Query 042325
Match_columns 145
No_of_seqs 230 out of 1223
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.4E-34 5.2E-39 255.8 15.9 139 3-144 194-347 (525)
2 KOG1231 Proteins containing th 100.0 5.2E-29 1.1E-33 216.7 5.5 120 4-144 192-326 (505)
3 PF09265 Cytokin-bind: Cytokin 99.9 1.1E-23 2.4E-28 175.3 9.3 94 49-145 1-108 (281)
4 TIGR01679 bact_FAD_ox FAD-link 99.5 1.1E-13 2.4E-18 120.2 11.2 82 3-94 128-211 (419)
5 TIGR01676 GLDHase galactonolac 99.4 1.1E-12 2.4E-17 117.7 11.3 83 3-95 181-265 (541)
6 TIGR01678 FAD_lactone_ox sugar 99.3 6.4E-12 1.4E-16 110.1 10.8 82 3-94 134-217 (438)
7 KOG1262 FAD-binding protein DI 99.3 1.8E-12 3.9E-17 112.8 7.0 115 3-120 180-302 (543)
8 TIGR01677 pln_FAD_oxido plant- 99.2 4.6E-11 9.9E-16 107.7 9.1 72 3-76 158-237 (557)
9 PLN02465 L-galactono-1,4-lacto 99.2 1.9E-10 4E-15 104.2 11.4 90 3-94 216-307 (573)
10 PRK11282 glcE glycolate oxidas 98.9 4.3E-09 9.3E-14 90.4 9.2 88 3-93 117-211 (352)
11 PRK11230 glycolate oxidase sub 98.9 1.2E-08 2.5E-13 90.9 9.6 73 3-75 179-257 (499)
12 PLN02805 D-lactate dehydrogena 98.8 4.4E-08 9.6E-13 88.5 9.7 71 4-74 256-333 (555)
13 TIGR00387 glcD glycolate oxida 98.6 1.9E-07 4.2E-12 80.9 9.0 72 4-75 122-200 (413)
14 KOG4730 D-arabinono-1, 4-lacto 98.4 9.2E-07 2E-11 78.4 7.8 70 6-77 173-245 (518)
15 COG0277 GlcD FAD/FMN-containin 98.3 2.5E-06 5.4E-11 73.2 7.4 63 4-66 155-224 (459)
16 PRK13905 murB UDP-N-acetylenol 97.4 0.00016 3.4E-09 60.5 3.7 44 3-49 146-193 (298)
17 KOG1233 Alkyl-dihydroxyacetone 93.7 0.077 1.7E-06 47.4 3.8 72 4-75 289-366 (613)
18 PRK13903 murB UDP-N-acetylenol 93.1 0.15 3.2E-06 44.4 4.6 44 3-49 148-197 (363)
19 PRK14652 UDP-N-acetylenolpyruv 90.6 0.34 7.3E-06 40.9 3.9 42 4-49 152-196 (302)
20 PRK12436 UDP-N-acetylenolpyruv 90.2 0.47 1E-05 40.1 4.5 43 4-49 152-198 (305)
21 KOG1232 Proteins containing th 86.5 1.9 4E-05 38.6 5.8 70 3-75 213-289 (511)
22 PRK13906 murB UDP-N-acetylenol 77.3 3.9 8.5E-05 34.6 4.3 43 4-49 152-198 (307)
23 PRK11183 D-lactate dehydrogena 76.4 6.8 0.00015 36.2 5.8 53 23-75 237-292 (564)
24 PRK14649 UDP-N-acetylenolpyruv 72.6 4.8 0.0001 33.8 3.7 43 4-49 139-193 (295)
25 TIGR00179 murB UDP-N-acetyleno 62.1 15 0.00032 30.7 4.5 44 4-50 129-177 (284)
26 PRK14653 UDP-N-acetylenolpyruv 51.4 25 0.00054 29.7 4.2 42 4-49 148-194 (297)
27 COG0812 MurB UDP-N-acetylmuram 50.9 26 0.00057 29.8 4.3 42 4-48 138-183 (291)
28 PRK14651 UDP-N-acetylenolpyruv 46.4 36 0.00078 28.6 4.4 42 4-49 127-171 (273)
29 PRK14650 UDP-N-acetylenolpyruv 36.1 67 0.0015 27.3 4.5 44 4-50 149-196 (302)
30 PRK00046 murB UDP-N-acetylenol 34.7 66 0.0014 27.7 4.3 42 4-48 139-188 (334)
31 KOG2107 Uncharacterized conser 29.5 79 0.0017 25.1 3.6 59 63-134 47-112 (179)
32 PF02762 Cbl_N3: CBL proto-onc 23.7 88 0.0019 21.9 2.6 28 5-33 41-68 (86)
33 PF12913 SH3_6: SH3 domain of 23.1 91 0.002 20.0 2.4 31 83-122 14-44 (54)
34 PF04030 ALO: D-arabinono-1,4- 21.8 30 0.00065 27.7 0.0 44 41-94 1-44 (259)
35 KOG3408 U1-like Zn-finger-cont 21.8 24 0.00051 26.7 -0.6 18 115-132 54-71 (129)
36 PF12791 RsgI_N: Anti-sigma fa 20.5 95 0.0021 19.1 2.1 19 6-24 8-26 (56)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.4e-34 Score=255.79 Aligned_cols=139 Identities=47% Similarity=0.842 Sum_probs=126.3
Q ss_pred eeeeEEEecCCcEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccCCCC
Q 042325 3 WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSH 80 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~ 80 (145)
-+++|||||+|++++||+++|+|||||++||+|+| ||++||+++|+|+.++|+++.|.++++++++++++++.....
T Consensus 194 Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~~~~~- 272 (525)
T PLN02441 194 VLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLISRPPEN- 272 (525)
T ss_pred EEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHhcCCCC-
Confidence 36899999999999999999999999999999999 999999999999999999999999999999999999833222
Q ss_pred CCCCCeeEEEEeec-CCCCC-----CCCCcccccceecccCccEEEEEEEEeeeCCCChh-------hhccCCCCCC
Q 042325 81 KVMPDYLEGQLLMS-QSPLD-----FYPQSQHQKITSLINQYGIVYLIEVATYYDNKNED-------KVSHQSSYIP 144 (145)
Q Consensus 81 ~~~~dyveG~v~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~Y~le~~~~y~~~~~~-------~~l~~L~~~~ 144 (145)
.+||+||+++++ ++.++ ||+|+|+.++++++++++|+||||++||||+++++ .+|++|+|+|
T Consensus 273 --~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~~ 347 (525)
T PLN02441 273 --SFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIP 347 (525)
T ss_pred --CcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCCC
Confidence 699999999999 46555 89999999999999999999999999999987652 4599999987
No 2
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.95 E-value=5.2e-29 Score=216.73 Aligned_cols=120 Identities=41% Similarity=0.650 Sum_probs=109.8
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccCCCCC
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSHK 81 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~~ 81 (145)
..++||||+||+++||+..|++||++++||+||| ||||||+|+|+|.+ ||+.+++..+
T Consensus 192 ~~LdVVtgkGeiv~cs~r~n~~lf~~vlGglGqfGIITrArI~le~aP~~----------------dQe~lis~~~---- 251 (505)
T KOG1231|consen 192 IELDVVTGKGEIVTCSKRANSNLFFLVLGGLGQFGIITRARIKLEPAPKR----------------DQERLISVCG---- 251 (505)
T ss_pred EEEEEEcCCCcEEecccccCceeeeeeeccCcceeeEEEEEEEeccCCcc----------------chHHhhhhhc----
Confidence 5799999999999999999999999999999999 99999999999975 9999999864
Q ss_pred CCCCeeEEEEeecC-CCCC-----CCCCcccccceecccCccEEEEEEEEeeeCCCChhhh-------ccCCCCCC
Q 042325 82 VMPDYLEGQLLMSQ-SPLD-----FYPQSQHQKITSLINQYGIVYLIEVATYYDNKNEDKV-------SHQSSYIP 144 (145)
Q Consensus 82 ~~~dyveG~v~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~Y~le~~~~y~~~~~~~~-------l~~L~~~~ 144 (145)
.||||||++..+. ++.+ +|++.|..+++++.++++++||||+|||||..+.+.+ ++.|+|.|
T Consensus 252 -~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~~~~~~~~yclev~ky~d~~e~pti~~e~~~l~~~l~~~~ 326 (505)
T KOG1231|consen 252 -SFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAINSDHSTNYCLEVAKYYDLTEAPTLFQEIGGLSEKLNYAP 326 (505)
T ss_pred -CCcchhhhhhhhhccccccceeeccccCcHHHHHHHHhcCCeeeeeehhhccCcccCchHHHHHhccchhhhccc
Confidence 6999999999994 8776 7999999999999999999999999999999877755 66677765
No 3
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=99.90 E-value=1.1e-23 Score=175.27 Aligned_cols=94 Identities=38% Similarity=0.746 Sum_probs=76.4
Q ss_pred CCeEEEEEEEecChhhHHHHHHHHHhccCCCCCCCCCeeEEEEeecC-CCCC-----CCCCcccccceeccc-CccEEEE
Q 042325 49 KERVKWLRILYSDFSSFSTDQETLISTTGPSHKVMPDYLEGQLLMSQ-SPLD-----FYPQSQHQKITSLIN-QYGIVYL 121 (145)
Q Consensus 49 ~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~~~~~dyveG~v~~~~-~~~~-----~~~~~~~~~~~~~~~-~~~~~Y~ 121 (145)
|+++||+|+.|+|+++|++|||+||+.+... .+|||||+|++|. |++| ||+|+++.++++|++ +++|+||
T Consensus 1 p~~vrw~r~~Y~df~~ft~DqE~Lis~~~~~---~~DYvEGfv~~n~~~~~~~w~s~~f~~~~~~~~~~l~~~~g~~lY~ 77 (281)
T PF09265_consen 1 PKRVRWIRLLYSDFATFTRDQERLISKPESG---AFDYVEGFVILNRQGLINNWRSSFFSPSDPARISSLVSENGGWLYC 77 (281)
T ss_dssp -SEEEEEEEEES-HHHHHHHHHHHHTCBTTT---S-SEEEEEEEECCGHCCCCHCCSSSSCCCHHHHHHCHCCT-SEEEE
T ss_pred CCceEEEEeeeccHHHHHhhHHHHhcCCCCC---CcceeceeeeecCCCCcCCccCCCCCcccccccccccccCCCEEEE
Confidence 5689999999999999999999999987533 4999999999996 8887 799999999999988 7899999
Q ss_pred EEEEeeeCCCChh-------hhccCCCCCCC
Q 042325 122 IEVATYYDNKNED-------KVSHQSSYIPQ 145 (145)
Q Consensus 122 le~~~~y~~~~~~-------~~l~~L~~~~~ 145 (145)
||+|||||+++++ .+|++|+|+|.
T Consensus 78 LE~a~~y~~~~~~~vd~~~~~LL~~L~~~~~ 108 (281)
T PF09265_consen 78 LEVAKYYDPPTAPDVDQEVEALLAGLSFIPG 108 (281)
T ss_dssp EEEEEEE-TTTHHHHHHHHHHHHTT--S-TT
T ss_pred EEEEEecCCccchhhHHHHHHHHhhcCCCcC
Confidence 9999999987653 34999999873
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.51 E-value=1.1e-13 Score=120.21 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=70.0
Q ss_pred eeeeEEEecCCcEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccCCCC
Q 042325 3 WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSH 80 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~ 80 (145)
-++++||++||++++||+++|+|||||++||+|+| ||++|||++|++.... +....++++++++.+.+++.+
T Consensus 128 V~~l~vV~a~G~v~~~~~~~~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~---- 201 (419)
T TIGR01679 128 IVSLRLVTAGGKVLDLSEGDDQDMYLAARVSLGALGVISQVTLQTVALFRLRR--RDWRRPLAQTLERLDEFVDGH---- 201 (419)
T ss_pred EEEEEEEcCCCCEEEEcCCCCHHHHHHHHhCCCceEEEEEEEEEeecceEeEE--EEEecCHHHHHHHHHHHHhcC----
Confidence 47899999999999999999999999999999999 9999999999997543 345678999999999988863
Q ss_pred CCCCCeeEEEEeec
Q 042325 81 KVMPDYLEGQLLMS 94 (145)
Q Consensus 81 ~~~~dyveG~v~~~ 94 (145)
+++|.++++.
T Consensus 202 ----~~~~~~~~p~ 211 (419)
T TIGR01679 202 ----RHFEFYVFPF 211 (419)
T ss_pred ----CeEEEEEecC
Confidence 5666666653
No 5
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.43 E-value=1.1e-12 Score=117.75 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=70.4
Q ss_pred eeeeEEEecCCcEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccCCCC
Q 042325 3 WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSH 80 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~ 80 (145)
-++++||||+|++++||+++|||||||++||+|.| ||++||+++|++..... ..-.++++++++.+.+++++
T Consensus 181 V~~l~lVta~G~vv~~s~~~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~--~~~~~~~e~l~~~~~~~~~~---- 254 (541)
T TIGR01676 181 VIAMKLVTPAKGTIEISKDKDPELFFLARCGLGGLGVVAEVTLQCVERQELVEH--TFISNMKDIKKNHKKFLADN---- 254 (541)
T ss_pred EEEEEEEECCCCEEEECCCCCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEE--EEecCHHHHHHHHHHHHhcC----
Confidence 47899999999999999999999999999999999 99999999999986432 22379999999999988765
Q ss_pred CCCCCeeEEEEeecC
Q 042325 81 KVMPDYLEGQLLMSQ 95 (145)
Q Consensus 81 ~~~~dyveG~v~~~~ 95 (145)
++++-+.++..
T Consensus 255 ----~h~~f~wfP~t 265 (541)
T TIGR01676 255 ----KHVKYLHIPYT 265 (541)
T ss_pred ----CcEEEEEEcCC
Confidence 55666666644
No 6
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.35 E-value=6.4e-12 Score=110.11 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=69.5
Q ss_pred eeeeEEEecCCcEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccCCCC
Q 042325 3 WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSH 80 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~ 80 (145)
-++++||++||++++||+++|+|||||++||+|+| ||++||+++|++..... ....+++++++..+.++++
T Consensus 134 V~~l~vV~~~G~i~~~s~~~~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~~~----- 206 (438)
T TIGR01678 134 VVALTIMTADGEVLECSEERNADVFQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHWKS----- 206 (438)
T ss_pred EEEEEEEcCCCcEEEeCCCCChhHHHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHhhc-----
Confidence 37899999999999999999999999999999999 99999999999876533 4567899999988877664
Q ss_pred CCCCCeeEEEEeec
Q 042325 81 KVMPDYLEGQLLMS 94 (145)
Q Consensus 81 ~~~~dyveG~v~~~ 94 (145)
.+|+|-+.++.
T Consensus 207 ---~~~~~~~w~p~ 217 (438)
T TIGR01678 207 ---SEFFRVLWFPY 217 (438)
T ss_pred ---CCeEEEEEEcC
Confidence 36777766653
No 7
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.34 E-value=1.8e-12 Score=112.79 Aligned_cols=115 Identities=19% Similarity=0.321 Sum_probs=86.2
Q ss_pred eeeeEEEecCCcEEEecCC-CChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccC--
Q 042325 3 WRAPFIFTGKGEFVTCTSQ-KDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTG-- 77 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS~~-~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~-- 77 (145)
-+++|||++||++++|.++ +|+|||+|+.++-|++ ++.|||++.|+.+. +++.|.+.....+-+..+++..+
T Consensus 180 ~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Y---vkltyip~~~l~e~c~k~~e~~~ds 256 (543)
T KOG1262|consen 180 CTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKY---VKLTYIPVHGLDEYCKKITELSGDS 256 (543)
T ss_pred hheeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccce---EEEEEEecccHHHHHHHHHhhcccc
Confidence 4789999999999999997 9999999999999997 99999999999986 45778887777777777776322
Q ss_pred CCCCCCCCeeEEEEeecC-CCCC--CCCCcccccceecccCccEEE
Q 042325 78 PSHKVMPDYLEGQLLMSQ-SPLD--FYPQSQHQKITSLINQYGIVY 120 (145)
Q Consensus 78 ~~~~~~~dyveG~v~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~Y 120 (145)
++++...|||||.++..+ |.+- .|+...-+........-+|.|
T Consensus 257 dkntk~~dfvE~liyn~~egviMvG~fad~~dak~~~kvN~vgwwy 302 (543)
T KOG1262|consen 257 DKNTKNADFVEGLIYNKNEGVIMVGNFADKVDAKSNAKVNDVGWWY 302 (543)
T ss_pred cccccccchhheeeecCCccEEEEEeccCccccccccccccchhhh
Confidence 222235799999999987 7554 566543333333344434444
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.22 E-value=4.6e-11 Score=107.73 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=61.7
Q ss_pred eeeeEEEecCC------cEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHh
Q 042325 3 WRAPFIFTGKG------EFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLIS 74 (145)
Q Consensus 3 ~~~~evVtgdG------evv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~ 74 (145)
-++++|||++| ++++||+++|+|||||++||+|+| ||++|||++|.+... ....+.+.+.+.+..+.+.+
T Consensus 158 V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~--~~~~~~~~~~l~~~~~~~~~ 235 (557)
T TIGR01677 158 VVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKRS--VTYTMRDDSDFEDQFVTFGK 235 (557)
T ss_pred EEEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccce--EEEEcCCHHHHHHHHHHhhc
Confidence 47899999998 899999999999999999999999 999999999998743 33566778888877877776
Q ss_pred cc
Q 042325 75 TT 76 (145)
Q Consensus 75 ~~ 76 (145)
.+
T Consensus 236 ~~ 237 (557)
T TIGR01677 236 KH 237 (557)
T ss_pred CC
Confidence 54
No 9
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.18 E-value=1.9e-10 Score=104.16 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=71.3
Q ss_pred eeeeEEEecCCcEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccCCCC
Q 042325 3 WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSH 80 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~ 80 (145)
-++++||+++|++++||+++|+|||||++||+|.+ ||++||+++|+++... +....++++++++++.+++.+.+-.
T Consensus 216 V~~l~lVta~G~vv~~s~~~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~--~~~~~~~~~~~~~~~~~~~~~~h~~ 293 (573)
T PLN02465 216 VVSMKLVTPAKGTIELSKEDDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVE--HTFVSNRKEIKKNHKKWLSENKHIR 293 (573)
T ss_pred EEEEEEEECCCCEEEECCCCCHHHHhHhhccCCCCcEEEEEEEEEEecCceEE--EEEEecHHHHHHHHHHHHHhCcccc
Confidence 46899999999999999999999999999999999 9999999999998643 2345689999999999998775321
Q ss_pred CCCCCeeEEEEeec
Q 042325 81 KVMPDYLEGQLLMS 94 (145)
Q Consensus 81 ~~~~dyveG~v~~~ 94 (145)
+--|.|.+..++..
T Consensus 294 f~wfP~td~~~v~~ 307 (573)
T PLN02465 294 YMWIPYTDTVVVVT 307 (573)
T ss_pred eeecCCcceEEEEe
Confidence 11144555554443
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=98.94 E-value=4.3e-09 Score=90.35 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=62.5
Q ss_pred eeeeEEEecCCcEEEecCC-----CChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhc
Q 042325 3 WRAPFIFTGKGEFVTCTSQ-----KDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLIST 75 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS~~-----~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~ 75 (145)
-+++++|++||++++|+.. .++||||+++|++|+| ||++|+|++|.|.....+.+.+ +..+..+....+...
T Consensus 117 Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVitevtlkl~P~p~~~~t~~~~~-~~~~a~~~~~~~~~~ 195 (352)
T PRK11282 117 VLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVLLEVSLKVLPRPRAELTLRLEM-DAAEALRKLNEWGGQ 195 (352)
T ss_pred EeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhheEEEEEEEecCceEEEEEEec-CHHHHHHHHHHHhcC
Confidence 3689999999999999764 3579999999999999 9999999999998655544443 345556666665543
Q ss_pred cCCCCCCCCCeeEEEEee
Q 042325 76 TGPSHKVMPDYLEGQLLM 93 (145)
Q Consensus 76 ~~~~~~~~~dyveG~v~~ 93 (145)
.-.-. .++++++.++.
T Consensus 196 ~~~~~--~~~~~~~~l~~ 211 (352)
T PRK11282 196 PLPIS--ASCWDGGTLYL 211 (352)
T ss_pred CCCCc--hhhhcCCeeEE
Confidence 21100 24555554444
No 11
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=98.87 E-value=1.2e-08 Score=90.89 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=63.2
Q ss_pred eeeeEEEecCCcEEEecCC----CChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhc
Q 042325 3 WRAPFIFTGKGEFVTCTSQ----KDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLIST 75 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS~~----~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~ 75 (145)
-++++||++||++++|+.. .++||||+.+|+.|+| ||++||++.|.|+...+..+.|.++++..+....+...
T Consensus 179 v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~ 257 (499)
T PRK11230 179 LLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAA 257 (499)
T ss_pred eeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhc
Confidence 3689999999999999864 4789999999999999 99999999999987777777888998888877776543
No 12
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=98.76 E-value=4.4e-08 Score=88.46 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=59.5
Q ss_pred eeeEEEecCCcEEEecC-C----CChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHh
Q 042325 4 RAPFIFTGKGEFVTCTS-Q----KDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLIS 74 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~-~----~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~ 74 (145)
++++||++||++++++. . ..+||||+++|+.|+| ||++|+++.|.|.......+.|.++++..+....++.
T Consensus 256 ~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~ 333 (555)
T PLN02805 256 ISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATML 333 (555)
T ss_pred EEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHh
Confidence 68999999999998743 2 3479999999999999 9999999999998766666778888887777766654
No 13
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=98.61 E-value=1.9e-07 Score=80.85 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=61.7
Q ss_pred eeeEEEecCCcEEEecCCC-----ChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhc
Q 042325 4 RAPFIFTGKGEFVTCTSQK-----DTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLIST 75 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~-----n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~ 75 (145)
++++||++||++++++... .+||++...|+.|+| ||+++|+|+|.|+...+....|.++++..+....++..
T Consensus 122 ~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~ 200 (413)
T TIGR00387 122 LGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAA 200 (413)
T ss_pred eeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhc
Confidence 6899999999999997543 459999999999998 99999999999997767777888999888887776654
No 14
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=98.40 E-value=9.2e-07 Score=78.39 Aligned_cols=70 Identities=27% Similarity=0.276 Sum_probs=58.4
Q ss_pred eEEEecCCcEEEecCCCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHH-HHHhccC
Q 042325 6 PFIFTGKGEFVTCTSQKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQE-TLISTTG 77 (145)
Q Consensus 6 ~evVtgdGevv~cS~~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~-~li~~~~ 77 (145)
..++.+||.+++||++.+||+|.|++.|||-+ |.++||+++|++++... ....+..+.++|+. .+.+.++
T Consensus 173 ~~~~~~~G~v~~Ls~e~dpe~F~AAkvSLG~LGVIs~VTl~~vp~Fk~s~t--~~v~n~~dl~~d~~~~~~~~~E 245 (518)
T KOG4730|consen 173 SPITPADGFVVVLSEEKDPELFNAAKVSLGVLGVISQVTLSVVPAFKRSLT--YVVTNDSDLFKDWKVTLGESHE 245 (518)
T ss_pred eeeccCCceEEEecccCCHHHHhhhhhcccceeEEEEEEEEEEecceeeeE--EEEechHHHHHHHHHHhccccc
Confidence 34567899999999999999999999999999 99999999999987533 34467778778877 6666664
No 15
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=98.27 E-value=2.5e-06 Score=73.20 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=51.0
Q ss_pred eeeEEEecCCcEEEecCC---CC--hhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHH
Q 042325 4 RAPFIFTGKGEFVTCTSQ---KD--TELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFS 66 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~---~n--~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~ 66 (145)
+++++|++||++++|++. ++ .||+++..||.|+| ||++|+++.|.|+........+.+.+...
T Consensus 155 ~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~ 224 (459)
T COG0277 155 LGLRVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAA 224 (459)
T ss_pred eEEEEEcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHH
Confidence 689999999999999985 23 69999999999999 99999999999886554444555554443
No 16
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.39 E-value=0.00016 Score=60.53 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=38.1
Q ss_pred eeeeEEEecCCcEEEecCCCChhhHHHHhCCCCc--e--EEEEEEEeeccC
Q 042325 3 WRAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQ--F--ITRARIVLGPAK 49 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~--f--IT~ati~l~Pa~ 49 (145)
-+++++|++||+++++++ .|++|+.|++.+. + ||++++++.|..
T Consensus 146 v~~v~vv~~~G~~~~~~~---~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 146 LESVEVLDRDGEIKTLSN---EELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EEEEEEEeCCCCEEEEEH---HHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 368999999999999974 5999999997554 4 999999999974
No 17
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=93.70 E-value=0.077 Score=47.36 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=56.8
Q ss_pred eeeEEEecCCcE-EEecC---CCChhhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhc
Q 042325 4 RAPFIFTGKGEF-VTCTS---QKDTELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLIST 75 (145)
Q Consensus 4 ~~~evVtgdGev-v~cS~---~~n~DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~ 75 (145)
+.+.+||+.|.+ ..|+. ..-||+-+-++|+-|++ ||++||+..|.|...+.-.+.|.+|+.-..-+.+....
T Consensus 289 Vh~~mVtP~Giiek~Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA~q 366 (613)
T KOG1233|consen 289 VHLNMVTPKGIIEKQCQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVAIQ 366 (613)
T ss_pred EEEEeecCcchhhhhhcCCcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHHHH
Confidence 568899999975 34543 35789988999999999 99999999999998777788899988665555554433
No 18
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=93.14 E-value=0.15 Score=44.37 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=36.1
Q ss_pred eeeeEEEecC-CcEEEecCCCChhhHHHHhCC--CC--ce-EEEEEEEeeccC
Q 042325 3 WRAPFIFTGK-GEFVTCTSQKDTELFYAVLGG--LG--QF-ITRARIVLGPAK 49 (145)
Q Consensus 3 ~~~~evVtgd-Gevv~cS~~~n~DLF~A~~GG--lG--~f-IT~ati~l~Pa~ 49 (145)
-.++++++.+ |++++.+ +.|++|+-|++ .+ .. ||+++++|.|..
T Consensus 148 l~sV~vvd~~~G~~~~~~---~~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 148 ITRVRLLDRRTGEVRWVP---AADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred EeEEEEEECCCCEEEEEE---HHHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 3689999854 9999987 67999999996 22 34 999999999874
No 19
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=90.58 E-value=0.34 Score=40.92 Aligned_cols=42 Identities=26% Similarity=0.158 Sum_probs=33.5
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCCC-C-ce-EEEEEEEeeccC
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGGL-G-QF-ITRARIVLGPAK 49 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GGl-G-~f-IT~ati~l~Pa~ 49 (145)
.++++|+++| .++.+ ..|+.|+.|.+. + .. ||+++++|.|..
T Consensus 152 ~~v~vv~~~G-~~~~~---~~e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 152 TAVELATADG-AGFVP---AAALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred EEEEEECCCC-cEEee---hhhcCcccceeccCCCeEEEEEEEEEecCC
Confidence 6899999999 55554 469999999863 3 35 999999999954
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=90.21 E-value=0.47 Score=40.06 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=35.7
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCC-CC--ce-EEEEEEEeeccC
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGG-LG--QF-ITRARIVLGPAK 49 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GG-lG--~f-IT~ati~l~Pa~ 49 (145)
..++|++++|+++++++ .|++|+-|.+ +. .+ |++++++|.|..
T Consensus 152 ~~v~vv~~~G~v~~~~~---~e~~f~YR~s~~~~~~~iil~a~~~l~~~~ 198 (305)
T PRK12436 152 TEAVVMTGDGELRTLTK---EAFEFGYRKSVFANNHYIILEARFELEEGV 198 (305)
T ss_pred eEEEEEeCCCCEEEEEH---HHhcCcCCCCcCCCCCEEEEEEEEEEcCCC
Confidence 46788899999999986 6799999987 33 35 999999999853
No 21
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=86.48 E-value=1.9 Score=38.61 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=48.7
Q ss_pred eeeeEEEecCCcEEEec---CCCCh--hhHHHHhCCCCce--EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhc
Q 042325 3 WRAPFIFTGKGEFVTCT---SQKDT--ELFYAVLGGLGQF--ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLIST 75 (145)
Q Consensus 3 ~~~~evVtgdGevv~cS---~~~n~--DLF~A~~GGlG~f--IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~ 75 (145)
-.++|+|+++|+++.-- +..|. ||=+-.+|+=|++ ||.++|-+.|.|+.+. +.|..++.|..-|..++++
T Consensus 213 vLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn---~af~gi~sf~~v~k~fv~A 289 (511)
T KOG1232|consen 213 VLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVN---VAFIGIESFDDVQKVFVEA 289 (511)
T ss_pred eeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCccee---EEEEccccHHHHHHHHHHH
Confidence 36899999999987531 23333 5666667888988 9999999999988643 4455556665555555544
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=77.31 E-value=3.9 Score=34.56 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=35.2
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCCC---Cce-EEEEEEEeeccC
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGGL---GQF-ITRARIVLGPAK 49 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GGl---G~f-IT~ati~l~Pa~ 49 (145)
.++++|+++|+++++++ .|+.|+-|.+. +.+ |++++++|.|..
T Consensus 152 ~~v~vv~~~G~~~~~~~---~e~~f~YR~S~~~~~~~ii~~~~~~l~~~~ 198 (307)
T PRK13906 152 DYALCVNEQGSLIKLTT---KELELDYRNSIIQKEHLVVLEAAFTLAPGK 198 (307)
T ss_pred eEEEEEeCCCCEEEEEH---HHccCcCCcccCCCCCEEEEEEEEEECCCC
Confidence 68999999999999986 56889988762 235 999999999843
No 23
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=76.35 E-value=6.8 Score=36.23 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=41.9
Q ss_pred ChhhHHHH--hCCCCce-EEEEEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhc
Q 042325 23 DTELFYAV--LGGLGQF-ITRARIVLGPAKERVKWLRILYSDFSSFSTDQETLIST 75 (145)
Q Consensus 23 n~DLF~A~--~GGlG~f-IT~ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~ 75 (145)
|+||-.-. .|+=|.+ |..+|+++.|.|...+.+-+-+.+.+...+....+++.
T Consensus 237 naDl~~LfeasGseGkLgV~avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~ 292 (564)
T PRK11183 237 NADPRRLFEASGCAGKLAVFAVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILAN 292 (564)
T ss_pred cCCHHHHhhccCCCceEEEEEEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHh
Confidence 44665555 7888999 66999999999998776667788888888877777765
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=72.58 E-value=4.8 Score=33.82 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=35.3
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCCC--C---------ce-EEEEEEEeeccC
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGGL--G---------QF-ITRARIVLGPAK 49 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GGl--G---------~f-IT~ati~l~Pa~ 49 (145)
.++++++.+|+++++++ .|++|+-|-+. . .+ |++++++|.|..
T Consensus 139 ~~V~~~~~~g~~~~~~~---~el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 139 IRAWLLLNGSECVEWSV---HDFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred EEEEEEeCCCCEEEEeH---HHcCcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 68999999999999976 49999999761 1 35 999999998864
No 25
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=62.10 E-value=15 Score=30.65 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=34.8
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCC-C-C-c-e-EEEEEEEeeccCC
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGG-L-G-Q-F-ITRARIVLGPAKE 50 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GG-l-G-~-f-IT~ati~l~Pa~~ 50 (145)
+++++|+++|++++.++ .|+.|+-|-+ + . . . |+++++++.+.+.
T Consensus 129 ~~v~vv~~~G~~~~~~~---~~~~f~YR~S~f~~~~~~iil~a~~~l~~~~~ 177 (284)
T TIGR00179 129 VYATILLATGKTEWLTN---EQLGFGYRTSIFQHKYVGLVLKAEFQLTLGFG 177 (284)
T ss_pred EEEEEEeCCCCEEEEEH---HHccccCCccccCCCCcEEEEEEEEEeccccc
Confidence 68999999999999986 5788888876 2 1 1 4 9999999966543
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=51.36 E-value=25 Score=29.70 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=32.0
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCC-CC---ce-EEEEEEEeeccC
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGG-LG---QF-ITRARIVLGPAK 49 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GG-lG---~f-IT~ati~l~Pa~ 49 (145)
.++++++ +|++++.+++ |+-|+-|-+ ++ .+ ||+++++|.|..
T Consensus 148 ~~V~~~d-~g~v~~~~~~---e~~f~YR~S~~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 148 VEVVAYD-GKKIIRLGKN---EIKFSYRNSIFKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred EEEEEEC-CCEEEEEchh---hccccCccccCCCCCcEEEEEEEEEEecCC
Confidence 4788888 7888888653 777887755 33 45 999999999864
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=50.94 E-value=26 Score=29.80 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=35.9
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCCCCc---e-EEEEEEEeecc
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGGLGQ---F-ITRARIVLGPA 48 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GGlG~---f-IT~ati~l~Pa 48 (145)
..+++++.+|++.+.++ .||-|+-|-+.=+ + |++++++|.|-
T Consensus 138 ~~v~~ld~~G~~~~l~~---~el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 138 VSVEVLDRDGEVRWLSA---EELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred EEEEEEcCCCCEEEEEH---HHhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 57899999999999984 6899999987433 5 99999999996
No 28
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=46.40 E-value=36 Score=28.56 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=33.8
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCCC--Cce-EEEEEEEeeccC
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGGL--GQF-ITRARIVLGPAK 49 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GGl--G~f-IT~ati~l~Pa~ 49 (145)
.++++++ +|++++.++ .|+.|+-|-+. ..+ |++++++|.|..
T Consensus 127 ~~V~~~~-~g~~~~~~~---~e~~f~YR~S~~~~~~iIl~a~f~l~~~~ 171 (273)
T PRK14651 127 HTVEIVH-DGGFHQYSP---DELGFGYRHSGLPPGHVVTRVRLKLRPST 171 (273)
T ss_pred EEEEEEE-CCCEEEEEH---HHccccccccCCCCCEEEEEEEEEECCCC
Confidence 5788887 899998875 67888888762 246 999999999854
No 29
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=36.14 E-value=67 Score=27.32 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=35.2
Q ss_pred eeeEEEecCCcEEEecCCCChhhHHHHhCCC--C-ce-EEEEEEEeeccCC
Q 042325 4 RAPFIFTGKGEFVTCTSQKDTELFYAVLGGL--G-QF-ITRARIVLGPAKE 50 (145)
Q Consensus 4 ~~~evVtgdGevv~cS~~~n~DLF~A~~GGl--G-~f-IT~ati~l~Pa~~ 50 (145)
.++++++.+|++++.++ .|+-|+-|-+. . .+ |++++++|.|..+
T Consensus 149 ~sV~~~d~~g~~~~~~~---~e~~f~YR~S~f~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 149 DKITFIDEKGKTICKKF---KKEEFKYKISPFQNKNTFILKATLNLKKGNK 196 (302)
T ss_pred EEEEEEECCCCEEEEEH---HHcCcccccccCCCCCEEEEEEEEEEcCCCH
Confidence 57899999999988764 67888888763 1 35 9999999998653
No 30
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=34.73 E-value=66 Score=27.72 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=34.6
Q ss_pred eeeEEEecC-CcEEEecCCCChhhHHHHhCC--CC----ce-EEEEEEEeecc
Q 042325 4 RAPFIFTGK-GEFVTCTSQKDTELFYAVLGG--LG----QF-ITRARIVLGPA 48 (145)
Q Consensus 4 ~~~evVtgd-Gevv~cS~~~n~DLF~A~~GG--lG----~f-IT~ati~l~Pa 48 (145)
.++++++.+ |++++.++ .|+.|+-|-+ .. .+ |++++++|.|.
T Consensus 139 ~~V~v~d~~~g~~~~~~~---~e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 139 DYVEALDLATGEFVRLSA---AECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EEEEEEECCCCcEEEEEH---HHcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 578999987 99998885 6889988876 22 46 99999999986
No 31
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=29.53 E-value=79 Score=25.14 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhccCCCCCCCCCeeEEEEeecCCCCC-------CCCCcccccceecccCccEEEEEEEEeeeCCCChh
Q 042325 63 SSFSTDQETLISTTGPSHKVMPDYLEGQLLMSQSPLD-------FYPQSQHQKITSLINQYGIVYLIEVATYYDNKNED 134 (145)
Q Consensus 63 ~~~~~d~~~li~~~~~~~~~~~dyveG~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Y~le~~~~y~~~~~~ 134 (145)
.+.-++...+.... .++|.+=+........| ||-+.-+ ....+.||||.+-|||-.+.+
T Consensus 47 ~e~~~~L~~lr~e~------~~~~~d~~~~~~e~~~nfdeKvk~FfEEhlh-------~deeiR~il~GtgYfDVrd~d 112 (179)
T KOG2107|consen 47 YELDEELDRLREER------GYSYMDICTVCPETLPNFDEKVKSFFEEHLH-------EDEEIRYILEGTGYFDVRDKD 112 (179)
T ss_pred HHHHHHHHHHHHHc------CCceeeEEEEchhhcccHHHHHHHHHHHhcC-------chhheEEEeecceEEeeccCC
Confidence 34556666666664 47888776555555666 6654322 445799999999999865443
No 32
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=23.73 E-value=88 Score=21.94 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=20.6
Q ss_pred eeEEEecCCcEEEecCCCChhhHHHHhCC
Q 042325 5 APFIFTGKGEFVTCTSQKDTELFYAVLGG 33 (145)
Q Consensus 5 ~~evVtgdGevv~cS~~~n~DLF~A~~GG 33 (145)
++--|+.||+++..-+. |..|+.|++-|
T Consensus 41 AIGyV~~dg~I~QTIPq-nk~L~qaLidG 68 (86)
T PF02762_consen 41 AIGYVTQDGKILQTIPQ-NKSLYQALIDG 68 (86)
T ss_dssp EEEEEETTSEEEEE--S-SS-HHHHHHHH
T ss_pred eEEEEcCCCcEEEecCC-CchHHHHHHhc
Confidence 56779999999987764 77799998865
No 33
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=23.10 E-value=91 Score=19.98 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=19.9
Q ss_pred CCCeeEEEEeecCCCCCCCCCcccccceecccCccEEEEE
Q 042325 83 MPDYLEGQLLMSQSPLDFYPQSQHQKITSLINQYGIVYLI 122 (145)
Q Consensus 83 ~~dyveG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~l 122 (145)
.|||+....+. |..+..|...+.++.|.|+.
T Consensus 14 pFD~lQ~s~l~---------~gtPv~i~H~S~D~~W~fV~ 44 (54)
T PF12913_consen 14 PFDYLQNSALH---------PGTPVYILHTSRDGAWAFVQ 44 (54)
T ss_dssp T--TTEEEEE----------TT-EEEEEEE-TTSSEEEEE
T ss_pred CchhhhhcccC---------CCCCEEEEEECCCCCEEEEe
Confidence 68988877766 55667778888888999874
No 34
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=21.85 E-value=30 Score=27.74 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=0.0
Q ss_pred EEEEeeccCCeEEEEEEEecChhhHHHHHHHHHhccCCCCCCCCCeeEEEEeec
Q 042325 41 ARIVLGPAKERVKWLRILYSDFSSFSTDQETLISTTGPSHKVMPDYLEGQLLMS 94 (145)
Q Consensus 41 ati~l~Pa~~~~~~~~~~y~~~~~~~~d~~~li~~~~~~~~~~~dyveG~v~~~ 94 (145)
+|||++|++.... +..-.++++++++.+.++..+ +|+|=+.++-
T Consensus 1 VTlq~~p~f~L~~--~~~~~~~~e~l~~~~~~~~~~--------~h~e~~wfP~ 44 (259)
T PF04030_consen 1 VTLQCVPAFRLRE--RERPEPLDEVLENLDELLASH--------DHFEFFWFPY 44 (259)
T ss_dssp ------------------------------------------------------
T ss_pred CCccccccccccc--ccccccccccccccccccccc--------cccccccccc
Confidence 6899999998642 223457888889888888654 4555455554
No 35
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=21.78 E-value=24 Score=26.66 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=14.9
Q ss_pred CccEEEEEEEEeeeCCCC
Q 042325 115 QYGIVYLIEVATYYDNKN 132 (145)
Q Consensus 115 ~~~~~Y~le~~~~y~~~~ 132 (145)
+++-.||||-+.||.+..
T Consensus 54 G~GqfyCi~CaRyFi~~~ 71 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAK 71 (129)
T ss_pred CCceeehhhhhhhhcchH
Confidence 457999999999997653
No 36
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.53 E-value=95 Score=19.12 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=14.6
Q ss_pred eEEEecCCcEEEecCCCCh
Q 042325 6 PFIFTGKGEFVTCTSQKDT 24 (145)
Q Consensus 6 ~evVtgdGevv~cS~~~n~ 24 (145)
+-|+|.||+.+.+-...+.
T Consensus 8 aiVlT~dGeF~~ik~~~~~ 26 (56)
T PF12791_consen 8 AIVLTPDGEFIKIKRKPGM 26 (56)
T ss_pred EEEEcCCCcEEEEeCCCCC
Confidence 5689999999988765543
Done!