BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042321
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILGS----PRWPA-SKFSLTYAF 80
+L+ +K Q + L T LD T+ MR + + PR P K +TY
Sbjct: 40 VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRI 99
Query: 81 L-------PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
+ P T DA ARAFQ W+ T +F+ D ADI I+F +HG G
Sbjct: 100 IGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEHGDG 152
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILGS----PRWPA-SKFSLTYAF 80
+L+ +K Q + L T LD T+ MR + + PR P K +TY
Sbjct: 38 VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRI 97
Query: 81 L-------PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
+ P T DA ARAFQ W+ T +F+ D ADI I+F +HG G
Sbjct: 98 IGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEHGDG 150
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 31 IKNYQLNYHLKSTEVLDAGTVGKMR-----THDAELQIL--GSPRWPASKFSLTYAF--- 80
+K Q + LK T DA T+ M+ D +L G+PRW + LTY
Sbjct: 45 LKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQFVLTEGNPRWEQT--HLTYRIENY 102
Query: 81 ---LPGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDH 127
LP R D + + +AFQ W+ T F + + ADI ISF GDH
Sbjct: 103 TPDLP--RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH 149
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 65 GSPRWPASKFSLTYAF------LPGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADI 118
G+PRW + LTY LP R D + + +AFQ W+ T F + + + ADI
Sbjct: 6 GNPRW--EQTHLTYRIENYTPDLP--RADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADI 60
Query: 119 KISFESGDH 127
ISF GDH
Sbjct: 61 MISFVRGDH 69
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 65 GSPRWPASKFSLTYAF------LPGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADI 118
G+PRW + LTY LP R D + + +AFQ W+ T F + + + ADI
Sbjct: 5 GNPRW--EQTHLTYRIENYTPDLP--RADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADI 59
Query: 119 KISFESGDH 127
ISF GDH
Sbjct: 60 MISFVRGDH 68
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 65 GSPRWPASKFSLTYAF------LPGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADI 118
G+PRW + LTY LP R D + + +AFQ W+ T F + + ADI
Sbjct: 6 GNPRWEQTH--LTYRIENYTPDLP--RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADI 60
Query: 119 KISFESGDH 127
ISF GDH
Sbjct: 61 MISFVRGDH 69
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 90 NPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
N + AF W+ + F + + ADIKI +E G+HG G
Sbjct: 31 NAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDG 71
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 90 NPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
N + AF W+ + F + + ADIKI +E G+HG G
Sbjct: 31 NAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDG 71
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 65 GSPRWPASKFSLTYA-FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISF 122
G+PRW + + P R D + + +AFQ W+ T F + + + ADI ISF
Sbjct: 5 GNPRWEQTHLRYRIENYTPDLPRADVDHAIEKAFQLWSDVTPLTFTKVSEGQ-ADIMISF 63
Query: 123 ESGDH 127
GDH
Sbjct: 64 VRGDH 68
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 65 GSPRWPASKFSLTYA-FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISF 122
G+PRW + + P R D + + +AFQ W+ T F + + + ADI ISF
Sbjct: 4 GNPRWEQTHLRYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISF 62
Query: 123 ESGDH 127
GDH
Sbjct: 63 VRGDH 67
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 65 GSPRWPASKFSLTYA-FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISF 122
G+PRW + + P R D + + +AFQ W+ T F + + + ADI ISF
Sbjct: 4 GNPRWEQTHLRYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISF 62
Query: 123 ESGDH 127
GDH
Sbjct: 63 VRGDH 67
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 66 SPRWPASKFSLTYAF------LPGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIK 119
+PRW + LTY LP R D + + +AFQ W+ T F + + + ADI
Sbjct: 1 NPRW--EQTHLTYRIENYTPDLP--RADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIM 55
Query: 120 ISFESGDH 127
ISF GDH
Sbjct: 56 ISFVRGDH 63
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 67 PRWPASKFSLTYAFL-------PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIK 119
P+W K +TY + P T DA ARAFQ W+ T +F+ D ADI
Sbjct: 9 PKW--DKNQITYRIIGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIM 62
Query: 120 ISFESGDHGAG 130
I+F +HG G
Sbjct: 63 INFGRWEHGDG 73
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 65 GSPRWPASKFSLTYA---FLPG-TRGDAINPVARAFQTWA---PNTQFQFAESQDYRNAD 117
G+PRW + LTY + P +R D + +AFQ W+ P T + +E Q AD
Sbjct: 6 GNPRWENTH--LTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSEGQ----AD 59
Query: 118 IKISFESGDH 127
I ISF GDH
Sbjct: 60 IMISFVRGDH 69
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 67 PRWPASKFSLTYAFL-------PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIK 119
P+W K +TY + P T DA ARAFQ W+ T +F+ D ADI
Sbjct: 3 PKW--DKNQITYRIIGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIM 56
Query: 120 ISFESGDHGAG 130
I+F +HG G
Sbjct: 57 INFGRWEHGDG 67
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 67 PRWPASKFSLTYAFL-------PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIK 119
P+W K +TY + P T DA ARAFQ W+ T +F+ D ADI
Sbjct: 8 PKW--DKNQITYRIIGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIM 61
Query: 120 ISFESGDHGAG 130
I+F +HG G
Sbjct: 62 INFGRWEHGDG 72
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 65 GSPRWPASKFSLTY---AFLPGTRGDAIN-PVARAFQTWAPNTQFQFAESQDYRNADIKI 120
G P+W K +LTY + P ++ V A Q W+ F ADI I
Sbjct: 1 GEPKW--KKNTLTYRISKYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINS-GEADIMI 57
Query: 121 SFESGDHG 128
SFE+GDHG
Sbjct: 58 SFENGDHG 65
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDH 127
R D + + +AFQ W+ T F + + + ADI ISF GDH
Sbjct: 20 RADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISFVRGDH 61
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 93 ARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
ARAF W+ T F R+ADI I F +HG G
Sbjct: 37 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDG 73
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 93 ARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
ARAF W+ T F R+ADI I F +HG G
Sbjct: 37 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDG 73
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 93 ARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
ARAF W+ T F R+ADI I F +HG G
Sbjct: 33 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDG 69
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 63 ILGSPRWPASKFSLTYAFL--PG--TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADI 118
+L RW K LTY L P R VA A Q W+ T F E + R ADI
Sbjct: 3 VLSGGRW--EKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGR-ADI 59
Query: 119 KISFESGDHG 128
I F HG
Sbjct: 60 MIDFARYWHG 69
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 93 ARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
ARAF W+ T F R+ADI I F +HG G
Sbjct: 123 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDG 159
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 62 QILGSPRWPASKFSLTYA---FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNAD 117
++ G P W K +TY + P R D + +AFQ W+ T +F++ AD
Sbjct: 4 EMPGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMAD 60
Query: 118 IKISFESGDHG 128
I + F G HG
Sbjct: 61 ILVVFARGAHG 71
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 62 QILGSPRWPASKFSLTYA---FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNAD 117
++ G P W K +TY + P R D + +AFQ W+ T +F++ AD
Sbjct: 3 EMPGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMAD 59
Query: 118 IKISFESGDHG 128
I + F G HG
Sbjct: 60 ILVVFARGAHG 70
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 62 QILGSPRWPASKFSLTYA---FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNAD 117
++ G P W K +TY + P R D + +AFQ W+ T +F++ AD
Sbjct: 3 EMPGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMAD 59
Query: 118 IKISFESGDHG 128
I + F G HG
Sbjct: 60 ILVVFARGAHG 70
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 62 QILGSPRWPASKFSLTYA---FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNAD 117
++ G P W K +TY + P R D + +AFQ W+ T +F++ AD
Sbjct: 4 EMPGGPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMAD 60
Query: 118 IKISFESGDHG 128
I + F G HG
Sbjct: 61 ILVVFARGAHG 71
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ + ADI + F G HG
Sbjct: 17 REDVDYAIRKAFQVWSNVTPLKFSK-INTGMADILVVFARGAHG 59
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ + ADI + F G HG
Sbjct: 16 REDVDYAIRKAFQVWSNVTPLKFSK-INTGMADILVVFARGAHG 58
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ + ADI + F G HG
Sbjct: 23 REDVDYAIRKAFQVWSNVTPLKFSK-INTGMADILVVFARGAHG 65
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ ADI + F G HG
Sbjct: 23 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHG 65
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ ADI + F G HG
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHG 64
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ ADI + F G HG
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHG 64
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ + ADI + F G HG
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSK-INTGMADILVVFARGAHG 64
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ + ADI + F G HG
Sbjct: 24 REDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHG 66
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ + ADI + F G HG
Sbjct: 23 REDVDYAIRKAFQVWSNVTPLKFSK-INTGMADILVVFARGAHG 65
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ + ADI + F G HG
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHG 64
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 85 RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
R D + +AFQ W+ T +F++ ADI + F G HG
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHG 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,171,714
Number of Sequences: 62578
Number of extensions: 197889
Number of successful extensions: 489
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 44
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)