BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042323
         (322 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C8I|B Chain B, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
           Its Receptor Decay Accelerating Factor (Cd55) By Cryo
           Electron Microscopy At 16 A
          Length = 252

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 13/66 (19%)

Query: 49  LFVVYIPIAEIGRYLVDTYGSVLFWKNRKSGTLQELGDSEKAILLEESNVGVKGEESPQS 108
           L VV +P AE+G   VD             GT+ E G SE     + S  G  G  + QS
Sbjct: 113 LLVVCVPEAEMGCSTVD-------------GTVNEHGLSEGETAKKFSATGTNGTNTVQS 159

Query: 109 LIVQEG 114
           ++   G
Sbjct: 160 IVTNAG 165


>pdb|1H8T|B Chain B, Echovirus 11
 pdb|1UPN|B Chain B, Complex Of Echovirus Type 12 With Domains 3 And 4 Of Its
           Receptor Decay Accelerating Factor (Cd55) By Cryo
           Electron Microscopy At 16 A
          Length = 262

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 13/66 (19%)

Query: 49  LFVVYIPIAEIGRYLVDTYGSVLFWKNRKSGTLQELGDSEKAILLEESNVGVKGEESPQS 108
           L VV +P AE+G   VD             GT+ E G SE     + S  G  G  + QS
Sbjct: 122 LLVVCVPEAEMGCSTVD-------------GTVNEHGLSEGETAKKFSATGTNGTNTVQS 168

Query: 109 LIVQEG 114
           ++   G
Sbjct: 169 IVTNAG 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,976,095
Number of Sequences: 62578
Number of extensions: 221315
Number of successful extensions: 402
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 3
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)