Query 042324
Match_columns 554
No_of_seqs 143 out of 156
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 08:29:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042324.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042324hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nlwa_ a.38.1.1 (A:) Mad prot 20.2 93 0.0068 23.0 5.8 37 202-238 42-78 (79)
2 d1wmib1 a.137.13.1 (B:7-67) Hy 19.8 34 0.0025 24.9 2.8 17 122-138 2-18 (61)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 13.2 1.8E+02 0.013 21.7 5.9 35 202-236 47-81 (88)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 8.6 3E+02 0.022 20.3 5.7 40 194-233 46-85 (88)
5 d2adca2 d.58.7.1 (A:444-531) P 6.6 83 0.0061 23.0 1.3 16 523-538 42-57 (88)
6 d2i5ua1 a.275.1.1 (A:2-75) Unc 6.3 2.4E+02 0.018 21.0 4.0 31 372-402 38-69 (74)
7 d2jdia1 a.69.1.1 (A:380-510) F 5.2 4.5E+02 0.033 20.9 5.5 66 62-145 53-122 (131)
8 d1zfja4 d.37.1.1 (A:95-220) Ty 4.9 1.6E+02 0.012 22.4 2.3 46 453-501 7-56 (126)
9 d2nu7a1 c.2.1.8 (A:2-120) Succ 4.9 1.1E+02 0.0078 25.4 1.1 20 59-78 45-64 (119)
10 d1gg2g_ a.137.3.1 (G:) Transdu 4.8 2E+02 0.015 20.4 2.5 16 127-142 2-17 (54)
No 1
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.22 E-value=93 Score=22.95 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=26.1
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042324 202 LGRTINDLGVIQTSVESLNKRMKKEKRMLETTRERLT 238 (554)
Q Consensus 202 L~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEKl~ 238 (554)
|.+|++-+..|+.-+..|..+++..+.....|+.++.
T Consensus 42 L~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666777777777777777777777777653
No 2
>d1wmib1 a.137.13.1 (B:7-67) Hypothetical protein PHS014 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=19.80 E-value=34 Score=24.91 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHH
Q 042324 122 DVLEELGTTKKIVEELK 138 (554)
Q Consensus 122 ~vl~ELe~TKr~iEeLK 138 (554)
|||+||++.|-.|+.|.
T Consensus 2 dvlkelerlkveiqrle 18 (61)
T d1wmib1 2 DVLKELERLKVEIQRLE 18 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 68899888777776554
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.21 E-value=1.8e+02 Score=21.66 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=18.3
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 202 LGRTINDLGVIQTSVESLNKRMKKEKRMLETTRER 236 (554)
Q Consensus 202 L~Ka~~El~sLrssveSLr~ELekEK~eLe~lrEK 236 (554)
|.+|.+-+..|+.-+..|..+++..+..++.|+.+
T Consensus 47 L~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~ 81 (88)
T d1nkpa_ 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555553
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.58 E-value=3e+02 Score=20.30 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042324 194 ELKQAKLNLGRTINDLGVIQTSVESLNKRMKKEKRMLETT 233 (554)
Q Consensus 194 ELeeAK~nL~Ka~~El~sLrssveSLr~ELekEK~eLe~l 233 (554)
=|..|-..|.....++..+..-.+.|+.+.+.....+..|
T Consensus 46 iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777766777777777777777777666666555
No 5
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.57 E-value=83 Score=22.96 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=11.3
Q ss_pred cccccccccceeeeec
Q 042324 523 QFFAQRRKFGFIHISL 538 (554)
Q Consensus 523 qf~~kRkkfgF~~~s~ 538 (554)
.+.++.|.|||+.|.-
T Consensus 42 ~~~~~~~~~afV~f~~ 57 (88)
T d2adca2 42 KFFQKDRKMALIQMGS 57 (88)
T ss_dssp EECSSSTTCEEEEESS
T ss_pred EeeecccceeEEEECC
Confidence 3455667899999863
No 6
>d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.31 E-value=2.4e+02 Score=21.03 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhhHH-HHHHHHhhccC
Q 042324 372 SKQALEEALNRVENANRKQL-AAGEALIRWTP 402 (554)
Q Consensus 372 ~K~ALeeAL~rAE~An~~Kl-AvEeeLRrWR~ 402 (554)
.-+-+.+||+.|-.+|.-.. =|+.-||.|+.
T Consensus 38 ~~elv~~Al~~Av~~n~~n~~Yi~~IL~~W~~ 69 (74)
T d2i5ua1 38 AEQLIVKAIEIAIDANARNYNYINAILKDWEQ 69 (74)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 44566667776666664443 48999999974
No 7
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.24 E-value=4.5e+02 Score=20.85 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=41.0
Q ss_pred cCCCCccHHHHHHhhcCc---ccCCcccchhhhcCCChhhhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHhHHHHHHHHH
Q 042324 62 TSPPFGSVKEAVTRFGGS---ESWPPLYKLAEYHGVGEFDIKKVEEQAAELEKDLIVKEL-ETLDVLEELGTTKKIVEEL 137 (554)
Q Consensus 62 t~~pf~sVkeAv~~FGg~---~~w~~~~~~~e~~~~~~~el~kv~eq~~ele~~l~~~E~-et~~vl~ELe~TKr~iEeL 137 (554)
=..|+.-..++|..|.|. .++.|. . ++..++..+...-. ...++++++..++.+=+++
T Consensus 53 q~~Pl~v~eQv~iL~A~~~G~lD~i~v--------------~----~I~~fe~~ll~~l~~~~~~~l~~I~~~~~l~de~ 114 (131)
T d2jdia1 53 QYSPMAIEEQVAVIYAGVRGYLDKLEP--------------S----KITKFENAFLSHVISQHQALLGKIRTDGKISEES 114 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTTTSCG--------------G----GHHHHHHHHHHHHHHTCHHHHHHHHHHTSCCHHH
T ss_pred cccchhHHHHHHHHHHHhcCCccccCH--------------H----HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCHHH
Confidence 456887778888888754 333333 2 23344444433332 3356889998888877778
Q ss_pred HHHHHHHH
Q 042324 138 KLQLQKEA 145 (554)
Q Consensus 138 K~~Lqk~a 145 (554)
+..|.+..
T Consensus 115 ~~~L~~ai 122 (131)
T d2jdia1 115 DAKLKEIV 122 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 8
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.95 E-value=1.6e+02 Score=22.43 Aligned_cols=46 Identities=11% Similarity=-0.041 Sum_probs=26.3
Q ss_pred CC-CCCcccHHHHhhhcccChhhhhhhhhccCC---ccccccccHHHHHHHhh
Q 042324 453 PV-LRPTVSMRDILSRKQVQPEECVVRRQAEKH---PAERQKVALSQMLQELR 501 (554)
Q Consensus 453 p~-lk~t~SigqiLs~Kl~~pee~~~~~~~~~~---~~e~~kvsLgQmL~~~~ 501 (554)
|+ +.|+.|+++++.. |.-.+|.. -.+-+. .--..-|+.+.|+....
T Consensus 7 pvtv~~~~tv~~a~~~--m~~~~~~~-~pVvD~~~~~~lvGivt~~Di~~~~~ 56 (126)
T d1zfja4 7 PFFLTPEHKVSEAEEL--MQRYRISG-VPIVETLANRKLVGIITNRDMRFISD 56 (126)
T ss_dssp CCCBCSSSBHHHHHHH--HHHTTCSE-EEEESCTTTCBEEEEEEHHHHHHCSC
T ss_pred ceEECCCCCHHHHHHH--HHHhCCCc-EEEEeeccCCeEEEEeEHHHHHHhhc
Confidence 44 8999999998863 32223321 122221 11235688899887654
No 9
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}
Probab=4.93 E-value=1.1e+02 Score=25.38 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=16.0
Q ss_pred eeccCCCCccHHHHHHhhcC
Q 042324 59 EIDTSPPFGSVKEAVTRFGG 78 (554)
Q Consensus 59 eiDt~~pf~sVkeAv~~FGg 78 (554)
+++.=+=|.||+|||..+|-
T Consensus 45 ~~~giPVf~sV~eAv~~~~~ 64 (119)
T d2nu7a1 45 THLGLPVFNTVREAVAATGA 64 (119)
T ss_dssp EETTEEEESSHHHHHHHHCC
T ss_pred ccCCCchhhHHHHHHHHhCC
Confidence 44556679999999999984
No 10
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.83 E-value=2e+02 Score=20.39 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHHHHHH
Q 042324 127 LGTTKKIVEELKLQLQ 142 (554)
Q Consensus 127 Le~TKr~iEeLK~~Lq 142 (554)
|+..|++||.||.++.
T Consensus 2 i~q~rk~VeqLr~e~~ 17 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEAN 17 (54)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5678999999998874
Done!