BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042321
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29136|MEP1_SOYBN Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
Length = 305
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 20 DDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQ--ILGS----------- 66
DD+FD+ L SAIK YQ NY+L T D T+ ++ T + I+ +
Sbjct: 74 DDNFDDTLVSAIKTYQKNYNLNVTGKFDINTLKQIMTPRCGVPDIIINTNKTTSFGMISD 133
Query: 67 -------PRWPASKFSLTYAFLPGTRGDAI--NPVARAFQTWAPNTQFQFAESQDYRNAD 117
PRW A LTYAF P R D + +ARAF W P F E+ Y A+
Sbjct: 134 YTFFKDMPRWQAGTTQLTYAFSPEPRLDDTFKSAIARAFSKWTPVVNIAFQETTSYETAN 193
Query: 118 IKISFESGDHG 128
IKI F S +HG
Sbjct: 194 IKILFASKNHG 204
>sp|P91953|HE_HEMPU 50 kDa hatching enzyme OS=Hemicentrotus pulcherrimus PE=1 SV=1
Length = 591
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 21/139 (15%)
Query: 3 KFGYLNYDNSNNQTHANDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQ 62
+FGY+ ++ + + N SAI YQ N + T +LDA T + T +
Sbjct: 113 QFGYVPLGSTFGEANIN-------YTSAILEYQQNGGINQTGILDAETAALLDTPRCGVP 165
Query: 63 -----ILGSPRWPASKFSLTYAFLPGTRGDAI------NPVARAFQTWAPNTQFQFAESQ 111
+ G WP ++TY+F GT + + N + RAFQ W + F E
Sbjct: 166 DILPYVTGGIAWP-RNVAVTYSF--GTLSNDLSQTAIKNELRRAFQVWDDVSSLTFREVV 222
Query: 112 DYRNADIKISFESGDHGAG 130
D + DI+I F S +HG G
Sbjct: 223 DSSSVDIRIKFGSYEHGDG 241
>sp|P22757|HE_PARLI Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1
Length = 587
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 3 KFGYLNYDNSNNQTHANDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQ 62
KFGY ++ + + N SAI ++Q + + T +LDA T + T +
Sbjct: 110 KFGYTPPGSTFGEANLN-------YTSAILDFQEHGGINQTGILDADTAELLSTPRCGVP 162
Query: 63 -----ILGSPRWPASKFSLTYAFLPGT----RGDAINPVARAFQTWAPNTQFQFAESQDY 113
+ S W ++ +TY+F T + D + + RAF+ W + F E D
Sbjct: 163 DVLPFVTSSITWSRNQ-PVTYSFGALTSDLNQNDVKDEIRRAFRVWDDVSGLSFREVPDT 221
Query: 114 RNADIKISFESGDHGAG 130
+ DI+I F S DHG G
Sbjct: 222 TSVDIRIKFGSYDHGDG 238
>sp|Q9EPL6|MMP1B_MOUSE Interstitial collagenase B OS=Mus musculus GN=Mmp1b PE=2 SV=1
Length = 463
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 8 NYDNSNNQTHANDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILG-- 65
NY N A + + E++ ++ Q + LK T D T+ M+ + +
Sbjct: 38 NYYNLGKNMQAKNVNGKEVMAEKLRQMQQLFGLKVTGNSDPETLRAMKKPRCGVPDVAPY 97
Query: 66 -----SPRWPASKFSLTYAFLPGT----RGDAINPVARAFQTWAPNTQFQFAESQDYRNA 116
+PRW +K LTY+ L T + + +ARAF+ W+ T F +
Sbjct: 98 AITHNNPRW--TKTHLTYSILNYTPYLSKAVVEDAIARAFRVWSDVTPLTFQRVFE-EEG 154
Query: 117 DIKISFESGDHG 128
DI +SF GDHG
Sbjct: 155 DIVLSFHRGDHG 166
>sp|O70138|MMP8_MOUSE Neutrophil collagenase OS=Mus musculus GN=Mmp8 PE=2 SV=2
Length = 465
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAE-------LQILGSPRWPASKFSLTY 78
++ +K Q + L T LDA T+G M L GSP+W + +LTY
Sbjct: 58 MVAEKLKEMQRFFSLAETGKLDAATMGIMEMPRCGVPDSGDFLLTPGSPKW--THTNLTY 115
Query: 79 AFLPGT----RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
+ T R + + +AF W+ + F E ADI I+F S DHG
Sbjct: 116 RIINHTPQLSRAEVKTAIEKAFHVWSVASPLTFTEILQ-GEADINIAFVSRDHG 168
>sp|Q9EPL5|MMP1A_MOUSE Interstitial collagenase A OS=Mus musculus GN=Mmp1a PE=2 SV=1
Length = 464
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 8 NYDNSNNQTHANDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILG-- 65
NY N A + + E++ ++ Q + LK T D T+ M+ + +
Sbjct: 38 NYYNLGKNMQAKNVNGKEMMAEKLRQMQQLFGLKVTGNSDPETLRAMKKPRCGVPDVAPY 97
Query: 66 -----SPRWPASKFSLTYAFLPGT----RGDAINPVARAFQTWAPNTQFQFAESQDYRNA 116
+PRW +K LTY+ L T + + +ARAF+ W+ T F +
Sbjct: 98 AITHNNPRW--TKTHLTYSILNYTPYLPKAVVEDAIARAFRVWSDVTPLTFQRVFE-EEG 154
Query: 117 DIKISFESGDHG 128
DI +SF GDHG
Sbjct: 155 DIVLSFHRGDHG 166
>sp|P13943|MMP1_RABIT Interstitial collagenase OS=Oryctolagus cuniculus GN=MMP1 PE=2 SV=1
Length = 468
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMR-----THDAELQIL--GSPRWPASKFSLTY 78
L +K Q + LK T DA T+ M+ D +L G+PRW + LTY
Sbjct: 58 LAVEKLKQMQEFFGLKVTGKPDAETLKMMKQPRCGVPDVAQFVLTPGNPRWEQT--HLTY 115
Query: 79 A---FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDH 127
+ P +R D N + +AFQ W+ T F + ADI ISF GDH
Sbjct: 116 RIENYTPDLSRADVDNAIEKAFQLWSNVTPLTFTKVSK-GQADIMISFVRGDH 167
>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN=MMP2 PE=2 SV=1
Length = 661
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILGS----PRWPA-SKFSLTYAF 80
+L+ +K Q + L T LD T+ MR + + PR P K +TY
Sbjct: 70 VLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRI 129
Query: 81 L-------PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
+ P T DA ARAFQ W+ T +F+ D ADI I+F +HG G
Sbjct: 130 IGYTPDLDPQTVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEHGDG 182
>sp|Q9GKE1|MMP27_TUPBE Matrix metalloproteinase-27 OS=Tupaia belangeri GN=MMP27 PE=2 SV=1
Length = 512
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILGS-----PRWPASKFSLTYAF 80
LL+ I+ Q + L T LD+ T+ M+T + +G P W K++LTY
Sbjct: 58 LLDGKIREMQAFFGLTVTGTLDSNTLEIMKTPRCGVPDVGQYGYTLPGW--RKYNLTYRI 115
Query: 81 LPGT----RGDAINPVARAFQTWAPNTQFQFAESQDYRN-ADIKISFESGDHG 128
+ T R D + +A + W+ T F ++ ++ ADI I+F + HG
Sbjct: 116 MNYTPDMARADVDEAIQKALEVWSKVTPLTF--TKIFKGIADIMIAFRTRVHG 166
>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens GN=MMP2 PE=1 SV=2
Length = 660
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILGS----PRWPA-SKFSLTYAF 80
+L+ +K Q + L T LD T+ MR + + PR P K +TY
Sbjct: 69 VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRI 128
Query: 81 L-------PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
+ P T DA ARAFQ W+ T +F+ D ADI I+F +HG G
Sbjct: 129 IGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEHGDG 181
>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus cuniculus GN=MMP2 PE=2
SV=1
Length = 662
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILGS----PRWPA-SKFSLTYAF 80
+L+ +K Q + L T LD T+ MR + + PR P K +TY
Sbjct: 69 VLKDTLKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRI 128
Query: 81 L-------PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
+ P T DA ARAFQ W+ T +F+ D ADI I+F +HG G
Sbjct: 129 IGYTPDLDPETVDDAF---ARAFQVWSNVTPLRFSRIHD-GEADIMINFGRWEHGDG 181
>sp|P03956|MMP1_HUMAN Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3
Length = 469
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 31 IKNYQLNYHLKSTEVLDAGTVGKMR-----THDAELQIL--GSPRWPASKFSLTYAF--- 80
+K Q + LK T DA T+ M+ D +L G+PRW + LTY
Sbjct: 64 LKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQFVLTEGNPRWEQT--HLTYRIENY 121
Query: 81 ---LPGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDH 127
LP R D + + +AFQ W+ T F + + ADI ISF GDH
Sbjct: 122 TPDLP--RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH 168
>sp|Q6Y4Q5|MMP3_CANFA Stromelysin-1 OS=Canis familiaris GN=MMP3 PE=2 SV=1
Length = 478
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 31 IKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILGS-------PRWPASKFSLTYAFL-- 81
I+ Q L+ T +D+ T+ MR + +G P+W K LTY +
Sbjct: 64 IREMQKFLGLEVTGKVDSDTLAMMRRPRCGVPDVGDFTTFPGMPKW--RKTHLTYRIMNY 121
Query: 82 -PGTRGDAIN-PVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
P DA++ + +A W T F+ + D ADIKISF DHG
Sbjct: 122 TPDLPRDAVDSAIEKALNVWKEVTPLTFSRT-DEGEADIKISFAVRDHG 169
>sp|P21692|MMP1_PIG Interstitial collagenase OS=Sus scrofa GN=MMP1 PE=1 SV=2
Length = 469
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMR-----THDAELQIL--GSPRWPASKFSLTY 78
L+ +K Q + LK T DA T+ M+ D +L G+PRW + LTY
Sbjct: 59 LVVEKLKQMQQFFGLKVTGKPDAETLNVMKQPRCGVPDVAEFVLTPGNPRWENTH--LTY 116
Query: 79 A---FLPG-TRGDAINPVARAFQTWA---PNTQFQFAESQDYRNADIKISFESGDH 127
+ P +R D + +AFQ W+ P T + +E Q ADI ISF GDH
Sbjct: 117 RIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSEGQ----ADIMISFVRGDH 168
>sp|O88766|MMP8_RAT Neutrophil collagenase OS=Rattus norvegicus GN=Mmp8 PE=2 SV=1
Length = 466
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAE-------LQILGSPRWPASKFSLTY 78
++ +K Q + L T DA T+ M L GSP+W + +LTY
Sbjct: 59 MIAEKLKEMQRFFGLPETGKPDAATIEIMEKPRCGVPDSGDFLLTPGSPKW--THTNLTY 116
Query: 79 AFLPGT----RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
+ T + + + +AF+ W+ + F E+ + ADI I+F S DHG
Sbjct: 117 RIINHTPQMSKAEVKTEIEKAFKIWSVPSTLTFTETLE-GEADINIAFVSRDHG 169
>sp|Q9XSZ5|MMP1_HORSE Interstitial collagenase OS=Equus caballus GN=MMP1 PE=2 SV=1
Length = 469
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 31 IKNYQLNYHLKSTEVLDAGTVGKMR-----THDAELQIL--GSPRWPASKFSLTYA---F 80
+K Q + LK T DA T+ M+ D +L G+PRW + LTY +
Sbjct: 64 LKQMQEFFGLKVTGKPDAETLNVMKQPRCGVPDVAEFVLTEGNPRWENT--HLTYRIENY 121
Query: 81 LPG-TRGDAINPVARAFQTWA---PNTQFQFAESQDYRNADIKISFESGDH 127
P R D + +AFQ W+ P T + +E Q ADI ISF GDH
Sbjct: 122 TPDLPRADVDQAIEKAFQLWSNVSPLTFTKVSEGQ----ADIMISFVRGDH 168
>sp|P79287|MMP20_PIG Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20 PE=2 SV=1
Length = 483
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 31 IKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQIL-------GSPRWPASKFSLTY---AF 80
IK Q + L+ T LD T+ ++ + + G P+W K +LTY +
Sbjct: 72 IKELQAFFGLRVTGKLDRTTMDVIKRPRCGVPDVANYRLFPGEPKW--KKNTLTYRISKY 129
Query: 81 LPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
P T + + A Q W+ F + ADI ISFE+GDHG
Sbjct: 130 TPSMTPAEVDKAMEMALQAWSSAVPLSFVRV-NAGEADIMISFETGDHG 177
>sp|Q9Y5R2|MMP24_HUMAN Matrix metalloproteinase-24 OS=Homo sapiens GN=MMP24 PE=2 SV=1
Length = 645
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 28/151 (18%)
Query: 1 MGKFGYL-NYDNSNNQTHANDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKM----- 54
+ +GYL YD+ + H+ + L+SA+ Q Y + T VLD T+ M
Sbjct: 85 LKSYGYLLPYDSRASALHSA-----KALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKPRC 139
Query: 55 ---------RTHDAELQILGSPRWPASKFSLT-YAFLPGT-RGDAINPVARAFQTWAPNT 103
R + L +W + + + + P D + +AF W T
Sbjct: 140 GVPDHPHLSRRRRNKRYALTGQKWRQKHITYSIHNYTPKVGELDTRKAIRQAFDVWQKVT 199
Query: 104 QFQFAE------SQDYRNADIKISFESGDHG 128
F E D + ADI I F SG HG
Sbjct: 200 PLTFEEVPYHEIKSDRKEADIMIFFASGFHG 230
>sp|P57748|MMP20_MOUSE Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1
Length = 482
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 31 IKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQ-------ILGSPRWPASKFSLTYAFLPG 83
IK Q+ + LK T LD T+ ++ + G P+W K LTY
Sbjct: 71 IKELQIFFGLKVTGKLDQNTMNVIKKPRCGVPDVANYRLFPGEPKW--KKNILTYRISKY 128
Query: 84 TRGDAINPVARAFQ----TWAPNTQFQFAESQDYRNADIKISFESGDHG 128
T + V +A Q W+ F ADI ISFE+GDHG
Sbjct: 129 TPSMSPTEVDKAIQMALHAWSTAVPLNFVRINS-GEADIMISFETGDHG 176
>sp|Q63341|MMP12_RAT Macrophage metalloelastase OS=Rattus norvegicus GN=Mmp12 PE=2 SV=1
Length = 465
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDA---ELQILGS----PRWPASKFSLTY 78
LLE ++ Q + L+ T LD T+ M T ++Q L + RW K LTY
Sbjct: 55 LLEEKLQEMQQFFGLEVTGQLDTSTLKIMHTSRCGVPDVQHLRAVPQRSRW--MKRYLTY 112
Query: 79 AFLPGT----RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
T R D +AFQ W+ T +F + ADI I F GDHG
Sbjct: 113 RIYNYTPDMKRADVDYIFQKAFQVWSDVTPLRFRKIHK-GEADITILFAFGDHG 165
>sp|Q9H239|MMP28_HUMAN Matrix metalloproteinase-28 OS=Homo sapiens GN=MMP28 PE=2 SV=2
Length = 520
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 82 PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
P RG V AFQ W+ + +F E+ ADI+++F GDH G
Sbjct: 149 PAVRG----AVRAAFQLWSNVSALEFWEAPATGPADIRLTFFQGDHNDG 193
>sp|O60882|MMP20_HUMAN Matrix metalloproteinase-20 OS=Homo sapiens GN=MMP20 PE=1 SV=3
Length = 483
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 31 IKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQIL-------GSPRWPASKFSLTY---AF 80
IK Q + L+ T LD T+ ++ + + G P+W K +LTY +
Sbjct: 72 IKELQAFFGLQVTGKLDQTTMNVIKKPRCGVPDVANYRLFPGEPKW--KKNTLTYRISKY 129
Query: 81 LPGTRGDAINP-VARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
P ++ V A Q W+ F ADI ISFE+GDHG
Sbjct: 130 TPSMSSVEVDKAVEMALQAWSSAVPLSFVRINS-GEADIMISFENGDHG 177
>sp|O13065|MMP18_XENLA Matrix metalloproteinase-18 OS=Xenopus laevis GN=mmp18 PE=2 SV=1
Length = 467
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 23 FDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILG-------SPRWPASKFS 75
F E LE Q + LK T LD TV M + +G S W K
Sbjct: 60 FTEKLEQM----QKFFGLKVTGTLDPKTVEVMEKPRCGVYDVGQYSTVAKSSAW--QKKD 113
Query: 76 LTYAFLPGT----RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDH 127
LTY L T + D + RAF+ W+ T F + +DI+ISF +GDH
Sbjct: 114 LTYRILNFTPDLPQADVETAIQRAFKVWSDVTPLTFTRIYN-EVSDIEISFTAGDH 168
>sp|Q0AB25|PRMA_ALHEH Ribosomal protein L11 methyltransferase OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=prmA PE=3 SV=1
Length = 294
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 19 NDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILGSP 67
++ D +E+LE +L HL+ T + DA TV +R ++LG+P
Sbjct: 33 SEPDDEEILEPGPGEQRLWSHLRLTALFDAATVDPLRLQARVAEVLGAP 81
>sp|Q90611|MMP2_CHICK 72 kDa type IV collagenase OS=Gallus gallus GN=MMP2 PE=1 SV=1
Length = 663
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKM---RTHDAELQILG----SPRWPASKFSLTY 78
+L+ +K Q + L T LD T+ M R + ++ P+W K +TY
Sbjct: 66 VLKDTLKKMQKFFGLPETGDLDQNTIETMKKPRCGNPDVANYNFFPRKPKW--EKNHITY 123
Query: 79 AFL-------PGTRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
+ P T DA ARAF+ W+ T +F D ADI I+F +HG G
Sbjct: 124 RIIGYTPDLDPETVDDAF---ARAFKVWSDVTPLRFNRIND-GEADIMINFGRWEHGDG 178
>sp|Q99PW6|MMP24_RAT Matrix metalloproteinase-24 OS=Rattus norvegicus GN=Mmp24 PE=2 SV=1
Length = 618
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 28/151 (18%)
Query: 1 MGKFGYL-NYDNSNNQTHANDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKM----- 54
+ +GYL Y++ + H+ + L+SA+ Q Y + T VLD T+ M
Sbjct: 58 LKSYGYLLPYESRASALHSG-----KALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKPRC 112
Query: 55 ---------RTHDAELQILGSPRWPASKFSLT-YAFLPGT-RGDAINPVARAFQTWAPNT 103
R + L +W + + + + P D + +AF W T
Sbjct: 113 GVPDHPHLSRRRRNKRYALTGQKWRQKHITYSIHNYTPKVGELDTRKAIRQAFDVWQKVT 172
Query: 104 QFQFAE------SQDYRNADIKISFESGDHG 128
F E D + ADI I F SG HG
Sbjct: 173 PLTFEEVPYHEIKSDRKEADIMIFFASGFHG 203
>sp|Q9R0S2|MMP24_MOUSE Matrix metalloproteinase-24 OS=Mus musculus GN=Mmp24 PE=1 SV=2
Length = 618
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 28/151 (18%)
Query: 1 MGKFGYL-NYDNSNNQTHANDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKM----- 54
+ +GYL Y++ + H+ + L+SA+ Q Y + T VLD T+ M
Sbjct: 58 LKSYGYLLPYESRASALHSG-----KALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKPRC 112
Query: 55 ---------RTHDAELQILGSPRWPASKFSLT-YAFLPGT-RGDAINPVARAFQTWAPNT 103
R + L +W + + + + P D + +AF W T
Sbjct: 113 GVPDHPHLSRRRRNKRYALTGQKWRQKHITYSIHNYTPKVGELDTRKAIRQAFDVWQKVT 172
Query: 104 QFQFAE------SQDYRNADIKISFESGDHG 128
F E D + ADI I F SG HG
Sbjct: 173 PLTFEEVPYHEIKSDRKEADIMIFFASGFHG 203
>sp|P28053|MMP1_BOVIN Interstitial collagenase OS=Bos taurus GN=MMP1 PE=1 SV=1
Length = 469
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMR-----THDAELQILGSPRWPASKFSLTYA- 79
L+ +K Q + L+ T DA T+ M+ D +L + +LTY
Sbjct: 59 LITEKLKQMQKFFGLRVTGKPDAETLNVMKQPRCGVPDVAPFVLTPGKSCWENTNLTYRI 118
Query: 80 --FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDH 127
+ P +R D + +AFQ W+ T F + + + ADI ISF GDH
Sbjct: 119 ENYTPDLSRADVDQAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISFVRGDH 168
>sp|O18767|MMP20_BOVIN Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20 PE=1 SV=1
Length = 481
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 31 IKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQIL-------GSPRWPASKFSLTY---AF 80
IK Q + L+ T LD T+ ++ + + G P+W K +LTY +
Sbjct: 70 IKELQEFFGLRVTGKLDRATMDVIKRPRCGVPDVANYRLFPGEPKW--KKNTLTYRISKY 127
Query: 81 LPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
P T + + A + W+ F + ADI ISFE+GDHG
Sbjct: 128 TPSMTPAEVDRAMEMALRAWSSAVPLNFVRI-NAGEADIMISFETGDHG 175
>sp|P39900|MMP12_HUMAN Macrophage metalloelastase OS=Homo sapiens GN=MMP12 PE=1 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAEL-------QILGSPRWPASKFSLTY 78
L++ I+ Q LK T LD T+ M + ++ G P W K +TY
Sbjct: 59 LMKEKIQEMQHFLGLKVTGQLDTSTLEMMHAPRCGVPDVHHFREMPGGPVW--RKHYITY 116
Query: 79 A---FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
+ P R D + +AFQ W+ T +F++ + ADI + F G HG
Sbjct: 117 RINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAHG 169
>sp|P07152|MMP10_RAT Stromelysin-2 OS=Rattus norvegicus GN=Mmp10 PE=2 SV=1
Length = 476
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 16/134 (11%)
Query: 6 YLNYDNSNNQTHANDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQ--- 62
Y N+ + Q D + I+ Q L+ T LD+ TV M +
Sbjct: 41 YYNFRKNEKQFFKRKDS--SPVVKKIEEMQKFLGLEMTGKLDSNTVEMMHKPRCGVPDVG 98
Query: 63 ----ILGSPRWPASKFS---LTYAF-LPGTRGDAINPVARAFQTWAPNTQFQFAESQDYR 114
GSP+W + S + Y LP D+ + RA + W T F+ +
Sbjct: 99 GFSTFPGSPKWRKNHISYRIVNYTLDLPRESVDSA--IERALKVWEEVTPLTFSRISE-G 155
Query: 115 NADIKISFESGDHG 128
ADI ISF G+HG
Sbjct: 156 EADIMISFAVGEHG 169
>sp|P28862|MMP3_MOUSE Stromelysin-1 OS=Mus musculus GN=Mmp3 PE=2 SV=2
Length = 477
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQILG-------SPRWPASKFSLTY 78
L+ I+ Q L+ T LD+ T+ M + +G SP+W K +TY
Sbjct: 59 LIVKKIQEMQKFLGLEMTGKLDSNTMELMHKPRCGVPDVGGFSTFPGSPKW--RKSHITY 116
Query: 79 AFLPGT----RGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
+ T R + + +A + W T F+ + ADI ISF G+HG
Sbjct: 117 RIVNYTPDLPRQSVDSAIEKALKVWEEVTPLTFSRISE-GEADIMISFAVGEHG 169
>sp|P79227|MMP12_RABIT Macrophage metalloelastase OS=Oryctolagus cuniculus GN=MMP12 PE=2
SV=1
Length = 464
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 26 LLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQ-------ILGSPRWPASKFSLTY 78
+E ++ Q L T LD T+ M + + G P W K +TY
Sbjct: 54 FIEEKVQEMQQFLGLNVTGQLDTSTLEMMHKPRCGVPDVYHFKTMPGRPVW--RKHYITY 111
Query: 79 A---FLPG-TRGDAINPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHG 128
+ P R D + +AFQ W+ T +F + + ADI I F SG HG
Sbjct: 112 RIKNYTPDMKREDVEYAIQKAFQVWSDVTPLKFRKITTGK-ADIMILFASGAHG 164
>sp|O88272|MMP23_RAT Matrix metalloproteinase-23 OS=Rattus norvegicus GN=Mmp23 PE=1 SV=1
Length = 391
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 68 RWPASKFSLTYAFLPGTRGDAINP------VARAFQTWAPNTQFQFAESQDYRNADIKIS 121
RW F+LTY L R + ++P +A AF+ W+ + F F E R +D+KI
Sbjct: 88 RW--DHFNLTYRILSFPR-NLLSPEETRRGLAAAFRMWSDVSPFSFREVAPERPSDLKIG 144
Query: 122 FESGDH 127
F +H
Sbjct: 145 FYPVNH 150
>sp|O55123|MMP10_MOUSE Stromelysin-2 OS=Mus musculus GN=Mmp10 PE=2 SV=1
Length = 476
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 16/134 (11%)
Query: 6 YLNYDNSNNQTHANDDDFDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAELQ--- 62
Y N+ + Q D + I+ Q L+ T LD+ T+ M +
Sbjct: 41 YYNFKKNEKQIFKRKDS--SPVVKKIQEMQKFLGLEMTGKLDSNTMELMHKPRCGVPDVG 98
Query: 63 ----ILGSPRWPASKFSLTYAFLPGT----RGDAINPVARAFQTWAPNTQFQFAESQDYR 114
GSP+W K +TY + T R + + +A + W T F+ +
Sbjct: 99 GFSTFPGSPKW--RKSHITYRIVNYTPDLPRQSVDSAIEKALKVWEEVTPLTFSRISE-G 155
Query: 115 NADIKISFESGDHG 128
ADI ISF G+HG
Sbjct: 156 EADIMISFAVGEHG 169
>sp|P64700|Y489_MYCBO Uncharacterized protein Mb0489c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb0489c PE=4 SV=1
Length = 348
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 23 FDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAEL 61
+E S KNY L H S +V G V + T DA +
Sbjct: 298 LNEFTSSLTKNYPLGIHADSVQVTSTGVVSRFSTRDAAI 336
>sp|P64699|Y479_MYCTU Uncharacterized protein Rv0479c/MT0497 OS=Mycobacterium
tuberculosis GN=Rv0479c PE=4 SV=1
Length = 348
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 23 FDELLESAIKNYQLNYHLKSTEVLDAGTVGKMRTHDAEL 61
+E S KNY L H S +V G V + T DA +
Sbjct: 298 LNEFTSSLTKNYPLGIHADSVQVTSTGVVSRFSTRDAAI 336
>sp|O88676|MMP23_MOUSE Matrix metalloproteinase-23 OS=Mus musculus GN=Mmp23 PE=2 SV=1
Length = 391
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 68 RWPASKFSLTYAFLPGTRGDAINP------VARAFQTWAPNTQFQFAESQDYRNADIKIS 121
RW F+LTY L R + ++P +A AF+ W+ + F F E R +D+KI
Sbjct: 88 RW--DHFNLTYRVLSFPR-NLLSPEETRRGLAAAFRMWSDVSPFSFREVAPERPSDLKIG 144
Query: 122 FESGDH 127
F +H
Sbjct: 145 FYPVNH 150
>sp|P14780|MMP9_HUMAN Matrix metalloproteinase-9 OS=Homo sapiens GN=MMP9 PE=1 SV=3
Length = 707
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 93 ARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
ARAF W+ T F R+ADI I F +HG G
Sbjct: 142 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDG 178
>sp|Q196W5|095L_IIV3 Probable matrix metalloproteinase 095L OS=Invertebrate iridescent
virus 3 GN=IIV3-095L PE=3 SV=1
Length = 363
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 90 NPVARAFQTWAPNTQFQFAESQDYRNADIKISFESGDHGAG 130
N + +F W+ + F + R+A I + FE+G HG G
Sbjct: 184 NVLHHSFWKWSKESMLAFQQVSLERDAQIVVRFENGSHGDG 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,020,306
Number of Sequences: 539616
Number of extensions: 2397493
Number of successful extensions: 7132
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 7109
Number of HSP's gapped (non-prelim): 49
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)