BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042325
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 96.7 bits (239), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 15/137 (10%)
Query: 8 IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
+ TG GE VTC+ Q + +LF AVLGGLGQF ITRARI + PA R +W+R++Y+DF++F
Sbjct: 185 VITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAF 244
Query: 66 STDQETLISTT----GPSHKVMPDYLEGQLLMSQS------PLDFYPQSQHQKITSLINQ 115
S DQE L + G S M Y+EG + ++QS F+ + +I +L +
Sbjct: 245 SADQERLTAPRPGGGGASFGPM-SYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGE 303
Query: 116 YG--IVYLIEVATYYDN 130
VY IE YDN
Sbjct: 304 RNATTVYSIEATLNYDN 320
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 96.7 bits (239), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 15/137 (10%)
Query: 8 IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
+ TG GE VTC+ Q + +LF AVLGGLGQF ITRARI + PA R +W+R++Y+DF++F
Sbjct: 185 VITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAF 244
Query: 66 STDQETLISTT----GPSHKVMPDYLEGQLLMSQS------PLDFYPQSQHQKITSLINQ 115
S DQE L + G S M Y+EG + ++QS F+ + +I +L +
Sbjct: 245 SADQERLTAPRPGGGGASFGPM-SYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGE 303
Query: 116 YG--IVYLIEVATYYDN 130
VY IE YDN
Sbjct: 304 RNATTVYSIEATLNYDN 320
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 96.7 bits (239), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 15/137 (10%)
Query: 8 IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
+ TG GE VTC+ Q + +LF AVLGGLGQF ITRARI + PA R +W+R++Y+DF++F
Sbjct: 185 VITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAF 244
Query: 66 STDQETLISTT----GPSHKVMPDYLEGQLLMSQS------PLDFYPQSQHQKITSLINQ 115
S DQE L + G S M Y+EG + ++QS F+ + +I +L +
Sbjct: 245 SADQERLTAPRPGGGGASFGPM-SYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGE 303
Query: 116 YG--IVYLIEVATYYDN 130
VY IE YDN
Sbjct: 304 RNATTVYSIEATLNYDN 320
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 96.7 bits (239), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 15/137 (10%)
Query: 8 IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
+ TG GE VTC+ Q + +LF AVLGGLGQF ITRARI + PA R +W+R++Y+DF++F
Sbjct: 185 VITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAF 244
Query: 66 STDQETLISTT----GPSHKVMPDYLEGQLLMSQS------PLDFYPQSQHQKITSLINQ 115
S DQE L + G S M Y+EG + ++QS F+ + +I +L +
Sbjct: 245 SADQERLTAPRPGGGGASFGPM-SYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGE 303
Query: 116 YG--IVYLIEVATYYDN 130
VY IE YDN
Sbjct: 304 RNATTVYSIEATLNYDN 320
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 96.7 bits (239), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 15/137 (10%)
Query: 8 IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
+ TG GE VTC+ Q + +LF AVLGGLGQF ITRARI + PA R +W+R++Y+DF++F
Sbjct: 185 VITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAF 244
Query: 66 STDQETLISTT----GPSHKVMPDYLEGQLLMSQS------PLDFYPQSQHQKITSLINQ 115
S DQE L + G S M Y+EG + ++QS F+ + +I +L +
Sbjct: 245 SADQERLTAPRPGGGGASFGPM-SYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGE 303
Query: 116 YG--IVYLIEVATYYDN 130
VY IE YDN
Sbjct: 304 RNATTVYSIEATLNYDN 320
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 95.9 bits (237), Expect = 7e-21, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 15/137 (10%)
Query: 8 IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
+ TG GE VTC+ Q + +LF AVLGGLGQF ITRARI + PA R +W+R +Y+DF++F
Sbjct: 203 VITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAF 262
Query: 66 STDQETLISTT----GPSHKVMPDYLEGQLLMSQS------PLDFYPQSQHQKITSLINQ 115
S DQE L + G S M Y+EG + ++QS F+ + +I +L +
Sbjct: 263 SADQERLTAPRPGGGGASFGPM-SYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGE 321
Query: 116 YG--IVYLIEVATYYDN 130
VY IE YDN
Sbjct: 322 RNATTVYSIEATLNYDN 338
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 89.4 bits (220), Expect = 7e-19, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 85/136 (62%), Gaps = 12/136 (8%)
Query: 8 IFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSF 65
+ TG G+ VTC+ +++ELF++VLGGLGQF ITRAR++L PA + V+W+R++Y++F F
Sbjct: 196 VVTGNGDVVTCSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDXVRWIRVVYTEFDEF 255
Query: 66 STDQETLISTTGPSHKVMPDYLEGQLLMSQS-PLDFYP----QSQHQKITSLINQY--GI 118
+ D E L+S S DY+EG + ++ + P++ +P H+ + + Q +
Sbjct: 256 TQDAEWLVSQKNESSF---DYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSV 312
Query: 119 VYLIEVATYYDNKNED 134
+Y +E+ +Y + + +
Sbjct: 313 LYCLELGLHYRDSDSN 328
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 70 ETLISTTGPSHKVMPDYLEGQLLMSQSPLDFYPQSQHQKITSLINQYGIVYLIEVATY 127
E + G K+ P+ + MSQS D +P + H + SL+NQ LIE Y
Sbjct: 117 ELMGEEKGNYSKISPN---SHVNMSQSTNDAFPTATHIAVLSLLNQ-----LIETTKY 166
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 93 MSQSPLDFYPQSQHQKITSLINQYGIVYLIEVATY 127
MSQS D +P + H + SL+NQ LIE Y
Sbjct: 137 MSQSTNDAFPTATHIAVLSLLNQ-----LIETTKY 166
>pdb|1PZ1|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11b(Holo)
pdb|1PZ1|B Chain B, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11b(Holo)
Length = 333
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 63 SSFSTDQETLISTTGPSHKVMPDYLEGQLLMSQSPLDFYPQSQHQKITSLI 113
S+FS +Q P H + P Y L + P ++ KIT+L+
Sbjct: 155 SNFSIEQXDTFRAVAPLHTIQPPY---NLFEREXEESVLPYAKDNKITTLL 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,456,114
Number of Sequences: 62578
Number of extensions: 164046
Number of successful extensions: 369
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 12
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)