Query 042324
Match_columns 554
No_of_seqs 143 out of 156
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 95.0 0.57 1.9E-05 45.8 15.4 92 290-401 97-188 (256)
2 1i84_S Smooth muscle myosin he 92.3 0.55 1.9E-05 55.1 11.1 9 66-74 745-753 (1184)
3 1i84_S Smooth muscle myosin he 91.3 0.36 1.2E-05 56.6 8.1 46 97-142 857-902 (1184)
4 3vkg_A Dynein heavy chain, cyt 90.3 2.7 9.3E-05 54.5 15.0 46 97-142 1934-1979(3245)
5 3na7_A HP0958; flagellar bioge 86.8 24 0.00082 34.3 20.2 115 191-329 37-156 (256)
6 2dfs_A Myosin-5A; myosin-V, in 81.8 36 0.0012 40.0 17.4 8 134-141 930-937 (1080)
7 3vkg_A Dynein heavy chain, cyt 81.0 76 0.0026 41.8 21.0 45 360-404 2049-2093(3245)
8 2v71_A Nuclear distribution pr 76.8 32 0.0011 33.0 12.4 74 64-144 3-82 (189)
9 3ol1_A Vimentin; structural ge 76.0 41 0.0014 29.6 13.3 45 101-145 17-61 (119)
10 1c1g_A Tropomyosin; contractIl 71.6 57 0.0019 29.3 28.1 44 98-141 14-57 (284)
11 3mq7_A Bone marrow stromal ant 67.5 18 0.00061 32.6 7.7 41 190-230 29-69 (121)
12 3oja_B Anopheles plasmodium-re 66.5 55 0.0019 34.5 12.7 68 191-260 507-574 (597)
13 3oja_B Anopheles plasmodium-re 61.0 78 0.0027 33.3 12.6 48 290-338 537-584 (597)
14 3ni0_A Bone marrow stromal ant 55.0 56 0.0019 28.5 8.3 41 190-230 22-62 (99)
15 3hnw_A Uncharacterized protein 51.5 1.3E+02 0.0046 27.1 10.8 24 119-142 62-85 (138)
16 3swk_A Vimentin; cytoskeleton, 50.2 1.1E+02 0.0038 25.5 9.4 41 106-146 2-42 (86)
17 3tnu_B Keratin, type II cytosk 48.0 95 0.0033 27.3 9.1 65 191-260 34-98 (129)
18 3hnw_A Uncharacterized protein 47.1 50 0.0017 29.9 7.2 32 204-235 86-117 (138)
19 2dfs_A Myosin-5A; myosin-V, in 46.6 3.6E+02 0.012 31.8 16.0 42 100-141 924-969 (1080)
20 1c1g_A Tropomyosin; contractIl 46.0 1.6E+02 0.0056 26.2 29.6 36 363-398 226-261 (284)
21 3tnu_A Keratin, type I cytoske 45.6 35 0.0012 30.2 5.9 65 191-260 36-100 (131)
22 3htk_A Structural maintenance 42.2 54 0.0018 24.9 5.7 33 191-223 24-56 (60)
23 2jee_A YIIU; FTSZ, septum, coi 41.4 1.1E+02 0.0039 25.7 8.0 49 191-239 25-73 (81)
24 3mq9_A Bone marrow stromal ant 37.9 76 0.0026 32.6 7.9 65 190-259 401-465 (471)
25 2q6q_A Spindle POLE BODY compo 37.4 32 0.0011 28.4 3.9 53 200-254 10-62 (74)
26 2w83_C C-JUN-amino-terminal ki 27.5 1.7E+02 0.0057 24.6 6.6 54 193-255 19-76 (77)
27 3htk_A Structural maintenance 25.7 1.7E+02 0.0059 22.0 6.1 42 194-235 6-47 (60)
28 3ghg_A Fibrinogen alpha chain; 25.4 3E+02 0.01 30.4 10.0 31 205-235 107-138 (562)
29 1wt6_A Myotonin-protein kinase 23.8 1.9E+02 0.0066 24.4 6.4 43 96-138 30-72 (81)
30 1m1j_C Fibrinogen gamma chain; 22.8 6.9E+02 0.024 26.3 12.7 27 115-143 40-66 (409)
31 3u59_A Tropomyosin beta chain; 20.8 3.2E+02 0.011 23.0 7.4 68 189-256 26-98 (101)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.05 E-value=0.57 Score=45.83 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=46.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCCcccccccchhHHHHHHHHHHHH
Q 042324 290 LVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEKPSGFLLPEPEGQFSPLSFKSQKAEEEAVAEV 369 (554)
Q Consensus 290 ~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~ess~~itls~~e~EY~~Ls~KA~EKLEEa~kEv 369 (554)
.|++. .+..+..+|.++..+...+++.++.-.-+-+.+..+.. ++..+.......+.+..+++
T Consensus 97 kEie~-~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~----------------~l~~~~~~~~~~~~e~~~e~ 159 (256)
T 3na7_A 97 IEEDI-AKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK----------------LALELESLVENEVKNIKETQ 159 (256)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 34555 55556666666666666666655544444444443332 13334444445566666665
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcc
Q 042324 370 KHSKQALEEALNRVENANRKQLAAGEALIRWT 401 (554)
Q Consensus 370 E~~K~ALeeAL~rAE~An~~KlAvEeeLRrWR 401 (554)
......-+...... ...=++.=+-+|+|+
T Consensus 160 ~~l~~~r~~l~~~i---~~~lL~~Yerir~~~ 188 (256)
T 3na7_A 160 QIIFKKKEDLVEKT---EPKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHTS---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 54443322222221 234455556688886
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.27 E-value=0.55 Score=55.11 Aligned_cols=9 Identities=33% Similarity=0.276 Sum_probs=4.9
Q ss_pred CccHHHHHH
Q 042324 66 FGSVKEAVT 74 (554)
Q Consensus 66 f~sVkeAv~ 74 (554)
|.+.|.++.
T Consensus 745 ~~d~k~~~~ 753 (1184)
T 1i84_S 745 FMDGKQACI 753 (1184)
T ss_dssp CCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 445566554
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.28 E-value=0.36 Score=56.64 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH
Q 042324 97 FDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQ 142 (554)
Q Consensus 97 ~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lq 142 (554)
.++..+++++.+++..+...+..--.+-.++......+++|+.+|+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667766666655544433444445555555555555443
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.26 E-value=2.7 Score=54.52 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH
Q 042324 97 FDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQ 142 (554)
Q Consensus 97 ~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lq 142 (554)
...+.++.++.+.+..|..+..++-.+++++...+.+.++-|...+
T Consensus 1934 ~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~ 1979 (3245)
T 3vkg_A 1934 AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDAR 1979 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777778888888887788888777666666554443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.84 E-value=24 Score=34.30 Aligned_cols=115 Identities=6% Similarity=0.060 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhhhhcccccccC
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQQIDGSGFKNC 270 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l~v~~~~~e~~ 270 (554)
+..++...+..+..+..++..++..+..+..+++..+.-+.+.+.++......-...+|.
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~-------------------- 96 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLN-------------------- 96 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHH--------------------
Confidence 344555555555555555555555555566666666666655555543322211122222
Q ss_pred ccchHHHHHHHHHHH-----HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 271 SNFSQGEQLKKLADA-----SKAMLVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIK 329 (554)
Q Consensus 271 ~~s~EaEq~k~~aE~-----~kak~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIK 329 (554)
.|.+.++..... .+++..++. .+..+..++.++.......++.++.=.-++++++
T Consensus 97 ---kEie~~~~~i~~lE~eile~~e~ie~-~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~ 156 (256)
T 3na7_A 97 ---IEEDIAKERSNQANREIENLQNEIKR-KSEKQEDLKKEMLELEKLALELESLVENEVKNIK 156 (256)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333322222 345556666 6666666666666666666666655555555544
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.78 E-value=36 Score=40.02 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 042324 134 VEELKLQL 141 (554)
Q Consensus 134 iEeLK~~L 141 (554)
|++|..+|
T Consensus 930 l~eLq~rL 937 (1080)
T 2dfs_A 930 IMQLQRKI 937 (1080)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33444444
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.00 E-value=76 Score=41.77 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCcc
Q 042324 360 KAEEEAVAEVKHSKQALEEALNRVENANRKQLAAGEALIRWTPDY 404 (554)
Q Consensus 360 EKLEEa~kEvE~~K~ALeeAL~rAE~An~~KlAvEeeLRrWR~E~ 404 (554)
.+.+++..+.+.++.-.+.+-.+-+.|+.==-+...|--||...-
T Consensus 2049 ~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2049 EEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 355566666666677777777777777776667788888998643
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.76 E-value=32 Score=33.04 Aligned_cols=74 Identities=28% Similarity=0.394 Sum_probs=42.2
Q ss_pred CCCccHHHHHHhhcCcccCCcc-cchhh-hcCCChhhhhhHH----HHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Q 042324 64 PPFGSVKEAVTRFGGSESWPPL-YKLAE-YHGVGEFDIKKVE----EQAAELEKDLIVKELETLDVLEELGTTKKIVEEL 137 (554)
Q Consensus 64 ~pf~sVkeAv~~FGg~~~w~~~-~~~~e-~~~~~~~el~kv~----eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeL 137 (554)
+-|.|+.+.|. +|+.. ..... +.. .+.++...+ +-=++|+.+|...+...-++...+...+..++.+
T Consensus 3 ~~f~s~~ee~~------ywk~~~~~~~q~~~~-le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~ 75 (189)
T 2v71_A 3 MDFSSLKEETA------YWKELSMKYKQSFQE-ARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEAL 75 (189)
T ss_dssp -CCSSHHHHHH------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899998875 57664 11111 110 122333333 3334555666667777777777777777777777
Q ss_pred HHHHHHH
Q 042324 138 KLQLQKE 144 (554)
Q Consensus 138 K~~Lqk~ 144 (554)
|.+++..
T Consensus 76 k~K~~~~ 82 (189)
T 2v71_A 76 KEKLEHQ 82 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777543
No 9
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.00 E-value=41 Score=29.57 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042324 101 KVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEA 145 (554)
Q Consensus 101 kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a 145 (554)
-.+..+..|.+++.....++..+.-||...+..++++|.+.+.+.
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~ 61 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345778888888888888999999999999999999999999765
No 10
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=71.63 E-value=57 Score=29.30 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHH
Q 042324 98 DIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELKLQL 141 (554)
Q Consensus 98 el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~L 141 (554)
+++.+..+..+++..+...+..--.+-.++...+..++.+...+
T Consensus 14 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (284)
T 1c1g_A 14 DKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL 57 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444554444444433333333444444444444444333
No 11
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=67.48 E-value=18 Score=32.57 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRML 230 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eL 230 (554)
++..+|-+|...|..+..+.++-...|..|+.-|+++|.--
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~ 69 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999998874
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.52 E-value=55 Score=34.49 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ 260 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l 260 (554)
+..+.++.+...+....++..++..++.++.++++.+.+.++++.++.+... .+..|..|+...+.++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~--~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRA--KQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhh--HHHHHHHHHHHHHHHH
Confidence 4444555555555555555555556666666666555555555555444444 4455555555555554
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.05 E-value=78 Score=33.30 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=29.7
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 042324 290 LVNEQSNKACIKTAEMRWVAAKKMEEAAKAAEALALAEIKGLSSSSHEK 338 (554)
Q Consensus 290 ~EaEq~tKa~i~TAE~RL~AA~Ke~EAAKAAEalALaeIKaLses~~es 338 (554)
++.++ -+..+...|.++...++..+..+--=....++||.|.+...+.
T Consensus 537 ~~~~~-~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 537 KETED-LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cchhh-HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444 4455556666666666666666655556678999998754443
No 14
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=54.97 E-value=56 Score=28.48 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRML 230 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eL 230 (554)
.+..+|-+|-..|..+..+.+.-.-.|..|+.-|+++|.--
T Consensus 22 lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~ 62 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQA 62 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999999999999999999999998874
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.51 E-value=1.3e+02 Score=27.10 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=13.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Q 042324 119 ETLDVLEELGTTKKIVEELKLQLQ 142 (554)
Q Consensus 119 et~~vl~ELe~TKr~iEeLK~~Lq 142 (554)
.-|.+..||-..++.++.|..+++
T Consensus 62 aALNiadEl~k~~~~~~~L~~~l~ 85 (138)
T 3hnw_A 62 MYLNIADDYFKAKKMADSLSLDIE 85 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655554
No 16
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=50.22 E-value=1.1e+02 Score=25.49 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 042324 106 AAELEKDLIVKELETLDVLEELGTTKKIVEELKLQLQKEAL 146 (554)
Q Consensus 106 ~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK~~Lqk~a~ 146 (554)
+.+|..++...-.++..+.=|+...+-.++++|.+.+.+..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~ 42 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML 42 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777778888999999999999999999987653
No 17
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.98 E-value=95 Score=27.26 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ 260 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l 260 (554)
...|+.+.+-+|+....|+.++++.-.+|...|.....-.+.-... ..+ .+..|+.+|.+++.++
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~---~q~--~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD---ARN--KLAELEEALQKAKQDM 98 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHhHHHHHHHH
Confidence 4788888899999999999999888888888887666544322111 111 5678999999888775
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.12 E-value=50 Score=29.92 Aligned_cols=32 Identities=0% Similarity=0.076 Sum_probs=15.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 204 RTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 204 Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
....|+.+|+.=..+++.+++..+.+++++++
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555544
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=46.56 E-value=3.6e+02 Score=31.79 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHhH----HHHHHHHHHHHH
Q 042324 100 KKVEEQAAELEKDLIVKELETLDVLEELGT----TKKIVEELKLQL 141 (554)
Q Consensus 100 ~kv~eq~~ele~~l~~~E~et~~vl~ELe~----TKr~iEeLK~~L 141 (554)
.+++.++.+|+.++...+.+...+.+++.. ...++.+|+.++
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l 969 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 567788888888887777776666655532 334444554444
No 20
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=45.96 E-value=1.6e+02 Score=26.22 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 042324 363 EEAVAEVKHSKQALEEALNRVENANRKQLAAGEALI 398 (554)
Q Consensus 363 EEa~kEvE~~K~ALeeAL~rAE~An~~KlAvEeeLR 398 (554)
......+......+..+-......+.....+...+.
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
T 1c1g_A 226 KVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 261 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.61 E-value=35 Score=30.21 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHhh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREKQ 260 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~l 260 (554)
...|+.+.+-+|+....|+.++++.-.+|...|.....-.+.-... -.+ .+..|+.+|.+++.++
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~---~q~--~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ---IQE--MIGSVEEQLAQLRCEM 100 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888888887776665544332221 111 5678899999888775
No 22
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.21 E-value=54 Score=24.93 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRM 223 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~EL 223 (554)
...++++++.++..++.+++.++..+..++.++
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554443
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.39 E-value=1.1e+02 Score=25.69 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042324 191 ILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTS 239 (554)
Q Consensus 191 i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e 239 (554)
+.||+++-|..-.....+...+++..+.|..+..+.+.++..-++|++.
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888877778888888999999999999988888888887553
No 24
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.87 E-value=76 Score=32.64 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHHh
Q 042324 190 LILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQVREK 259 (554)
Q Consensus 190 ~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ktr~~ 259 (554)
.+...|.+++.|+..+....++-.-.|-.|..-|++++..-.+ |+.|-.+ .|-.|+.+|+..+.+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQK---KVEELEG--EITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888777765321 3333333 445555555544433
No 25
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=37.36 E-value=32 Score=28.37 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=35.7
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHH
Q 042324 200 LNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELK 254 (554)
Q Consensus 200 ~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~ 254 (554)
..|..-.+|+.-|...|.|||.+|.+--.---+|.... .-+-..++.|+.+++
T Consensus 10 ~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~--~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 10 FKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN--LNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHHHhhcc
Confidence 34555668899999999999999999877776776532 222223455555544
No 26
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.48 E-value=1.7e+02 Score=24.56 Aligned_cols=54 Identities=24% Similarity=0.222 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHH
Q 042324 193 MELKQAKLNLGRTINDLG----VIQTSVESLNKRMKKEKRMLETTRERLTSKFASAGVPTLGEELKQ 255 (554)
Q Consensus 193 ~ELeeAK~nL~Ka~~El~----sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~VssLeaEL~k 255 (554)
.+|-+-|-.|+-+++||- -|-.=-+.|+.||........++++ .+..|+.||.+
T Consensus 19 ~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~---------ri~elEeElkr 76 (77)
T 2w83_C 19 TQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEE---------KNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhc
Confidence 455555666666655531 1222234455555555555555555 45666666654
No 27
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.71 E-value=1.7e+02 Score=22.03 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 194 ELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 194 ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrE 235 (554)
........+....+....++....+++..+.+....+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666666666666666666666
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.42 E-value=3e+02 Score=30.39 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=13.9
Q ss_pred HHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 205 TINDLG-VIQTSVESLNKRMKKEKRMLETTRE 235 (554)
Q Consensus 205 a~~El~-sLrssveSLr~ELekEK~eLe~lrE 235 (554)
+.+++. .|+.-+.-|+.++.....-|..||.
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQs 138 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQK 138 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 4444444444444444444444444
No 29
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.77 E-value=1.9e+02 Score=24.40 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=32.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHH
Q 042324 96 EFDIKKVEEQAAELEKDLIVKELETLDVLEELGTTKKIVEELK 138 (554)
Q Consensus 96 ~~el~kv~eq~~ele~~l~~~E~et~~vl~ELe~TKr~iEeLK 138 (554)
..||.+++..---++.+|...+...-+++.|++..+..+++|+
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777778888888888888888888777777754
No 30
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.83 E-value=6.9e+02 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=21.6
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHHHHH
Q 042324 115 VKELETLDVLEELGTTKKIVEELKLQLQK 143 (554)
Q Consensus 115 ~~E~et~~vl~ELe~TKr~iEeLK~~Lqk 143 (554)
..+++. +|++|+..+..+.+|+..|+.
T Consensus 40 l~~LE~--~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 40 LLEIEG--LLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 345555 888999999999999988874
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=20.79 E-value=3.2e+02 Score=23.00 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-----CCChHHHHHHH
Q 042324 189 DLILMELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLTSKFASAG-----VPTLGEELKQV 256 (554)
Q Consensus 189 ~~i~~ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~e~~As~~-----VssLeaEL~kt 256 (554)
+..-..++++.....+.-.++.+|+.=+..|..++++....|...+.+|.+..-... |.+|+-.++..
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!