Query 042326
Match_columns 163
No_of_seqs 156 out of 1040
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:09:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03156 GDSL esterase/lipase; 99.8 5.8E-21 1.3E-25 164.3 4.6 55 109-163 26-80 (351)
2 PRK15381 pathogenicity island 99.6 1.9E-15 4.2E-20 134.8 5.3 51 106-163 138-188 (408)
3 COG3240 Phospholipase/lecithin 94.9 0.036 7.9E-07 50.5 4.3 24 106-129 25-48 (370)
4 PF04834 Adeno_E3_14_5: Early 36.2 1.1E+02 0.0025 23.5 5.3 29 37-65 23-64 (97)
5 PF08282 Hydrolase_3: haloacid 34.4 19 0.00041 27.2 0.8 16 110-125 202-217 (254)
6 COG0561 Cof Predicted hydrolas 27.4 31 0.00067 27.7 1.0 18 110-127 205-222 (264)
7 PRK10976 putative hydrolase; P 24.8 36 0.00078 27.3 1.0 17 110-126 206-222 (266)
8 PRK10513 sugar phosphate phosp 24.7 35 0.00076 27.4 0.9 17 110-126 212-228 (270)
9 TIGR01486 HAD-SF-IIB-MPGP mann 24.3 42 0.00092 27.1 1.3 18 110-127 194-211 (256)
10 PRK03669 mannosyl-3-phosphogly 23.9 43 0.00093 27.4 1.3 17 109-125 205-221 (271)
11 TIGR02463 MPGP_rel mannosyl-3- 23.8 40 0.00087 26.3 1.0 17 109-125 194-210 (221)
12 TIGR01487 SPP-like sucrose-pho 23.1 37 0.0008 26.5 0.7 15 111-125 164-178 (215)
13 PF12710 HAD: haloacid dehalog 22.2 54 0.0012 24.3 1.4 15 109-123 174-188 (192)
14 PRK01158 phosphoglycolate phos 22.2 42 0.00091 26.1 0.9 16 110-125 173-188 (230)
15 PRK10528 multifunctional acyl- 20.9 61 0.0013 25.2 1.5 15 110-124 10-24 (191)
16 PF15325 MRI: Modulator of ret 20.6 4.3E+02 0.0094 20.8 6.3 11 38-48 9-19 (106)
17 PRK15126 thiamin pyrimidine py 20.3 45 0.00097 27.0 0.7 17 109-125 203-219 (272)
No 1
>PLN03156 GDSL esterase/lipase; Provisional
Probab=99.82 E-value=5.8e-21 Score=164.33 Aligned_cols=55 Identities=56% Similarity=0.970 Sum_probs=50.5
Q ss_pred CcCEEEEcCCcccccCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q 042326 109 LVPALFVIGDSSVDSGTNNFLGTFARADRLPYGRDFDTHQPTGRFSNGRIPVDYL 163 (163)
Q Consensus 109 ~fpAIFvFGDSLSDTGNn~~l~t~~~a~~pPYGitffg~~PTGRFSDGRliiDFI 163 (163)
.+++||+||||++||||++++.+..+++++|||++|++++|||||||||+|+|||
T Consensus 26 ~~~aifvFGDSl~D~GN~~~l~~~~~~~~~pyG~~f~~~~ptGRfSnGr~~~D~i 80 (351)
T PLN03156 26 KVPAIIVFGDSSVDAGNNNQISTVAKSNFEPYGRDFPGGRPTGRFCNGRIAPDFI 80 (351)
T ss_pred CCCEEEEecCcCccCCCccccccccccCCCCCCCCCCCCCCCccccCCChhhhhH
Confidence 3799999999999999998877666889999999999877999999999999996
No 2
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=99.57 E-value=1.9e-15 Score=134.81 Aligned_cols=51 Identities=35% Similarity=0.402 Sum_probs=44.7
Q ss_pred CCCCcCEEEEcCCcccccCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q 042326 106 SHPLVPALFVIGDSSVDSGTNNFLGTFARADRLPYGRDFDTHQPTGRFSNGRIPVDYL 163 (163)
Q Consensus 106 ~~~~fpAIFvFGDSLSDTGNn~~l~t~~~a~~pPYGitffg~~PTGRFSDGRliiDFI 163 (163)
....+++||+||||++||||+++..+. ..+||||++| +|||||||+|+|||
T Consensus 138 ~~~~~~ai~vFGDSlsDtGnn~y~~t~--~~~PPyG~~f-----tGRFSNG~v~~DfL 188 (408)
T PRK15381 138 SLGDITRLVFFGDSLSDSLGRMFEKTH--HILPSYGQYF-----GGRFTNGFTWTEFL 188 (408)
T ss_pred ccCCCCeEEEeCCccccCCCccccccc--cCCCCCCCCC-----CcccCCCchhhhee
Confidence 446799999999999999998876543 5689999998 89999999999996
No 3
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=94.85 E-value=0.036 Score=50.52 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=20.1
Q ss_pred CCCCcCEEEEcCCcccccCCCccc
Q 042326 106 SHPLVPALFVIGDSSVDSGTNNFL 129 (163)
Q Consensus 106 ~~~~fpAIFvFGDSLSDTGNn~~l 129 (163)
..+.+..|.+||||++|+|+....
T Consensus 25 ~~~~~~~l~vfGDSlSDsg~~~~~ 48 (370)
T COG3240 25 SLAPFQRLVVFGDSLSDSGNYYRP 48 (370)
T ss_pred cccccceEEEeccchhhcccccCc
Confidence 345689999999999999997653
No 4
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=36.21 E-value=1.1e+02 Score=23.54 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHH-Hhhc------------cCCccccCCcccc
Q 042326 37 TLLVAVAKALTL-SAIF------------NPSRALEFPEDFF 65 (163)
Q Consensus 37 ~~~~~~~~~~~~-s~~f------------~~~~~~~~~~~~~ 65 (163)
..|++++.++++ ||+| +...+..+|++..
T Consensus 23 ~Wl~~i~~~~v~~~t~~~l~iYp~f~~gWn~~~~~d~P~~P~ 64 (97)
T PF04834_consen 23 YWLYAIGIVLVFCSTFFSLAIYPCFDFGWNHPFAFDLPVYPS 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeeccccCcccccCCCCCC
Confidence 556666555543 4443 4555666777765
No 5
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=34.39 E-value=19 Score=27.17 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.0
Q ss_pred cCEEEEcCCcccccCC
Q 042326 110 VPALFVIGDSSVDSGT 125 (163)
Q Consensus 110 fpAIFvFGDSLSDTGN 125 (163)
...+++||||.+|..-
T Consensus 202 ~~~~~~~GD~~ND~~M 217 (254)
T PF08282_consen 202 PEDIIAFGDSENDIEM 217 (254)
T ss_dssp GGGEEEEESSGGGHHH
T ss_pred cceeEEeecccccHhH
Confidence 4679999999999643
No 6
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=27.39 E-value=31 Score=27.74 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.5
Q ss_pred cCEEEEcCCcccccCCCc
Q 042326 110 VPALFVIGDSSVDSGTNN 127 (163)
Q Consensus 110 fpAIFvFGDSLSDTGNn~ 127 (163)
...+++||||.+|.....
T Consensus 205 ~~~v~afGD~~ND~~Ml~ 222 (264)
T COG0561 205 LEEVIAFGDSTNDIEMLE 222 (264)
T ss_pred HHHeEEeCCccccHHHHH
Confidence 347999999999976654
No 7
>PRK10976 putative hydrolase; Provisional
Probab=24.77 E-value=36 Score=27.31 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=13.8
Q ss_pred cCEEEEcCCcccccCCC
Q 042326 110 VPALFVIGDSSVDSGTN 126 (163)
Q Consensus 110 fpAIFvFGDSLSDTGNn 126 (163)
...+++||||.+|..-.
T Consensus 206 ~~~viafGD~~NDi~Ml 222 (266)
T PRK10976 206 LKDCIAFGDGMNDAEML 222 (266)
T ss_pred HHHeEEEcCCcccHHHH
Confidence 46799999999996553
No 8
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=24.74 E-value=35 Score=27.37 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=13.5
Q ss_pred cCEEEEcCCcccccCCC
Q 042326 110 VPALFVIGDSSVDSGTN 126 (163)
Q Consensus 110 fpAIFvFGDSLSDTGNn 126 (163)
...+++||||.+|..-.
T Consensus 212 ~~~v~afGD~~NDi~Ml 228 (270)
T PRK10513 212 PEEVMAIGDQENDIAMI 228 (270)
T ss_pred HHHEEEECCchhhHHHH
Confidence 45799999999996443
No 9
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=24.27 E-value=42 Score=27.08 Aligned_cols=18 Identities=22% Similarity=0.147 Sum_probs=14.8
Q ss_pred cCEEEEcCCcccccCCCc
Q 042326 110 VPALFVIGDSSVDSGTNN 127 (163)
Q Consensus 110 fpAIFvFGDSLSDTGNn~ 127 (163)
...++.||||.+|..-..
T Consensus 194 ~~~~~a~GD~~ND~~Ml~ 211 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLE 211 (256)
T ss_pred CceEEEEcCCHhhHHHHH
Confidence 567999999999976544
No 10
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.87 E-value=43 Score=27.43 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.9
Q ss_pred CcCEEEEcCCcccccCC
Q 042326 109 LVPALFVIGDSSVDSGT 125 (163)
Q Consensus 109 ~fpAIFvFGDSLSDTGN 125 (163)
....++.||||.+|..-
T Consensus 205 ~~~~viafGDs~NDi~M 221 (271)
T PRK03669 205 TRPTTLGLGDGPNDAPL 221 (271)
T ss_pred CCceEEEEcCCHHHHHH
Confidence 45789999999999644
No 11
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=23.80 E-value=40 Score=26.27 Aligned_cols=17 Identities=18% Similarity=0.049 Sum_probs=13.7
Q ss_pred CcCEEEEcCCcccccCC
Q 042326 109 LVPALFVIGDSSVDSGT 125 (163)
Q Consensus 109 ~fpAIFvFGDSLSDTGN 125 (163)
....++.||||.+|..-
T Consensus 194 ~~~~vi~~GD~~NDi~m 210 (221)
T TIGR02463 194 PDVKTLGLGDGPNDLPL 210 (221)
T ss_pred CCCcEEEECCCHHHHHH
Confidence 35679999999999654
No 12
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=23.15 E-value=37 Score=26.52 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=12.3
Q ss_pred CEEEEcCCcccccCC
Q 042326 111 PALFVIGDSSVDSGT 125 (163)
Q Consensus 111 pAIFvFGDSLSDTGN 125 (163)
..+++||||.+|..-
T Consensus 164 ~~~i~iGDs~ND~~m 178 (215)
T TIGR01487 164 EEVAAIGDSENDIDL 178 (215)
T ss_pred HHEEEECCCHHHHHH
Confidence 459999999999654
No 13
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=22.17 E-value=54 Score=24.31 Aligned_cols=15 Identities=33% Similarity=0.266 Sum_probs=12.2
Q ss_pred CcCEEEEcCCccccc
Q 042326 109 LVPALFVIGDSSVDS 123 (163)
Q Consensus 109 ~fpAIFvFGDSLSDT 123 (163)
....++.+|||.+|.
T Consensus 174 ~~~~~~~iGDs~~D~ 188 (192)
T PF12710_consen 174 DPDRVIAIGDSINDL 188 (192)
T ss_dssp TCCEEEEEESSGGGH
T ss_pred CCCeEEEEECCHHHH
Confidence 356788999999995
No 14
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=22.17 E-value=42 Score=26.08 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=13.0
Q ss_pred cCEEEEcCCcccccCC
Q 042326 110 VPALFVIGDSSVDSGT 125 (163)
Q Consensus 110 fpAIFvFGDSLSDTGN 125 (163)
...++.||||.+|..-
T Consensus 173 ~~~~i~~GD~~NDi~m 188 (230)
T PRK01158 173 PEEVAAIGDSENDLEM 188 (230)
T ss_pred HHHEEEECCchhhHHH
Confidence 4568999999999544
No 15
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=20.94 E-value=61 Score=25.20 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.5
Q ss_pred cCEEEEcCCcccccC
Q 042326 110 VPALFVIGDSSVDSG 124 (163)
Q Consensus 110 fpAIFvFGDSLSDTG 124 (163)
...|..||||++.-.
T Consensus 10 ~~~iv~~GDSit~G~ 24 (191)
T PRK10528 10 ADTLLILGDSLSAGY 24 (191)
T ss_pred CCEEEEEeCchhhcC
Confidence 468999999999753
No 16
>PF15325 MRI: Modulator of retrovirus infection
Probab=20.56 E-value=4.3e+02 Score=20.82 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q 042326 38 LLVAVAKALTL 48 (163)
Q Consensus 38 ~~~~~~~~~~~ 48 (163)
-+|-||+.+||
T Consensus 9 E~VDVALGILI 19 (106)
T PF15325_consen 9 EMVDVALGILI 19 (106)
T ss_pred HHHHHHHHHhh
Confidence 46888888887
No 17
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=20.28 E-value=45 Score=27.03 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=13.4
Q ss_pred CcCEEEEcCCcccccCC
Q 042326 109 LVPALFVIGDSSVDSGT 125 (163)
Q Consensus 109 ~fpAIFvFGDSLSDTGN 125 (163)
....+++|||+.+|..-
T Consensus 203 ~~~~v~afGD~~NDi~M 219 (272)
T PRK15126 203 SLADCMAFGDAMNDREM 219 (272)
T ss_pred CHHHeEEecCCHHHHHH
Confidence 34679999999999544
Done!