Query 042323
Match_columns 322
No_of_seqs 421 out of 1814
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:07:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2765 Predicted membrane pro 100.0 4.9E-42 1.1E-46 312.6 24.7 302 1-320 5-316 (416)
2 PF06027 DUF914: Eukaryotic pr 99.9 3.1E-20 6.8E-25 173.0 18.5 153 156-316 77-229 (334)
3 PRK11272 putative DMT superfam 99.7 4.1E-15 8.8E-20 137.6 17.1 122 166-305 77-199 (292)
4 PLN00411 nodulin MtN21 family 99.6 4.8E-15 1E-19 140.6 16.8 141 158-305 79-240 (358)
5 PRK15430 putative chlorampheni 99.6 4E-15 8.7E-20 138.0 15.0 98 160-271 75-172 (296)
6 TIGR00817 tpt Tpt phosphate/ph 99.6 7.3E-15 1.6E-19 136.5 16.6 137 155-306 62-198 (302)
7 TIGR00688 rarD rarD protein. T 99.6 3.4E-15 7.4E-20 135.4 14.0 101 157-271 69-169 (256)
8 TIGR00950 2A78 Carboxylate/Ami 99.6 2.4E-14 5.2E-19 129.7 16.6 137 155-305 44-180 (260)
9 PTZ00343 triose or hexose phos 99.6 4.1E-14 8.9E-19 134.2 17.6 140 157-306 113-252 (350)
10 PRK11453 O-acetylserine/cystei 99.6 5E-14 1.1E-18 130.8 17.1 121 169-300 70-191 (299)
11 KOG4314 Predicted carbohydrate 99.6 4.9E-15 1.1E-19 125.3 7.2 154 155-320 50-206 (290)
12 PRK11689 aromatic amino acid e 99.6 9E-14 1.9E-18 128.9 14.9 111 162-272 65-180 (295)
13 PRK10532 threonine and homoser 99.5 7.7E-13 1.7E-17 122.5 16.7 125 160-305 73-197 (293)
14 TIGR03340 phn_DUF6 phosphonate 99.4 2.5E-12 5.4E-17 118.3 14.0 107 155-270 60-166 (281)
15 COG0697 RhaT Permeases of the 99.4 2.6E-11 5.5E-16 110.7 17.2 108 157-271 69-177 (292)
16 KOG3912 Predicted integral mem 99.3 6.9E-11 1.5E-15 105.2 12.9 149 164-317 92-241 (372)
17 TIGR00776 RhaT RhaT L-rhamnose 99.3 1.2E-10 2.5E-15 107.8 14.8 114 155-270 56-174 (290)
18 PF04142 Nuc_sug_transp: Nucle 99.2 3.3E-10 7.2E-15 102.1 16.3 149 154-307 13-168 (244)
19 KOG4510 Permease of the drug/m 99.2 1.5E-11 3.3E-16 108.7 5.2 139 161-306 100-242 (346)
20 PF08449 UAA: UAA transporter 99.1 2E-09 4.3E-14 100.2 16.9 142 158-304 64-205 (303)
21 KOG2766 Predicted membrane pro 99.1 2.2E-12 4.7E-17 113.3 -3.9 148 158-315 78-225 (336)
22 PF13536 EmrE: Multidrug resis 99.1 4.9E-10 1.1E-14 89.0 7.8 73 161-234 37-110 (113)
23 COG2962 RarD Predicted permeas 98.8 7.4E-08 1.6E-12 86.9 14.1 131 155-308 69-199 (293)
24 PF00892 EamA: EamA-like trans 98.8 1.1E-08 2.4E-13 81.4 6.6 79 151-229 47-125 (126)
25 COG5006 rhtA Threonine/homoser 98.7 1.4E-07 3E-12 83.4 12.0 132 154-305 67-198 (292)
26 KOG2234 Predicted UDP-galactos 98.7 4.2E-07 9.1E-12 84.2 15.1 144 158-306 92-236 (345)
27 KOG1441 Glucose-6-phosphate/ph 98.6 8.3E-08 1.8E-12 89.0 8.2 138 156-307 81-220 (316)
28 TIGR00950 2A78 Carboxylate/Ami 98.6 2.1E-07 4.6E-12 84.1 10.8 67 160-226 194-260 (260)
29 PRK15051 4-amino-4-deoxy-L-ara 98.6 3.5E-07 7.5E-12 72.4 9.9 68 162-229 41-108 (111)
30 COG2510 Predicted membrane pro 98.6 5.4E-08 1.2E-12 77.2 4.8 74 157-230 66-139 (140)
31 PRK11453 O-acetylserine/cystei 98.5 2.6E-06 5.6E-11 79.1 12.9 76 157-232 214-289 (299)
32 PLN00411 nodulin MtN21 family 98.5 1E-06 2.2E-11 83.8 10.3 66 167-232 265-330 (358)
33 PRK10532 threonine and homoser 98.4 1.6E-06 3.4E-11 80.4 11.1 70 163-232 214-283 (293)
34 KOG1443 Predicted integral mem 98.4 6.2E-07 1.3E-11 81.3 7.1 151 147-309 73-223 (349)
35 PRK11689 aromatic amino acid e 98.4 3.3E-06 7.2E-11 78.3 11.7 70 162-231 219-288 (295)
36 PRK11272 putative DMT superfam 98.3 5.1E-06 1.1E-10 76.8 9.9 72 159-230 214-285 (292)
37 TIGR03340 phn_DUF6 phosphonate 98.2 3.1E-06 6.7E-11 77.9 6.7 72 157-228 210-281 (281)
38 PRK02971 4-amino-4-deoxy-L-ara 98.1 2.5E-05 5.3E-10 63.5 9.5 71 161-231 51-123 (129)
39 PF06800 Sugar_transport: Suga 98.1 7.6E-05 1.6E-09 67.8 13.0 114 155-270 42-160 (269)
40 PF03151 TPT: Triose-phosphate 98.0 3.1E-05 6.8E-10 64.2 9.3 72 156-227 79-150 (153)
41 TIGR00817 tpt Tpt phosphate/ph 98.0 2.9E-05 6.4E-10 72.0 9.0 64 168-231 231-294 (302)
42 PRK15430 putative chlorampheni 97.8 8.9E-05 1.9E-09 68.7 9.1 70 161-230 216-285 (296)
43 KOG1444 Nucleotide-sugar trans 97.8 0.00015 3.3E-09 66.5 10.2 132 160-306 79-210 (314)
44 PRK10452 multidrug efflux syst 97.8 0.00012 2.7E-09 58.5 8.3 71 162-232 34-105 (120)
45 PTZ00343 triose or hexose phos 97.8 0.0003 6.5E-09 66.9 12.3 69 161-229 279-347 (350)
46 PRK10650 multidrug efflux syst 97.8 0.00018 3.8E-09 56.6 8.8 68 161-228 38-106 (109)
47 PRK09541 emrE multidrug efflux 97.8 0.00017 3.8E-09 56.8 8.4 70 161-230 33-103 (110)
48 COG2076 EmrE Membrane transpor 97.8 0.00017 3.8E-09 56.0 8.2 69 161-229 33-102 (106)
49 PRK11431 multidrug efflux syst 97.7 0.00028 6E-09 55.2 8.9 69 161-229 32-101 (105)
50 KOG1442 GDP-fucose transporter 97.7 3.8E-05 8.2E-10 68.9 3.6 120 175-306 119-238 (347)
51 KOG1581 UDP-galactose transpor 97.6 0.019 4.1E-07 52.6 20.0 138 158-301 83-220 (327)
52 TIGR00776 RhaT RhaT L-rhamnose 97.5 0.00031 6.7E-09 65.0 8.0 75 155-229 208-287 (290)
53 COG0697 RhaT Permeases of the 97.4 0.00097 2.1E-08 60.5 9.3 75 157-231 214-288 (292)
54 PF05653 Mg_trans_NIPA: Magnes 97.3 0.0011 2.3E-08 61.8 8.9 64 167-230 59-122 (300)
55 KOG1580 UDP-galactose transpor 97.2 0.00082 1.8E-08 59.2 5.7 136 160-303 87-222 (337)
56 PF00893 Multi_Drug_Res: Small 97.1 0.0018 3.8E-08 49.5 6.8 58 163-220 34-92 (93)
57 PRK13499 rhamnose-proton sympo 97.0 0.014 3E-07 55.1 12.8 110 155-265 70-191 (345)
58 COG5006 rhtA Threonine/homoser 96.6 0.015 3.3E-07 52.0 8.8 72 155-226 206-278 (292)
59 PF10639 UPF0546: Uncharacteri 96.5 0.0098 2.1E-07 47.0 6.6 67 162-228 45-112 (113)
60 PF08449 UAA: UAA transporter 96.4 0.014 3E-07 54.3 8.4 74 157-230 224-297 (303)
61 KOG2922 Uncharacterized conser 96.2 0.0055 1.2E-07 56.5 3.9 69 164-232 70-138 (335)
62 PF06027 DUF914: Eukaryotic pr 96.1 0.027 5.9E-07 53.1 8.4 73 161-233 236-308 (334)
63 KOG1582 UDP-galactose transpor 96.0 0.0078 1.7E-07 54.3 4.1 132 162-304 110-241 (367)
64 COG5070 VRG4 Nucleotide-sugar 95.7 0.023 5.1E-07 49.9 5.6 145 154-310 68-212 (309)
65 PF06800 Sugar_transport: Suga 95.5 0.033 7.1E-07 50.7 6.2 64 156-219 193-256 (269)
66 COG4975 GlcU Putative glucose 95.4 0.0026 5.7E-08 56.5 -1.4 114 155-270 56-174 (288)
67 COG2962 RarD Predicted permeas 95.3 0.08 1.7E-06 48.4 8.0 76 155-230 208-283 (293)
68 TIGR00803 nst UDP-galactose tr 94.9 0.04 8.7E-07 48.7 4.9 61 167-227 161-221 (222)
69 PF03151 TPT: Triose-phosphate 94.9 0.094 2E-06 43.1 6.9 62 249-310 1-62 (153)
70 PF06379 RhaT: L-rhamnose-prot 94.3 0.19 4.1E-06 47.1 7.8 113 156-268 71-193 (344)
71 KOG1583 UDP-N-acetylglucosamin 93.8 0.038 8.3E-07 50.1 2.2 136 150-294 60-205 (330)
72 TIGR00688 rarD rarD protein. T 93.2 0.29 6.4E-06 44.0 7.0 49 157-205 207-255 (256)
73 PF04657 DUF606: Protein of un 92.7 0.71 1.5E-05 37.8 7.9 67 161-227 67-138 (138)
74 KOG1580 UDP-galactose transpor 92.6 0.21 4.5E-06 44.4 4.8 71 157-227 240-310 (337)
75 KOG2765 Predicted membrane pro 91.8 0.3 6.5E-06 46.2 5.2 148 5-233 242-393 (416)
76 KOG4510 Permease of the drug/m 91.1 0.04 8.6E-07 49.8 -1.3 75 155-229 250-324 (346)
77 PRK13499 rhamnose-proton sympo 90.8 0.86 1.9E-05 43.2 7.3 77 155-232 257-343 (345)
78 TIGR00803 nst UDP-galactose tr 88.3 11 0.00023 33.1 12.0 87 186-272 6-109 (222)
79 COG4975 GlcU Putative glucose 87.8 0.17 3.6E-06 45.3 0.2 67 153-219 204-270 (288)
80 PRK02237 hypothetical protein; 85.2 6.3 0.00014 30.7 7.5 44 188-231 63-106 (109)
81 KOG1581 UDP-galactose transpor 84.4 1.3 2.7E-05 41.0 4.0 73 155-227 238-310 (327)
82 PRK10666 ammonium transporter; 82.2 52 0.0011 32.3 14.4 127 160-301 222-354 (428)
83 PF04142 Nuc_sug_transp: Nucle 82.2 13 0.00028 33.4 9.7 52 168-219 191-242 (244)
84 KOG1444 Nucleotide-sugar trans 82.1 4.6 9.9E-05 37.6 6.7 79 152-230 222-300 (314)
85 PF02694 UPF0060: Uncharacteri 80.7 6.2 0.00013 30.7 5.9 53 179-231 51-104 (107)
86 KOG1443 Predicted integral mem 80.5 26 0.00057 32.6 10.9 67 162-228 247-313 (349)
87 KOG1441 Glucose-6-phosphate/ph 80.4 0.6 1.3E-05 43.7 0.4 68 163-230 240-307 (316)
88 COG1742 Uncharacterized conser 79.3 12 0.00027 28.9 7.1 41 192-232 66-106 (109)
89 PF13127 DUF3955: Protein of u 79.2 0.92 2E-05 31.9 0.9 39 6-44 2-42 (63)
90 PF00892 EamA: EamA-like trans 78.7 2.6 5.6E-05 32.5 3.5 44 258-309 1-44 (126)
91 PF11742 DUF3302: Protein of u 74.5 23 0.00049 26.0 7.0 67 248-316 6-74 (78)
92 PF05297 Herpes_LMP1: Herpesvi 72.8 1.2 2.5E-05 40.7 0.0 50 177-226 42-93 (381)
93 PF07857 DUF1632: CEO family ( 71.1 38 0.00082 30.8 9.3 114 157-270 54-205 (254)
94 TIGR01299 synapt_SV2 synaptic 70.6 58 0.0012 34.4 11.9 45 182-226 199-245 (742)
95 COG2510 Predicted membrane pro 69.8 23 0.00051 28.7 6.8 51 249-306 4-54 (140)
96 TIGR03644 marine_trans_1 proba 64.6 1.4E+02 0.0031 29.0 14.0 76 206-297 264-339 (404)
97 PF00909 Ammonium_transp: Ammo 64.5 1.4E+02 0.0031 28.8 14.8 128 156-299 188-323 (399)
98 KOG1582 UDP-galactose transpor 62.1 48 0.001 30.5 8.0 53 180-232 282-334 (367)
99 KOG4831 Unnamed protein [Funct 62.1 13 0.00028 28.9 3.8 67 163-229 57-124 (125)
100 COG5070 VRG4 Nucleotide-sugar 61.5 18 0.0004 32.2 5.1 66 161-226 227-292 (309)
101 COG3238 Uncharacterized protei 53.3 46 0.00099 27.7 6.0 69 160-228 71-144 (150)
102 PRK10213 nepI ribonucleoside t 52.6 2.1E+02 0.0045 27.1 12.1 45 182-226 52-98 (394)
103 PF04342 DUF486: Protein of un 52.0 1.1E+02 0.0024 23.8 8.1 52 178-229 55-107 (108)
104 COG3086 RseC Positive regulato 50.6 27 0.00059 28.8 4.1 28 178-205 68-95 (150)
105 COG3169 Uncharacterized protei 46.1 77 0.0017 24.4 5.6 31 199-229 84-114 (116)
106 TIGR00895 2A0115 benzoate tran 44.2 2.3E+02 0.005 25.9 10.2 43 183-225 50-94 (398)
107 COG0004 AmtB Ammonia permease 42.4 3.3E+02 0.0072 26.5 10.7 82 200-298 246-328 (409)
108 PRK10862 SoxR reducing system 41.7 38 0.00083 28.2 3.9 28 178-205 68-95 (154)
109 PRK10263 DNA translocase FtsK; 40.4 2.8E+02 0.006 31.4 10.9 18 191-208 83-100 (1355)
110 PF06379 RhaT: L-rhamnose-prot 39.9 2.5E+02 0.0055 26.7 9.3 77 154-231 255-341 (344)
111 TIGR00836 amt ammonium transpo 39.8 3.6E+02 0.0079 26.2 13.7 125 159-299 197-328 (403)
112 PF11700 ATG22: Vacuole efflux 39.8 2.3E+02 0.005 28.1 9.7 52 208-269 95-149 (477)
113 KOG1583 UDP-N-acetylglucosamin 38.9 27 0.00059 32.1 2.7 46 184-229 268-313 (330)
114 PF04246 RseC_MucC: Positive r 38.3 44 0.00095 26.9 3.7 21 184-204 67-87 (135)
115 PF11368 DUF3169: Protein of u 37.8 1.1E+02 0.0023 27.5 6.5 33 1-33 1-33 (248)
116 COG3004 NhaA Na+/H+ antiporter 37.7 3.7E+02 0.0079 25.6 11.7 102 170-290 109-217 (390)
117 KOG1442 GDP-fucose transporter 35.7 14 0.00031 33.9 0.4 73 155-227 252-324 (347)
118 PF11139 DUF2910: Protein of u 35.6 62 0.0013 28.2 4.5 78 152-229 109-210 (214)
119 PF05653 Mg_trans_NIPA: Magnes 34.6 1.3E+02 0.0028 28.0 6.6 63 170-232 225-294 (300)
120 PRK11663 regulatory protein Uh 32.6 2.9E+02 0.0063 26.4 9.1 46 182-227 55-102 (434)
121 PF04657 DUF606: Protein of un 32.4 1.5E+02 0.0033 24.0 6.0 51 250-307 3-54 (138)
122 PTZ00101 rhomboid-1 protease; 31.0 4.2E+02 0.0092 24.3 11.8 16 247-262 221-236 (278)
123 CHL00196 psbY photosystem II p 29.9 69 0.0015 19.8 2.6 21 247-267 5-25 (36)
124 TIGR00891 2A0112 putative sial 29.7 4.4E+02 0.0096 24.2 11.7 44 182-225 44-89 (405)
125 PRK00259 intracellular septati 28.9 3.7E+02 0.008 23.0 12.2 34 198-232 36-70 (179)
126 PF00689 Cation_ATPase_C: Cati 24.8 4E+02 0.0086 22.0 9.1 30 151-180 44-74 (182)
127 PRK08633 2-acyl-glycerophospho 24.7 8.9E+02 0.019 26.4 12.1 12 186-197 270-281 (1146)
128 KOG2234 Predicted UDP-galactos 23.4 6.5E+02 0.014 24.0 10.5 54 176-229 268-321 (345)
129 PF06298 PsbY: Photosystem II 22.3 1.2E+02 0.0027 18.7 2.7 20 248-267 6-25 (36)
130 PF06570 DUF1129: Protein of u 21.2 5E+02 0.011 22.4 7.6 23 247-269 147-169 (206)
131 PF09656 PGPGW: Putative trans 20.9 2.8E+02 0.006 18.7 4.7 43 213-270 4-46 (53)
132 PRK13240 pbsY photosystem II p 20.7 1.2E+02 0.0027 19.2 2.6 20 248-267 6-25 (40)
133 PF06570 DUF1129: Protein of u 20.5 5.6E+02 0.012 22.1 9.9 24 247-270 178-201 (206)
134 PF10131 PTPS_related: 6-pyruv 20.2 9.7E+02 0.021 24.7 13.5 65 159-226 52-116 (616)
No 1
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.9e-42 Score=312.64 Aligned_cols=302 Identities=36% Similarity=0.589 Sum_probs=217.9
Q ss_pred CcchhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCC--cceEEEEeccceehhhhhhHhhhhHHHhhcccceeecccCc
Q 042323 1 MTSEVWKWGLGLIYIVAVAIIWIAASFVVQSVVDAGV--SPFLVTYICNSLFVVYIPIAEIGRYLVDTYGSVLFWKNRKS 78 (322)
Q Consensus 1 ~~~~~~~~~lG~~~~~~v~v~Wv~ss~l~~~l~~~~~--~Pf~~t~~~~s~f~l~lp~~~~~~~~~~~~~~~~~~~~~~~ 78 (322)
|..+++||.+|++++++|+++||+||+++|++|++++ ||||+||+|+++|++|+|.+.+... .+....||.+++
T Consensus 5 ~~~~~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~----~~~~~~~R~~~~ 80 (416)
T KOG2765|consen 5 GFTKRWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDA----PWRILETRSKRS 80 (416)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcc----hhhhhhhhcccc
Confidence 4567889999999999999999999999999998875 9999999999999999987653111 111112343332
Q ss_pred CcccccCchhhhhhhhccCCC----CCCCC--CCCcccccccc--ccccccccCCCCcccccccccCCchhhhhhhhhcC
Q 042323 79 GTLQELGDSEKAILLEESNVG----VKGEE--SPQSLIVQEGE--IGQQEKSIDSGSEFVSDEFQSSLPIVEAEESAAKG 150 (322)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (322)
.... . .....+.+.+ .++.+ .+.++..|+.. .++++ .++++..+.+.. .+.+....+.-+.++
T Consensus 81 ~~~~-~-----~e~d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~-~~~~~s~~~e~~--~~~~~~~rs~l~~~~ 151 (416)
T KOG2765|consen 81 NHAI-M-----EEADAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGE-EEKPESTNLEVR--EKANTKKRSNLKERG 151 (416)
T ss_pred chhh-h-----hhhhhhccccccccccccccccCCceeeecccccccccc-ccCCCCcccccc--ccCCcccccchhhhh
Confidence 1110 0 0000111111 11111 11222222211 00000 000011110000 000000001124456
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 151 RWTRTRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 151 ~l~~~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
+++.++..+.++.+|.+|+++|+.++.|+.+++++..+++.+++.+||.+++.++..||+++.|.+++++++.||+++..
T Consensus 152 ~~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~ 231 (416)
T KOG2765|consen 152 KLTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTM 231 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEe
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 042323 231 GDSENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFTKL 310 (322)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~ 310 (322)
++..+. ++....++..|++++++||+.||+|.++.||..++++ .++|...++|++++++.+++||..+++++.+.
T Consensus 232 ~~s~~~--~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg---~rvdi~lffGfvGLfnllllwP~l~iL~~~~~ 306 (416)
T KOG2765|consen 232 GDSKQN--SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEG---ERVDIQLFFGFVGLFNLLLLWPPLIILDFFGE 306 (416)
T ss_pred cccccc--ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 876543 3344566789999999999999999999999887762 28999999999999999999999999999999
Q ss_pred ccccCccccc
Q 042323 311 EPFYRLTLKQ 320 (322)
Q Consensus 311 ~~~~~~~~~~ 320 (322)
|.|+.|...+
T Consensus 307 e~F~lP~~~q 316 (416)
T KOG2765|consen 307 ERFELPSSTQ 316 (416)
T ss_pred CcccCCCCce
Confidence 9999987654
No 2
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.85 E-value=3.1e-20 Score=173.04 Aligned_cols=153 Identities=35% Similarity=0.529 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCC
Q 042323 156 RVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSEN 235 (322)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~ 235 (322)
+.+|..++.+++...+|++.+.|++||+.+.++++.+++-+|+++++++++|+|+++.+++|++++++|++++...|...
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~ 156 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS 156 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999988877654
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCcccccC
Q 042323 236 SSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFTKLEPFYR 315 (322)
Q Consensus 236 ~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~ 315 (322)
+ +++....+++.||+++++||++||+++++.++.++ +.+...+.++.++++.++..+...++|..++++++|
T Consensus 157 ~-~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~-------~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w 228 (334)
T PF06027_consen 157 G-SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVK-------KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHW 228 (334)
T ss_pred c-ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcc-------cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCC
Confidence 3 12234567899999999999999999999999887 356788999999999999999999999999998877
Q ss_pred c
Q 042323 316 L 316 (322)
Q Consensus 316 ~ 316 (322)
.
T Consensus 229 ~ 229 (334)
T PF06027_consen 229 T 229 (334)
T ss_pred C
Confidence 5
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.66 E-value=4.1e-15 Score=137.64 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHh-cccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCcccccCCC
Q 042323 166 PFWFLAQLTFNLSL-KYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSVSATAS 244 (322)
Q Consensus 166 ~~~~~~~~~~~~al-~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~~~~~~ 244 (322)
+....++.+++++. ++++++.++++.++.|+++.+++++ +|||+++++++|++++++|+.++..++.. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~---------~ 146 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL---------S 146 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc---------c
Confidence 33556778889999 9999999999999999999999986 69999999999999999999987543211 1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 042323 245 NPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALIL 305 (322)
Q Consensus 245 ~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~ 305 (322)
....|++++++|+++||.|.+..||..+ + ++...+.++..++++.+.+.....
T Consensus 147 ~~~~G~l~~l~a~~~~a~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~ 199 (292)
T PRK11272 147 GNPWGAILILIASASWAFGSVWSSRLPL-------P-VGMMAGAAEMLAAGVVLLIASLLS 199 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCC-------C-cchHHHHHHHHHHHHHHHHHHHHc
Confidence 2347999999999999999999998532 1 223455677788877777766543
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.65 E-value=4.8e-15 Score=140.56 Aligned_cols=141 Identities=17% Similarity=0.261 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHH------hcCcccHHHHHHHHHHHHhhheeecC
Q 042323 158 AKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLF------LGEKFTWVKLVSVLLCMAGTIIVSLG 231 (322)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~------l~er~s~~~~~gv~l~~~Gv~lv~~~ 231 (322)
.+..+ .+++.++.+.++++|++|++++.++++.+++|+|++++++++ ++||+++++++|++++++|++++...
T Consensus 79 ~~l~l-~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 79 SKIGL-LGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 33333 343335677789999999999999999999999999999999 69999999999999999999977643
Q ss_pred CCCC--------------Ccc-cccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 042323 232 DSEN--------------SSS-VSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLI 296 (322)
Q Consensus 232 ~~~~--------------~~~-~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l 296 (322)
+... ... ......+...|++++++|+++||+|+++.|+..++. -+....++++++++.+
T Consensus 158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~------~~~~~~t~~~~~~~~~ 231 (358)
T PLN00411 158 HGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY------PAAFTVSFLYTVCVSI 231 (358)
T ss_pred cCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CcHhHHHHHHHHHHHH
Confidence 2210 000 001112235699999999999999999999865532 1334556677777766
Q ss_pred HHHHHHHHH
Q 042323 297 IFLPVALIL 305 (322)
Q Consensus 297 ~~~p~~~~~ 305 (322)
.+.+.....
T Consensus 232 ~~~~~~l~~ 240 (358)
T PLN00411 232 VTSMIGLVV 240 (358)
T ss_pred HHHHHHHHH
Confidence 665555543
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.64 E-value=4e-15 Score=137.97 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCccc
Q 042323 160 VSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSV 239 (322)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~ 239 (322)
..+.++++.++++.++++|++++++++++++.++.|+++.+++++++|||+++++|+|++++++|++++..+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~------ 148 (296)
T PRK15430 75 MLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG------ 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC------
Confidence 34456666788899999999999999999999999999999999999999999999999999999998764321
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 042323 240 SATASNPLLGDILSLASAGLYAVYITLIRKKL 271 (322)
Q Consensus 240 ~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~ 271 (322)
.. .+++++++++||.|.++.|+..
T Consensus 149 ----~~----~~~~l~aa~~~a~~~i~~r~~~ 172 (296)
T PRK15430 149 ----SL----PIIALGLAFSFAFYGLVRKKIA 172 (296)
T ss_pred ----Cc----cHHHHHHHHHHHHHHHHHHhcC
Confidence 11 1468889999999999998853
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.64 E-value=7.3e-15 Score=136.49 Aligned_cols=137 Identities=18% Similarity=0.292 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCC
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSE 234 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~ 234 (322)
++.++..+..+++.+++..+.++|++|++++.++++.+++|+|+++++++++|||+++++++|++++++|+++....+.
T Consensus 62 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~- 140 (302)
T TIGR00817 62 SALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTEL- 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcc-
Confidence 3455666677777788889999999999999999999999999999999999999999999999999999986542221
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 042323 235 NSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILH 306 (322)
Q Consensus 235 ~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~ 306 (322)
.....|++++++|+++||+|.++.||..+++ +.++..++.++..++++++.|+....+
T Consensus 141 ---------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-----~~~~~~~~~~~~~~~~~~l~p~~~~~~ 198 (302)
T TIGR00817 141 ---------SFNWAGFLSAMISNITFVSRNIFSKKAMTIK-----SLDKTNLYAYISIMSLFLLSPPAFITE 198 (302)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHHhhccC-----CCCcccHHHHHHHHHHHHHHHHHHHHc
Confidence 2245799999999999999999999965532 467888889999999999999887654
No 7
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.64 E-value=3.4e-15 Score=135.42 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCC
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENS 236 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~ 236 (322)
.+......+++.++++.++++|++++++++++++.++.|+|+++++++++|||++++++++++++++|++++..++.
T Consensus 69 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~--- 145 (256)
T TIGR00688 69 LILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG--- 145 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC---
Confidence 34455667777888999999999999999999999999999999999999999999999999999999998764321
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 042323 237 SSVSATASNPLLGDILSLASAGLYAVYITLIRKKL 271 (322)
Q Consensus 237 ~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~ 271 (322)
... .++++++++||.|.+..|+..
T Consensus 146 -------~~~----~~~l~aa~~~a~~~i~~~~~~ 169 (256)
T TIGR00688 146 -------SLP----WEALVLAFSFTAYGLIRKALK 169 (256)
T ss_pred -------Cch----HHHHHHHHHHHHHHHHHhhcC
Confidence 111 467899999999999999853
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.61 E-value=2.4e-14 Score=129.71 Aligned_cols=137 Identities=22% Similarity=0.284 Sum_probs=110.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCC
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSE 234 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~ 234 (322)
++..+....+++...+++.++++|++|+++++++++.++.|+++++++++++|||+++++++|++++++|++++..++..
T Consensus 44 ~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~ 123 (260)
T TIGR00950 44 KRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL 123 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc
Confidence 34445555666667889999999999999999999999999999999999999999999999999999999987654321
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 042323 235 NSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALIL 305 (322)
Q Consensus 235 ~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~ 305 (322)
.....|++++++++++|+.+.++.|+..++. +.++.....+...++.++++|.....
T Consensus 124 ---------~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (260)
T TIGR00950 124 ---------SINPAGLLLGLGSGISFALGTVLYKRLVKKE-----GPELLQFTGWVLLLGALLLLPFAWFL 180 (260)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHhHHhhcC-----CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2346899999999999999999999965422 22344555567778888887776654
No 9
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.60 E-value=4.1e-14 Score=134.19 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCC
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENS 236 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~ 236 (322)
.++..+..+++....+...+.|+++++++.++++.++.|+|+++++++++|||++++++++++++++|+++....+.
T Consensus 113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~--- 189 (350)
T PTZ00343 113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL--- 189 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---
Confidence 44555566666555566677999999999999999999999999999999999999999999999999998875332
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 042323 237 SSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILH 306 (322)
Q Consensus 237 ~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~ 306 (322)
..++.|++++++|+++||+|+++.|+..++.+....+.++.....++.++++++++|+..+.+
T Consensus 190 -------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e 252 (350)
T PTZ00343 190 -------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFE 252 (350)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 124689999999999999999999997654321111356777777788899999999887654
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.59 E-value=5e-14 Score=130.81 Aligned_cols=121 Identities=16% Similarity=0.272 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcc-cchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCcccccCCCCCh
Q 042323 169 FLAQLTFNLSLKY-TTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSVSATASNPL 247 (322)
Q Consensus 169 ~~~~~~~~~al~~-~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~~~~~~~~~ 247 (322)
.....+++.+++| .+++.++++.+++|+++.+++++++|||+++++++|++++++|+.++..++.... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~-------~~~~ 142 (299)
T PRK11453 70 FGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQ-------HVAM 142 (299)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCc-------chhH
Confidence 3445577889988 5889999999999999999999999999999999999999999998875432211 2235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 042323 248 LGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLP 300 (322)
Q Consensus 248 ~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p 300 (322)
.|++++++++++||+|.++.|+..++.+ .........++++.+.+...+
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 191 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHST----RPAVMSLVVWSALIPIIPFFV 191 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC----ccchhHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999644321 223334444555554443333
No 11
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.57 E-value=4.9e-15 Score=125.32 Aligned_cols=154 Identities=24% Similarity=0.427 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCC
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSE 234 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~ 234 (322)
|..+.....+.++|.++|+.|..|++.+++++++.+.++...|+.+++++.+++|+...+++++++++.|++++...|..
T Consensus 50 k~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~ 129 (290)
T KOG4314|consen 50 KLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE 129 (290)
T ss_pred eeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch
Confidence 33344445566779999999999999999999999999999999999999999999999999999999999999977765
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCccc--
Q 042323 235 NSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFTKLEP-- 312 (322)
Q Consensus 235 ~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~-- 312 (322)
. .+.+.|+..+++||..-|+|.++.|+.+++.+ --+...++...+.++..+.+...+++.++++|.
T Consensus 130 ~--------a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn----~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~q 197 (290)
T KOG4314|consen 130 H--------ADEIIGIACAVGSAFMAALYKVLFKMFIGNAN----FGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQ 197 (290)
T ss_pred h--------hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCc----chhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHH
Confidence 4 35789999999999999999999999887654 345677777778888888887777888887775
Q ss_pred -ccCccccc
Q 042323 313 -FYRLTLKQ 320 (322)
Q Consensus 313 -~~~~~~~~ 320 (322)
|...+|+-
T Consensus 198 sFA~~PWG~ 206 (290)
T KOG4314|consen 198 SFAAAPWGC 206 (290)
T ss_pred HHhhCCchh
Confidence 44566653
No 12
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.55 E-value=9e-14 Score=128.87 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHhc----ccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCc
Q 042323 162 LLICPFWFLAQLTFNLSLK----YTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSS 237 (322)
Q Consensus 162 l~~~~~~~~~~~~~~~al~----~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~ 237 (322)
+.+++..++++.+++.|++ +++++.++++.++.|+++.+++++++|||+++++++|++++++|++++..++.....
T Consensus 65 ~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~ 144 (295)
T PRK11689 65 LAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSL 144 (295)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchh
Confidence 3444455666677777765 467788999999999999999999999999999999999999999988765431110
Q ss_pred ccc-cCCCCChHHHHHHHHHHHHHHHHHHHHhhhCC
Q 042323 238 SVS-ATASNPLLGDILSLASAGLYAVYITLIRKKLP 272 (322)
Q Consensus 238 ~~~-~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~ 272 (322)
.+. ....+...|++++++|+++||+|.++.||..+
T Consensus 145 ~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~ 180 (295)
T PRK11689 145 AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYAR 180 (295)
T ss_pred hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 000 00112357999999999999999999999644
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.50 E-value=7.7e-13 Score=122.51 Aligned_cols=125 Identities=21% Similarity=0.193 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCccc
Q 042323 160 VSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSV 239 (322)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~ 239 (322)
..+..+++.+..+.++++|++|++++.++++.++.|+++.+++ +|++.. +.++.++++|+.++..++.+..
T Consensus 73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~--- 143 (293)
T PRK10532 73 PLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVS--- 143 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcc---
Confidence 3445555677788899999999999999999999999999887 356554 4567788999998764332211
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 042323 240 SATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALIL 305 (322)
Q Consensus 240 ~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~ 305 (322)
..+..|++++++++++||.|.++.|+..++ .++... .++.+++++++.|+....
T Consensus 144 ----~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~-------~~~~~~-~~~~~~~~~~l~~~~~~~ 197 (293)
T PRK10532 144 ----HVDLTGAALALGAGACWAIYILSGQRAGAE-------HGPATV-AIGSLIAALIFVPIGALQ 197 (293)
T ss_pred ----cCChHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCchHH-HHHHHHHHHHHHHHHHHc
Confidence 224579999999999999999999996542 344444 456677777777766543
No 14
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.43 E-value=2.5e-12 Score=118.34 Aligned_cols=107 Identities=16% Similarity=0.107 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCC
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSE 234 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~ 234 (322)
++.+...+..+.....++.+++.|+++++++.++.+.++.|+++.+++++++|||+++++|+|++++++|++++..++..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~ 139 (281)
T TIGR03340 60 ATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA 139 (281)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 34455666677778889999999999999999999999999999999999999999999999999999999987654321
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 042323 235 NSSSVSATASNPLLGDILSLASAGLYAVYITLIRKK 270 (322)
Q Consensus 235 ~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~ 270 (322)
. ....|+.++++++++|++|.++.|+.
T Consensus 140 ~---------~~~~g~~~~l~aal~~a~~~i~~k~~ 166 (281)
T TIGR03340 140 Q---------HRRKAYAWALAAALGTAIYSLSDKAA 166 (281)
T ss_pred c---------cchhHHHHHHHHHHHHHHhhhhcccc
Confidence 1 12368889999999999999998874
No 15
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.37 E-value=2.6e-11 Score=110.71 Aligned_cols=108 Identities=31% Similarity=0.508 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHH-HHhcCcccHHHHHHHHHHHHhhheeecCCCCC
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSL-LFLGEKFTWVKLVSVLLCMAGTIIVSLGDSEN 235 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~-~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~ 235 (322)
..+..+.+++.....+.+++.++++++++.++++.++.|+++.++++ ++++||+++++++++++++.|++++..++...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 34556677777888999999999999999999999999999999997 66799999999999999999999998776544
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhC
Q 042323 236 SSSVSATASNPLLGDILSLASAGLYAVYITLIRKKL 271 (322)
Q Consensus 236 ~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~ 271 (322)
. .. ...|++++++++++||++.+..|+..
T Consensus 149 ~------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~ 177 (292)
T COG0697 149 G------IL-SLLGLLLALAAALLWALYTALVKRLS 177 (292)
T ss_pred h------hH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 01 46899999999999999999999865
No 16
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.27 E-value=6.9e-11 Score=105.25 Aligned_cols=149 Identities=21% Similarity=0.255 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCcccccCC
Q 042323 164 ICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSVSATA 243 (322)
Q Consensus 164 ~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~~~~~ 243 (322)
-.++...+..+.+.|+.+|+++..+++....-+|+.+++.-+++.+++.++|+|+.....|++++...|....+++....
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~ 171 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDY 171 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccc
Confidence 45567777888999999999999999999999999999999999999999999999999999988766543321111222
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCcc-cccCcc
Q 042323 244 SNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFTKLE-PFYRLT 317 (322)
Q Consensus 244 ~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~-~~~~~~ 317 (322)
++.+.|+++.+.|.+.-|...++-+|.+++. +++|....+|.+++|.+.+...+....+.... +|+..+
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-----nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~ 241 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-----NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNP 241 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-----cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCC
Confidence 4568999999999999999999998877654 68999999999999977766666666555443 555433
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.26 E-value=1.2e-10 Score=107.82 Aligned_cols=114 Identities=24% Similarity=0.324 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhh-hHHHHHHHHHHHHhcCcccHHH----HHHHHHHHHhhheee
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSS-TSSLFTFLVSLLFLGEKFTWVK----LVSVLLCMAGTIIVS 229 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~-t~Pvft~lls~~~l~er~s~~~----~~gv~l~~~Gv~lv~ 229 (322)
++.+...++.+..|..+|.+|+.|.++++++.+..+.+ +.++++.+++.+++|||.++++ ++|++++++|++++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 34666788889999999999999999999999988888 8899999999999999999999 999999999999887
Q ss_pred cCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 042323 230 LGDSENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKK 270 (322)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~ 270 (322)
..+.+.. .+++ ..+...|++++++|+++|+.|.+..|+.
T Consensus 136 ~~~~~~~-~~~~-~~~~~~Gi~~~l~sg~~y~~~~~~~~~~ 174 (290)
T TIGR00776 136 RSKDKSA-GIKS-EFNFKKGILLLLMSTIGYLVYVVVAKAF 174 (290)
T ss_pred ecccccc-cccc-ccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 6543221 0000 0223579999999999999999999975
No 18
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.24 E-value=3.3e-10 Score=102.08 Aligned_cols=149 Identities=25% Similarity=0.277 Sum_probs=118.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCC
Q 042323 154 RTRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDS 233 (322)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~ 233 (322)
.++......+-++++.+.|.+.++++++++++...++..+-.++|++++++++|+|++.+||+++++.++|++++..++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 44556667788888999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred CCCccc--c-----cCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 042323 234 ENSSSV--S-----ATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILH 306 (322)
Q Consensus 234 ~~~~~~--~-----~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~ 306 (322)
...+.+ . ....+...|.++.++++++-++..++.+|.+++. +.+...-.....+++.++..+...+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-----~~s~~~~N~qL~~~gi~~~~~~~~~~~ 167 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-----NVSLWIQNMQLYLFGILFNLLALLLSD 167 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 431111 1 1134567999999999999999999999988764 345555555556666666665554444
Q ss_pred c
Q 042323 307 F 307 (322)
Q Consensus 307 ~ 307 (322)
+
T Consensus 168 ~ 168 (244)
T PF04142_consen 168 G 168 (244)
T ss_pred c
Confidence 3
No 19
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.20 E-value=1.5e-11 Score=108.74 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCc---
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSS--- 237 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~--- 237 (322)
.+++|+..+.+..+.|||++|.+.++|++|.+++|+||.+++++++||+.++.+.++..+.+.||++++.+..-.++
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~ 179 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTE 179 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcc
Confidence 45677777777788899999999999999999999999999999999999999999999999999999887543221
Q ss_pred -ccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 042323 238 -SVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILH 306 (322)
Q Consensus 238 -~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~ 306 (322)
.+.+....+..|.+.++.++++-|.-.++.|+.-+ +.+......|..+++.+.........+
T Consensus 180 g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk-------~~h~~msvsyf~~i~lV~s~I~~~~ig 242 (346)
T KOG4510|consen 180 GEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGK-------NAHAIMSVSYFSLITLVVSLIGCASIG 242 (346)
T ss_pred ccccccccccCCchHHHHHhHhhhhhHHHHHHHhhc-------cccEEEEehHHHHHHHHHHHHHHhhcc
Confidence 11111133457889999999999988888898534 345555556667777766655554443
No 20
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.15 E-value=2e-09 Score=100.18 Aligned_cols=142 Identities=27% Similarity=0.362 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCc
Q 042323 158 AKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSS 237 (322)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~ 237 (322)
++..+..+++..++..+-+.|++|+|.....++.++.|+++++++.+++|+|.+.++++++++..+|+++....+.....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 64 LKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 34455667778889999999999999999999999999999999999999999999999999999999988877654431
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 042323 238 SVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALI 304 (322)
Q Consensus 238 ~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~ 304 (322)
...........|+++.+++.++.|.+.++.+|..++. +.++...+.+..+++.+..++....
T Consensus 144 ~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-----~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 144 SSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-----GKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222233599999999999999999999976544 4677888889999998888777766
No 21
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.12 E-value=2.2e-12 Score=113.35 Aligned_cols=148 Identities=26% Similarity=0.390 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCc
Q 042323 158 AKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSS 237 (322)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~ 237 (322)
++..++.++...-+|++..-|.|||+.+.+.++-+-.-..+.+++|+++|.|-.+.|+.|+++|+.|++++...|...+
T Consensus 78 ~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag- 156 (336)
T KOG2766|consen 78 WRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG- 156 (336)
T ss_pred HHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc-
Confidence 3346666666777888889999999999999998888888999999999999999999999999999999988876553
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCcccccC
Q 042323 238 SVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFTKLEPFYR 315 (322)
Q Consensus 238 ~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~ 315 (322)
+...++++..||.+.+++|-+||+.++......+ +.+...+++..+++|+++..+- ++.+..+..+.+|
T Consensus 157 -d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk-------n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w 225 (336)
T KOG2766|consen 157 -DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK-------NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHW 225 (336)
T ss_pred -cccCCCCCccCcEEEEecceeeeeccccHHHHHh-------cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEee
Confidence 3444578899999999999999999999988776 5788999999999999887666 6666666666555
No 22
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.07 E-value=4.9e-10 Score=89.03 Aligned_cols=73 Identities=27% Similarity=0.417 Sum_probs=64.2
Q ss_pred HHHHHHH-HHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCC
Q 042323 161 SLLICPF-WFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSE 234 (322)
Q Consensus 161 ~l~~~~~-~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~ 234 (322)
.+..+.+ ...++.++++|+++++ +.++++.+++|+|+.+++++++|||++++++++++++++|++++..++.+
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3444444 4588999999999999 58889999999999999999999999999999999999999999877654
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.85 E-value=7.4e-08 Score=86.92 Aligned_cols=131 Identities=22% Similarity=0.192 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCC
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSE 234 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~ 234 (322)
++.+....+.+.+.......|.+|.++-.+-++++=.+.+|++.++++.+++|||+++.||++++++.+||...+...++
T Consensus 69 p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~ 148 (293)
T COG2962 69 PKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS 148 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555666777778889999999999999999999999999999999999999999999999999999999976654332
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 042323 235 NSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFT 308 (322)
Q Consensus 235 ~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~ 308 (322)
- + ..++.=|++|+.|..+-|+ + ++++.+-++..++.-....+...+..+.+
T Consensus 149 l----------p----wval~la~sf~~Ygl~RK~-~--------~v~a~~g~~lE~l~l~p~al~yl~~l~~~ 199 (293)
T COG2962 149 L----------P----WVALALALSFGLYGLLRKK-L--------KVDALTGLTLETLLLLPVALIYLLFLADS 199 (293)
T ss_pred C----------c----HHHHHHHHHHHHHHHHHHh-c--------CCchHHhHHHHHHHHhHHHHHHHHHHhcC
Confidence 2 3 3556668899999888555 4 46777766666666555544444444433
No 24
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.80 E-value=1.1e-08 Score=81.42 Aligned_cols=79 Identities=25% Similarity=0.419 Sum_probs=67.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 151 RWTRTRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 151 ~l~~~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
..+.++.......+.+...+++.++++|+++++++.++++.++.|+++.++++++++|++++.+++|++++++|++++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 47 NLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred CCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444468899999999999999999999999999999999999999999999999999999998754
No 25
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.75 E-value=1.4e-07 Score=83.39 Aligned_cols=132 Identities=19% Similarity=0.101 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCC
Q 042323 154 RTRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDS 233 (322)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~ 233 (322)
.++.+...+..|......|.+||.+++.+|.+.+..+-++.|+.+.+++. + +.+..+-+.+++.|+.++.-.+.
T Consensus 67 ~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~ 140 (292)
T COG5006 67 SKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQ 140 (292)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccC
Confidence 34455556777777888999999999999999999999999998887653 3 33455566777888886653332
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 042323 234 ENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALIL 305 (322)
Q Consensus 234 ~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~ 305 (322)
+.. .....|..++++++.||+.|.+..||.-+. .+...-++..+.+++++.+|+....
T Consensus 141 ~~~-------~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-------~~g~~g~a~gm~vAaviv~Pig~~~ 198 (292)
T COG5006 141 SVW-------SLDPVGVALALGAGACWALYIVLGQRAGRA-------EHGTAGVAVGMLVAALIVLPIGAAQ 198 (292)
T ss_pred CcC-------cCCHHHHHHHHHHhHHHHHHHHHcchhccc-------CCCchHHHHHHHHHHHHHhhhhhhh
Confidence 221 234589999999999999999999995432 2333445567888888888887643
No 26
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.72 E-value=4.2e-07 Score=84.21 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCc
Q 042323 158 AKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSS 237 (322)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~ 237 (322)
.....+-+++|++.|-+++.++.+.++++.++...+--+.|+++..+++++|++++||.++++.++|+.++-.+.....+
T Consensus 92 ~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~ 171 (345)
T KOG2234|consen 92 TLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG 171 (345)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 33455667789999999999999999999999999999999999999999999999999999999999988744332221
Q ss_pred c-cccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 042323 238 S-VSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILH 306 (322)
Q Consensus 238 ~-~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~ 306 (322)
. +.....+++.|....++++..-++..++..|.+++. +.+...-.--..++|.++.+...+..+
T Consensus 172 a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-----~~s~wi~NiqL~~~g~~f~~l~~~~~d 236 (345)
T KOG2234|consen 172 AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-----NVSLWIRNIQLYFFGILFNLLTILLQD 236 (345)
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 134456788999999999999999999999987654 333333333334455555444444433
No 27
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.65 E-value=8.3e-08 Score=89.01 Aligned_cols=138 Identities=22% Similarity=0.294 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCC
Q 042323 156 RVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSEN 235 (322)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~ 235 (322)
..++..+..++..+++.++-+.++.+.+++...++-+++|+++.++++++.+|+.+...++.++....||.+....+..
T Consensus 81 ~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~- 159 (316)
T KOG1441|consen 81 LPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELS- 159 (316)
T ss_pred cchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecccc-
Confidence 3455566667777888888899999999999999999999999999999999999999999999999999988765443
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCCCCCCcHHHHHHHHHHHHHHHHH-HHHHHHhc
Q 042323 236 SSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPD-DDGKNGDASMAQFLGFLGLFNLIIFL-PVALILHF 307 (322)
Q Consensus 236 ~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~-p~~~~~~~ 307 (322)
-++.|.+.++++.+..+...++.|+...+ ++ +++...+..++.-++.+.++ |+....+.
T Consensus 160 ---------fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~----~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~ 220 (316)
T KOG1441|consen 160 ---------FNLFGFISAMISNLAFALRNILSKKLLTSKGE----SLNSMNLLYYTAPISLIFLLIPFLDYVEG 220 (316)
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----ccCchHHHHHhhhHHHHHHhcchHhhhcc
Confidence 24799999999999999999999997742 22 68999999999999998888 77665443
No 28
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.65 E-value=2.1e-07 Score=84.13 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhh
Q 042323 160 VSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~ 226 (322)
....+.+...+++.+|++++++++++.++++.++.|++++++++++++|+++..+++|+++.++|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 3334444467889999999999999999999999999999999999999999999999999999873
No 29
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.62 E-value=3.5e-07 Score=72.44 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 162 LLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 162 l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
.....+++++.+++..+++..|.+.+..+.++.++++.++++++++||++.+|++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33335578899999999999999999999999999999999999999999999999999999998765
No 30
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.60 E-value=5.4e-08 Score=77.23 Aligned_cols=74 Identities=28% Similarity=0.338 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
.+....+.|+..+++..+||.|++...++..+-+-.++|+++.++++++++||++..+|+|+++..+|++++..
T Consensus 66 ~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 66 SWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 44555666777889999999999999999999999999999999999999999999999999999999998763
No 31
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.46 E-value=2.6e-06 Score=79.12 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
+........+...+++.+|+.++++.+++.++.+.++.|++..++++++++|+++..+++|.++.++|+.+...+.
T Consensus 214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 3334444445566788999999999999999999999999999999999999999999999999999998765543
No 32
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.46 E-value=1e-06 Score=83.84 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 167 FWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 167 ~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
.-.+++.++++++++.+++.+++..+..|++++++++++++|+++..+++|.++.+.|+.++..+.
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 345678899999999999999999999999999999999999999999999999999999887654
No 33
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.45 E-value=1.6e-06 Score=80.37 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 163 LICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 163 ~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
++.+...+++.+|++++++.+++.++++.++.|++..++++++++|+++..+++|.++.++|++......
T Consensus 214 lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 214 VAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 3333456788899999999999999999999999999999999999999999999999999998765443
No 34
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.41 E-value=6.2e-07 Score=81.30 Aligned_cols=151 Identities=23% Similarity=0.234 Sum_probs=114.2
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhh
Q 042323 147 AAKGRWTRTRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 147 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~ 226 (322)
|.+...+++...+.....++.-++.-.+-+++++|++.+..++.-+++++|+.+++.++.-||+++.-..-+++..+|++
T Consensus 73 r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glf 152 (349)
T KOG1443|consen 73 RARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLF 152 (349)
T ss_pred ccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhee
Confidence 33456777777777777777777777888999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 042323 227 IVSLGDSENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILH 306 (322)
Q Consensus 227 lv~~~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~ 306 (322)
+.+.-+.+. .+.|..+.++|+++-++--.+.+..+++.+. .+-+|........-.-.+.++|..+..+
T Consensus 153 lft~KsTqf----------~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~--~~~~P~~ti~~l~p~M~~~Ll~~~l~fE 220 (349)
T KOG1443|consen 153 LFTYKSTQF----------NIEGFFLVLAASLLSGLRWAFTQMLLRNQPS--AKRNPIDTIFHLQPWMSIGLLPLSLLFE 220 (349)
T ss_pred EEEecccce----------eehhHHHHHHHHHhhhhhHHHHHHHHhcCcc--ccCCCeeeHHHhhhHHHHHHHHHHHHHc
Confidence 888655432 3579999888888887777777666554431 1223343344444555566777777766
Q ss_pred ccC
Q 042323 307 FTK 309 (322)
Q Consensus 307 ~~~ 309 (322)
..+
T Consensus 221 G~~ 223 (349)
T KOG1443|consen 221 GLH 223 (349)
T ss_pred ccc
Confidence 443
No 35
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.39 E-value=3.3e-06 Score=78.26 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecC
Q 042323 162 LLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLG 231 (322)
Q Consensus 162 l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~ 231 (322)
+..++...+++.+|++++++++++.++++.+..|++..++++++++|+++..+++|.++.+.|+++....
T Consensus 219 ~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 219 LLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 3444556778999999999999999999999999999999999999999999999999999999876543
No 36
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.26 E-value=5.1e-06 Score=76.84 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 159 KVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
.......+...+++.+|++++++.+++.++++.++.|++++++++++++|+++..+++|.++.++|++++..
T Consensus 214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 214 ALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 333343444668889999999999999999999999999999999999999999999999999999987654
No 37
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.19 E-value=3.1e-06 Score=77.87 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhee
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIV 228 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv 228 (322)
.+......++...+++.++++++++.+++.++.+.+++|++..++++++++|+++..+++|.++.++|++++
T Consensus 210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 334445555667788999999999999999999999999999999999999999999999999999999753
No 38
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.10 E-value=2.5e-05 Score=63.48 Aligned_cols=71 Identities=25% Similarity=0.350 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHH--HhcCcccHHHHHHHHHHHHhhheeecC
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLL--FLGEKFTWVKLVSVLLCMAGTIIVSLG 231 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~--~l~er~s~~~~~gv~l~~~Gv~lv~~~ 231 (322)
...+.++++++.+++.++++..+++.+.-+.+..++++.+.++. +++|+++..+++|+++.++|++++..+
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 44555668899999999999999999999999999999888885 799999999999999999999988754
No 39
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.08 E-value=7.6e-05 Score=67.77 Aligned_cols=114 Identities=25% Similarity=0.294 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHh-hhHHHHHHHHHHHHhcCcccHHH----HHHHHHHHHhhheee
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILS-STSSLFTFLVSLLFLGEKFTWVK----LVSVLLCMAGTIIVS 229 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~-~t~Pvft~lls~~~l~er~s~~~----~~gv~l~~~Gv~lv~ 229 (322)
.+.+..+++.|++|.+++...+.|.++..+|.+.-+. ..+-+.+.++++++++|.-+..+ .+|+++.++|+++..
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4677888999999999999999999999999887775 66677799999999999776544 447888899999887
Q ss_pred cCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 042323 230 LGDSENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKK 270 (322)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~ 270 (322)
..+..+. ..+...+...|.+..+++.+.|..|.++.|..
T Consensus 122 ~~~~~~~--~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~ 160 (269)
T PF06800_consen 122 YQDKKSD--KSSSKSNMKKGILALLISTIGYWIYSVIPKAF 160 (269)
T ss_pred ccccccc--ccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 7665443 11112344579999999999999999998863
No 40
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.04 E-value=3.1e-05 Score=64.18 Aligned_cols=72 Identities=22% Similarity=0.429 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhe
Q 042323 156 RVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTII 227 (322)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~l 227 (322)
+.....+..+++.+..|...+..++++++-..+++...-.+++.++++++++|+++..+++|++++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 456666777888899999999999999999999999999999999999999999999999999999999975
No 41
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.99 E-value=2.9e-05 Score=72.04 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecC
Q 042323 168 WFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLG 231 (322)
Q Consensus 168 ~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~ 231 (322)
+...+.+++.++++++++.++++....|+++.++++++++|+++..+++|.++.++|+.+....
T Consensus 231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 4455677889999999999999999999999999999999999999999999999999876644
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.83 E-value=8.9e-05 Score=68.73 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
.+..++...+++.++++++++.+++.++++.+..|++..++++++++|+++..+++|.++.++|+.++..
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3334445567899999999999999999999999999999999999999999999999999888886653
No 43
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00015 Score=66.54 Aligned_cols=132 Identities=19% Similarity=0.236 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCccc
Q 042323 160 VSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSV 239 (322)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~ 239 (322)
..+...+++.+..+.-..+++|.++...+++-..+|+++++....++|.|++...|.++....+|.......|...
T Consensus 79 k~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf---- 154 (314)
T KOG1444|consen 79 KWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF---- 154 (314)
T ss_pred HHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee----
Confidence 3344455566666667899999999999999999999999999999999999999999999999998877666543
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 042323 240 SATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILH 306 (322)
Q Consensus 240 ~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~ 306 (322)
...|..|++...++-+.+.+..|+.++.. +.+-..+..|-.++....+....++.+
T Consensus 155 ------~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-----~l~~~~lv~yNnl~~L~~l~~~~~~~g 210 (314)
T KOG1444|consen 155 ------NLRGYSWALANCLTTAAFVVYVKKSVDSA-----NLNKFGLVFYNNLLSLPPLLILSFITG 210 (314)
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHHhhccc-----cccceeEEeehhHHHHHHHHHHHHHhc
Confidence 23599999999999999999999977644 234444455666665555554444443
No 44
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.80 E-value=0.00012 Score=58.49 Aligned_cols=71 Identities=18% Similarity=0.362 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHH-HHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 162 LLICPFWFLAQLTFNLSLKYTTVTSN-TILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 162 l~~~~~~~~~~~~~~~al~~~s~s~a-~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
++...++.++.+++..++++.|.+.+ ++.....-+.+.+++.++++|+++..+++|+.+.++|++++-..+
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 45566688899999999999999988 445678899999999999999999999999999999999775433
No 45
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.79 E-value=0.0003 Score=66.89 Aligned_cols=69 Identities=9% Similarity=0.228 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
.+..++.+++.|.+.+++++++++...++.....|+++.++++++++|+++..+++|.+++++|+.+..
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 334455566667777789999999999999999999999999999999999999999999999998643
No 46
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.78 E-value=0.00018 Score=56.59 Aligned_cols=68 Identities=12% Similarity=0.234 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHH-HHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhee
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSN-TILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIV 228 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a-~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv 228 (322)
.+....++.++.++...++++.|.+.+ ++.....-+.+.+.+.++++|++++.|++|+.+.++|++.+
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 455566688889999999999999987 67777888999999999999999999999999999999865
No 47
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.76 E-value=0.00017 Score=56.80 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHH-HHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSN-TILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a-~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
.+...+++.++.+++..+++..|.+.+ ++.....-+.+.++++++++|++++.+++|+.+.++|++++-.
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345566688889999999999999988 5557788899999999999999999999999999999998754
No 48
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.00017 Score=55.95 Aligned_cols=69 Identities=28% Similarity=0.354 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHH-HHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSN-TILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a-~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
.++..+++.++.++...|++++|.+.+ ++.....-+.+.+.++++++|+++..+++++.+.++|++.+-
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 455566678889999999999999987 778888899999999999999999999999999999998764
No 49
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.72 E-value=0.00028 Score=55.16 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHH-HHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSN-TILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a-~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
.+....++..+.++...+++..|.+.+ ++-....-+.+.+.+.++++|++++.+++|+.+.++|++.+-
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 344456678889999999999999977 667778899999999999999999999999999999999763
No 50
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=3.8e-05 Score=68.88 Aligned_cols=120 Identities=22% Similarity=0.310 Sum_probs=95.6
Q ss_pred HHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCcccccCCCCChHHHHHHH
Q 042323 175 FNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSVSATASNPLLGDILSL 254 (322)
Q Consensus 175 ~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~~~~~~~~~~G~ll~L 254 (322)
-+++++|.+++-..+=.+..-+|+.++.++++|+|-+..-..+..+.+.|-.+=...++.. +.-++.|.+++.
T Consensus 119 nnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~-------~~ls~~GvifGV 191 (347)
T KOG1442|consen 119 NNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGST-------GTLSWIGVIFGV 191 (347)
T ss_pred cceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecccccccc-------CccchhhhHHHH
Confidence 3688999999888888888899999999999999999888887777777765433222221 245679999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 042323 255 ASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILH 306 (322)
Q Consensus 255 ~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~ 306 (322)
.|.++-|+..+..||..+.. .-....++.|..+.+.++.+|...+.+
T Consensus 192 laSl~vAlnaiytkk~l~~v-----~~~iw~lt~ynnv~a~lLflpll~lng 238 (347)
T KOG1442|consen 192 LASLAVALNAIYTKKVLPPV-----GDCIWRLTAYNNVNALLLFLPLLILNG 238 (347)
T ss_pred HHHHHHHHHHHhhheecccc-----cCeehhhHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999866532 224577888999999999999988875
No 51
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.019 Score=52.64 Aligned_cols=138 Identities=19% Similarity=0.126 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCc
Q 042323 158 AKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSS 237 (322)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~ 237 (322)
++.....++.-.+...+.+.|++|++=-...+--++=-+=+++++.++.+.|.+..+.+..++.-.|+.+....+.+++
T Consensus 83 l~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s- 161 (327)
T KOG1581|consen 83 LYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDS- 161 (327)
T ss_pred hhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCC-
Confidence 4445555666677888999999999988888877877788899999999999999999999999999986655433321
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 042323 238 SVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPV 301 (322)
Q Consensus 238 ~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~ 301 (322)
.....+.++.+|..+....-++=++-+....++.++. +++...++.+..++.++.....
T Consensus 162 ~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-----k~s~~~mM~~vNLf~~i~~~~~ 220 (327)
T KOG1581|consen 162 SSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-----KVSSLHMMFGVNLFSAILNGTY 220 (327)
T ss_pred ccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-----CccHhHHHHHHHHHHHHHHHHh
Confidence 2334445778999999888888888777777766532 6888999989999888765444
No 52
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.53 E-value=0.00031 Score=65.03 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHH----HHHHHHHHhhheee
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLK-YTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKL----VSVLLCMAGTIIVS 229 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~-~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~----~gv~l~~~Gv~lv~ 229 (322)
.+..+..++.++++.+++.+|+.+++ +.+++.++++.+..|+...+++++++||+.+++++ +|.++.+.|+.++.
T Consensus 208 ~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 208 KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 33444556677779999999999999 99999999999999999999999999999999999 99999999998764
No 53
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.39 E-value=0.00097 Score=60.51 Aligned_cols=75 Identities=24% Similarity=0.263 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecC
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLG 231 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~ 231 (322)
.......+.+..++++.+++++++..+++.++.+..+.|++..++++++++|+++..+++|+++.+.|+.+....
T Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 214 WLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 333333333334478999999999999999999999999999999999999999999999999999999876543
No 54
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.33 E-value=0.0011 Score=61.76 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 167 FWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 167 ~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
.+.+++.+.+.|+.+.|++..+-+.+..-++.++++.+++|||+++..+.|++++++|++++..
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 3556777889999999999999999999999999999999999999999999999999986553
No 55
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.00082 Score=59.22 Aligned_cols=136 Identities=14% Similarity=0.247 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCccc
Q 042323 160 VSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSV 239 (322)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~ 239 (322)
......+-+.+++..-+.|++|.+--+..+--++-|+=++++++++.+++.++++...+++.++||++....+....
T Consensus 87 ~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~--- 163 (337)
T KOG1580|consen 87 MYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG--- 163 (337)
T ss_pred HHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC---
Confidence 34555566888888999999999988888889999999999999999999999999999999999998776543322
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 042323 240 SATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVAL 303 (322)
Q Consensus 240 ~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~ 303 (322)
+..+.....|.++.++|-..=++-.....+. +..+ .-+...++.++.+++.+.+-...+
T Consensus 164 g~e~~t~g~GElLL~lSL~mDGlTg~~Qdri-ra~y----q~~g~~MM~~~NlwStL~Lg~g~l 222 (337)
T KOG1580|consen 164 GAEDKTFGFGELLLILSLAMDGLTGSIQDRI-RASY----QRTGTSMMFYTNLWSTLYLGAGLL 222 (337)
T ss_pred CCcccccchHHHHHHHHHHhcccchhHHHHH-HHhh----ccCchhhHHHHHHHHHHHhhhhhe
Confidence 1112334589999999988888777776653 2222 123344555777777766544443
No 56
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.14 E-value=0.0018 Score=49.51 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHH-HHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 042323 163 LICPFWFLAQLTFNLSLKYTTVTSN-TILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLL 220 (322)
Q Consensus 163 ~~~~~~~~~~~~~~~al~~~s~s~a-~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l 220 (322)
....++.++.+++..++++.|.+.+ ++......+.+.+.+.++++|+++..|++|+.+
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 3444688888999999999999988 666779999999999999999999999999875
No 57
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.00 E-value=0.014 Score=55.14 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH-HhhhHHHHHHHHHHHHhcCcc-------cHHHHHHHHHHHHhhh
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTI-LSSTSSLFTFLVSLLFLGEKF-------TWVKLVSVLLCMAGTI 226 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~i-l~~t~Pvft~lls~~~l~er~-------s~~~~~gv~l~~~Gv~ 226 (322)
.+.+...++.|++|.++|..++.++++..++.+.- -..++-++..++..++++|-. ...-++|+++.++|++
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 34677789999999999999999999999998854 467888999999999988643 2457889999999999
Q ss_pred eeec----CCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHH
Q 042323 227 IVSL----GDSENSSSVSATASNPLLGDILSLASAGLYAVYIT 265 (322)
Q Consensus 227 lv~~----~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~v 265 (322)
+... .+.... .+...+.+...|.++++++.+.|+.|..
T Consensus 150 l~s~Ag~~k~~~~~-~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 150 IVGRAGQLKERKMG-IKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred HHHHhhhhcccccc-cccccccchHhHHHHHHHHHHHHHHHHH
Confidence 8876 322211 0001234556899999999999999994
No 58
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.55 E-value=0.015 Score=51.96 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhh
Q 042323 155 TRVAKVSLLICPF-WFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 155 ~~~~~~~l~~~~~-~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~ 226 (322)
.......+..+++ -.+.+.+-..+++..|....+++.+..|.+.++.++++++|++|..||+++...+++.+
T Consensus 206 p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 206 PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 3344444544444 44678888999999999999999999999999999999999999999999988887776
No 59
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.50 E-value=0.0098 Score=46.96 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHH-hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhee
Q 042323 162 LLICPFWFLAQLTFNLSLKYTTVTSNTIL-SSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIV 228 (322)
Q Consensus 162 l~~~~~~~~~~~~~~~al~~~s~s~a~il-~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv 228 (322)
.+...+...+...|++.+...+.|.+.-+ +++.=+||++.++++.+|..++++++|+++.+.|+.+.
T Consensus 45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 34445567788899999999999998877 48889999999988888888999999999999999864
No 60
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.44 E-value=0.014 Score=54.29 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
.....++.++....++.+.+.-.+..++...+++..+--+++.+++.++++++++..+|+|+++.+.|..+-..
T Consensus 224 ~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 224 VLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 44455566666667777777888999999999999999999999999999999999999999999999986543
No 61
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.0055 Score=56.50 Aligned_cols=69 Identities=14% Similarity=0.297 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 164 ICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 164 ~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
+.+.+.++...-|.|..+.|++..+-|.+++-++.++++..+++||++....+|.++|++|..+++...
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 344466777788999999999999999999999999999999999999999999999999999665443
No 62
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.08 E-value=0.027 Score=53.07 Aligned_cols=73 Identities=21% Similarity=0.424 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCC
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDS 233 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~ 233 (322)
.+..++..++.+.+.-..+++++++...+=.-|+.++.++++.+++++++++..++|.++.++|.++....+.
T Consensus 236 ~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 236 LVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 3344444566666777889999999888877888999999999999999999999999999999998765443
No 63
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.0078 Score=54.26 Aligned_cols=132 Identities=15% Similarity=0.184 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCccccc
Q 042323 162 LLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSVSA 241 (322)
Q Consensus 162 l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~~~ 241 (322)
...+.+......+-+-++.|++--...+.-++--+=+++.+.++-+.|-.+....+..+..+|+++.+..|....
T Consensus 110 ~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s----- 184 (367)
T KOG1582|consen 110 VILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS----- 184 (367)
T ss_pred hhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC-----
Confidence 334444445556667778888766666667777777788899999999999999999999999999888776543
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 042323 242 TASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALI 304 (322)
Q Consensus 242 ~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~ 304 (322)
.+-+..|+.+.-+|-++=|+-.-+..+..+..+ -+...+..+...+|.++++..+..
T Consensus 185 -PNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~-----~ss~EmvfySy~iG~vflf~~mvl 241 (367)
T KOG1582|consen 185 -PNFNLIGVMMISGALLADAVIGNVQEKAMKMNP-----ASSSEMVFYSYGIGFVFLFAPMVL 241 (367)
T ss_pred -CCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC-----CCcceEEEeeecccHHHHHHHHHh
Confidence 233468999888888888877777666555432 222334445555555555444433
No 64
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.69 E-value=0.023 Score=49.86 Aligned_cols=145 Identities=19% Similarity=0.273 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCC
Q 042323 154 RTRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDS 233 (322)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~ 233 (322)
.++|+...++.... -+.-.-+++|.++...++.-+++-+.++.....+++.|++..+....++.+...+.-..+|.
T Consensus 68 aK~WfpiSfLLv~M----Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~ 143 (309)
T COG5070 68 AKKWFPISFLLVVM----IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ 143 (309)
T ss_pred hhhhcCHHHHHHHH----HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence 34455454443333 33446889999999999999999999999999999999999999999888888776666665
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 042323 234 ENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFTKL 310 (322)
Q Consensus 234 ~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~ 310 (322)
+.. ......-..|.+|+..-.+.-|.|.+..|+.++-.+ ..-...+.|-.+.+..+++.+.++++-...
T Consensus 144 q~~---~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltN-----f~d~dtmfYnNllslPiL~~~s~~~edws~ 212 (309)
T COG5070 144 QAS---AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTN-----FKDFDTMFYNNLLSLPILLSFSFLFEDWSP 212 (309)
T ss_pred hHH---HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccc-----cchhhHHHHhhhHHHHHHHHHHHHhccCCc
Confidence 322 000111235889999999999999999998765332 122334557777777777766666654333
No 65
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.53 E-value=0.033 Score=50.75 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHH
Q 042323 156 RVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVL 219 (322)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~ 219 (322)
|..+.-++.|++|.++|.+++.+.+....+.+-.+..+.++...+.+.+++||+-+++++..++
T Consensus 193 k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 193 KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 3355678889999999999999999999999999999999999999999999998887765443
No 66
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.35 E-value=0.0026 Score=56.48 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHh-hhHHHHHHHHHHHHhcCcccHHH----HHHHHHHHHhhheee
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILS-STSSLFTFLVSLLFLGEKFTWVK----LVSVLLCMAGTIIVS 229 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~-~t~Pvft~lls~~~l~er~s~~~----~~gv~l~~~Gv~lv~ 229 (322)
.+.+...++.+++|..++...+-|+++..++.+.-+. .++-+-+.+++++.++|-.+..+ .+++++.++|+.+-.
T Consensus 56 ~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs 135 (288)
T COG4975 56 LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS 135 (288)
T ss_pred hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence 4467788899999999999999999999999887764 56677888999999999877644 457778888998887
Q ss_pred cCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 042323 230 LGDSENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKK 270 (322)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~ 270 (322)
..+..+. +.+...+.-.|....+.|.+.|-.|.++.+..
T Consensus 136 ~~~~~nk--~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f 174 (288)
T COG4975 136 KQDRNNK--EEENPSNLKKGIVILLISTLGYVGYVVLFQLF 174 (288)
T ss_pred eeccccc--cccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence 7665332 11222334468888888999999998887764
No 67
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.33 E-value=0.08 Score=48.38 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
...+.+....|..-.+...+|..|-+.++.+...++++..|.+..+++.++++|+++..|..+-+..-+|+++...
T Consensus 208 ~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 208 NSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777889999999999999999999999999999999999999999999999999988888886653
No 68
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.94 E-value=0.04 Score=48.65 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhe
Q 042323 167 FWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTII 227 (322)
Q Consensus 167 ~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~l 227 (322)
...+...+..+.++|.++..-++...+.++++.+++.++++++++..+++|+.+.+.|+.+
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3455666788999999999999999999999999999999999999999999999998764
No 69
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=94.93 E-value=0.094 Score=43.06 Aligned_cols=62 Identities=31% Similarity=0.374 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 042323 249 GDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFTKL 310 (322)
Q Consensus 249 G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~ 310 (322)
|.+++++|.++.|++.++.|+..++......+.++..+..+....+.+++.|..++.+..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~ 62 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQL 62 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 67899999999999999999977763111227899999999999999999999998876653
No 70
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.31 E-value=0.19 Score=47.08 Aligned_cols=113 Identities=22% Similarity=0.305 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHhhhHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHhhhe
Q 042323 156 RVAKVSLLICPFWFLAQLTFNLSLKYTTVTSN-TILSSTSSLFTFLVSLLFLG-------EKFTWVKLVSVLLCMAGTII 227 (322)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a-~il~~t~Pvft~lls~~~l~-------er~s~~~~~gv~l~~~Gv~l 227 (322)
.......+.+++|++....|-.+++|+..+.. ++...+.-++-.++-.++.+ .+-....++|++++++|+++
T Consensus 71 ~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai 150 (344)
T PF06379_consen 71 STLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAI 150 (344)
T ss_pred hHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHH
Confidence 35667788999999999999999999998866 55566666666666555533 23345789999999999998
Q ss_pred eecCCCCCC--cccccCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 042323 228 VSLGDSENS--SSVSATASNPLLGDILSLASAGLYAVYITLIR 268 (322)
Q Consensus 228 v~~~~~~~~--~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k 268 (322)
+...+.... .+.+..+.+--.|.++++.|.+..|.+++-..
T Consensus 151 ~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 151 CGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred HhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 865432111 01122234456899999999999999988653
No 71
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=93.85 E-value=0.038 Score=50.05 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=86.1
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhee
Q 042323 150 GRWTRTRVAKVSLLICPFWFLAQLTFNLSLKY-TTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIV 228 (322)
Q Consensus 150 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~al~~-~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv 228 (322)
++.+.|+. +....+++..+.+-++|+++ ++...--++-+-+++-+++++++++++|-+.+|+.++++.-+|+++-
T Consensus 60 ~kiplk~Y----~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIc 135 (330)
T KOG1583|consen 60 PKIPLKDY----AITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIIC 135 (330)
T ss_pred CCCchhhh----heehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeE
Confidence 44455543 33344566777788899987 45555566778889999999999999999999999999999999987
Q ss_pred ecCCCCCCcc-------cccCCC--CChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHH
Q 042323 229 SLGDSENSSS-------VSATAS--NPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFN 294 (322)
Q Consensus 229 ~~~~~~~~~~-------~~~~~~--~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (322)
+..+..+..+ ++.... -..+|+.+...|-+.-|.-.++.+...++.. -++...++|.-+..
T Consensus 136 Tl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG-----Kh~~EalFytH~Ls 205 (330)
T KOG1583|consen 136 TLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG-----KHWKEALFYTHFLS 205 (330)
T ss_pred EeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CChHHHHHHHHHhc
Confidence 6544332211 111111 1246776666666666655555443322211 23455555655543
No 72
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=93.17 E-value=0.29 Score=44.00 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHH
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLF 205 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~ 205 (322)
.+...+..++...+++.++++|+++.+++.++++.++.|+++.+++.+.
T Consensus 207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555567889999999999999999999999999999999764
No 73
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=92.70 E-value=0.71 Score=37.83 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHh-hhHHHHHHHHHHH----HhcCcccHHHHHHHHHHHHhhhe
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSNTILS-STSSLFTFLVSLL----FLGEKFTWVKLVSVLLCMAGTII 227 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a~il~-~t~Pvft~lls~~----~l~er~s~~~~~gv~l~~~Gv~l 227 (322)
..++|++....-.+..+......++.++.+. .-+-+...++..+ .-+++++..|++|+++.++|+++
T Consensus 67 ~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 67 AYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 4456666666667778888999988776654 5556666677775 35688999999999999999874
No 74
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.56 E-value=0.21 Score=44.42 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhe
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTII 227 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~l 227 (322)
.++-..+.++...+++++.+.-..+-++-.-+++..|--+|+.+.++++++..++.+||+|..+.+.|...
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 44555566666777888888888888887888888999999999999999999999999999999998875
No 75
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=91.83 E-value=0.3 Score=46.23 Aligned_cols=148 Identities=11% Similarity=0.115 Sum_probs=104.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHhhCC-C---cceEEEEeccceehhhhhhHhhhhHHHhhcccceeecccCcCc
Q 042323 5 VWKWGLGLIYIVAVAIIWIAASFVVQSVVDAG-V---SPFLVTYICNSLFVVYIPIAEIGRYLVDTYGSVLFWKNRKSGT 80 (322)
Q Consensus 5 ~~~~~lG~~~~~~v~v~Wv~ss~l~~~l~~~~-~---~Pf~~t~~~~s~f~l~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (322)
..|-++|-++-++.+++..+-+.+.++-.++. . -|-|.-|+.---+.++.|...+..++. .++-
T Consensus 242 a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~----------~e~F-- 309 (416)
T KOG2765|consen 242 ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG----------EERF-- 309 (416)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc----------cCcc--
Confidence 45678999999999999999999999866443 2 466777766555555565544322211 1000
Q ss_pred ccccCchhhhhhhhccCCCCCCCCCCCccccccccccccccccCCCCcccccccccCCchhhhhhhhhcCCCchhhHHHH
Q 042323 81 LQELGDSEKAILLEESNVGVKGEESPQSLIVQEGEIGQQEKSIDSGSEFVSDEFQSSLPIVEAEESAAKGRWTRTRVAKV 160 (322)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (322)
++. +..+....
T Consensus 310 ----------~lP-----------------------------------------------------------~~~q~~~v 320 (416)
T KOG2765|consen 310 ----------ELP-----------------------------------------------------------SSTQFSLV 320 (416)
T ss_pred ----------cCC-----------------------------------------------------------CCceeEee
Confidence 000 00111223
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCC
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDS 233 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~ 233 (322)
.+..+++-+++.++|..|.-.+++-.+++=++.+--..++.-.++.+.+++...++|.+..++|-+++...+.
T Consensus 321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 3445666788999999999999999999877776667788888888999999999999999999998876654
No 76
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=91.11 E-value=0.04 Score=49.76 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
++.+++....|+..++++.+...|+|.--++-.++..++..+|..+.-.+++++-|+++.|.|.++.+...+.+.
T Consensus 250 gkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 250 GKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred ccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 445566667788888999999999999999999999999999999999999999999999988776655555443
No 77
>PRK13499 rhamnose-proton symporter; Provisional
Probab=90.83 E-value=0.86 Score=43.18 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH---Hh-hhHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHh
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTI---LS-STSSLFTFLVSLLFLGEKFT------WVKLVSVLLCMAG 224 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~i---l~-~t~Pvft~lls~~~l~er~s------~~~~~gv~l~~~G 224 (322)
.+....+.+.++.|.+.+.+|..|-...+.+.+.+ +. .+..++..+-+. ++||+=+ +.-++|+++.++|
T Consensus 257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g 335 (345)
T PRK13499 257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA 335 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence 34555668889999999999999998886665544 55 666677777676 5998766 5668888888888
Q ss_pred hheeecCC
Q 042323 225 TIIVSLGD 232 (322)
Q Consensus 225 v~lv~~~~ 232 (322)
++++..++
T Consensus 336 ~~lig~~~ 343 (345)
T PRK13499 336 ANIVGLGN 343 (345)
T ss_pred HHHHhhcc
Confidence 88776543
No 78
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=88.31 E-value=11 Score=33.11 Aligned_cols=87 Identities=25% Similarity=0.303 Sum_probs=50.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCC-----------------CCcccccCCCCChH
Q 042323 186 SNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSE-----------------NSSSVSATASNPLL 248 (322)
Q Consensus 186 ~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~-----------------~~~~~~~~~~~~~~ 248 (322)
......+..++++++..+.+.++|.+..|+++.++...|++.-...+.+ ...+.....++.+.
T Consensus 6 a~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~ 85 (222)
T TIGR00803 6 IHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVV 85 (222)
T ss_pred chHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHH
Confidence 3445566667777777776677776677777777766666532211110 00000111234567
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCC
Q 042323 249 GDILSLASAGLYAVYITLIRKKLP 272 (322)
Q Consensus 249 G~ll~L~aa~~~A~~~vl~k~~~~ 272 (322)
|..+.+.+.++-+.-.++.++..+
T Consensus 86 g~~~~l~a~~~~~~~~~y~e~~~k 109 (222)
T TIGR00803 86 GLSAVLSALLSSGFAGVYFEKILK 109 (222)
T ss_pred HHHHHHHHHHHHhhhHHHHHHccc
Confidence 777778888877777888777544
No 79
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=87.83 E-value=0.17 Score=45.28 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=57.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHH
Q 042323 153 TRTRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVL 219 (322)
Q Consensus 153 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~ 219 (322)
+..|..++-++-++.|..+|.++++|-+....+++-.+..+..+...+-+.+++|||-+++++..++
T Consensus 204 ~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~ 270 (288)
T COG4975 204 RFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVI 270 (288)
T ss_pred chHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhh
Confidence 3455566678889999999999999999998888888888889999999999999999998876554
No 80
>PRK02237 hypothetical protein; Provisional
Probab=85.23 E-value=6.3 Score=30.71 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=33.8
Q ss_pred HHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecC
Q 042323 188 TILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLG 231 (322)
Q Consensus 188 ~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~ 231 (322)
+.--....+...+..+.+-+.||+...++|..+|++|+.++...
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 33344445555677788889999999999999999999877543
No 81
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=84.41 E-value=1.3 Score=40.96 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhe
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTII 227 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~l 227 (322)
++.++-.++.+.+..+++.+-++-++.-.+-.-+.|+.|--++..+++.+.++.+++..+|+|+.+.|.|+.+
T Consensus 238 p~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 238 PDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 3455556666777778888888888877777778889999999999999999999999999999999999874
No 82
>PRK10666 ammonium transporter; Provisional
Probab=82.21 E-value=52 Score=32.30 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc------hHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCC
Q 042323 160 VSLLICPFWFLAQLTFNLSLKYTT------VTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDS 233 (322)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~al~~~s------~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~ 233 (322)
...++.++.-..++.|+-+..... +...+.+....-..+.++...+.+.|++.....--++ +|.+-++....
T Consensus 222 ~~~lGt~lLw~GW~gFN~Gs~~~~~~~a~~a~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~L--aGLVaITa~a~ 299 (428)
T PRK10666 222 MVFTGTAILYIGWFGFNAGSAGAANEIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAI--AGLVGVTPACG 299 (428)
T ss_pred HHHHHHHHHHHHHHhccchhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHh--hhhhhcccccc
Confidence 344555554455555655544321 1222333333333444433344556777655433222 55554443222
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 042323 234 ENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPV 301 (322)
Q Consensus 234 ~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~ 301 (322)
- -.++...+..+++++.+-......|++.+=+| .++...+=+..++++.+..-.+
T Consensus 300 ~---------v~p~~A~iiG~vag~v~~~~~~~l~~~~~iDD----~~~a~~vHgv~Gi~G~l~~glf 354 (428)
T PRK10666 300 Y---------VGVGGALIIGVVAGLAGLWGVTMLKRWLRVDD----PCDVFGVHGVCGIVGCILTGIF 354 (428)
T ss_pred c---------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CcCccHhhhHhHHHHHHHHHHh
Confidence 1 23455666666666655443333343233222 4666666666677776554433
No 83
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=82.15 E-value=13 Score=33.43 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHH
Q 042323 168 WFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVL 219 (322)
Q Consensus 168 ~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~ 219 (322)
..++-.+...-++|.+.-.=..-.+.+-+++.+++.++++.+++..-.+|..
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 4444555667789999888888888899999999999999999998877754
No 84
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.10 E-value=4.6 Score=37.57 Aligned_cols=79 Identities=29% Similarity=0.497 Sum_probs=60.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 152 WTRTRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 152 l~~~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
+.....+-...+.|++-++-+++-++..+..|+...++...-.-.-+.+...++.++++++..++|+.+++.|-++-..
T Consensus 222 ~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 222 WSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 4444445556677777777888889999999998888888666677777777777788899999999999888876443
No 85
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=80.69 E-value=6.2 Score=30.69 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=38.3
Q ss_pred hcccchHHH-HHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecC
Q 042323 179 LKYTTVTSN-TILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLG 231 (322)
Q Consensus 179 l~~~s~s~a-~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~ 231 (322)
++-.+.+.+ +.--...-+...+..+.+-++||++..++|..+|++|+.++...
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 443333333 33444455666777788889999999999999999999987654
No 86
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=80.54 E-value=26 Score=32.62 Aligned_cols=67 Identities=19% Similarity=0.349 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhee
Q 042323 162 LLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIV 228 (322)
Q Consensus 162 l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv 228 (322)
.+++..-++....-+.=+..|++-..++..---=+.+.+++.++.+++++...|.|..++..|+.+=
T Consensus 247 ~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 247 SLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3334443333344455555666555555555556788999999999999999999999999999865
No 87
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=80.42 E-value=0.6 Score=43.71 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 163 LICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 163 ~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
+..++.+..|..-|..+..+++-+-++....==+++.+.++++++++++..+.+|.+++++|+++=..
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 33366777888889999999998888888777777888898999999999999999999999986543
No 88
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=79.31 E-value=12 Score=28.90 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 192 STSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 192 ~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
....+...+..++.=+.+|++..|+|..+|++|+.++..+.
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 33344555566667788999999999999999998777653
No 89
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=79.23 E-value=0.92 Score=31.89 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=33.9
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHhhCC--CcceEEEE
Q 042323 6 WKWGLGLIYIVAVAIIWIAASFVVQSVVDAG--VSPFLVTY 44 (322)
Q Consensus 6 ~~~~lG~~~~~~v~v~Wv~ss~l~~~l~~~~--~~Pf~~t~ 44 (322)
+++.+++++.++.+++|...+...+++-++| +.||+...
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~EpFfLiP 42 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLHEPFFLIP 42 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceECCCCeEecccHHHH
Confidence 5778999999999999999999999999988 58975443
No 90
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=78.66 E-value=2.6 Score=32.54 Aligned_cols=44 Identities=25% Similarity=0.154 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 042323 258 GLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFTK 309 (322)
Q Consensus 258 ~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~ 309 (322)
++||.+.++.|+..+ +.++....++..+++.+ +++...+.+..+
T Consensus 1 ~~~a~~~~~~k~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 44 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK-------KISPLSITFWRFLIAGI-LLILLLILGRKP 44 (126)
T ss_pred ceeeeHHHHHHHHhc-------cCCHHHHHHHHHHHHHH-HHHHHHhhcccc
Confidence 468899999998766 47889999999998887 666666655443
No 91
>PF11742 DUF3302: Protein of unknown function (DUF3302); InterPro: IPR011223 This is a family of uncharacterised bacterial proteins, restricted to the Gammaproteobacteria.
Probab=74.54 E-value=23 Score=26.00 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccCcccccCc
Q 042323 248 LGDILSLASAGLYAVYITLI--RKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILHFTKLEPFYRL 316 (322)
Q Consensus 248 ~G~ll~L~aa~~~A~~~vl~--k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~ 316 (322)
+++++.+..++.|++..+-. .+..++.+ .+..+...+.+|.+++..-.+||++.+.-+...+...+.
T Consensus 6 ~~vli~~~~~~~~~~~~lh~lP~~iA~kr~--Hpq~eaI~v~gwisLft~~~lWp~a~IwA~~d~~~~g~~ 74 (78)
T PF11742_consen 6 LVVLIFVVIVLIYGFWKLHDLPGKIAHKRN--HPQAEAIHVLGWISLFTLHVLWPFAWIWAYLDRPDRGWG 74 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCC
Confidence 45666777777777655421 11111110 115678888999998887788999999877777666554
No 92
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=72.77 E-value=1.2 Score=40.72 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHhcccchHHHHHHhhhHHHHHHHHHH-HHhcCc-ccHHHHHHHHHHHHhhh
Q 042323 177 LSLKYTTVTSNTILSSTSSLFTFLVSL-LFLGEK-FTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 177 ~al~~~s~s~a~il~~t~Pvft~lls~-~~l~er-~s~~~~~gv~l~~~Gv~ 226 (322)
+-++-.+-+..+++.+...+++.++-. +++|+| +-..-.+++++.++-..
T Consensus 42 iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lL 93 (381)
T PF05297_consen 42 IIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLL 93 (381)
T ss_dssp ----------------------------------------------------
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Confidence 334444445555666655555444433 334544 45666666666554443
No 93
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=71.13 E-value=38 Score=30.77 Aligned_cols=114 Identities=16% Similarity=0.224 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHH-HHHH-Hhc---Ccc--cHHHHHHHHHHHHhhheee
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFL-VSLL-FLG---EKF--TWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~l-ls~~-~l~---er~--s~~~~~gv~l~~~Gv~lv~ 229 (322)
....+.++|.+|..+|.+-.-.++.+..+.+.++-++.-+.+-- .+.+ +++ |.+ .....+|++++++|..+..
T Consensus 54 f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 54 FYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred ceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence 34568899999999999999999999999998888775444443 3322 232 322 4678899999999988655
Q ss_pred cCCCCC--C----c-------------cc-----c-c------CCCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 042323 230 LGDSEN--S----S-------------SV-----S-A------TASNPLLGDILSLASAGLYAVYITLIRKK 270 (322)
Q Consensus 230 ~~~~~~--~----~-------------~~-----~-~------~~~~~~~G~ll~L~aa~~~A~~~vl~k~~ 270 (322)
.-+... . + ++ + + ...+.+.|.++++.+++.|+...+=....
T Consensus 134 fik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi 205 (254)
T PF07857_consen 134 FIKSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYI 205 (254)
T ss_pred eecCCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHH
Confidence 422111 0 0 00 0 0 01146799999999999999987766554
No 94
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=70.65 E-value=58 Score=34.39 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=24.1
Q ss_pred cchHHHHHHhhhHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHhhh
Q 042323 182 TTVTSNTILSSTSSLFTFLVSLLF--LGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 182 ~s~s~a~il~~t~Pvft~lls~~~--l~er~s~~~~~gv~l~~~Gv~ 226 (322)
.+.+..+.+.+...+..++.+.+. +-+|+.+++.+-+.+.+.++.
T Consensus 199 ls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~ 245 (742)
T TIGR01299 199 IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFF 245 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 344555556555544433333322 348888887766655544443
No 95
>COG2510 Predicted membrane protein [Function unknown]
Probab=69.78 E-value=23 Score=28.66 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 042323 249 GDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVALILH 306 (322)
Q Consensus 249 G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~ 306 (322)
..++++++|+++++-.++.|--++ .+||...+..-.+...++++.+.+..+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-------~vdp~~At~IRtiVi~~~l~~v~~~~g 54 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-------GVDPDFATTIRTIVILIFLLIVLLVTG 54 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-------ccCccHHHHHHHHHHHHHHHHHHHhcC
Confidence 458999999999999999987665 466776666667666666666665554
No 96
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=64.61 E-value=1.4e+02 Score=28.99 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=36.5
Q ss_pred hcCcccHHHHHHHHHHHHhhheeecCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHH
Q 042323 206 LGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQ 285 (322)
Q Consensus 206 l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~ 285 (322)
.+.|++.....-- +++|.+-++..... -+++...++.+++++.+-....+.+| .+=+| .++...
T Consensus 264 ~~gk~~~~~~~nG--~LAGLVaITa~~~~---------v~p~~A~iiG~iag~v~~~~~~~~~~-~~iDD----~~~~~~ 327 (404)
T TIGR03644 264 LFGKADLTMVLNG--ALAGLVAITAEPLT---------PSPLAATLIGAVGGVIVVFSIVLLDK-LKIDD----PVGAIS 327 (404)
T ss_pred HcCCCCHHHHHHH--HHhhhhhhccccCC---------CCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CcCchH
Confidence 3456665543322 33555544422221 23555666666655555444444455 23222 455555
Q ss_pred HHHHHHHHHHHH
Q 042323 286 FLGFLGLFNLII 297 (322)
Q Consensus 286 ~~~~~~l~~~l~ 297 (322)
+=+..++++.+.
T Consensus 328 vHg~~Gi~G~i~ 339 (404)
T TIGR03644 328 VHGVAGIWGTLV 339 (404)
T ss_pred hhhHHHHHHHHH
Confidence 555555555543
No 97
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=64.46 E-value=1.4e+02 Score=28.84 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcc--cchHH-----HHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhee
Q 042323 156 RVAKVSLLICPFWFLAQLTFNLSLKY--TTVTS-----NTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIV 228 (322)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~al~~--~s~s~-----a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv 228 (322)
+......++.++....+..|+-|-.. ...+. .+.+....-.++.++...+.+.|++.....-- +++|.+-+
T Consensus 188 ~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG--~laGlVai 265 (399)
T PF00909_consen 188 HSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLSGKWSMVGICNG--ALAGLVAI 265 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSS--HHHHHHH--HHHHHHHH
T ss_pred CcHHHhhhhHHHHHHHhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccccccchhhhhhh--hhhhhhhe
Confidence 34445566666666677777744332 22222 24444444444444444455566666544322 23444444
Q ss_pred ecCCCCCCcccccCCCCChHHHHHHHHH-HHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 042323 229 SLGDSENSSSVSATASNPLLGDILSLAS-AGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFL 299 (322)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~G~ll~L~a-a~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 299 (322)
+.+... -+++...+..+++ .+++..+..+.+|.--| | ..+...+-+..++++.+...
T Consensus 266 ta~~~~---------v~p~~A~~iG~iag~i~~~~~~~l~~~~~iD-D----~~~~~~vHg~~Gi~G~i~~g 323 (399)
T PF00909_consen 266 TAGAGY---------VTPWGALLIGAIAGLISYFGVSWLLKRLKID-D----PVGAFAVHGVGGIWGTILTG 323 (399)
T ss_dssp TTTTTT---------S-HHHHHHHHHHHHHHHHHHHHHHHHHHTS--H----TTGHHHHCHHHHHHHHHHHH
T ss_pred ecccCC---------CcHHHHHHhhhhHhhhhhhheecccceeEec-c----ccceEeeeeccHHHHHHHHH
Confidence 322221 2355566666666 55566665455553222 2 46777776666777665543
No 98
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=62.14 E-value=48 Score=30.52 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=44.2
Q ss_pred cccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 180 KYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 180 ~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
+.-.+..++.+...--..|.+++++++.++++.....+.++.+.|+.+=..++
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 34456666777777788999999999999999999999999999999766655
No 99
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=62.13 E-value=13 Score=28.91 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH-HhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 163 LICPFWFLAQLTFNLSLKYTTVTSNTI-LSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 163 ~~~~~~~~~~~~~~~al~~~s~s~a~i-l~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
+-..+--.+..+|+.-++.++.+.+.- -.++.-.|+.+++..+..|-..++.++|..+..+|+.+..
T Consensus 57 iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 57 IPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 333344456778999999998887654 4566778999999886666677888899999999987643
No 100
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=61.52 E-value=18 Score=32.16 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhh
Q 042323 161 SLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 161 ~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~ 226 (322)
.++.++.-++..++--+.++-++.+.-+++.++.-.-..+-+.+++.|+.+..++.++++++..-+
T Consensus 227 m~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~ 292 (309)
T COG5070 227 MFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGA 292 (309)
T ss_pred HHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHH
Confidence 344555555566677788888888888888888877777777777777777777777777665444
No 101
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.32 E-value=46 Score=27.67 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchH-HHHHHhhhHHHHHHHHHHHHh----cCcccHHHHHHHHHHHHhhhee
Q 042323 160 VSLLICPFWFLAQLTFNLSLKYTTVT-SNTILSSTSSLFTFLVSLLFL----GEKFTWVKLVSVLLCMAGTIIV 228 (322)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~al~~~s~s-~a~il~~t~Pvft~lls~~~l----~er~s~~~~~gv~l~~~Gv~lv 228 (322)
....+|.+....-..-........++ ..+++.+-+-+..+++..+=. +.+++..+++|+++.++|+.++
T Consensus 71 W~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 71 WAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 34444443332222233444445444 445666777777777766543 3689999999999999995544
No 102
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=52.62 E-value=2.1e+02 Score=27.09 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=27.3
Q ss_pred cchHHHHHHhhhHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHhhh
Q 042323 182 TTVTSNTILSSTSSLFTFLVSLLF--LGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 182 ~s~s~a~il~~t~Pvft~lls~~~--l~er~s~~~~~gv~l~~~Gv~ 226 (322)
.+.+..+.+.+...+...+...+. +-||+++++.+-....+.++.
T Consensus 52 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~ 98 (394)
T PRK10213 52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLS 98 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Confidence 456666666655555555544333 358998888776655555554
No 103
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=51.95 E-value=1.1e+02 Score=23.79 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=33.5
Q ss_pred HhcccchHHHHHHhhhH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 178 SLKYTTVTSNTILSSTS-SLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 178 al~~~s~s~a~il~~t~-Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
|.+.-+.+.--+++=.. -..-..++.+++||++++....|.++.+.++.++.
T Consensus 55 G~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 55 GYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred hccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 33344455444444222 22334577889999999999999888877776653
No 104
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=50.60 E-value=27 Score=28.75 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=20.0
Q ss_pred HhcccchHHHHHHhhhHHHHHHHHHHHH
Q 042323 178 SLKYTTVTSNTILSSTSSLFTFLVSLLF 205 (322)
Q Consensus 178 al~~~s~s~a~il~~t~Pvft~lls~~~ 205 (322)
++.--+.-.+++|.|..|+++++++.++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567788888899988887764
No 105
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.14 E-value=77 Score=24.35 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=26.3
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 199 FLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 199 ~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
..++.+.+||++++..+.|.++...|+.++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999988888887664
No 106
>TIGR00895 2A0115 benzoate transport.
Probab=44.18 E-value=2.3e+02 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=22.1
Q ss_pred chHHHHHHhhhHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHhh
Q 042323 183 TVTSNTILSSTSSLFTFLVSLLF--LGEKFTWVKLVSVLLCMAGT 225 (322)
Q Consensus 183 s~s~a~il~~t~Pvft~lls~~~--l~er~s~~~~~gv~l~~~Gv 225 (322)
+....+.+.....+...+.+.+. +.||.++++++.+...+.++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 50 DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV 94 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence 45555555554443333333222 35788877766554444443
No 107
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=42.38 E-value=3.3e+02 Score=26.55 Aligned_cols=82 Identities=22% Similarity=0.207 Sum_probs=39.2
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHhhheeecCCCCCCcccccCCCCChHHHHHH-HHHHHHHHHHHHHHhhhCCCCCCCC
Q 042323 200 LVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDSENSSSVSATASNPLLGDILS-LASAGLYAVYITLIRKKLPDDDGKN 278 (322)
Q Consensus 200 lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~~~~~~~~~~~~~~~~G~ll~-L~aa~~~A~~~vl~k~~~~~~~~~~ 278 (322)
+..++. +.|++..-... =+++|.+-++-.... -+++-..+.. +.+.+||-....+-|| .+=+|
T Consensus 246 ~~e~~~-~~Kp~~lg~~s--G~vAGLVaITpaag~---------V~p~~A~iiGii~g~i~~~a~~~lk~~-l~~DD--- 309 (409)
T COG0004 246 LIEWLR-NGKPSLLGAAS--GAVAGLVAITPAAGF---------VSPWGALIIGLIAGVICYFAVKLLKKK-LGVDD--- 309 (409)
T ss_pred HHHHHH-cCCCchhhhhh--HHHhHHHhcCCcccc---------cCcHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC---
Confidence 334443 66777643322 123455545432221 1233344444 4555666666666554 33222
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 042323 279 GDASMAQFLGFLGLFNLIIF 298 (322)
Q Consensus 279 ~~~~~~~~~~~~~l~~~l~~ 298 (322)
.++...+=+..++++++..
T Consensus 310 -~ld~f~vHGvgGi~G~i~~ 328 (409)
T COG0004 310 -ALDVFGVHGVGGIVGAILT 328 (409)
T ss_pred -cccceeccchhhHHHHHHH
Confidence 4555555555566665544
No 108
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=41.70 E-value=38 Score=28.19 Aligned_cols=28 Identities=7% Similarity=0.196 Sum_probs=18.9
Q ss_pred HhcccchHHHHHHhhhHHHHHHHHHHHH
Q 042323 178 SLKYTTVTSNTILSSTSSLFTFLVSLLF 205 (322)
Q Consensus 178 al~~~s~s~a~il~~t~Pvft~lls~~~ 205 (322)
++..-+.-.++++.|..|++.++++..+
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555567778888888887776553
No 109
>PRK10263 DNA translocase FtsK; Provisional
Probab=40.44 E-value=2.8e+02 Score=31.36 Aligned_cols=18 Identities=6% Similarity=-0.132 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHHhcC
Q 042323 191 SSTSSLFTFLVSLLFLGE 208 (322)
Q Consensus 191 ~~t~Pvft~lls~~~l~e 208 (322)
.+..|++.++.++++++.
T Consensus 83 AYLLP~LL~~~a~~l~R~ 100 (1355)
T PRK10263 83 AYTIPVIIVGGCWFAWRH 100 (1355)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334455555555655554
No 110
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=39.92 E-value=2.5e+02 Score=26.65 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHhhhHHHHHHHHHHHHhcC------cccHHHHHHHHHHHH
Q 042323 154 RTRVAKVSLLICPFWFLAQLTFNLSLKYTT----VTSNTILSSTSSLFTFLVSLLFLGE------KFTWVKLVSVLLCMA 223 (322)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~s----~s~a~il~~t~Pvft~lls~~~l~e------r~s~~~~~gv~l~~~ 223 (322)
..+....+++.+.+|+....+|-.|-...+ ...-.+.+++..++.-+-+.+ +|| |.-+.-++|+.+.+.
T Consensus 255 ~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~ 333 (344)
T PF06379_consen 255 LLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLIL 333 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHH
Confidence 456677788889999999888888887776 345577777777777776654 555 333445667777666
Q ss_pred hhheeecC
Q 042323 224 GTIIVSLG 231 (322)
Q Consensus 224 Gv~lv~~~ 231 (322)
.++++..+
T Consensus 334 s~~ivG~G 341 (344)
T PF06379_consen 334 SVVIVGYG 341 (344)
T ss_pred HHHHHhcc
Confidence 66665543
No 111
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=39.80 E-value=3.6e+02 Score=26.19 Aligned_cols=125 Identities=21% Similarity=0.193 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-cc-----hHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 159 KVSLLICPFWFLAQLTFNLSLKY-TT-----VTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~al~~-~s-----~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
....++.++.-..++.|+-+... .+ +...+.+....-.++.++--.+.+.|++.....- =+++|.+-++...
T Consensus 197 ~~~~lGt~lLw~gW~gFN~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~~gk~~~~~~~n--G~LAGLVaita~a 274 (403)
T TIGR00836 197 PLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACN--GILAGLVAITPGC 274 (403)
T ss_pred HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHh--hhhhhheeecCCC
Confidence 34445555544555555554432 11 1222333333333333333333455677654332 2334555444322
Q ss_pred CCCCcccccCCCCChHHHHHHHHH-HHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 042323 233 SENSSSVSATASNPLLGDILSLAS-AGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFL 299 (322)
Q Consensus 233 ~~~~~~~~~~~~~~~~G~ll~L~a-a~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 299 (322)
.. ..++...+..+++ .+++-.+..+.+| .+=+| .++...+=+..++++.+..-
T Consensus 275 ~~---------v~p~~A~viG~iag~~~~~~~~~l~~~-~~iDD----~~~~~~vHg~~Gi~G~i~~g 328 (403)
T TIGR00836 275 GV---------VTPWGAIIIGLVAGVLCYLAVSKLKKK-LKIDD----PLDAFAVHGVGGIWGLIATG 328 (403)
T ss_pred CC---------CCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----CcccchhhhhhHHHHHHHHH
Confidence 11 2344555666555 4444444434444 33222 45666665666666665543
No 112
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=39.77 E-value=2.3e+02 Score=28.11 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=31.9
Q ss_pred CcccHHHHHHHHHHHHhhhee---ecCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 042323 208 EKFTWVKLVSVLLCMAGTIIV---SLGDSENSSSVSATASNPLLGDILSLASAGLYAVYITLIRK 269 (322)
Q Consensus 208 er~s~~~~~gv~l~~~Gv~lv---~~~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~ 269 (322)
|+-+.+|.+-.+.+++|++.. ...+. ++...+.++.+++.++|....+..--
T Consensus 95 D~~~~Rk~~l~~~~~~~~~~~~~l~~v~~----------~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 95 DYGGRRKRFLLIFTLLGVLATALLWFVSP----------GQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhCc----------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555422 11111 23478889999999999888776543
No 113
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=38.92 E-value=27 Score=32.13 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=38.8
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 184 VTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 184 ~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
+=+.++....--++..+++.+.++..+++..|+|.++.++|.++-.
T Consensus 268 sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 268 SLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred ceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 3345666777788899999999999999999999999999998654
No 114
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=38.28 E-value=44 Score=26.89 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=10.7
Q ss_pred hHHHHHHhhhHHHHHHHHHHH
Q 042323 184 VTSNTILSSTSSLFTFLVSLL 204 (322)
Q Consensus 184 ~s~a~il~~t~Pvft~lls~~ 204 (322)
.-.++++.|..|++.++++.+
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~ 87 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAV 87 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556555555443
No 115
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=37.85 E-value=1.1e+02 Score=27.52 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=22.0
Q ss_pred CcchhhHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 042323 1 MTSEVWKWGLGLIYIVAVAIIWIAASFVVQSVV 33 (322)
Q Consensus 1 ~~~~~~~~~lG~~~~~~v~v~Wv~ss~l~~~l~ 33 (322)
|+++++|...=+..+++.+++-...+.+.....
T Consensus 1 MK~~k~~~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 1 MKKKKKRILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788887666556666666667776776666555
No 116
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=37.69 E-value=3.7e+02 Score=25.59 Aligned_cols=102 Identities=20% Similarity=0.113 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccchHHH---HHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---hhheeec-CCCCCCcccccC
Q 042323 170 LAQLTFNLSLKYTTVTSN---TILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMA---GTIIVSL-GDSENSSSVSAT 242 (322)
Q Consensus 170 ~~~~~~~~al~~~s~s~a---~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~---Gv~lv~~-~~~~~~~~~~~~ 242 (322)
+.-.+.|..+++.++... ++=.+|--.|..-.-.++.++-|+..|+.-+.++++ |.+++.. --..+
T Consensus 109 i~PAliy~~~n~~~p~~~~GWaIP~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~~------- 181 (390)
T COG3004 109 IAPALIYLALNAGDPATLEGWAIPMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTTD------- 181 (390)
T ss_pred hhhhhHhheeecCChhhhcCcCcccHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcCC-------
Confidence 444556677777766322 455666666666655566677788888887777764 5554332 11111
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHH
Q 042323 243 ASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFL 290 (322)
Q Consensus 243 ~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~ 290 (322)
+-......++++.++-.++.|..++ +.++..+.+..
T Consensus 182 -----Ls~~al~~a~~~i~vL~~lN~~~v~-------~l~~Y~~~gvi 217 (390)
T COG3004 182 -----LSMAALGIAALAIAVLAVLNRLGVR-------RLSPYLLVGVI 217 (390)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHhCch-------hhhHHHHHHHH
Confidence 1123444556666666677776554 45666655543
No 117
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.70 E-value=14 Score=33.88 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhhe
Q 042323 155 TRVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTII 227 (322)
Q Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~l 227 (322)
.+.|....+.+++.+.-++.-.+-++.|++-+-.+=...-..--.+++..+++|..+...|-+.++.+.|..+
T Consensus 252 ~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~ 324 (347)
T KOG1442|consen 252 IKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLA 324 (347)
T ss_pred HHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHH
Confidence 3344445555555444444444445555543222222222344456777888888888887766655555543
No 118
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=35.64 E-value=62 Score=28.23 Aligned_cols=78 Identities=10% Similarity=0.110 Sum_probs=44.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH------H-----HHHhhhHHHHHHHHHHHHhcCccc---------
Q 042323 152 WTRTRVAKVSLLICPFWFLAQLTFNLSLKYTTVTS------N-----TILSSTSSLFTFLVSLLFLGEKFT--------- 211 (322)
Q Consensus 152 l~~~~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~------a-----~il~~t~Pvft~lls~~~l~er~s--------- 211 (322)
.+..+..+..+..+....-....|..+...+..+. . -.+....|+.+.++.+...++|..
T Consensus 109 ~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~w 188 (214)
T PF11139_consen 109 ASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSW 188 (214)
T ss_pred CCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33445556666655554444445555544332211 1 123456688888888888777653
Q ss_pred ----HHHHHHHHHHHHhhheee
Q 042323 212 ----WVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 212 ----~~~~~gv~l~~~Gv~lv~ 229 (322)
.+++.++++.++|+.++.
T Consensus 189 l~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 189 LRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHccHHHHHHHHHHHHHHHHH
Confidence 256677788888887654
No 119
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=34.62 E-value=1.3e+02 Score=27.97 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcccchHHHHH-HhhhHHHHHHHHHHHHhcC--cccHHH----HHHHHHHHHhhheeecCC
Q 042323 170 LAQLTFNLSLKYTTVTSNTI-LSSTSSLFTFLVSLLFLGE--KFTWVK----LVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 170 ~~~~~~~~al~~~s~s~a~i-l~~t~Pvft~lls~~~l~e--r~s~~~----~~gv~l~~~Gv~lv~~~~ 232 (322)
.-....+.|+++-+++...- .+...-.++.+-+.++++| +.+..+ ..|.++.+.||.++....
T Consensus 225 ~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 225 LQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 33456688999988776544 3444466777778888886 455544 455667788888876543
No 120
>PRK11663 regulatory protein UhpC; Provisional
Probab=32.56 E-value=2.9e+02 Score=26.41 Aligned_cols=46 Identities=9% Similarity=0.041 Sum_probs=23.4
Q ss_pred cchHHHHHHhhhHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHhhhe
Q 042323 182 TTVTSNTILSSTSSLFTFLVSLLF--LGEKFTWVKLVSVLLCMAGTII 227 (322)
Q Consensus 182 ~s~s~a~il~~t~Pvft~lls~~~--l~er~s~~~~~gv~l~~~Gv~l 227 (322)
.+.+..+.+.....+-..+.+.+. +-||.++++.+.+.+.+.++..
T Consensus 55 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 55 LSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN 102 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence 344555555544333333333222 3477777776665555555543
No 121
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=32.43 E-value=1.5e+02 Score=24.04 Aligned_cols=51 Identities=18% Similarity=-0.003 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042323 250 DILSLASAGLYAVYITLIRKKLPDDDGKNGDA-SMAQFLGFLGLFNLIIFLPVALILHF 307 (322)
Q Consensus 250 ~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~p~~~~~~~ 307 (322)
.++++++.++-+++..+.-++.+ +. ++..........+.+.+..+.++.+.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~-------~~gs~~~as~i~~~~G~i~~~i~~~~~~~ 54 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGK-------ALGSPLVASFISFGVGFILLLIILLITGR 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhCccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566666666666666555332 12 24444445555555555555544443
No 122
>PTZ00101 rhomboid-1 protease; Provisional
Probab=31.02 E-value=4.2e+02 Score=24.33 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 042323 247 LLGDILSLASAGLYAV 262 (322)
Q Consensus 247 ~~G~ll~L~aa~~~A~ 262 (322)
..|-+-++++++..+.
T Consensus 221 ~~aHlGG~i~G~llg~ 236 (278)
T PTZ00101 221 HVGHLGGLLSGISMGI 236 (278)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666665554
No 123
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=29.89 E-value=69 Score=19.79 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 042323 247 LLGDILSLASAGLYAVYITLI 267 (322)
Q Consensus 247 ~~G~ll~L~aa~~~A~~~vl~ 267 (322)
.+=+++.++.|.+||+|++.-
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 345678899999999999863
No 124
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=29.68 E-value=4.4e+02 Score=24.15 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=24.2
Q ss_pred cchHHHHHHhhhHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHhh
Q 042323 182 TTVTSNTILSSTSSLFTFLVSLLF--LGEKFTWVKLVSVLLCMAGT 225 (322)
Q Consensus 182 ~s~s~a~il~~t~Pvft~lls~~~--l~er~s~~~~~gv~l~~~Gv 225 (322)
.+.+..+++.+...+...+.+.+. +.||..+++.+-+...+.++
T Consensus 44 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 44 LTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455566666665555544444433 34788877766554433333
No 125
>PRK00259 intracellular septation protein A; Reviewed
Probab=28.92 E-value=3.7e+02 Score=22.96 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCcccHHHHHHHHH-HHHhhheeecCC
Q 042323 198 TFLVSLLFLGEKFTWVKLVSVLL-CMAGTIIVSLGD 232 (322)
Q Consensus 198 t~lls~~~l~er~s~~~~~gv~l-~~~Gv~lv~~~~ 232 (322)
.....++ .++|+...+|+..++ .+.|.+-+...|
T Consensus 36 ~~~~~~~-~~~~v~~m~~i~~~lv~vfGglTl~l~d 70 (179)
T PRK00259 36 QLAISWI-RYRKVEKMQLISLVVVVVFGGLTLVFHD 70 (179)
T ss_pred HHHHHHH-HhCCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 3334433 445777766655433 334444333333
No 126
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=24.79 E-value=4e+02 Score=21.97 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=13.3
Q ss_pred CCchhhHHHHHHHHHHH-HHHHHHHHHHHhc
Q 042323 151 RWTRTRVAKVSLLICPF-WFLAQLTFNLSLK 180 (322)
Q Consensus 151 ~l~~~~~~~~~l~~~~~-~~~~~~~~~~al~ 180 (322)
++-.++.++..+..|+. .......|+.++.
T Consensus 44 ~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~ 74 (182)
T PF00689_consen 44 PLINKRLLRRILIQGLIMAAACFFAFFLGLY 74 (182)
T ss_dssp -SSSHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHhHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444544544 3334445555554
No 127
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=24.74 E-value=8.9e+02 Score=26.40 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=5.6
Q ss_pred HHHHHhhhHHHH
Q 042323 186 SNTILSSTSSLF 197 (322)
Q Consensus 186 ~a~il~~t~Pvf 197 (322)
.++++.....+.
T Consensus 270 ~~g~~~~~~~ig 281 (1146)
T PRK08633 270 QVQYLLAASAIG 281 (1146)
T ss_pred HHHHHHHHHHHH
Confidence 445554444433
No 128
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=23.43 E-value=6.5e+02 Score=23.97 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=41.8
Q ss_pred HHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheee
Q 042323 176 NLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 176 ~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
..=++|.+--.=..-.+.+-+++.+.++.+++-+++..-.+|+.+.+..+.+-.
T Consensus 268 s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 268 SLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 344566665544555566778899999999999999999999999988888655
No 129
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=22.33 E-value=1.2e+02 Score=18.72 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042323 248 LGDILSLASAGLYAVYITLI 267 (322)
Q Consensus 248 ~G~ll~L~aa~~~A~~~vl~ 267 (322)
+=+++.++.|.+|++|++..
T Consensus 6 liVl~Pil~A~gWa~fNIg~ 25 (36)
T PF06298_consen 6 LIVLLPILPAAGWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 45677889999999999874
No 130
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.22 E-value=5e+02 Score=22.41 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 042323 247 LLGDILSLASAGLYAVYITLIRK 269 (322)
Q Consensus 247 ~~G~ll~L~aa~~~A~~~vl~k~ 269 (322)
+...+..+++.+.|-+..++...
T Consensus 147 ~k~~~~~~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 147 WKYILISVLAMVLWIVIFVLTSF 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777666666665
No 131
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=20.87 E-value=2.8e+02 Score=18.73 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhheeecCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 042323 213 VKLVSVLLCMAGTIIVSLGDSENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKK 270 (322)
Q Consensus 213 ~~~~gv~l~~~Gv~lv~~~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~ 270 (322)
..++|.++.++|++++..|+. |.++.+++-...|...-..|+.
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp---------------G~l~i~~GL~iLa~ef~wArr~ 46 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP---------------GLLVIFLGLAILATEFPWARRL 46 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC---------------cHHHHHHHHHHHHHhhHHHHHH
Confidence 356788899999998877643 4455555556666666555554
No 132
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=20.69 E-value=1.2e+02 Score=19.18 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042323 248 LGDILSLASAGLYAVYITLI 267 (322)
Q Consensus 248 ~G~ll~L~aa~~~A~~~vl~ 267 (322)
+=+++.++.|.+||+|++.-
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (40)
T PRK13240 6 LIVLAPILAAAGWAVFNIGK 25 (40)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 44677899999999999863
No 133
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.54 E-value=5.6e+02 Score=22.09 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 042323 247 LLGDILSLASAGLYAVYITLIRKK 270 (322)
Q Consensus 247 ~~G~ll~L~aa~~~A~~~vl~k~~ 270 (322)
+-+....++|+++++++..+-||.
T Consensus 178 l~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 178 LPPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677889999999998777764
No 134
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=20.18 E-value=9.7e+02 Score=24.73 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhh
Q 042323 159 KVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~ 226 (322)
+.+++.++++....+..........-+.+. -....|++...+-.+. ++=..+.++.+.+++..++
T Consensus 52 ~~A~l~aiLyl~~py~l~~~y~rgni~e~l-A~~llPlvll~~~~~~--~~~~~r~~~~lAl~~all~ 116 (616)
T PF10131_consen 52 KAAILAAILYLFSPYHLRNIYWRGNIPETL-AFALLPLVLLFLYRFI--KKRKYRYWILLALSMALLA 116 (616)
T ss_pred hHHHHHHHHHHHhHHHHHHHHhcchHHHHH-HHHHHHHHHHHHHHHH--hcCCchhHHHHHHHHHHHH
Confidence 346666776666555444444333333322 2455676553332232 2223455666666555554
Done!