999999999998766 5999999999999999999
Q ss_pred eCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCccccchhh
Q 042318 109 YAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQ 188 (407)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a~~~l~~~ 188 (407)
|+. ++.|+++++++..+.++++|++|++++||+|.+.+ ..++++.|.++...+...
T Consensus 71 ~~~----------------------~d~~~l~~~~~~~~~~l~~L~kY~~~skv~i~~~~--~~~i~v~~~~~~~~~~~~ 126 (305)
T COG0354 71 YRR----------------------GDGLYLDTDKSVLEALLKRLKKYALRSKVTIAPSD--LVLIGVAGEEAAEALAVD 126 (305)
T ss_pred EEe----------------------CCeEEEEcchhhcHHHHHHHHhceecccceEecCC--ceeEEEeeccccchhhcc
Confidence 997 48899999999999999999999999999999865 678899998766433211
Q ss_pred cccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccccCcccccccccccccccccccChHHHHHHHHHhCCccCC
Q 042318 189 KNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLDLGESSNLVEYVTPLVEADKETDEMNYLLCRLEQGVAEGS 268 (407)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~G~~~~~~~~~~~l~~~~~~~g~~~~~~lRiE~G~~~~g 268 (407)
. ..+|.... . . ..+. +..+... .. .-............+...|+.+||++|+|...
T Consensus 127 ~-~~~~~~~~-------~--------~--~~~~-l~~~~~~-~~----~~~~~~~~~~~~~~~~~~w~~lri~~G~p~~~ 182 (305)
T COG0354 127 F-PALPKQWR-------A--------A--GRFL-LDLPVPR-LL----QLVPKLALPQALEASLDQWLALRIRAGIPGID 182 (305)
T ss_pred c-cccccccc-------c--------c--ccce-eccchhh-hh----hhhhhccccccccccHHHHHHHHHHcCCCccc
Confidence 0 01111000 0 0 0000 0011000 00 00011112223456678999999999999988
Q ss_pred CCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEEEecCCCccccccCCCCCceeeCCCCee--
Q 042318 269 TEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKK-- 346 (407)
Q Consensus 269 ~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~~~~~~g~~~~~~~~~g~~v~~~~~g~~-- 346 (407)
.+. .++++|||+||+.++||||+||||+|||+|||++++|.+||||+++++.. ..++.|++|. .++++
T Consensus 183 ~~~-~~~~iPqevnl~~~~gISF~KGCYvGQE~VAR~~~rG~~kRrl~~l~~d~-------~~p~~g~~i~--a~~~~~~ 252 (305)
T COG0354 183 DAT-SEDFIPQEVNLDALGGISFKKGCYVGQETVARAKYRGTNKRRLVLLALDA-------SLPEAGEEIL--AGGEEVG 252 (305)
T ss_pred chh-ccccChhhhCccccCcEeccCcccccHHHhhHHHhcCCCceeEEEEEeCC-------CCCCCCCeee--cCCCcce
Confidence 876 68999999999999999999999999999999999999999999998742 1578999998 46777
Q ss_pred eeEEEeccCceEEEEEEehhhhcCCCcEEEecCceeEEEEeCCCCCCcc
Q 042318 347 AGKVTTALGCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPAE 395 (407)
Q Consensus 347 vG~vtS~~~~igLAlvr~~~~~~~~~~l~v~~~~~~~v~~~~p~~~~~~ 395 (407)
+|.|+|..+.-++|+++.+.....+.++.+.+ +.+....|+|....
T Consensus 253 ~G~v~s~~~~~~~~l~~l~~~l~~~~~~~v~~---~~~~~~~~~~~~~~ 298 (305)
T COG0354 253 LGTVLSAVGLGPVALIRLKVVLDNGLAIDVGG---RIANLALPPWVRLP 298 (305)
T ss_pred eeeEEecccCcchhHHHHHHhhcccchhhhcc---cccccccccccccc
Confidence 99999988753344444444434556665544 45556666765443
No 11
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-41 Score=320.80 Aligned_cols=324 Identities=18% Similarity=0.189 Sum_probs=253.7
Q ss_pred CCCcCchhhh--hhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCC
Q 042318 11 PKSIPSIFRA--LHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESA 88 (407)
Q Consensus 11 ~~~~p~~~~~--~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
-++||.+|.. ...+|..+|+.+++||+||+..++|+|+|+++||+.++|.|+..|.+++|
T Consensus 46 g~smpvqy~d~s~~dshl~tr~n~~lfDVSHmlq~~v~G~d~v~fLes~ttad~~~L~~g~G------------------ 107 (401)
T KOG2770|consen 46 GYSMPVQYKDQSIIDSHLHTRENVSLFDVSHMLQSRVSGKDRVAFLESLTTADFEGLPEGSG------------------ 107 (401)
T ss_pred ccccceeeccccchhhhhhhhhcceEEeehhheeeeecccchhHHhhhccccchhccCCCCc------------------
Confidence 4799999997 55899999999999999999999999999999999999999999998885
Q ss_pred ccccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCC-----cE
Q 042318 89 SPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSK-----VE 163 (407)
Q Consensus 89 ~~~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~k-----V~ 163 (407)
..|.|+||+|++++|.+|++.. ++++|++++++..+..+.+++.+....| |+
T Consensus 108 --tlsvFtne~ggiiDd~ii~k~~---------------------~~~ly~VsnAgC~ekd~~~~k~~~~a~ks~gkDv~ 164 (401)
T KOG2770|consen 108 --TLSVFTNETGGIIDDLIITKVD---------------------ENELYIVSNAGCQEKDEALLKDHFFAWKSKGKDVS 164 (401)
T ss_pred --eeEEEEcCCCceeeeeEEEeec---------------------CCEEEEEeccchHHHHHHHHHHHHHhhhhccceee
Confidence 8999999999999999999985 6899999999999999999998766554 55
Q ss_pred EeecCCceeEEEEecCCccccchhhcc--cccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-ccc
Q 042318 164 IENVAEDFSCWQRFGGKLSENSSLQKN--QRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEY 239 (407)
Q Consensus 164 i~~~s~~~~~~~~~Gp~a~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~ 239 (407)
++-++ .-+.+++|||.+.++++.... .+|.. ..|+..-.. ...+..++.+-+-.-++ .||++.+ .+.
T Consensus 165 ~~~~~-~r~l~A~Qgp~~akvlq~l~~k~~DL~~------l~fg~~~~~--~~~G~~~~~vtr~gytgEDGfeisv~~~~ 235 (401)
T KOG2770|consen 165 WETLD-GRSLLALQGPEAAKVLQKLLSKLGDLSK------LPFGQSQVY--DFKGGPGCRVTRGGYTGEDGFEISVPPEG 235 (401)
T ss_pred EEEec-ccchhhhcChHHHHHHHHhhccccchhc------ccccceEEE--EecCCCceEEeccccccCCceEEecCCch
Confidence 54443 345788999999888876433 33322 134321100 01222334432222233 7888888 444
Q ss_pred ccccc----c--cccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCC--CCcchhHHHHhhhcCcc
Q 042318 240 VTPLV----E--ADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKG--CYVGQELIARTHHRGVI 311 (407)
Q Consensus 240 ~~~l~----~--~~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KG--CYvGQE~vaR~~~~G~~ 311 (407)
+..+| + ...++|..||+.||||+|++.+|.|+ +++++|.|++|.|. -++-.+| ||.|+|.+.+.-..|.+
T Consensus 236 Av~la~~LLa~~~vkp~Gl~ArDsLRLeaGKOGyg~di-d~~~tpvEa~L~W~-i~krrR~~~~f~Ga~~I~~qLk~~~~ 313 (401)
T KOG2770|consen 236 AVDLAETLLANPVVKPAGLGARDSLRLEAGLCLYGSDI-DEETTPVEAGLSWV-IGKRRRGTYDFPGAEVILKQLKDGGI 313 (401)
T ss_pred hHHHHHHHhhCCceeecccchhhhhhhhcCCcccCccc-ccccChhhheeeee-eeeccccccCCCcHHHHHHHhhcCCc
Confidence 44433 3 24799999999999999999999999 68999999999995 4466777 99999999987777767
Q ss_pred CceEEeEEEecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEe--cCceeE
Q 042318 312 RKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQ--GQEDVR 383 (407)
Q Consensus 312 rKrLv~l~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~--~~~~~~ 383 (407)
+||.|+|.+.. ..+.++|.+|+++ +|++||.|||++ .|+|||||+..+. +.|+.+.|. + +...
T Consensus 314 ~~RrvGl~~~~------~p~ar~gs~I~~~-~g~kVG~vTSg~~sptl~kniamgYV~k~~~-~~Gtkv~v~vr~-k~~~ 384 (401)
T KOG2770|consen 314 SRRRVGLNLSA------KPPARSGSAIFVD-DGTKVGQVTSGCPSPTLGKNIAMGYVKKGYH-KIGTKVLVKVRN-KLYP 384 (401)
T ss_pred ceEEEeeeccC------CCCCCCCCeeEcC-CCceEeeEccCCCCCCcccceeEEEeecccc-CCCCEEEEEecC-cccc
Confidence 89999998642 1346889999974 489999999997 4799999999998 689887654 4 4678
Q ss_pred EEEeCCCCCCcc
Q 042318 384 VEAIRPNWWPAE 395 (407)
Q Consensus 384 v~~~~p~~~~~~ 395 (407)
+.+.+=||.+..
T Consensus 385 ~~VskmPfV~t~ 396 (401)
T KOG2770|consen 385 AEVSKMPFVPTN 396 (401)
T ss_pred eEEEeccccccc
Confidence 888888887643
No 12
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-36 Score=309.43 Aligned_cols=312 Identities=19% Similarity=0.223 Sum_probs=251.6
Q ss_pred CCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccc
Q 042318 12 KSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPV 91 (407)
Q Consensus 12 ~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (407)
|.-|..|-...+|+.++|+.++++|+|.++++.|+|+||.++||.|+++|+..- .| ..+
T Consensus 498 f~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~G~da~e~ld~LfSanv~~~---vg------------------~tv 556 (856)
T KOG2844|consen 498 FRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDITGQDAVELLDYLFSANVDVP---VG------------------STV 556 (856)
T ss_pred ccCCcchhhhHHHHHHHHhhceEeeccccceeeeccHHHHHHHHHHhhcCCCCC---CC------------------cee
Confidence 555777877889999999999999999999999999999999999999999754 22 269
Q ss_pred cccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhccc--CCCcEEeecCC
Q 042318 92 YAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRL--RSKVEIENVAE 169 (407)
Q Consensus 92 yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~--~~kV~i~~~s~ 169 (407)
||+|||++|++.+||+|.|++ +.+|+|..+..+..+.+.||+++.. +++|.+.|+|+
T Consensus 557 ~T~mln~~Gg~e~D~tvsrl~---------------------~~~f~mia~t~qq~~~~~wi~k~~~~~~~~v~l~DvT~ 615 (856)
T KOG2844|consen 557 YTGMLNPKGGYEADCTVSRLS---------------------PRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTD 615 (856)
T ss_pred eeeeecCCCCeEeeeeeeeec---------------------CCceEEEccchhhhhhHHHHHHHhhccCCceeeeechh
Confidence 999999999999999999997 5899999999999999999999854 57999999999
Q ss_pred ceeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-ccccc----cc
Q 042318 170 DFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVT----PL 243 (407)
Q Consensus 170 ~~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~----~l 243 (407)
++.+++++||.|+.+++.++..++++... +|..+.. ...+..++...+..-.+ +||++++ ++... .+
T Consensus 616 ~~~~l~i~GP~sR~vLqelt~~dls~~~f----p~~~~k~---l~vg~~girairis~~GELG~~Lyip~e~~~~vY~~i 688 (856)
T KOG2844|consen 616 ELGALSIIGPQSRKVLQELTDADLSDDHF----PFLTTKE---LKVGNAGIRAIRISHTGELGWELYIPNEDAVAVYRAI 688 (856)
T ss_pred hhceeeecCchHHHHHHhccCCCCCcccc----Ccceeee---eeccccceEEEEEEeccccceEEEechHHHHHHHHHH
Confidence 99999999999999999887777765421 1221111 12334455555444455 8999888 44332 34
Q ss_pred cccc-----cccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCC-CCcchhHHHHhhhcCccCceEEe
Q 042318 244 VEAD-----KETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKG-CYVGQELIARTHHRGVIRKRLLP 317 (407)
Q Consensus 244 ~~~~-----~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KG-CYvGQE~vaR~~~~G~~rKrLv~ 317 (407)
+.++ ..+|..+.++||||+++..||.|++. +.+|+|+++.+. |+|+|+ +|+|++++..++.+| +|||||.
T Consensus 689 m~AG~~~~l~naGyya~~aLriEK~y~~Wg~dl~~-d~tPlEaGl~f~--vk~k~p~dFiGk~ALeqqra~G-lkkrlV~ 764 (856)
T KOG2844|consen 689 MNAGQEEGLQNAGYYALRALRIEKFYRAWGQDLNP-DTTPLEAGLEFR--VKLKKPADFIGKQALEQQKAEG-LKKRLVC 764 (856)
T ss_pred HhhhhhhccccchhHHHHHHHHHHHHHhhccccCC-CCChhhccceeE--EecCCCccchhHHHHHHHHHhh-hhheEEE
Confidence 4443 56778899999999999999999965 779999999995 999998 899999999999999 5999999
Q ss_pred EEEecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehh--------hhcCCCcEEEecCceeE
Q 042318 318 LRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEE--------VLKESGALTIQGQEDVR 383 (407)
Q Consensus 318 l~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~--------~~~~~~~l~v~~~~~~~ 383 (407)
|++.+. +..+..|+.|+ .||+.||..||+. ..++++||.... ..+...++.+.|. +.+
T Consensus 765 l~l~d~-----d~~~~G~E~I~--rnG~~VG~ttsa~Y~ytl~k~v~~gyV~n~~e~~V~~d~V~sg~yEvdi~Gk-ry~ 836 (856)
T KOG2844|consen 765 LTLDDH-----DPDPWGGEPIY--RNGQVVGNTTSAAYGYTLGKSVCLGYVHNFEEFPVSLDFVGSGEYEVDIAGK-RYP 836 (856)
T ss_pred EEecCC-----CCCccCCccee--eCCEEEeeeeeccceeeecceEEEEEecccccCccCHHHhcCCcEEEEeccc-ccc
Confidence 998754 23488899999 7999999999986 468999998542 2123346777774 344
Q ss_pred E
Q 042318 384 V 384 (407)
Q Consensus 384 v 384 (407)
+
T Consensus 837 a 837 (856)
T KOG2844|consen 837 A 837 (856)
T ss_pred e
Confidence 3
No 13
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=100.00 E-value=7.9e-35 Score=271.40 Aligned_cols=200 Identities=33% Similarity=0.406 Sum_probs=153.8
Q ss_pred eeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeCCCC
Q 042318 34 ASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPP 113 (407)
Q Consensus 34 ~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~ 113 (407)
+||+|++++|+|+|+||.+|||+|+||||.++.+++ ++|+++||+||||++|++|++..
T Consensus 1 l~d~s~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~--------------------~~~~~~l~~~G~v~~d~~v~~~~- 59 (211)
T PF01571_consen 1 LFDLSHRGVIRVSGPDAAKFLQGLLTNDISKLPPGQ--------------------ARYTLFLNPKGRVLDDFFVYRLG- 59 (211)
T ss_dssp EEE-TTSEEEEEESTTHHHHHHHHBSS-GTTS-TTB--------------------EEEEEEE-TTS-EEEEEEEEEEE-
T ss_pred CCCCCCcEEEEEECCCHHHHHHHhhhhhHHhhCCCc--------------------eeEEEEECCCCcEEEEEEEEeec-
Confidence 689999999999999999999999999999997665 69999999999999999999985
Q ss_pred CCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCccccchhhccccc
Q 042318 114 PEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRL 193 (407)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a~~~l~~~~~~~l 193 (407)
+++|+|.++++.++.+++||++|++++||+|+++++++++++++||+|.++++...+.+.
T Consensus 60 --------------------~~~~~l~~~~~~~~~~~~~L~~~~~~~~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~~~~~ 119 (211)
T PF01571_consen 60 --------------------DDEFLLIVPASAADALLEWLKKYILRSDVEIEDVSDDLAVLGLQGPKAAEVLQKLFDEDI 119 (211)
T ss_dssp --------------------TTEEEEEECCTCHHHHHHHHHHHHHHSS-EEEEETTTEEEEEEESTTHHHHHHHHSSSSG
T ss_pred --------------------CceEEEEecchhHHHHHHHHHHhccccCcEEEEcccceeEEEEEcchhhHHHHHhccccc
Confidence 466999999999999999999999999999999999999999999999988765442111
Q ss_pred ccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-cccccccc----cc-----ccccChHHHHHHHHHh
Q 042318 194 PQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTPLV----EA-----DKETDEMNYLLCRLEQ 262 (407)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~l~----~~-----~~~~g~~~~~~lRiE~ 262 (407)
... .|...... .++ .+.+.+.++.. .||++++ .+....+| +. ..++|.++|+.+|||+
T Consensus 120 ~~~------~~~~~~~~----~~~-~~~~~r~~~~g~~g~~l~~~~~~~~~~~~~l~~~g~~~g~~~~g~~~~~~lRie~ 188 (211)
T PF01571_consen 120 EPL------PFFSSREV----GDG-PVLVARTGRTGELGYELIVPAEEAEALWDALLEAGKDFGVRPAGLEAWEALRIEA 188 (211)
T ss_dssp TTS------HTTBEEEE----ETT-EEEEESCBSSSSSEEEEEEEGGGHHHHHHHHHHHHGGGTEEEEEHHHHHHHHHHT
T ss_pred ccc------cccceeee----cCc-eEEEEecccCCCCCEEEEeccchhHHHHHHHHHHHhccCceeccHHHHHHHHHhc
Confidence 111 11111000 223 45666777777 8999888 44444333 32 3788999999999999
Q ss_pred CCccCCCCCCCCCCCccccCcccC
Q 042318 263 GVAEGSTEIPKGEAMPLEYNLAGL 286 (407)
Q Consensus 263 G~~~~g~d~~~~~~~P~E~nl~~l 286 (407)
|+|.+++|+ .+.++|+|+||+|+
T Consensus 189 G~p~~~~d~-~~~~~P~E~~l~w~ 211 (211)
T PF01571_consen 189 GIPLYGQDL-DEEFLPQEANLDWA 211 (211)
T ss_dssp T---TTTSS-CTTS-TTTTTGGGG
T ss_pred CCccccccc-CCCCCHHHcCCCcC
Confidence 999999999 57999999999983
No 14
>TIGR03317 ygfZ_signature folate-binding protein YgfZ. YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.
Probab=99.83 E-value=5.8e-21 Score=147.00 Aligned_cols=65 Identities=49% Similarity=0.914 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEE
Q 042318 254 NYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLR 319 (407)
Q Consensus 254 ~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~ 319 (407)
+|+++|||+|+|.+++|+. ++++|+|+||+++++|||+||||+|||+++|++++|.++|||+++.
T Consensus 2 ~~~~lRlE~g~~~~g~el~-~~~~P~E~gl~~~~~v~~~Kg~yiGqe~l~r~~~~g~~~~~lv~l~ 66 (67)
T TIGR03317 2 AWELLRIAAGIPEGGAETS-GEFLPQELNLDALGGVSFKKGCYVGQEVVARMHYRGKVKRRLVRLR 66 (67)
T ss_pred HHHHHHHHcCCCccccccC-CCCCHhHcCCCccCcEeCCCCCccCHHHHHHHHHcCCCceeEEEee
Confidence 6899999999999999995 7899999999998899999999999999999999998899999875
No 15
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=99.51 E-value=1.1e-13 Score=113.51 Aligned_cols=87 Identities=30% Similarity=0.449 Sum_probs=68.4
Q ss_pred CCCcchhHHHHhhhcCccCceEEeEEEecCCCccccccCCCCCceeeCCCCeeeeEEEeccC------ceEEEEEEehhh
Q 042318 294 GCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTALG------CRGLGVLRLEEV 367 (407)
Q Consensus 294 GCYvGQE~vaR~~~~G~~rKrLv~l~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~~------~igLAlvr~~~~ 367 (407)
|||+|||+++|++.+|..||||++|.++. ...+..|++|+. .+++.||.|||+.. ++|||||+.+++
T Consensus 1 gdfiG~eal~r~~~~g~~rr~lv~l~~~~------~~~~~~g~~v~~-~~g~~vG~vTS~~~sp~~~~~Iala~v~~~~~ 73 (95)
T PF08669_consen 1 GDFIGQEALARQKARGVKRRRLVGLTLDG------DAPPRGGEPVYD-EDGKPVGRVTSGAYSPTLGKNIALAYVDREYA 73 (95)
T ss_dssp S-STTHHHHHHHHHHTTS-EEEEEEEESS------SS--STTCEEEE-TTTEEEEEEEEEEEETTTTEEEEEEEEEGGGG
T ss_pred CCcCCHHHHHHHHhcCCCceEEEEEEECC------ccCCCCCCEEEE-CCCcEEeEEEEEeECCCCCceEEEEEECHHHc
Confidence 79999999999999998789999998752 356889999995 38999999999863 799999999998
Q ss_pred hcCCCcEEEe-cCceeEEEEeC
Q 042318 368 LKESGALTIQ-GQEDVRVEAIR 388 (407)
Q Consensus 368 ~~~~~~l~v~-~~~~~~v~~~~ 388 (407)
..|+++.|. .++.+.+++.+
T Consensus 74 -~~g~~l~v~~~g~~~~a~v~~ 94 (95)
T PF08669_consen 74 -EPGTELEVEIRGKRVPATVVK 94 (95)
T ss_dssp -STTSEEEEEETTEEEEEEEE-
T ss_pred -CCCCEEEEEECCEEEEEEEeC
Confidence 488888775 34556666654
No 16
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.29 E-value=6.2e-07 Score=79.85 Aligned_cols=101 Identities=11% Similarity=-0.107 Sum_probs=69.0
Q ss_pred CceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhh
Q 042318 134 SVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVM 213 (407)
Q Consensus 134 ~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 213 (407)
+++|+|.++.+..+.+++||+++.-..+|.|++++++++++.++||+|+++++.+...++..... .|+.... .
T Consensus 41 ~d~~llv~~~~~~~~~~~~l~~~~~~~~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~----~~~~~~~---~ 113 (152)
T TIGR01375 41 PDEWLIIAPQPEGAVLMAALAAALGPEPHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAF----PVGAGRR---T 113 (152)
T ss_pred CCEEEEEcCccchHHHHHHHHHHhCCCccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccC----CCCcEEE---E
Confidence 58899999999999999999997655469999999999999999999999988755433332100 1111111 1
Q ss_pred hcCCCceEEEecCccc-cCccccc-cccccccc
Q 042318 214 MLDGNGLRILDWIVLD-LGESSNL-VEYVTPLV 244 (407)
Q Consensus 214 ~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~l~ 244 (407)
..++..+.+.+ .+ .||++++ .+....+|
T Consensus 114 ~i~~~~v~i~R---tGE~GfEi~v~~s~a~~lw 143 (152)
T TIGR01375 114 IFGKIAAVIWR---TGEDTFEIIVRRSFAESLW 143 (152)
T ss_pred EEcCeEEEEEE---cCCCeEEEEEEhhHHHHHH
Confidence 22334455544 45 8999888 44444443
No 17
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.30 E-value=0.077 Score=47.08 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=59.8
Q ss_pred CCeeeecCC-ceEEEEECCChhhHhhhhhhccccC--CCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEE
Q 042318 31 GPLASQLKS-RSVVRFSGPDTIKYLQGLLTNDVRK--FGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLF 107 (407)
Q Consensus 31 ~~~~~dls~-~~~i~V~G~Da~~fLq~l~T~dv~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~ 107 (407)
.+.+.|+++ +..|.|+||.|.+.|+.++.-|+.. +.... +..+.+ ++ ..++
T Consensus 68 ~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~--------------------~~~~~i----~~--~~v~ 121 (152)
T TIGR01375 68 PHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGA--------------------GRRTIF----GK--IAAV 121 (152)
T ss_pred ccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCc--------------------EEEEEE----cC--eEEE
Confidence 478899887 8999999999999999998767765 43222 233333 22 2588
Q ss_pred EeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 108 LYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 108 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
|.|.. |+.|-|.++.+.++++.++|..
T Consensus 122 i~RtG---------------------E~GfEi~v~~s~a~~lw~~L~~ 148 (152)
T TIGR01375 122 IWRTG---------------------EDTFEIIVRRSFAESLWHWLVD 148 (152)
T ss_pred EEEcC---------------------CCeEEEEEEhhHHHHHHHHHHH
Confidence 88853 7899999999999999998864
No 18
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=94.04 E-value=0.19 Score=44.50 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=55.3
Q ss_pred CCeeeecCCce-EEEEECCChhhHhhhhhhcccc--CCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEE
Q 042318 31 GPLASQLKSRS-VVRFSGPDTIKYLQGLLTNDVR--KFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLF 107 (407)
Q Consensus 31 ~~~~~dls~~~-~i~V~G~Da~~fLq~l~T~dv~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~ 107 (407)
...+.|+|+.. .|+|+|+.+.+.|.....-|+. .+.++. +..|.| +++ .++
T Consensus 63 ~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~--------------------~a~T~~----~~i--~v~ 116 (147)
T PF04268_consen 63 HASVVDVSDGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGR--------------------AARTSF----AHI--SVI 116 (147)
T ss_dssp SSEEEE-TTTB--EEEESTTHHHHHTTT--S--STTTS-TTE--------------------EEEEEE----TTE--EEE
T ss_pred CeEEEecCCceEEEEEECHHHHHHHHhhCCCCCCcccCCCCc--------------------EEEEee----cCe--EEE
Confidence 45889998865 8999999999999999999997 444433 466665 444 356
Q ss_pred EeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 108 LYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 108 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
|+|.. ++.|.|.+.++.++.+..||..
T Consensus 117 l~r~~---------------------~~~f~l~v~rSfA~~l~~~L~~ 143 (147)
T PF04268_consen 117 LWRDG---------------------EDGFRLLVRRSFAEYLWHWLED 143 (147)
T ss_dssp EEEEE---------------------TTEEEEEEBGGGHHHHHHHHHH
T ss_pred EEEcC---------------------CCEEEEEEECchHHHHHHHHHH
Confidence 66653 5789999999999999999864
No 19
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=93.88 E-value=0.27 Score=41.72 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=55.0
Q ss_pred CCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeCCCCCCcc
Q 042318 38 KSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEK 117 (407)
Q Consensus 38 s~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~~~~~ 117 (407)
+..++|+|+|++|...++.++... ++ ++...|+.+.+.+|.+++++++.-+..+.-.
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~~~~---~~--------------------~r~~~~~~~~~~~~~~iDe~lv~~f~~P~Sy 68 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLFGKS---PK--------------------PRRAYYGTIYDEDGEPIDEVLVLYFPAPRSY 68 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTESSS---TT--------------------TTEEEEEEEECSSTCEEEEEEEEEEBTTCSS
T ss_pred ceEEEEEeEcHHHHHHHHHHhCcc---cc--------------------CcEEEEEEEEcCCCccccceeEEeecCCCcc
Confidence 456899999999999999999222 21 1247899999999999999887765321100
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEecCc--chHHHHHHHHhc
Q 042318 118 LDRTGWSGPSSGSHDRSVEVFADVDGS--VLDELLHTFKKY 156 (407)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~L~~~ 156 (407)
+| ||-+=|.+-.+ ....+++.|-+.
T Consensus 69 ---TG-----------Ed~vEi~~HGg~~v~~~il~~l~~~ 95 (114)
T PF10396_consen 69 ---TG-----------EDVVEIHCHGGPAVVRRILEALLKA 95 (114)
T ss_dssp ---SS-----------SEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred ---cC-----------CCEEEEEcCCCHHHHHHHHHHHHHc
Confidence 12 56666666554 455566655544
No 20
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=88.83 E-value=1.3 Score=46.17 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=59.1
Q ss_pred CCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeCCCCCCcc
Q 042318 38 KSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEK 117 (407)
Q Consensus 38 s~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~~~~~ 117 (407)
+.-++|+|+||+|...+|.++.. +.... +|...|+-+.+++|.+++++++..+.-+.-+
T Consensus 17 ~aI~IvRiSGp~a~~ia~~i~~~-~~~~~--------------------~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SF 75 (454)
T COG0486 17 GAIGIVRISGPDALEIAQKLFGG-LKLPK--------------------PRTAHYGHIKDENGEIIDEVLVLYFKAPNSF 75 (454)
T ss_pred ceEEEEEecCHhHHHHHHHHhCC-CCCCC--------------------CcEEEEEEEEcCCCcEeeeeeEEEEeCCCCc
Confidence 34588999999999999999987 22221 2357999999999999999997766432211
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEecCc--chHHHHHHHHhc
Q 042318 118 LDRTGWSGPSSGSHDRSVEVFADVDGS--VLDELLHTFKKY 156 (407)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~L~~~ 156 (407)
|| ||-.=+.|-.+ ....+++.+-++
T Consensus 76 ---TG-----------EDvvEi~~HGg~~v~~~iL~~~l~~ 102 (454)
T COG0486 76 ---TG-----------EDVVEIQCHGGPVVVNLILELLLKL 102 (454)
T ss_pred ---cc-----------ccEEEEEcCCCHHHHHHHHHHHHHc
Confidence 13 67666777665 455566665554
No 21
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=73.01 E-value=11 Score=39.42 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=55.4
Q ss_pred CCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeCCCCCCcc
Q 042318 38 KSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEK 117 (407)
Q Consensus 38 s~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~~~~~ 117 (407)
+.-++|+|+|++|..-++.++..+. . + . ++...|+.+.++.|.+++++++..+..+.-.
T Consensus 7 ~~i~viRiSG~~a~~i~~~~~~~~~--~-~-~-----------------~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~ 65 (442)
T TIGR00450 7 SAIHIIRLSGPDSLSILKKITNKLN--T-A-S-----------------GMRIQYGHIIDSNNKCKDDELLFKFVAPNSY 65 (442)
T ss_pred ceEEEEEeehHHHHHHHHHHhCCCC--C-C-C-----------------CcEEEEEEEECCCCCEeeeEEEEEEcCCCCc
Confidence 4558999999999999999982111 1 1 1 2346788888889999999987766422111
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEecCc--chHHHHHHHHhc
Q 042318 118 LDRTGWSGPSSGSHDRSVEVFADVDGS--VLDELLHTFKKY 156 (407)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~L~~~ 156 (407)
|| ||-.=+.+-++ ....+++.|-++
T Consensus 66 ---TG-----------EDvvEi~~HGg~~v~~~il~~l~~~ 92 (442)
T TIGR00450 66 ---TG-----------EDVIEIQCHGSMLIVQEILQLCLKS 92 (442)
T ss_pred ---cc-----------ccEEEEECCCCHHHHHHHHHHHHHc
Confidence 12 66666666654 556666666554
No 22
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=68.53 E-value=13 Score=34.30 Aligned_cols=77 Identities=21% Similarity=0.161 Sum_probs=57.9
Q ss_pred eeeecCCc-eEEEEECCChhhHhhhhhhcccc--CCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEe
Q 042318 33 LASQLKSR-SVVRFSGPDTIKYLQGLLTNDVR--KFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLY 109 (407)
Q Consensus 33 ~~~dls~~-~~i~V~G~Da~~fLq~l~T~dv~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~ 109 (407)
.+.|+|++ ..|+|+|+-|...|+.-+..|+. .+..|+ +.-|. -|++- +.|+
T Consensus 104 s~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~--------------------~a~T~----~~~~~--vvl~ 157 (189)
T COG4583 104 SAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGA--------------------AARTI----FGKAA--VVLT 157 (189)
T ss_pred eeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCcc--------------------ceeee----ecceE--EEEE
Confidence 67888886 56899999999999999999994 444443 23333 35543 4555
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhc
Q 042318 110 APPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKY 156 (407)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~ 156 (407)
|.. +|.|-|+|=++.++.+...|..-
T Consensus 158 r~g---------------------~d~fei~V~RSFAe~~w~~L~~a 183 (189)
T COG4583 158 RTG---------------------ADTFEIEVWRSFAESLWHLLLDA 183 (189)
T ss_pred eec---------------------CCeEEEEeehhhHHHHHHHHHHh
Confidence 653 68999999999999999888653
No 23
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=64.42 E-value=17 Score=38.11 Aligned_cols=82 Identities=23% Similarity=0.408 Sum_probs=54.4
Q ss_pred CCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeCCCCCCcc
Q 042318 38 KSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPEEK 117 (407)
Q Consensus 38 s~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~~~~~ 117 (407)
+..++|+|+|++|..-++.++...+ .. ++...|+.+.++ |.+++++++.-+..+.-.
T Consensus 17 ~~i~viRiSG~~a~~~~~~~~~~~~--~~--------------------~~~~~~~~~~~~-~~~iD~~l~~~f~~P~S~ 73 (449)
T PRK05291 17 GGIGIIRISGPDALEIAQKLFGKKL--PK--------------------PRTAHYGHIRDP-GEVIDEVLVLYFPAPNSF 73 (449)
T ss_pred ceEEEEEEEhHHHHHHHHHHhCCCC--CC--------------------CcEEEEEEEecC-CcccceEEEEEecCCCCc
Confidence 4568999999999999999984321 11 234788888875 899999997766422111
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEecCc--chHHHHHHHHhc
Q 042318 118 LDRTGWSGPSSGSHDRSVEVFADVDGS--VLDELLHTFKKY 156 (407)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~L~~~ 156 (407)
|| ||-.=|.+-++ ....+++.|-+.
T Consensus 74 ---TG-----------Ed~vEi~~HG~~~v~~~il~~l~~~ 100 (449)
T PRK05291 74 ---TG-----------EDVVEIQCHGGPAVLNLILELLLAL 100 (449)
T ss_pred ---cC-----------CcEEEEECCCCHHHHHHHHHHHHHc
Confidence 12 56666666654 556666666554
No 24
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=64.12 E-value=5.5 Score=35.18 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=35.2
Q ss_pred CceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCccccchhhccccc
Q 042318 134 SVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRL 193 (407)
Q Consensus 134 ~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a~~~l~~~~~~~l 193 (407)
.++|||..+. ...+...|+.- +.....+.++++.+..|.+.||++.+++...+..+|
T Consensus 39 PdewLl~~~~--~~~~~~~l~~~-l~~~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl 95 (147)
T PF04268_consen 39 PDEWLLLSPD--GEDLAAALAAA-LGGHASVVDVSDGRVWFRLSGPAARDVLAKGCPIDL 95 (147)
T ss_dssp TTEEEEEESS---TCHHHHHHHH-HTTSSEEEE-TTTB--EEEESTTHHHHHTTT--S--
T ss_pred CCEEEEEecC--cchHHHHHHHh-hCCCeEEEecCCceEEEEEECHHHHHHHHhhCCCCC
Confidence 3788888832 23345555543 223678999999999999999999998877654444
No 25
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=59.43 E-value=39 Score=30.87 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=55.8
Q ss_pred CCCeeeecCC-ceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEE
Q 042318 30 AGPLASQLKS-RSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFL 108 (407)
Q Consensus 30 ~~~~~~dls~-~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v 108 (407)
..|-+-++++ ...+.|.||.|.++|+.++..++..+.... +.-. -.| ++++
T Consensus 86 ~~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~----------------------~~~~--~~~----~~~~ 137 (211)
T PF01571_consen 86 SDVEIEDVSDDLAVLGLQGPKAAEVLQKLFDEDIEPLPFFS----------------------SREV--GDG----PVLV 137 (211)
T ss_dssp SS-EEEEETTTEEEEEEESTTHHHHHHHHSSSSGTTSHTTB----------------------EEEE--ETT----EEEE
T ss_pred cCcEEEEcccceeEEEEEcchhhHHHHHhcccccccccccc----------------------eeee--cCc----eEEE
Confidence 6788899987 999999999999999999844444442111 1111 111 5677
Q ss_pred eCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 109 YAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
.+... +| +..|.|.++.+.+.++.++|-.
T Consensus 138 ~r~~~-------~g-----------~~g~~l~~~~~~~~~~~~~l~~ 166 (211)
T PF01571_consen 138 ARTGR-------TG-----------ELGYELIVPAEEAEALWDALLE 166 (211)
T ss_dssp ESCBS-------SS-----------SSEEEEEEEGGGHHHHHHHHHH
T ss_pred Eeccc-------CC-----------CCCEEEEeccchhHHHHHHHHH
Confidence 77641 22 6889999999999999998843
No 26
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=57.08 E-value=33 Score=35.21 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=58.9
Q ss_pred CCeeeec-CCceEEEEECCChhhHhhhhhhccc-cCCCCCCCCcccccccCCCCCCCCCCccccccc-cCCCCcEEEEEE
Q 042318 31 GPLASQL-KSRSVVRFSGPDTIKYLQGLLTNDV-RKFGEPAGKREKTSTLTTPNLPYESASPVYAAL-LTPQGKFLYDLF 107 (407)
Q Consensus 31 ~~~~~dl-s~~~~i~V~G~Da~~fLq~l~T~dv-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~-Ln~kGrv~~D~~ 107 (407)
.+-+.+. .+++.|.|.||.|.+.|+.++..|. ..+. .+... .+--|+. +++
T Consensus 138 ~v~~~~~t~~~~~lalqGPkAr~il~~~~~~~~~~~l~------------------------~~~~~~~~i~g~~--~~~ 191 (379)
T COG0404 138 DVTLTSVTEDLAVLALQGPKAREVLAKLVDGDLVEALP------------------------FFAFKEVTIGGGV--PVR 191 (379)
T ss_pred ceEEeeccccEEEEEEECcCHHHHHHHhccccccccCC------------------------ceEEEEEEecCCc--eEE
Confidence 4555555 5889999999999999999998885 4441 22222 2333444 789
Q ss_pred EeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhc
Q 042318 108 LYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKY 156 (407)
Q Consensus 108 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~ 156 (407)
|.|..- +| |..|-|.++...+..+.+.|..-
T Consensus 192 i~R~gy-------TG-----------E~G~Ei~~p~~~a~~vw~aL~~a 222 (379)
T COG0404 192 ISRTGY-------TG-----------ELGFEIYVPAEDAAAVWDALLEA 222 (379)
T ss_pred EEeccc-------cC-----------CCeEEEEecHHHHHHHHHHHHHh
Confidence 999742 34 89999999998888888877653
No 27
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=52.22 E-value=27 Score=35.32 Aligned_cols=81 Identities=22% Similarity=0.156 Sum_probs=58.7
Q ss_pred CeeeecCCceEEEEECCChhhHhhhhhh--ccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEe
Q 042318 32 PLASQLKSRSVVRFSGPDTIKYLQGLLT--NDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLY 109 (407)
Q Consensus 32 ~~~~dls~~~~i~V~G~Da~~fLq~l~T--~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~ 109 (407)
+.+--+..++.+.+.||.+++-||.+++ .|+.++.=++ +...+-+|..- |.|.
T Consensus 163 v~~~~~~~r~l~A~Qgp~~akvlq~l~~k~~DL~~l~fg~-----------------------~~~~~~~G~~~--~~vt 217 (401)
T KOG2770|consen 163 VSWETLDGRSLLALQGPEAAKVLQKLLSKLGDLSKLPFGQ-----------------------SQVYDFKGGPG--CRVT 217 (401)
T ss_pred eeEEEecccchhhhcChHHHHHHHHhhccccchhcccccc-----------------------eEEEEecCCCc--eEEe
Confidence 4453455899999999999999999999 8888884333 23445566654 4444
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 110 APPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
|..- +| ||.|-|.++.+.+.++.+.|-.
T Consensus 218 r~gy-------tg-----------EDGfeisv~~~~Av~la~~LLa 245 (401)
T KOG2770|consen 218 RGGY-------TG-----------EDGFEISVPPEGAVDLAETLLA 245 (401)
T ss_pred cccc-------cc-----------CCceEEecCCchhHHHHHHHhh
Confidence 4320 23 7999999999999888887644
No 28
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=38.36 E-value=1.4e+02 Score=30.00 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=53.2
Q ss_pred CCCCeeeecCC-ceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEE
Q 042318 29 NAGPLASQLKS-RSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLF 107 (407)
Q Consensus 29 ~~~~~~~dls~-~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~ 107 (407)
+..|-+.|+++ ...+.|.||.|.+.|+.+..-|+..+.+.. ..-...+ .|. +++
T Consensus 130 ~~~V~i~d~~~~~~~l~l~GP~a~~~l~~~~~~~l~~~~~~~--------------------~~~~~~~--~~~---~~~ 184 (359)
T PRK00389 130 GFGVEVTDRSDDLAMIAVQGPKAREKLQKLTDADLSELKPFF--------------------GAQGAEV--GGG---DVL 184 (359)
T ss_pred cCCEEEEECCCCEEEEEEECccHHHHHHHhcccchhhccccc--------------------eeeEEEE--CCe---EEE
Confidence 44688888876 899999999999999988655554331111 0111111 121 356
Q ss_pred EeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 108 LYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 108 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
+.|.+. +| +..|.|.++.+.+..+.+.|..
T Consensus 185 i~r~~~-------~g-----------e~g~el~~~~~~~~~l~~~L~~ 214 (359)
T PRK00389 185 VARTGY-------TG-----------EDGFEIYLPAEDAEALWDALLE 214 (359)
T ss_pred EEecee-------cC-----------CCeEEEEEchHHHHHHHHHHHH
Confidence 666531 12 6789999998888888877654
No 29
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=34.59 E-value=1.3e+02 Score=30.36 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=55.1
Q ss_pred CCCCCeeeecCC-ceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEE
Q 042318 28 SNAGPLASQLKS-RSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDL 106 (407)
Q Consensus 28 ~~~~~~~~dls~-~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~ 106 (407)
.+..+.+.|++. ...+.|.||+|.+.|+.++..++..+.+-. . ...++-.|+ ++
T Consensus 127 ~~~~v~i~~~t~~~~~l~l~GP~a~~~l~~l~~~~~~~~~~~~---------------------~-~~~~~~~g~---~~ 181 (361)
T TIGR00528 127 AEPFGIEDTQSDDISLLAVQGPKAATILNPLQDQAVEGLKPFF---------------------F-VQEADFSGR---KA 181 (361)
T ss_pred CcCCcEEEECcCCEEEEEeECcCHHHHHHHhcccchhhccccc---------------------c-eeEEEECCc---eE
Confidence 445688888775 789999999999999998876665431100 0 011222332 34
Q ss_pred EEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 107 FLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 107 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
+|.|.+. +| +..|.|.++...+.++.+.|..
T Consensus 182 ~i~r~~~-------~g-----------e~g~el~~~~~~~~~l~~~l~~ 212 (361)
T TIGR00528 182 FIARTGY-------TG-----------EDGYEIALPNEKAADFWRALVE 212 (361)
T ss_pred EEEEcce-------eC-----------CCeEEEEecHHHHHHHHHHHHh
Confidence 6666531 12 6889999998877777777654
No 30
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=33.33 E-value=1.3e+02 Score=30.55 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=52.6
Q ss_pred CCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccc-cCCCCcEEEEEEEe
Q 042318 31 GPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAAL-LTPQGKFLYDLFLY 109 (407)
Q Consensus 31 ~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~-Ln~kGrv~~D~~v~ 109 (407)
.|-+.|+++.+.+.|.||+|.+.|+.++ .++..+. .+++- .+-.|. .+++.
T Consensus 138 ~V~i~d~~~~~~l~l~GP~a~~il~~l~-~~~~~~~------------------------~~~~~~~~~~g~---~~~i~ 189 (370)
T PRK13579 138 ECEVNPLDDRALLALQGPEAEAVLADLG-PPVAALR------------------------FMDGFEPRLHGV---DCFVS 189 (370)
T ss_pred CcEEEECCCcEEEEEECcCHHHHHHHhh-hhhhcCC------------------------CceEEEEEECCe---EEEEE
Confidence 6888888889999999999999999986 4554331 11110 111221 35666
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 110 APPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
|.+- +| +..|.|.++.+.+.++.+.|..
T Consensus 190 R~~~-------~G-----------e~G~el~~~~~~~~~l~~~l~~ 217 (370)
T PRK13579 190 RSGY-------TG-----------EDGFEISVPADAAEALAEALLA 217 (370)
T ss_pred Eeee-------cC-----------CCEEEEEEcHHHHHHHHHHHHc
Confidence 6531 12 6889999998877777777664
No 31
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=32.40 E-value=1.7e+02 Score=29.72 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=51.2
Q ss_pred CCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeC
Q 042318 31 GPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYA 110 (407)
Q Consensus 31 ~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~ 110 (407)
.+-+.+ .+.+.+.|.||.|.+.|+.++..|+..+.-.. .. .++-.| .+++|.|
T Consensus 141 ~v~~~~-~~~~~l~lqGP~s~~il~~l~~~~l~~~~~~~--------------------~~---~~~i~g---~~~~i~R 193 (368)
T PRK12486 141 DVLVVE-PDVSPLAVQGPKADALMARVFGEAIRDLRFFR--------------------FG---YFDFEG---TDLVIAR 193 (368)
T ss_pred cEEEec-CCeEEEEeECcCHHHHHHHHhcCChhhCCCce--------------------eE---EEEECC---cEEEEEe
Confidence 455555 56889999999999999998766666441111 11 122233 4678888
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCceEEEEecCc-chHHHHHHHHh
Q 042318 111 PPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGS-VLDELLHTFKK 155 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~l~~~L~~ 155 (407)
..- +| |..|-|.++.. .+.++.+.|..
T Consensus 194 ~g~-------tG-----------E~G~Ei~~~~~~~a~~l~~~L~~ 221 (368)
T PRK12486 194 SGY-------SK-----------QGGFEIYVEGSDLGMPLWDALFE 221 (368)
T ss_pred ccc-------cC-----------CceEEEEeccHHHHHHHHHHHHh
Confidence 741 23 67888888765 46677776653
No 32
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=21.89 E-value=1.6e+02 Score=22.51 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=18.2
Q ss_pred cCCCCCceeeCCCCeeeeEEEec
Q 042318 331 KVAPGSEVIDAESGKKAGKVTTA 353 (407)
Q Consensus 331 ~~~~g~~v~~~~~g~~vG~vtS~ 353 (407)
-+.+|++|.. .|-.||+|++.
T Consensus 14 GL~~gs~V~~--~Gv~VG~V~~i 34 (81)
T PF02470_consen 14 GLSVGSPVRY--RGVEVGKVTSI 34 (81)
T ss_pred CCCCcCEEEE--CCEEEEEEEEE
Confidence 4788999984 69999999986
No 33
>PLN02319 aminomethyltransferase
Probab=21.58 E-value=2.2e+02 Score=29.27 Aligned_cols=73 Identities=23% Similarity=0.222 Sum_probs=48.8
Q ss_pred CCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCcccccc-ccCCCCcEEEEEEEeCCCCCCc
Q 042318 38 KSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAA-LLTPQGKFLYDLFLYAPPPPEE 116 (407)
Q Consensus 38 s~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~-~Ln~kGrv~~D~~v~~~~~~~~ 116 (407)
++.+.|.|.||.|.+.|+.++..|+..+. .+++ .++-.| .++++.|.+-
T Consensus 175 ~~~~~l~lqGP~s~~~l~~l~~~~l~~~~------------------------f~~~~~~~i~g---~~v~i~R~g~--- 224 (404)
T PLN02319 175 DERSLLALQGPLAAPVLQHLTKEDLSKMY------------------------FGDFRITDING---ADCFLTRTGY--- 224 (404)
T ss_pred CCeEEEEEECccHHHHHHHhcccchhhCC------------------------CceEEEEEECC---eeEEEEEeee---
Confidence 57789999999999999998766665441 1111 112233 2477777631
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 117 KLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
+| |..|-|.++.+.+.++.+.|..
T Consensus 225 ----tG-----------E~G~El~~p~~~a~~l~~~L~~ 248 (404)
T PLN02319 225 ----TG-----------EDGFEISVPSEHAVDLAKALLE 248 (404)
T ss_pred ----cC-----------CCeEEEEEcHHHHHHHHHHHHh
Confidence 13 6889999998888888777654
No 34
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=21.49 E-value=59 Score=25.67 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=15.7
Q ss_pred CCCCcchhHHHHhhhcCcc
Q 042318 293 KGCYVGQELIARTHHRGVI 311 (407)
Q Consensus 293 KGCYvGQE~vaR~~~~G~~ 311 (407)
+.||+|.|+|.-+...+.+
T Consensus 26 ~~cF~GselVdWL~~~~~~ 44 (81)
T cd04448 26 TNCILGKELVNWLIRQGKA 44 (81)
T ss_pred CcccChHHHHHHHHHcCCC
Confidence 5699999999998877653
No 35
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=21.06 E-value=48 Score=26.25 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=16.2
Q ss_pred CCCCcchhHHHHhhhcCccC
Q 042318 293 KGCYVGQELIARTHHRGVIR 312 (407)
Q Consensus 293 KGCYvGQE~vaR~~~~G~~r 312 (407)
+-||+|+|+|..+-..+.+.
T Consensus 26 ~~cF~GselVdWL~~~~~~~ 45 (81)
T cd04439 26 PKCFLGNEFVSWLLEIGEIS 45 (81)
T ss_pred CceeEhHHHHHHHHHcCCCC
Confidence 56999999999988776543
No 36
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=20.40 E-value=1.5e+02 Score=27.53 Aligned_cols=57 Identities=12% Similarity=0.023 Sum_probs=38.5
Q ss_pred ceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCccccchhhccccc
Q 042318 135 VEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKNQRL 193 (407)
Q Consensus 135 ~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a~~~l~~~~~~~l 193 (407)
|+|+|..+......+..-+..- ..--...|++.....+.+-||+++.++..-+..+|
T Consensus 78 DeW~Vi~~~~~~~~~~aa~A~~--~~~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL 134 (189)
T COG4583 78 DEWLVISEGGEDAAMKAAFASL--EALASAVDVSHGRTAIRISGPKAEAVLAKGCALDL 134 (189)
T ss_pred CeeEEEcCCCccHHHHHHHhhc--cccceeeeccCCeEEEEecCHhHHHHHhcCCcccc
Confidence 7888888877665433333322 12237778888888899999999988876554444
No 37
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=20.31 E-value=59 Score=25.88 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=15.1
Q ss_pred CCCCcchhHHHHhhhcCc
Q 042318 293 KGCYVGQELIARTHHRGV 310 (407)
Q Consensus 293 KGCYvGQE~vaR~~~~G~ 310 (407)
+-||+|+|+|..+...|.
T Consensus 28 ~~cF~GselVdWL~~~~~ 45 (83)
T cd04443 28 KGVFCGCDLVSWLIEVGL 45 (83)
T ss_pred cccccHHHHHHHHHHcCC
Confidence 469999999999887654
Done!