Query 042324
Match_columns 554
No_of_seqs 143 out of 156
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 100.0 9.9E-46 2.2E-50 398.6 29.0 325 63-393 1-514 (522)
2 PF05701 WEMBL: Weak chloropla 98.2 0.0001 2.2E-09 81.3 18.8 177 188-380 311-522 (522)
3 TIGR02168 SMC_prok_B chromosom 95.9 5.1 0.00011 47.0 27.1 13 486-498 1093-1105(1179)
4 TIGR02169 SMC_prok_A chromosom 95.0 9.7 0.00021 45.0 25.7 54 485-539 1077-1136(1164)
5 KOG0971 Microtubule-associated 94.4 2.7 5.9E-05 50.0 18.8 27 286-313 493-519 (1243)
6 COG4942 Membrane-bound metallo 94.4 10 0.00022 42.0 22.1 49 97-145 38-86 (420)
7 TIGR02168 SMC_prok_B chromosom 93.8 18 0.00039 42.6 25.3 7 532-538 1144-1150(1179)
8 KOG0996 Structural maintenance 93.7 3.2 6.9E-05 50.5 17.9 67 192-260 492-558 (1293)
9 KOG0994 Extracellular matrix g 92.7 16 0.00034 45.1 21.2 24 375-398 1641-1664(1758)
10 PF07888 CALCOCO1: Calcium bin 92.0 9.3 0.0002 43.5 17.8 30 361-390 411-440 (546)
11 TIGR02169 SMC_prok_A chromosom 90.7 42 0.00091 39.8 23.8 8 374-381 539-546 (1164)
12 COG1196 Smc Chromosome segrega 89.4 62 0.0013 39.8 26.2 52 486-538 1070-1127(1163)
13 KOG0161 Myosin class II heavy 88.8 87 0.0019 41.0 24.0 46 100-145 1269-1314(1930)
14 COG1196 Smc Chromosome segrega 88.5 71 0.0015 39.3 28.2 41 100-140 670-710 (1163)
15 TIGR00606 rad50 rad50. This fa 86.8 72 0.0016 39.8 21.5 70 191-260 763-838 (1311)
16 COG1579 Zn-ribbon protein, pos 85.7 24 0.00053 36.4 14.2 10 392-401 178-187 (239)
17 KOG0971 Microtubule-associated 84.0 1.1E+02 0.0025 37.3 28.7 102 296-401 422-531 (1243)
18 PRK11637 AmiB activator; Provi 83.2 74 0.0016 34.5 19.9 9 440-448 329-337 (428)
19 COG1579 Zn-ribbon protein, pos 83.1 61 0.0013 33.5 16.9 52 190-241 93-144 (239)
20 PRK09039 hypothetical protein; 80.0 78 0.0017 33.9 15.9 129 96-255 52-183 (343)
21 COG4942 Membrane-bound metallo 79.5 1.1E+02 0.0024 34.2 19.9 67 190-258 42-108 (420)
22 PF00038 Filament: Intermediat 78.9 18 0.0004 37.0 10.5 158 98-261 97-279 (312)
23 PF09726 Macoilin: Transmembra 78.7 1.2E+02 0.0027 35.7 18.2 61 189-258 456-516 (697)
24 PF00261 Tropomyosin: Tropomyo 77.3 63 0.0014 32.5 13.6 48 357-404 166-220 (237)
25 KOG0161 Myosin class II heavy 74.7 2.9E+02 0.0063 36.5 27.2 34 203-236 995-1028(1930)
26 PF10174 Cast: RIM-binding pro 74.2 2E+02 0.0044 34.5 21.6 52 188-239 431-490 (775)
27 PF08317 Spc7: Spc7 kinetochor 73.2 90 0.0019 33.0 14.0 43 193-235 209-251 (325)
28 COG4026 Uncharacterized protei 73.1 99 0.0021 32.3 13.6 123 86-253 92-214 (290)
29 PRK15178 Vi polysaccharide exp 73.0 1.6E+02 0.0036 32.9 17.1 126 192-332 248-389 (434)
30 TIGR00606 rad50 rad50. This fa 70.9 2.8E+02 0.0061 34.8 28.0 41 104-144 744-784 (1311)
31 PRK02224 chromosome segregatio 69.3 2.4E+02 0.0052 33.2 26.3 236 98-399 343-590 (880)
32 PF10174 Cast: RIM-binding pro 68.8 2.6E+02 0.0057 33.6 21.2 132 81-240 36-168 (775)
33 PF12128 DUF3584: Protein of u 68.3 3.1E+02 0.0067 34.2 25.2 72 186-259 600-671 (1201)
34 COG2433 Uncharacterized conser 66.3 1.1E+02 0.0024 35.7 13.6 20 60-79 295-314 (652)
35 PF12761 End3: Actin cytoskele 65.7 45 0.00098 33.6 9.3 98 95-235 94-195 (195)
36 smart00787 Spc7 Spc7 kinetocho 65.6 1.4E+02 0.003 31.9 13.4 44 193-236 204-247 (312)
37 PTZ00121 MAEBL; Provisional 65.2 77 0.0017 40.5 12.6 29 305-333 1188-1216(2084)
38 KOG4809 Rab6 GTPase-interactin 65.0 2.2E+02 0.0049 33.1 15.4 62 189-259 348-409 (654)
39 PRK04778 septation ring format 64.7 2.6E+02 0.0055 31.9 20.4 67 191-259 315-391 (569)
40 PF09730 BicD: Microtubule-ass 64.1 3.1E+02 0.0068 32.7 19.8 41 104-144 265-305 (717)
41 KOG0933 Structural maintenance 63.5 3.8E+02 0.0082 33.5 20.4 115 192-316 314-431 (1174)
42 PF07888 CALCOCO1: Calcium bin 62.4 3E+02 0.0065 31.9 22.5 24 191-214 211-234 (546)
43 KOG4403 Cell surface glycoprot 62.3 2.8E+02 0.0061 31.5 15.6 25 123-147 250-274 (575)
44 PF10473 CENP-F_leu_zip: Leuci 61.8 1.5E+02 0.0033 28.3 14.7 47 98-144 18-64 (140)
45 PRK04863 mukB cell division pr 60.7 4.8E+02 0.01 33.7 19.6 49 97-145 286-334 (1486)
46 PF05911 DUF869: Plant protein 60.7 1.2E+02 0.0026 36.3 13.0 58 191-257 636-693 (769)
47 PF05384 DegS: Sensor protein 60.0 1.7E+02 0.0037 28.5 11.9 102 214-318 20-125 (159)
48 PF07926 TPR_MLP1_2: TPR/MLP1/ 59.3 1.5E+02 0.0032 27.4 15.7 46 191-236 57-102 (132)
49 PF10498 IFT57: Intra-flagella 58.6 87 0.0019 34.1 10.7 60 199-260 251-310 (359)
50 PF04111 APG6: Autophagy prote 57.2 1.6E+02 0.0035 31.3 12.2 20 216-235 115-134 (314)
51 TIGR01010 BexC_CtrB_KpsE polys 56.2 2.7E+02 0.0058 29.4 13.8 43 216-260 216-258 (362)
52 KOG0933 Structural maintenance 55.8 5E+02 0.011 32.5 20.1 23 123-145 699-721 (1174)
53 PTZ00121 MAEBL; Provisional 55.2 6.1E+02 0.013 33.2 24.8 44 289-333 1321-1364(2084)
54 KOG0977 Nuclear envelope prote 54.3 4E+02 0.0087 30.9 23.7 127 104-258 92-218 (546)
55 PHA02562 46 endonuclease subun 53.0 2.6E+02 0.0056 30.9 13.5 55 181-236 288-345 (562)
56 PRK11637 AmiB activator; Provi 52.9 3.4E+02 0.0073 29.6 22.0 27 204-230 100-126 (428)
57 PF10498 IFT57: Intra-flagella 52.5 3.5E+02 0.0075 29.6 15.1 54 191-244 271-324 (359)
58 KOG0250 DNA repair protein RAD 52.4 5.7E+02 0.012 32.0 17.5 42 189-230 347-388 (1074)
59 COG5185 HEC1 Protein involved 51.1 2.7E+02 0.0059 32.0 13.0 24 210-233 597-620 (622)
60 KOG0979 Structural maintenance 49.4 6.2E+02 0.013 31.6 20.0 109 190-319 245-353 (1072)
61 PF15254 CCDC14: Coiled-coil d 48.7 1.2E+02 0.0027 36.3 10.4 115 208-334 428-551 (861)
62 KOG0250 DNA repair protein RAD 47.6 6.7E+02 0.014 31.5 25.9 174 195-401 276-449 (1074)
63 PF05377 FlaC_arch: Flagella a 47.6 63 0.0014 26.6 5.7 36 202-237 2-37 (55)
64 KOG0999 Microtubule-associated 46.4 5.6E+02 0.012 30.2 20.5 27 376-402 231-257 (772)
65 PRK00409 recombination and DNA 45.8 2.9E+02 0.0062 33.0 13.1 42 194-235 510-551 (782)
66 COG3883 Uncharacterized protei 45.3 4E+02 0.0086 28.2 14.4 45 192-236 37-81 (265)
67 PLN03188 kinesin-12 family pro 42.9 5.1E+02 0.011 33.1 14.7 35 205-239 1070-1104(1320)
68 PF08826 DMPK_coil: DMPK coile 42.6 1E+02 0.0023 25.6 6.4 44 96-139 17-60 (61)
69 PF05276 SH3BP5: SH3 domain-bi 42.0 4.2E+02 0.009 27.5 15.8 92 299-401 78-169 (239)
70 KOG4403 Cell surface glycoprot 41.5 1.6E+02 0.0034 33.4 9.3 24 195-218 237-260 (575)
71 PF13851 GAS: Growth-arrest sp 40.6 3.8E+02 0.0083 26.7 14.8 96 99-238 29-131 (201)
72 PF00261 Tropomyosin: Tropomyo 39.3 4.2E+02 0.009 26.7 17.0 52 97-148 8-59 (237)
73 KOG0964 Structural maintenance 38.9 8.9E+02 0.019 30.4 19.9 62 191-254 746-823 (1200)
74 PRK15422 septal ring assembly 38.1 1.7E+02 0.0037 25.8 7.2 50 190-239 22-71 (79)
75 TIGR01069 mutS2 MutS2 family p 37.2 4.8E+02 0.01 31.2 13.1 42 195-236 506-547 (771)
76 PF10234 Cluap1: Clusterin-ass 37.0 2.3E+02 0.0051 29.8 9.4 52 191-242 167-218 (267)
77 PRK10884 SH3 domain-containing 36.3 1.5E+02 0.0034 29.8 7.8 15 192-206 99-113 (206)
78 COG3074 Uncharacterized protei 36.2 2E+02 0.0044 25.0 7.3 51 190-240 22-72 (79)
79 PF05010 TACC: Transforming ac 34.6 5.1E+02 0.011 26.3 17.6 44 192-235 68-111 (207)
80 PF01576 Myosin_tail_1: Myosin 34.0 14 0.00029 44.1 0.0 39 368-406 469-507 (859)
81 PRK12472 hypothetical protein; 34.0 4.7E+02 0.01 30.1 11.7 92 276-393 206-309 (508)
82 TIGR01069 mutS2 MutS2 family p 33.7 7.1E+02 0.015 29.9 13.8 41 195-235 499-539 (771)
83 PRK00409 recombination and DNA 33.6 7.4E+02 0.016 29.7 13.9 41 195-235 504-544 (782)
84 KOG0995 Centromere-associated 33.1 6.7E+02 0.014 29.4 12.8 43 191-233 337-379 (581)
85 PRK10476 multidrug resistance 32.7 5.9E+02 0.013 26.6 13.3 26 188-213 81-106 (346)
86 TIGR00998 8a0101 efflux pump m 31.8 5.8E+02 0.012 26.1 14.7 48 188-235 75-122 (334)
87 PRK04863 mukB cell division pr 31.5 1.3E+03 0.028 30.1 19.5 66 193-260 837-903 (1486)
88 PF05615 THOC7: Tho complex su 31.5 2.1E+02 0.0045 26.4 7.3 49 97-145 60-108 (139)
89 PF05667 DUF812: Protein of un 31.3 9.1E+02 0.02 28.3 13.9 11 20-30 143-153 (594)
90 KOG0995 Centromere-associated 30.9 9.4E+02 0.02 28.3 21.5 19 96-114 307-325 (581)
91 PF15249 GLTSCR1: Glioma tumor 30.8 31 0.00067 31.0 1.7 16 61-76 16-31 (109)
92 KOG3478 Prefoldin subunit 6, K 29.9 2.1E+02 0.0045 26.9 6.8 48 188-235 60-111 (120)
93 PF00769 ERM: Ezrin/radixin/mo 29.3 6.4E+02 0.014 25.9 12.7 54 191-244 80-133 (246)
94 KOG0977 Nuclear envelope prote 29.2 9.7E+02 0.021 27.9 14.2 68 191-260 97-164 (546)
95 PF09726 Macoilin: Transmembra 28.8 1.1E+03 0.023 28.3 17.6 19 217-235 421-439 (697)
96 KOG4673 Transcription factor T 26.8 3.6E+02 0.0078 32.5 9.4 158 226-398 344-522 (961)
97 PF07106 TBPIP: Tat binding pr 26.7 1.4E+02 0.003 28.4 5.5 36 195-230 74-109 (169)
98 KOG0994 Extracellular matrix g 26.5 1.5E+03 0.033 29.3 25.5 16 64-79 1398-1413(1758)
99 PF10168 Nup88: Nuclear pore c 26.4 4.9E+02 0.011 31.0 10.8 44 187-231 627-670 (717)
100 PRK15136 multidrug efflux syst 26.4 8.4E+02 0.018 26.3 12.6 22 188-209 94-115 (390)
101 PF07106 TBPIP: Tat binding pr 26.1 4.5E+02 0.0097 24.9 8.8 48 192-239 85-134 (169)
102 PF06156 DUF972: Protein of un 26.0 3.5E+02 0.0075 24.7 7.5 50 191-240 6-55 (107)
103 PRK10884 SH3 domain-containing 25.6 2.3E+02 0.0051 28.5 7.0 33 191-223 91-123 (206)
104 PLN03229 acetyl-coenzyme A car 24.5 1.3E+03 0.029 28.0 15.4 38 118-155 534-577 (762)
105 KOG1029 Endocytic adaptor prot 24.3 1.4E+03 0.031 28.2 16.6 46 194-239 459-504 (1118)
106 PF03962 Mnd1: Mnd1 family; I 24.0 7.1E+02 0.015 24.6 10.9 82 97-217 76-166 (188)
107 PF05278 PEARLI-4: Arabidopsis 23.9 7E+02 0.015 26.5 10.3 23 121-143 155-177 (269)
108 PF10473 CENP-F_leu_zip: Leuci 23.4 6.7E+02 0.015 24.1 17.5 45 192-236 51-95 (140)
109 COG3883 Uncharacterized protei 23.2 9.2E+02 0.02 25.6 14.1 46 96-141 51-96 (265)
110 KOG0972 Huntingtin interacting 23.2 9.4E+02 0.02 26.3 11.1 66 193-260 252-317 (384)
111 PF04156 IncA: IncA protein; 22.8 6.7E+02 0.015 23.9 14.1 41 98-138 82-122 (191)
112 TIGR02977 phageshock_pspA phag 22.6 7.8E+02 0.017 24.5 17.6 50 187-236 24-74 (219)
113 PF05546 She9_MDM33: She9 / Md 22.3 5.6E+02 0.012 26.3 8.9 109 290-410 32-150 (207)
114 PF08614 ATG16: Autophagy prot 22.3 7.4E+02 0.016 24.2 11.4 52 191-242 135-186 (194)
115 COG4372 Uncharacterized protei 21.4 1.2E+03 0.027 26.4 21.0 46 190-235 120-165 (499)
116 PF06160 EzrA: Septation ring 21.3 1.3E+03 0.027 26.5 25.4 29 360-388 472-500 (560)
117 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.1 6.5E+02 0.014 23.1 15.4 33 287-320 77-109 (132)
118 TIGR03545 conserved hypothetic 20.9 1.1E+03 0.023 27.5 11.8 37 194-230 213-249 (555)
119 PF03962 Mnd1: Mnd1 family; I 20.9 2.4E+02 0.0052 27.8 6.0 40 197-236 66-105 (188)
120 PRK04778 septation ring format 20.7 1.3E+03 0.028 26.4 21.8 44 289-333 382-425 (569)
121 KOG2264 Exostosin EXT1L [Signa 20.5 2.7E+02 0.0059 32.7 6.9 46 190-235 90-135 (907)
122 KOG0288 WD40 repeat protein Ti 20.3 9.5E+02 0.021 27.3 10.8 44 192-235 19-62 (459)
123 PF12718 Tropomyosin_1: Tropom 20.2 7.4E+02 0.016 23.4 11.0 43 194-236 22-64 (143)
124 KOG4674 Uncharacterized conser 20.2 2.2E+03 0.048 28.9 21.7 206 96-315 822-1035(1822)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=100.00 E-value=9.9e-46 Score=398.56 Aligned_cols=325 Identities=36% Similarity=0.404 Sum_probs=263.5
Q ss_pred CCCCccHHHHHHhhcCcccCCcccchhhhcCCChhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH
Q 042324 63 SPPFGSVKEAVTRFGGSESWPPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQ 142 (554)
Q Consensus 63 ~~pf~sVkeAv~~FGg~~~w~~~~~~~e~~~~~~~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lq 142 (554)
++||+|||+||++|||+++|+++ +..++....+.+|.++++++++|+++|..+|.++++||.||+.||++|++|+++|+
T Consensus 1 ~apf~SVk~Avs~FG~~~~~k~~-~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe 79 (522)
T PF05701_consen 1 SAPFESVKEAVSLFGGSIDWKKH-QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLE 79 (522)
T ss_pred CCCChHHHHHHHHcCCccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998 33355555678999999999999999999999999999999999999999999998
Q ss_pred HHHHh--------------c--cC--c--------------------hh-------------------------------
Q 042324 143 KEALK--------------C--MT--T--------------------PE------------------------------- 153 (554)
Q Consensus 143 k~a~e--------------~--~~--~--------------------~d------------------------------- 153 (554)
+.... + +. . .+
T Consensus 80 ~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~ 159 (522)
T PF05701_consen 80 KAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQ 159 (522)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77411 0 00 0 00
Q ss_pred --------------hhhhh------hhhhh-ccccCccchhhhhc-----------------------------------
Q 042324 154 --------------IKEMN------KEHQR-NFVSNNNDQQQIMV----------------------------------- 177 (554)
Q Consensus 154 --------------ikEm~------ke~~~-~~~~~~~aee~~~~----------------------------------- 177 (554)
+.+++ ++.++ .|.+|.+++++.++
T Consensus 160 aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~ 239 (522)
T PF05701_consen 160 AEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKD 239 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011 33333 57777777766551
Q ss_pred ------------------------cCCCC----CC-----CCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Q 042324 178 ------------------------GCSSP----CP-----ASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMK 224 (554)
Q Consensus 178 ------------------------~~~~~----~~-----~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELe 224 (554)
+.... .. ......++.||+++|.+|+++++|+++|+..|+||+++|+
T Consensus 240 Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 240 LESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 0124678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhhhhcccc------------cccCccchHHHHHHHHHHH-----HH
Q 042324 225 KEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSG------------FKNCSNFSQGEQLKKLADA-----SK 287 (554)
Q Consensus 225 kEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l~v~~~~------------~e~~~~s~EaEq~k~~aE~-----~k 287 (554)
++|.++.+++++ +.++++.|++|+.+|++++++|++.... ..+.++++|+++++.+++. .+
T Consensus 320 ~~K~el~~lke~--e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~ 397 (522)
T PF05701_consen 320 KEKEELERLKER--EKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEK 397 (522)
T ss_pred HHHHHHHHHHHH--HHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999996 4555559999999999999999654311 1125679999999999988 68
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-------CCCCCcccCCCcccccccchhHHH
Q 042324 288 AMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSH-------EKPSGFLLPEPEGQFSPLSFKSQK 360 (554)
Q Consensus 288 ak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~-------ess~~itls~~e~EY~~Ls~KA~E 360 (554)
++.|+++ +++.+.|+|.||++|++|++||||+|++|+++|++|+++.+ +++++||||.++ |++|++||++
T Consensus 398 ~k~E~e~-~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eE--y~~L~~ka~e 474 (522)
T PF05701_consen 398 AKEEAEQ-TKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEE--YESLSKKAEE 474 (522)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHH--HHHHHHHHHH
Confidence 8999999 99999999999999999999999999999999999998641 366889999996 9999999984
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042324 361 -------AEEEAVAEVKHSKQALEEALNRVENANRKQLAA 393 (554)
Q Consensus 361 -------KLEEa~kEvE~~K~ALeeAL~rAE~An~~KlAv 393 (554)
|+..+..||+..|.+-.++|+|.|.+.+--...
T Consensus 475 ~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~ 514 (522)
T PF05701_consen 475 AEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEER 514 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877654333
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.17 E-value=0.0001 Score=81.25 Aligned_cols=177 Identities=25% Similarity=0.244 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhhhhcc---
Q 042324 188 PDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDG--- 264 (554)
Q Consensus 188 p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l~v~~--- 264 (554)
-+++..||+.+|..|..+...+....+.|.+|+.+|.+.+.+|+..+... ..+.-.+..|...|++...+.....
T Consensus 311 vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e--~~~k~~~~~l~~~Lqql~~Eae~Ak~ea 388 (522)
T PF05701_consen 311 VESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE--EKAKEAMSELPKALQQLSSEAEEAKKEA 388 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh--cchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998853 3332367778888888777753332
Q ss_pred --cccccCccchHHHHHHHHHHH-----HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHh
Q 042324 265 --SGFKNCSNFSQGEQLKKLADA-----SKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAE-------ALALAEIKG 330 (554)
Q Consensus 265 --~~~e~~~~s~EaEq~k~~aE~-----~kak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAE-------alALaeIKa 330 (554)
...+...+..|+++.+..... .-+..|++. +|++-.-|=..|.+...-...++... .+.+.|--.
T Consensus 389 ~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea-aKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~ 467 (522)
T PF05701_consen 389 EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEA-AKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYES 467 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHH
Confidence 111122334444544444444 122344555 44443333333333222121222111 122222222
Q ss_pred hhcCCCCCCCCcccCCCcccccccchh-H-----------------HHHHHHHHHHHHHHHHHHHHHH
Q 042324 331 LSSSSHEKPSGFLLPEPEGQFSPLSFK-S-----------------QKAEEEAVAEVKHSKQALEEAL 380 (554)
Q Consensus 331 Lses~~ess~~itls~~e~EY~~Ls~K-A-----------------~EKLEEa~kEvE~~K~ALeeAL 380 (554)
|+. --.+++.++.+ + .+||+++.++|+++|+||++||
T Consensus 468 L~~-------------ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~Al 522 (522)
T PF05701_consen 468 LSK-------------KAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEAL 522 (522)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 222 11134445442 2 1499999999999999999996
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.87 E-value=5.1 Score=46.99 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=8.2
Q ss_pred cccccccHHHHHH
Q 042324 486 AERQKVALSQMLQ 498 (554)
Q Consensus 486 ~e~~kvsLgQmL~ 498 (554)
.+++.|+|+.+|.
T Consensus 1093 g~~~~~~l~~~~~ 1105 (1179)
T TIGR02168 1093 GEKALTALALLFA 1105 (1179)
T ss_pred cHHHHHHHHHHHH
Confidence 4566677776653
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.98 E-value=9.7 Score=44.99 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=28.5
Q ss_pred ccccccccHHHHHHHhhccCCCCccc-cCccCC-cccccccccc----cccccceeeeecc
Q 042324 485 PAERQKVALSQMLQELREDLSFPKKT-ENIECD-DDHQQKQFFA----QRRKFGFIHISLP 539 (554)
Q Consensus 485 ~~e~~kvsLgQmL~~~~~~~~~~~~~-e~~~~~-d~~~~kqf~~----kRkkfgF~~~s~~ 539 (554)
+.++..|+|+.+|.-.. ..++|..+ |.++.+ |...++.|.. ..+.-.||.+|+-
T Consensus 1077 gge~~~~~la~~~~~~~-~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1077 GGEKSLTALSFIFAIQR-YKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred cchHHHHHHHHHHHHHh-cCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 47888999999997532 12223222 433323 5555554322 2233457766653
No 5
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.41 E-value=2.7 Score=50.03 Aligned_cols=27 Identities=19% Similarity=0.006 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 042324 286 SKAMLVNEQSNKACIKTAEMRWVAAKKM 313 (554)
Q Consensus 286 ~kak~EaEq~tKa~i~TAE~RL~AA~Ke 313 (554)
..+++|+++ ++-++..++.|..||.+-
T Consensus 493 ~DLreEld~-~~g~~kel~~r~~aaqet 519 (1243)
T KOG0971|consen 493 LDLREELDM-AKGARKELQKRVEAAQET 519 (1243)
T ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence 356788999 888888888888877653
No 6
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.37 E-value=10 Score=41.98 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=41.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042324 97 FDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEA 145 (554)
Q Consensus 97 ~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a 145 (554)
..|+.++.+++++++.+-...-.+..|..+|.+.+..|..+.++|-.-+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999998888888888899999999999999999985433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.77 E-value=18 Score=42.57 Aligned_cols=7 Identities=43% Similarity=0.553 Sum_probs=2.9
Q ss_pred ceeeeec
Q 042324 532 GFIHISL 538 (554)
Q Consensus 532 gF~~~s~ 538 (554)
+|+.+|+
T Consensus 1144 ~~i~~sh 1150 (1179)
T TIGR02168 1144 QFIVITH 1150 (1179)
T ss_pred EEEEEEc
Confidence 3444443
No 8
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.68 E-value=3.2 Score=50.55 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh
Q 042324 192 LMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ 260 (554)
Q Consensus 192 ~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l 260 (554)
+..+++|+..++-+..|+..|....+.+...++..|..|...++.+.++.. .+.+|..+|..+..++
T Consensus 492 ~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~--~l~~~k~~l~~~k~e~ 558 (1293)
T KOG0996|consen 492 LKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKT--ELDDLKEELPSLKQEL 558 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHH
Confidence 677888888898888999999999999999999999999999888788877 8888999888776664
No 9
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.66 E-value=16 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHh
Q 042324 375 ALEEALNRVENANRKQLAAGEALI 398 (554)
Q Consensus 375 ALeeAL~rAE~An~~KlAvEeeLR 398 (554)
.-+.|++-|..|...-.-||+.|+
T Consensus 1641 ~A~~a~~~a~sa~~~A~~a~q~~~ 1664 (1758)
T KOG0994|consen 1641 EAKQAEKTAGSAKEQALSAEQGLE 1664 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.00 E-value=9.3 Score=43.54 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 042324 361 AEEEAVAEVKHSKQALEEALNRVENANRKQ 390 (554)
Q Consensus 361 KLEEa~kEvE~~K~ALeeAL~rAE~An~~K 390 (554)
-|.++..++.+.|.+|..|-+.=|.=.+-|
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~Ek 440 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEK 440 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999998888888776655444444
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.74 E-value=42 Score=39.83 Aligned_cols=8 Identities=38% Similarity=0.356 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 042324 374 QALEEALN 381 (554)
Q Consensus 374 ~ALeeAL~ 381 (554)
.|++.||.
T Consensus 539 ~Aie~~lg 546 (1164)
T TIGR02169 539 TAIEVAAG 546 (1164)
T ss_pred HHHHHHhh
Confidence 44455554
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.44 E-value=62 Score=39.82 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=28.9
Q ss_pred cccccccHHHHHHHhhccCCCCccc-cCccCC-cccccccccc----cccccceeeeec
Q 042324 486 AERQKVALSQMLQELREDLSFPKKT-ENIECD-DDHQQKQFFA----QRRKFGFIHISL 538 (554)
Q Consensus 486 ~e~~kvsLgQmL~~~~~~~~~~~~~-e~~~~~-d~~~~kqf~~----kRkkfgF~~~s~ 538 (554)
.|+.=++|.=|+.=.+ .-|+|-.+ |.|+-. |.++.++|.. ..+.+=||+||+
T Consensus 1070 GEKsLtAlAllFAi~~-~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvITh 1127 (1163)
T COG1196 1070 GEKSLTALALLFAIQK-YRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITH 1127 (1163)
T ss_pred cHHHHHHHHHHHHHHh-hCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEc
Confidence 3444455555554432 34456554 554433 7777776544 345566888875
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.80 E-value=87 Score=40.96 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042324 100 KKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEA 145 (554)
Q Consensus 100 ~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a 145 (554)
.++..+..++.+.++.+|.....+++.+......|++||.+|+.+.
T Consensus 1269 ~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~ 1314 (1930)
T KOG0161|consen 1269 SRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEET 1314 (1930)
T ss_pred HHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888889999999888999999999999999999997764
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.49 E-value=71 Score=39.30 Aligned_cols=41 Identities=39% Similarity=0.449 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHH
Q 042324 100 KKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQ 140 (554)
Q Consensus 100 ~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~ 140 (554)
..+..++..++.++...+.+-.++-.++......+++++..
T Consensus 670 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1163)
T COG1196 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ 710 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554444444444433444444444444444433
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.81 E-value=72 Score=39.77 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTS------VESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ 260 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrss------veSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l 260 (554)
+..+|++....|.+...++.++.++ +..+..++...+..++.+..++....++..+..|+.++.....++
T Consensus 763 ~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el 838 (1311)
T TIGR00606 763 LKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHEL 838 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHH
Confidence 3445666666666666666444332 244477777777777777776665544445556666666655554
No 16
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.74 E-value=24 Score=36.37 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=6.5
Q ss_pred HHHHHHhhcc
Q 042324 392 AAGEALIRWT 401 (554)
Q Consensus 392 AvEeeLRrWR 401 (554)
+-=+.+|+|-
T Consensus 178 ~~yeri~~~~ 187 (239)
T COG1579 178 SEYERIRKNK 187 (239)
T ss_pred HHHHHHHhcC
Confidence 3345688886
No 17
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.03 E-value=1.1e+02 Score=37.33 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=55.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCc-ccccc-------cchhHHHHHHHHHH
Q 042324 296 NKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFLLPEPE-GQFSP-------LSFKSQKAEEEAVA 367 (554)
Q Consensus 296 tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~ess~~itls~~e-~EY~~-------Ls~KA~EKLEEa~k 367 (554)
-+..+..||+.|---+..+.||--||++- ..|.+.+-+--..|.+=.++ ++.+. |..-.++-.-...+
T Consensus 422 Lsr~~d~aEs~iadlkEQVDAAlGAE~MV----~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLre 497 (1243)
T KOG0971|consen 422 LSRELDQAESTIADLKEQVDAALGAEEMV----EQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLRE 497 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHH----HHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777778888888888763 23443210000001110000 01111 22122234445667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcc
Q 042324 368 EVKHSKQALEEALNRVENANRKQLAAGEALIRWT 401 (554)
Q Consensus 368 EvE~~K~ALeeAL~rAE~An~~KlAvEeeLRrWR 401 (554)
||+..+-+..++..|.+.|-+--.--.+-+-|+|
T Consensus 498 Eld~~~g~~kel~~r~~aaqet~yDrdqTI~KfR 531 (1243)
T KOG0971|consen 498 ELDMAKGARKELQKRVEAAQETVYDRDQTIKKFR 531 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 7778888888889998888765555556666666
No 18
>PRK11637 AmiB activator; Provisional
Probab=83.15 E-value=74 Score=34.55 Aligned_cols=9 Identities=0% Similarity=-0.182 Sum_probs=5.6
Q ss_pred CCCCccccC
Q 042324 440 ISNPELVTD 448 (554)
Q Consensus 440 v~~~~~v~d 448 (554)
.+|.+|.+.
T Consensus 329 ~~Gi~i~~~ 337 (428)
T PRK11637 329 WKGMVIGAS 337 (428)
T ss_pred CCCEEeecC
Confidence 467776654
No 19
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.13 E-value=61 Score=33.54 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKF 241 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~ 241 (554)
.+..|+..|+-.+....+++.-|..-.+-|..++.-.+..+.+++..+.+..
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888877777777777777777777777776544433
No 20
>PRK09039 hypothetical protein; Validated
Probab=79.95 E-value=78 Score=33.91 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=70.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH---HHHHHHHhccCchhhhhhhhhhhhccccCccch
Q 042324 96 EFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKL---QLQKEALKCMTTPEIKEMNKEHQRNFVSNNNDQ 172 (554)
Q Consensus 96 ~~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~---~Lqk~a~e~~~~~dikEm~ke~~~~~~~~~~ae 172 (554)
+.+|.+++.++++|=..|......+.++-.+|...+..++.++. .|+..-. +..... ...+
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~-------------~~~~~~---~~~~ 115 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA-------------ELAGAG---AAAE 115 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhhhhc---chHH
Confidence 45677777777776666666666666665555555554443322 2221100 000000 0000
Q ss_pred hhhhccCCCCCCCCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHH
Q 042324 173 QQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEE 252 (554)
Q Consensus 173 e~~~~~~~~~~~~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaE 252 (554)
.. -.....+|.+.+.....+.-++..|+.-++.|+.+|......|+..+++..+... .+.+|..+
T Consensus 116 -~~------------~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~--~i~~L~~~ 180 (343)
T PRK09039 116 -GR------------AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQA--KIADLGRR 180 (343)
T ss_pred -HH------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 00 1224567777777777777777777777777777777777777777765433333 45555555
Q ss_pred HHH
Q 042324 253 LKQ 255 (554)
Q Consensus 253 L~k 255 (554)
|+.
T Consensus 181 L~~ 183 (343)
T PRK09039 181 LNV 183 (343)
T ss_pred HHH
Confidence 543
No 21
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.48 E-value=1.1e+02 Score=34.17 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHH
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVRE 258 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~ 258 (554)
.+..|+++-...|....++...|...+.+|++++......|.++...+..... .+..++..|+....
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~--~I~~~~~~l~~l~~ 108 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK--QIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666655555554444333 55555555554433
No 22
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.89 E-value=18 Score=36.95 Aligned_cols=158 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhhhccccCccchhhhhc
Q 042324 98 DIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNNDQQQIMV 177 (554)
Q Consensus 98 el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a~e~~~~~dikEm~ke~~~~~~~~~~aee~~~~ 177 (554)
....++.++..+++++...-+...++-.++++.+..|+.|+..-+.+...+..... ..++.+....+...+.+--..+.
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~-~~~~~e~~~~~~~dL~~~L~eiR 175 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ-SSVTVEVDQFRSSDLSAALREIR 175 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-----------------HHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc-cccceeecccccccchhhhhhHH
Q ss_pred -------------------------cCCCCCCCCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 178 -------------------------GCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLET 232 (554)
Q Consensus 178 -------------------------~~~~~~~~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~ 232 (554)
..........-..+..|+.+.+..++....++.+|+.-..+|...|......+..
T Consensus 176 ~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 176 AQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Q ss_pred HHHHHhhhhhccCCCChHHHHHHHHHhhh
Q 042324 233 TRERLTSKFASAGVPTLGEELKQVREKQQ 261 (554)
Q Consensus 233 lrEKl~e~~As~~VssLeaEL~ktr~~l~ 261 (554)
-.+ .-.+ .|..|+.+|...+..+.
T Consensus 256 ~~~---~~~~--~i~~le~el~~l~~~~~ 279 (312)
T PF00038_consen 256 ERE---EYQA--EIAELEEELAELREEMA 279 (312)
T ss_dssp HHH---HHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHH--hhhccchhHHHHHHHHH
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.74 E-value=1.2e+02 Score=35.67 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHH
Q 042324 189 DLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVRE 258 (554)
Q Consensus 189 ~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~ 258 (554)
..+..||.+.+..-+ .|+.=+-.|.....++|..+..|..||.+... .-.+||..|..-|.
T Consensus 456 r~lk~eL~qlr~ene-------~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~--~R~~lEkQL~eErk 516 (697)
T PF09726_consen 456 RSLKSELSQLRQENE-------QLQNKLQNLVQARQQDKQSLQQLEKRLAEERR--QRASLEKQLQEERK 516 (697)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 346666666666555 44555666777777777777777777666555 55666666665443
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=77.29 E-value=63 Score=32.49 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHhhccCcc
Q 042324 357 KSQKAEEEAVAEVKHSKQALEEALNRVENANRKQL-------AAGEALIRWTPDY 404 (554)
Q Consensus 357 KA~EKLEEa~kEvE~~K~ALeeAL~rAE~An~~Kl-------AvEeeLRrWR~E~ 404 (554)
++.++.+.....|.....-|.+|-.||+.|++--. -+|.+|..|+..+
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467778888889999999999999999986433 3577788887644
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.66 E-value=2.9e+02 Score=36.53 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=16.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 203 GRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 203 ~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
....+++...+.-+.+|+....+....++.+...
T Consensus 995 ~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~ 1028 (1930)
T KOG0161|consen 995 RELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT 1028 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555444444443
No 26
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=74.20 E-value=2e+02 Score=34.49 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhh
Q 042324 188 PDLILMELKQAKLNLGRTINDLGVIQTS--------VESLNKRMKKEKRMLETTRERLTS 239 (554)
Q Consensus 188 p~~i~~ELeeAK~nL~Ka~~El~sLrss--------veSLr~ELekEK~eLe~lrEKl~e 239 (554)
.+..+..|++|-...++....+...|.- .+.++.+++.-+..++.|+-.|.+
T Consensus 431 ~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsE 490 (775)
T PF10174_consen 431 EDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSE 490 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3556778888888777777776555432 233444444444444444443333
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.18 E-value=90 Score=32.95 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 193 MELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 193 ~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
.+|+.++..|.....++...|.-+..|+.++...+..++.+.+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777666666666666666666666666555555555554
No 28
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.11 E-value=99 Score=32.26 Aligned_cols=123 Identities=25% Similarity=0.276 Sum_probs=92.7
Q ss_pred cchhhhcCCChhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhhhcc
Q 042324 86 YKLAEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNF 165 (554)
Q Consensus 86 ~~~~e~~~~~~~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a~e~~~~~dikEm~ke~~~~~ 165 (554)
.++|--|.++.+|++=+++ +++.-|..+=+.||+=+.+|-..|...+++|.+|+..+.+
T Consensus 92 mK~PiGHDvEhiD~elvrk---El~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~E------------------ 150 (290)
T COG4026 92 MKIPIGHDVEHIDVELVRK---ELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKE------------------ 150 (290)
T ss_pred eccCCCCCccccCHHHHHH---HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH------------------
Confidence 4555445555556555544 5778888899999998999999999999999999753311
Q ss_pred ccCccchhhhhccCCCCCCCCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 042324 166 VSNNNDQQQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAG 245 (554)
Q Consensus 166 ~~~~~aee~~~~~~~~~~~~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~ 245 (554)
..-++.||++-.+.++...+.+..|+.--..|+..+.+.-.+..+|+.|+.+-+. .
T Consensus 151 ----------------------keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~--~ 206 (290)
T COG4026 151 ----------------------KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP--G 206 (290)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc--c
Confidence 0126778888888888888888888887778888888888888888888777777 6
Q ss_pred CCChHHHH
Q 042324 246 VPTLGEEL 253 (554)
Q Consensus 246 VssLeaEL 253 (554)
|..++.++
T Consensus 207 ~El~e~~~ 214 (290)
T COG4026 207 VELPEEEL 214 (290)
T ss_pred ccchHHHH
Confidence 66666554
No 29
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=73.02 E-value=1.6e+02 Score=32.92 Aligned_cols=126 Identities=19% Similarity=0.168 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHH
Q 042324 192 LMELKQAKLNLGRTINDLGVIQT----------------SVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQ 255 (554)
Q Consensus 192 ~~ELeeAK~nL~Ka~~El~sLrs----------------sveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~k 255 (554)
..||+.|+..|.++...+..+|. .+..|..+|.+.+.+|..|+.-+..+.. .|..|...+.-
T Consensus 248 e~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sP--qV~~l~~rI~a 325 (434)
T PRK15178 248 ENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNP--LIPRLSAKIKV 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--chhHHHHHHHH
Confidence 44555555555555555555553 7788888888888888888774455554 77777777665
Q ss_pred HHHhhhhcccccccCccchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042324 256 VREKQQIDGSGFKNCSNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLS 332 (554)
Q Consensus 256 tr~~l~v~~~~~e~~~~s~EaEq~k~~aE~~kak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLs 332 (554)
.+.++..+....-...-.. .+ .....|.|. -.....=|+..+.+|+.-.|.||.- |.-..+-|+
T Consensus 326 Le~QIa~er~kl~~~~g~~---~l------a~~laeYe~-L~le~efAe~~y~sAlaaLE~AR~E---A~RQ~~YL~ 389 (434)
T PRK15178 326 LEKQIGEQRNRLSNKLGSQ---GS------SESLSLFED-LRLQSEIAKARWESALQTLQQGKLQ---ALRERQYLL 389 (434)
T ss_pred HHHHHHHHHHHhhcCCCCC---ch------hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhee
Confidence 5444433210000000000 00 111233444 4444455777788888888877753 344445454
No 30
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.90 E-value=2.8e+02 Score=34.76 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 042324 104 EQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKE 144 (554)
Q Consensus 104 eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~ 144 (554)
.++++++..+...+.+--++..+|+.....++.++..++..
T Consensus 744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~ 784 (1311)
T TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA 784 (1311)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45666666665555555556666777777777777766543
No 31
>PRK02224 chromosome segregation protein; Provisional
Probab=69.26 E-value=2.4e+02 Score=33.25 Aligned_cols=236 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhhhccccCccchhhhhc
Q 042324 98 DIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNNDQQQIMV 177 (554)
Q Consensus 98 el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a~e~~~~~dikEm~ke~~~~~~~~~~aee~~~~ 177 (554)
+...+..++.+++..+......-..+.+++......|+.+..+|..
T Consensus 343 ~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~---------------------------------- 388 (880)
T PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEE---------------------------------- 388 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHH
Q 042324 178 GCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVR 257 (554)
Q Consensus 178 ~~~~~~~~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr 257 (554)
+..+|++.+..|..+..++..+...+..|+.++...+..+..++. .+..++.-|..+.
T Consensus 389 -------------l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~---------~~~~~~~~l~~~~ 446 (880)
T PRK02224 389 -------------LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA---------TLRTARERVEEAE 446 (880)
T ss_pred -------------HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q ss_pred Hhh-hhcccccccCccchHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Q 042324 258 EKQ-QIDGSGFKNCSNFSQGEQLKKLADA--SKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEAL------ALAEI 328 (554)
Q Consensus 258 ~~l-~v~~~~~e~~~~s~EaEq~k~~aE~--~kak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEal------ALaeI 328 (554)
..+ ....--+..+-...+...+-..... .+...+++. ....+..++.++..+....+..+.-+.+ .-..+
T Consensus 447 ~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~ 525 (880)
T PRK02224 447 ALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELED-LEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELI 525 (880)
T ss_pred HHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhcCCCCCCCCcccCCCcccccccchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 042324 329 KGLSSSSHEKPSGFLLPEPEGQFSPLSFKSQK---AEEEAVAEVKHSKQALEEALNRVENANRKQLAAGEALIR 399 (554)
Q Consensus 329 KaLses~~ess~~itls~~e~EY~~Ls~KA~E---KLEEa~kEvE~~K~ALeeAL~rAE~An~~KlAvEeeLRr 399 (554)
..+.+ .+......|..|..++.+ .+++...+-++....+.++..++......--.++.++++
T Consensus 526 ~~~~e---------~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 590 (880)
T PRK02224 526 AERRE---------TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES 590 (880)
T ss_pred HHHHH---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=68.83 E-value=2.6e+02 Score=33.58 Aligned_cols=132 Identities=19% Similarity=0.255 Sum_probs=71.7
Q ss_pred cCCcccch-hhhcCCChhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhccCchhhhhhhh
Q 042324 81 SWPPLYKL-AEYHGVGEFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNK 159 (554)
Q Consensus 81 ~w~~~~~~-~e~~~~~~~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a~e~~~~~dikEm~k 159 (554)
+|.|-.+. ...+.-+..++..++.+.-.+.-+......+--.+-.|| .+-+.+..|..++++...+..
T Consensus 36 fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e---------- 104 (775)
T PF10174_consen 36 FWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFE---------- 104 (775)
T ss_pred ccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccc----------
Confidence 78877221 112222334555556665555555444444444466677 666777777776665432110
Q ss_pred hhhhccccCccchhhhhccCCCCCCCCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042324 160 EHQRNFVSNNNDQQQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTS 239 (554)
Q Consensus 160 e~~~~~~~~~~aee~~~~~~~~~~~~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e 239 (554)
...+..-+.. .-..+..|.+.+...|....+.+.-+..-++.++..|..--.++.+|.++|+.
T Consensus 105 ----~l~~ld~~~~-------------q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~ 167 (775)
T PF10174_consen 105 ----SLQELDKAQE-------------QFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQS 167 (775)
T ss_pred ----hhhhhhhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000000000 11224556666666666666666777777777777777777788888887653
Q ss_pred h
Q 042324 240 K 240 (554)
Q Consensus 240 ~ 240 (554)
+
T Consensus 168 ~ 168 (775)
T PF10174_consen 168 K 168 (775)
T ss_pred c
Confidence 3
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.34 E-value=3.1e+02 Score=34.19 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHh
Q 042324 186 SSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREK 259 (554)
Q Consensus 186 ~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~ 259 (554)
.++..+..+|+++...|+...+....+.......+.+++.-+.++...+..+..... .+..|..+....+.+
T Consensus 600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 671 (1201)
T PF12128_consen 600 ASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQ--DLQRLKNEREQLKQE 671 (1201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHH
Confidence 355667788888888888888887777777777777777777777776664333333 444444444444443
No 34
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.30 E-value=1.1e+02 Score=35.70 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=14.5
Q ss_pred eccCCCCccHHHHHHhhcCc
Q 042324 60 IDTSPPFGSVKEAVTRFGGS 79 (554)
Q Consensus 60 iDt~~pf~sVkeAv~~FGg~ 79 (554)
.|-++|=++|+-=...||-.
T Consensus 295 tDVtp~P~~V~KiAasf~A~ 314 (652)
T COG2433 295 TDVTPAPETVKKIAASFNAV 314 (652)
T ss_pred ccCCCChHHHHHHHHHcCCc
Confidence 47777777787777777754
No 35
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=65.67 E-value=45 Score=33.58 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=63.0
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHhhHH----HHHHHhHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhhhccccCcc
Q 042324 95 GEFDIKKVEEQAAELEKDLIVKELETLD----VLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNN 170 (554)
Q Consensus 95 ~~~el~kv~eq~~ele~~l~~~E~et~~----vl~ELe~TKr~iEeLK~~Lqk~a~e~~~~~dikEm~ke~~~~~~~~~~ 170 (554)
.+-|..+|+.++++|+..|...+.+.-. .-....-.|+++|.|=-=-+++..+.
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~---------------------- 151 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLREL---------------------- 151 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhh----------------------
Confidence 4678889999999999988888777643 12233334555554421111111000
Q ss_pred chhhhhccCCCCCCCCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 171 DQQQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 171 aee~~~~~~~~~~~~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
. + ..+.+ -.||..+++|+..|+.-|+.|..=|..=+.+|..|++
T Consensus 152 -~--------~--~~~~~----------~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 152 -E--------E--GRSKS----------GKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred -h--------c--cCCCC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0 00111 1367788899999999999999999999999998864
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.57 E-value=1.4e+02 Score=31.91 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 193 MELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 193 ~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
.||+.+|..|...-.++...+...+.++.+|...+..++...++
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~ 247 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777766777777776666666666553
No 37
>PTZ00121 MAEBL; Provisional
Probab=65.15 E-value=77 Score=40.52 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042324 305 MRWVAAKKMEEAAKAAEALALAEIKGLSS 333 (554)
Q Consensus 305 ~RL~AA~Ke~EAAKAAEalALaeIKaLse 333 (554)
.|+++.++.+|+.++.|+..+.+.+-+.+
T Consensus 1188 Rr~EElRraEEaRkaEEaRRlEE~RraEE 1216 (2084)
T PTZ00121 1188 RKAEELRKAEDARKAEAARKAEEERKAEE 1216 (2084)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 36667777777777777777766665554
No 38
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.03 E-value=2.2e+02 Score=33.08 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHh
Q 042324 189 DLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREK 259 (554)
Q Consensus 189 ~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~ 259 (554)
+.+..+|.++...|--..++..+|.++..-+.++|.-.-..|+.-+| .++.++..|.++.-.
T Consensus 348 ~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkE---------ec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 348 NALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKE---------ECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHh
Confidence 34777999999999999999999999999999999999999988888 556677788776544
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=64.71 E-value=2.6e+02 Score=31.91 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTS----------VESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREK 259 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrss----------veSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~ 259 (554)
+..-|..++.+...+..|+..|+.+ +.++..+|+.....+..+.+++..... .-+.+..++.....+
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~--~ysel~e~leel~e~ 391 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEI--AYSELQEELEEILKQ 391 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 6778888888888888888888887 888888888888888887776555544 455566666554444
No 40
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.06 E-value=3.1e+02 Score=32.72 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 042324 104 EQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKE 144 (554)
Q Consensus 104 eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~ 144 (554)
.++..|+++|+..|.++..|+.-|+.+.+.++.-+..|...
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q 305 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQ 305 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888999999999988888888877777544
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.54 E-value=3.8e+02 Score=33.46 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCChHHHHHHHHHhhhhcccccc
Q 042324 192 LMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER---LTSKFASAGVPTLGEELKQVREKQQIDGSGFK 268 (554)
Q Consensus 192 ~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK---l~e~~As~~VssLeaEL~ktr~~l~v~~~~~e 268 (554)
..-|+..+.+|+.....+.-|+..++.++..|.+.+..+.....- +.+ .-+.+..-+.+++..++......
T Consensus 314 ~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke-----~~~~~s~~~e~~e~~~eslt~G~- 387 (1174)
T KOG0933|consen 314 ETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKE-----AFQEDSKLLEKAEELVESLTAGL- 387 (1174)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhccc-
Confidence 456788888999988899999998888888888888877774320 001 11223333443333333322110
Q ss_pred cCccchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 042324 269 NCSNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEA 316 (554)
Q Consensus 269 ~~~~s~EaEq~k~~aE~~kak~EaEq~tKa~i~TAE~RL~AA~Ke~EA 316 (554)
... -. ++.--..+-+.++..+-. +.+.+.++.++++-..++..-
T Consensus 388 -Ss~-~~-~e~~l~~ql~~aK~~~~~-~~t~~k~a~~k~e~~~~elk~ 431 (1174)
T KOG0933|consen 388 -SSN-ED-EEKTLEDQLRDAKITLSE-ASTEIKQAKLKLEHLRKELKL 431 (1174)
T ss_pred -ccC-cc-chhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 000 00 111111122556777777 888888888888888887654
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=62.45 E-value=3e+02 Score=31.91 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHH
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQT 214 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrs 214 (554)
+..++.+++..|.....++..|..
T Consensus 211 L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 211 LKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555444443
No 43
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=62.25 E-value=2.8e+02 Score=31.55 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHh
Q 042324 123 VLEELGTTKKIVEELKLQLQKEALK 147 (554)
Q Consensus 123 vl~ELe~TKr~iEeLK~~Lqk~a~e 147 (554)
=|++|....+.+++|...|+++..+
T Consensus 250 dle~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 250 DLEGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888899999999887643
No 44
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=61.83 E-value=1.5e+02 Score=28.35 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 042324 98 DIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKE 144 (554)
Q Consensus 98 el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~ 144 (554)
+-+.++..+--++.+|...+.....|..+.|..|+.|+.|+.+|+.-
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l 64 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL 64 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888888888888888888888888753
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=60.75 E-value=4.8e+02 Score=33.75 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=38.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042324 97 FDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEA 145 (554)
Q Consensus 97 ~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a 145 (554)
.|..+.+....+.++.|...+..-..+-.+|.....-+..|+.+++++.
T Consensus 286 EEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888877787788777888888888776653
No 46
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.70 E-value=1.2e+02 Score=36.33 Aligned_cols=58 Identities=29% Similarity=0.342 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHH
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVR 257 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr 257 (554)
+.++|..++..=..+..++...+.+-++|-..+.....++..++. .|.+|+.||.+-|
T Consensus 636 Lq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~---------Ki~~Le~Ele~er 693 (769)
T PF05911_consen 636 LQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQS---------KISSLEEELEKER 693 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 556666666666666666666666666666666666666666666 5667777776543
No 47
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=60.03 E-value=1.7e+02 Score=28.49 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhhhhccccccc---CccchHHHHHHHHHHH-HHHH
Q 042324 214 TSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSGFKN---CSNFSQGEQLKKLADA-SKAM 289 (554)
Q Consensus 214 ssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l~v~~~~~e~---~~~s~EaEq~k~~aE~-~kak 289 (554)
...++.|.+.+..+.+|+.++..+.+... .|-.|+....++|.+|...+..+.. .....-.+++...=-. .-.+
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~--evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~r 97 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEVIE--EVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLR 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888887777777 8999999999999998444322221 1111111111111111 1112
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 042324 290 LVNEQSNKACIKTAEMRWVAAKKMEEAAK 318 (554)
Q Consensus 290 ~EaEq~tKa~i~TAE~RL~AA~Ke~EAAK 318 (554)
+.-.+ -+..-...|.||.-....+|-|-
T Consensus 98 e~E~q-Lr~rRD~LErrl~~l~~tierAE 125 (159)
T PF05384_consen 98 EREKQ-LRERRDELERRLRNLEETIERAE 125 (159)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334 66667777888888877777553
No 48
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.29 E-value=1.5e+02 Score=27.37 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
...+|..++..++.+..++..++..+++.+..|...+.+...-+..
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~ 102 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQ 102 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3567777788888888888888888888888888777777666553
No 49
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=58.58 E-value=87 Score=34.05 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=44.9
Q ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh
Q 042324 199 KLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ 260 (554)
Q Consensus 199 K~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l 260 (554)
...|+|+..-+..|..-.+.|..+....+..|.+.+++.. .+|..|..+..+|.+...+|
T Consensus 251 ~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~--~~s~~V~~~t~~L~~IseeL 310 (359)
T PF10498_consen 251 SKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYK--QASEGVSERTRELAEISEEL 310 (359)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH
Confidence 3445555555577778889999999999999999999644 44558999999988765554
No 50
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=57.23 E-value=1.6e+02 Score=31.25 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042324 216 VESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 216 veSLr~ELekEK~eLe~lrE 235 (554)
..||+..+......|++|+.
T Consensus 115 ~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555554
No 51
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=56.21 E-value=2.7e+02 Score=29.41 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh
Q 042324 216 VESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ 260 (554)
Q Consensus 216 veSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l 260 (554)
+..|+.++...+..+..++.....+-. .|.+|..++...+..+
T Consensus 216 i~~L~~~l~~~~~~l~~l~~~~~~~~P--~v~~l~~~i~~l~~~i 258 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRSITPEQNP--QVPSLQARIKSLRKQI 258 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHH
Confidence 444444555555555444443222222 4444555444444443
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.83 E-value=5e+02 Score=32.46 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=18.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 042324 123 VLEELGTTKKIVEELKLQLQKEA 145 (554)
Q Consensus 123 vl~ELe~TKr~iEeLK~~Lqk~a 145 (554)
-|+.|+.+.+-..+|+.+|+-..
T Consensus 699 eL~~le~~~~kf~~l~~ql~l~~ 721 (1174)
T KOG0933|consen 699 ELKSLEAQSQKFRDLKQQLELKL 721 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888889998887554
No 53
>PTZ00121 MAEBL; Provisional
Probab=55.19 E-value=6.1e+02 Score=33.24 Aligned_cols=44 Identities=30% Similarity=0.189 Sum_probs=29.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042324 289 MLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSS 333 (554)
Q Consensus 289 k~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLse 333 (554)
+..+|. ++-.+..+-.+.++|+|-.|+|||-+..|-+++++--+
T Consensus 1321 ~kkae~-~~kka~~~~k~~e~~kk~~e~~~~~~~~~~~~~~~~~~ 1364 (2084)
T PTZ00121 1321 KKKAEE-AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364 (2084)
T ss_pred HHhHHH-HHhhhHHHHhhHHHHHhHHHhhhhhhhhhhhhhhhhhh
Confidence 445566 66666667777777777777777777777766666544
No 54
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=54.35 E-value=4e+02 Score=30.89 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhhhccccCccchhhhhccCCCCC
Q 042324 104 EQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNNDQQQIMVGCSSPC 183 (554)
Q Consensus 104 eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a~e~~~~~dikEm~ke~~~~~~~~~~aee~~~~~~~~~~ 183 (554)
.+++.+.+-+.....+...+..++...+-.+++|+.++.+.+-.+...+ ..+...
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~r--------------e~~~~~----------- 146 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAR--------------EKLDDY----------- 146 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH--------------HHHHHH-----------
Confidence 4555555555555555555888888888888888888887653321100 000000
Q ss_pred CCCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHH
Q 042324 184 PASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVRE 258 (554)
Q Consensus 184 ~~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~ 258 (554)
...+..+.+|+..+|.-+....+|+.-|+.-...|+.+|...|..++.=.- --....-.|++|-.+|.=...
T Consensus 147 -~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl--lr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 147 -LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL--LRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred -hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHh
Confidence 122445788999999999999999999998888888888888876653210 111111266777777775553
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.99 E-value=2.6e+02 Score=30.90 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 042324 181 SPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVE---SLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 181 ~~~~~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssve---SLr~ELekEK~eLe~lrEK 236 (554)
+.|.....+. ...+...+.++.....++..|..... ....++.+....+.+++.+
T Consensus 288 p~C~~~~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~ 345 (562)
T PHA02562 288 PTCTQQISEG-PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNK 345 (562)
T ss_pred CCCCCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455443332 23333333344444444444444443 3333333334444444443
No 56
>PRK11637 AmiB activator; Provisional
Probab=52.85 E-value=3.4e+02 Score=29.57 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=10.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 204 RTINDLGVIQTSVESLNKRMKKEKRML 230 (554)
Q Consensus 204 Ka~~El~sLrssveSLr~ELekEK~eL 230 (554)
.+..++..++.-+..++.+|+..+..+
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444443333
No 57
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.52 E-value=3.5e+02 Score=29.57 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASA 244 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~ 244 (554)
...|+.++...|..+....+.....|..+..+|.+...+|+.+|+.+.+..++.
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 567899999999999999999999999999999999999999999877776643
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=52.36 E-value=5.7e+02 Score=32.03 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 189 DLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRML 230 (554)
Q Consensus 189 ~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eL 230 (554)
+....|.++++.++....+...-++..++-|+..+...+...
T Consensus 347 ~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 347 DDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777776667777777776666666655
No 59
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=51.07 E-value=2.7e+02 Score=32.00 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 210 GVIQTSVESLNKRMKKEKRMLETT 233 (554)
Q Consensus 210 ~sLrssveSLr~ELekEK~eLe~l 233 (554)
..|+++++-|+++|.+|=.+|..+
T Consensus 597 ~~IQssledl~~~l~k~~~~l~~~ 620 (622)
T COG5185 597 INIQSSLEDLENELGKVIEELRNL 620 (622)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHhc
Confidence 567889999999998887776543
No 60
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.43 E-value=6.2e+02 Score=31.61 Aligned_cols=109 Identities=18% Similarity=0.156 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhhhhccccccc
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSGFKN 269 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l~v~~~~~e~ 269 (554)
-.++|+++-+.+-++++.++..|...+--+....+..+.+...|.. .++.+..+++.+-.+..-.
T Consensus 245 ~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~---------~~s~~~~~~~e~~~k~~~~------ 309 (1072)
T KOG0979|consen 245 KHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRS---------KISQKQRELNEALAKVQEK------ 309 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHH---------HHHHHHHHHHHHHHHHHHH------
Confidence 3577888888888888887776666554444433333333333333 2233334444333332110
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 042324 270 CSNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKA 319 (554)
Q Consensus 270 ~~~s~EaEq~k~~aE~~kak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKA 319 (554)
.........+.+.. +...|. .+-...--+.|+.-++||+.+|.+
T Consensus 310 ---~ek~~~~~~~v~~~--~~~le~-lk~~~~~rq~~i~~~~k~i~~~q~ 353 (1072)
T KOG0979|consen 310 ---FEKLKEIEDEVEEK--KNKLES-LKKAAEKRQKRIEKAKKMILDAQA 353 (1072)
T ss_pred ---HHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11112222333322 333444 555555567788888888887764
No 61
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.74 E-value=1.2e+02 Score=36.32 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhhhhcccccccCccchHHHHHHHHHHH--
Q 042324 208 DLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSGFKNCSNFSQGEQLKKLADA-- 285 (554)
Q Consensus 208 El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l~v~~~~~e~~~~s~EaEq~k~~aE~-- 285 (554)
|+.+|+++=-+|.++|..--..++-|+.| .+.+. -.+.++..|-.+.+..++- .-.+.-+-++..+.
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~k-neell-k~~e~q~~Enk~~~~~~~e---------kd~~l~~~kq~~d~e~ 496 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSK-NEELL-KVIENQKEENKRLRKMFQE---------KDQELLENKQQFDIET 496 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHh-HHHHH-HHHHHHHHHHHHHHHHHHH---------HHHHHHhhHHHHHHHH
Confidence 78999999999999999888888888765 22222 0222232222222211100 01122222333333
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-hhhcC
Q 042324 286 SKAMLVNEQSNKACIKTAEMRWVAAKKMEEA------AKAAEALALAEIK-GLSSS 334 (554)
Q Consensus 286 ~kak~EaEq~tKa~i~TAE~RL~AA~Ke~EA------AKAAEalALaeIK-aLses 334 (554)
.+.+.|.++ |-+.+++-.++|++|.||--. -|-||--=|.||. .|+.+
T Consensus 497 ~rik~ev~e-al~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~S 551 (861)
T PF15254_consen 497 TRIKIEVEE-ALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNS 551 (861)
T ss_pred HHHHHHHHH-HHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999 999999999999999887543 4666766677764 46554
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=47.59 E-value=6.7e+02 Score=31.47 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=85.5
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhhhhcccccccCccch
Q 042324 195 LKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSGFKNCSNFS 274 (554)
Q Consensus 195 LeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l~v~~~~~e~~~~s~ 274 (554)
+.+....|+...++..-++.-+.+|..++++.-..+++.++++.+..+ .+..+-.+-+ + ..+
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea--~i~~~~~e~~-------~---------~d~ 337 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEA--KIGELKDEVD-------A---------QDE 337 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHhhh-------h---------hhH
Confidence 333334444444455556666888888999988888888887666655 3332222222 1 134
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCccccccc
Q 042324 275 QGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFLLPEPEGQFSPL 354 (554)
Q Consensus 275 EaEq~k~~aE~~kak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~ess~~itls~~e~EY~~L 354 (554)
|.+.++.-.... +.+... .+..+..++..+.+.++....=+- -++.+++-.. ..-+..++.-+.+|..|
T Consensus 338 Ei~~~r~~~~~~--~re~~~-~~~~~~~~~n~i~~~k~~~d~l~k----~I~~~~~~~~----~~~~~~~~e~e~k~~~L 406 (1074)
T KOG0250|consen 338 EIEEARKDLDDL--RREVND-LKEEIREIENSIRKLKKEVDRLEK----QIADLEKQTN----NELGSELEERENKLEQL 406 (1074)
T ss_pred HHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----hhhhhhHHHHHHHHHHH
Confidence 555555555552 344444 555566666666665555443221 1111111110 00011122222246666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcc
Q 042324 355 SFKSQKAEEEAVAEVKHSKQALEEALNRVENANRKQLAAGEALIRWT 401 (554)
Q Consensus 355 s~KA~EKLEEa~kEvE~~K~ALeeAL~rAE~An~~KlAvEeeLRrWR 401 (554)
...+ +++++ .+...+.-+++-...+..-.+.+-.++.+++..+
T Consensus 407 ~~ev-ek~e~---~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 407 KKEV-EKLEE---QINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHH-HHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5444 44554 3344444444444444444455555666655444
No 63
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.58 E-value=63 Score=26.59 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=30.2
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 202 LGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERL 237 (554)
Q Consensus 202 L~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl 237 (554)
++..-+++..|.+.+.+++++++..+.+++++.+..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557888999999999999999999999998854
No 64
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.39 E-value=5.6e+02 Score=30.21 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhccC
Q 042324 376 LEEALNRVENANRKQLAAGEALIRWTP 402 (554)
Q Consensus 376 LeeAL~rAE~An~~KlAvEeeLRrWR~ 402 (554)
|++||.-+-.-...|.|+-.||-.++.
T Consensus 231 lEEALeTlq~EReqk~alkkEL~q~~n 257 (772)
T KOG0999|consen 231 LEEALETLQQEREQKNALKKELSQYRN 257 (772)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 555555555555566666666666654
No 65
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.81 E-value=2.9e+02 Score=33.04 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 194 ELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 194 ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
-|.+-..++++...++...+...+..+.++++.+.+++++++
T Consensus 510 ~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~ 551 (782)
T PRK00409 510 LIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKE 551 (782)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555544444
No 66
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.33 E-value=4e+02 Score=28.22 Aligned_cols=45 Identities=7% Similarity=0.254 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 192 LMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 192 ~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
-.+|.++..++..+.+++.+|..-|+.+..++...+.+..++++.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~e 81 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAE 81 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666777777777777777777777777777663
No 67
>PLN03188 kinesin-12 family protein; Provisional
Probab=42.95 E-value=5.1e+02 Score=33.06 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042324 205 TINDLGVIQTSVESLNKRMKKEKRMLETTRERLTS 239 (554)
Q Consensus 205 a~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e 239 (554)
...|+.+-|.+++-|+.||+.+|.--++|.+-++-
T Consensus 1070 lr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~ 1104 (1320)
T PLN03188 1070 LRTELDASRALAEKQKHELDTEKRCAEELKEAMQM 1104 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34577888999999999999999999999885443
No 68
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.64 E-value=1e+02 Score=25.64 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=38.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH
Q 042324 96 EFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKL 139 (554)
Q Consensus 96 ~~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~ 139 (554)
..+|.+++..--.++..|...|...-++..++...+..+++++.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45788888888889999999999999999999999999998865
No 69
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=42.01 E-value=4.2e+02 Score=27.50 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 042324 299 CIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFLLPEPEGQFSPLSFKSQKAEEEAVAEVKHSKQALEE 378 (554)
Q Consensus 299 ~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~ess~~itls~~e~EY~~Ls~KA~EKLEEa~kEvE~~K~ALee 378 (554)
.+..|=.+.+-|.-+.+||| |.++++|=..+.. ++.++... +-+.-..|-.||-+|..+-..+...-..
T Consensus 78 e~q~Aa~~yerA~~~h~aAK--e~v~laEq~l~~~------~~~~~D~~---wqEmLn~A~~kVneAE~ek~~ae~eH~~ 146 (239)
T PF05276_consen 78 EAQKAALQYERANSMHAAAK--EMVALAEQSLMSD------SNWTFDPA---WQEMLNHATQKVNEAEQEKTRAEREHQR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcC------CcccccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666666665 6677777665553 11122211 4444456667888888888888888888
Q ss_pred HHHHHHHHhhhHHHHHHHHhhcc
Q 042324 379 ALNRVENANRKQLAAGEALIRWT 401 (554)
Q Consensus 379 AL~rAE~An~~KlAvEeeLRrWR 401 (554)
.......|+..-...+..|++=.
T Consensus 147 ~~~~~~~ae~~v~~Lek~lkr~I 169 (239)
T PF05276_consen 147 RARIYNEAEQRVQQLEKKLKRAI 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877543
No 70
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.50 E-value=1.6e+02 Score=33.44 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=18.3
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHH
Q 042324 195 LKQAKLNLGRTINDLGVIQTSVES 218 (554)
Q Consensus 195 LeeAK~nL~Ka~~El~sLrssveS 218 (554)
=+-||.-+.+.++++..|+-+=.|
T Consensus 237 nk~akehv~km~kdle~Lq~aEqs 260 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEGLQRAEQS 260 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999888874433
No 71
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.62 E-value=3.8e+02 Score=26.68 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHHHHHHH-------HHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhhhccccCccc
Q 042324 99 IKKVEEQAAELEKDLIVK-------ELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNND 171 (554)
Q Consensus 99 l~kv~eq~~ele~~l~~~-------E~et~~vl~ELe~TKr~iEeLK~~Lqk~a~e~~~~~dikEm~ke~~~~~~~~~~a 171 (554)
|..++++++++++..... ..+.-.+.+-|......+++|+.+|..-
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y--------------------------- 81 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY--------------------------- 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 355667777666644333 3344445555666666666666666421
Q ss_pred hhhhhccCCCCCCCCChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042324 172 QQQIMVGCSSPCPASSPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLT 238 (554)
Q Consensus 172 ee~~~~~~~~~~~~~~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~ 238 (554)
..-..-|..+|..+..+..++..|+---+.|.....++..+-+.|..+..
T Consensus 82 -----------------~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 82 -----------------EKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01345677788888888888888888888888888888888888877633
No 72
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=39.31 E-value=4.2e+02 Score=26.71 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=39.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Q 042324 97 FDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKC 148 (554)
Q Consensus 97 ~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a~e~ 148 (554)
.+++..++.+..++..|...+...-++-.|+.+..+-|..|..+|++...++
T Consensus 8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL 59 (237)
T PF00261_consen 8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERL 59 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4677788888888888888777777788888888888888877777665443
No 73
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.88 E-value=8.9e+02 Score=30.44 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHH
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQT----------------SVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELK 254 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrs----------------sveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ 254 (554)
+..+|+.++.+|..+.+..+.+.+ .+.+|+.++.+....+.+++..-..-+. ....|+++|.
T Consensus 746 k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~--rk~~le~~l~ 823 (1200)
T KOG0964|consen 746 KGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIET--RKTALEANLN 823 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 567788888888877776655554 6778888888888888877653233333 4555666555
No 74
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=38.08 E-value=1.7e+02 Score=25.81 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTS 239 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e 239 (554)
++.||+++-|..=.....+...++++-+.|..+-.+.|.++..-++|++.
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888888888889999999999888888887653
No 75
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.16 E-value=4.8e+02 Score=31.24 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=22.9
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 195 LKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 195 LeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
+.+-+.++++...++...+.-++..+.++++.+.++++++++
T Consensus 506 ~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~ 547 (771)
T TIGR01069 506 YGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKE 547 (771)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555553
No 76
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.98 E-value=2.3e+02 Score=29.85 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFA 242 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~A 242 (554)
|..=+..+..+++.+...++.|.+--.+|..+|++-|.+|++.+.||..-.+
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666777888888888899998999999999999999999998765544
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.30 E-value=1.5e+02 Score=29.77 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhHH
Q 042324 192 LMELKQAKLNLGRTI 206 (554)
Q Consensus 192 ~~ELeeAK~nL~Ka~ 206 (554)
..||.+++..|..+.
T Consensus 99 e~el~~l~~~l~~~~ 113 (206)
T PRK10884 99 ENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 78
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.20 E-value=2e+02 Score=25.04 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSK 240 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~ 240 (554)
++.||.++-|..-+-.+.|....+.+-+.|..+-+..|.++.--++|+++-
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888889999999999999999999999999888887653
No 79
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=34.60 E-value=5.1e+02 Score=26.33 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 192 LMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 192 ~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
..++..+...-+-+..+++++-.+...|-...++.|..++-++.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~ 111 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK 111 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556677778888888888888888888877766
No 80
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=34.04 E-value=14 Score=44.14 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCcccc
Q 042324 368 EVKHSKQALEEALNRVENANRKQLAAGEALIRWTPDYDT 406 (554)
Q Consensus 368 EvE~~K~ALeeAL~rAE~An~~KlAvEeeLRrWR~E~eq 406 (554)
++.+.+.+|+++-.-.+.++.+++-++-+|-.-|.+++.
T Consensus 469 e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er 507 (859)
T PF01576_consen 469 EKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIER 507 (859)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666667778888888888888876643
No 81
>PRK12472 hypothetical protein; Provisional
Probab=34.02 E-value=4.7e+02 Score=30.07 Aligned_cols=92 Identities=22% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHH------------HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 042324 276 GEQLKKLADA------------SKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFL 343 (554)
Q Consensus 276 aEq~k~~aE~------------~kak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~ess~~it 343 (554)
++++++.+.+ +++...... +-+.+..|...|.+|+-....+||+|+..-++-++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~-a~~~l~~adk~l~~a~~d~~~~~a~~~~~~~~~~~~~----------- 273 (508)
T PRK12472 206 ADEAKTAAAAAAREAAPLKASLRKLERAKAR-ADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAE----------- 273 (508)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHH-----------
Q ss_pred cCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 042324 344 LPEPEGQFSPLSFKSQKAEEEAVAEVKHSKQALEEALNRVENANRKQLAA 393 (554)
Q Consensus 344 ls~~e~EY~~Ls~KA~EKLEEa~kEvE~~K~ALeeAL~rAE~An~~KlAv 393 (554)
|..+|+.+....+....++-.|-..+..|...|..+
T Consensus 274 --------------a~~~~~~a~~~~~~~~~~~~~~~~a~~~a~~~~~~~ 309 (508)
T PRK12472 274 --------------AATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAET 309 (508)
T ss_pred --------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH
No 82
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.73 E-value=7.1e+02 Score=29.86 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=27.3
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 195 LKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 195 LeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
++.|+..+..-..+++.+=.-.+..+.+++..+.+++++++
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~ 539 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLK 539 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766666666666666666666666666666665
No 83
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.58 E-value=7.4e+02 Score=29.73 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=27.8
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 195 LKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 195 LeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
++.|+.-+..-..+++.+=...+..+.+++..+.+++++++
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~ 544 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLK 544 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766666666666666666677777777766666
No 84
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.08 E-value=6.7e+02 Score=29.40 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETT 233 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~l 233 (554)
+-.|.++.+-+|+++..++..++..|-.++.+++.-..+++.+
T Consensus 337 mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~ 379 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKK 379 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4568888888888888888888888888887777766666555
No 85
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=32.73 E-value=5.9e+02 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHH
Q 042324 188 PDLILMELKQAKLNLGRTINDLGVIQ 213 (554)
Q Consensus 188 p~~i~~ELeeAK~nL~Ka~~El~sLr 213 (554)
+......|.++++.|..+...+..++
T Consensus 81 ~~~~~~~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 81 PRPYELTVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466788888888887776655544
No 86
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=31.84 E-value=5.8e+02 Score=26.13 Aligned_cols=48 Identities=25% Similarity=0.361 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 188 PDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 188 p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
+.....+|++++..|..+...+..+......+..++...+..++..+.
T Consensus 75 ~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~ 122 (334)
T TIGR00998 75 PTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQARE 122 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888999988888888777777666666666666666555554
No 87
>PRK04863 mukB cell division protein MukB; Provisional
Probab=31.51 E-value=1.3e+03 Score=30.10 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-hHHHHHHHHHhh
Q 042324 193 MELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPT-LGEELKQVREKQ 260 (554)
Q Consensus 193 ~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~Vss-LeaEL~ktr~~l 260 (554)
.+|.++...++.+...++.+..-.-..+..++..|..+..|.. ..-.+.+.-.. |..++..++.++
T Consensus 837 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~ 903 (1486)
T PRK04863 837 AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNR--LLPRLNLLADETLADRVEEIREQL 903 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hchhhhhcCCccHHHHHHHHHHHH
Confidence 4677777788888888899999999999999999999988877 44444434333 677777666665
No 88
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=31.51 E-value=2.1e+02 Score=26.38 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=35.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042324 97 FDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEA 145 (554)
Q Consensus 97 ~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a 145 (554)
+.+.+.+-...-.+.+...-+...-.+..+++.++..|++||.+|+.+.
T Consensus 60 ~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 60 FSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444556666666777788999999999999999998764
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.31 E-value=9.1e+02 Score=28.26 Aligned_cols=11 Identities=18% Similarity=0.168 Sum_probs=6.5
Q ss_pred CCCCCCcccce
Q 042324 20 EPVPGTPGIRE 30 (554)
Q Consensus 20 ~~~~~~~~~~~ 30 (554)
-.+||.|-+--
T Consensus 143 l~~pwvP~~cr 153 (594)
T PF05667_consen 143 LKAPWVPPFCR 153 (594)
T ss_pred ccCCCCChhhc
Confidence 34677776543
No 90
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.85 E-value=9.4e+02 Score=28.27 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=12.5
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 042324 96 EFDIKKVEEQAAELEKDLI 114 (554)
Q Consensus 96 ~~el~kv~eq~~ele~~l~ 114 (554)
+.|+.+++.+..+|++.+.
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776443
No 91
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=30.84 E-value=31 Score=31.05 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=14.8
Q ss_pred ccCCCCccHHHHHHhh
Q 042324 61 DTSPPFGSVKEAVTRF 76 (554)
Q Consensus 61 Dt~~pf~sVkeAv~~F 76 (554)
|+..||.|+..||.|-
T Consensus 16 D~~tPF~s~~DA~~RL 31 (109)
T PF15249_consen 16 DYKTPFRSLEDAVERL 31 (109)
T ss_pred CcCCCCCCHHHHHHHh
Confidence 8899999999999984
No 92
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=29.95 E-value=2.1e+02 Score=26.94 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHhhH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 188 PDLILMELKQAKLNLGRT----INDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 188 p~~i~~ELeeAK~nL~Ka----~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
|-+|.-||.+|+.|..|- ..|+..+-+...-+..++.+.+..+..+++
T Consensus 60 pvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 60 PVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999998874 447777777777778888888888887776
No 93
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.28 E-value=6.4e+02 Score=25.87 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASA 244 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~ 244 (554)
+-.++.++...+.....+...--.=+..|+.++...+..+.+.+++|...+++.
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567777777777777777666667788999999999999999999876666643
No 94
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=29.17 E-value=9.7e+02 Score=27.93 Aligned_cols=68 Identities=13% Similarity=0.262 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ 260 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l 260 (554)
.+..|+++.....++..++.-|+.-++.|+..+++--..+...++++..... .+++|++|+.-.+...
T Consensus 97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~--~l~~leAe~~~~krr~ 164 (546)
T KOG0977|consen 97 ARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLS--RLSELEAEINTLKRRI 164 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh--hhhhhhhHHHHHHHHH
Confidence 4555555555555666666666666777777777776677777777776666 7888888888766654
No 95
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=28.82 E-value=1.1e+03 Score=28.26 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042324 217 ESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 217 eSLr~ELekEK~eLe~lrE 235 (554)
..|..++++.|.+|...|+
T Consensus 421 ~rLE~dvkkLraeLq~~Rq 439 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQ 439 (697)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3677777777777777766
No 96
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.76 E-value=3.6e+02 Score=32.45 Aligned_cols=158 Identities=19% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh---hhcccccccCccchHHHHHHHHHHH---HHHHHHHHhhhhhh
Q 042324 226 EKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ---QIDGSGFKNCSNFSQGEQLKKLADA---SKAMLVNEQSNKAC 299 (554)
Q Consensus 226 EK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l---~v~~~~~e~~~~s~EaEq~k~~aE~---~kak~EaEq~tKa~ 299 (554)
+..+|+++.+ .|.-|+..|..-.+.+ +++....+...+++..+-++..++. +-.++|+-| .
T Consensus 344 ~q~eLdK~~~---------~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~Q----R 410 (961)
T KOG4673|consen 344 VQLELDKTKK---------EIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQ----R 410 (961)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHH----H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCCCCcccCCCcccccccchhHH------HHHHHHHHHHH-
Q 042324 300 IKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSH--EKPSGFLLPEPEGQFSPLSFKSQ------KAEEEAVAEVK- 370 (554)
Q Consensus 300 i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~--ess~~itls~~e~EY~~Ls~KA~------EKLEEa~kEvE- 370 (554)
+.|+|.+..|+-|+-.|+|---.---.++.+-..+.. +..-.|.--..| -+.|+++-. +||-+-.++-+
T Consensus 411 va~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~E--GEkLSK~ql~qs~iIkKLRAk~ke~et 488 (961)
T KOG4673|consen 411 VATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAE--GEKLSKKQLAQSAIIKKLRAKIKEAET 488 (961)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred -HHHHH-----HHHHHHHHHHHhhhHHHHHHHHh
Q 042324 371 -HSKQA-----LEEALNRVENANRKQLAAGEALI 398 (554)
Q Consensus 371 -~~K~A-----LeeAL~rAE~An~~KlAvEeeLR 398 (554)
.-|.. |+.-+++.+.--++|-++|.-++
T Consensus 489 l~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~ 522 (961)
T KOG4673|consen 489 LEEKKGELITKLQSEENKLKSILRDKEETEKLLQ 522 (961)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
No 97
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.70 E-value=1.4e+02 Score=28.36 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=16.3
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 195 LKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRML 230 (554)
Q Consensus 195 LeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eL 230 (554)
|.+-...|....+++..|+..+-+|+.+|......+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333344444554445444444444444444433
No 98
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.48 E-value=1.5e+03 Score=29.31 Aligned_cols=16 Identities=44% Similarity=0.310 Sum_probs=8.5
Q ss_pred CCCccHHHHHHhhcCc
Q 042324 64 PPFGSVKEAVTRFGGS 79 (554)
Q Consensus 64 ~pf~sVkeAv~~FGg~ 79 (554)
.-|-|-..||++-|+-
T Consensus 1398 cGg~sC~Ga~t~A~~A 1413 (1758)
T KOG0994|consen 1398 CGGLSCRGAVTRAGGA 1413 (1758)
T ss_pred ccCccccchhcccchH
Confidence 3445555566665553
No 99
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.45 E-value=4.9e+02 Score=31.00 Aligned_cols=44 Identities=30% Similarity=0.430 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 187 SPDLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLE 231 (554)
Q Consensus 187 ~p~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe 231 (554)
.|.+...| .+-+..|+...+.+..++.+++.++.++++.+..++
T Consensus 627 ~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 627 LPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred CCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45455566 455556777777778888889888888888776555
No 100
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=26.42 E-value=8.4e+02 Score=26.30 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHhhHHhHH
Q 042324 188 PDLILMELKQAKLNLGRTINDL 209 (554)
Q Consensus 188 p~~i~~ELeeAK~nL~Ka~~El 209 (554)
|......|++|+++|..+...+
T Consensus 94 ~~~~~~~l~~A~a~l~~a~~~~ 115 (390)
T PRK15136 94 PTDAEQAFEKAKTALANSVRQT 115 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888887655443
No 101
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.11 E-value=4.5e+02 Score=24.95 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 042324 192 LMELKQAKLNLGRTINDLGVIQT--SVESLNKRMKKEKRMLETTRERLTS 239 (554)
Q Consensus 192 ~~ELeeAK~nL~Ka~~El~sLrs--sveSLr~ELekEK~eLe~lrEKl~e 239 (554)
..+|.+.+..+.....+++.|.+ +.+-|...+...+.++..+..||..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556666555 4455666666666666666665543
No 102
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.96 E-value=3.5e+02 Score=24.75 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSK 240 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~ 240 (554)
|..-|.+...+|..+..++..|+..+..|-.|=...+.+...||++|.+.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888889999999999999999999999999999999999986654
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.62 E-value=2.3e+02 Score=28.52 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRM 223 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~EL 223 (554)
+..-|.+.+..|.+++++++.++........+|
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l 123 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEM 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456667777777777777777765544333333
No 104
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=24.46 E-value=1.3e+03 Score=27.96 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=23.6
Q ss_pred HhhHHHHHHHhHHHHHHH------HHHHHHHHHHHhccCchhhh
Q 042324 118 LETLDVLEELGTTKKIVE------ELKLQLQKEALKCMTTPEIK 155 (554)
Q Consensus 118 ~et~~vl~ELe~TKr~iE------eLK~~Lqk~a~e~~~~~dik 155 (554)
.++++.|++.-..|.+-+ +|+..|-+...++|..|+++
T Consensus 534 k~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~k 577 (762)
T PLN03229 534 KYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIK 577 (762)
T ss_pred HHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHH
Confidence 467777887776554443 56666666666666655543
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.31 E-value=1.4e+03 Score=28.22 Aligned_cols=46 Identities=9% Similarity=0.262 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042324 194 ELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTS 239 (554)
Q Consensus 194 ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e 239 (554)
-|.+.+.-++..+.++..++...+...+++...+..|-+++++|..
T Consensus 459 kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 459 KLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred hhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555556666666666666666666666666666655443
No 106
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.03 E-value=7.1e+02 Score=24.61 Aligned_cols=82 Identities=28% Similarity=0.371 Sum_probs=50.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHH------HhhHHHHHHHhHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhhhccccCcc
Q 042324 97 FDIKKVEEQAAELEKDLIVKE------LETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPEIKEMNKEHQRNFVSNNN 170 (554)
Q Consensus 97 ~el~kv~eq~~ele~~l~~~E------~et~~vl~ELe~TKr~iEeLK~~Lqk~a~e~~~~~dikEm~ke~~~~~~~~~~ 170 (554)
.++..++..+.+++..+.... -+...++++|+..+..+..|+.+|++-.
T Consensus 76 ~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~------------------------- 130 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYS------------------------- 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 345555555555555444332 2333467777777777777776665210
Q ss_pred chhhhhccCCCCCCCCChH---HHHHHHHHHHHHHhhHHhHHHHHHHHHH
Q 042324 171 DQQQIMVGCSSPCPASSPD---LILMELKQAKLNLGRTINDLGVIQTSVE 217 (554)
Q Consensus 171 aee~~~~~~~~~~~~~~p~---~i~~ELeeAK~nL~Ka~~El~sLrssve 217 (554)
...|. .+..++..++..+++-||.+.+|++-+.
T Consensus 131 --------------~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 131 --------------ENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred --------------hcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 01232 3477888888999999999888887553
No 107
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.90 E-value=7e+02 Score=26.54 Aligned_cols=23 Identities=26% Similarity=0.435 Sum_probs=19.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 042324 121 LDVLEELGTTKKIVEELKLQLQK 143 (554)
Q Consensus 121 ~~vl~ELe~TKr~iEeLK~~Lqk 143 (554)
..+|..|++.+=-|..|+.+|..
T Consensus 155 ~~~l~DLesa~vkV~WLR~~L~E 177 (269)
T PF05278_consen 155 IATLKDLESAKVKVDWLRSKLEE 177 (269)
T ss_pred HHHHHHHHHcCcchHHHHHHHHH
Confidence 34899999999999999999865
No 108
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.37 E-value=6.7e+02 Score=24.08 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 192 LMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 192 ~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
..++...+..|+.++.+++.|..=..+|+.+-+..-..+...++|
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666666666666666666666666666663
No 109
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.19 E-value=9.2e+02 Score=25.61 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=28.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHH
Q 042324 96 EFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQL 141 (554)
Q Consensus 96 ~~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~L 141 (554)
+-+|+.+..++.++.........+--.+-.|+..++..|++|+.++
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655555544444456667777777777777776
No 110
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=23.18 E-value=9.4e+02 Score=26.33 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh
Q 042324 193 MELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ 260 (554)
Q Consensus 193 ~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l 260 (554)
.--++-...|+|+..-..+|.+-.++|=.+.......|.++|+| .+-++..|++-.+.|+..--++
T Consensus 252 klh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~--y~q~~~gv~~rT~~L~eVm~e~ 317 (384)
T KOG0972|consen 252 KLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREK--YKQASVGVSSRTETLDEVMDEI 317 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccHHHHHHHHHHHHHHH
Confidence 33455667788888888899999999999999999999999995 5666679999999998765543
No 111
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.79 E-value=6.7e+02 Score=23.88 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHH
Q 042324 98 DIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELK 138 (554)
Q Consensus 98 el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK 138 (554)
++...+.+..++.+++..-+....++..+|...+.....+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44555555555555554444444444444444444444444
No 112
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.58 E-value=7.8e+02 Score=24.54 Aligned_cols=50 Identities=12% Similarity=0.215 Sum_probs=31.2
Q ss_pred ChH-HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 187 SPD-LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 187 ~p~-~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
.|. ++..=+.+....|.++...++.+.+.--.|..+++...........+
T Consensus 24 DP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 24 DPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354 45444455555677777777766666667777776666666666553
No 113
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.32 E-value=5.6e+02 Score=26.28 Aligned_cols=109 Identities=28% Similarity=0.249 Sum_probs=64.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhcCCCCCCCCcccCCCcccccccchhHHHHH
Q 042324 290 LVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALA-------EIKGLSSSSHEKPSGFLLPEPEGQFSPLSFKSQKAE 362 (554)
Q Consensus 290 ~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALa-------eIKaLses~~ess~~itls~~e~EY~~Ls~KA~EKL 362 (554)
.+||+ -|..+...|.+|.+++...-.||++=..|++ |+..|..+.+. --.-..+. |.+|.+.=+
T Consensus 32 s~Ie~-LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s---Ws~~DleR--FT~Lyr~dH--- 102 (207)
T PF05546_consen 32 SEIEK-LKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS---WSPADLER--FTELYRNDH--- 102 (207)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CChHHHHH--HHHHHHhhh---
Confidence 56888 8889999999999999999999988877776 45555543221 10111232 666766555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCc---ccccccc
Q 042324 363 EEAVAEVKHSKQALEEALNRVENANRKQLAAGEALIRWTPD---YDTIKRT 410 (554)
Q Consensus 363 EEa~kEvE~~K~ALeeAL~rAE~An~~KlAvEeeLRrWR~E---~eqrrra 410 (554)
....++.+.|.++.+|=..++.+...= ...-|.|..+| +|..|++
T Consensus 103 -~~e~~e~~ak~~l~~aE~~~e~~~~~L--~~~Il~RYHEEQiWSDKIRr~ 150 (207)
T PF05546_consen 103 -ENEQAEEEAKEALEEAEEKVEEAFDDL--MRAILTRYHEEQIWSDKIRRA 150 (207)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhH
Confidence 344444555555555554444433321 23345555544 4566665
No 114
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.25 E-value=7.4e+02 Score=24.17 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFA 242 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~A 242 (554)
...+|++=...++-..||+.+|+.-...|..++.+.+.+...|=+|....+.
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888999999999999999999999999999887665554
No 115
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.36 E-value=1.2e+03 Score=26.40 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
.+..++.+|+.|+-|+-.|+.-+..-.--|+++|..+-..-..+-+
T Consensus 120 ~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~a 165 (499)
T COG4372 120 AVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEA 165 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999887776655544
No 116
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.34 E-value=1.3e+03 Score=26.53 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042324 360 KAEEEAVAEVKHSKQALEEALNRVENANR 388 (554)
Q Consensus 360 EKLEEa~kEvE~~K~ALeeAL~rAE~An~ 388 (554)
..|+.+...|+.....+..-+..|..++.
T Consensus 472 ~~l~~a~~~v~~L~~~t~~li~~A~L~E~ 500 (560)
T PF06160_consen 472 KQLEEAEDDVETLEEKTEELIDNATLAEQ 500 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888888888888888888888887765
No 117
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.13 E-value=6.5e+02 Score=23.14 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 042324 287 KAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAA 320 (554)
Q Consensus 287 kak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAA 320 (554)
.++.+++. ++..+...+..|..-+.+.+.-...
T Consensus 77 ~l~~~~~~-a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 77 ELKAEAES-AKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33566666 7777777777777777666655443
No 118
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.86 E-value=1.1e+03 Score=27.47 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 194 ELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRML 230 (554)
Q Consensus 194 ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eL 230 (554)
++.+++..++++..+....+..+.+|+.+|...+..+
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~ 249 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQL 249 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5666666777777777776666777766666655544
No 119
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.85 E-value=2.4e+02 Score=27.84 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=22.7
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 197 QAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 197 eAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
.-+..+++...++..++.....|+.+|+..+..-....+|
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR 105 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEER 105 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 3344455555566666666666666666666555554443
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.75 E-value=1.3e+03 Score=26.40 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=25.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042324 289 MLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSS 333 (554)
Q Consensus 289 k~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLse 333 (554)
..+.+. ....+.+.+........++..-+..|.-|...++.+..
T Consensus 382 ~e~lee-l~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~ 425 (569)
T PRK04778 382 QEELEE-ILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRN 425 (569)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 44555555555566666666666667666665555543
No 121
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.45 E-value=2.7e+02 Score=32.75 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
+|..||-|....-++...|+.-|+.-.|-|+..|.+.+.+|.+|+-
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 3677777777777777788888888889999999999888888876
No 122
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.29 E-value=9.5e+02 Score=27.30 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 192 LMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 192 ~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
-.+|.|....-.....+...+++...+++..+..--.+|.+|++
T Consensus 19 ~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~ 62 (459)
T KOG0288|consen 19 NTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQE 62 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666777777777777777777777777776
No 123
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.24 E-value=7.4e+02 Score=23.44 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 194 ELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 194 ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
.++++.......-.++.+|..=+..|-.++++....|..++.+
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555554445555555555544444444
No 124
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=20.16 E-value=2.2e+03 Score=28.89 Aligned_cols=206 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhccCchh-hhhhhhhhhhccccCccchhh
Q 042324 96 EFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEALKCMTTPE-IKEMNKEHQRNFVSNNNDQQQ 174 (554)
Q Consensus 96 ~~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a~e~~~~~d-ikEm~ke~~~~~~~~~~aee~ 174 (554)
+.....+++-+..+..+|.-+-.---.+..++.++...|..+.-.+++...++....- |+.+.-....-++...+-+..
T Consensus 822 q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~ 901 (1822)
T KOG4674|consen 822 QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDAT 901 (1822)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhh
Q ss_pred hhccCCCCCCCCChHHHHHHHHHH---HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhccCCC
Q 042324 175 IMVGCSSPCPASSPDLILMELKQA---KLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTR----ERLTSKFASAGVP 247 (554)
Q Consensus 175 ~~~~~~~~~~~~~p~~i~~ELeeA---K~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lr----EKl~e~~As~~Vs 247 (554)
.. ++.+..++.++ +..|..+...+.-++..+.++-.=|+.++..|+.++ .++..... .+.
T Consensus 902 ~~-----------~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~--k~t 968 (1822)
T KOG4674|consen 902 IL-----------EDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHK--KIT 968 (1822)
T ss_pred hh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHH
Q ss_pred ChHHHHHHHHHhhhhcccccccCccchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 042324 248 TLGEELKQVREKQQIDGSGFKNCSNFSQGEQLKKLADASKAMLVNEQSNKACIKTAEMRWVAAKKMEE 315 (554)
Q Consensus 248 sLeaEL~ktr~~l~v~~~~~e~~~~s~EaEq~k~~aE~~kak~EaEq~tKa~i~TAE~RL~AA~Ke~E 315 (554)
+|+.+|.....+...............|.+-+.-..+-.-+..|... ....+.+|...+.-.+-..+
T Consensus 969 slE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~-~~~~~s~~~~~~~~~k~dl~ 1035 (1822)
T KOG4674|consen 969 SLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKS-LLKAASQANEQIEDLQNDLK 1035 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Done!