BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042327
(911 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 82/148 (55%), Gaps = 7/148 (4%)
Query: 509 VREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSR 568
++ NVR L+L N++ ++ + +L L L N+ +PN F + +LK L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 569 IKLKSFPLGI-SKLVSLQQLDLSYSSIKELPRELY-ALVNLKCLNLEHAEELITIPQQVI 626
+L+S P G+ KL +L L+L+++ ++ LP+ ++ L NL L+L + +L ++P+ V
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVF 177
Query: 627 SNFSRLHVLRMYGTVSLNFLESLKDSIL 654
++L LR+Y N L+S+ D +
Sbjct: 178 DKLTQLKDLRLYQ----NQLKSVPDGVF 201
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 514 NVRRLSLMQNEITNL--KEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571
+ ++L L N++++L K L L+L++N+ +P F+ + +L+ L ++ KL
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 572 KSFPLGI-SKLVSLQQLDLSYSSIKELPRELY-ALVNLKCLNLEHAEELITIPQQVISNF 629
++ P+G+ +LV+L +L L + +K LP ++ +L L L+L + EL ++P+ V
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKL 156
Query: 630 SRLHVLRMY 638
+ L LR+Y
Sbjct: 157 TSLKELRLY 165
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 509 VREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSR 568
++ NVR L+L N++ ++ + +L L L N+ +PN F + +LK L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 569 IKLKSFPLGI-SKLVSLQQLDLSYSSIKELPRELY-ALVNLKCLNLEHAEELITIPQQVI 626
+L+S P G+ KL +L L L ++ ++ LP+ ++ L NL L+L++ +L ++P+ V
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN-NQLQSLPEGVF 177
Query: 627 SNFSRLHVLRMYGTVSLNFLESLKDSIL 654
++L L + N L+S+ D +
Sbjct: 178 DKLTQLKQLSLND----NQLKSVPDGVF 201
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 530 EIPTCPHLLTLFLD--NNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQ 586
+PT T +LD N +PN F + SL L L KL+S P G+ +KL SL
Sbjct: 21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80
Query: 587 LDLSYSSIKELPRELY-ALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNF 645
L+LS + ++ LP ++ L LK L L + +L ++P V ++L LR+Y N
Sbjct: 81 LNLSTNQLQSLPNGVFDKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLY----QNQ 135
Query: 646 LESLKDSIL 654
L+S+ D +
Sbjct: 136 LKSVPDGVF 144
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 524 EITNLKEIPT-----CPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI 578
E +LK +P L L+L N+ +PN F + SL LNLS +L+S P G+
Sbjct: 36 ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95
Query: 579 -SKLVSLQQLDLSYSSIKELPRELY-ALVNLKCLNLEHAEELITIPQQVISNFSRLHVLR 636
KL L++L L+ + ++ LP ++ L LK L L + +L ++P V + L +
Sbjct: 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYIW 154
Query: 637 MY 638
++
Sbjct: 155 LH 156
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 536 HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQLDLSYSSI 594
L TL L NN+ +P F ++ L L L +LKS P G+ +L L++L L+ + +
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 595 KELPRELY-ALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYG 639
+ +P + L NL+ L+L +L ++P +L + ++G
Sbjct: 144 QSIPAGAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTITLFG 188
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 540 LFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQLDLSYSSIKELP 598
L LD N+ + F + L L L+ +L S PLG+ L L +L L + +K LP
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 599 RELY-ALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESL 649
++ L LK L L + +L +IP + L L ++S N L+S+
Sbjct: 124 SGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTL----SLSTNQLQSV 170
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 536 HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQLDLSYSSI 594
L TL L NN+ +P F ++ L L L +LKS P G+ +L L++L L+ + +
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 595 KELPRELY-ALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYG 639
+ +P + L NL+ L+L +L ++P +L + ++G
Sbjct: 144 QSIPAGAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTITLFG 188
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 540 LFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQLDLSYSSIKELP 598
L LD N+ + F + L L L+ +L S PLG+ L L +L L + +K LP
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 599 RELY-ALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESL 649
++ L LK L L + +L +IP + L L ++S N L+S+
Sbjct: 124 SGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTL----SLSTNQLQSV 170
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 540 LFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQLDLSYSSIKELP 598
L+L+NN+ K+ F ++ +L+ L + KL + P G+ KL L QLDL+ + +K +P
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 599 RELYALVNLKCL 610
R A NLK L
Sbjct: 98 RG--AFDNLKSL 107
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 516 RRLSLMQNEITNLKEIPTCPHLLTL---FLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK 572
+RL L N+IT L E HL+ L + ++N+ IP F + L L+L+ LK
Sbjct: 36 QRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 573 SFPLG 577
S P G
Sbjct: 95 SIPRG 99
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 515 VRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK 572
R L L +N I L E + PHL L L+ N + F + +L+ L L +LK
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 573 SFPLGI-SKLVSLQQLDLSYSSIKELPRELYA-LVNLKCLNLEHAEELITIPQQVISNFS 630
PLG+ + L +L +LD+S + I L ++ L NLK L + +L+ I + S +
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLN 152
Query: 631 RLHVLRM 637
L L +
Sbjct: 153 SLEQLTL 159
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 517 RLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF 574
+LSL QN+I +L + L L+L N+ +PN F + LK L L +LKS
Sbjct: 56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
Query: 575 PLGI-SKLVSLQQL 587
P GI +L SLQ++
Sbjct: 116 PDGIFDRLTSLQKI 129
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQLDL 589
IPT +L L+ +N+ K+ F + L L+L +L P G+ KL L QL L
Sbjct: 36 IPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 93
Query: 590 SYSSIKELPRELYALVNLKCL 610
+ + +K +PR A NLK L
Sbjct: 94 NDNQLKSIPRG--AFDNLKSL 112
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 518 LSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP 575
L L N+IT L+ L L LDNN+ +P F + L L+L+ +LKS P
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 576 LG 577
G
Sbjct: 103 RG 104
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQLDL 589
IPT +L L+ +N+ K+ F + L L+L +L P G+ KL L QL L
Sbjct: 28 IPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 590 SYSSIKELPRELYALVNLKCL 610
+ + +K +PR A NLK L
Sbjct: 86 NDNQLKSIPRG--AFDNLKSL 104
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 518 LSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP 575
L L N+IT L+ L L LDNN+ +P F + L L+L+ +LKS P
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 576 LG 577
G
Sbjct: 95 RG 96
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQLDL 589
IPT +L L++ N+ K+ F + L LNL+ +L + P+G+ KL L L L
Sbjct: 38 IPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 590 SYSSIKELPRELYALVNLKCL 610
+ +K +P ++ NLK L
Sbjct: 96 HINQLKSIPMGVFD--NLKSL 114
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQLDL 589
IPT +L L+ +N K+ F + L L+L +L P G+ KL L QL L
Sbjct: 28 IPTTTQVLYLY--DNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 590 SYSSIKELPRELYALVNLKCL 610
+ + +K +PR A NL+ L
Sbjct: 86 NDNQLKSIPRG--AFDNLRSL 104
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 518 LSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP 575
L L N IT L+ L L LDNN+ +P F + L L+L+ +LKS P
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 576 LG 577
G
Sbjct: 95 RG 96
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 514 NVRRLSLMQNEITNLKEI--PTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571
N+R L L N + L E L L L NN + + + F+ M L+ L LS+ ++
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 572 KSFPLGI----SKLVSLQQLDLSYSSIKELP 598
FP+ + +KL L LDLS + +K+LP
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 518 LSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-- 575
L + N++ +L+ T L L LD N+ +IP DF + ++ L S KLK P
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637
Query: 576 LGISKLVSLQQLDLSYSSIKELPREL------YALVNLKCLNLEHAEELITIPQQVISNF 629
+ +D SY+ I R + Y +N + L + E+ P ++ +
Sbjct: 638 FNAKSVYVXGSVDFSYNKIGSEGRNISCSXDDYKGINASTVTLSY-NEIQKFPTELFATG 696
Query: 630 SRLHVL 635
S + +
Sbjct: 697 SPISTI 702
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 26/125 (20%)
Query: 540 LFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI--------------------- 578
L+L +N+ K+ F + +LK L L +L + P+G+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 579 ----SKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHV 634
+LV L++L + + + ELPR + L +L L L+ +L +IP S L
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTH 163
Query: 635 LRMYG 639
++G
Sbjct: 164 AYLFG 168
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 563 VLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIP 622
L+LS +++ + I K L +L L+ +S+ ELP E+ L NL+ L+L H L ++P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
Query: 623 QQVISNF 629
++ S F
Sbjct: 287 AELGSCF 293
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 537 LLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKE 596
L L+L+ N ++P + + + +L+VL+LS +L S P + L+ + +
Sbjct: 249 LTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT 307
Query: 597 LPRELYALVNLKCLNLE 613
LP E L NL+ L +E
Sbjct: 308 LPWEFGNLCNLQFLGVE 324
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 540 LFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPR 599
L L N + I + F+Y L L L+ L P I L +L+ LDLS++ + LP
Sbjct: 229 LDLSNLQIFNISANIFKY-DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 600 ELYALVNLK 608
EL + LK
Sbjct: 288 ELGSCFQLK 296
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 535 PHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSS 593
P L TL L +N +P F+Y+ L+ L L ++S P +++ SL++LDL
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--- 139
Query: 594 IKELPRELY-------ALVNLKCLNL 612
EL R Y LVNL+ LNL
Sbjct: 140 --ELKRLEYISEAAFEGLVNLRYLNL 163
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 527 NLKEIPTCPHLL-------TLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI- 578
N++E+P+ HL ++ +N+ ++P F M LK LNL+ +LKS P GI
Sbjct: 157 NIEEMPS--HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIF 214
Query: 579 SKLVSLQQL 587
+L SLQ++
Sbjct: 215 DRLTSLQKI 223
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 535 PHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSS 593
P L TL L +N +P F+Y+ L+ L L ++S P +++ SL++LDL
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG--- 139
Query: 594 IKELPRELY-------ALVNLKCLNL 612
EL R Y LVNL+ LNL
Sbjct: 140 --ELKRLEYISEAAFEGLVNLRYLNL 163
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 509 VREWENVRRLSLMQNEITNLKEIPT-----CPHLLTLFLDNNESLKIPNDFFQYMHSLKV 563
V ++++R L ++Q +++ I +L TL L +N IPN F Y+ LK
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140
Query: 564 LNLSRIKLKSFP-LGISKLVSLQQLDLSYSSIKELPRELY-------ALVNLKCLNL 612
L L ++S P +++ SL++LDL EL R Y L NL+ LNL
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLG-----ELKRLSYISEGAFEGLSNLRYLNL 192
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 522 QNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKL 581
N I+++ + P L +L+L NN+ I + L L+L +++ + +++L
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRI-VPLARL 175
Query: 582 VSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEEL 618
LQ L LS + I +L R L L NL L L E L
Sbjct: 176 TKLQNLYLSKNHISDL-RALRGLKNLDVLELFSQEAL 211
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 500 GVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMH 559
G G+T V+ N+ L L N+IT+L + + L L N + +
Sbjct: 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQ 107
Query: 560 SLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEEL 618
S+K L+L+ ++ PL + L +LQ L L + I + L L NL+ L++ +A+
Sbjct: 108 SIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVS 164
Query: 619 ITIPQQVISNFSRLHVLR 636
P ++N S+L L+
Sbjct: 165 DLTP---LANLSKLTTLK 179
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 22/126 (17%)
Query: 260 VLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGFMEAHRKFKMVCLSDNDSW 319
+L+LDDVW+ L + + +++ TTR + V + + V S
Sbjct: 245 LLILDDVWDSWVL--------KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESS----- 291
Query: 320 DLFQQKVGKEILN-----SHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYA 374
++ G EIL+ D+ E A ++ +EC G PL + IG + + P W Y
Sbjct: 292 --LGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYY 347
Query: 375 IQLLSS 380
++ L +
Sbjct: 348 LKQLQN 353
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 518 LSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP 575
L L N+I+ L+ + HL L L NN+ KI F + L+ L +S+ L P
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 576 LGISKLVSLQQLDLSYSSIKELPRELYA-LVNLKCLNL 612
+ SL +L + + I+++P+ +++ L N+ C+ +
Sbjct: 119 PNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 511 EWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHS-LKVLNLSRI 569
+ +++++L + QN ++ ++ C +L N S + + F+ + +KVL+L
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431
Query: 570 KLKSFPLGISKLVSLQQLDLSYSSIKELPRELY 602
K+KS P + KL +LQ+L+++ + +K +P ++
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 22/126 (17%)
Query: 260 VLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGFMEAHRKFKMVCLSDNDSW 319
+L+LDDVW+ L + + +++ TTR + V + + V S
Sbjct: 239 LLILDDVWDSWVL--------KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESS----- 285
Query: 320 DLFQQKVGKEILN-----SHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYA 374
++ G EIL+ D+ E A ++ +EC G PL + IG + + P W Y
Sbjct: 286 --LGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYY 341
Query: 375 IQLLSS 380
++ L +
Sbjct: 342 LKQLQN 347
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin
Length = 679
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQT---VARECGGLPLALITIGRAMACK 365
K+ C+S + D + I+N D + L +A +CG +P+ ++ C+
Sbjct: 365 KIECVSAETTEDCIAK-----IMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 419
Query: 366 KTPEEWRYAIQLLSSSASQF 385
TPE +AI ++ SAS
Sbjct: 420 DTPEAGYFAIAVVKKSASDL 439
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 137
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 138 TLPPGLLTPTPKLEKLSL 155
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 137
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 138 TLPPGLLTPTPKLEKLSL 155
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 137
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 138 TLPPGLLTPTPKLEKLSL 155
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 137
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 138 TLPPGLLTPTPKLEKLSL 155
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 137
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 138 TLPPGLLTPTPKLEKLSL 155
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 137
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 138 TLPPGLLTPTPKLEKLSL 155
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 529 KEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL-KSFPLGISKLVSLQQL 587
K++P P L L NN+ +I + F+ + +L L L K+ K P + LV L++L
Sbjct: 48 KDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105
Query: 588 DLSYSSIKELPREL-YALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSL 643
LS + +KELP ++ L L+ H E+ + + V + +++ V+ + GT L
Sbjct: 106 YLSKNQLKELPEKMPKTLQELRV----HENEITKVRKSVFNGLNQMIVVEL-GTNPL 157
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 529 KEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL-KSFPLGISKLVSLQQL 587
K++P P L L NN+ +I + F+ + +L L L K+ K P + LV L++L
Sbjct: 48 KDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105
Query: 588 DLSYSSIKELPREL-YALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSL 643
LS + +KELP ++ L L+ H E+ + + V + +++ V+ + GT L
Sbjct: 106 YLSKNQLKELPEKMPKTLQELRV----HENEITKVRKSVFNGLNQMIVVEL-GTNPL 157
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound
Sulfate Ions
Length = 342
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQT---VARECGGLPLALITIGRAMACK 365
K+ C+S + D + I+N D + L +A +CG +P+ ++ C+
Sbjct: 28 KIECVSAETTEDCIAK-----IMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 82
Query: 366 KTPEEWRYAIQLLSSSASQF 385
TPE +A+ ++ SAS
Sbjct: 83 DTPEAGYFAVAVVKKSASDL 102
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 343
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQT---VARECGGLPLALITIGRAMACK 365
K+ C+S + D + I+N D + L +A +CG +P+ ++ C+
Sbjct: 29 KIECVSAETTEDCIAK-----IMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 83
Query: 366 KTPEEWRYAIQLLSSSASQF 385
TPE +A+ ++ SAS
Sbjct: 84 DTPEAGYFAVAVVKKSASDL 103
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 137
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 138 TLPPGLLTPTPKLEKLSL 155
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 138
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 139 TLPPGLLTPTPKLEKLSL 156
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated)
pdb|2HAV|B Chain B, Apo-Human Serum Transferrin (Glycosylated)
Length = 676
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQT---VARECGGLPLALITIGRAMACK 365
K+ C+S + D + I+N D + L +A +CG +P+ ++ C+
Sbjct: 362 KIECVSAETTEDCIAK-----IMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 416
Query: 366 KTPEEWRYAIQLLSSSASQF 385
TPE +A+ ++ SAS
Sbjct: 417 DTPEAGYFAVAVVKKSASDL 436
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin
Length = 679
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQT---VARECGGLPLALITIGRAMACK 365
K+ C+S + D + I+N D + L +A +CG +P+ ++ C+
Sbjct: 365 KIECVSAETTEDCIAK-----IMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 419
Query: 366 KTPEEWRYAIQLLSSSASQF 385
TPE +A+ ++ SAS
Sbjct: 420 DTPEAGYFAVAVVKKSASDL 439
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|B Chain B, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|C Chain C, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|D Chain D, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|E Chain E, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|F Chain F, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V8X|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 698
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQT---VARECGGLPLALITIGRAMACK 365
K+ C+S + D + I+N D + L +A +CG +P+ ++ C+
Sbjct: 384 KIECVSAETTEDCIAK-----IMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 438
Query: 366 KTPEEWRYAIQLLSSSASQF 385
TPE +A+ ++ SAS
Sbjct: 439 DTPEAGYFAVAVVKKSASDL 458
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 540 LFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPL------GISKLVSLQQLDLSYSS 593
L L NN+ L F LK NL+++ L L S L SL+ L L Y++
Sbjct: 227 LSLANNQLLATSESTFS---GLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 594 IKEL-PRELYALVNLKCLNLEHA 615
I+ L PR Y L NL+ L+L+ A
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLKRA 306
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 137
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 138 TLPPGLLTPTPKLEKLSL 155
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|D Chain D, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
Length = 679
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQT---VARECGGLPLALITIGRAMACK 365
K+ C+S + D + I+N D + L +A +CG +P+ ++ C+
Sbjct: 365 KIECVSAETTEDCIAK-----IMNGEADAMSLDGGFVYIAGKCGLVPVLAENYDKSDNCE 419
Query: 366 KTPEEWRYAIQLLSSSASQF 385
TPE +A+ ++ SAS
Sbjct: 420 DTPEAGYFAVAVVKKSASDL 439
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 561 LKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI 619
L L+LS +L+S PL L +L LD+S++ + LP L L L+ L L+ EL
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELK 137
Query: 620 TIPQQVISNFSRLHVLRM 637
T+P +++ +L L +
Sbjct: 138 TLPPGLLTPTPKLEKLSL 155
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 513 ENVRRLSLMQNEITN--LKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIK 570
E++ L+L N +T + +P P + L L NN + IP D ++ +L+ LN++ +
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQ 484
Query: 571 LKSFPLGI-SKLVSLQQL 587
LKS P G+ +L SLQ +
Sbjct: 485 LKSVPDGVFDRLTSLQYI 502
>pdb|1MDX|A Chain A, Crystal Structure Of Arnb Transferase With Pyridoxal 5'
Phosphate
pdb|1MDZ|A Chain A, Crystal Structure Of Arnb Aminotransferase With
Cycloserine And Pyridoxal 5' Phosphate
Length = 393
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 10/130 (7%)
Query: 774 VFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKP 833
V AP KY N P + I+ + + + A ++ + +LP ++P
Sbjct: 235 VLAPGYKY----NLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLP------FQP 284
Query: 834 LSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKTWWINLKWEDEATQDAFRPCFK 893
LSLP + + F ++ +C ++ + K L + TQ +R F
Sbjct: 285 LSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFP 344
Query: 894 SLYPAGARWN 903
+L WN
Sbjct: 345 TLTLPDTEWN 354
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 872 TWWINLKWEDEATQDAFRPCFKSLYPAG 899
T W++L W DE + FR ++ L P G
Sbjct: 187 TKWVHLNWGDEGLKRXFRRIYRHLRPGG 214
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 272 LTKVGVPLPRPKNMASKVVFTTRSEEV---CGFMEAHRKFKMVCLSDNDSWDLFQQKVGK 328
L K VP PR + + ++ +E V C + E+ + +V + N DL+ Q
Sbjct: 17 LMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNY-LVDVDGNRMLDLYSQISSI 75
Query: 329 EILNSHPDILELAQ 342
I SHP +++L Q
Sbjct: 76 PIGYSHPALVKLVQ 89
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 543 DNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSSIKELP 598
DNN ++PND F +L++SR ++ S P G+ L L+ S ++K+LP
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLP 240
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 522 QNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKL 581
N I+++ + P L +L+L NN+ I + L L+L ++ + ++ L
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGL 175
Query: 582 VSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNF 629
LQ L LS + I +L R L L NL L L ++E + P SN
Sbjct: 176 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL-FSQECLNKPINHQSNL 221
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 522 QNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKL 581
N I+++ + P L +L+L NN+ I + L L+L ++ + ++ L
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGL 177
Query: 582 VSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNF 629
LQ L LS + I +L R L L NL L L ++E + P SN
Sbjct: 178 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL-FSQECLNKPINHQSNL 223
>pdb|3P03|A Chain A, Crystal Structure Of Betp-G153d With Choline Bound
pdb|3P03|B Chain B, Crystal Structure Of Betp-G153d With Choline Bound
pdb|3P03|C Chain C, Crystal Structure Of Betp-G153d With Choline Bound
Length = 566
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 119 VAKTLSDVATSLGEGAFEVVAERVLASVAVEKPTDPTVVGLESTL 163
+ T+ A SLG GA ++ A A++ +E P+D T+VG+ S L
Sbjct: 214 IIATVFGTACSLGLGALQIGAGLSAANI-IEDPSDWTIVGIVSVL 257
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 535 PHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQL 587
P L L++ N+ + +P+ M L VL +SR +LKS P GI +L SLQ++
Sbjct: 451 PQLKELYISRNKLMTLPDASLLPM--LLVLKISRNQLKSVPDGIFDRLTSLQKI 502
>pdb|4DOJ|A Chain A, Crystal Structure Of Betp In Outward-Facing Conformation
pdb|4DOJ|B Chain B, Crystal Structure Of Betp In Outward-Facing Conformation
pdb|4DOJ|C Chain C, Crystal Structure Of Betp In Outward-Facing Conformation
Length = 566
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 119 VAKTLSDVATSLGEGAFEVVAERVLASVAVEKPTDPTVVGLESTL 163
+ T+ A SLG GA ++ A A++ +E P+D T+VG+ S L
Sbjct: 214 IIATVFGTACSLGLGALQIGAGLSAANI-IEDPSDWTIVGIVSVL 257
>pdb|4AIN|A Chain A, Crystal Structure Of Betp With Asymmetric Protomers.
pdb|4AIN|B Chain B, Crystal Structure Of Betp With Asymmetric Protomers.
pdb|4AIN|C Chain C, Crystal Structure Of Betp With Asymmetric Protomers
Length = 539
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 119 VAKTLSDVATSLGEGAFEVVAERVLASVAVEKPTDPTVVGLESTL 163
+ T+ A SLG GA ++ A A++ +E P+D T+VG+ S L
Sbjct: 203 IIATVFGTACSLGLGALQIGAGLSAANI-IEDPSDWTIVGIVSVL 246
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 509 VREWENVRRLSLMQNEIT-----NLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKV 563
+ EN+R L L ++I NL ++ HL +L L NE L + + F+ L++
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 564 LNL--SRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELY-ALVNLKCLNLE 613
L+L +R+K+K L L+ L+LS+S + +L+ L L+ LNL+
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 584 LQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTV 641
LQ+LDL+ + + ELP L L LK L L A + + Q SNF L L + G
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSIKGNT 336
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 543 DNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSSIKELP 598
DNN ++PND F +L++SR ++ S P G+ L L+ S ++K+LP
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLP 240
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 502 GLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSL 561
G+T ++ N+ L L N+IT+L + + L L N + + S+
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSA--IAGLQSI 115
Query: 562 KVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPR--ELYALVNLKCLNLEHAEELI 619
K L+L+ ++ ++ L L L + Y + ++ L L NL+ L++ + +
Sbjct: 116 KTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVND 171
Query: 620 TIPQQVISNFSRLHVLR 636
P ++N S+L LR
Sbjct: 172 LTP---LANLSKLTTLR 185
>pdb|2WIT|A Chain A, Crystal Structure Of The Sodium-coupled Glycine Betaine
Symporter Betp From Corynebacterium Glutamicum With
Bound Substrate
pdb|2WIT|B Chain B, Crystal Structure Of The Sodium-coupled Glycine Betaine
Symporter Betp From Corynebacterium Glutamicum With
Bound Substrate
pdb|2WIT|C Chain C, Crystal Structure Of The Sodium-coupled Glycine Betaine
Symporter Betp From Corynebacterium Glutamicum With
Bound Substrate
Length = 566
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 119 VAKTLSDVATSLGEGAFEVVAERVLASVAVEKPTDPTVVGLESTL 163
+ T+ A SLG GA ++ A A++ +E P+D T+VG+ S L
Sbjct: 214 IIATVFGTACSLGLGALQIGAGLSAANI-IEDPSDWTIVGIVSVL 257
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 517 RLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS- 573
+L L +N++T ++ H+ L L N+ +I N F +H LK LNL ++
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 574 FPLGISKLVSLQQLDLS 590
P L SL L+L+
Sbjct: 118 MPGSFEHLNSLTSLNLA 134
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 581 LVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGT 640
LV+LQ L L ++ I+ LP + L NLK L + ++ P I + +L L + G
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGC 239
Query: 641 VSL 643
+L
Sbjct: 240 TAL 242
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 522 QNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKL 581
N I+++ + P L +L+L NN+ I + L L+L ++ + ++ L
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGL 195
Query: 582 VSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEEL 618
LQ L LS + I +L R L L NL L L E L
Sbjct: 196 TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 231
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPND 553
L+ + + +A R ++ L L +N I ++ L TL L +N IP+
Sbjct: 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141
Query: 554 FFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSSIKELPRE--LYALVNLKCL 610
F+Y+ L+ L L ++S P +++ SL +LDL E E L NLK L
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201
Query: 611 NL 612
NL
Sbjct: 202 NL 203
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 30/131 (22%)
Query: 508 DVRE-WENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNL 566
DV E + + + +L+ E++N K HL + L NN + N F M L L L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYK------HLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85
Query: 567 SRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVI 626
S +L+ P PR L +L+ L+L H ++ +P+
Sbjct: 86 SYNRLRCIP----------------------PRTFDGLKSLRLLSL-HGNDISVVPEGAF 122
Query: 627 SNFSRLHVLRM 637
++ S L L +
Sbjct: 123 NDLSALSHLAI 133
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 522 QNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKL 581
N I+++ + P L +L+L NN+ I + L L+L ++ + ++ L
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGL 195
Query: 582 VSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEEL 618
LQ L LS + I +L R L L NL L L E L
Sbjct: 196 TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 231
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 522 QNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKL 581
N I+++ + P L +L+L NN+ I + L L+L ++ + ++ L
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGL 195
Query: 582 VSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEEL 618
LQ L LS + I +L R L L NL L L E L
Sbjct: 196 TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,570,542
Number of Sequences: 62578
Number of extensions: 1048632
Number of successful extensions: 2568
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2418
Number of HSP's gapped (non-prelim): 188
length of query: 911
length of database: 14,973,337
effective HSP length: 108
effective length of query: 803
effective length of database: 8,214,913
effective search space: 6596575139
effective search space used: 6596575139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)