Query 042319
Match_columns 393
No_of_seqs 355 out of 1897
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:23:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 1.7E-21 5.8E-26 149.9 6.3 61 71-139 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 3.2E-19 1.1E-23 137.1 5.8 60 173-233 2-62 (63)
3 1u3e_M HNH homing endonuclease 94.5 0.0034 1.2E-07 56.0 -1.8 88 119-215 55-146 (174)
4 3igm_B PF14_0633 protein; AP2 92.9 0.074 2.5E-06 41.8 3.3 25 67-91 3-27 (77)
5 3igm_B PF14_0633 protein; AP2 87.5 0.38 1.3E-05 37.8 3.1 28 169-198 3-30 (77)
6 1u3e_M HNH homing endonuclease 49.0 3.2 0.00011 36.4 -0.3 37 72-120 109-145 (174)
7 2z8u_A Tata-box-binding protei 46.2 71 0.0024 28.7 8.2 136 68-221 43-182 (188)
8 1ais_A TBP, protein (tata-bind 40.7 81 0.0028 28.1 7.6 136 68-221 39-178 (182)
9 3eik_A Tata-box-binding protei 33.4 92 0.0032 28.8 6.9 136 69-221 74-212 (218)
10 1z1b_A Integrase; protein-DNA 31.4 50 0.0017 30.5 4.9 42 175-221 14-55 (356)
11 1z1b_A Integrase; protein-DNA 29.2 67 0.0023 29.6 5.4 41 74-127 15-55 (356)
12 1mp9_A Tata-binding protein; t 28.1 1.5E+02 0.005 26.8 7.2 137 68-222 43-183 (198)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.84 E-value=1.7e-21 Score=149.86 Aligned_cols=61 Identities=39% Similarity=0.832 Sum_probs=56.9
Q ss_pred CeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhcCCccccCCCCC
Q 042319 71 RFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFPIS 139 (393)
Q Consensus 71 ~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~G~~a~~NFp~~ 139 (393)
+|+||++++| |||+|+|+++ ..+|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~-gkw~A~I~~~-------~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETT-TEEEEEEEET-------TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCC-CcEEEEEccc-------cCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999997 9999999987 24589999999999999999999999999999999999974
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.77 E-value=3.2e-19 Score=137.13 Aligned_cols=60 Identities=42% Similarity=0.630 Sum_probs=54.7
Q ss_pred ccccceecccCCeeEEeecccc-CCeEEecCCCCcHHHHHHHHHHHHHHhcCCCcccCCCCc
Q 042319 173 KYRGVARHHHNGRWEARIGRVF-GNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLS 233 (393)
Q Consensus 173 ~yrGV~~~~~~grW~A~I~~~~-~~k~i~LG~f~t~EEAA~AYD~Aa~~l~G~~a~~NF~~~ 233 (393)
+|+||+++ .+|||+|+|+.+. +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r-~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeC-CCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 59999875 6899999998654 479999999999999999999999999999999999975
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=94.51 E-value=0.0034 Score=55.97 Aligned_cols=88 Identities=8% Similarity=-0.020 Sum_probs=59.5
Q ss_pred HHHHHHHhhcCCcc---ccCC-CCCchhHHHHHhhhhhHHHHHHhhhccCCCCcccccccccceecccCCeeEEeecccc
Q 042319 119 AYDLAALKYWGTST---FTNF-PISDYEKEIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVF 194 (393)
Q Consensus 119 AYD~Aa~~~~G~~a---~~NF-p~~~yd~Ei~~Lr~vS~eE~v~~LRrkssg~sr~~S~yrGV~~~~~~grW~A~I~~~~ 194 (393)
++...|..|.|... ..++ .....++.+.+|+.+|..++......... . ..++||.+ +..++|.+.|. .
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~---~--~~~~g~~~-~~~~k~~~vi~--~ 126 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT---L--NVSKAQQI-AKIKNQKPIIV--I 126 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC---C--CCHHHHHH-HHHHTCCCEEE--E
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc---c--cceeeeee-ccCCCCceEEE--E
Confidence 45555666766531 1222 24456678899999999999876554421 1 12578866 55678988884 4
Q ss_pred CCeEEecCCCCcHHHHHHHHH
Q 042319 195 GNKYLYLGTYSTQEEAARAYD 215 (393)
Q Consensus 195 ~~k~i~LG~f~t~EEAA~AYD 215 (393)
+ +.++||.|.|.+|||++|.
T Consensus 127 ~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 127 S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp C-TTSCEEEESCHHHHHHHHT
T ss_pred c-CCceEEeeCCHHHHHHHHC
Confidence 4 5567999999999999964
No 4
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=92.85 E-value=0.074 Score=41.84 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.3
Q ss_pred CCCCCeeeeeEeCCCCeeEEEEecc
Q 042319 67 KRSSRFRGVSRHRWTGRYEAHLWDK 91 (393)
Q Consensus 67 ~~sS~yrGV~~~~~~grw~A~I~~~ 91 (393)
..+|+|.||+|+++.+.|.|.-.+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 3579999999999999999987654
No 5
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=87.47 E-value=0.38 Score=37.81 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=22.2
Q ss_pred ccccccccceecccCCeeEEeeccccCCeE
Q 042319 169 RGVSKYRGVARHHHNGRWEARIGRVFGNKY 198 (393)
Q Consensus 169 r~~S~yrGV~~~~~~grW~A~I~~~~~~k~ 198 (393)
...|+|.||+|++..+.|.|.-. .++++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~--e~g~r 30 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFY--DGASR 30 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEE--ETTEE
T ss_pred CCCCCCCcEEeecCCceEEEEEe--cCCeE
Confidence 34699999999999999999983 44544
No 6
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=49.03 E-value=3.2 Score=36.43 Aligned_cols=37 Identities=5% Similarity=-0.073 Sum_probs=26.7
Q ss_pred eeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHH
Q 042319 72 FRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAY 120 (393)
Q Consensus 72 yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AY 120 (393)
++||.+ ...++|.+.|. ++ +..+||.|+|.+|||++|
T Consensus 109 ~~g~~~-~~~~k~~~vi~----------~~-~~~~~~~f~s~~eAa~~~ 145 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIV----------IS-PDGIEKEYPSTKCACEEL 145 (174)
T ss_dssp HHHHHH-HHHHTCCCEEE----------EC-TTSCEEEESCHHHHHHHH
T ss_pred eeeeee-ccCCCCceEEE----------Ec-CCceEEeeCCHHHHHHHH
Confidence 467776 33466777763 34 456789999999999986
No 7
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=46.18 E-value=71 Score=28.70 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=75.4
Q ss_pred CCCCeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhcCCc-cccCCCCCchhHHH-
Q 042319 68 RSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTS-TFTNFPISDYEKEI- 145 (393)
Q Consensus 68 ~sS~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~G~~-a~~NFp~~~yd~Ei- 145 (393)
+..+|-||..+-..-+-.+-||.. ||-+--|+. ++++|..|-.+.+..+.... ....|+.-...|-.
T Consensus 43 ~P~~fpgli~Rl~~Pk~t~lIF~S----------GKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVa 111 (188)
T 2z8u_A 43 EPEQFPGLVCRLSVPKVALLIFRS----------GKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVA 111 (188)
T ss_dssp ------CEEEEETTTTEEEEECTT----------SEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEE
T ss_pred CCCCcccEEEEcCCCcEEEEEeCC----------CeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEE
Confidence 446889998888777888888764 898888875 56778888777665553211 00111111101100
Q ss_pred --HHhhhhhHHHHHHhhhccCCCCcccccccccceecccCCeeEEeeccccCCeEEecCCCCcHHHHHHHHHHHHHHh
Q 042319 146 --EFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEY 221 (393)
Q Consensus 146 --~~Lr~vS~eE~v~~LRrkssg~sr~~S~yrGV~~~~~~grW~A~I~~~~~~k~i~LG~f~t~EEAA~AYD~Aa~~l 221 (393)
..-..+..+.+...++. ..=....|-||.+.-..-+-.+-| ...||-+-.|. .+++|+..|.+.....+
T Consensus 112 s~~l~~~i~L~~la~~~~~----~eYePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 112 TADLGIEPNLDDIALMVEG----TEYEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp EEECSSCCCHHHHHHHSTT----EEECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred EEecCCccCHHHHHhhCcC----cEECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 00001122222222211 112245688987665666777787 67888887776 57789999988865554
No 8
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=40.67 E-value=81 Score=28.10 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=79.8
Q ss_pred CCCCeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhc--CCc--cccCCCCCchhH
Q 042319 68 RSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYW--GTS--TFTNFPISDYEK 143 (393)
Q Consensus 68 ~sS~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~--G~~--a~~NFp~~~yd~ 143 (393)
+..+|-||..+-..-+-.+-||.. ||-+--|+ .++++|..|....+..+. |-. -..+|-......
T Consensus 39 ~P~~fpgli~Rl~~P~~t~lIF~S----------GKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVa 107 (182)
T 1ais_A 39 NPEEFPGIICHLDDPKVALLIFSS----------GKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVF 107 (182)
T ss_dssp CTTTCSSEEEECSSSCCEEEECTT----------SEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEE
T ss_pred CCCccccEEEEcCCCcEEEEEeCC----------CeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEE
Confidence 346889999888777888888764 88777775 677888888888776663 211 011111110000
Q ss_pred HHHHhhhhhHHHHHHhhhccCCCCcccccccccceecccCCeeEEeeccccCCeEEecCCCCcHHHHHHHHHHHHHHh
Q 042319 144 EIEFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEY 221 (393)
Q Consensus 144 Ei~~Lr~vS~eE~v~~LRrkssg~sr~~S~yrGV~~~~~~grW~A~I~~~~~~k~i~LG~f~t~EEAA~AYD~Aa~~l 221 (393)
-...-..+..+.....++. ..=....|-||.+.-..-+-.+-| ...||-+-.|. .+++|+..|.+.....+
T Consensus 108 s~~l~~~i~L~~la~~~~~----~~YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 108 SGDIGREFNLDVVALTLPN----CEYEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLREL 178 (182)
T ss_dssp EEECSSCCCHHHHHHHSTT----EECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred EEEcCCccCHHHHHhhCCC----CEECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 0000001122222222211 112345688987665666777888 57788877775 57789999988866555
No 9
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=33.43 E-value=92 Score=28.76 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=81.6
Q ss_pred CCCeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhcCCccccCCC---CCchhHHH
Q 042319 69 SSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTSTFTNFP---ISDYEKEI 145 (393)
Q Consensus 69 sS~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~G~~a~~NFp---~~~yd~Ei 145 (393)
..+|-||..+-..-+-.+-||.. ||-+..|. .++++|..|.++.+..+....-...|+ ......-.
T Consensus 74 Pe~Fpglv~Rl~~Pk~t~LIF~S----------GKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~ 142 (218)
T 3eik_A 74 PKRFAAVIMRIREPKTTALIFAS----------GKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSC 142 (218)
T ss_dssp TTTCSSEEEEETTTTEEEEECTT----------SEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEE
T ss_pred CccCceEEEEecCCcEEEEEECC----------CeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEE
Confidence 35788998888778888999764 89988887 568899999988887774221111121 00000000
Q ss_pred HHhhhhhHHHHHHhhhccCCCCcccccccccceecccCCeeEEeeccccCCeEEecCCCCcHHHHHHHHHHHHHHh
Q 042319 146 EFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEY 221 (393)
Q Consensus 146 ~~Lr~vS~eE~v~~LRrkssg~sr~~S~yrGV~~~~~~grW~A~I~~~~~~k~i~LG~f~t~EEAA~AYD~Aa~~l 221 (393)
..-..+..+.+....... ..=....|-||.+.-..-+=...| ...||-+-.|. .+++|+..|++..--.|
T Consensus 143 dl~f~I~Le~la~~~~~~---~~YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 143 DIKFSIRLEGLAYAHSNY---CSYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp ECSSCBCHHHHHHHSTTT---EECCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred ECCCcCcHHHHHHhccCC---cEECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 000011222222211111 111235688887666666777788 67888887776 78899999998755444
No 10
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=31.45 E-value=50 Score=30.52 Aligned_cols=42 Identities=24% Similarity=0.101 Sum_probs=30.2
Q ss_pred ccceecccCCeeEEeeccccCCeEEecCCCCcHHHHHHHHHHHHHHh
Q 042319 175 RGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEY 221 (393)
Q Consensus 175 rGV~~~~~~grW~A~I~~~~~~k~i~LG~f~t~EEAA~AYD~Aa~~l 221 (393)
.||.. +..|.|..++ ..+||++.+|. |..||-.+...+...+
T Consensus 14 ~~v~~-~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYI-RNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEE-ETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cccee-cCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 46643 5678999887 35788899996 8888877766655444
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=29.24 E-value=67 Score=29.61 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=28.2
Q ss_pred eeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhh
Q 042319 74 GVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKY 127 (393)
Q Consensus 74 GV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~ 127 (393)
||++++. |.|.... ...||++.+|. |..+|..+...+...+
T Consensus 15 ~v~~~~~-g~~~~r~----------~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNN-GYYCYRD----------PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETT-TEEEEEC----------TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCC-CeEEEEe----------ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777664 8888765 23688999996 8888876665554443
No 12
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=28.06 E-value=1.5e+02 Score=26.81 Aligned_cols=137 Identities=14% Similarity=0.115 Sum_probs=81.0
Q ss_pred CCCCeeeeeEeCCCCeeEEEEecccccchhhccCCeEEEccCCCCHHHHHHHHHHHHHhhcCCcc-ccCCCCCchhHHH-
Q 042319 68 RSSRFRGVSRHRWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEEAAARAYDLAALKYWGTST-FTNFPISDYEKEI- 145 (393)
Q Consensus 68 ~sS~yrGV~~~~~~grw~A~I~~~~~w~~~~~~~gk~~~LG~F~teEeAA~AYD~Aa~~~~G~~a-~~NFp~~~yd~Ei- 145 (393)
+..+|-||..+-..-+-.+-||.. ||-+--|+. ++++|..|....+..+....- ...|+.-...|-.
T Consensus 43 ~P~~fpgli~Rl~~Pk~t~lIF~S----------GKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVa 111 (198)
T 1mp9_A 43 DPDQFPGLIFRLESPKITSLIFKS----------GKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVA 111 (198)
T ss_dssp CTTTCSSEEEEETTTTEEEEECTT----------SEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEE
T ss_pred CCccccceEEEcCCCceEEEEeCC----------CeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEE
Confidence 345789999888777888888764 898888875 556888888777665532110 0111100000000
Q ss_pred --HHhhhhhHHHHHHhhhccCCCCcccccccccceecccCCeeEEeeccccCCeEEecCCCCcHHHHHHHHHHHHHHhc
Q 042319 146 --EFMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYR 222 (393)
Q Consensus 146 --~~Lr~vS~eE~v~~LRrkssg~sr~~S~yrGV~~~~~~grW~A~I~~~~~~k~i~LG~f~t~EEAA~AYD~Aa~~l~ 222 (393)
..-..+..+.....++ ...=....|-||.+.-..-|-.+-| ...||-+-.|. .+++++..|.+.....+.
T Consensus 112 s~~l~~~i~L~~la~~~~----~~~YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L~ 183 (198)
T 1mp9_A 112 SANLHVIVNLDKAAFLLE----NNMYEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKLV 183 (198)
T ss_dssp EEECSSEECHHHHHHHSS----SEECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred EeeCCCccCHHHHHhhcC----CcEECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 0000112222222221 1112345688987666666778888 67888887776 567899999988666663
Done!