Query 042323
Match_columns 322
No_of_seqs 421 out of 1814
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 2.8E-07 9.4E-12 71.8 9.1 71 162-232 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.5 1.4E-07 4.7E-12 76.3 5.6 71 162-232 34-105 (137)
3 3o7q_A L-fucose-proton symport 53.1 98 0.0034 27.6 10.7 47 181-227 57-105 (438)
4 1pw4_A Glycerol-3-phosphate tr 39.4 47 0.0016 29.9 6.1 163 133-305 5-178 (451)
5 3b9w_A Ammonium transporter fa 39.4 2.4E+02 0.0081 26.2 14.3 127 156-297 175-310 (407)
6 1u7g_A Probable ammonium trans 37.3 2.5E+02 0.0085 25.8 15.8 127 158-300 198-331 (385)
7 3hd6_A Ammonium transporter RH 25.4 4.4E+02 0.015 25.0 14.4 132 157-302 222-364 (490)
8 3o7q_A L-fucose-proton symport 21.3 3.1E+02 0.011 24.1 8.3 45 182-226 292-338 (438)
9 2b2h_A AMT-1, ammonium transpo 16.7 6.1E+02 0.021 23.3 16.4 124 159-300 188-318 (399)
10 2xut_A Proton/peptide symporte 12.3 7.7E+02 0.026 22.2 10.8 44 182-225 51-97 (524)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.56 E-value=2.8e-07 Score=71.77 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHH-hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 162 LLICPFWFLAQLTFNLSLKYTTVTSNTIL-SSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 162 l~~~~~~~~~~~~~~~al~~~s~s~a~il-~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
+...+++.++.+++..++++.|.+.+..+ .++.|+++.++++++++|+++..+++|+.+.++|++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45556688899999999999999999777 799999999999999999999999999999999999876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.48 E-value=1.4e-07 Score=76.27 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHH-hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCC
Q 042323 162 LLICPFWFLAQLTFNLSLKYTTVTSNTIL-SSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGD 232 (322)
Q Consensus 162 l~~~~~~~~~~~~~~~al~~~s~s~a~il-~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~ 232 (322)
++..+.++++++++++++++.+++.+..+ .++.|++++++++++++|+++..+++|+++.++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45566688899999999999999999888 899999999999999999999999999999999999886543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=53.12 E-value=98 Score=27.62 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=29.7
Q ss_pred ccchHHHHHHhhhHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHhhhe
Q 042323 181 YTTVTSNTILSSTSSLFTFLVSLLF--LGEKFTWVKLVSVLLCMAGTII 227 (322)
Q Consensus 181 ~~s~s~a~il~~t~Pvft~lls~~~--l~er~s~~~~~gv~l~~~Gv~l 227 (322)
..+.+..+++.+...+...+.+.+. +-||+.+++.+.+...+.++..
T Consensus 57 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 57 TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3566677777777666655555444 3588888887666555555543
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=39.44 E-value=47 Score=29.91 Aligned_cols=163 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred ccccCCchhhhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHhhhHHHHHHHHHHHHhc
Q 042323 133 EFQSSLPIVEAEESAAKGRWTRTRVAKVSLLICPFWFLAQLTFNLSLKYT-----TVTSNTILSSTSSLFTFLVSLLFLG 207 (322)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~al~~~-----s~s~a~il~~t~Pvft~lls~~~l~ 207 (322)
+.....++.+.++.++..+...++.........+........+...+... +.+..+++.+...+...+.+.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~ 84 (451)
T 1pw4_A 5 KPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84 (451)
T ss_dssp CCCCCCCCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred --CcccHHHHHHHHHHHHhhheeecCC----CCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCC
Q 042323 208 --EKFTWVKLVSVLLCMAGTIIVSLGD----SENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDA 281 (322)
Q Consensus 208 --er~s~~~~~gv~l~~~Gv~lv~~~~----~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~ 281 (322)
||..+++++.+...+.++..+...- ..+. ..-...-.+.+++.+..+.....+.....++++ +-
T Consensus 85 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----r~ 154 (451)
T 1pw4_A 85 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE----RG 154 (451)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH----HH
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccH------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchh----hh
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 042323 282 SMAQFLGFLGLFNLIIFLPVALIL 305 (322)
Q Consensus 282 ~~~~~~~~~~l~~~l~~~p~~~~~ 305 (322)
....+......++.++..++....
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=39.42 E-value=2.4e+02 Score=26.20 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhhHHHHHH-----HHHHHHhcCcccHHHHHHHHHHHHhhheeec
Q 042323 156 RVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSTSSLFTF-----LVSLLFLGEKFTWVKLVSVLLCMAGTIIVSL 230 (322)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t~Pvft~-----lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~ 230 (322)
.......++..+.-..+..|+-++........++++.....-.. ++++++.+.|++.....-- +++|.+-++.
T Consensus 175 hn~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~~~~~~nG--~LAGLVAITa 252 (407)
T 3b9w_A 175 TSDRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANA--ALAGGVAIGS 252 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHH--TTHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHh--hhhhhheecc
Confidence 33445556655555577778888543222222222222222222 2333334567776443322 2345544443
Q ss_pred CCCCCCcccccCCCCChHHHHHHHHHHHHHHHHH-HH---HhhhCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 042323 231 GDSENSSSVSATASNPLLGDILSLASAGLYAVYI-TL---IRKKLPDDDGKNGDASMAQFLGFLGLFNLII 297 (322)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~-vl---~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 297 (322)
+... -.++...++.+++++..-... .+ .+++++=+| .++...+=+..++++.+.
T Consensus 253 ~~~~---------v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD----~l~a~~vHgv~Gi~G~l~ 310 (407)
T 3b9w_A 253 VCNI---------VGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTID----TCGVHNLHGLPGLLGGFS 310 (407)
T ss_dssp TTTT---------SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCC----TTCHHHHTTHHHHHHHHH
T ss_pred CCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CCCCeecchHHHHHHHHH
Confidence 2221 234445556555555444333 22 122233222 466665555555555443
No 6
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=37.29 E-value=2.5e+02 Score=25.82 Aligned_cols=127 Identities=16% Similarity=0.101 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--c-hH---HHHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecC
Q 042323 158 AKVSLLICPFWFLAQLTFNLSLKYT--T-VT---SNTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLG 231 (322)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~al~~~--s-~s---~a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~ 231 (322)
.....++..+.-..+..|+-+-... . ++ ..+.+....-.++.++--.+.+.|++.....-- +++|.+-++.+
T Consensus 198 ~~~~~lGt~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG--~lAGLVaITa~ 275 (385)
T 1u7g_A 198 LPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPA 275 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhhcchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH--HHHhhhhhccC
Confidence 3445555555455666677543322 1 11 122222222233333222334567776543322 23444434322
Q ss_pred CCCCCcccccCCCCChHHHHHHHHHHHHHHHHHH-HHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 042323 232 DSENSSSVSATASNPLLGDILSLASAGLYAVYIT-LIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLP 300 (322)
Q Consensus 232 ~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~v-l~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p 300 (322)
.. . -+++-..++.+++++..-.... +.+| .+=+| .++...+=+..++++.+..-.
T Consensus 276 ~~-~--------v~p~~A~iiG~iag~i~~~~~~~l~~~-l~iDD----~l~a~~vHgv~Gi~G~l~~gl 331 (385)
T 1u7g_A 276 CG-Y--------IGVGGALIIGVVAGLAGLWGVTMLKRL-LRVDD----PCDVFGVHGVCGIVGCIMTGI 331 (385)
T ss_dssp TT-T--------SCHHHHHHHHHHHHHHHHHHHHHHHHH-HCSCC----GGGHHHHHHHHHHHHHHHHHH
T ss_pred CC-C--------CCHHHHHHHHhHHHHHHHHHHHHHHHh-CCCCC----CCCCEeecccccHHHHHHHHH
Confidence 22 1 2344556666666655444333 4334 33222 577777777777777765443
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=25.44 E-value=4.4e+02 Score=25.02 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhhh-HHHH-----HHHHHHHH-hcCcccHHHHHHHHHHHHhhheee
Q 042323 157 VAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSST-SSLF-----TFLVSLLF-LGEKFTWVKLVSVLLCMAGTIIVS 229 (322)
Q Consensus 157 ~~~~~l~~~~~~~~~~~~~~~al~~~s~s~a~il~~t-~Pvf-----t~lls~~~-l~er~s~~~~~gv~l~~~Gv~lv~ 229 (322)
......++..+.-.++..|+-|....+.....++.+| ...- .+++++++ .+.|++.....-- +++|.+-++
T Consensus 222 n~~~a~LGt~lLW~GWfGFN~gs~~~~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG--~LAGLVAIT 299 (490)
T 3hd6_A 222 SDLFAMIGTLFLWMYWPSFNSAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNA--TLAGGVAVG 299 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHG--GGHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhhchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhc--eeeeEEEEc
Confidence 3445555555555566677766654222222222222 1222 22333332 2456766443322 344555444
Q ss_pred cCCCCCCcccccCCCCChHHHHHHHHHHHH-HHHHHHH---HhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 042323 230 LGDSENSSSVSATASNPLLGDILSLASAGL-YAVYITL---IRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLPVA 302 (322)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~G~ll~L~aa~~-~A~~~vl---~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~ 302 (322)
.+.... -.++...++.+++++. +..+..+ .+++.+=+| .++...+=+..++++.+....++
T Consensus 300 ~~a~~~--------v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD----~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 300 TAAEMM--------LMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQD----TCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp TTTTTC--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----TTCHHHHTHHHHHHHHHHHHHHH
T ss_pred cCcccc--------cCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCc----cccchHHhhHHHHHHHHHHHHHh
Confidence 222211 1244455565555544 3333321 222233222 57888887888888877654443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=21.34 E-value=3.1e+02 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=21.9
Q ss_pred cchHHHHHHhhhHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHhhh
Q 042323 182 TTVTSNTILSSTSSLFTFLVSLLF--LGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 182 ~s~s~a~il~~t~Pvft~lls~~~--l~er~s~~~~~gv~l~~~Gv~ 226 (322)
.+...++.+.....+...+...+. +-+|+.+++.+.+...+.++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 292 MTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 455555555554433333222221 346777777665544444443
No 9
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=16.68 E-value=6.1e+02 Score=23.26 Aligned_cols=124 Identities=14% Similarity=0.092 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc-c--hH---HHHHHhhhHHHH-HHHHHHHHhcCcccHHHHHHHHHHHHhhheeecC
Q 042323 159 KVSLLICPFWFLAQLTFNLSLKYT-T--VT---SNTILSSTSSLF-TFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLG 231 (322)
Q Consensus 159 ~~~l~~~~~~~~~~~~~~~al~~~-s--~s---~a~il~~t~Pvf-t~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~ 231 (322)
....++..+.-..+..|+-+-... + ++ ..+.+....-.+ .++++++. .|++.....-- +++|.+-++.+
T Consensus 188 ~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~~~~~~~nG--~lAGLVaITa~ 263 (399)
T 2b2h_A 188 PLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKPGSLGIVSG--AIAGLAAITPA 263 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHH--HHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHH--HHHhhhhhccc
Confidence 344555555445666677553332 1 11 112222222222 33344443 67766433322 23444434322
Q ss_pred CCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 042323 232 DSENSSSVSATASNPLLGDILSLASAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIFLP 300 (322)
Q Consensus 232 ~~~~~~~~~~~~~~~~~G~ll~L~aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p 300 (322)
... -.++-..++.+++++..-....+.+| .+=+| .++...+=+..++++.+..-.
T Consensus 264 ~~~---------v~p~~A~iiG~iag~i~~~~~~l~~k-l~iDD----~l~a~~vHgv~Gi~G~l~~gl 318 (399)
T 2b2h_A 264 AGF---------VDVKGAIVIGLVAGIVCYLAMDFRIK-KKIDE----SLDAWAIHGIGGLWGSVAVGI 318 (399)
T ss_dssp TTT---------CCHHHHHHHHHHHHHHHHHHHHHHHH-TTCCC----TTCHHHHHHHHHHHHHHHHHH
T ss_pred ccc---------CCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----CCCceeccchhhHHHHHHHHH
Confidence 221 23444556666555554443344444 33333 578887777777777765433
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=12.32 E-value=7.7e+02 Score=22.22 Aligned_cols=44 Identities=9% Similarity=0.017 Sum_probs=24.1
Q ss_pred cchHHHHHHhhhHHHHHHHHHHHH--hcCcc-cHHHHHHHHHHHHhh
Q 042323 182 TTVTSNTILSSTSSLFTFLVSLLF--LGEKF-TWVKLVSVLLCMAGT 225 (322)
Q Consensus 182 ~s~s~a~il~~t~Pvft~lls~~~--l~er~-s~~~~~gv~l~~~Gv 225 (322)
.+...++.+.+...+...+...+. +.+|+ .+++.+.+...+.++
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 455666666666555544443332 34788 777765544443333
Done!