Query 042323
Match_columns 322
No_of_seqs 421 out of 1814
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 08:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042323.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042323hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 68.5 35 0.0025 29.3 16.3 123 160-298 198-327 (383)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 51.1 7.6 0.00056 32.8 4.9 45 182-226 56-102 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 32.4 21 0.0016 17.8 2.7 20 247-266 2-21 (27)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 12.7 3.1E+02 0.023 21.7 16.7 12 183-194 283-294 (447)
5 d1pv7a_ f.38.1.2 (A:) Lactose 9.7 3.6E+02 0.026 20.5 12.2 22 207-228 283-304 (417)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 8.9 1.4E+02 0.011 15.9 2.7 18 5-22 14-31 (37)
7 d1pv7a_ f.38.1.2 (A:) Lactose 7.0 2.9E+02 0.021 21.2 5.4 36 181-216 39-76 (417)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.8 6E+02 0.043 19.5 5.9 31 196-226 36-66 (248)
9 d1wpga4 f.33.1.1 (A:1-124,A:24 4.4 8.7E+02 0.063 19.9 12.0 14 168-181 323-336 (472)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 3.4 5.8E+02 0.042 16.2 4.2 15 16-30 39-53 (100)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=68.52 E-value=35 Score=29.35 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHH------HHHHhhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHhhheeecCCC
Q 042323 160 VSLLICPFWFLAQLTFNLSLKYTTVTS------NTILSSTSSLFTFLVSLLFLGEKFTWVKLVSVLLCMAGTIIVSLGDS 233 (322)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~al~~~s~s~------a~il~~t~Pvft~lls~~~l~er~s~~~~~gv~l~~~Gv~lv~~~~~ 233 (322)
...++..+.-.....|+-+-....... .+.+....-.++.++...+.++|++.....--. ++|.+-++.+..
T Consensus 198 ~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~ 275 (383)
T d1u7ga_ 198 MVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGA--IAGLVGVTPACG 275 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTT
T ss_pred hhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcccCcc
Confidence 344555555556666666655543222 222333334444444444566777766544322 345554442221
Q ss_pred CCCcccccCCCCChHHHHHHHH-HHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 042323 234 ENSSSVSATASNPLLGDILSLA-SAGLYAVYITLIRKKLPDDDGKNGDASMAQFLGFLGLFNLIIF 298 (322)
Q Consensus 234 ~~~~~~~~~~~~~~~G~ll~L~-aa~~~A~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 298 (322)
. -+++...+..++ +.+++-.+..+.+|. +-+| .++...+=+..++++.+..
T Consensus 276 -~--------v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~iDD----~~~~~~vHg~~Gi~G~l~~ 327 (383)
T d1u7ga_ 276 -Y--------IGVGGALIIGVVAGLAGLWGVTMLKRLL-RVDD----PCDVFGVHGVCGIVGCIMT 327 (383)
T ss_dssp -T--------SCHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCC----GGGHHHHHHHHHHHHHHHH
T ss_pred -c--------cchhhHHHHHhhccHHHHHHHHHHHhhc-cccc----ccceEeehhhhHHHHHHHH
Confidence 1 223334555544 445555556554443 3222 4677776666666666543
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=51.11 E-value=7.6 Score=32.84 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=27.5
Q ss_pred cchHHHHHHhhhHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHhhh
Q 042323 182 TTVTSNTILSSTSSLFTFLVSLLF--LGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 182 ~s~s~a~il~~t~Pvft~lls~~~--l~er~s~~~~~gv~l~~~Gv~ 226 (322)
.+.+..+++.+...+...+.+.+. +-||..+++.+.+.+.+.++.
T Consensus 56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 102 (447)
T d1pw4a_ 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 102 (447)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 455666777666665555554443 358999888775555444443
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=32.42 E-value=21 Score=17.82 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 042323 247 LLGDILSLASAGLYAVYITL 266 (322)
Q Consensus 247 ~~G~ll~L~aa~~~A~~~vl 266 (322)
.+|.+.+-+++++||.|.-+
T Consensus 2 vlgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeehHHHHHHHHHHHHHHh
Confidence 36888889999999998654
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.74 E-value=3.1e+02 Score=21.68 Aligned_cols=12 Identities=0% Similarity=-0.164 Sum_probs=5.2
Q ss_pred chHHHHHHhhhH
Q 042323 183 TVTSNTILSSTS 194 (322)
Q Consensus 183 s~s~a~il~~t~ 194 (322)
+...++.+....
T Consensus 283 ~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 283 ALDKSSWAYFLY 294 (447)
T ss_dssp CHHHHHHHHHHH
T ss_pred ccchhhhhhhcc
Confidence 444444444433
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.66 E-value=3.6e+02 Score=20.51 Aligned_cols=22 Identities=5% Similarity=-0.070 Sum_probs=12.6
Q ss_pred cCcccHHHHHHHHHHHHhhhee
Q 042323 207 GEKFTWVKLVSVLLCMAGTIIV 228 (322)
Q Consensus 207 ~er~s~~~~~gv~l~~~Gv~lv 228 (322)
.+|...++.+.+...+.++..+
T Consensus 283 ~~r~~~~~~~~~~~~~~~~~~~ 304 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhHHHHHHhhh
Confidence 3566666666655555555433
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.91 E-value=1.4e+02 Score=15.90 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=12.5
Q ss_pred hhHHHHhHHHHHHHHHHH
Q 042323 5 VWKWGLGLIYIVAVAIIW 22 (322)
Q Consensus 5 ~~~~~lG~~~~~~v~v~W 22 (322)
+-...+|++++++.+++.
T Consensus 14 rtsLy~GlLlifvl~vLF 31 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 345567888888777764
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.97 E-value=2.9e+02 Score=21.18 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=24.3
Q ss_pred ccchHHHHHHhhhHHHHHHHHHHHH--hcCcccHHHHH
Q 042323 181 YTTVTSNTILSSTSSLFTFLVSLLF--LGEKFTWVKLV 216 (322)
Q Consensus 181 ~~s~s~a~il~~t~Pvft~lls~~~--l~er~s~~~~~ 216 (322)
..+.+..+++.+...+...+.+.+. +-||..+++.+
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l 76 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 4677888888887777666665554 34777666543
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.84 E-value=6e+02 Score=19.49 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHhhh
Q 042323 196 LFTFLVSLLFLGEKFTWVKLVSVLLCMAGTI 226 (322)
Q Consensus 196 vft~lls~~~l~er~s~~~~~gv~l~~~Gv~ 226 (322)
+.+.++.++++.+|.-..|++.=.+.+..+.
T Consensus 36 ~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 36 ILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 4555666777888877777765544444444
No 9
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.43 E-value=8.7e+02 Score=19.94 Aligned_cols=14 Identities=7% Similarity=-0.245 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhcc
Q 042323 168 WFLAQLTFNLSLKY 181 (322)
Q Consensus 168 ~~~~~~~~~~al~~ 181 (322)
.......+++...+
T Consensus 323 ~~~~~~~~~~~~~~ 336 (472)
T d1wpga4 323 GAATVGAAAWWFMY 336 (472)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455555444
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.36 E-value=5.8e+02 Score=16.18 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 042323 16 VAVAIIWIAASFVVQ 30 (322)
Q Consensus 16 ~~v~v~Wv~ss~l~~ 30 (322)
+.+.|.|...-.+.+
T Consensus 39 I~~~V~~~l~~~~~~ 53 (100)
T d3dtub2 39 ITIFVTLLILYAVWR 53 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 333333333333333
Done!