Query 042318
Match_columns 407
No_of_seqs 114 out of 1167
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yx2_A Aminomethyltransferase; 100.0 5.6E-57 1.9E-61 453.4 22.0 318 12-393 27-364 (365)
2 3ttg_A Putative aminomethyltra 100.0 3.8E-56 1.3E-60 445.9 22.7 304 21-392 25-355 (355)
3 1wos_A Aminomethyltransferase; 100.0 1.9E-55 6.6E-60 442.1 22.8 319 11-395 22-359 (364)
4 1vlo_A Aminomethyltransferase; 100.0 2.1E-55 7.3E-60 444.3 18.0 313 12-394 36-371 (381)
5 3gir_A Aminomethyltransferase; 100.0 3.1E-55 1E-59 444.2 18.5 318 11-396 54-390 (393)
6 1wsr_A Aminomethyltransferase; 100.0 2E-54 6.9E-59 436.3 19.2 319 12-395 27-370 (375)
7 1v5v_A Aminomethyltransferase; 100.0 7.5E-54 2.6E-58 435.8 22.1 320 12-394 27-392 (401)
8 1vly_A SPOT PR51, unknown prot 100.0 4.5E-52 1.5E-56 413.8 23.0 295 31-394 30-337 (338)
9 3tfi_A GCVT-like aminomethyltr 100.0 8.5E-52 2.9E-56 416.3 15.5 315 12-392 35-369 (369)
10 1pj5_A N,N-dimethylglycine oxi 100.0 2.5E-50 8.4E-55 443.4 16.1 309 21-394 489-823 (830)
11 2gag_A Heterotetrameric sarcos 100.0 5.4E-49 1.8E-53 438.9 21.8 323 12-394 596-958 (965)
12 2gag_C Heterotetrameric sarcos 99.5 3.1E-15 1E-19 138.9 4.7 155 27-245 27-187 (210)
13 1x31_C Sarcosine oxidase gamma 99.5 5.4E-15 1.8E-19 136.9 5.6 115 26-194 24-142 (206)
14 2gag_C Heterotetrameric sarcos 94.7 0.064 2.2E-06 49.0 7.2 79 31-156 111-192 (210)
15 1x31_C Sarcosine oxidase gamma 94.4 0.07 2.4E-06 48.5 6.8 79 31-156 109-190 (206)
16 3geh_A MNME, tRNA modification 81.5 3.8 0.00013 41.5 8.4 85 38-155 22-109 (462)
17 3gee_A MNME, tRNA modification 76.9 5.5 0.00019 40.5 7.8 86 38-155 28-117 (476)
18 1wos_A Aminomethyltransferase; 73.0 13 0.00044 36.1 9.1 83 29-155 129-212 (364)
19 3tfi_A GCVT-like aminomethyltr 68.5 22 0.00074 34.7 9.6 81 30-155 141-222 (369)
20 1v5v_A Aminomethyltransferase; 68.1 17 0.00059 35.8 8.9 38 28-65 138-176 (401)
21 1wsr_A Aminomethyltransferase; 67.7 13 0.00044 36.3 7.8 82 30-155 140-221 (375)
22 3gir_A Aminomethyltransferase; 60.9 15 0.00052 36.3 6.9 76 31-155 164-239 (393)
23 1yx2_A Aminomethyltransferase; 59.3 25 0.00086 34.0 8.1 82 30-155 133-216 (365)
24 1xzp_A Probable tRNA modificat 55.7 8.4 0.00029 39.2 4.0 53 38-112 46-98 (482)
25 1pj5_A N,N-dimethylglycine oxi 47.2 29 0.00099 37.4 6.8 80 32-155 593-675 (830)
26 1vlo_A Aminomethyltransferase; 42.2 35 0.0012 33.4 6.0 77 31-155 145-225 (381)
27 2gag_A Heterotetrameric sarcos 32.9 1.2E+02 0.0042 33.3 9.0 84 30-155 715-801 (965)
28 3ttg_A Putative aminomethyltra 21.8 2.1E+02 0.0073 27.3 7.6 35 29-63 123-158 (355)
No 1
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=100.00 E-value=5.6e-57 Score=453.43 Aligned_cols=318 Identities=19% Similarity=0.256 Sum_probs=261.1
Q ss_pred CCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccc
Q 042318 12 KSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPV 91 (407)
Q Consensus 12 ~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (407)
++||.+|.+...||.++|++++++|+|++++|+|+|+||.+|||+++||||.++.+++ +.
T Consensus 27 ~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fLq~l~t~dv~~l~~g~--------------------~~ 86 (365)
T 1yx2_A 27 WELPVQFSSIKKEHEAVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGR--------------------AQ 86 (365)
T ss_dssp EEEEEESSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSSCGGGCCTTB--------------------EE
T ss_pred EEhhhhcCCHHHHHHHHHhCcEEEECCCeEEEEEECCCHHHHHHHhcccccccCCCCC--------------------EE
Confidence 5699999999999999999999999999999999999999999999999999997766 69
Q ss_pred cccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCce
Q 042318 92 YAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDF 171 (407)
Q Consensus 92 yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~ 171 (407)
|++|||++|||++|++||+++ +++|||+++++..+++++||++|.. .||+|+++++++
T Consensus 87 y~~~ln~~G~i~~d~~v~r~~---------------------~d~~ll~~~a~~~~~~~~~L~~~~~-~~V~i~d~s~~~ 144 (365)
T 1yx2_A 87 YTAMCYPDGGTVDDLLIYQKG---------------------ENRYLLVINASNIDKDLAWMKEHAA-GDVQIDNQSDQI 144 (365)
T ss_dssp EEEEECTTSCEEEEEEEEEEE---------------------TTEEEEEECGGGHHHHHHHHHHTCC-SSCEEEECTTTE
T ss_pred EEEEECCCCeEEEEEEEEEEe---------------------CCEEEEEECcccHHHHHHHHHhhcc-CCeEEEECcCCE
Confidence 999999999999999999984 4789999999999999999999988 899999999999
Q ss_pred eEEEEecCCccccchhhcccccccchhHHHHHHHhhh-hhhhhhcCCCceEEEecCccc-cCccccc-ccccccccc---
Q 042318 172 SCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACR-LHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTPLVE--- 245 (407)
Q Consensus 172 ~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~l~~--- 245 (407)
++++++||++.++++.+...++... .|.... . ...++..+.+.+..... .||++++ .+....+|+
T Consensus 145 ~~lal~Gp~a~~~L~~l~~~dl~~~------~~~~~~~~---~~~~g~~~~i~R~g~tge~G~el~~~~~~a~~l~~~L~ 215 (365)
T 1yx2_A 145 ALLAVQGPKAEAILKNLTDADVSAL------KPFAFIDE---ADISGRKALISRTGYTGEDGYEIYCRSDDAMHIWKKII 215 (365)
T ss_dssp EEEEEESTTHHHHHHTTBSSCGGGC------CTTBEEEE---EEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHhhCCChhhC------CcceeEEE---EEECCeEEEEEeCcccCCCEEEEEEcHHHHHHHHHHHH
Confidence 9999999999988765543222211 111100 0 01122234444444445 7888887 444444433
Q ss_pred -c-----ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCC-CcchhHHHHhhhcCccCceEEeE
Q 042318 246 -A-----DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGC-YVGQELIARTHHRGVIRKRLLPL 318 (407)
Q Consensus 246 -~-----~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGC-YvGQE~vaR~~~~G~~rKrLv~l 318 (407)
. ..++|..+|+++|||+|+|.+++|+. ++++|+|+||+| +|||+||| |+|||+++|++++| ++|||+++
T Consensus 216 ~ag~~~g~~~~g~~a~~~lRieaG~p~~g~d~~-~~~~P~e~~l~~--~V~~~Kgc~yiGqe~lar~~~~g-~~rrlv~l 291 (365)
T 1yx2_A 216 DAGDAYGLIPCGLGARDTLRFEANIPLYGQELT-RDITPIEAGIGF--AVKHKKESDFFGKSVLSEQKENG-AKRKLVGL 291 (365)
T ss_dssp HHHGGGTEEEECHHHHHHHHHHTTCCCBTTTBS-TTCCTTTTTCGG--GCCTTCSSCCTTHHHHHHHHHHC-CSEEEEEE
T ss_pred hcchhcCceeCCHHHHHHhHHhcCCCcCccccC-CCCCHHHCCccc--eecCCCCCCCcCHHHHHHHHhcC-CCeEEEEE
Confidence 2 36889999999999999999999995 689999999998 79999998 99999999999999 58999999
Q ss_pred EEecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEec-CceeEEEEeCCCC
Q 042318 319 RFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQG-QEDVRVEAIRPNW 391 (407)
Q Consensus 319 ~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~~p~~ 391 (407)
++.. ...+.+|++|+ .+|+.||+|||++ .++|||||+.+++ ..|+++.|.- ++.+.+++.++||
T Consensus 292 ~~~~------~~~~~~g~~v~--~~g~~vG~vtS~~~sp~~~~~iala~v~~~~~-~~g~~~~v~~~g~~~~a~v~~~Pf 362 (365)
T 1yx2_A 292 EMIE------KGIPRHGYEVF--QNGKSVGKVTTGTQSPTLGKNVGLALIDSETS-EIGTVVDVEIRKKLVKAKVVKTPF 362 (365)
T ss_dssp EESS------SCCCCTTCEEE--ETTEEEEEEEEEEEETTTTEEEEEEEEEGGGC-STTCEEEEEETTEEEEEEEECCCC
T ss_pred EECC------CcCCCCCCEEE--ECCeeEEEEEeccccCCCCceEEEEEEChHHc-CCCCEEEEEECCEEEEEEEEcCCC
Confidence 9753 23578899999 4689999999986 2699999999887 4788877652 3568999999999
Q ss_pred CC
Q 042318 392 WP 393 (407)
Q Consensus 392 ~~ 393 (407)
++
T Consensus 363 ~~ 364 (365)
T 1yx2_A 363 YK 364 (365)
T ss_dssp --
T ss_pred CC
Confidence 75
No 2
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=100.00 E-value=3.8e-56 Score=445.86 Aligned_cols=304 Identities=20% Similarity=0.247 Sum_probs=251.3
Q ss_pred hhhccCCCCCCCe-eeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCC
Q 042318 21 LHNQNDRSNAGPL-ASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQ 99 (407)
Q Consensus 21 ~~~~~~~~~~~~~-~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~k 99 (407)
-+.|+.++|++++ ++|+|++++|+|+|+||.+|||+|+||||.++.+++ +.|++|||++
T Consensus 25 eh~e~~avr~~~g~l~DlS~~g~i~v~G~DA~~fLq~l~tndv~~l~~g~--------------------~~y~~~ln~~ 84 (355)
T 3ttg_A 25 EVSDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKS--------------------LSYSFFLNPK 84 (355)
T ss_dssp GGTTHHHHHHSCEEECCSSCCCCEEEESTTHHHHHHTTBSSCCSSCCTTB--------------------EEEEEEECTT
T ss_pred HHHHHHHHHhcCeEEEeCCCcEEEEEECCCHHHHHhhhhhhccccCCCCC--------------------EEEEEEECCC
Confidence 4455589999999 999999999999999999999999999999998766 6999999999
Q ss_pred CcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhccc-CCCcEEeecCCceeEEEEec
Q 042318 100 GKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRL-RSKVEIENVAEDFSCWQRFG 178 (407)
Q Consensus 100 Grv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~-~~kV~i~~~s~~~~~~~~~G 178 (407)
|||++|++||++ +++|||+++++..+++++||++|++ +.||+|+++++++++++++|
T Consensus 85 G~i~~D~~v~r~----------------------~d~~~lv~~a~~~~~~~~~L~~~~~~~~~V~i~d~s~~~~~lalqG 142 (355)
T 3ttg_A 85 ARILFDAWCGNF----------------------EDKIALFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVG 142 (355)
T ss_dssp CCEEEEEEEEEE----------------------TTEEEEECCTTCHHHHHHHHHHTCCTTCCCEEEECGGGEEEEEEES
T ss_pred ceEEEEEEEEEE----------------------CCEEEEEECcccHHHHHHHHHHhcccCCCeEEEECcCCEEEEEEEC
Confidence 999999999997 3789999999999999999999999 68999999999999999999
Q ss_pred CCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-------cCccccc-ccccccc----cc-
Q 042318 179 GKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-------LGESSNL-VEYVTPL----VE- 245 (407)
Q Consensus 179 p~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-------~G~~~~~-~~~~~~l----~~- 245 (407)
|+|.++++.+...+++... |... ..+..++.++|.. +||++++ .+....+ ++
T Consensus 143 P~a~~~l~~l~~~~l~~~~------~~~~---------~~g~~~~~~~r~GsytGE~e~G~el~~p~~~a~~l~~~L~~a 207 (355)
T 3ttg_A 143 PETISVLLSLFDNNFSGSS------FRML---------KNGGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDF 207 (355)
T ss_dssp TTHHHHHHHHSSSCCCSSE------EEEC---------TTSCEEEECCSBCGGGCBCCCEEEEEEEGGGHHHHHHHHHHH
T ss_pred CcHHHHHHHhccCCCccCc------ceee---------ccCcEEEEecCcccccCccCCeEEEEEeHHHHHHHHHHHHhh
Confidence 9999887655433333211 1100 0133455556653 6888887 4443333 33
Q ss_pred ----cccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEEEe
Q 042318 246 ----ADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFL 321 (407)
Q Consensus 246 ----~~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~~~ 321 (407)
...++|..+|+++|||+|+|.+++|+. ++++|+|+||+ +++|+|+||||+|||+++|++++|++||||++|.+.
T Consensus 208 G~~~g~~~~G~~a~d~lRiEaG~p~~g~d~~-~~~~P~Eagl~-~~~V~f~KgcfiGqE~lar~~~~G~~~rrlv~l~~~ 285 (355)
T 3ttg_A 208 TSNKGGVLLDESSYLAYLTEKGIPLFPSELN-DSFFPAEAGLD-SVGVSYNKGCYVGQEPVTRLKFQGHLNRSLAGFRLE 285 (355)
T ss_dssp HHHHTCEECCHHHHHHHHHHTTCCCTTTTSS-TTCCTTTTTCH-HHHCCSSSCCCTTHHHHHHHHHTSCCCEEEEEEEEC
T ss_pred hhhcCCccCCHHHHHHHHHHCCCcccccccC-CCCCHHHcCCC-CCeEECCCCCccCHHHHHHHHhcCCCceEEEEEEEC
Confidence 246899999999999999999999994 78999999998 237999999999999999999999889999999985
Q ss_pred cCCCccccccCCCCCceee--CCCCeeeeEEEeccC------ceEEEEEEehhhhcCCCcEEEecCceeEEEEeCCCCC
Q 042318 322 DNRGNELEQKVAPGSEVID--AESGKKAGKVTTALG------CRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWW 392 (407)
Q Consensus 322 ~~~g~~~~~~~~~g~~v~~--~~~g~~vG~vtS~~~------~igLAlvr~~~~~~~~~~l~v~~~~~~~v~~~~p~~~ 392 (407)
. ...+.+|++|+. ..+|+.||+|||++. ++|||||+.+++ +.|++|.+ ++..++++.++||+
T Consensus 286 ~------~~~~~~g~~v~~~~~~~g~~vG~VtS~~~sp~lg~~iaLa~v~~~~~-~~g~~l~v--g~~~~a~v~~~Pf~ 355 (355)
T 3ttg_A 286 G------GPFPKMEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYIKRNFS-ENGTELLL--PDAQLVRVHSLPFV 355 (355)
T ss_dssp C---------CCSCSSEEEECTTTCCEEEEEEEEEEETTTTEEEEEEEEEGGGC-STTCEEEC--TTCCEEEEECSCCC
T ss_pred C------CCCCCCCCEEEeccCCCCceEEEEEEeeECCCCCCEEEEEEEehhhc-CCCCEEEe--CCeeeEEEeCCCCC
Confidence 3 235788999984 126899999999862 699999999987 47889988 35689999999985
No 3
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=100.00 E-value=1.9e-55 Score=442.09 Aligned_cols=319 Identities=16% Similarity=0.255 Sum_probs=263.5
Q ss_pred CCCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCcc
Q 042318 11 PKSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASP 90 (407)
Q Consensus 11 ~~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (407)
-++||.+|.+...||.++|++++++|+|++++|+|+|+||.+|||+++||||.++.+++ +
T Consensus 22 g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fL~~l~t~dv~~l~~g~--------------------~ 81 (364)
T 1wos_A 22 GWEMPLYYTSIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGK--------------------A 81 (364)
T ss_dssp TEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTE--------------------E
T ss_pred CEEhhhhhCCHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhcccccccCCCCC--------------------E
Confidence 45799999999999999999999999999999999999999999999999999997665 6
Q ss_pred ccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCc
Q 042318 91 VYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAED 170 (407)
Q Consensus 91 ~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~ 170 (407)
.|++|||++|||++|++||+++ +++|||+++++.++++++||++|+++.||+|++++++
T Consensus 82 ~yt~~ln~~G~i~~d~~v~r~~---------------------~d~~ll~~~a~~~~~~~~~L~~~~~~~~V~i~d~s~~ 140 (364)
T 1wos_A 82 IYSVMCNENGGIIDDLVVYKVS---------------------PDEALMVVNAANIEKDFNWIKSHSKNFDVEVSNISDT 140 (364)
T ss_dssp EEEEEECTTSCEEEEEEEEEEE---------------------TTEEEEEECGGGHHHHHHHHHTTCTTSSCEEEECGGG
T ss_pred EEEEEECCCCeEEEEEEEEEEe---------------------CCEEEEEECcccHHHHHHHHHHhccCCCEEEEECcCC
Confidence 9999999999999999999984 4789999999999999999999998889999999999
Q ss_pred eeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-ccccccccc---
Q 042318 171 FSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTPLVE--- 245 (407)
Q Consensus 171 ~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~l~~--- 245 (407)
+++++++||++.++++.+...+++.. .|..... ...++..+.+.+..... .||++++ .+....+|+
T Consensus 141 ~~~l~l~Gp~a~~~L~~l~~~dl~~l------~~~~~~~---~~~~g~~~~i~R~g~tge~G~ei~~~~~~a~~l~~~L~ 211 (364)
T 1wos_A 141 TALIAFQGPKAQETLQELVEDGLEEI------AYYSFRK---SIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALM 211 (364)
T ss_dssp EEEEEEESTTHHHHHGGGBSSCSTTS------CTTBEEE---EEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEEECcCHHHHHHHhhCCCcccc------CccceEE---EEECCeEEEEEecCCCCCCeEEEEEeHHHHHHHHHHHH
Confidence 99999999999988765543233211 1111100 01222234444444334 7898888 444444433
Q ss_pred -c-----ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEE
Q 042318 246 -A-----DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLR 319 (407)
Q Consensus 246 -~-----~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~ 319 (407)
. ..++|..+|+++|||+|+|.+++|+. ++++|+|+||++ +|||+|| |+|||+++|++++ +||||++++
T Consensus 212 ~ag~~~g~~~~g~~a~~~lRie~G~p~~g~d~~-~~~~P~e~~l~~--~V~~~Kg-yiGqe~lar~~~~--~~rrlv~l~ 285 (364)
T 1wos_A 212 NLLRKIDGRPAGLGARDVCRLEATYLLYGQDMD-ENTNPFEVGLSW--VVKLNKD-FVGKEALLKAKEK--VERKLVALE 285 (364)
T ss_dssp HHHHHHTCEECCHHHHHHHHHHTTCCCBTTTBC-TTSCGGGGTCGG--GCCTTSC-CTTHHHHHHHHHT--CCEEEEEEE
T ss_pred hcchhcCceeCCHHHHhhhhHhcCCcCcccccC-CCCCHHHCCccc--ccCCCCC-CcCHHHHHHHHhc--cCeEEEEEE
Confidence 2 36899999999999999999999995 789999999998 7999999 9999999999999 699999999
Q ss_pred EecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEe--cCceeEEEEeCCCC
Q 042318 320 FLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQ--GQEDVRVEAIRPNW 391 (407)
Q Consensus 320 ~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~--~~~~~~v~~~~p~~ 391 (407)
+.+ ...+.+|++|+. +|+.||+|||++ .++|||||+.+ + ..|+++.|. +++.+.+++.++||
T Consensus 286 ~~~------~~~~~~g~~v~~--~g~~vG~vtS~~~sp~~g~~iala~v~~~-~-~~g~~l~v~~~~~~~~~a~v~~~Pf 355 (364)
T 1wos_A 286 LSG------KRIARKGYEVLK--NGERVGEITSGNFSPTLGKSIALALVSKS-V-KIGDQLGVVFPGGKLVEALVVKKPF 355 (364)
T ss_dssp ESS------SCCCCTTCEEEE--TTEEEEEEEEEEEETTTTEEEEEEEEETT-C-CTTCEEEEEETTTEEEEEEEECSCS
T ss_pred ECC------CcCCCCCCEEEE--CCeEEEEEEeceecCcCCceEEEEEEccc-c-CCCCEEEEEeCCCEEEEEEEEccCC
Confidence 853 235788999994 689999999985 27999999998 6 578888765 33568999999999
Q ss_pred CCcc
Q 042318 392 WPAE 395 (407)
Q Consensus 392 ~~~~ 395 (407)
|+..
T Consensus 356 ~~~~ 359 (364)
T 1wos_A 356 YRGS 359 (364)
T ss_dssp CCCS
T ss_pred CCcc
Confidence 9763
No 4
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=100.00 E-value=2.1e-55 Score=444.29 Aligned_cols=313 Identities=18% Similarity=0.179 Sum_probs=257.3
Q ss_pred CCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCC-CCCCCCcccccccCCCCCCCCCCcc
Q 042318 12 KSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKF-GEPAGKREKTSTLTTPNLPYESASP 90 (407)
Q Consensus 12 ~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (407)
++||.+|.+...||.++|++++++|+|++++|+|+|+||.+|||+|+||||.++ .+++ +
T Consensus 36 ~~~p~~y~~~~~E~~avr~~~gl~DlS~~g~i~v~G~DA~~fLq~l~t~dv~~l~~~g~--------------------~ 95 (381)
T 1vlo_A 36 WMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGK--------------------A 95 (381)
T ss_dssp EEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCGGGCCSTTB--------------------E
T ss_pred EEcccccCCHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhccccccccCCCCC--------------------E
Confidence 469999999999999999999999999999999999999999999999999999 7666 6
Q ss_pred ccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCc
Q 042318 91 VYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAED 170 (407)
Q Consensus 91 ~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~ 170 (407)
.|++|||++|||++|++||++. +++|||+++++.++++++||++|+++.||+|++ +++
T Consensus 96 ~yt~~ln~~G~i~~D~~v~r~~---------------------~d~~~lv~~a~~~~~~~~~L~~~~~~~~V~i~d-s~~ 153 (381)
T 1vlo_A 96 LYSGMLNASGGVIDDLIVYYFT---------------------EDFFRLVVNSATREKDLSWITQHAEPFGIEITV-RDD 153 (381)
T ss_dssp EEEEEECTTSCEEEEEEEEEEE---------------------TTEEEEEECGGGHHHHHHHHHHHHGGGTCEEEE-CTT
T ss_pred EEEEEECCCCcEEEEEEEEEEe---------------------CCEEEEEECcccHHHHHHHHHHhccCCceEEEE-CCC
Confidence 9999999999999999999985 478999999999999999999999888999999 999
Q ss_pred eeEEEEecCCccccchhhc----ccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-cccccccc
Q 042318 171 FSCWQRFGGKLSENSSLQK----NQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTPLV 244 (407)
Q Consensus 171 ~~~~~~~Gp~a~~~l~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~l~ 244 (407)
+++++++||+|.++++.+. ..+++.. .|.... .. + .+.+.+..... .||++++ .+....+|
T Consensus 154 ~~~lalqGP~a~~~l~~l~~~~~~~~l~~~------~~~~~~-----~~-g-~~~i~R~gytGe~G~ei~~~~~~a~~l~ 220 (381)
T 1vlo_A 154 LSMIAVQGPNAQAKAATLFNDAQRQAVEGM------KPFFGV-----QA-G-DLFIATTGYTGEAGYEIALPNEKAADFW 220 (381)
T ss_dssp EEEEEEESTTHHHHHHTTCCHHHHHHHTTC------CSSBEE-----EE-T-TEEEECCCSSSSCEEEEEEEHHHHHHHH
T ss_pred EEEEEEECccHHHHHHHhhccccCCCcccC------CcceeE-----Ee-c-cEEEEecCCCCCCEEEEEEeHHHHHHHH
Confidence 9999999999998776542 1111110 111000 11 2 44555444444 7899887 44333443
Q ss_pred c----c-ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCC--CCcchhHHHHhhhcCccCceEEe
Q 042318 245 E----A-DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKG--CYVGQELIARTHHRGVIRKRLLP 317 (407)
Q Consensus 245 ~----~-~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KG--CYvGQE~vaR~~~~G~~rKrLv~ 317 (407)
+ . ..++|..+|+++|||+|+|.+++|+. ++++|+|+||+| +|||+|| ||+|||+++|++++|. + |+++
T Consensus 221 ~~L~~~g~~p~G~~a~d~LRiEaG~p~~g~d~~-~~~~P~EagL~~--~V~~~Kg~~cfiGqE~lar~~~~G~-~-rlv~ 295 (381)
T 1vlo_A 221 RALVEAGVKPCGLGARDTLRLEAGMNLYGQEMD-ETISPLAANMGW--TIAWEPADRDFIGREALEVQREHGT-E-KLVG 295 (381)
T ss_dssp HHHHHTTCEECCHHHHHHHHHHTTCCCBTTTBC-TTSCGGGTTCGG--GCCCCSTTCCCTTHHHHHHHHHHCC-C-EEEE
T ss_pred HHHHhcCCcccCHHHHHHHHHHcCCCcccccCC-CCCChhhCCccc--eeECCCCCCCCcCHHHHHHHHhcCC-C-EEEE
Confidence 3 3 47899999999999999999999995 789999999998 7999999 9999999999999997 4 8889
Q ss_pred EEEecCCCccccccCCCCCceeeCCC-Ce-eeeEEEeccC------ceEEEEEEehhhhcCCCcEEEec-CceeEEEEeC
Q 042318 318 LRFLDNRGNELEQKVAPGSEVIDAES-GK-KAGKVTTALG------CRGLGVLRLEEVLKESGALTIQG-QEDVRVEAIR 388 (407)
Q Consensus 318 l~~~~~~g~~~~~~~~~g~~v~~~~~-g~-~vG~vtS~~~------~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~~ 388 (407)
+.+.+ ...+.+|++|+.+.+ |+ .||+|||++. ++|||||+.+ .|+++.|.. ++.+.+++.+
T Consensus 296 l~~~~------~~~~~~g~~v~~~~~~g~~~vG~VtS~~~sp~lg~~iala~v~~~----~g~~l~v~~~g~~~~a~v~~ 365 (381)
T 1vlo_A 296 LVMTE------KGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEG----IGETAIVQIRNREMPVKVTK 365 (381)
T ss_dssp EEECS------SSCCCTTCEEEEECTTCCEEEEEEEEEEEETTTTEEEEEEEECTT----CCSEEEEEETTEEEEEEEEC
T ss_pred EEECC------CcCCCCCCEEEECCCCCCeeEEEEEEeeeCCCCCceEEEEEEEcC----CCCEEEEEECCEEEEEEEec
Confidence 98753 235788999985211 78 9999999862 7999999886 567777652 3568999999
Q ss_pred CCCCCc
Q 042318 389 PNWWPA 394 (407)
Q Consensus 389 p~~~~~ 394 (407)
+|||+.
T Consensus 366 ~Pf~~~ 371 (381)
T 1vlo_A 366 PVFVRN 371 (381)
T ss_dssp SCCEET
T ss_pred CCCCCC
Confidence 999875
No 5
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=100.00 E-value=3.1e-55 Score=444.21 Aligned_cols=318 Identities=14% Similarity=0.136 Sum_probs=262.4
Q ss_pred CCCcCchhh-hhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCc
Q 042318 11 PKSIPSIFR-ALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESAS 89 (407)
Q Consensus 11 ~~~~p~~~~-~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
-++||.+|. +...||.++|+++++||+|++++|+|+|+||.+|||+|+||||.++.+++
T Consensus 54 gw~~P~~y~~~~~~E~~avR~~~gl~DvSh~g~i~V~G~DA~~fL~~l~tndv~~l~~G~-------------------- 113 (393)
T 3gir_A 54 GWRMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIAVEGPKAVEFLSYALPVDAALLKIGQ-------------------- 113 (393)
T ss_dssp TEEEEEECTTCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHSSSCTTTSCTTB--------------------
T ss_pred CEecchhhcCCHHHHHHHHHhCeEEEeCCCcEEEEEECCCHHHHhhhhcccccccCCCCc--------------------
Confidence 357899998 89999999999999999999999999999999999999999999998766
Q ss_pred cccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCC
Q 042318 90 PVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAE 169 (407)
Q Consensus 90 ~~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~ 169 (407)
++|++|||++|+|++|++||++. +++|||+++++.++++++||++|..+.+|+| .++
T Consensus 114 ~~yt~~ln~~G~i~dD~~V~rl~---------------------~d~~~lv~~a~~~~~~~~~L~~~~~~~~V~i--~~~ 170 (393)
T 3gir_A 114 SRYSYLLNERAGILDDLILTRLA---------------------ECRFMLVANAGNAQADFAELEKRAFGFECQV--IAL 170 (393)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEE---------------------TTEEEEEECGGGHHHHHHHHHHHTTTSSCEE--EEC
T ss_pred EEEEEEECCCCcEEEEEEEEEec---------------------CCEEEEEECchhHHHHHHHHHhhccCCceEE--EEC
Confidence 69999999999999999999985 5889999999999999999999998889999 567
Q ss_pred ceeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-ccccc----cc
Q 042318 170 DFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVT----PL 243 (407)
Q Consensus 170 ~~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~----~l 243 (407)
++++++++||+|.++++.+.. +++.. .|....... . .+.+.+..... +||++++ .+... .|
T Consensus 171 ~~a~lalqGP~A~~vL~~l~~-~l~~~------~~~~~~~~~---i---~~~i~R~gytGE~G~Ei~~p~~~a~~lw~~L 237 (393)
T 3gir_A 171 ERVLLALQGPQAAAVLADAGL-PGNEL------LFMQGFEPQ---Q---DWFITRSGYTGEDGFEIALPIGCARALAEKL 237 (393)
T ss_dssp CCEEEEEESTTHHHHHHHTTC-CCTTC------CTTBEECSS---T---TCEEESCCSSSSSEEEEEECHHHHHHHHHHH
T ss_pred CEEEEEEECccHHHHHHHhcC-chhhc------ccceeEEEE---E---eEEEEeCCCCCCCeEEEEEEHHHHHHHHHHH
Confidence 899999999999988775543 33211 111110000 0 33444444444 7898887 43333 34
Q ss_pred cc--cccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccC---CCCCcchhHHHHhhhcCccCceEEeE
Q 042318 244 VE--ADKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFD---KGCYVGQELIARTHHRGVIRKRLLPL 318 (407)
Q Consensus 244 ~~--~~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~---KGCYvGQE~vaR~~~~G~~rKrLv~l 318 (407)
++ ...++|..+|+++|||+|+|.+|+|+. ++++|+|+||+| +|+|+ ||||+|||+++|++++|. +||||+|
T Consensus 238 ~~a~g~~p~Gl~A~d~LRiEaG~p~~g~dl~-~~~~P~EagL~~--~V~~~k~~Kg~fiGqeal~r~~~~G~-~rrlvgl 313 (393)
T 3gir_A 238 LGDSRVEWVGLAARDSLRLEAGLCLHGNDIT-PDTTPIDAALTW--AVPKNVREKAQFYGAKAFLESLQKGP-SRCRVGL 313 (393)
T ss_dssp HTSTTEEECCHHHHHHHHHHTTCCCBTTTBC-TTCCTTTTTCGG--GSCHHHHHHCCSTTHHHHHHHHHHCC-SSEEEEE
T ss_pred HhcCCceeccccchhhHHHhcCcccchhhcC-CCCCHHHCCchh--eecCCCCCCCCCcCHHHHHHHHhcCC-CeEEEEE
Confidence 44 247899999999999999999999995 789999999998 69998 899999999999999994 8999999
Q ss_pred EEecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEec-CceeEEEEeCCCC
Q 042318 319 RFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQG-QEDVRVEAIRPNW 391 (407)
Q Consensus 319 ~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~~p~~ 391 (407)
.+.+ ...+.+|++|+. .+|+.||+|||++ .++|||||+.+++ +.|+++.|.- ++.+.++|.++||
T Consensus 314 ~~~~------~~~~~~G~~v~~-~~g~~vG~VTS~~~sp~l~~~iaLa~v~~~~~-~~G~~l~v~i~g~~~~a~v~~~PF 385 (393)
T 3gir_A 314 KPQT------RQPIRAGAVLFD-NEGNRIGVVTSGGFGPSFDGPVAMGYVPVAWK-VEGTEVFTELRGKKIALSVHSLPF 385 (393)
T ss_dssp EESS------SSCCCTTCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEECGGGC-STTCEEEEEETTEEEEEEEECSCS
T ss_pred EECC------CcCCCCCCEEEc-cCCeEEEEEEEEEECCCCCcEEEEEEEcHHHc-CCCCEEEEEECCEEEEEEEecCCC
Confidence 8753 245788999984 3789999999986 3799999999987 4788876643 3568999999999
Q ss_pred CCccc
Q 042318 392 WPAEW 396 (407)
Q Consensus 392 ~~~~~ 396 (407)
++...
T Consensus 386 ~~~~~ 390 (393)
T 3gir_A 386 VEQRY 390 (393)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88653
No 6
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=100.00 E-value=2e-54 Score=436.33 Aligned_cols=319 Identities=15% Similarity=0.174 Sum_probs=259.0
Q ss_pred CCcCchhh-hhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCcc
Q 042318 12 KSIPSIFR-ALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASP 90 (407)
Q Consensus 12 ~~~p~~~~-~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (407)
++||.+|. ....||.++|++++++|+|++++|+|+|+||.+|||+++||||.++.+++ +
T Consensus 27 ~~~p~~y~~~~~~E~~a~r~~~gl~Dls~~g~i~v~G~da~~fLq~l~t~dv~~l~~g~--------------------~ 86 (375)
T 1wsr_A 27 WSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQ--------------------G 86 (375)
T ss_dssp EEEEEECSSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTE--------------------E
T ss_pred EEechhhCCCHHHHHHHHHhCcEEEECCceEEEEEECCCHHHHHHHhcccccCcCCCCC--------------------E
Confidence 46999997 67899999999999999999999999999999999999999999997666 6
Q ss_pred ccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccC-----CCcEEe
Q 042318 91 VYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLR-----SKVEIE 165 (407)
Q Consensus 91 ~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~-----~kV~i~ 165 (407)
+|++|||++|||++|++||++. +++|||+++++..+++++||++|+.+ .+|+|+
T Consensus 87 ~y~~~ln~~G~i~~D~~v~r~~---------------------~d~~~lv~~a~~~~~~~~~L~~~~~~~~~~~~~V~i~ 145 (375)
T 1wsr_A 87 TLSLFTNEAGGILDDLIVTNTS---------------------EGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLE 145 (375)
T ss_dssp EEEEEECTTCCEEEEEEEEECT---------------------TSSEEEEECGGGHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEEECCCCeEEEEEEEEEEc---------------------CCEEEEEeCCccHHHHHHHHHHhhhhhcCCCCeEEEE
Confidence 9999999999999999999985 47899999999999999999999875 689999
Q ss_pred ecCCceeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCc-eEEEecCccc-cCccccc-cccccc
Q 042318 166 NVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNG-LRILDWIVLD-LGESSNL-VEYVTP 242 (407)
Q Consensus 166 ~~s~~~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~-~G~~~~~-~~~~~~ 242 (407)
++ ++++++++||+|.++++.+...+++.. .|..... ...++.. +.+.+....+ .||++++ .+....
T Consensus 146 d~--~~~~lal~GP~a~~vL~~l~~~dl~~l------~~~~~~~---~~~~g~~~~~i~R~g~tGe~G~el~~~~~~a~~ 214 (375)
T 1wsr_A 146 VL--DNALLALQGPTAAQVLQAGVADDLRKL------PFMTSAV---MEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVH 214 (375)
T ss_dssp EC--CCEEEEEESTTHHHHHHTTCSSCGGGC------CTTBEEE---EEETTEEEEEEESCCSSSSSEEEEEECHHHHHH
T ss_pred EC--CEEEEEEECcCHHHHHHhhcCcchhhC------CccceEE---EEECCcceEEEEeCccCCCCeEEEEeeHHHHHH
Confidence 87 688999999999988765543222211 1111100 0112222 4555555455 7899887 443333
Q ss_pred c----cccc--cccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccC---CCCCcchhHHHHhhhcCccCc
Q 042318 243 L----VEAD--KETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFD---KGCYVGQELIARTHHRGVIRK 313 (407)
Q Consensus 243 l----~~~~--~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~---KGCYvGQE~vaR~~~~G~~rK 313 (407)
+ ++.+ .++|..+|+++|||+|+|.+|+|+. ++++|+|+||+| +|||+ ||||+|||+++|++++|. +|
T Consensus 215 l~~~L~~ag~~~p~G~~a~d~lRieaG~p~~g~d~~-~~~~P~Eagl~~--~V~~~~~~Kg~fiGqe~lar~~~~g~-~r 290 (375)
T 1wsr_A 215 LATAILKNPEVKLAGLAARDSLRLEAGLCLYGNDID-EHTTPVEGSLSW--TLGKRRRAAMDFPGAKVIVPQLKGRV-QR 290 (375)
T ss_dssp HHHHHHTSTTEEECCHHHHHHHHHHTTCCCBTTTBC-TTCCTTTTTCGG--GSCHHHHHHTCSTTHHHHHHHHTTCC-SC
T ss_pred HHHHHHhcCCeEeCCHHHHHHHHHhCCcCCcCccCC-CCCChhHCCchh--eecCCCCCCCCCcCHHHHHHHHhcCC-CE
Confidence 3 3333 7899999999999999999999995 789999999998 69999 899999999999999995 89
Q ss_pred eEEeEEEecCCCccccccCCCCCceeeCCCCeeeeEEEeccC------ceEEEEEEehhhhcCCCcEEEec-CceeEEEE
Q 042318 314 RLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTALG------CRGLGVLRLEEVLKESGALTIQG-QEDVRVEA 386 (407)
Q Consensus 314 rLv~l~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~~------~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~ 386 (407)
|++++.. + ...+.+|++|+. .+|+.||+|||++. ++|||||+.+++ ..|+++.|.- ++.+.+++
T Consensus 291 rlv~l~~-~------~~~~~~g~~v~~-~~g~~vG~vtS~~~sp~lg~~iala~v~~~~~-~~g~~~~v~~~g~~~~a~v 361 (375)
T 1wsr_A 291 RRVGLMC-E------GAPMRAHSPILN-MEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYS-RPGTMLLVEVRRKQQMAVV 361 (375)
T ss_dssp EEEEEEE-S------SSCCCTTCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEECGGGC-STTCEEEEEETTEEEEEEE
T ss_pred EEEEEEc-C------CccCCCCCEEEc-CCCcEEEEEecceecCcCCceEEEEEEChHHc-CCCCEEEEEECCEEEEEEE
Confidence 9999954 2 235788999983 26899999999862 799999999887 4788777652 35689999
Q ss_pred eCCCCCCcc
Q 042318 387 IRPNWWPAE 395 (407)
Q Consensus 387 ~~p~~~~~~ 395 (407)
.++|||+..
T Consensus 362 ~~~Pf~~~~ 370 (375)
T 1wsr_A 362 SKMPFVPTN 370 (375)
T ss_dssp ECSCSSCCC
T ss_pred EccCCcCcc
Confidence 999999763
No 7
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=100.00 E-value=7.5e-54 Score=435.75 Aligned_cols=320 Identities=19% Similarity=0.258 Sum_probs=262.1
Q ss_pred CCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccc
Q 042318 12 KSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPV 91 (407)
Q Consensus 12 ~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (407)
++||.+|.+...||.++|++++++|+|++++|+|+|+||.+|||+++||||.++.+++ +.
T Consensus 27 ~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~Da~~fLq~l~t~dv~~l~~g~--------------------~~ 86 (401)
T 1v5v_A 27 WEMPIWYSSIKEEHLAVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTTNDISKPPAIS--------------------GT 86 (401)
T ss_dssp EEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHSSSCTTSSCSSE--------------------EE
T ss_pred EEechhcCCHHHHHHHHHhCEEEEECCCcEEEEEECCCHHHHHHHhhccccCcCCCCC--------------------EE
Confidence 5699999999999999999999999999999999999999999999999999997665 69
Q ss_pred cccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHH----Hhcc--cCCCcEEe
Q 042318 92 YAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTF----KKYR--LRSKVEIE 165 (407)
Q Consensus 92 yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L----~~~~--~~~kV~i~ 165 (407)
|++|||++|||++|++||++. +++|||+++++.++++++|| ++|. .+.||+|+
T Consensus 87 yt~~ln~~G~i~~D~~v~r~~---------------------~d~~ll~~~a~~~~~~~~~L~~~~~~~~~~~~~~V~i~ 145 (401)
T 1v5v_A 87 YTLVLNERGAIKDETLVFNMG---------------------NNEYLMICDSDAFEKLYAWFTYLKRTIEQFTKLDLEIE 145 (401)
T ss_dssp EEEEECTTSCEEEEEEEEEEE---------------------TTEEEEEECTTTHHHHHHHHHHHHHHHHTTSCCCCEEE
T ss_pred EEEEECCCCcEEEEEEEEEec---------------------CCEEEEEECcccHHHHHHHHHHHHHhhhccCCCcEEEE
Confidence 999999999999999999984 47899999999999999999 8887 77899999
Q ss_pred ecCCceeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCcccccc-------
Q 042318 166 NVAEDFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNLV------- 237 (407)
Q Consensus 166 ~~s~~~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~~------- 237 (407)
++++++++++++||++.++++.+...+++.. .|..... ...++..+.+.+.+..+ .||++++.
T Consensus 146 d~s~~~~~lal~GP~a~~vL~~l~~~dl~~~------~~~~~~~---~~~~g~~~~i~R~g~tge~G~ei~~~~~~~~~~ 216 (401)
T 1v5v_A 146 LKTYDIAMFAVQGPKARDLAKDLFGIDINEM------WWFQARW---VELDGIKMLLSRSGYTGENGFEVYIEDANPYHP 216 (401)
T ss_dssp ECTTTEEEEEEESTTHHHHHHHHHSCCGGGS------CTTBEEE---EEETTEEEEEECCCSSSSCEEEEEEECCCTTCS
T ss_pred ECcCCEEEEEEECccHHHHHHHhhCCCchhc------CccceEE---EEeCCeEEEEEeCCCCCCCeEEEEEeccccccc
Confidence 9999999999999999988765433222211 1111100 01223335555566555 78887764
Q ss_pred -------c-cccc----cccc-----ccccChHHHHHHHHHhCCccCCCCCCC--------CCCCccccCcccCCccccC
Q 042318 238 -------E-YVTP----LVEA-----DKETDEMNYLLCRLEQGVAEGSTEIPK--------GEAMPLEYNLAGLNAISFD 292 (407)
Q Consensus 238 -------~-~~~~----l~~~-----~~~~g~~~~~~lRiE~G~~~~g~d~~~--------~~~~P~E~nl~~l~aIsf~ 292 (407)
. .... |+++ ..++|..+|+.+|||+|+|.+++|+.. ++++|+|+||++ +|||+
T Consensus 217 ~~~~~~~~~~a~~l~~~L~~ag~~~g~~p~g~~a~~~lRieaG~p~~g~d~~~~~~~~~~~~~~~P~E~gl~~--~V~f~ 294 (401)
T 1v5v_A 217 DESKRGEPEKALHVWERILEEGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEF--AIYWD 294 (401)
T ss_dssp SGGGCCCCHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGG--GCCTT
T ss_pred cccccccHHHHHHHHHHHHhhhhccCceecChhHhhHHHHhcCCCccccccChhhccccCcCCCChHHCCccc--ccCCC
Confidence 1 1222 2232 368899999999999999999999842 689999999998 69999
Q ss_pred CCCCcchhHHHHhhhcCccCceEEeEEEecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehh
Q 042318 293 KGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEE 366 (407)
Q Consensus 293 KGCYvGQE~vaR~~~~G~~rKrLv~l~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~ 366 (407)
|| |+|||+++|++++|.. |||+++.+.. ...+.+|++|+. +|+.||+|||++ .++|||||+.++
T Consensus 295 Kg-yiGqE~lar~~~~G~~-rrlv~l~~~~------~~~~~~g~~v~~--~g~~vG~VtS~~~sp~~~~~iala~v~~~~ 364 (401)
T 1v5v_A 295 KD-FIGKDALLKQKERGVG-RKLVHFKMID------KGIPREGYKVYA--NGEMIGEVTSGTLSPLLNVGIGIAFVKEEY 364 (401)
T ss_dssp SC-CTTHHHHHHHHHHCCC-EEEEEEEESS------SCCCCTTCEEEE--TTEEEEEEEEEEECTTTCSEEEEEEEEGGG
T ss_pred CC-ccCHHHHHHHHhhCCC-eEEEEEEECC------CCCCCCCCEEEE--CCEEEEEEEeeeEcCCCCceEEEEEEchHH
Confidence 99 9999999999999985 8999999753 235788999994 689999999985 279999999998
Q ss_pred hhcCCCcEEEe-cCceeEEEEeCCCCCCc
Q 042318 367 VLKESGALTIQ-GQEDVRVEAIRPNWWPA 394 (407)
Q Consensus 367 ~~~~~~~l~v~-~~~~~~v~~~~p~~~~~ 394 (407)
+ ..|+++.|. .++.+.+++.++||++.
T Consensus 365 ~-~~g~~l~v~~~g~~~~a~v~~~Pf~~~ 392 (401)
T 1v5v_A 365 A-KPGIEIEVEIRGQRKKAVTVTPPFYDP 392 (401)
T ss_dssp C-STTCEEEEEETTEEEEEEEECSCSSCT
T ss_pred c-CCCCEEEEEECCEEEEEEEEccCCccc
Confidence 7 478888765 24568999999999875
No 8
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=100.00 E-value=4.5e-52 Score=413.81 Aligned_cols=295 Identities=21% Similarity=0.226 Sum_probs=236.9
Q ss_pred CCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeC
Q 042318 31 GPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYA 110 (407)
Q Consensus 31 ~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~ 110 (407)
.++++|+|++++|+|+|+||.+|||+|+||||.++.+++ +.|++|||+||||++|++||+
T Consensus 30 ~~~l~dlS~~~~i~v~G~DA~~fLq~l~tndv~~l~~g~--------------------~~yt~~ln~~G~i~~D~~v~r 89 (338)
T 1vly_A 30 PLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQ--------------------HLLAAHCDAKGKMWSNLRLFR 89 (338)
T ss_dssp CSEEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTC--------------------EEEEEEECTTSCEEEEEEEEE
T ss_pred ceEEEECCCcEEEEEECCCHHHHhcchhhhcccccCCCc--------------------eEEEEEECCCCCEEEEEEEEE
Confidence 489999999999999999999999999999999998766 599999999999999999999
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCccccchhhcc
Q 042318 111 PPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLSENSSLQKN 190 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a~~~l~~~~~ 190 (407)
.. ++|+|+++++.++++++||++|++++||+|++. +++++++++||+|.++++.+..
T Consensus 90 ~~----------------------~~~~lv~~a~~~~~~~~~L~~~~~~~~V~i~~~-~~~~~lal~Gp~a~~~l~~~~~ 146 (338)
T 1vly_A 90 DG----------------------DGFAWIERRSVREPQLTELKKYAVFSKVTIAPD-DERVLLGVAGFQARAALANLFS 146 (338)
T ss_dssp ET----------------------TEEEEEEEHHHHHHHHHHHHTTCSSSSCEEEEE-CSSEEEEEESTTHHHHHHTTSS
T ss_pred eC----------------------CcEEEEecchhhHHHHHHHHHhhhhcceEEEEc-CceEEEEEECCcHHHHHHhhcc
Confidence 84 489999999999999999999998889999986 7899999999999887654322
Q ss_pred cccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-ccccc----cccccccccChHHHHHHHHHhCC
Q 042318 191 QRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVT----PLVEADKETDEMNYLLCRLEQGV 264 (407)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~----~l~~~~~~~g~~~~~~lRiE~G~ 264 (407)
. ++... + .|. ..+ +..++... .+ .||++++ .+... .|++...++|..+|+++|||+|+
T Consensus 147 ~-~~~~~-~---~~~--------~~~--g~~~~~~~-tge~G~el~~~~~~~~~l~~~L~~~~~~~g~~a~~~lRieaG~ 210 (338)
T 1vly_A 147 E-LPSKE-K---QVV--------KEG--ATTLLWFE-HPAERFLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGF 210 (338)
T ss_dssp C-CCBTT-B---CEE--------EET--TEEEEEEC-SSSCEEEEEECHHHHHHHHHHHBTTBEEECHHHHHHHHHHHTC
T ss_pred c-CCCcc-c---cee--------ecC--CeEEEEec-CCCCcEEEEechHHHHHHHHHhhhcCccCCHHHHHHHHHHcCC
Confidence 1 11110 0 010 011 11111111 33 7888777 33333 34445678999999999999999
Q ss_pred ccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEEEecCCCccccccCCCCCceee--CC
Q 042318 265 AEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVID--AE 342 (407)
Q Consensus 265 ~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~~~~~~g~~~~~~~~~g~~v~~--~~ 342 (407)
|.+++|+. ++++|+|+||+++++|||+||||+|||+++|++++|.+|||++.+...+ ...+.+|++|+. +.
T Consensus 211 p~~g~d~~-~~~~P~Eagl~~l~~V~f~KgcyiGqE~lar~~~~G~~rr~l~~l~~~~------~~~~~~g~~v~~~~~~ 283 (338)
T 1vly_A 211 PVIDAANS-GQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSA------SRLPEAGEDLELKMGE 283 (338)
T ss_dssp CCCCGGGT-TSCCGGGGTGGGTTCCCSSSCCCTTHHHHHHTTSTTSCCEEEEEEEECC------SSCCCTTCCEEEEETT
T ss_pred cccccccc-CCcChhhcCccccCCCcCCCcccCCHHHHHHHHhcCCCceEEEEEecCC------CCCCCCCCEeEeccCC
Confidence 99999984 7899999999977799999999999999999999999899999987532 235788999973 22
Q ss_pred CCeeeeEEEecc-----CceEEEEEEehhhhcCCCcEEEecCceeEEEEeCCCCCCc
Q 042318 343 SGKKAGKVTTAL-----GCRGLGVLRLEEVLKESGALTIQGQEDVRVEAIRPNWWPA 394 (407)
Q Consensus 343 ~g~~vG~vtS~~-----~~igLAlvr~~~~~~~~~~l~v~~~~~~~v~~~~p~~~~~ 394 (407)
+++.||+|||++ .++|||+|+.++ ..|+++.|.+ +...+++.++||.+.
T Consensus 284 ~g~~vG~VtS~~~~~~g~~iala~v~~~~--~~g~~l~v~g-~~~~a~v~~~Pf~~~ 337 (338)
T 1vly_A 284 NWRRTGTVLAAVKLEDGQVVVQVVMNNDM--EPDSIFRVRD-DANTLHIEPLPYSLE 337 (338)
T ss_dssp EEEEECEEEEEEECTTSCEEEEEEEETTC--CTTCCEESTT-CSSCEEEECCSSCCC
T ss_pred CCccceEEEEEEECCCCCEEEEEEEeccc--CCCCeEEECC-CCceeEEeCCCCCCC
Confidence 359999999976 269999998876 4788899844 567888889888764
No 9
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=100.00 E-value=8.5e-52 Score=416.32 Aligned_cols=315 Identities=14% Similarity=0.152 Sum_probs=243.3
Q ss_pred CCcCchhhhhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccc
Q 042318 12 KSIPSIFRALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPV 91 (407)
Q Consensus 12 ~~~p~~~~~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (407)
++||.+|.....||.++|++++++|+||+++|+|+|+||.+|||+|+||||.++.+++ ++
T Consensus 35 w~~P~~y~~~~~E~~avR~~~glfDvSh~g~i~v~G~DA~~fL~~l~t~dv~~L~~G~--------------------~~ 94 (369)
T 3tfi_A 35 MLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLMTCRDLSKSKIGR--------------------CY 94 (369)
T ss_dssp EEEEEESSCHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHHHBSSCCTTCCTTB--------------------EE
T ss_pred EEcccccCCHHHHHHHHHcCeEEEeCCCCEEEEEECCCHHHHHhhhcccccccCCCCc--------------------EE
Confidence 3599999999999999999999999999999999999999999999999999998766 69
Q ss_pred cccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcc--cCCCcEEeecCC
Q 042318 92 YAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYR--LRSKVEIENVAE 169 (407)
Q Consensus 92 yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~--~~~kV~i~~~s~ 169 (407)
|++|||++|+|++|++||++. +++|||.++.+ .+..||+++. .+.+|+|++ +
T Consensus 95 yt~~ln~~G~i~dD~~v~r~~---------------------ed~~~l~~~~~---~~~~~l~~~~~~~~~~V~i~~--~ 148 (369)
T 3tfi_A 95 YCPIIDENGNLVNDPVVLKLD---------------------ENKWWISIADS---DVIFFAKGLASGHKFDVKIVE--P 148 (369)
T ss_dssp ECCEECTTSCEEECCEEEEEE---------------------TTEEEEECCSS---CHHHHHHHHHHHHTCCCEEEC--C
T ss_pred EEEEECCCCCEEEEEEEEEec---------------------CCEEEEEECcH---HHHHHHHHhhhhcCCeEEEEE--C
Confidence 999999999999999999985 57899988764 3577888775 356899985 6
Q ss_pred ceeEEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-c-ccccccc--
Q 042318 170 DFSCWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-V-EYVTPLV-- 244 (407)
Q Consensus 170 ~~~~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~-~~~~~l~-- 244 (407)
++++++++||+|.++++.+...+++.. .|...... ...+..+.+.+..-.+ .||++++ . +....+|
T Consensus 149 ~~a~lalqGP~A~~~L~~l~~~~l~~l------~~~~~~~~---~i~g~~~~i~R~gytGE~G~Ei~~~~~~~a~~lw~~ 219 (369)
T 3tfi_A 149 VVDIMAIQGPKSFALMEKVFGKKITEL------KFFGFDYF---DFEGTKHLIARSGWSKQGGYEVYVENTQSGQKLYDH 219 (369)
T ss_dssp SCEEEEEESTTHHHHHHHHHCGGGGGC------CTTBEEEE---EETTEEEEEESCCSSSSCEEEEEECSHHHHHHHHHH
T ss_pred CEEEEEEECccHHHHHHhhcCCchhhC------CCceEEEE---EECCeEEEEEeCccCCCCeEEEEEecHHHHHHHHHH
Confidence 789999999999988875543232211 11111000 1122233333333233 7899888 4 4444444
Q ss_pred --ccccccChH--HH-HHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCC-CCcchhHHHHhhhcCccCceEEeE
Q 042318 245 --EADKETDEM--NY-LLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKG-CYVGQELIARTHHRGVIRKRLLPL 318 (407)
Q Consensus 245 --~~~~~~g~~--~~-~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KG-CYvGQE~vaR~~~~G~~rKrLv~l 318 (407)
+.+.+.|.. .+ ..+|||+|+|.+|+|+ +++++|+|+||+| +|+|+|| ||+|||+++|++++| ++||||+|
T Consensus 220 L~~ag~~~g~~~~~~~~~lRlEaG~~~~g~d~-~~~~~P~Eagl~~--~V~~~Kg~~fiGqeal~r~~~~G-~~rrlvgl 295 (369)
T 3tfi_A 220 LFEVGKEFNVGPGCPNLIERIESALLSYGNDF-DNNDNPFECGFDQ--YVSLDSDINFLGKEKLKEIKLKG-PQKKLRGV 295 (369)
T ss_dssp HHHHTGGGTCEEECCCHHHHHHTTCCCBTTTB-CTTCCGGGTTCGG--GCCCSSSCCCTTHHHHHHHHHHC-CSEEEEEE
T ss_pred HHhhCcccCceeccchhhHHHhcCCCCccccC-CCCCChHHCCchh--hccCCCCCCCcCHHHHHHHHhcC-CCeEEEEE
Confidence 334433321 12 4589999999999999 4789999999998 5999998 999999999999999 58999999
Q ss_pred EEecCCCccccccCCCCCceeeCCCCeeeeEEEecc------CceEEEEEEehhhhcCCCcEEEec-CceeEEEEeCCCC
Q 042318 319 RFLDNRGNELEQKVAPGSEVIDAESGKKAGKVTTAL------GCRGLGVLRLEEVLKESGALTIQG-QEDVRVEAIRPNW 391 (407)
Q Consensus 319 ~~~~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~------~~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~~p~~ 391 (407)
++.+. + ...+.+|++|+ .+|+.||+|||++ .++|||||+.+++ +.|+++.|.- ++.+.+++.++||
T Consensus 296 ~~~~~-~---~~~~~~g~~v~--~~g~~vG~VTS~~~sp~lg~~iala~v~~~~~-~~G~~l~v~i~g~~~~a~v~~~Pf 368 (369)
T 3tfi_A 296 KIDIK-E---ISLTGSKNIYD--ENNNVIGELRSACYSPHFQKVIGIAMIKKSHW-EASQGFKIQINDNTINGNVCDLPF 368 (369)
T ss_dssp EESSS-C---CCCCSCEEEEC--TTCCEEEEEEEEEEETTTTEEEEEEEEEGGGC-STTCEEEEEETTEEEEEEEECSSC
T ss_pred EECCC-C---CCCcCCCCEEE--eCCeEEEEEEeeeECCCCCceEEEEEECHHHc-CCCCEEEEEECCEEEEEEEECCCC
Confidence 98532 1 01224678888 5799999999986 3799999999987 5788876553 3568999999998
Q ss_pred C
Q 042318 392 W 392 (407)
Q Consensus 392 ~ 392 (407)
+
T Consensus 369 ~ 369 (369)
T 3tfi_A 369 I 369 (369)
T ss_dssp C
T ss_pred C
Confidence 5
No 10
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=100.00 E-value=2.5e-50 Score=443.36 Aligned_cols=309 Identities=16% Similarity=0.151 Sum_probs=247.9
Q ss_pred hhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCC
Q 042318 21 LHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQG 100 (407)
Q Consensus 21 ~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kG 100 (407)
...||.++|++++++|+|++++|+|+|+||.+|||+|+|||| ++.+++ ++|++|||++|
T Consensus 489 ~~~E~~a~r~~~gl~d~s~~~~~~v~G~da~~fL~~~~t~dv-~l~~g~--------------------~~y~~~l~~~G 547 (830)
T 1pj5_A 489 AAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQELTTADL-AKKPGA--------------------VTYTLLLDHAG 547 (830)
T ss_dssp HHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHHHBSSCC-CSCTTB--------------------EEEEEEECTTS
T ss_pred HHHHHHHHHhCeEEEEcCcEEEEEEECcCHHHHHHHhccccc-cCCCCc--------------------EEEeEEECCCC
Confidence 568999999999999999999999999999999999999999 887665 69999999999
Q ss_pred cEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCC-------C-cEEeecCCcee
Q 042318 101 KFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRS-------K-VEIENVAEDFS 172 (407)
Q Consensus 101 rv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~-------k-V~i~~~s~~~~ 172 (407)
+|++|++||++. ++.|+| ++.++.+++||++|..+. | |+|++++++++
T Consensus 548 ~i~~d~~v~~~~---------------------~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i~d~s~~~~ 603 (830)
T 1pj5_A 548 GVRSDITVARLS---------------------EDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQVRDTTGGTC 603 (830)
T ss_dssp CEEEEEEEEEEE---------------------TTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEEEECGGGEE
T ss_pred EEEEeEEEEEEe---------------------CCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEEEEccCCEE
Confidence 999999999985 467888 445677999999998764 7 99999999999
Q ss_pred EEEEecCCccccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-cccccc----cccc
Q 042318 173 CWQRFGGKLSENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTP----LVEA 246 (407)
Q Consensus 173 ~~~~~Gp~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~----l~~~ 246 (407)
+++++||+|.++++.+...+++.... .|..... ...++..+.+.+..... +||++++ .+.... |+++
T Consensus 604 ~~~l~Gp~a~~~l~~~~~~dl~~~~~----~~~~~~~---~~~~g~~~~~~r~~~tge~g~ei~~~~~~~~~l~~~l~~a 676 (830)
T 1pj5_A 604 CIGLWGPLARDLVSKVSDDDFTNDGL----KYFRAKN---VVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWDALWQA 676 (830)
T ss_dssp EEEEESTTHHHHHTTTCCSCCSTTTS----CTTBEEE---EEETTEEEEEECCCTTSSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHhcCcCCccccC----CCceEEE---EEECCEEEEEEECcccCCCcEEEEecHHHHHHHHHHHHhh
Confidence 99999999998887654333321100 1111110 01223345555555555 7899888 443333 3332
Q ss_pred -----ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhhhcCccCceEEeEEEe
Q 042318 247 -----DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTHHRGVIRKRLLPLRFL 321 (407)
Q Consensus 247 -----~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~~~G~~rKrLv~l~~~ 321 (407)
..++|..+|+++|||+|+|.+|+|+. ++++|+|+||+| +|+|+||||+|||+++|++++| ++|||++|++.
T Consensus 677 g~~~~~~~~g~~a~~~lRle~G~~~~g~d~~-~~~~P~e~~l~~--~v~~~kg~f~G~e~~~r~~~~g-~~rrlv~l~~~ 752 (830)
T 1pj5_A 677 GQPFGVIAAGRAAFSSLRLEKGYRSWGTDMT-TEHDPFEAGLGF--AVKMAKESFIGKGALEGRTEEA-SARRLRCLTID 752 (830)
T ss_dssp HGGGTCEEECHHHHHHHHHHTTCCCBTTTBC-TTSCTTTTTCGG--GCCTTSSCCTTHHHHTTCCSTT-CSEEEEEEEET
T ss_pred hhhcCCEEehhhhhhhhhhhcCCccccccCC-CCCCHHHCCCcC--eeeCCCCCCCCHHHHHHHHhcC-CCeEEEEEEEe
Confidence 36889999999999999999999995 789999999998 6999999999999999999999 57899999985
Q ss_pred cCCCccccccCCCCCceeeCCCCeeeeEEEeccC------ceEEEEEEehhhhcCCCcEEEec-CceeEEEEeCCCCCCc
Q 042318 322 DNRGNELEQKVAPGSEVIDAESGKKAGKVTTALG------CRGLGVLRLEEVLKESGALTIQG-QEDVRVEAIRPNWWPA 394 (407)
Q Consensus 322 ~~~g~~~~~~~~~g~~v~~~~~g~~vG~vtS~~~------~igLAlvr~~~~~~~~~~l~v~~-~~~~~v~~~~p~~~~~ 394 (407)
+. ...+.+|++|+ .+|+.||+|||++. ++|||||+.+++ . |+++.|.- ++.+.+++.++|||+.
T Consensus 753 ~~-----~~~~~~g~~v~--~~g~~vG~vts~~~sp~~~~~iala~v~~~~~-~-g~~~~v~~~~~~~~a~v~~~pf~~~ 823 (830)
T 1pj5_A 753 DG-----RSIVLGKEPVF--YKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVS-V-GDSVDIEYFGRRITATVTEDPLYDP 823 (830)
T ss_dssp TS-----CCCCCSCCEEE--ETTEEEEECCSEEEETTTTEEEEEEEEETTCC-T-TCEEEEEETTEEEEEEEECSCSSCT
T ss_pred CC-----CCCCCCCCEEe--eCCeEEEEEecceeccccCceEEEEEechhhc-C-CCEEEEEECCEEEEEEEEcCCCcCC
Confidence 31 13467899998 46899999999862 799999999887 4 88887663 4568999999999875
No 11
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=100.00 E-value=5.4e-49 Score=438.90 Aligned_cols=323 Identities=14% Similarity=0.133 Sum_probs=263.1
Q ss_pred CCcCchhh--------hhhhccCCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCC
Q 042318 12 KSIPSIFR--------ALHNQNDRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNL 83 (407)
Q Consensus 12 ~~~p~~~~--------~~~~~~~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~ 83 (407)
++||..|. +...||.++|+++++||+|++++|.|+|+||.+|||+|+||||.++.+++
T Consensus 596 w~~p~~y~~~g~~~~~~~~~E~~avr~~~gl~D~S~~g~i~v~G~da~~fL~~l~t~dv~~l~~g~-------------- 661 (965)
T 2gag_A 596 WKRPWYYPQAGETMDQAVYRESKAVRDSVGMLDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGM-------------- 661 (965)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTB--------------
T ss_pred EeeehhhCCCCcccchhHHHHHHHHHhCeEEEeCCceEEEEEeCcCHHHHHHHhhccCCCcCCCCC--------------
Confidence 46899998 45799999999999999999999999999999999999999999997766
Q ss_pred CCCCCccccccccCCCCcEEEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhccc----C
Q 042318 84 PYESASPVYAALLTPQGKFLYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRL----R 159 (407)
Q Consensus 84 ~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~----~ 159 (407)
+.|++|||++|+|++|++||++. +++|||+++++..+++++||++|+. +
T Consensus 662 ------~~y~~~l~~~G~i~~D~~v~r~~---------------------~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 714 (965)
T 2gag_A 662 ------GRYGVMCKADGMIFDDGVTLRLA---------------------EDRFLLHTTTGGAADVLDWLEEWLQTEWPD 714 (965)
T ss_dssp ------EEEEEEECTTSCEEEEEEEEEEE---------------------TTEEEEEECTTTHHHHHHHHHHHHHHTCTT
T ss_pred ------EEEEEEECCCCcEEEEEEEEEEe---------------------CCEEEEEECcccHHHHHHHHHHHHHhcCCC
Confidence 69999999999999999999985 5789999999999999999999984 4
Q ss_pred CCcEEeecCCceeEEEEecCCccccchhhc-ccccccchhHHHHHHHhhhhhhhhhc-CCCceEEEecCccc-cCccccc
Q 042318 160 SKVEIENVAEDFSCWQRFGGKLSENSSLQK-NQRLPQLAGVLALIVLACRLHMVMML-DGNGLRILDWIVLD-LGESSNL 236 (407)
Q Consensus 160 ~kV~i~~~s~~~~~~~~~Gp~a~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~-~G~~~~~ 236 (407)
.||+|+++++++++++++||+|.++++.+. ..+++.... .|+..... .. ++..+.+++..... +||++++
T Consensus 715 ~~V~i~d~s~~~~~lal~GP~a~~~l~~~~~~~dl~~~~~----~~~~~~~~---~~~~g~~~~~~R~~~tGe~G~ei~~ 787 (965)
T 2gag_A 715 LDVTCTSVTEQLATVAVVGPRSRDVIAKLASTVDVSNEGF----KFMAFKDV---VLDSGIEARISRISFSGELAFEIAV 787 (965)
T ss_dssp SCCEEEECTTTEEEEEEESTTHHHHHHHHCTTSCCSTTTS----CTTBEEEE---ECTTSCEEEEECCCSSSSCEEEEEE
T ss_pred CcEEEEEccCCEEEEEEECcCHHHHHHHhhCCCCCccccC----CCceeEEE---EEcCCCEEEEEeCCccCCCEEEEEE
Confidence 689999999999999999999998887654 223321110 11111110 12 33445566555555 8999888
Q ss_pred -cccccccc----cc-----ccccChHHHHHHHHHhCCccCCCCCCCCCCCccccCcccCCccccCCCCCcchhHHHHhh
Q 042318 237 -VEYVTPLV----EA-----DKETDEMNYLLCRLEQGVAEGSTEIPKGEAMPLEYNLAGLNAISFDKGCYVGQELIARTH 306 (407)
Q Consensus 237 -~~~~~~l~----~~-----~~~~g~~~~~~lRiE~G~~~~g~d~~~~~~~P~E~nl~~l~aIsf~KGCYvGQE~vaR~~ 306 (407)
.+....+| +. ..++|..+|+++|||+|+|.+|+|+. ++++|+|+||+| +|||+|| |+|||+++|++
T Consensus 788 ~~~~~~~l~~~L~~ag~~~g~~p~G~~a~~~lRiE~G~~~~g~d~~-~~~~P~e~gl~~--~V~~~K~-fiGqe~l~r~~ 863 (965)
T 2gag_A 788 PAWHGLRVWEDVYAAGEEFNITPYGTETMHVLRAEKGFIIVGQDTD-GTVTPQDAGMEW--VVSKLKD-FIGNRSYSRAD 863 (965)
T ss_dssp EGGGHHHHHHHHHHHHGGGTCEECCHHHHHHHHHHTTCCCTTTTCC-SSCCTTTTTCGG--GSCSSSC-CTTGGGGGSHH
T ss_pred eHHHHHHHHHHHHhcchhcCceeCCHHHHHHHHHhCCccCcccccC-CCCCHHHCCchh--hcCCCCC-cCCHHHHHHHH
Confidence 44444443 32 36899999999999999999999994 789999999998 7999997 79999999999
Q ss_pred hcCccCceEEeEEEecCCCccccccCCCCCceeeCCCC--------eeeeEEEeccC------ceEEEEEEehhhhcCCC
Q 042318 307 HRGVIRKRLLPLRFLDNRGNELEQKVAPGSEVIDAESG--------KKAGKVTTALG------CRGLGVLRLEEVLKESG 372 (407)
Q Consensus 307 ~~G~~rKrLv~l~~~~~~g~~~~~~~~~g~~v~~~~~g--------~~vG~vtS~~~------~igLAlvr~~~~~~~~~ 372 (407)
++|..|||||+|++.+. ...+.+|++|+. ++ +.||+|||+.. ++|||||+.+++ ..|+
T Consensus 864 ~~g~~rrrlv~l~~~~~-----~~~~~~g~~i~~--~g~~~~~~~~~~vG~vtS~~~sp~lg~~iala~v~~~~~-~~g~ 935 (965)
T 2gag_A 864 NAREDRKQLVSVLPVDK-----SLRLPEGAALVA--SDALASEGITPMEGWVTSSYDSPNLGRTFGLALIKNGRN-RIGE 935 (965)
T ss_dssp HHCSSCEEEEEEEESST-----TCCCCTTCEEEE--TTCCCBTTBCCCCEEEEEEEEETTTTEEEEEEEEETGGG-CTTC
T ss_pred hcCCCceEEEEEEEeCC-----CCCCCCCCEEEE--CCccccccCCcceEEEEeeeEcCCCCceEEEEEEChhhc-CCCC
Confidence 99999999999998531 135778999985 34 48999999862 699999999887 4788
Q ss_pred cEEEec-CceeEEEEeCCCCCCc
Q 042318 373 ALTIQG-QEDVRVEAIRPNWWPA 394 (407)
Q Consensus 373 ~l~v~~-~~~~~v~~~~p~~~~~ 394 (407)
++.|.- ++.+.+++.++|||+.
T Consensus 936 ~~~v~~~~~~~~a~v~~~pf~~~ 958 (965)
T 2gag_A 936 VLKTPVGDQLVDVVVSETVLYDP 958 (965)
T ss_dssp EEEEEETTEEEEEEEECSCCSST
T ss_pred EEEEEECCEEEEEEEEccCCcCC
Confidence 777653 3568999999999875
No 12
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=99.53 E-value=3.1e-15 Score=138.91 Aligned_cols=155 Identities=10% Similarity=-0.053 Sum_probs=109.8
Q ss_pred CCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCcccccc-ccCCCCcE---
Q 042318 27 RSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAA-LLTPQGKF--- 102 (407)
Q Consensus 27 ~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~-~Ln~kGrv--- 102 (407)
..|++++++|+|+++++.|+|+|+.+||+.+ + ..|++ ++++.|++
T Consensus 27 ~~r~~vglfDvShmg~~~v~G~~a~~~l~~l-----------~--------------------~~~g~~l~~~~g~v~~~ 75 (210)
T 2gag_C 27 SVAGRVELREIAFTTQISLRCAPGTQAHAAL-----------A--------------------AATGAGLPAKVGEVAGE 75 (210)
T ss_dssp CBTTTBEEEECCSCEEEEEECCTTSHHHHHH-----------H--------------------HHHSSCCCCSTTBCEEC
T ss_pred cccCcEEEEECCCCcEEEEEeCChhHHHHHH-----------H--------------------HHhCcCCCCCCCEEEEc
Confidence 4799999999999999999999987777553 1 14455 55666766
Q ss_pred EEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCcc
Q 042318 103 LYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKLS 182 (407)
Q Consensus 103 ~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a~ 182 (407)
++|++||++. +++|+|.+++ .+++++||+++.-..+|.++++++++++++++||+|+
T Consensus 76 ~dDl~v~rl~---------------------~d~~llv~na--~~~d~~~l~~~l~~~~v~v~d~s~~~a~lalqGP~A~ 132 (210)
T 2gag_C 76 AQGTAVLWLA---------------------PDEFLATSAE--NTELGGVLSAALGDAPGQVVDLSANRSVLELTGPDAP 132 (210)
T ss_dssp TTSCEEEEEE---------------------TTEEEEEESS--CTTHHHHHHHHHTTSSSEEEECTTTBCCEEEESTTHH
T ss_pred cCCEEEEEEc---------------------CCEEEEEeCc--HHHHHHHHHHhcCcCCEEEEECCCCEEEEEEECHhHH
Confidence 6899999985 5789999988 5788999998864447999999999999999999999
Q ss_pred ccchhhcccccccchhHHHHHHHhhhhhhhhhcCCCceEEEecCccc-cCccccc-ccccccccc
Q 042318 183 ENSSLQKNQRLPQLAGVLALIVLACRLHMVMMLDGNGLRILDWIVLD-LGESSNL-VEYVTPLVE 245 (407)
Q Consensus 183 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~G~~~~~-~~~~~~l~~ 245 (407)
++++.++..++..... .|+..... ...+..+.+.+ .+ .||++++ .+....+|+
T Consensus 133 ~vL~~l~~~dl~~~~~----~~~~~~~~---~v~g~~v~v~R---tGEdGfEI~v~~~~A~~lw~ 187 (210)
T 2gag_C 133 LVLRKSCPADLHPRAF----AVNQAIVT---SVANIPVLLWR---TGEQAWRIMPRASFTEHTVH 187 (210)
T ss_dssp HHHTTTCCSCCSTTTS----CTTBEEEE---EETTEEEEEEE---EETTEEEEEEBGGGHHHHHH
T ss_pred HHHHhhCcccCCcccC----CCCcEEEE---EECCEEEEEEE---eCCCEEEEEEEHHHHHHHHH
Confidence 9988765434432110 12211111 22233444444 55 8999988 555444443
No 13
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=99.52 E-value=5.4e-15 Score=136.88 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=94.6
Q ss_pred CCCCCCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCcccccc-ccCCCCcE--
Q 042318 26 DRSNAGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAA-LLTPQGKF-- 102 (407)
Q Consensus 26 ~~~~~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~-~Ln~kGrv-- 102 (407)
-..+++++++|+|+++++.|+|+||.+||+.+ . ..|++ ++++.|++
T Consensus 24 ~~~~~~vglfDvShmg~~~v~G~~a~~~l~~l-----~--------------------------~~~~~~l~~~~g~~~~ 72 (206)
T 1x31_C 24 VAGERAVTLREVAFTTQLGLRAVPGSTGHAAL-----A--------------------------AATGVGLPAAVGEVAG 72 (206)
T ss_dssp BCSTTCBEEEECCSCEEEEEECCTTSHHHHHH-----H--------------------------HHSSSCCCCSTTBEEE
T ss_pred cCCCCcEEEEECCCCcEEEEEeCChhHHHHHH-----H--------------------------HHhCcCCCCCCCEEEE
Confidence 34678899999999999999999999998664 1 14444 66778888
Q ss_pred -EEEEEEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhcccCCCcEEeecCCceeEEEEecCCc
Q 042318 103 -LYDLFLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKYRLRSKVEIENVAEDFSCWQRFGGKL 181 (407)
Q Consensus 103 -~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~~~~~kV~i~~~s~~~~~~~~~Gp~a 181 (407)
++|++||++. +++|+|.+++ .+++++||+++.-..+|+++++++++++++++||+|
T Consensus 73 ~~dDl~v~rl~---------------------~d~~llv~na--~~~d~~~l~~~l~~~~v~v~d~s~~~a~lalqGP~A 129 (206)
T 1x31_C 73 DVSGTAVLWLG---------------------PDEFLLAAEE--NPALLDTLQGALGQEPGQVLDLSANRSVLQLEGPAA 129 (206)
T ss_dssp CTTSCEEEEEE---------------------TTEEEEEESS--CTHHHHHHHHHHTTSSSEEEECTTTBCCEEEESTTH
T ss_pred ecCCEEEEEEc---------------------CCEEEEEcCc--hHHHHHHHHHhcCcCcEEEEECCCCEEEEEEECHhH
Confidence 8899999985 5789999988 578999999886444699999999999999999999
Q ss_pred cccchhhcccccc
Q 042318 182 SENSSLQKNQRLP 194 (407)
Q Consensus 182 ~~~l~~~~~~~l~ 194 (407)
+++++.++..++.
T Consensus 130 ~~vL~~l~~~dl~ 142 (206)
T 1x31_C 130 ALVLRKSCPADLH 142 (206)
T ss_dssp HHHHTTTCCSCCC
T ss_pred HHHHHhhCcccCC
Confidence 9998876543443
No 14
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=94.71 E-value=0.064 Score=48.97 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=60.1
Q ss_pred CCeeeecCC-ceEEEEECCChhhHhhhhhhccccC--CCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEE
Q 042318 31 GPLASQLKS-RSVVRFSGPDTIKYLQGLLTNDVRK--FGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLF 107 (407)
Q Consensus 31 ~~~~~dls~-~~~i~V~G~Da~~fLq~l~T~dv~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~ 107 (407)
++.+.|+|+ +..|.|.||.|.+.|+.++..|+.. +.... +..+.+ ++ .+++
T Consensus 111 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~--------------------~~~~~v----~g--~~v~ 164 (210)
T 2gag_C 111 PGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQ--------------------AIVTSV----AN--IPVL 164 (210)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTB--------------------EEEEEE----TT--EEEE
T ss_pred CEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCc--------------------EEEEEE----CC--EEEE
Confidence 478899987 8999999999999999997777764 42221 222222 23 2688
Q ss_pred EeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhc
Q 042318 108 LYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKY 156 (407)
Q Consensus 108 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~ 156 (407)
|.|. | |+.|-|.++++.++.+.++|...
T Consensus 165 v~Rt----------G-----------EdGfEI~v~~~~A~~lw~~Ll~a 192 (210)
T 2gag_C 165 LWRT----------G-----------EQAWRIMPRASFTEHTVHWLVDA 192 (210)
T ss_dssp EEEE----------E-----------TTEEEEEEBGGGHHHHHHHHHHH
T ss_pred EEEe----------C-----------CCEEEEEEEHHHHHHHHHHHHHH
Confidence 8884 2 78999999999999999999764
No 15
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=94.42 E-value=0.07 Score=48.52 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=60.1
Q ss_pred CCeeeecCC-ceEEEEECCChhhHhhhhhhccccC--CCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEE
Q 042318 31 GPLASQLKS-RSVVRFSGPDTIKYLQGLLTNDVRK--FGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLF 107 (407)
Q Consensus 31 ~~~~~dls~-~~~i~V~G~Da~~fLq~l~T~dv~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~ 107 (407)
++.+.|+++ +..|.|.||.|.+.|+.++..|+.. +.... +..+.+ ++ .+++
T Consensus 109 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~--------------------~~~~~v----~g--~~v~ 162 (206)
T 1x31_C 109 PGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNR--------------------AITTSL----AN--IPVL 162 (206)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTE--------------------EEEEEE----TT--EEEE
T ss_pred cEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCc--------------------EEEEEE----cC--eEEE
Confidence 478899987 8999999999999999997777764 42221 222222 23 2688
Q ss_pred EeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHhc
Q 042318 108 LYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKKY 156 (407)
Q Consensus 108 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~~ 156 (407)
|.|.. |+.|-|.++++.++.+.++|..-
T Consensus 163 i~Rtg---------------------EdGfEI~v~~~~A~~lw~~L~~a 190 (206)
T 1x31_C 163 LWRTG---------------------EQSWRILPRASFTEHTVHWLIDA 190 (206)
T ss_dssp EEEEE---------------------TTEEEEECBGGGHHHHHHHHHHH
T ss_pred EEEcC---------------------CCeEEEEEEHHHHHHHHHHHHHH
Confidence 99864 68999999999999999999753
No 16
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=81.53 E-value=3.8 Score=41.53 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=57.1
Q ss_pred CCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCC-CCcEEEEEEEeCCCCCCc
Q 042318 38 KSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTP-QGKFLYDLFLYAPPPPEE 116 (407)
Q Consensus 38 s~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~-kGrv~~D~~v~~~~~~~~ 116 (407)
+.-++|+|+||+|...++.++... .+.. ..++...|+.+.++ +|.+++++++..+..+.-
T Consensus 22 ~~i~iiRiSG~~a~~~~~~~~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s 82 (462)
T 3geh_A 22 GSVGIVRVSGSQAIAIAQTLFDAP--GKQV-----------------WESHRILYGYIRHPQTRQIVDEALLLLMKAPRS 82 (462)
T ss_dssp CSCEEEEEESTTHHHHHHHHEECC--SCCC-----------------CCTTEEEEEEECCSSSCCCCEEEEEEEECTTCS
T ss_pred ceEEEEEeEchhHHHHHHHHhCCC--CccC-----------------CCCcEEEEEecccCCCCCCcceEEEEEEcCCCC
Confidence 466899999999999999998542 1110 11345789999995 699999998776642211
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEecCc--chHHHHHHHHh
Q 042318 117 KLDRTGWSGPSSGSHDRSVEVFADVDGS--VLDELLHTFKK 155 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~L~~ 155 (407)
. || ||-.=|.|-.+ ....+++.+-+
T Consensus 83 ~---Tg-----------Ed~~E~~~HGg~~v~~~~l~~~~~ 109 (462)
T 3geh_A 83 Y---TR-----------EDVVEFHCHGGIIAVQQVLQLCLE 109 (462)
T ss_dssp S---SS-----------SCEEEEEECCSSSHHHHHHHHHHH
T ss_pred C---cC-----------CceEEEECCCCHHHHHHHHHHHHH
Confidence 1 12 67777777765 45666666554
No 17
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=76.92 E-value=5.5 Score=40.52 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=55.1
Q ss_pred CCceEEEEECCChhhHhhhhhhcc--ccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeCCCCCC
Q 042318 38 KSRSVVRFSGPDTIKYLQGLLTND--VRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPPPPE 115 (407)
Q Consensus 38 s~~~~i~V~G~Da~~fLq~l~T~d--v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~~~~ 115 (407)
+.-++|+|+|++|...++.++... -.++. ...+|...|+.+.++ |.+++++++..+..+.
T Consensus 28 ~~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~-~~~iD~~l~~~f~~P~ 89 (476)
T 3gee_A 28 GALAIVRISGAGVLDLADRVFRKVHGSGKLA-----------------EAAGYTAHFGRLYDG-EEMVDEVIALVFRAPR 89 (476)
T ss_dssp CSEEEEEEESTTHHHHHHHHEEESSSCCCGG-----------------GCCTTEEEEEEEESS-SCEEEEEEEEEEBTTB
T ss_pred cEEEEEEeechhHHHHHHHHhCccccccccc-----------------CCCCCEEEEEEEecC-CcccceEEEEEecCCC
Confidence 456899999999999999998531 01110 011345789988886 9999999977664211
Q ss_pred ccccCCCCCCCCCCCCCCCceEEEEecCc--chHHHHHHHHh
Q 042318 116 EKLDRTGWSGPSSGSHDRSVEVFADVDGS--VLDELLHTFKK 155 (407)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~L~~ 155 (407)
.. || ||-.=|.|-.+ ....+++.+-+
T Consensus 90 -s~--Tg-----------Ed~~E~~~HGg~~v~~~~l~~~~~ 117 (476)
T 3gee_A 90 -SF--TA-----------EQMVEFTCHGGPVVVGRVLRLMLD 117 (476)
T ss_dssp -SS--SS-----------SCEEEEEEECCHHHHHHHHHHHHH
T ss_pred -CC--CC-----------CCeEEEECCCCHHHHHHHHHHHHH
Confidence 11 12 67777777765 44555555443
No 18
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=72.97 E-value=13 Score=36.13 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCCeeeecCC-ceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEE
Q 042318 29 NAGPLASQLKS-RSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLF 107 (407)
Q Consensus 29 ~~~~~~~dls~-~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~ 107 (407)
+..|-+.|+++ +..+.|.||.|.+.|+.++..|+..+.... ...+ .-.| ..++
T Consensus 129 ~~~V~i~d~s~~~~~l~l~Gp~a~~~L~~l~~~dl~~l~~~~--------------------~~~~---~~~g---~~~~ 182 (364)
T 1wos_A 129 NFDVEVSNISDTTALIAFQGPKAQETLQELVEDGLEEIAYYS--------------------FRKS---IVAG---VETL 182 (364)
T ss_dssp TSSCEEEECGGGEEEEEEESTTHHHHHGGGBSSCSTTSCTTB--------------------EEEE---EETT---EEEE
T ss_pred CCCEEEEECcCCEEEEEEECcCHHHHHHHhhCCCccccCccc--------------------eEEE---EECC---eEEE
Confidence 34688889865 899999999999999999776765542111 1111 1123 2578
Q ss_pred EeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 108 LYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 108 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
|.|..- +| ++.|.|.++.+.++.+.+.|..
T Consensus 183 i~R~g~-------tg-----------e~G~ei~~~~~~a~~l~~~L~~ 212 (364)
T 1wos_A 183 VSRTGY-------TG-----------EDGFELMLEAKNAPKVWDALMN 212 (364)
T ss_dssp EESCCS-------SS-----------SSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEecCC-------CC-----------CCeEEEEEeHHHHHHHHHHHHh
Confidence 888631 12 6899999999999998888764
No 19
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=68.52 E-value=22 Score=34.73 Aligned_cols=81 Identities=7% Similarity=0.061 Sum_probs=56.6
Q ss_pred CCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEe
Q 042318 30 AGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLY 109 (407)
Q Consensus 30 ~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~ 109 (407)
..|-+.+ .++..|.|.||.|.+.|+.++..|+..+.-.. ... .+-.| .+++|.
T Consensus 141 ~~V~i~~-~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~~--------------------~~~---~~i~g---~~~~i~ 193 (369)
T 3tfi_A 141 FDVKIVE-PVVDIMAIQGPKSFALMEKVFGKKITELKFFG--------------------FDY---FDFEG---TKHLIA 193 (369)
T ss_dssp CCCEEEC-CSCEEEEEESTTHHHHHHHHHCGGGGGCCTTB--------------------EEE---EEETT---EEEEEE
T ss_pred CeEEEEE-CCEEEEEEECccHHHHHHhhcCCchhhCCCce--------------------EEE---EEECC---eEEEEE
Confidence 3466655 68899999999999999999877776552111 111 11123 267888
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCceEEEEecC-cchHHHHHHHHh
Q 042318 110 APPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDG-SVLDELLHTFKK 155 (407)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~L~~ 155 (407)
|..- +| |+.|-|.++. +.++++.+.|..
T Consensus 194 R~gy-------tG-----------E~G~Ei~~~~~~~a~~lw~~L~~ 222 (369)
T 3tfi_A 194 RSGW-------SK-----------QGGYEVYVENTQSGQKLYDHLFE 222 (369)
T ss_dssp SCCS-------SS-----------SCEEEEEECSHHHHHHHHHHHHH
T ss_pred eCcc-------CC-----------CCeEEEEEecHHHHHHHHHHHHh
Confidence 8641 23 7899999998 888888888764
No 20
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=68.14 E-value=17 Score=35.81 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=31.9
Q ss_pred CCCCCeeeecCC-ceEEEEECCChhhHhhhhhhccccCC
Q 042318 28 SNAGPLASQLKS-RSVVRFSGPDTIKYLQGLLTNDVRKF 65 (407)
Q Consensus 28 ~~~~~~~~dls~-~~~i~V~G~Da~~fLq~l~T~dv~~l 65 (407)
.+..|-+.|+++ +.++.|.||.|.+.|+.++..|+..+
T Consensus 138 ~~~~V~i~d~s~~~~~lal~GP~a~~vL~~l~~~dl~~~ 176 (401)
T 1v5v_A 138 TKLDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEM 176 (401)
T ss_dssp SCCCCEEEECTTTEEEEEEESTTHHHHHHHHHSCCGGGS
T ss_pred CCCcEEEEECcCCEEEEEEECccHHHHHHHhhCCCchhc
Confidence 344688999965 89999999999999999987787655
No 21
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=67.68 E-value=13 Score=36.32 Aligned_cols=82 Identities=18% Similarity=0.107 Sum_probs=56.6
Q ss_pred CCCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEe
Q 042318 30 AGPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLY 109 (407)
Q Consensus 30 ~~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~ 109 (407)
..|-+.|+ ++..+.|.||.|.+.|+.++..|+..+.... ... .+-.| + .+++|.
T Consensus 140 ~~V~i~d~-~~~~lal~GP~a~~vL~~l~~~dl~~l~~~~--------------------~~~---~~~~g-~-~~~~i~ 193 (375)
T 1wsr_A 140 RDVGLEVL-DNALLALQGPTAAQVLQAGVADDLRKLPFMT--------------------SAV---MEVFG-V-SGCRVT 193 (375)
T ss_dssp CCCEEEEC-CCEEEEEESTTHHHHHHTTCSSCGGGCCTTB--------------------EEE---EEETT-E-EEEEEE
T ss_pred CeEEEEEC-CEEEEEEECcCHHHHHHhhcCcchhhCCccc--------------------eEE---EEECC-c-ceEEEE
Confidence 35788888 8999999999999999999877776542111 111 11112 1 137888
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 110 APPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
|..- +| ++.|.|.++.+.++.+.+.|..
T Consensus 194 R~g~-------tG-----------e~G~el~~~~~~a~~l~~~L~~ 221 (375)
T 1wsr_A 194 RCGY-------TG-----------EDGVEISVPVAGAVHLATAILK 221 (375)
T ss_dssp SCCS-------SS-----------SSEEEEEECHHHHHHHHHHHHT
T ss_pred eCcc-------CC-----------CCeEEEEeeHHHHHHHHHHHHh
Confidence 8641 23 6889999998888888888765
No 22
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=60.87 E-value=15 Score=36.29 Aligned_cols=76 Identities=12% Similarity=0.006 Sum_probs=53.7
Q ss_pred CCeeeecCCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeC
Q 042318 31 GPLASQLKSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYA 110 (407)
Q Consensus 31 ~~~~~dls~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~ 110 (407)
.|-+ ..+++..|.|.||.|.+.|+.++. |+..+.- ++. ....+ +++|.|
T Consensus 164 ~V~i-~~~~~a~lalqGP~A~~vL~~l~~-~l~~~~~------------------------~~~---~~~~i--~~~i~R 212 (393)
T 3gir_A 164 ECQV-IALERVLLALQGPQAAAVLADAGL-PGNELLF------------------------MQG---FEPQQ--DWFITR 212 (393)
T ss_dssp SCEE-EECCCEEEEEESTTHHHHHHHTTC-CCTTCCT------------------------TBE---ECSST--TCEEES
T ss_pred ceEE-EECCEEEEEEECccHHHHHHHhcC-chhhccc------------------------cee---EEEEE--eEEEEe
Confidence 5666 667899999999999999999876 7654421 111 01122 677888
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 111 PPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
..- +| |+.|-|.++.+.+..+.+.|..
T Consensus 213 ~gy-------tG-----------E~G~Ei~~p~~~a~~lw~~L~~ 239 (393)
T 3gir_A 213 SGY-------TG-----------EDGFEIALPIGCARALAEKLLG 239 (393)
T ss_dssp CCS-------SS-----------SSEEEEEECHHHHHHHHHHHHT
T ss_pred CCC-------CC-----------CCeEEEEEEHHHHHHHHHHHHh
Confidence 641 23 7899999998888888877654
No 23
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=59.33 E-value=25 Score=34.00 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=57.2
Q ss_pred CCCeeeecC-CceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccc-cccccCCCCcEEEEEE
Q 042318 30 AGPLASQLK-SRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPV-YAALLTPQGKFLYDLF 107 (407)
Q Consensus 30 ~~~~~~dls-~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-yt~~Ln~kGrv~~D~~ 107 (407)
..|-+.|++ .+.++.|.||.|.+.|+.++..|+..+.... .. .+ .-.| ..++
T Consensus 133 ~~V~i~d~s~~~~~lal~Gp~a~~~L~~l~~~dl~~~~~~~--------------------~~~~~---~~~g---~~~~ 186 (365)
T 1yx2_A 133 GDVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSALKPFA--------------------FIDEA---DISG---RKAL 186 (365)
T ss_dssp SSCEEEECTTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTB--------------------EEEEE---EETT---EEEE
T ss_pred CCeEEEECcCCEEEEEEECcCHHHHHHHhhCCChhhCCcce--------------------eEEEE---EECC---eEEE
Confidence 468888875 4899999999999999999877776542111 11 11 1122 2577
Q ss_pred EeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 108 LYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 108 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
|.|..- +| ++.|.|.++.+.++.+.+.|..
T Consensus 187 i~R~g~-------tg-----------e~G~el~~~~~~a~~l~~~L~~ 216 (365)
T 1yx2_A 187 ISRTGY-------TG-----------EDGYEIYCRSDDAMHIWKKIID 216 (365)
T ss_dssp EESCCS-------SS-----------SSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEeCcc-------cC-----------CCEEEEEEcHHHHHHHHHHHHh
Confidence 887631 22 6899999999999988888754
No 24
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=55.70 E-value=8.4 Score=39.23 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=40.7
Q ss_pred CCceEEEEECCChhhHhhhhhhccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEEeCCC
Q 042318 38 KSRSVVRFSGPDTIKYLQGLLTNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFLYAPP 112 (407)
Q Consensus 38 s~~~~i~V~G~Da~~fLq~l~T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v~~~~ 112 (407)
+..++|+|+|++|...++.++.. .++. .++...|+.+.+ +|.+++.+.|+.+.
T Consensus 46 ~~i~iiRiSG~~a~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~-~~~~iDe~~v~~~~ 98 (482)
T 1xzp_A 46 GAIAILRLSGPDSWKIVQKHLRT--RSKI-------------------VPRKAIHGWIHE-NGEDVDEVVVVFYK 98 (482)
T ss_dssp CSCEEEEEESSSHHHHHHTTEEE--SSCC-------------------CBTBCEEEEECC-SSCCCCEEEEEEEC
T ss_pred ceEEEEEcccHHHHHHHHHHhcC--CCCC-------------------CCceEEEEEEec-CCeeeeEEEEEEEe
Confidence 45689999999999999999831 1111 124578999999 89999999988764
No 25
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=47.17 E-value=29 Score=37.38 Aligned_cols=80 Identities=8% Similarity=-0.001 Sum_probs=55.7
Q ss_pred CeeeecCC-ceEEEEECCChhhHhhhhhhccccC--CCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEEEE
Q 042318 32 PLASQLKS-RSVVRFSGPDTIKYLQGLLTNDVRK--FGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDLFL 108 (407)
Q Consensus 32 ~~~~dls~-~~~i~V~G~Da~~fLq~l~T~dv~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~~v 108 (407)
|-+.|+++ +..|.|.||.|.+.|+.++..|+.. +.... +.. .+-.| .+++|
T Consensus 593 v~i~d~s~~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~--------------------~~~---~~~~g---~~~~~ 646 (830)
T 1pj5_A 593 VQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFR--------------------AKN---VVIGG---IPVTA 646 (830)
T ss_dssp CEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTB--------------------EEE---EEETT---EEEEE
T ss_pred EEEEEccCCEEEEEEECcCHHHHHHHhcCcCCccccCCCce--------------------EEE---EEECC---EEEEE
Confidence 78888865 8999999999999999997666642 21100 111 11223 36888
Q ss_pred eCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 109 YAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
.|..- +| |+.|.|.++.+.++.+.+.|..
T Consensus 647 ~r~~~-------tg-----------e~g~ei~~~~~~~~~l~~~l~~ 675 (830)
T 1pj5_A 647 MRLSY-------VG-----------ELGWELYTSADNGQRLWDALWQ 675 (830)
T ss_dssp ECCCT-------TS-----------SSEEEEEEEHHHHHHHHHHHHH
T ss_pred EECcc-------cC-----------CCcEEEEecHHHHHHHHHHHHh
Confidence 88741 23 6889999998888888888754
No 26
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=42.24 E-value=35 Score=33.36 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=52.7
Q ss_pred CCeeeecCCceEEEEECCChhhHhhhhh----hccccCCCCCCCCcccccccCCCCCCCCCCccccccccCCCCcEEEEE
Q 042318 31 GPLASQLKSRSVVRFSGPDTIKYLQGLL----TNDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAALLTPQGKFLYDL 106 (407)
Q Consensus 31 ~~~~~dls~~~~i~V~G~Da~~fLq~l~----T~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~Ln~kGrv~~D~ 106 (407)
.|-+.|-..+.++.|.||.|.+.|+.++ ..|+..+. .++..-. | ++
T Consensus 145 ~V~i~ds~~~~~lalqGP~a~~~l~~l~~~~~~~~l~~~~------------------------~~~~~~~--g----~~ 194 (381)
T 1vlo_A 145 GIEITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMK------------------------PFFGVQA--G----DL 194 (381)
T ss_dssp TCEEEECTTEEEEEEESTTHHHHHHTTCCHHHHHHHTTCC------------------------SSBEEEE--T----TE
T ss_pred ceEEEECCCEEEEEEECccHHHHHHHhhccccCCCcccCC------------------------cceeEEe--c----cE
Confidence 5888883348999999999999999986 34554431 1111111 3 47
Q ss_pred EEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 107 FLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 107 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
+|.|..- +| |+.|.|.++.+.++.+.+.|..
T Consensus 195 ~i~R~gy-------tG-----------e~G~ei~~~~~~a~~l~~~L~~ 225 (381)
T 1vlo_A 195 FIATTGY-------TG-----------EAGYEIALPNEKAADFWRALVE 225 (381)
T ss_dssp EEECCCS-------SS-----------SCEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEecCC-------CC-----------CCEEEEEEeHHHHHHHHHHHHh
Confidence 7887631 22 6889999998888888877765
No 27
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=32.87 E-value=1.2e+02 Score=33.29 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=55.5
Q ss_pred CCCeeeecCC-ceEEEEECCChhhHhhhhhh-ccccCCCCCCCCcccccccCCCCCCCCCCccccccc-cCCCCcEEEEE
Q 042318 30 AGPLASQLKS-RSVVRFSGPDTIKYLQGLLT-NDVRKFGEPAGKREKTSTLTTPNLPYESASPVYAAL-LTPQGKFLYDL 106 (407)
Q Consensus 30 ~~~~~~dls~-~~~i~V~G~Da~~fLq~l~T-~dv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~yt~~-Ln~kGrv~~D~ 106 (407)
..|-+.|+++ +..|.|.||.|.+.|+.++. .|+..- .- | .+++. ..-.++ ..+
T Consensus 715 ~~V~i~d~s~~~~~lal~GP~a~~~l~~~~~~~dl~~~---~~-------------~------~~~~~~~~~~~g--~~~ 770 (965)
T 2gag_A 715 LDVTCTSVTEQLATVAVVGPRSRDVIAKLASTVDVSNE---GF-------------K------FMAFKDVVLDSG--IEA 770 (965)
T ss_dssp SCCEEEECTTTEEEEEEESTTHHHHHHHHCTTSCCSTT---TS-------------C------TTBEEEEECTTS--CEE
T ss_pred CcEEEEEccCCEEEEEEECcCHHHHHHHhhCCCCCccc---cC-------------C------CceeEEEEEcCC--CEE
Confidence 3588888865 89999999999999999972 355321 00 0 11111 111022 257
Q ss_pred EEeCCCCCCccccCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHh
Q 042318 107 FLYAPPPPEEKLDRTGWSGPSSGSHDRSVEVFADVDGSVLDELLHTFKK 155 (407)
Q Consensus 107 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~L~~ 155 (407)
+|.|.+- +| |..|.|.++.+.+..+.+.|..
T Consensus 771 ~~~R~~~-------tG-----------e~G~ei~~~~~~~~~l~~~L~~ 801 (965)
T 2gag_A 771 RISRISF-------SG-----------ELAFEIAVPAWHGLRVWEDVYA 801 (965)
T ss_dssp EEECCCS-------SS-----------SCEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEeCCc-------cC-----------CCEEEEEEeHHHHHHHHHHHHh
Confidence 8888641 23 6889999999999999888764
No 28
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=21.80 E-value=2.1e+02 Score=27.30 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=29.0
Q ss_pred CCCCeeeecC-CceEEEEECCChhhHhhhhhhcccc
Q 042318 29 NAGPLASQLK-SRSVVRFSGPDTIKYLQGLLTNDVR 63 (407)
Q Consensus 29 ~~~~~~~dls-~~~~i~V~G~Da~~fLq~l~T~dv~ 63 (407)
+..|-+.|++ ++..+.|.||.|.+.|+.++..|+.
T Consensus 123 ~~~V~i~d~s~~~~~lalqGP~a~~~l~~l~~~~l~ 158 (355)
T 3ttg_A 123 RTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFS 158 (355)
T ss_dssp TCCCEEEECGGGEEEEEEESTTHHHHHHHHSSSCCC
T ss_pred CCCeEEEECcCCEEEEEEECCcHHHHHHHhccCCCc
Confidence 5678888886 5799999999999999998655554
Done!