Query 042327
Match_columns 911
No_of_seqs 654 out of 4733
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9E-100 2E-104 890.0 50.0 844 12-888 6-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 3E-63 6.5E-68 616.9 50.8 651 154-855 184-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-44 2.3E-49 387.7 14.3 281 159-442 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.9 2.3E-25 5E-30 235.7 -2.6 370 493-900 34-424 (1255)
5 PLN00113 leucine-rich repeat r 99.9 1E-21 2.2E-26 246.2 16.7 330 511-870 116-460 (968)
6 PLN00113 leucine-rich repeat r 99.9 5.7E-21 1.2E-25 239.4 18.4 335 510-872 137-485 (968)
7 KOG4194 Membrane glycoprotein 99.9 2.6E-22 5.5E-27 211.8 5.1 334 501-875 112-461 (873)
8 KOG4194 Membrane glycoprotein 99.9 6.4E-23 1.4E-27 216.3 0.4 325 510-877 99-431 (873)
9 PLN03210 Resistant to P. syrin 99.8 3.6E-20 7.9E-25 231.7 16.9 317 513-870 532-904 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 1.3E-21 2.8E-26 207.6 -3.7 326 508-869 27-369 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 2.2E-19 4.7E-24 182.0 -3.4 323 506-849 199-540 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 2.5E-19 5.3E-24 181.6 -9.4 213 509-730 87-307 (565)
13 KOG0618 Serine/threonine phosp 99.6 4.2E-17 9.1E-22 182.3 -3.5 319 509-849 64-488 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 5.9E-15 1.3E-19 171.2 13.9 131 493-641 203-333 (788)
15 KOG0617 Ras suppressor protein 99.5 1.3E-16 2.8E-21 143.3 -4.6 162 505-685 25-189 (264)
16 KOG4658 Apoptotic ATPase [Sign 99.5 7E-15 1.5E-19 174.5 7.0 322 496-857 528-867 (889)
17 KOG0618 Serine/threonine phosp 99.5 2.2E-15 4.7E-20 168.8 0.0 279 534-855 44-327 (1081)
18 PRK15387 E3 ubiquitin-protein 99.5 1.6E-13 3.5E-18 159.4 12.8 255 514-849 202-457 (788)
19 PRK15370 E3 ubiquitin-protein 99.5 2E-13 4.3E-18 159.8 12.0 116 513-640 199-314 (754)
20 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.5E-18 161.8 9.3 219 514-787 179-398 (754)
21 KOG4237 Extracellular matrix p 99.4 2.7E-15 5.8E-20 152.6 -5.0 300 494-824 49-357 (498)
22 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.6E-19 130.8 -4.1 134 506-642 49-185 (264)
23 KOG4237 Extracellular matrix p 99.3 3.4E-14 7.3E-19 144.6 -3.8 272 535-848 67-357 (498)
24 PRK00411 cdc6 cell division co 99.2 1.2E-09 2.7E-14 122.3 25.2 294 153-466 29-357 (394)
25 PRK04841 transcriptional regul 99.2 6.7E-10 1.4E-14 139.0 23.8 291 153-486 13-332 (903)
26 TIGR03015 pepcterm_ATPase puta 99.2 5.7E-09 1.2E-13 110.3 23.0 182 173-362 41-242 (269)
27 PF01637 Arch_ATPase: Archaeal 99.1 3.2E-10 7E-15 117.3 12.9 197 156-357 1-233 (234)
28 PF14580 LRR_9: Leucine-rich r 99.1 4.8E-11 1E-15 113.8 5.6 107 508-616 14-124 (175)
29 TIGR02928 orc1/cdc6 family rep 99.1 2.3E-08 5E-13 110.8 28.0 296 153-466 14-349 (365)
30 cd00116 LRR_RI Leucine-rich re 99.1 3.2E-11 6.9E-16 131.4 3.9 83 533-615 21-118 (319)
31 cd00116 LRR_RI Leucine-rich re 99.1 5.7E-11 1.2E-15 129.4 5.8 239 511-790 21-291 (319)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 111.4 5.1 141 521-677 5-148 (175)
33 KOG4341 F-box protein containi 99.0 1.1E-11 2.3E-16 127.8 -3.8 83 536-618 139-229 (483)
34 TIGR00635 ruvB Holliday juncti 99.0 3.8E-09 8.2E-14 113.8 14.7 264 155-467 5-289 (305)
35 PRK00080 ruvB Holliday junctio 99.0 6.2E-09 1.4E-13 112.7 14.7 272 154-467 25-310 (328)
36 PF05729 NACHT: NACHT domain 98.9 8E-09 1.7E-13 100.4 11.5 143 176-326 1-163 (166)
37 KOG0532 Leucine-rich repeat (L 98.8 1.6E-10 3.4E-15 123.6 -3.9 166 515-704 77-243 (722)
38 KOG4341 F-box protein containi 98.8 1.5E-10 3.3E-15 119.5 -4.0 284 514-854 139-443 (483)
39 PRK06893 DNA replication initi 98.8 2.7E-08 5.9E-13 101.4 11.1 154 174-360 38-205 (229)
40 KOG0532 Leucine-rich repeat (L 98.8 7.2E-10 1.6E-14 118.7 -1.5 175 510-705 95-270 (722)
41 KOG3207 Beta-tubulin folding c 98.8 1.6E-09 3.5E-14 112.7 0.9 209 532-787 118-336 (505)
42 COG2909 MalT ATP-dependent tra 98.7 2.6E-07 5.6E-12 104.9 16.6 288 156-484 21-336 (894)
43 KOG3207 Beta-tubulin folding c 98.7 2.3E-09 5E-14 111.5 -0.4 160 511-685 119-287 (505)
44 KOG1259 Nischarin, modulator o 98.7 7.9E-09 1.7E-13 102.0 1.7 109 559-687 284-392 (490)
45 COG4886 Leucine-rich repeat (L 98.6 1.5E-08 3.2E-13 113.7 4.0 107 531-640 112-219 (394)
46 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.6E-07 5.6E-12 94.8 12.5 169 159-360 22-203 (226)
47 KOG2120 SCF ubiquitin ligase, 98.6 3E-09 6.4E-14 105.1 -2.5 81 560-640 186-270 (419)
48 PTZ00112 origin recognition co 98.6 6.3E-07 1.4E-11 102.5 15.3 208 153-362 754-986 (1164)
49 PF13855 LRR_8: Leucine rich r 98.6 4.2E-08 9.2E-13 76.7 3.8 60 535-594 1-61 (61)
50 PRK13342 recombination factor 98.6 6E-07 1.3E-11 100.3 13.9 175 154-359 12-197 (413)
51 KOG2120 SCF ubiquitin ligase, 98.6 4.9E-09 1.1E-13 103.5 -2.7 135 696-849 235-375 (419)
52 COG3899 Predicted ATPase [Gene 98.6 7.2E-07 1.6E-11 107.4 14.9 307 156-484 2-384 (849)
53 PF13173 AAA_14: AAA domain 98.5 1.8E-07 3.8E-12 86.0 7.4 120 175-318 2-127 (128)
54 KOG1259 Nischarin, modulator o 98.5 1.2E-08 2.5E-13 100.8 -0.5 131 509-643 280-412 (490)
55 PRK04195 replication factor C 98.5 4E-06 8.7E-11 95.7 19.4 180 154-362 14-206 (482)
56 COG4886 Leucine-rich repeat (L 98.5 7.8E-08 1.7E-12 107.9 4.1 157 509-684 112-270 (394)
57 PRK08727 hypothetical protein; 98.5 1.7E-06 3.6E-11 88.5 13.5 166 157-355 23-201 (233)
58 TIGR02903 spore_lon_C ATP-depe 98.5 3.2E-05 7E-10 90.2 25.1 202 154-361 154-398 (615)
59 COG2256 MGS1 ATPase related to 98.5 2.3E-06 5E-11 89.3 13.5 167 154-355 30-209 (436)
60 cd01128 rho_factor Transcripti 98.4 3.5E-07 7.6E-12 93.3 7.1 92 174-267 15-113 (249)
61 PRK05564 DNA polymerase III su 98.4 5.4E-06 1.2E-10 89.2 16.4 177 155-358 5-190 (313)
62 PRK07003 DNA polymerase III su 98.4 6.1E-06 1.3E-10 94.3 16.8 194 154-359 16-222 (830)
63 COG1474 CDC6 Cdc6-related prot 98.4 1.1E-05 2.5E-10 87.2 18.2 201 154-358 17-238 (366)
64 cd00009 AAA The AAA+ (ATPases 98.4 2.2E-06 4.7E-11 81.3 10.8 124 157-297 1-131 (151)
65 PLN03150 hypothetical protein; 98.4 7.5E-07 1.6E-11 104.7 8.8 105 536-641 419-526 (623)
66 PRK12402 replication factor C 98.4 5.7E-06 1.2E-10 90.7 14.9 193 154-356 15-224 (337)
67 KOG1909 Ran GTPase-activating 98.3 1.4E-07 2.9E-12 96.1 0.6 36 752-788 239-281 (382)
68 PRK14949 DNA polymerase III su 98.3 8.2E-06 1.8E-10 95.2 14.9 180 154-358 16-220 (944)
69 PF13401 AAA_22: AAA domain; P 98.3 1.2E-06 2.5E-11 81.2 6.6 117 174-295 3-125 (131)
70 PRK09087 hypothetical protein; 98.3 6.8E-06 1.5E-10 83.2 12.6 143 174-358 43-195 (226)
71 PRK08084 DNA replication initi 98.3 5.3E-06 1.1E-10 84.9 11.9 173 154-359 23-210 (235)
72 PRK00440 rfc replication facto 98.3 1.5E-05 3.2E-10 86.6 16.2 178 154-355 17-200 (319)
73 PRK05642 DNA replication initi 98.3 7.1E-06 1.5E-10 83.9 12.4 153 175-360 45-210 (234)
74 PRK14961 DNA polymerase III su 98.3 2E-05 4.2E-10 86.5 16.7 190 154-356 16-218 (363)
75 KOG1909 Ran GTPase-activating 98.3 2.3E-07 4.9E-12 94.5 1.2 165 510-686 27-230 (382)
76 PRK12323 DNA polymerase III su 98.3 1.1E-05 2.4E-10 91.1 14.3 194 154-358 16-225 (700)
77 PRK14960 DNA polymerase III su 98.3 1.4E-05 3E-10 90.5 15.2 192 154-357 15-218 (702)
78 PLN03025 replication factor C 98.3 1E-05 2.2E-10 87.3 13.8 180 154-355 13-197 (319)
79 KOG1859 Leucine-rich repeat pr 98.3 3.2E-08 7E-13 109.0 -5.5 102 536-642 165-266 (1096)
80 PF13855 LRR_8: Leucine rich r 98.3 6.5E-07 1.4E-11 70.0 3.0 59 513-571 1-61 (61)
81 KOG2028 ATPase related to the 98.3 1.5E-05 3.3E-10 81.4 13.5 162 166-353 153-331 (554)
82 KOG0531 Protein phosphatase 1, 98.2 7.6E-08 1.6E-12 108.0 -3.6 124 513-641 72-197 (414)
83 PLN03150 hypothetical protein; 98.2 2.3E-06 4.9E-11 100.6 8.5 109 514-622 419-532 (623)
84 PRK14963 DNA polymerase III su 98.2 2.6E-05 5.6E-10 88.3 16.5 196 154-360 14-220 (504)
85 PF05496 RuvB_N: Holliday junc 98.2 1.6E-05 3.5E-10 77.7 12.0 175 154-362 24-225 (233)
86 PRK09376 rho transcription ter 98.2 2.9E-06 6.3E-11 90.0 7.4 99 165-267 158-266 (416)
87 PF13191 AAA_16: AAA ATPase do 98.2 2.9E-06 6.3E-11 84.0 7.0 44 156-199 2-48 (185)
88 KOG2982 Uncharacterized conser 98.2 9E-07 2E-11 87.9 2.9 34 752-785 247-287 (418)
89 PRK14957 DNA polymerase III su 98.2 2.9E-05 6.3E-10 88.0 15.3 182 154-359 16-222 (546)
90 PRK06645 DNA polymerase III su 98.2 4.2E-05 9E-10 86.2 16.2 192 155-355 22-226 (507)
91 PTZ00202 tuzin; Provisional 98.2 2E-05 4.4E-10 83.9 12.6 163 153-326 261-434 (550)
92 PRK13341 recombination factor 98.2 2E-05 4.3E-10 92.7 14.0 168 155-353 29-212 (725)
93 PRK14956 DNA polymerase III su 98.2 1.9E-05 4.1E-10 87.0 12.8 190 154-355 18-219 (484)
94 PRK14962 DNA polymerase III su 98.1 4.8E-05 1E-09 85.4 15.8 185 154-361 14-222 (472)
95 PRK07940 DNA polymerase III su 98.1 5.8E-05 1.3E-09 82.6 15.9 187 154-359 5-214 (394)
96 PF00308 Bac_DnaA: Bacterial d 98.1 2.1E-05 4.5E-10 79.4 10.9 162 175-358 34-208 (219)
97 PRK07994 DNA polymerase III su 98.1 2.9E-05 6.3E-10 89.3 13.4 193 154-358 16-220 (647)
98 PRK08691 DNA polymerase III su 98.1 3.9E-05 8.6E-10 87.8 13.8 191 154-358 16-220 (709)
99 PF12799 LRR_4: Leucine Rich r 98.1 4.3E-06 9.3E-11 59.7 3.9 39 560-598 2-40 (44)
100 TIGR02397 dnaX_nterm DNA polym 98.1 0.00013 2.9E-09 80.5 17.7 181 154-358 14-218 (355)
101 TIGR01242 26Sp45 26S proteasom 98.1 2.6E-05 5.6E-10 85.9 11.6 171 154-352 122-328 (364)
102 PRK08903 DnaA regulatory inact 98.1 2.6E-05 5.5E-10 79.9 10.8 170 156-362 21-203 (227)
103 PRK07471 DNA polymerase III su 98.0 9.2E-06 2E-10 88.1 7.8 197 154-359 19-239 (365)
104 TIGR00767 rho transcription te 98.0 1.7E-05 3.6E-10 84.9 9.4 93 173-267 166-265 (415)
105 PRK09112 DNA polymerase III su 98.0 4.5E-05 9.7E-10 82.4 12.9 197 154-359 23-241 (351)
106 PRK14951 DNA polymerase III su 98.0 8.9E-05 1.9E-09 85.3 15.7 196 154-358 16-225 (618)
107 PRK14958 DNA polymerase III su 98.0 7.4E-05 1.6E-09 84.9 14.7 180 154-357 16-219 (509)
108 PRK14964 DNA polymerase III su 98.0 0.00011 2.3E-09 82.2 15.6 179 154-355 13-214 (491)
109 PRK05896 DNA polymerase III su 98.0 4.6E-05 9.9E-10 86.4 12.7 195 154-360 16-223 (605)
110 TIGR00678 holB DNA polymerase 98.0 0.00016 3.4E-09 71.6 15.3 159 165-353 3-186 (188)
111 PRK14955 DNA polymerase III su 98.0 7.1E-05 1.5E-09 83.1 14.0 196 154-355 16-225 (397)
112 PRK14087 dnaA chromosomal repl 97.9 4.9E-05 1.1E-09 85.2 11.3 167 175-359 141-320 (450)
113 KOG0531 Protein phosphatase 1, 97.9 1.3E-06 2.7E-11 98.2 -1.3 126 509-640 91-218 (414)
114 KOG1859 Leucine-rich repeat pr 97.9 2.8E-07 6.1E-12 101.8 -6.4 126 512-642 163-291 (1096)
115 PRK14970 DNA polymerase III su 97.9 0.00021 4.5E-09 79.0 15.8 183 154-359 17-211 (367)
116 PRK09111 DNA polymerase III su 97.9 0.00015 3.3E-09 83.6 15.1 195 154-358 24-233 (598)
117 PRK14952 DNA polymerase III su 97.9 0.00018 3.9E-09 82.5 15.5 197 154-362 13-224 (584)
118 KOG2227 Pre-initiation complex 97.9 0.00052 1.1E-08 73.4 17.6 205 153-362 149-376 (529)
119 PRK14969 DNA polymerase III su 97.9 0.00015 3.2E-09 83.0 14.8 182 154-358 16-221 (527)
120 PRK07764 DNA polymerase III su 97.9 0.00019 4.1E-09 85.7 15.7 189 154-355 15-218 (824)
121 KOG1644 U2-associated snRNP A' 97.9 2.2E-05 4.7E-10 74.2 6.1 101 514-614 43-149 (233)
122 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 57.1 3.7 41 582-623 1-41 (44)
123 KOG4579 Leucine-rich repeat (L 97.9 1.6E-06 3.5E-11 76.2 -1.3 109 515-624 29-141 (177)
124 PRK14954 DNA polymerase III su 97.9 0.00026 5.6E-09 81.8 16.1 200 154-358 16-229 (620)
125 PRK11331 5-methylcytosine-spec 97.9 6.6E-05 1.4E-09 81.8 10.5 68 155-225 176-243 (459)
126 TIGR02880 cbbX_cfxQ probable R 97.9 0.00028 6.1E-09 74.3 15.1 154 155-328 23-210 (284)
127 PRK14959 DNA polymerase III su 97.9 0.0002 4.3E-09 81.8 14.7 196 154-362 16-225 (624)
128 KOG2982 Uncharacterized conser 97.9 2.4E-06 5.2E-11 84.9 -0.9 105 536-640 46-156 (418)
129 TIGR02881 spore_V_K stage V sp 97.8 0.00016 3.4E-09 75.6 12.5 155 155-329 7-194 (261)
130 CHL00181 cbbX CbbX; Provisiona 97.8 0.00031 6.8E-09 73.9 14.5 155 155-329 24-212 (287)
131 COG2255 RuvB Holliday junction 97.8 0.00095 2.1E-08 66.8 16.6 173 154-360 26-225 (332)
132 KOG2543 Origin recognition com 97.8 0.00013 2.8E-09 75.8 11.0 167 153-325 5-192 (438)
133 PRK07133 DNA polymerase III su 97.8 0.0004 8.6E-09 80.7 15.4 192 154-358 18-220 (725)
134 PRK14971 DNA polymerase III su 97.8 0.00047 1E-08 80.2 16.3 178 154-355 17-219 (614)
135 KOG0989 Replication factor C, 97.8 0.00019 4.1E-09 72.5 11.0 188 154-359 36-232 (346)
136 TIGR00362 DnaA chromosomal rep 97.8 0.00036 7.7E-09 78.2 14.7 160 175-356 136-308 (405)
137 PRK03992 proteasome-activating 97.8 0.00026 5.7E-09 78.2 13.4 170 154-351 131-336 (389)
138 PRK14950 DNA polymerase III su 97.8 0.00026 5.6E-09 82.7 13.5 193 154-358 16-221 (585)
139 PRK06620 hypothetical protein; 97.8 9.8E-05 2.1E-09 74.1 8.8 136 176-356 45-187 (214)
140 PRK06305 DNA polymerase III su 97.8 0.0005 1.1E-08 77.3 15.2 181 154-358 17-223 (451)
141 PRK14088 dnaA chromosomal repl 97.7 0.00019 4.1E-09 80.5 11.8 179 155-355 107-302 (440)
142 PRK08451 DNA polymerase III su 97.7 0.00072 1.6E-08 76.4 16.2 193 154-358 14-218 (535)
143 PRK14953 DNA polymerase III su 97.7 0.00089 1.9E-08 75.7 16.9 181 154-358 16-220 (486)
144 PRK12422 chromosomal replicati 97.7 0.00051 1.1E-08 76.8 14.5 153 175-351 141-306 (445)
145 TIGR03345 VI_ClpV1 type VI sec 97.7 0.0004 8.7E-09 84.1 14.6 155 154-326 187-363 (852)
146 COG0466 Lon ATP-dependent Lon 97.7 0.0033 7.2E-08 71.1 20.3 159 153-326 322-508 (782)
147 PRK15386 type III secretion pr 97.7 7.8E-05 1.7E-09 80.3 7.4 80 511-601 50-134 (426)
148 PF14516 AAA_35: AAA-like doma 97.7 0.0024 5.1E-08 69.1 18.8 199 153-364 10-245 (331)
149 PTZ00361 26 proteosome regulat 97.7 0.00031 6.7E-09 77.7 12.0 171 154-351 183-388 (438)
150 PRK14948 DNA polymerase III su 97.7 0.0011 2.4E-08 77.2 17.0 194 154-358 16-222 (620)
151 PRK00149 dnaA chromosomal repl 97.7 0.00029 6.3E-09 79.9 12.1 160 175-356 148-320 (450)
152 TIGR02639 ClpA ATP-dependent C 97.7 0.00025 5.4E-09 85.3 11.8 155 155-326 183-358 (731)
153 KOG3665 ZYG-1-like serine/thre 97.7 2.9E-05 6.4E-10 90.9 3.7 126 513-640 122-260 (699)
154 PF05621 TniB: Bacterial TniB 97.6 0.0012 2.7E-08 67.9 14.8 201 155-358 35-261 (302)
155 TIGR00763 lon ATP-dependent pr 97.6 0.0044 9.6E-08 75.1 22.2 46 154-199 320-371 (775)
156 PF05673 DUF815: Protein of un 97.6 0.0032 6.9E-08 62.8 17.0 46 154-199 27-76 (249)
157 PTZ00454 26S protease regulato 97.6 0.00057 1.2E-08 75.2 12.6 171 154-351 145-350 (398)
158 KOG3665 ZYG-1-like serine/thre 97.6 4.4E-05 9.6E-10 89.5 4.2 125 511-637 146-282 (699)
159 PRK06647 DNA polymerase III su 97.6 0.0017 3.7E-08 74.7 16.3 192 154-357 16-219 (563)
160 PHA02544 44 clamp loader, smal 97.5 0.00047 1E-08 74.7 11.0 145 154-324 21-171 (316)
161 CHL00095 clpC Clp protease ATP 97.5 0.00046 9.9E-09 84.1 11.4 154 155-325 180-353 (821)
162 PRK14965 DNA polymerase III su 97.5 0.0013 2.8E-08 76.4 14.4 193 154-359 16-222 (576)
163 KOG4579 Leucine-rich repeat (L 97.5 1E-05 2.2E-10 71.3 -2.2 89 513-602 53-143 (177)
164 PRK14086 dnaA chromosomal repl 97.5 0.0011 2.4E-08 75.6 13.2 158 176-355 315-485 (617)
165 PRK15386 type III secretion pr 97.5 0.0002 4.4E-09 77.2 6.9 70 695-786 52-121 (426)
166 COG1373 Predicted ATPase (AAA+ 97.5 0.0017 3.7E-08 71.8 14.4 136 159-323 22-164 (398)
167 KOG1644 U2-associated snRNP A' 97.5 0.00014 3.1E-09 68.8 4.6 58 537-596 44-102 (233)
168 COG0593 DnaA ATPase involved i 97.4 0.0018 3.9E-08 70.1 13.6 264 174-488 112-392 (408)
169 PRK05563 DNA polymerase III su 97.4 0.0036 7.8E-08 72.4 16.8 190 154-356 16-218 (559)
170 KOG1947 Leucine rich repeat pr 97.4 3.8E-05 8.3E-10 88.9 0.7 109 533-641 186-306 (482)
171 TIGR03689 pup_AAA proteasome A 97.4 0.0011 2.3E-08 74.6 11.7 162 154-328 182-380 (512)
172 TIGR01241 FtsH_fam ATP-depende 97.4 0.0024 5.1E-08 73.5 14.5 171 154-351 55-259 (495)
173 PRK10865 protein disaggregatio 97.4 0.0011 2.4E-08 80.6 12.4 154 155-326 179-354 (857)
174 PRK11034 clpA ATP-dependent Cl 97.4 0.00075 1.6E-08 80.1 10.6 155 155-326 187-362 (758)
175 PRK08118 topology modulation p 97.4 0.00011 2.5E-09 70.6 3.1 35 176-211 2-37 (167)
176 COG3903 Predicted ATPase [Gene 97.4 0.00022 4.8E-09 75.4 5.4 290 174-486 13-314 (414)
177 PRK10787 DNA-binding ATP-depen 97.3 0.0058 1.3E-07 73.3 17.6 47 153-199 321-373 (784)
178 PRK08116 hypothetical protein; 97.3 0.00031 6.7E-09 73.2 5.8 102 176-295 115-220 (268)
179 PRK07399 DNA polymerase III su 97.3 0.0077 1.7E-07 64.2 16.5 194 155-358 5-221 (314)
180 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0017 3.6E-08 79.5 12.5 154 155-326 174-349 (852)
181 PF04665 Pox_A32: Poxvirus A32 97.2 0.00082 1.8E-08 67.6 7.4 36 176-214 14-49 (241)
182 KOG2123 Uncharacterized conser 97.2 2.4E-05 5.2E-10 77.3 -3.4 101 534-637 18-124 (388)
183 PRK05707 DNA polymerase III su 97.2 0.0069 1.5E-07 65.0 14.7 95 256-358 105-203 (328)
184 COG1222 RPT1 ATP-dependent 26S 97.2 0.0031 6.8E-08 65.4 11.2 195 155-377 152-391 (406)
185 smart00382 AAA ATPases associa 97.2 0.0012 2.6E-08 61.7 7.5 88 176-270 3-91 (148)
186 PRK07261 topology modulation p 97.1 0.001 2.2E-08 64.4 6.9 65 177-267 2-67 (171)
187 CHL00176 ftsH cell division pr 97.1 0.0046 1E-07 72.1 12.9 170 154-350 183-386 (638)
188 KOG2739 Leucine-rich acidic nu 97.1 0.00024 5.3E-09 70.4 2.1 80 534-615 42-126 (260)
189 PRK12377 putative replication 97.1 0.0011 2.4E-08 67.7 7.0 74 174-267 100-173 (248)
190 PF00004 AAA: ATPase family as 97.1 0.00085 1.8E-08 62.0 5.7 22 178-199 1-22 (132)
191 PRK12608 transcription termina 97.1 0.0032 6.9E-08 67.3 10.5 103 163-267 120-230 (380)
192 COG3267 ExeA Type II secretory 97.1 0.028 6E-07 56.0 16.1 182 173-360 49-247 (269)
193 PRK10536 hypothetical protein; 97.0 0.0037 8E-08 63.2 10.0 54 156-212 57-110 (262)
194 TIGR00602 rad24 checkpoint pro 97.0 0.0026 5.6E-08 73.6 9.7 46 154-199 84-134 (637)
195 KOG2004 Mitochondrial ATP-depe 97.0 0.015 3.2E-07 65.7 14.7 65 153-223 410-480 (906)
196 PRK06835 DNA replication prote 97.0 0.019 4.2E-07 61.4 15.3 38 175-215 183-220 (329)
197 KOG0741 AAA+-type ATPase [Post 96.9 0.009 1.9E-07 64.9 12.2 145 174-348 537-704 (744)
198 PRK08769 DNA polymerase III su 96.9 0.028 6E-07 59.8 16.0 181 160-359 10-209 (319)
199 PRK06871 DNA polymerase III su 96.9 0.035 7.6E-07 59.1 16.5 175 162-356 10-201 (325)
200 PRK08058 DNA polymerase III su 96.9 0.02 4.3E-07 61.9 15.0 161 155-324 6-180 (329)
201 PF10443 RNA12: RNA12 protein; 96.9 0.02 4.4E-07 61.8 14.6 200 159-370 1-290 (431)
202 COG5238 RNA1 Ran GTPase-activa 96.9 0.00028 6E-09 69.7 0.6 43 601-643 88-133 (388)
203 KOG1514 Origin recognition com 96.9 0.03 6.6E-07 63.4 16.2 199 154-359 396-622 (767)
204 TIGR01243 CDC48 AAA family ATP 96.9 0.0064 1.4E-07 73.6 11.9 172 155-353 179-382 (733)
205 KOG2739 Leucine-rich acidic nu 96.8 0.00059 1.3E-08 67.7 2.2 104 511-615 41-153 (260)
206 COG2812 DnaX DNA polymerase II 96.8 0.0046 9.9E-08 69.1 9.3 187 154-353 16-215 (515)
207 KOG0733 Nuclear AAA ATPase (VC 96.8 0.021 4.5E-07 63.4 13.5 91 155-268 191-293 (802)
208 KOG1947 Leucine rich repeat pr 96.7 0.00024 5.1E-09 82.3 -1.6 61 581-641 187-254 (482)
209 PRK08181 transposase; Validate 96.7 0.0019 4.1E-08 66.9 5.1 77 168-267 101-177 (269)
210 TIGR02640 gas_vesic_GvpN gas v 96.7 0.027 5.9E-07 58.8 13.8 56 161-224 9-64 (262)
211 PF13177 DNA_pol3_delta2: DNA 96.7 0.016 3.5E-07 55.4 11.1 137 158-314 1-162 (162)
212 PRK06921 hypothetical protein; 96.7 0.0014 2.9E-08 68.3 3.9 39 174-214 116-154 (266)
213 PF13207 AAA_17: AAA domain; P 96.6 0.0016 3.4E-08 59.2 3.3 23 177-199 1-23 (121)
214 PRK10865 protein disaggregatio 96.6 0.43 9.3E-06 58.6 25.0 46 154-199 568-622 (857)
215 COG1223 Predicted ATPase (AAA+ 96.6 0.031 6.8E-07 55.3 11.8 170 154-351 121-318 (368)
216 TIGR01243 CDC48 AAA family ATP 96.6 0.027 5.9E-07 68.2 14.3 171 154-352 453-657 (733)
217 TIGR02639 ClpA ATP-dependent C 96.6 0.012 2.7E-07 70.9 11.3 46 154-199 454-508 (731)
218 COG0542 clpA ATP-binding subun 96.6 0.046 1E-06 64.0 15.3 104 154-268 491-604 (786)
219 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0027 5.8E-08 67.6 4.9 45 155-199 52-102 (361)
220 KOG0991 Replication factor C, 96.5 0.0063 1.4E-07 59.0 6.7 46 154-199 27-72 (333)
221 PF02562 PhoH: PhoH-like prote 96.5 0.0039 8.4E-08 61.3 5.4 51 160-213 6-56 (205)
222 PRK06090 DNA polymerase III su 96.5 0.094 2E-06 55.8 16.1 177 161-359 10-202 (319)
223 PRK08939 primosomal protein Dn 96.5 0.0058 1.3E-07 64.9 7.0 116 158-294 135-259 (306)
224 CHL00195 ycf46 Ycf46; Provisio 96.5 0.026 5.6E-07 63.8 12.5 171 154-352 228-429 (489)
225 COG2607 Predicted ATPase (AAA+ 96.5 0.016 3.5E-07 56.8 9.2 46 154-199 60-109 (287)
226 KOG2123 Uncharacterized conser 96.5 0.00015 3.2E-09 71.9 -4.7 98 512-611 18-123 (388)
227 PF00448 SRP54: SRP54-type pro 96.5 0.006 1.3E-07 60.2 6.5 88 176-266 2-92 (196)
228 PRK04296 thymidine kinase; Pro 96.4 0.0029 6.3E-08 62.4 4.2 113 176-297 3-117 (190)
229 KOG2228 Origin recognition com 96.4 0.025 5.4E-07 58.4 10.6 170 154-326 24-219 (408)
230 PRK12727 flagellar biosynthesi 96.4 0.09 1.9E-06 59.0 15.8 87 175-266 350-437 (559)
231 PF13306 LRR_5: Leucine rich r 96.4 0.011 2.4E-07 54.1 7.7 116 511-632 10-128 (129)
232 PRK09361 radB DNA repair and r 96.4 0.013 2.8E-07 59.9 8.7 46 174-223 22-67 (225)
233 PRK09183 transposase/IS protei 96.4 0.005 1.1E-07 63.9 5.7 25 175-199 102-126 (259)
234 KOG0730 AAA+-type ATPase [Post 96.4 0.041 9E-07 61.9 12.8 166 154-342 434-631 (693)
235 cd01133 F1-ATPase_beta F1 ATP 96.4 0.01 2.2E-07 61.0 7.6 90 174-266 68-172 (274)
236 PRK07993 DNA polymerase III su 96.3 0.099 2.1E-06 56.4 15.4 178 162-358 10-204 (334)
237 PRK06526 transposase; Provisio 96.3 0.0036 7.8E-08 64.5 4.2 25 175-199 98-122 (254)
238 PF07693 KAP_NTPase: KAP famil 96.3 0.12 2.5E-06 56.2 16.2 40 160-199 2-44 (325)
239 TIGR02237 recomb_radB DNA repa 96.3 0.012 2.6E-07 59.3 7.6 48 174-225 11-58 (209)
240 cd01393 recA_like RecA is a b 96.2 0.04 8.8E-07 56.3 11.1 90 174-267 18-124 (226)
241 KOG0744 AAA+-type ATPase [Post 96.2 0.015 3.2E-07 59.4 7.3 80 175-267 177-260 (423)
242 COG1484 DnaC DNA replication p 96.1 0.024 5.1E-07 58.6 9.1 74 174-267 104-177 (254)
243 PRK06696 uridine kinase; Valid 96.1 0.0083 1.8E-07 61.0 5.7 42 158-199 2-46 (223)
244 PRK07952 DNA replication prote 96.1 0.026 5.7E-07 57.6 9.2 87 163-268 85-173 (244)
245 PRK04132 replication factor C 96.1 0.078 1.7E-06 63.5 14.3 153 183-358 574-731 (846)
246 cd00983 recA RecA is a bacter 96.1 0.013 2.9E-07 62.0 7.0 86 174-267 54-143 (325)
247 KOG1969 DNA replication checkp 96.1 0.014 3E-07 66.1 7.4 73 174-269 325-399 (877)
248 PRK15455 PrkA family serine pr 96.1 0.0067 1.5E-07 67.9 5.0 45 155-199 77-127 (644)
249 KOG0733 Nuclear AAA ATPase (VC 96.1 0.064 1.4E-06 59.7 12.2 154 174-352 544-718 (802)
250 COG0572 Udk Uridine kinase [Nu 96.1 0.015 3.3E-07 57.1 6.8 79 174-258 7-85 (218)
251 PRK05541 adenylylsulfate kinas 96.1 0.012 2.6E-07 57.5 6.3 36 174-212 6-41 (176)
252 PRK06964 DNA polymerase III su 96.1 0.24 5.3E-06 53.3 16.5 92 256-359 131-226 (342)
253 PF08423 Rad51: Rad51; InterP 96.0 0.027 5.9E-07 58.3 9.0 92 174-266 37-142 (256)
254 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.024 5.1E-07 53.4 7.7 117 176-297 3-139 (159)
255 PRK06762 hypothetical protein; 96.0 0.066 1.4E-06 51.6 11.2 24 176-199 3-26 (166)
256 cd01394 radB RadB. The archaea 96.0 0.046 9.9E-07 55.5 10.4 43 174-219 18-60 (218)
257 TIGR03346 chaperone_ClpB ATP-d 96.0 0.024 5.1E-07 69.6 9.6 46 154-199 565-619 (852)
258 cd01120 RecA-like_NTPases RecA 96.0 0.034 7.4E-07 53.3 9.0 40 177-219 1-40 (165)
259 COG1102 Cmk Cytidylate kinase 96.0 0.01 2.2E-07 54.5 4.6 45 177-235 2-46 (179)
260 PRK10733 hflB ATP-dependent me 96.0 0.082 1.8E-06 62.6 13.7 152 155-329 153-338 (644)
261 TIGR02012 tigrfam_recA protein 96.0 0.02 4.2E-07 60.7 7.6 86 174-267 54-143 (321)
262 PF00485 PRK: Phosphoribulokin 96.0 0.055 1.2E-06 53.7 10.5 82 177-261 1-87 (194)
263 cd03238 ABC_UvrA The excision 96.0 0.019 4.2E-07 55.5 7.0 125 174-310 20-161 (176)
264 TIGR03345 VI_ClpV1 type VI sec 95.9 0.013 2.8E-07 71.3 7.0 46 154-199 566-620 (852)
265 PF13306 LRR_5: Leucine rich r 95.9 0.02 4.4E-07 52.4 6.7 104 530-639 7-112 (129)
266 COG1875 NYN ribonuclease and A 95.9 0.03 6.6E-07 58.4 8.3 53 158-210 228-280 (436)
267 cd01131 PilT Pilus retraction 95.9 0.0078 1.7E-07 59.9 4.1 108 176-299 2-112 (198)
268 PF12061 DUF3542: Protein of u 95.9 0.011 2.5E-07 59.6 5.0 75 11-92 298-372 (402)
269 KOG0728 26S proteasome regulat 95.8 0.16 3.4E-06 50.0 12.4 166 156-345 148-350 (404)
270 TIGR02238 recomb_DMC1 meiotic 95.8 0.05 1.1E-06 57.9 10.1 91 174-266 95-200 (313)
271 CHL00095 clpC Clp protease ATP 95.8 0.023 5E-07 69.4 8.5 46 154-199 509-563 (821)
272 COG0470 HolB ATPase involved i 95.8 0.05 1.1E-06 59.1 10.4 138 156-312 3-167 (325)
273 KOG0735 AAA+-type ATPase [Post 95.8 0.022 4.7E-07 64.3 7.2 73 174-267 430-504 (952)
274 PRK06547 hypothetical protein; 95.8 0.014 3E-07 56.3 5.1 35 165-199 5-39 (172)
275 PRK09354 recA recombinase A; P 95.7 0.028 6E-07 60.1 7.6 86 174-267 59-148 (349)
276 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.03 6.6E-07 57.6 7.7 92 174-267 18-125 (235)
277 KOG0652 26S proteasome regulat 95.7 0.16 3.5E-06 50.3 11.8 54 146-199 161-229 (424)
278 PRK00771 signal recognition pa 95.6 0.081 1.7E-06 58.9 11.1 89 174-266 94-184 (437)
279 TIGR03499 FlhF flagellar biosy 95.6 0.049 1.1E-06 57.4 9.0 88 174-266 193-281 (282)
280 KOG0736 Peroxisome assembly fa 95.6 0.13 2.7E-06 59.1 12.3 92 154-268 672-775 (953)
281 cd00544 CobU Adenosylcobinamid 95.6 0.017 3.8E-07 55.4 5.0 80 178-266 2-82 (169)
282 PLN03187 meiotic recombination 95.6 0.062 1.4E-06 57.7 9.6 92 174-266 125-230 (344)
283 COG1618 Predicted nucleotide k 95.6 0.014 3.1E-07 53.6 3.9 24 176-199 6-29 (179)
284 KOG0734 AAA+-type ATPase conta 95.5 0.025 5.5E-07 61.6 6.4 45 155-199 305-361 (752)
285 PLN00020 ribulose bisphosphate 95.5 0.028 6E-07 59.6 6.6 27 173-199 146-172 (413)
286 PTZ00301 uridine kinase; Provi 95.5 0.023 5E-07 56.7 5.8 25 175-199 3-27 (210)
287 cd03247 ABCC_cytochrome_bd The 95.5 0.043 9.3E-07 53.6 7.7 127 174-310 27-169 (178)
288 PF00560 LRR_1: Leucine Rich R 95.5 0.0053 1.2E-07 36.3 0.7 17 584-600 2-18 (22)
289 cd03115 SRP The signal recogni 95.5 0.036 7.8E-07 53.9 7.1 23 177-199 2-24 (173)
290 COG4608 AppF ABC-type oligopep 95.5 0.059 1.3E-06 54.6 8.5 127 174-304 38-178 (268)
291 PF14532 Sigma54_activ_2: Sigm 95.5 0.0097 2.1E-07 55.4 2.9 43 157-199 1-45 (138)
292 PHA00729 NTP-binding motif con 95.5 0.018 3.9E-07 57.3 4.9 35 165-199 7-41 (226)
293 COG1136 SalX ABC-type antimicr 95.5 0.058 1.3E-06 53.7 8.2 127 174-302 30-209 (226)
294 PF00560 LRR_1: Leucine Rich R 95.5 0.0067 1.4E-07 35.9 1.0 21 560-580 1-21 (22)
295 TIGR02239 recomb_RAD51 DNA rep 95.5 0.077 1.7E-06 56.8 9.8 60 174-234 95-157 (316)
296 PF13238 AAA_18: AAA domain; P 95.4 0.011 2.5E-07 54.1 3.1 22 178-199 1-22 (129)
297 PRK04301 radA DNA repair and r 95.4 0.1 2.2E-06 56.3 10.8 58 174-233 101-162 (317)
298 PRK07667 uridine kinase; Provi 95.4 0.021 4.6E-07 56.5 5.0 36 164-199 4-41 (193)
299 cd03222 ABC_RNaseL_inhibitor T 95.4 0.037 8E-07 53.6 6.5 27 173-199 23-49 (177)
300 PRK14722 flhF flagellar biosyn 95.4 0.056 1.2E-06 58.6 8.5 88 174-266 136-224 (374)
301 cd03214 ABC_Iron-Siderophores_ 95.4 0.046 1E-06 53.5 7.3 121 174-299 24-161 (180)
302 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.087 1.9E-06 54.1 9.6 48 174-226 20-67 (237)
303 cd01121 Sms Sms (bacterial rad 95.4 0.058 1.2E-06 58.9 8.6 85 174-267 81-168 (372)
304 COG0542 clpA ATP-binding subun 95.4 0.14 3.1E-06 60.1 12.1 155 156-326 172-346 (786)
305 COG2884 FtsE Predicted ATPase 95.4 0.095 2.1E-06 49.8 8.7 124 174-302 27-203 (223)
306 PRK06067 flagellar accessory p 95.3 0.086 1.9E-06 54.1 9.5 88 174-267 24-130 (234)
307 cd02019 NK Nucleoside/nucleoti 95.3 0.015 3.1E-07 46.5 2.8 23 177-199 1-23 (69)
308 cd03246 ABCC_Protease_Secretio 95.3 0.031 6.8E-07 54.3 5.7 26 174-199 27-52 (173)
309 PRK08233 hypothetical protein; 95.2 0.016 3.5E-07 56.9 3.7 25 175-199 3-27 (182)
310 TIGR00959 ffh signal recogniti 95.2 0.07 1.5E-06 59.2 8.8 91 174-266 98-191 (428)
311 PRK10867 signal recognition pa 95.2 0.07 1.5E-06 59.2 8.8 26 174-199 99-124 (433)
312 cd03216 ABC_Carb_Monos_I This 95.2 0.022 4.7E-07 54.7 4.3 116 174-299 25-145 (163)
313 COG0396 sufC Cysteine desulfur 95.2 0.068 1.5E-06 52.4 7.5 67 244-310 149-218 (251)
314 cd03223 ABCD_peroxisomal_ALDP 95.2 0.048 1E-06 52.5 6.6 117 174-300 26-152 (166)
315 KOG0731 AAA+-type ATPase conta 95.1 0.33 7.1E-06 56.7 14.1 176 154-356 311-522 (774)
316 cd03228 ABCC_MRP_Like The MRP 95.1 0.069 1.5E-06 51.7 7.6 126 174-310 27-167 (171)
317 PRK11034 clpA ATP-dependent Cl 95.1 0.077 1.7E-06 63.4 9.1 46 154-199 458-512 (758)
318 PRK11889 flhF flagellar biosyn 95.0 0.1 2.2E-06 56.3 8.9 88 174-266 240-329 (436)
319 PF13671 AAA_33: AAA domain; P 95.0 0.019 4.2E-07 53.7 3.4 23 177-199 1-23 (143)
320 cd03230 ABC_DR_subfamily_A Thi 95.0 0.049 1.1E-06 52.9 6.3 120 174-300 25-159 (173)
321 TIGR00390 hslU ATP-dependent p 95.0 0.064 1.4E-06 58.3 7.6 46 154-199 12-71 (441)
322 PRK05480 uridine/cytidine kina 95.0 0.021 4.6E-07 57.5 3.8 27 173-199 4-30 (209)
323 PF01695 IstB_IS21: IstB-like 95.0 0.03 6.6E-07 54.4 4.7 38 174-214 46-83 (178)
324 PRK14974 cell division protein 95.0 0.17 3.6E-06 54.4 10.7 90 174-267 139-232 (336)
325 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.056 1.2E-06 54.7 6.6 123 174-299 29-202 (254)
326 PRK08699 DNA polymerase III su 95.0 0.27 5.8E-06 52.8 12.3 68 257-325 113-184 (325)
327 PLN03186 DNA repair protein RA 95.0 0.17 3.7E-06 54.5 10.7 59 174-234 122-184 (342)
328 PF00154 RecA: recA bacterial 95.0 0.08 1.7E-06 56.0 8.0 87 174-268 52-142 (322)
329 TIGR00554 panK_bact pantothena 95.0 0.15 3.2E-06 53.5 9.9 27 173-199 60-86 (290)
330 COG5238 RNA1 Ran GTPase-activa 95.0 0.089 1.9E-06 52.6 7.6 163 512-685 29-230 (388)
331 PRK12678 transcription termina 94.9 0.048 1E-06 61.1 6.3 99 166-266 406-512 (672)
332 PRK13531 regulatory ATPase Rav 94.9 0.038 8.2E-07 61.3 5.6 44 154-199 20-63 (498)
333 PRK09270 nucleoside triphospha 94.9 0.033 7.1E-07 57.0 4.9 27 173-199 31-57 (229)
334 COG0464 SpoVK ATPases of the A 94.9 0.27 5.9E-06 56.8 13.0 152 155-329 243-426 (494)
335 COG0468 RecA RecA/RadA recombi 94.9 0.11 2.5E-06 53.7 8.7 88 174-266 59-150 (279)
336 KOG2035 Replication factor C, 94.9 1.2 2.7E-05 45.0 15.3 208 156-381 15-261 (351)
337 PF10236 DAP3: Mitochondrial r 94.9 0.59 1.3E-05 49.9 14.4 49 307-355 258-306 (309)
338 COG0563 Adk Adenylate kinase a 94.9 0.041 8.9E-07 53.3 5.2 23 177-199 2-24 (178)
339 PRK06002 fliI flagellum-specif 94.9 0.091 2E-06 58.1 8.3 88 174-266 164-263 (450)
340 TIGR00235 udk uridine kinase. 94.9 0.024 5.1E-07 57.0 3.6 26 174-199 5-30 (207)
341 PRK10463 hydrogenase nickel in 94.9 0.1 2.2E-06 54.3 8.2 34 166-199 95-128 (290)
342 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.071 1.5E-06 49.9 6.6 104 174-300 25-131 (144)
343 TIGR00064 ftsY signal recognit 94.8 0.12 2.7E-06 53.9 9.0 89 174-266 71-163 (272)
344 TIGR01360 aden_kin_iso1 adenyl 94.8 0.024 5.1E-07 56.1 3.5 26 174-199 2-27 (188)
345 KOG2170 ATPase of the AAA+ sup 94.8 0.064 1.4E-06 54.6 6.4 100 155-269 83-190 (344)
346 PRK04328 hypothetical protein; 94.8 0.11 2.4E-06 53.6 8.6 41 174-217 22-62 (249)
347 PRK12726 flagellar biosynthesi 94.8 0.26 5.7E-06 53.0 11.3 88 174-266 205-294 (407)
348 PF07728 AAA_5: AAA domain (dy 94.8 0.059 1.3E-06 50.1 6.0 42 178-225 2-43 (139)
349 TIGR01650 PD_CobS cobaltochela 94.8 1.1 2.4E-05 47.5 15.9 38 160-199 51-88 (327)
350 PRK03839 putative kinase; Prov 94.8 0.023 5.1E-07 55.6 3.3 23 177-199 2-24 (180)
351 cd01135 V_A-ATPase_B V/A-type 94.8 0.12 2.5E-06 53.3 8.3 94 174-267 68-176 (276)
352 COG1428 Deoxynucleoside kinase 94.8 0.025 5.5E-07 54.8 3.3 25 175-199 4-28 (216)
353 cd02025 PanK Pantothenate kina 94.8 0.12 2.7E-06 52.1 8.5 23 177-199 1-23 (220)
354 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.2 4.4E-06 51.2 10.3 41 174-217 19-59 (229)
355 PF00006 ATP-synt_ab: ATP synt 94.7 0.15 3.2E-06 51.0 8.8 94 166-266 5-114 (215)
356 TIGR02236 recomb_radA DNA repa 94.7 0.21 4.6E-06 53.7 10.8 58 174-233 94-155 (310)
357 PRK08972 fliI flagellum-specif 94.7 0.069 1.5E-06 58.7 6.8 88 174-266 161-261 (444)
358 PRK12723 flagellar biosynthesi 94.6 0.16 3.5E-06 55.6 9.6 89 174-266 173-263 (388)
359 KOG0743 AAA+-type ATPase [Post 94.6 3.1 6.7E-05 45.5 18.8 24 176-199 236-259 (457)
360 PTZ00035 Rad51 protein; Provis 94.6 0.32 6.8E-06 52.6 11.7 91 174-266 117-222 (337)
361 PRK13765 ATP-dependent proteas 94.6 0.065 1.4E-06 62.5 6.8 74 154-232 31-104 (637)
362 PTZ00088 adenylate kinase 1; P 94.6 0.035 7.5E-07 56.3 4.1 22 178-199 9-30 (229)
363 PF07726 AAA_3: ATPase family 94.6 0.025 5.4E-07 50.5 2.6 28 178-208 2-29 (131)
364 PRK12597 F0F1 ATP synthase sub 94.6 0.097 2.1E-06 58.3 7.7 91 174-266 142-246 (461)
365 COG3640 CooC CO dehydrogenase 94.5 0.057 1.2E-06 53.1 5.1 50 177-235 2-51 (255)
366 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.05 1.1E-06 51.9 4.8 119 174-301 24-145 (157)
367 PF06309 Torsin: Torsin; Inte 94.5 0.064 1.4E-06 47.8 5.0 45 155-199 26-77 (127)
368 TIGR00708 cobA cob(I)alamin ad 94.5 0.12 2.6E-06 49.3 7.2 117 175-297 5-141 (173)
369 PRK12724 flagellar biosynthesi 94.5 0.12 2.6E-06 56.4 8.0 25 175-199 223-247 (432)
370 PRK00625 shikimate kinase; Pro 94.5 0.029 6.4E-07 54.1 3.1 23 177-199 2-24 (173)
371 TIGR00150 HI0065_YjeE ATPase, 94.5 0.065 1.4E-06 48.7 5.1 26 174-199 21-46 (133)
372 KOG3864 Uncharacterized conser 94.4 0.0067 1.4E-07 57.9 -1.4 67 752-829 123-192 (221)
373 cd01129 PulE-GspE PulE/GspE Th 94.4 0.069 1.5E-06 55.6 5.9 104 157-273 62-165 (264)
374 COG4088 Predicted nucleotide k 94.4 0.028 6E-07 53.8 2.6 24 176-199 2-25 (261)
375 PRK04040 adenylate kinase; Pro 94.4 0.034 7.4E-07 54.6 3.4 24 176-199 3-26 (188)
376 PRK08149 ATP synthase SpaL; Va 94.4 0.16 3.6E-06 56.0 8.9 88 174-266 150-250 (428)
377 TIGR01425 SRP54_euk signal rec 94.4 0.13 2.9E-06 56.7 8.2 26 174-199 99-124 (429)
378 PRK05922 type III secretion sy 94.4 0.12 2.6E-06 57.0 7.8 88 174-266 156-256 (434)
379 TIGR02858 spore_III_AA stage I 94.4 0.25 5.3E-06 51.4 9.7 125 163-299 98-232 (270)
380 PRK13543 cytochrome c biogenes 94.3 0.16 3.4E-06 51.4 8.2 26 174-199 36-61 (214)
381 cd02028 UMPK_like Uridine mono 94.3 0.078 1.7E-06 51.7 5.8 23 177-199 1-23 (179)
382 cd01136 ATPase_flagellum-secre 94.3 0.2 4.3E-06 53.3 9.1 88 174-266 68-168 (326)
383 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.093 2E-06 52.3 6.4 25 174-198 25-49 (200)
384 PF00625 Guanylate_kin: Guanyl 94.3 0.063 1.4E-06 52.7 5.1 37 175-214 2-38 (183)
385 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.03 6.5E-07 55.0 2.8 23 177-199 1-23 (183)
386 PRK08533 flagellar accessory p 94.3 0.24 5.2E-06 50.5 9.3 53 174-232 23-75 (230)
387 cd02027 APSK Adenosine 5'-phos 94.2 0.11 2.4E-06 48.9 6.4 23 177-199 1-23 (149)
388 COG1703 ArgK Putative periplas 94.2 0.075 1.6E-06 54.3 5.4 59 164-223 38-98 (323)
389 cd02024 NRK1 Nicotinamide ribo 94.2 0.032 7E-07 54.4 2.8 23 177-199 1-23 (187)
390 PRK05986 cob(I)alamin adenolsy 94.2 0.15 3.4E-06 49.3 7.3 119 174-296 21-158 (191)
391 PF13481 AAA_25: AAA domain; P 94.2 0.14 3E-06 50.8 7.4 43 175-217 32-81 (193)
392 PRK05439 pantothenate kinase; 94.2 0.31 6.6E-06 51.6 10.1 27 173-199 84-110 (311)
393 PF03308 ArgK: ArgK protein; 94.2 0.085 1.9E-06 53.2 5.7 57 162-219 14-72 (266)
394 KOG0729 26S proteasome regulat 94.2 0.096 2.1E-06 51.9 5.8 45 155-199 178-235 (435)
395 PRK08927 fliI flagellum-specif 94.2 0.18 3.8E-06 55.8 8.6 88 174-266 157-257 (442)
396 PRK14721 flhF flagellar biosyn 94.1 0.25 5.4E-06 54.6 9.7 60 175-235 191-251 (420)
397 PF12775 AAA_7: P-loop contain 94.1 0.074 1.6E-06 55.5 5.4 88 164-267 23-110 (272)
398 cd01124 KaiC KaiC is a circadi 94.1 0.14 3.1E-06 50.3 7.3 38 177-217 1-38 (187)
399 PF03205 MobB: Molybdopterin g 94.1 0.044 9.4E-07 50.8 3.3 39 176-216 1-39 (140)
400 COG1419 FlhF Flagellar GTP-bin 94.1 0.37 7.9E-06 52.0 10.5 86 163-251 187-277 (407)
401 PF00910 RNA_helicase: RNA hel 94.1 0.035 7.5E-07 48.9 2.5 22 178-199 1-22 (107)
402 cd02023 UMPK Uridine monophosp 94.1 0.034 7.5E-07 55.4 2.8 23 177-199 1-23 (198)
403 KOG0739 AAA+-type ATPase [Post 94.1 0.2 4.3E-06 50.8 7.9 90 154-267 133-235 (439)
404 PRK06217 hypothetical protein; 94.1 0.04 8.6E-07 54.1 3.1 23 177-199 3-25 (183)
405 cd01132 F1_ATPase_alpha F1 ATP 94.0 0.19 4.1E-06 51.8 7.9 89 174-267 68-171 (274)
406 TIGR03498 FliI_clade3 flagella 94.0 0.11 2.4E-06 57.3 6.8 89 174-266 139-239 (418)
407 PF01583 APS_kinase: Adenylyls 94.0 0.061 1.3E-06 50.4 4.0 35 176-213 3-37 (156)
408 PRK05201 hslU ATP-dependent pr 94.0 0.15 3.2E-06 55.6 7.4 46 154-199 15-74 (443)
409 COG1066 Sms Predicted ATP-depe 94.0 0.32 6.9E-06 52.1 9.6 95 163-267 79-178 (456)
410 PRK09280 F0F1 ATP synthase sub 94.0 0.15 3.3E-06 56.6 7.7 91 174-266 143-247 (463)
411 PRK00131 aroK shikimate kinase 94.0 0.049 1.1E-06 53.0 3.6 25 175-199 4-28 (175)
412 PRK11823 DNA repair protein Ra 94.0 0.17 3.7E-06 57.0 8.2 85 174-267 79-166 (446)
413 TIGR00764 lon_rel lon-related 93.9 0.17 3.6E-06 59.4 8.4 74 154-232 18-91 (608)
414 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.28 6.1E-06 51.0 9.3 40 174-216 35-74 (259)
415 PF13245 AAA_19: Part of AAA d 93.9 0.14 3.1E-06 41.6 5.5 25 174-198 9-33 (76)
416 TIGR02030 BchI-ChlI magnesium 93.9 0.085 1.8E-06 56.7 5.5 45 155-199 5-49 (337)
417 PRK10751 molybdopterin-guanine 93.9 0.055 1.2E-06 51.8 3.6 26 174-199 5-30 (173)
418 PRK07132 DNA polymerase III su 93.8 2.1 4.6E-05 45.3 15.6 168 163-358 5-185 (299)
419 PRK05973 replicative DNA helic 93.8 0.32 7E-06 49.3 9.1 49 174-227 63-111 (237)
420 PTZ00185 ATPase alpha subunit; 93.8 0.3 6.4E-06 54.4 9.4 92 174-267 188-299 (574)
421 PRK15453 phosphoribulokinase; 93.8 0.37 8.1E-06 49.7 9.6 80 174-256 4-89 (290)
422 cd02020 CMPK Cytidine monophos 93.8 0.043 9.4E-07 51.6 2.8 23 177-199 1-23 (147)
423 TIGR02322 phosphon_PhnN phosph 93.8 0.051 1.1E-06 53.2 3.4 24 176-199 2-25 (179)
424 cd02029 PRK_like Phosphoribulo 93.8 0.23 4.9E-06 50.7 7.9 79 177-258 1-85 (277)
425 COG0465 HflB ATP-dependent Zn 93.8 0.44 9.5E-06 54.5 11.0 46 154-199 150-207 (596)
426 TIGR03575 selen_PSTK_euk L-ser 93.8 0.28 6.1E-06 52.5 9.1 22 178-199 2-23 (340)
427 CHL00081 chlI Mg-protoporyphyr 93.8 0.085 1.9E-06 56.7 5.1 46 154-199 17-62 (350)
428 COG0541 Ffh Signal recognition 93.7 2.7 5.8E-05 45.8 16.1 58 174-235 99-158 (451)
429 cd03281 ABC_MSH5_euk MutS5 hom 93.7 0.045 9.7E-07 55.0 2.8 23 175-197 29-51 (213)
430 PRK05703 flhF flagellar biosyn 93.7 0.19 4.1E-06 56.1 7.9 87 175-266 221-308 (424)
431 PRK13949 shikimate kinase; Pro 93.7 0.052 1.1E-06 52.3 3.1 23 177-199 3-25 (169)
432 cd00227 CPT Chloramphenicol (C 93.7 0.059 1.3E-06 52.5 3.5 24 176-199 3-26 (175)
433 TIGR02902 spore_lonB ATP-depen 93.7 0.11 2.5E-06 59.9 6.4 45 155-199 66-110 (531)
434 PF08433 KTI12: Chromatin asso 93.7 0.12 2.6E-06 53.8 5.9 24 176-199 2-25 (270)
435 PF13504 LRR_7: Leucine rich r 93.7 0.048 1E-06 29.9 1.6 15 583-597 2-16 (17)
436 KOG1532 GTPase XAB1, interacts 93.6 0.069 1.5E-06 53.3 3.8 61 174-235 18-87 (366)
437 cd00071 GMPK Guanosine monopho 93.6 0.058 1.3E-06 50.0 3.2 23 177-199 1-23 (137)
438 PRK00889 adenylylsulfate kinas 93.6 0.067 1.4E-06 52.1 3.8 26 174-199 3-28 (175)
439 PRK13947 shikimate kinase; Pro 93.6 0.058 1.3E-06 52.3 3.3 23 177-199 3-25 (171)
440 PRK06851 hypothetical protein; 93.6 0.51 1.1E-05 51.1 10.6 56 156-217 199-254 (367)
441 TIGR01039 atpD ATP synthase, F 93.6 0.22 4.8E-06 55.2 8.0 91 174-266 142-246 (461)
442 PRK09519 recA DNA recombinatio 93.6 0.21 4.6E-06 59.1 8.4 86 174-267 59-148 (790)
443 KOG0651 26S proteasome regulat 93.5 0.12 2.5E-06 53.0 5.2 26 174-199 165-190 (388)
444 TIGR03305 alt_F1F0_F1_bet alte 93.5 0.17 3.6E-06 56.1 7.0 91 174-266 137-241 (449)
445 PF08477 Miro: Miro-like prote 93.5 0.061 1.3E-06 48.4 3.2 22 178-199 2-23 (119)
446 PF00158 Sigma54_activat: Sigm 93.5 0.098 2.1E-06 50.3 4.6 44 156-199 1-46 (168)
447 PRK14530 adenylate kinase; Pro 93.5 0.058 1.3E-06 54.5 3.3 24 176-199 4-27 (215)
448 PRK09099 type III secretion sy 93.5 0.25 5.4E-06 54.9 8.3 90 173-266 161-262 (441)
449 COG1124 DppF ABC-type dipeptid 93.5 0.093 2E-06 52.1 4.4 26 174-199 32-57 (252)
450 cd03213 ABCG_EPDR ABCG transpo 93.5 0.18 4E-06 49.9 6.7 26 174-199 34-59 (194)
451 PF05970 PIF1: PIF1-like helic 93.5 0.16 3.5E-06 55.8 6.9 38 162-199 9-46 (364)
452 KOG3347 Predicted nucleotide k 93.5 0.11 2.4E-06 47.1 4.4 25 175-199 7-31 (176)
453 cd02021 GntK Gluconate kinase 93.4 0.055 1.2E-06 51.1 2.8 23 177-199 1-23 (150)
454 PF13504 LRR_7: Leucine rich r 93.4 0.053 1.1E-06 29.7 1.5 17 837-854 1-17 (17)
455 PRK13407 bchI magnesium chelat 93.4 0.098 2.1E-06 56.1 4.9 46 154-199 8-53 (334)
456 TIGR00073 hypB hydrogenase acc 93.4 0.081 1.8E-06 53.1 4.1 31 169-199 16-46 (207)
457 PF06745 KaiC: KaiC; InterPro 93.4 0.081 1.8E-06 54.0 4.1 87 174-266 18-124 (226)
458 COG1224 TIP49 DNA helicase TIP 93.4 0.16 3.5E-06 52.9 6.1 53 153-206 38-95 (450)
459 COG1936 Predicted nucleotide k 93.4 0.062 1.3E-06 50.3 2.8 20 177-196 2-21 (180)
460 TIGR03263 guanyl_kin guanylate 93.4 0.063 1.4E-06 52.6 3.1 24 176-199 2-25 (180)
461 TIGR01040 V-ATPase_V1_B V-type 93.3 0.29 6.2E-06 54.1 8.3 92 174-266 140-256 (466)
462 PRK06936 type III secretion sy 93.3 0.26 5.6E-06 54.5 8.0 88 174-266 161-261 (439)
463 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.11 2.5E-06 54.9 5.0 46 154-199 61-112 (358)
464 TIGR00416 sms DNA repair prote 93.3 0.33 7.1E-06 54.8 9.0 95 164-267 81-180 (454)
465 PRK07594 type III secretion sy 93.2 0.28 6.2E-06 54.2 8.2 90 173-267 153-255 (433)
466 cd00464 SK Shikimate kinase (S 93.2 0.069 1.5E-06 50.7 3.0 22 178-199 2-23 (154)
467 PRK06793 fliI flagellum-specif 93.2 0.34 7.4E-06 53.6 8.7 90 174-267 155-256 (432)
468 KOG0473 Leucine-rich repeat pr 93.1 0.003 6.4E-08 61.2 -6.3 84 532-616 39-122 (326)
469 PRK13975 thymidylate kinase; P 93.1 0.078 1.7E-06 52.8 3.4 24 176-199 3-26 (196)
470 PRK05057 aroK shikimate kinase 93.1 0.083 1.8E-06 51.1 3.5 25 175-199 4-28 (172)
471 COG0003 ArsA Predicted ATPase 93.1 0.13 2.9E-06 54.5 5.3 48 175-225 2-49 (322)
472 PRK06995 flhF flagellar biosyn 93.1 0.34 7.4E-06 54.4 8.6 59 175-234 256-315 (484)
473 COG1126 GlnQ ABC-type polar am 93.1 0.076 1.7E-06 51.6 3.0 36 174-213 27-62 (240)
474 PRK05688 fliI flagellum-specif 93.1 0.3 6.6E-06 54.1 8.1 88 174-266 167-267 (451)
475 cd01672 TMPK Thymidine monopho 93.0 0.18 3.8E-06 50.3 5.9 23 177-199 2-24 (200)
476 TIGR01420 pilT_fam pilus retra 93.0 0.11 2.3E-06 56.7 4.5 108 174-297 121-231 (343)
477 TIGR01069 mutS2 MutS2 family p 93.0 0.044 9.5E-07 65.9 1.6 187 174-380 321-522 (771)
478 KOG0735 AAA+-type ATPase [Post 93.0 2.8 6.1E-05 48.2 15.3 171 155-352 668-870 (952)
479 PRK10875 recD exonuclease V su 93.0 0.23 5E-06 57.9 7.4 55 175-229 167-221 (615)
480 TIGR02655 circ_KaiC circadian 93.0 0.46 1E-05 54.4 9.8 97 164-266 250-362 (484)
481 PRK10078 ribose 1,5-bisphospho 93.0 0.078 1.7E-06 52.2 3.1 24 176-199 3-26 (186)
482 COG2019 AdkA Archaeal adenylat 93.0 0.084 1.8E-06 48.9 3.0 47 175-234 4-50 (189)
483 COG0467 RAD55 RecA-superfamily 93.0 0.12 2.6E-06 54.0 4.7 54 173-232 21-74 (260)
484 PRK12339 2-phosphoglycerate ki 93.0 0.095 2.1E-06 51.8 3.7 25 175-199 3-27 (197)
485 PRK00300 gmk guanylate kinase; 93.0 0.087 1.9E-06 52.8 3.5 26 174-199 4-29 (205)
486 PRK05800 cobU adenosylcobinami 92.9 0.33 7.1E-06 46.8 7.2 82 177-266 3-85 (170)
487 cd00820 PEPCK_HprK Phosphoenol 92.9 0.091 2E-06 45.7 3.0 23 174-196 14-36 (107)
488 PRK14723 flhF flagellar biosyn 92.9 0.37 7.9E-06 57.0 8.9 86 175-266 185-272 (767)
489 PRK10416 signal recognition pa 92.9 0.5 1.1E-05 50.5 9.3 26 174-199 113-138 (318)
490 PRK07196 fliI flagellum-specif 92.9 0.34 7.3E-06 53.7 8.2 90 173-267 153-255 (434)
491 COG0714 MoxR-like ATPases [Gen 92.9 0.22 4.8E-06 54.0 6.8 62 155-224 25-86 (329)
492 COG3854 SpoIIIAA ncharacterize 92.9 0.45 9.8E-06 46.6 7.9 123 166-298 128-255 (308)
493 PF03266 NTPase_1: NTPase; In 92.9 0.082 1.8E-06 50.7 3.0 22 178-199 2-23 (168)
494 KOG0927 Predicted transporter 92.9 1.7 3.8E-05 48.3 13.2 247 8-298 279-568 (614)
495 TIGR01313 therm_gnt_kin carboh 92.9 0.07 1.5E-06 51.2 2.6 22 178-199 1-22 (163)
496 PRK03846 adenylylsulfate kinas 92.8 0.11 2.3E-06 51.8 3.8 27 173-199 22-48 (198)
497 TIGR01041 ATP_syn_B_arch ATP s 92.8 0.33 7.1E-06 54.2 7.9 92 174-266 140-247 (458)
498 cd01130 VirB11-like_ATPase Typ 92.7 0.076 1.6E-06 52.3 2.7 36 163-199 14-49 (186)
499 PF03193 DUF258: Protein of un 92.7 0.16 3.4E-06 47.9 4.6 36 161-199 24-59 (161)
500 PRK13948 shikimate kinase; Pro 92.7 0.1 2.3E-06 50.7 3.5 26 174-199 9-34 (182)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-100 Score=889.99 Aligned_cols=844 Identities=41% Similarity=0.669 Sum_probs=697.7
Q ss_pred hHHHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHh
Q 042327 12 DAIFSRCLDCTVTRAAYISELQANIDALRTERQRLIEARNDVLRKVAAAEQQRMRRLNKVQGWLSRVEAVEADADKLIRD 91 (911)
Q Consensus 12 ~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~Wl~~v~~~~~~~ed~ld~ 91 (911)
+..++++.+++.+++..+.++++++..+++++..|+.++.|+ ++++. ....+..|.+.+++++|+++|+++.
T Consensus 6 s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~-------~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 6 SFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDL-------DAKRD-DLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred EEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhhcc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667778888999999999999999999999999999994 44332 2356789999999999999999998
Q ss_pred Chhhhh----------------ccccCCCCCCCcccccchhHHHHHHHHHHHHHhcCCCcceehh-cccccccccCCCCC
Q 042327 92 SPQEIE----------------KLCLGGYCSKNFKSSYNFGKQVAKTLSDVATSLGEGAFEVVAE-RVLASVAVEKPTDP 154 (911)
Q Consensus 92 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 154 (911)
|..+.. +.|..++|.+.....+.+++++.+.+++++.+..++.|..++. ..+......+|..+
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCc
Confidence 764332 2244456666666778888999999999999888876766654 22333444455544
Q ss_pred cc-cchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 155 TV-VGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 155 ~~-vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
.. ||.+..++++++.|.+++..+++|+||||+||||||+.++|+...++.+||.++||+||+.++...++++|++.++.
T Consensus 158 ~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 158 ESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred cccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 44 99999999999999998889999999999999999999999994489999999999999999999999999999998
Q ss_pred CCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHhhh-ccccceEEecc
Q 042327 234 FDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGF-MEAHRKFKMVC 312 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~~-~~~~~~~~l~~ 312 (911)
....+.....++++..|.+.|++|||+||+||||+..+|+.++.++| ...+||||++|||++.||.. +++...++++.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP-SRENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC-CccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 77666666678999999999999999999999999999999999999 77889999999999999998 88888999999
Q ss_pred CCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHHHHHHHHHhhc-ccCCCCCCCc
Q 042327 313 LSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYAIQLLSSS-ASQFPGFGEG 391 (911)
Q Consensus 313 L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~ 391 (911)
|+++|||+||+++++......++.++++|++++++|+|+|||++++|+.|+.+++..+|+++.+.+.+. ..+.+++.+.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 999999999999999886666677999999999999999999999999999999999999999999887 5566677789
Q ss_pred ccchhhhccCCCCchhhhhHhhhhccCCCCcccCHHHHHHHHHhcCCccc-CccchhhhhHHHHHHHHHHhccccccC--
Q 042327 392 VYPLLKFSYDSLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGLLNE-SDRFGEQNQGYFILGILLHACLLEEGG-- 468 (911)
Q Consensus 392 v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~-~~~~~~~~~~~~~l~~L~~~~ll~~~~-- 468 (911)
++++|++|||+||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ ..+...++.|+.|+.+|+++++++...
T Consensus 397 i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 397 ILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 99999999999995 99999999999999999999999999999999999 567889999999999999999999863
Q ss_pred --CCeeecchhHHHHHHHHHhhcccc-ccEEEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCC
Q 042327 469 --DGEVKMHDVIRDMSLWIACDLKEK-ENFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNN 545 (911)
Q Consensus 469 --~~~~~mhdlv~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 545 (911)
..+|+|||+||++|.|+|++.++. +++++..+.+....|....+..+|++++.+|.+..++.-..+++|++|.+.+|
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRN 555 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeec
Confidence 479999999999999999977663 66777766666667888888999999999999998888888899999999999
Q ss_pred C--CCCcChhHHhcCCcccEEEccCC-CCcccCccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccC
Q 042327 546 E--SLKIPNDFFQYMHSLKVLNLSRI-KLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIP 622 (911)
Q Consensus 546 ~--~~~~~~~~~~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp 622 (911)
. +..++..+|..|+.|++|||++| .+..+|.+|++|.|||||+++++.|+.+|.++++|++|.+|++..+..+..+|
T Consensus 556 ~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 556 SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred chhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 6 88999999999999999999988 77899999999999999999999999999999999999999999997777665
Q ss_pred hhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEe
Q 042327 623 QQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFL 702 (911)
Q Consensus 623 ~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l 702 (911)
. ++..|++||+|.+..... ........++..+++|+.+.+...+...+..+.....+.+..+.+.+
T Consensus 636 ~-i~~~L~~Lr~L~l~~s~~-------------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 636 G-ILLELQSLRVLRLPRSAL-------------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred c-hhhhcccccEEEeecccc-------------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence 4 467799999999986421 11455777888899999988876665444445444455555555555
Q ss_pred cccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCc-cCcccEEEeecccccccccccccCCCccE
Q 042327 703 QSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCV-FHGLHTVHIEVCLTLKDLTFLVFAPNLKY 781 (911)
Q Consensus 703 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~~l~~l~~L~~ 781 (911)
.++.. ....+++..+.+|+.|.|.+|...+.. ..+... ..... |+++..+.+.+|....++.|....|+|+.
T Consensus 702 ~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~-~~~~~~----~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~ 774 (889)
T KOG4658|consen 702 EGCSK--RTLISSLGSLGNLEELSILDCGISEIV-IEWEES----LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTS 774 (889)
T ss_pred ccccc--ceeecccccccCcceEEEEcCCCchhh-cccccc----cchhhhHHHHHHHHhhccccccccchhhccCcccE
Confidence 44322 222356778899999999999865532 222210 00112 77899999999999999999989999999
Q ss_pred EEEecCcchhHHhccCCCCCcccccCCCCccccccee-ccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCC-
Q 042327 782 AEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYL-GLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNS- 859 (911)
Q Consensus 782 L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~- 859 (911)
|.+..|..++++++...... ........|+++..+ .+.+.+.+.++......+++|+.+.+..||+++.+|.....
T Consensus 775 l~l~~~~~~e~~i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~ 852 (889)
T KOG4658|consen 775 LSLVSCRLLEDIIPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLT 852 (889)
T ss_pred EEEecccccccCCCHHHHhh--hcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccc
Confidence 99999999998865322111 000023456666666 47777777777777777888999999999999999998655
Q ss_pred --CCCcceEEEccccccccceeCCccccccc
Q 042327 860 --AQEQTIVVHGDKTWWINLKWEDEATQDAF 888 (911)
Q Consensus 860 --~l~~L~~~~~~~~~~~~l~~~~~~~~~~~ 888 (911)
.........-+.+|-+.++|.++.....+
T Consensus 853 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 853 IVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eeccccceeecCCccceeeEEehhhhhhhhc
Confidence 22222333345567888999888776555
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3e-63 Score=616.93 Aligned_cols=651 Identities=20% Similarity=0.274 Sum_probs=406.1
Q ss_pred CcccchhhHHHHHHHHHc--CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEe---CCc-----------
Q 042327 154 PTVVGLESTLQKVWRCIV--EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVV---SKD----------- 217 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v---s~~----------- 217 (911)
+.+|||+..++++..+|. .+++++|+||||||+||||||+++|+.. ..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 458999999999998885 3578999999999999999999999987 678988888742 111
Q ss_pred cC-HHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCch
Q 042327 218 LR-VEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSE 296 (911)
Q Consensus 218 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~ 296 (911)
++ ...++++++.++....+ ..... ...+++.++++|+||||||||+...|+.+..... ..++||+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcH
Confidence 01 12344444444322111 01111 2456778999999999999999888888866554 567899999999999
Q ss_pred hHhhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHHHHHHH
Q 042327 297 EVCGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYAIQ 376 (911)
Q Consensus 297 ~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~ 376 (911)
.++..++..++|+++.+++++||+||+++|+... .+++.+.+++++|+++|+|+|||++++|+.|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9998877788999999999999999999998764 345578899999999999999999999999997 57899999999
Q ss_pred HHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhhHHHHHH
Q 042327 377 LLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQGYFILG 456 (911)
Q Consensus 377 ~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~ 456 (911)
.+.... ++.+..+|++||++|+++..|.||+++|+|+.+..++ .+..|++.+.... +..++
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~ 473 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLK 473 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChH
Confidence 887643 2479999999999998745899999999999887654 4777888765432 12288
Q ss_pred HHHHhccccccCCCeeecchhHHHHHHHHHhhccc---cccEEEEeC---------C-------------cccc----CC
Q 042327 457 ILLHACLLEEGGDGEVKMHDVIRDMSLWIACDLKE---KENFLVYAG---------V-------------GLTK----AP 507 (911)
Q Consensus 457 ~L~~~~ll~~~~~~~~~mhdlv~~~a~~~~~~~~~---~~~~~~~~~---------~-------------~~~~----~~ 507 (911)
.|+++||++.. ...+.|||++|+||+.+++.... +..+++... . ...+ ..
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 99999999885 46899999999999999876431 122222110 0 0000 01
Q ss_pred CccccccceEeeccccccc-------ccCC-CCCC-CCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccc
Q 042327 508 DVREWENVRRLSLMQNEIT-------NLKE-IPTC-PHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI 578 (911)
Q Consensus 508 ~~~~~~~l~~L~l~~~~~~-------~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i 578 (911)
.+.++.+++.|.+..+... .+|. +..+ ++||.|.+.++.+..+|..+ .+.+|+.|++++|.+..+|.++
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcccccccccc
Confidence 2455666776666543211 1111 2222 34666666666666665542 2456666666666666666555
Q ss_pred cCCCCCCEEeecCC-CCccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccc------cccc
Q 042327 579 SKLVSLQQLDLSYS-SIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLE------SLKD 651 (911)
Q Consensus 579 ~~l~~L~~L~L~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~------~~~~ 651 (911)
..+++|++|+|+++ .++.+| .+..+++|++|++++|..+..+|.. ++++++|+.|++++|.....+. .+..
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 56666666666554 344555 3555556666666665555555554 5556666666665553221100 0000
Q ss_pred ccccCCchhHHHhh-cCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCC------ccccCChhcccccce
Q 042327 652 SILFGGEEVLAEEL-LGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDST------SLDVSPLADLKHLYR 724 (911)
Q Consensus 652 ~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~------~~~~~~l~~l~~L~~ 724 (911)
..+.+.. ....+ ...++|+.|+++.+.+..++... ...++..|.+.++.... .+.......+++|+.
T Consensus 709 L~Lsgc~--~L~~~p~~~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 709 LNLSGCS--RLKSFPDISTNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred EeCCCCC--CccccccccCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccchhhhhccccchh
Confidence 0000000 00000 01234455555544433322110 01222223222211100 000000111234444
Q ss_pred EEEcccCCccceeeccccccccCCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccC-CC----
Q 042327 725 LRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAG-KF---- 799 (911)
Q Consensus 725 L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~-~~---- 799 (911)
|++++|+.+..++.. .. .+++|+.|+|++|..++.+|....+++|+.|+|++|..+..++... .+
T Consensus 783 L~Ls~n~~l~~lP~s-i~---------~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 783 LFLSDIPSLVELPSS-IQ---------NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred eeCCCCCCccccChh-hh---------CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeE
Confidence 555444443333221 11 3455555555555545444443344555555555554443332100 00
Q ss_pred ---CCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCC
Q 042327 800 ---ADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPL 855 (911)
Q Consensus 800 ---~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~ 855 (911)
..+..++..+..+++|+.|+|++|++++.++.....+++|+.+++++|++|+.++.
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 00111222567789999999999999999998888899999999999999987765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-44 Score=387.65 Aligned_cols=281 Identities=35% Similarity=0.643 Sum_probs=230.6
Q ss_pred hhhHHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 042327 159 LESTLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDD 236 (911)
Q Consensus 159 r~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 236 (911)
||+++++|.++|.+ ++.++|+|+||||+||||||+.++++. .++.+|+.++||.++...+...++..|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999996 468899999999999999999999999999987754
Q ss_pred cc-cccCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHhhhccc-cceEEeccCC
Q 042327 237 SW-RAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGFMEA-HRKFKMVCLS 314 (911)
Q Consensus 237 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~~~~~-~~~~~l~~L~ 314 (911)
.. ...+.++....+.+.|+++++||||||||+...|+.+...++ ....|++||||||+..++..+.. ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 33 456788899999999999999999999999999998887777 56679999999999999877665 6789999999
Q ss_pred HHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHHHHHHHHHhhcccCCCCCCCcccc
Q 042327 315 DNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYAIQLLSSSASQFPGFGEGVYP 394 (911)
Q Consensus 315 ~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~ 394 (911)
++||++||.+.++......++.+++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+........+....++.
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876542233455678999999999999999999999976557789999998887765444334467999
Q ss_pred hhhhccCCCCchhhhhHhhhhccCCCCcccCHHHHHHHHHhcCCcccC
Q 042327 395 LLKFSYDSLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGLLNES 442 (911)
Q Consensus 395 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~ 442 (911)
++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|+|...
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999 899999999999999999999999999999999763
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.3e-25 Score=235.68 Aligned_cols=370 Identities=22% Similarity=0.290 Sum_probs=249.9
Q ss_pred ccEEEEeCCccccCCC-ccccccceEeeccccccccc-CCCCCCCCccEEEccCCCC--CCcChhHHhcCCcccEEEccC
Q 042327 493 ENFLVYAGVGLTKAPD-VREWENVRRLSLMQNEITNL-KEIPTCPHLLTLFLDNNES--LKIPNDFFQYMHSLKVLNLSR 568 (911)
Q Consensus 493 ~~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~L~~ 568 (911)
-.|+......+..+|. +..+.+|.+|++..|++..+ ..++.++.||.+++..|++ ..+|+++|. +..|.+||||.
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc-cccceeeecch
Confidence 4566666666666663 67788999999999998876 4488999999999999964 578999765 99999999999
Q ss_pred CCCcccCccccCCCCCCEEeecCCCCcccccccc-CCccccEEeccccccccccChhhhcCCccccEEEccccccccccc
Q 042327 569 IKLKSFPLGISKLVSLQQLDLSYSSIKELPRELY-ALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLE 647 (911)
Q Consensus 569 ~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 647 (911)
|++++.|..+..-+++-.|+||+|+|..+|..+. +|.-|-.|||++| .+..+|+. +.+|..|++|.+++|....
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h--- 187 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH--- 187 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH---
Confidence 9999999999999999999999999999998865 7999999999998 78999998 8999999999999985432
Q ss_pred ccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEE
Q 042327 648 SLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRV 727 (911)
Q Consensus 648 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 727 (911)
..+..|..+++|+.|.++..+-+ +..+..+...+.++..++++. +++..++ ..+-.+++|+.|++
T Consensus 188 ------------fQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~-N~Lp~vP-ecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 188 ------------FQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSE-NNLPIVP-ECLYKLRNLRRLNL 252 (1255)
T ss_pred ------------HHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccc-cCCCcch-HHHhhhhhhheecc
Confidence 24445566667777777643321 222222222233455555543 3344443 34556778888888
Q ss_pred cccCCccceeec-------------cccccccCCCCCccCcccEEEeecccccc--cccc-cccCCCccEEEEecCcchh
Q 042327 728 FGCRKLEELKMD-------------YKRLVQATRQPCVFHGLHTVHIEVCLTLK--DLTF-LVFAPNLKYAEILNCPAME 791 (911)
Q Consensus 728 ~~~~~l~~l~~~-------------~~~~~~~~~~~~~l~~L~~L~L~~c~~l~--~l~~-l~~l~~L~~L~L~~c~~l~ 791 (911)
+++ .++.+... .+.+...|...+.++.|+.|.+.+| +++ .+|. ++++.+|+.+...+ +.++
T Consensus 253 S~N-~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aan-N~LE 329 (1255)
T KOG0444|consen 253 SGN-KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAAN-NKLE 329 (1255)
T ss_pred CcC-ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhc-cccc
Confidence 773 34433221 1111111222234445555544444 222 2332 44555555555544 2333
Q ss_pred HHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEccc
Q 042327 792 EIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDK 871 (911)
Q Consensus 792 ~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~ 871 (911)
-++ ..+..+++|+.|.|+. +.|-.+|..+.-+|-|+.|+++.+|+|---|- +...-..+...+.+.
T Consensus 330 lVP------------EglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK-P~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 330 LVP------------EGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK-PNDARKKLEFYNIDF 395 (1255)
T ss_pred cCc------------hhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC-cchhhhcceeeecce
Confidence 222 2677889999999986 66778888888899999999999999885544 333235677777776
Q ss_pred cccccceeCCcccccccccccccccCCCC
Q 042327 872 TWWINLKWEDEATQDAFRPCFKSLYPAGA 900 (911)
Q Consensus 872 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 900 (911)
..-.++.-......+.-.+..+.-.|+++
T Consensus 396 SLq~QlrlAG~~pasv~~s~~sg~~pkD~ 424 (1255)
T KOG0444|consen 396 SLQHQLRLAGQMPASVISSVHSGGAPKDA 424 (1255)
T ss_pred ehhhHHhhccCCccccccccccCCCCCch
Confidence 66666655544444444455666666654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1e-21 Score=246.18 Aligned_cols=330 Identities=19% Similarity=0.113 Sum_probs=195.3
Q ss_pred ccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc-ccCccccCCCCCCEEee
Q 042327 511 EWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK-SFPLGISKLVSLQQLDL 589 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L 589 (911)
.+++|++|++++|.+.+..+...+++|++|++++|.+....+..++.+++|++|+|++|.+. .+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 56677777777777665433455677777777777765443444677777777777777765 56777777777777777
Q ss_pred cCCCCc-cccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCC
Q 042327 590 SYSSIK-ELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGL 668 (911)
Q Consensus 590 ~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 668 (911)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|... ...+..++.+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~---------------~~~p~~l~~l 259 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT---------------GPIPSSLGNL 259 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec---------------cccChhHhCC
Confidence 777766 56777777777777777777555566665 777777777777776432 1234456667
Q ss_pred CCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCC
Q 042327 669 ESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATR 748 (911)
Q Consensus 669 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 748 (911)
++|+.|+++.|.+.... ........+++.|+++++.-.... ...+..+++|+.|+++++..... .+....
T Consensus 260 ~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~-~~~~~~------ 329 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPI--PPSIFSLQKLISLDLSDNSLSGEI-PELVIQLQNLEILHLFSNNFTGK-IPVALT------ 329 (968)
T ss_pred CCCCEEECcCCeeeccC--chhHhhccCcCEEECcCCeeccCC-ChhHcCCCCCcEEECCCCccCCc-CChhHh------
Confidence 77777777766543210 001112346666666655322222 23455666777777766542222 222222
Q ss_pred CCCccCcccEEEeeccccccccc-ccccCCCccEEEEecCcchhHHhcc----CCCCCc--------ccccCCCCccccc
Q 042327 749 QPCVFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILNCPAMEEIISA----GKFADV--------PEVMGNLNPFAKL 815 (911)
Q Consensus 749 ~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~----~~~~~~--------~~~~~~~~~~~~L 815 (911)
.+++|+.|+|++|.....+| .++.+++|+.|++++|.....++.. ..+..+ ......+..+++|
T Consensus 330 ---~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 330 ---SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred ---cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 46666666666664333444 3556666666666665432222110 000000 0011135567888
Q ss_pred ceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcc
Q 042327 816 HYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGD 870 (911)
Q Consensus 816 ~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~ 870 (911)
+.|++++|.....+|..+..+++|+.|++++|.--..+|.... .+.+|...+..
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~ 460 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLA 460 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECc
Confidence 8888888776666776677888888888888654444554322 24445554443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=5.7e-21 Score=239.36 Aligned_cols=335 Identities=18% Similarity=0.177 Sum_probs=200.5
Q ss_pred cccccceEeecccccccc-cCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc-ccCccccCCCCCCE
Q 042327 510 REWENVRRLSLMQNEITN-LKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK-SFPLGISKLVSLQQ 586 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 586 (911)
..+++|++|++++|.+.. +|. +..+++|++|++++|.+....+..+.++++|++|+|++|.+. .+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 446678888888887764 333 677788888888888765444444777888888888888776 56777888888888
Q ss_pred EeecCCCCc-cccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccc-------cccccccccCC-
Q 042327 587 LDLSYSSIK-ELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFL-------ESLKDSILFGG- 657 (911)
Q Consensus 587 L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~-------~~~~~~~~~~~- 657 (911)
|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|...... ..+....+..+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 888888776 67777788888888888887554566665 778888888888776432110 00000000000
Q ss_pred -chhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccce
Q 042327 658 -EEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEEL 736 (911)
Q Consensus 658 -~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 736 (911)
....+..+..+++|+.|+++.|.+..... ......++++.|.+.++.-...++ ..+..+++|+.|+++++. +...
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~-l~~~ 371 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNN-LTGE 371 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCe-eEee
Confidence 01122233344444444444433321100 000112344444444432211111 233444555555554432 2111
Q ss_pred eeccccccccCCCCCccCcccEEEeeccccccccc-ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCccccc
Q 042327 737 KMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKL 815 (911)
Q Consensus 737 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L 815 (911)
.+.+. +.+++|+.|++++|.....+| .++.+++|+.|++++|.....++. .+..+++|
T Consensus 372 ~p~~~---------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~------------~~~~l~~L 430 (968)
T PLN00113 372 IPEGL---------CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS------------EFTKLPLV 430 (968)
T ss_pred CChhH---------hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh------------hHhcCCCC
Confidence 11111 245677777777774444444 367788888888888765433322 56788999
Q ss_pred ceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcccc
Q 042327 816 HYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKT 872 (911)
Q Consensus 816 ~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~ 872 (911)
+.|+++++.....++.....+++|+.|++++|.....+|.... ..+|...+...+
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n 485 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRN 485 (968)
T ss_pred CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCC
Confidence 9999999876666666667899999999999988777887543 345555555433
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.6e-22 Score=211.84 Aligned_cols=334 Identities=19% Similarity=0.239 Sum_probs=183.3
Q ss_pred CccccCCCccccc-cceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-Cc
Q 042327 501 VGLTKAPDVREWE-NVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PL 576 (911)
Q Consensus 501 ~~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~ 576 (911)
+.++.+|.+.... ++..|+|.+|.|..+.+ +..++.||+|||+.|.+..++...|..-.++++|+|++|.|+.+ -.
T Consensus 112 N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 112 NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc
Confidence 3344444443332 35555555555554422 44455555555555555555554455445555555555555544 22
Q ss_pred cccCCCCCCEEeecCCCCccccccccC-CccccEEeccccccccccChhhhcCCccccEEEccccccccccccccccccc
Q 042327 577 GISKLVSLQQLDLSYSSIKELPRELYA-LVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILF 655 (911)
Q Consensus 577 ~i~~l~~L~~L~L~~~~i~~lp~~~~~-l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 655 (911)
.|.++.+|-+|.|++|.|+.+|.-..+ |++|+.|+|..| .+..+..-.|.+|.+|+.|.+..|...+.
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL---------- 260 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKL---------- 260 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccc----------
Confidence 344555555555555555555543332 555555555555 33433333355555555555555432211
Q ss_pred CCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccc
Q 042327 656 GGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEE 735 (911)
Q Consensus 656 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 735 (911)
.-..+-.|.++++|++..|++..+..-... ..+.++.|+++. +....+.+.+....+.|+.|+++. +.++.
T Consensus 261 -----~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~-N~i~~ 331 (873)
T KOG4194|consen 261 -----DDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSS-NRITR 331 (873)
T ss_pred -----cCcceeeecccceeecccchhhhhhccccc--ccchhhhhccch-hhhheeecchhhhcccceeEeccc-ccccc
Confidence 223355566777777777766554431111 123455555554 223334444444556777777765 44665
Q ss_pred eeeccccccccCCCCCccCcccEEEeeccccccccc--ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCccc
Q 042327 736 LKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFA 813 (911)
Q Consensus 736 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 813 (911)
++...+. .++.|+.|.|+.| .+.++. .+..+.+|+.|+|++|..--.| . .....+.++|
T Consensus 332 l~~~sf~---------~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~I-E--------Daa~~f~gl~ 392 (873)
T KOG4194|consen 332 LDEGSFR---------VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCI-E--------DAAVAFNGLP 392 (873)
T ss_pred CChhHHH---------HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEE-e--------cchhhhccch
Confidence 5555444 5677777777777 555553 3566778888888775433222 1 1122567799
Q ss_pred ccceeccCCCCccCccCC-CCCCCCCccEEeeCCCCCCCCCCCCCCC--CCCcc------eEEEccccccc
Q 042327 814 KLHYLGLVNLPNLRSIYW-KPLSLPQLKEMKVDGCFGLKKLPLKCNS--AQEQT------IVVHGDKTWWI 875 (911)
Q Consensus 814 ~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~l~~C~~L~~lP~~~~~--~l~~L------~~~~~~~~~~~ 875 (911)
+|+.|+|.+ ++++.|+. .+..+++|+.|++.++ -+.++-..... .|++| -+.+|+-.|..
T Consensus 393 ~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~ 461 (873)
T KOG4194|consen 393 SLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLA 461 (873)
T ss_pred hhhheeecC-ceeeecchhhhccCcccceecCCCC-cceeecccccccchhhhhhhcccceEEeccHHHHH
Confidence 999999998 67888886 3667899999999884 45554332222 22222 24577777764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.4e-23 Score=216.34 Aligned_cols=325 Identities=19% Similarity=0.234 Sum_probs=154.2
Q ss_pred cccccceEeecccccccccCCCCC-CCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEE
Q 042327 510 REWENVRRLSLMQNEITNLKEIPT-CPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQL 587 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L 587 (911)
.++++|+.+++.+|.++.+|.+.. ..+|..|+|.+|.+..+..+.++.++.||.||||.|.|+.+|. ++..-.++++|
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 344555555555555555555433 2335555555555555555555555555555555555555432 23333455555
Q ss_pred eecCCCCccccc-cccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhc
Q 042327 588 DLSYSSIKELPR-ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELL 666 (911)
Q Consensus 588 ~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 666 (911)
+|++|.|+.+-. .+.++.+|.+|.|+.| .++.+|..+|.+|++|+.|++..|... ......+.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir---------------ive~ltFq 242 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR---------------IVEGLTFQ 242 (873)
T ss_pred eeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee---------------eehhhhhc
Confidence 555555554432 2334555555555555 455555555555555555555554321 01122344
Q ss_pred CCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeecccccccc
Q 042327 667 GLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQA 746 (911)
Q Consensus 667 ~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 746 (911)
+|++|+.|.+..|++..++.-..- -+..++.|+|.. +.+..+.-.++-+++.|+.|+++. +.++.+.++.-.
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~Ws---- 314 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFY--GLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWS---- 314 (873)
T ss_pred CchhhhhhhhhhcCcccccCccee--eecccceeeccc-chhhhhhcccccccchhhhhccch-hhhheeecchhh----
Confidence 455555555555555444321111 123444444443 223333334444555555555553 234433322211
Q ss_pred CCCCCccCcccEEEeecccccccccc--cccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCC
Q 042327 747 TRQPCVFHGLHTVHIEVCLTLKDLTF--LVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLP 824 (911)
Q Consensus 747 ~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 824 (911)
..++|+.|+|+.| .++.++. +..|..|+.|.|++ +.+..+-. +.+.++.+|+.|+|+.+.
T Consensus 315 -----ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e-----------~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 315 -----FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAE-----------GAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred -----hcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHh-----------hHHHHhhhhhhhcCcCCe
Confidence 3455555555555 4444432 44555555555555 33443321 134445555555555532
Q ss_pred cc---CccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEccccccccc
Q 042327 825 NL---RSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKTWWINL 877 (911)
Q Consensus 825 ~L---~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~~~~~l 877 (911)
.- ++-...+..+|+|+.|.+.| ++|+.+|.-..+.++.|+..+...+-.-.+
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred EEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceee
Confidence 11 11111233355555555555 455555554444455555544444433333
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=3.6e-20 Score=231.71 Aligned_cols=317 Identities=20% Similarity=0.245 Sum_probs=223.0
Q ss_pred ccceEeeccccccccc----CCCCCCCCccEEEccCCCC-------CCcChhHHhcCCcccEEEccCCCCcccCccccCC
Q 042327 513 ENVRRLSLMQNEITNL----KEIPTCPHLLTLFLDNNES-------LKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKL 581 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 581 (911)
.+++.+++..+.+..+ ..|.++++|+.|.+..+.. ..+|.++..-...|++|.+.++.++.+|..+ ..
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 4566666665554432 2378899999999976532 2456653333357999999999999999887 57
Q ss_pred CCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhH
Q 042327 582 VSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVL 661 (911)
Q Consensus 582 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 661 (911)
.+|+.|++++|++..+|.++..+++|+.|++++|..+..+|. ++.+++|++|++.+|.... ..
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~---------------~l 673 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV---------------EL 673 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc---------------cc
Confidence 999999999999999999999999999999999988899996 8899999999999985432 24
Q ss_pred HHhhcCCCCCceEEEEEcc-hhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeecc
Q 042327 662 AEELLGLESLEVLTFTLRS-VRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDY 740 (911)
Q Consensus 662 ~~~l~~l~~L~~L~l~~~~-~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 740 (911)
+..+..+++|+.|+++.+. +..++. .. ..++|+.|.+.+|..+..++. ..++|+.|++.++. ++.++...
T Consensus 674 p~si~~L~~L~~L~L~~c~~L~~Lp~---~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~-i~~lP~~~ 744 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRCENLEILPT---GI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETA-IEEFPSNL 744 (1153)
T ss_pred chhhhccCCCCEEeCCCCCCcCccCC---cC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCc-cccccccc
Confidence 4567788889999887643 333322 11 356788888888876554431 13466666666543 33332110
Q ss_pred cccc--------------------ccC-CCCCccCcccEEEeecccccccccc-cccCCCccEEEEecCcchhHHhccCC
Q 042327 741 KRLV--------------------QAT-RQPCVFHGLHTVHIEVCLTLKDLTF-LVFAPNLKYAEILNCPAMEEIISAGK 798 (911)
Q Consensus 741 ~~~~--------------------~~~-~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~ 798 (911)
... ... .....+++|+.|+|++|+.+..+|. ++.+++|+.|+|++|+.++.++...
T Consensus 745 -~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 745 -RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred -cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 000 000 0011357899999999988888874 8899999999999999888775421
Q ss_pred CCCcccccCCCCcccccceeccCCCCcc--------------------CccCCCCCCCCCccEEeeCCCCCCCCCCCCCC
Q 042327 799 FADVPEVMGNLNPFAKLHYLGLVNLPNL--------------------RSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCN 858 (911)
Q Consensus 799 ~~~~~~~~~~~~~~~~L~~L~L~~~~~L--------------------~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~ 858 (911)
.+++|+.|+|++|..+ +.+|.....+++|+.|++++|++|+.+|....
T Consensus 823 ------------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 823 ------------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred ------------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 3455555555555444 44454556789999999999999999998654
Q ss_pred C--CCCcceEEEcc
Q 042327 859 S--AQEQTIVVHGD 870 (911)
Q Consensus 859 ~--~l~~L~~~~~~ 870 (911)
. .++.+.+.+|.
T Consensus 891 ~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 891 KLKHLETVDFSDCG 904 (1153)
T ss_pred cccCCCeeecCCCc
Confidence 3 34444444554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.3e-21 Score=207.59 Aligned_cols=326 Identities=18% Similarity=0.218 Sum_probs=241.6
Q ss_pred CccccccceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc--ccCccccCCCCC
Q 042327 508 DVREWENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK--SFPLGISKLVSL 584 (911)
Q Consensus 508 ~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L 584 (911)
+...++.++.|-|....+..+|. +..+.+|..|.+.+|++..+... +..++.||.+.++.|++. .+|..|-.|..|
T Consensus 27 ~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccc
Confidence 45667889999999888888876 78899999999999998877665 778999999999999887 689999999999
Q ss_pred CEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHh
Q 042327 585 QQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEE 664 (911)
Q Consensus 585 ~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (911)
..||||+|++++.|..+..-+++-.|+|++| ++..||..++-+|+.|-.|++++|.. ...+..
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrL----------------e~LPPQ 168 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRL----------------EMLPPQ 168 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchh----------------hhcCHH
Confidence 9999999999999999999999999999998 78999999899999999999998742 235566
Q ss_pred hcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeecccccc
Q 042327 665 LLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLV 744 (911)
Q Consensus 665 l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 744 (911)
...|.+|++|.++.|.+...+.- ....++++..|.+++.+..-.--+.++..+.+|..++++. +++..++....
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLr--QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly--- 242 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLR--QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLY--- 242 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHh--cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHh---
Confidence 77888999999998877544321 1122456666666665432222224677788999999974 55654433222
Q ss_pred ccCCCCCccCcccEEEeecccccccccc-cccCCCccEEEEecCcchhHHhcc-------------CCCCCcccccCCCC
Q 042327 745 QATRQPCVFHGLHTVHIEVCLTLKDLTF-LVFAPNLKYAEILNCPAMEEIISA-------------GKFADVPEVMGNLN 810 (911)
Q Consensus 745 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~-------------~~~~~~~~~~~~~~ 810 (911)
.+++|+.|+|++| .++.+.. .+...+|+.|+++. +.++.++.. ..--.++++++.++
T Consensus 243 -------~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 243 -------KLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred -------hhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 5788999999888 6666653 55567788888887 344444331 11112334445667
Q ss_pred cccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEc
Q 042327 811 PFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHG 869 (911)
Q Consensus 811 ~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~ 869 (911)
.+..|+.+...+ ++|+-+|.+.+.|+.|+.|.++. +.|-++|..+.- |+.|++.+.
T Consensus 314 KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHl-L~~l~vLDl 369 (1255)
T KOG0444|consen 314 KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHL-LPDLKVLDL 369 (1255)
T ss_pred hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhh-cCCcceeec
Confidence 777777777776 56777787788888888888854 778888877633 455555543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=2.2e-19 Score=181.97 Aligned_cols=323 Identities=23% Similarity=0.259 Sum_probs=195.1
Q ss_pred CCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCC
Q 042327 506 APDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQ 585 (911)
Q Consensus 506 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 585 (911)
+|+++.+.++..|++..|.+..+|+|+.|..|..|.+..|.+..+|....+++.+|.+|||++|+++++|.+++.+++|.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 35677888999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCcc--ccEEEcc-cccccccccccccccccCCchhHH
Q 042327 586 QLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSR--LHVLRMY-GTVSLNFLESLKDSILFGGEEVLA 662 (911)
Q Consensus 586 ~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~--L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 662 (911)
+||+++|.|+.+|.+++++ +|+.|-+.||+ +..+-.+++.+=+. |++|.=. .+...+..+.-......+ .....
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~-~~~~~ 355 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL-PSESF 355 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC-CCCcc
Confidence 9999999999999999999 99999999994 56665554432211 2222110 000000000000000000 11122
Q ss_pred HhhcCCCCCceEEEEEcchhhHHH-HHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccc
Q 042327 663 EELLGLESLEVLTFTLRSVRALQL-ILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYK 741 (911)
Q Consensus 663 ~~l~~l~~L~~L~l~~~~~~~l~~-l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 741 (911)
.....+.+.+.|+++...++.++. .+... ...-....+++.. .+..++ ..+..+..+.+.-+...+.+. ..+...
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~~~~Vt~VnfskN-qL~elP-k~L~~lkelvT~l~lsnn~is-fv~~~l 431 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAA-KSEIVTSVNFSKN-QLCELP-KRLVELKELVTDLVLSNNKIS-FVPLEL 431 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHh-hhcceEEEecccc-hHhhhh-hhhHHHHHHHHHHHhhcCccc-cchHHH
Confidence 233334556666666555444332 11111 0011222333221 111111 011111111111111111111 112222
Q ss_pred cccccCCCCCccCcccEEEeecccccccccc-cccCCCccEEEEecCcchhHHh-------------cc-CCCCCccccc
Q 042327 742 RLVQATRQPCVFHGLHTVHIEVCLTLKDLTF-LVFAPNLKYAEILNCPAMEEII-------------SA-GKFADVPEVM 806 (911)
Q Consensus 742 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~-------------~~-~~~~~~~~~~ 806 (911)
. .+++|..|+|++| .+.++|. ++.+-.|+.|+|+.+ ....++ .+ .+.+.++.
T Consensus 432 ~---------~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~-- 498 (565)
T KOG0472|consen 432 S---------QLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDP-- 498 (565)
T ss_pred H---------hhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccCh--
Confidence 1 5666666666665 4555553 555556666666654 222221 11 22222222
Q ss_pred CCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCC
Q 042327 807 GNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFG 849 (911)
Q Consensus 807 ~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~ 849 (911)
+.+..+.+|.+|+|.+ +.+..+|...++|.+|++|+++|+|-
T Consensus 499 ~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 1477889999999998 66899999999999999999999654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=2.5e-19 Score=181.57 Aligned_cols=213 Identities=27% Similarity=0.314 Sum_probs=113.2
Q ss_pred ccccccceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEE
Q 042327 509 VREWENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQL 587 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 587 (911)
+..+..+..++.+.|.+..+|. +....+|+.|+++.|.+..++++ ++.+..|..|+..+|+++++|.+++++.+|..|
T Consensus 87 ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 87 IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKL 165 (565)
T ss_pred HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhccccccccCchHHHHHHHHHHh
Confidence 3344444555555555544433 44455555555555555555554 333455555555555555555555555555555
Q ss_pred eecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccc-----cccCC--chh
Q 042327 588 DLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDS-----ILFGG--EEV 660 (911)
Q Consensus 588 ~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~--~~~ 660 (911)
++.+|+++++|+..-+++.|++||...| .++.+|++ ++.+.+|..|++..|............ ....+ ...
T Consensus 166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 166 DLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEML 243 (565)
T ss_pred hccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhh
Confidence 5555555555554444555555555544 44555554 555555555555544322111000000 00000 112
Q ss_pred HHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEccc
Q 042327 661 LAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGC 730 (911)
Q Consensus 661 ~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 730 (911)
..+.+.++++|..|++..|+++.++.-. .+.+++..|++++ +.++.++ .+++++ +|+.|.+.|.
T Consensus 244 pae~~~~L~~l~vLDLRdNklke~Pde~---clLrsL~rLDlSN-N~is~Lp-~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKEVPDEI---CLLRSLERLDLSN-NDISSLP-YSLGNL-HLKFLALEGN 307 (565)
T ss_pred HHHHhcccccceeeeccccccccCchHH---HHhhhhhhhcccC-CccccCC-cccccc-eeeehhhcCC
Confidence 2344568899999999999887665322 2345778888887 3455555 356667 7888877763
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=4.2e-17 Score=182.30 Aligned_cols=319 Identities=21% Similarity=0.256 Sum_probs=163.0
Q ss_pred ccccccceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccC-------
Q 042327 509 VREWENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISK------- 580 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~------- 580 (911)
+..+.+|+.|.++.|.+..+|. ..++.+|++|.|.+|.+..+|.+ +..+++|++|++++|.+..+|..+..
T Consensus 64 it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFNHFGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh-HHhhhcccccccchhccCCCchhHHhhhHHHHH
Confidence 3445677777777777766654 46677777777777777777666 66677777777777766555521110
Q ss_pred ---------------------------------CCCCC-EEeecCCCCccc-----c--------------------c--
Q 042327 581 ---------------------------------LVSLQ-QLDLSYSSIKEL-----P--------------------R-- 599 (911)
Q Consensus 581 ---------------------------------l~~L~-~L~L~~~~i~~l-----p--------------------~-- 599 (911)
..+|+ .|+|++|.+..+ + .
T Consensus 143 ~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~ 222 (1081)
T KOG0618|consen 143 AASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLT 222 (1081)
T ss_pred hhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchh
Confidence 01111 255555433200 0 0
Q ss_pred -------------cccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccc------cccccccCC-ch
Q 042327 600 -------------ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLES------LKDSILFGG-EE 659 (911)
Q Consensus 600 -------------~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~~~-~~ 659 (911)
....-.+|++++++.+ .+..+|. +++.+.+|+.|++..|........ +.......+ ..
T Consensus 223 ~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~ 300 (1081)
T KOG0618|consen 223 ALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE 300 (1081)
T ss_pred eeeeccCcceeeccccccccceeeecchh-hhhcchH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh
Confidence 0011235666666666 5677884 488888888888887754322110 000000000 12
Q ss_pred hHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeec
Q 042327 660 VLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMD 739 (911)
Q Consensus 660 ~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 739 (911)
..+..+.++++|++|++..|.+..++......- ...+..+..+. +.+..++-..=..++.|+.|++.++. +++-...
T Consensus 301 yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~-~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~p 377 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL-NASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNH-LTDSCFP 377 (1081)
T ss_pred hCCCcccccceeeeeeehhccccccchHHHhhh-hHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCc-ccccchh
Confidence 234456667888899998888776655222110 11112221111 11111110011123455555555532 2211111
Q ss_pred cccccccCCCCCccCcccEEEeecccccccccc--cccCCCccEEEEecCcchhHHhcc--------------CCCCCcc
Q 042327 740 YKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTF--LVFAPNLKYAEILNCPAMEEIISA--------------GKFADVP 803 (911)
Q Consensus 740 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~--------------~~~~~~~ 803 (911)
-. .++.+|+.|+|+.| .+..+|. +.+++.|++|+|++ +.++.++.. +.+..+|
T Consensus 378 ~l---------~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 378 VL---------VNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred hh---------ccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeech
Confidence 11 15677777777776 5666653 56677777777777 344444321 0111111
Q ss_pred cccCCCCcccccceeccCCCCccCccCCCCCC-CCCccEEeeCCCCC
Q 042327 804 EVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLS-LPQLKEMKVDGCFG 849 (911)
Q Consensus 804 ~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~-~~~L~~L~l~~C~~ 849 (911)
.+..+|.|+.++++. ++|..+...... .|+|++|+++|++.
T Consensus 447 ----e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ----ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ----hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 244566667777764 445544332222 26777777777654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=5.9e-15 Score=171.17 Aligned_cols=131 Identities=24% Similarity=0.260 Sum_probs=88.5
Q ss_pred ccEEEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc
Q 042327 493 ENFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK 572 (911)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 572 (911)
...+...+..++.+|.. -..+++.|++.+|.+..+|.. .++|++|++++|.++.+|.. .++|+.|++++|.++
T Consensus 203 ~~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 203 NAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLT 275 (788)
T ss_pred CcEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchh
Confidence 33455555566666541 234778888888888777654 46788888888887777642 457788888888877
Q ss_pred ccCccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccc
Q 042327 573 SFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 573 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 641 (911)
.+|... .+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. ..+|+.|++++|.
T Consensus 276 ~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~ 333 (788)
T PRK15387 276 HLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQ 333 (788)
T ss_pred hhhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCc
Confidence 777532 5677788888888877753 467888888877 56666652 2346667777653
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.3e-16 Score=143.31 Aligned_cols=162 Identities=24% Similarity=0.440 Sum_probs=141.0
Q ss_pred cCCCccccccceEeecccccccccC-CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCC
Q 042327 505 KAPDVREWENVRRLSLMQNEITNLK-EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVS 583 (911)
Q Consensus 505 ~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 583 (911)
+++.+-.++++++|.++.|.+..+| .+..+.+|++|++++|++..+|.+ ++.++.|+.|+++-|.+..+|.++|.++.
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCch
Confidence 4556667788999999999998874 489999999999999999999988 78899999999999999999999999999
Q ss_pred CCEEeecCCCCc--cccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhH
Q 042327 584 LQQLDLSYSSIK--ELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVL 661 (911)
Q Consensus 584 L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 661 (911)
|+.|||++|++. .+|..+..+..|+.|++++| ....+|++ ++++++||.|.+..|.. ...
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndl----------------l~l 165 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDL----------------LSL 165 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCch----------------hhC
Confidence 999999999887 78988999999999999998 56888988 89999999999988743 235
Q ss_pred HHhhcCCCCCceEEEEEcchhhHH
Q 042327 662 AEELLGLESLEVLTFTLRSVRALQ 685 (911)
Q Consensus 662 ~~~l~~l~~L~~L~l~~~~~~~l~ 685 (911)
+.+++.++.|+.|.+..|.+..++
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecC
Confidence 778888999999999888776544
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.53 E-value=7e-15 Score=174.53 Aligned_cols=322 Identities=20% Similarity=0.274 Sum_probs=198.1
Q ss_pred EEEeCCccccCCCccccccceEeeccccc--ccccCC--CCCCCCccEEEccCC-CCCCcChhHHhcCCcccEEEccCCC
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNE--ITNLKE--IPTCPHLLTLFLDNN-ESLKIPNDFFQYMHSLKVLNLSRIK 570 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~ 570 (911)
++..++....++.-..+++++.|-+..|. +..++. |..++.|++||+++| .+..+|.. ++.+-+||||+|+++.
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTG 606 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCC
Confidence 44444455455555566789999999986 566655 788999999999998 47888876 8889999999999999
Q ss_pred CcccCccccCCCCCCEEeecCCCC-ccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccc
Q 042327 571 LKSFPLGISKLVSLQQLDLSYSSI-KELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESL 649 (911)
Q Consensus 571 i~~lp~~i~~l~~L~~L~L~~~~i-~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 649 (911)
++.+|.++++|+.|.+||+..+.- ..+|.....|++|++|.+.... .......++.+.+|++|....+...
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~------ 678 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITIS------ 678 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecc------
Confidence 999999999999999999999854 4555555669999999997753 1112222444444444444332111
Q ss_pred ccccccCCchhHHHhhcCCCCCceEEEEEc-chhhHHHHHhhccccccceeeEecccCCCCccc--c--CChh-cccccc
Q 042327 650 KDSILFGGEEVLAEELLGLESLEVLTFTLR-SVRALQLILISHKLRSCTQALFLQSFNDSTSLD--V--SPLA-DLKHLY 723 (911)
Q Consensus 650 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~--~--~~l~-~l~~L~ 723 (911)
.......+..++.|.++..... ..........+.....+++.|.+.+|...+... . .... .++++.
T Consensus 679 --------s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 679 --------SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred --------hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 1112222333333332211110 001112222223345677777777776532211 0 0111 245677
Q ss_pred eEEEcccCCccceeeccccccccCCCCCccCcccEEEeecccccccc-cccccCCCccEEEEecCcchhHHhccCCCCCc
Q 042327 724 RLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDL-TFLVFAPNLKYAEILNCPAMEEIISAGKFADV 802 (911)
Q Consensus 724 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~ 802 (911)
.+.+.+|..++. +.|.. ..|+|+.|++..|..++++ |....+..++.+.+..+. .....
T Consensus 751 ~~~~~~~~~~r~--l~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~-------- 810 (889)
T KOG4658|consen 751 KVSILNCHMLRD--LTWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLR-------- 810 (889)
T ss_pred HHHhhccccccc--cchhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-cccce--------
Confidence 777788887773 44443 6899999999999888875 445555555554443322 11110
Q ss_pred ccccCCCCcccccceeccCCCCccCccCCCC----CCCCCccEEeeCCC-CCCCCCCCCC
Q 042327 803 PEVMGNLNPFAKLHYLGLVNLPNLRSIYWKP----LSLPQLKEMKVDGC-FGLKKLPLKC 857 (911)
Q Consensus 803 ~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~----~~~~~L~~L~l~~C-~~L~~lP~~~ 857 (911)
...+.++||++..+.+.... +..+.... ..+|.+.++.+.+| +++..+|...
T Consensus 811 --~~~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 811 --MLCSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred --eeecCCCCceeEecccCccc-hhheehhcCcccccCccccccceeccccceeecCCcc
Confidence 01134445555555554422 44443333 45789999999997 8999999864
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=2.2e-15 Score=168.81 Aligned_cols=279 Identities=22% Similarity=0.216 Sum_probs=131.4
Q ss_pred CCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEEecc
Q 042327 534 CPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLE 613 (911)
Q Consensus 534 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 613 (911)
+-+|++|++++|.+...|.. +..+.+|+.|+++.|.|.++|.+++++.+|++|+|.+|.+..+|.++..+++|+.|+++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeeEEeeccccccccCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 33455555555555555544 34455555555555555555555555555555555555555555555555555555555
Q ss_pred ccccccccChhhhcCCccccEEEcccccccccccc--ccccccc--CCchhHHHhhcCCCCCceEEEEEcchhhHHHHHh
Q 042327 614 HAEELITIPQQVISNFSRLHVLRMYGTVSLNFLES--LKDSILF--GGEEVLAEELLGLESLEVLTFTLRSVRALQLILI 689 (911)
Q Consensus 614 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~ 689 (911)
+| ....+|.- +..++.+..+..++|.....+.. .....+. ......+.++..+++ .|++..|.+..+.. .
T Consensus 123 ~N-~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl-s- 196 (1081)
T KOG0618|consen 123 FN-HFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL-S- 196 (1081)
T ss_pred hh-ccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh-h-
Confidence 55 33445543 45555555555554411100000 0000000 002223334444444 46666666542111 0
Q ss_pred hccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccc
Q 042327 690 SHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKD 769 (911)
Q Consensus 690 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 769 (911)
....++.+... ++.+..+.. .-++|+.|+...|... .+... + ...+|++++++.+ .+..
T Consensus 197 ---~~~~l~~l~c~-rn~ls~l~~----~g~~l~~L~a~~n~l~-~~~~~----------p-~p~nl~~~dis~n-~l~~ 255 (1081)
T KOG0618|consen 197 ---NLANLEVLHCE-RNQLSELEI----SGPSLTALYADHNPLT-TLDVH----------P-VPLNLQYLDISHN-NLSN 255 (1081)
T ss_pred ---hccchhhhhhh-hcccceEEe----cCcchheeeeccCcce-eeccc----------c-ccccceeeecchh-hhhc
Confidence 01111111111 011111111 1245555555554422 11111 1 4678888888887 4555
Q ss_pred cc-ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCC
Q 042327 770 LT-FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCF 848 (911)
Q Consensus 770 l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~ 848 (911)
+| |++.+++|+.|.+.++. +..++. .+....+|+.|.+..| .++.++.....+.+|++|++.. +
T Consensus 256 lp~wi~~~~nle~l~~n~N~-l~~lp~------------ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N 320 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNR-LVALPL------------RISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-N 320 (1081)
T ss_pred chHHHHhcccceEecccchh-HHhhHH------------HHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-c
Confidence 54 78888899988888743 344433 2233344444444442 3444444444445555555544 3
Q ss_pred CCCCCCC
Q 042327 849 GLKKLPL 855 (911)
Q Consensus 849 ~L~~lP~ 855 (911)
+|..+|.
T Consensus 321 ~L~~lp~ 327 (1081)
T KOG0618|consen 321 NLPSLPD 327 (1081)
T ss_pred cccccch
Confidence 4444443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.6e-13 Score=159.37 Aligned_cols=255 Identities=20% Similarity=0.208 Sum_probs=189.1
Q ss_pred cceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCC
Q 042327 514 NVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYS 592 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 592 (911)
.-..|+++.+.+..+|. +. ++|+.|++.+|+++.+|.. +++|++|+|++|+++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 45578999999888876 33 5899999999999998863 68999999999999999854 468999999999
Q ss_pred CCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCc
Q 042327 593 SIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLE 672 (911)
Q Consensus 593 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 672 (911)
.++.+|.. ..+|+.|++++| .+..+|.. +++|++|++++|....+ + . ...+|+
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~L----------------p-~--lp~~L~ 325 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL----------------P-A--LPSELC 325 (788)
T ss_pred chhhhhhc---hhhcCEEECcCC-cccccccc----ccccceeECCCCccccC----------------C-C--Cccccc
Confidence 99998863 367889999998 67888863 47899999998854321 0 0 113577
Q ss_pred eEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCc
Q 042327 673 VLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCV 752 (911)
Q Consensus 673 ~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 752 (911)
.|.++.|.+..++. +...|+.|+++++ .++.++. + .++|+.|+++++ .+..++. .
T Consensus 326 ~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N-~Ls~LP~--l--p~~L~~L~Ls~N-~L~~LP~-------------l 380 (788)
T PRK15387 326 KLWAYNNQLTSLPT------LPSGLQELSVSDN-QLASLPT--L--PSELYKLWAYNN-RLTSLPA-------------L 380 (788)
T ss_pred ccccccCccccccc------cccccceEecCCC-ccCCCCC--C--Ccccceehhhcc-ccccCcc-------------c
Confidence 78888887766543 2357888888874 4554432 1 357788887763 4543321 3
Q ss_pred cCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCC
Q 042327 753 FHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWK 832 (911)
Q Consensus 753 l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~ 832 (911)
+++|+.|+|++| .+..+|.. .++|+.|++++|. +..++. .+.+|+.|++++ +.++.+|..
T Consensus 381 ~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~-NqLt~LP~s 440 (788)
T PRK15387 381 PSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYR-NQLTRLPES 440 (788)
T ss_pred ccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhcc-CcccccChH
Confidence 467999999998 67777653 3689999999964 443321 135788999998 558899988
Q ss_pred CCCCCCccEEeeCCCCC
Q 042327 833 PLSLPQLKEMKVDGCFG 849 (911)
Q Consensus 833 ~~~~~~L~~L~l~~C~~ 849 (911)
+..+++|+.|++++++-
T Consensus 441 l~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 441 LIHLSSETTVNLEGNPL 457 (788)
T ss_pred HhhccCCCeEECCCCCC
Confidence 88899999999999754
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=2e-13 Score=159.78 Aligned_cols=116 Identities=26% Similarity=0.393 Sum_probs=69.7
Q ss_pred ccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCC
Q 042327 513 ENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYS 592 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 592 (911)
++++.|++++|.+..+|.. .+++|++|++++|.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 4566667776666665542 12466777777666666665432 356667777776666665553 35667777766
Q ss_pred CCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccc
Q 042327 593 SIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 593 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
+++.+|..+. .+|++|++++| .+..+|.. +. ++|++|++++|
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N 314 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSN 314 (754)
T ss_pred ccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCC
Confidence 6666665443 36667777666 45556643 21 35666666655
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=1.2e-13 Score=161.77 Aligned_cols=219 Identities=25% Similarity=0.314 Sum_probs=141.4
Q ss_pred cceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCC
Q 042327 514 NVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYS 592 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 592 (911)
+...|.+.++.++.+|. ++ ++|+.|++++|.++.+|...+ .+|++|++++|.++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 45678888888887765 43 589999999999999998754 589999999999999997664 47999999999
Q ss_pred CCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCc
Q 042327 593 SIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLE 672 (911)
Q Consensus 593 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 672 (911)
.+..+|..+. .+|+.|++++| .+..+|.. +. ++|+.|++++|....+ +..+. ++|+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L----------------P~~lp--~sL~ 307 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTL----------------PAHLP--SGIT 307 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccC----------------cccch--hhHH
Confidence 9999998765 58999999987 67888875 33 5899999998743221 11111 3466
Q ss_pred eEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCc
Q 042327 673 VLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCV 752 (911)
Q Consensus 673 ~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 752 (911)
.|+++.|.+..++. ...++++.|.+.++. ++.++. .+ +++|+.|++++|. +..++.. .
T Consensus 308 ~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~-Lt~LP~-~l--~~sL~~L~Ls~N~-L~~LP~~------------l 365 (754)
T PRK15370 308 HLNVQSNSLTALPE-----TLPPGLKTLEAGENA-LTSLPA-SL--PPELQVLDVSKNQ-ITVLPET------------L 365 (754)
T ss_pred HHHhcCCccccCCc-----cccccceeccccCCc-cccCCh-hh--cCcccEEECCCCC-CCcCChh------------h
Confidence 66777666554321 122355555555542 333321 11 2456666666542 3322210 1
Q ss_pred cCcccEEEeecccccccccccccCCCccEEEEecC
Q 042327 753 FHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNC 787 (911)
Q Consensus 753 l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 787 (911)
.++|+.|+|++| .+..+|.- ..++|+.|++++|
T Consensus 366 p~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N 398 (754)
T PRK15370 366 PPTITTLDVSRN-ALTNLPEN-LPAALQIMQASRN 398 (754)
T ss_pred cCCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccC
Confidence 345666666666 34444421 1124555666553
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=2.7e-15 Score=152.56 Aligned_cols=300 Identities=19% Similarity=0.189 Sum_probs=172.6
Q ss_pred cEEEEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccC-CC
Q 042327 494 NFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSR-IK 570 (911)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~ 570 (911)
..+...+.++.++|. .-.+....+.|..|.|+.+|+ |..+++||.|+|++|.|+.|.++.|+++..|..|-+.+ |+
T Consensus 49 ~~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred ceEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 344555666766664 122466777888888888765 77888888888888888888888888888777776666 78
Q ss_pred CcccCcc-ccCCCCCCEEeecCCCCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccccc--cc
Q 042327 571 LKSFPLG-ISKLVSLQQLDLSYSSIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLN--FL 646 (911)
Q Consensus 571 i~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~--~~ 646 (911)
|+.+|.. +++|..|+.|.+.-|.+..++.. +..+++|..|.+.+| .+..++.+.+..+..++++.+..|.... .+
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccccccc
Confidence 8888753 67788888888888888766543 556888888888887 5677777667788888888777654210 00
Q ss_pred cccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEE
Q 042327 647 ESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLR 726 (911)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 726 (911)
.++... ....+.+++..+......+..+.+..+++-..... ...+.+--.+.|.-....+...|..+++|++|+
T Consensus 207 ~wla~~-----~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 207 PWLADD-----LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred chhhhH-----HhhchhhcccceecchHHHHHHHhcccchhhhhhh-HHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 000000 00011122222211111111111111110000000 000000001112111122223467788899998
Q ss_pred EcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc--ccccCCCccEEEEecCcchhHHhccCCCCCccc
Q 042327 727 VFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPE 804 (911)
Q Consensus 727 l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~ 804 (911)
+++ +.++.+...|+. ....++.|.|.+| ++..+. .+..+..|+.|+|.+| .++.+..
T Consensus 281 lsn-N~i~~i~~~aFe---------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~--------- 339 (498)
T KOG4237|consen 281 LSN-NKITRIEDGAFE---------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAP--------- 339 (498)
T ss_pred cCC-Cccchhhhhhhc---------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEec---------
Confidence 887 457767666666 5677788888777 566654 3667778888888774 4444321
Q ss_pred ccCCCCcccccceeccCCCC
Q 042327 805 VMGNLNPFAKLHYLGLVNLP 824 (911)
Q Consensus 805 ~~~~~~~~~~L~~L~L~~~~ 824 (911)
..+....+|.+|.|-.+|
T Consensus 340 --~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 340 --GAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred --ccccccceeeeeehccCc
Confidence 134445555666554433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-14 Score=130.76 Aligned_cols=134 Identities=29% Similarity=0.478 Sum_probs=123.2
Q ss_pred CCCccccccceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc--ccCccccCCC
Q 042327 506 APDVREWENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK--SFPLGISKLV 582 (911)
Q Consensus 506 ~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~ 582 (911)
.|.+..+.+++.|++.+|+++.+|. ++.+++||.|++.-|++..+|.+ |+.++.|++|||.+|++. .+|..+..+.
T Consensus 49 ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccccccccCCcchhHHH
Confidence 4677888999999999999999865 89999999999999999888888 899999999999999887 6899998999
Q ss_pred CCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccc
Q 042327 583 SLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 583 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
.|+-|+|++|.+..+|.+++++++|+.|.++.| .+-.+|.+ ++.+++|++|.+.+|..
T Consensus 128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred HHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhccccee
Confidence 999999999999999999999999999999999 56789998 99999999999998753
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=3.4e-14 Score=144.65 Aligned_cols=272 Identities=19% Similarity=0.197 Sum_probs=172.7
Q ss_pred CCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecC-CCCccccccc-cCCccccEEe
Q 042327 535 PHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSY-SSIKELPREL-YALVNLKCLN 611 (911)
Q Consensus 535 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~-~~i~~lp~~~-~~l~~L~~L~ 611 (911)
+.-..+.|..|.|+.+|++.|+.+++||.||||+|+|+.+ |..+.+|.+|-.|-+.+ |+|+.+|+.. +.|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3567889999999999999999999999999999999987 88999999988777766 8999999874 5699999999
Q ss_pred ccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhh------HH
Q 042327 612 LEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRA------LQ 685 (911)
Q Consensus 612 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------l~ 685 (911)
+.-| .+.-++.+++..|++|..|.+++|....+ .-..+..+..++.+.+..|.... +.
T Consensus 147 lNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i---------------~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 147 LNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSI---------------CKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred cChh-hhcchhHHHHHHhhhcchhcccchhhhhh---------------ccccccchhccchHhhhcCccccccccchhh
Confidence 9888 67888988899999999999998743221 11234555666666655444211 11
Q ss_pred HHHhhc----cccccceeeEecccCCCCccccCChhcccccceE---EEcccCCccceeeccccccccCCCCCccCcccE
Q 042327 686 LILISH----KLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRL---RVFGCRKLEELKMDYKRLVQATRQPCVFHGLHT 758 (911)
Q Consensus 686 ~l~~~~----~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L---~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 758 (911)
...... ....+.....+.+ ......+...+ ...++.+ -.+.|.-....+..-+ ..+++|++
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~-~Ri~q~~a~kf--~c~~esl~s~~~~~d~~d~~cP~~cf---------~~L~~L~~ 278 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYY-KRINQEDARKF--LCSLESLPSRLSSEDFPDSICPAKCF---------KKLPNLRK 278 (498)
T ss_pred hHHhhchhhcccceecchHHHHH-HHhcccchhhh--hhhHHhHHHhhccccCcCCcChHHHH---------hhcccceE
Confidence 000000 0000000000000 00000100000 0011111 0011111110011111 16889999
Q ss_pred EEeeccccccccc--ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCcc-CCCCCC
Q 042327 759 VHIEVCLTLKDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSI-YWKPLS 835 (911)
Q Consensus 759 L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i-~~~~~~ 835 (911)
|+|++| .++.+. ++..+..|++|.|.. +.++.+-. ..+.++..|++|+|.++. ++.+ |..+..
T Consensus 279 lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~-----------~~f~~ls~L~tL~L~~N~-it~~~~~aF~~ 344 (498)
T KOG4237|consen 279 LNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS-----------GMFQGLSGLKTLSLYDNQ-ITTVAPGAFQT 344 (498)
T ss_pred eccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH-----------HhhhccccceeeeecCCe-eEEEecccccc
Confidence 999988 677663 688888999999988 45665532 156778889999999954 5444 445666
Q ss_pred CCCccEEeeCCCC
Q 042327 836 LPQLKEMKVDGCF 848 (911)
Q Consensus 836 ~~~L~~L~l~~C~ 848 (911)
+.+|.+|++-.+|
T Consensus 345 ~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 LFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeeehccCc
Confidence 7788888876543
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=1.2e-09 Score=122.28 Aligned_cols=294 Identities=16% Similarity=0.100 Sum_probs=169.7
Q ss_pred CCcccchhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIA 228 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 228 (911)
++.++||+++++++...+.. .....+.|+|++|+|||++++.++++. ......-..+++.+....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 46789999999999888743 344668899999999999999999987 2222234567777777778888999999
Q ss_pred HHcCCCCCcccccCHHHHHHHHHHHcc--CCcEEEEEccccccc------ccccccccCCCCCCCCcE--EEEEcCchhH
Q 042327 229 KQMGFFDDSWRAKSVEEKALEIFNSLS--EKKFVLLLDDVWERV------DLTKVGVPLPRPKNMASK--VVFTTRSEEV 298 (911)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~~~~~~~~~s~--iivTtR~~~v 298 (911)
+++..........+.++....+.+.+. +++.+||||+++... .+..+..... ...+++ +|.++....+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~--~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE--EYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh--ccCCCeEEEEEEECCcch
Confidence 998652211123345666777777764 456899999997532 1222222111 112333 6666665543
Q ss_pred hhhcc-------ccceEEeccCCHHHHHHHHHHHhcCc---ccCCCccHHHHHHHHHHHcCCChhHHHHHHhhh----cC
Q 042327 299 CGFME-------AHRKFKMVCLSDNDSWDLFQQKVGKE---ILNSHPDILELAQTVARECGGLPLALITIGRAM----AC 364 (911)
Q Consensus 299 ~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~---~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l----~~ 364 (911)
..... ....+.+++++.++..+++...+... ..-.+..++.+++......|..+.|+..+-.+. ..
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22211 12467999999999999999876321 111222334444444444566777777664322 11
Q ss_pred C---CCHHHHHHHHHHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhc-cCCC-CcccCHHHHHHH--HHhcC
Q 042327 365 K---KTPEEWRYAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCS-LYPE-DYCISKENLIDC--WIGEG 437 (911)
Q Consensus 365 ~---~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~-~fp~-~~~i~~~~li~~--wiaeg 437 (911)
+ -+.+....+.+.... ....-.+..||. +.|..+..++ .... ...+...++... .+++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 244555554443311 123445778987 4343332222 1211 133555555432 22221
Q ss_pred CcccCccchhhhhHHHHHHHHHHhccccc
Q 042327 438 LLNESDRFGEQNQGYFILGILLHACLLEE 466 (911)
Q Consensus 438 ~i~~~~~~~~~~~~~~~l~~L~~~~ll~~ 466 (911)
+-. ..........|++.|...++++.
T Consensus 332 ~~~---~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 332 LGY---EPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCC---CcCcHHHHHHHHHHHHhcCCeEE
Confidence 100 01123445668888888888875
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=6.7e-10 Score=139.01 Aligned_cols=291 Identities=15% Similarity=0.178 Sum_probs=177.2
Q ss_pred CCcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHc
Q 042327 153 DPTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQM 231 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l 231 (911)
.+.+|-|+.-.+++-+ ....+++.|.|++|.||||++....+.. +.++|+++.. +.+...+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~-------~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK-------NNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC-------CCeEEEecCcccCCHHHHHHHHHHHH
Confidence 3456777755554432 1357899999999999999999987543 1589999965 445666667777666
Q ss_pred CCCCCc-----------ccccCHHHHHHHHHHHcc--CCcEEEEEccccccc--ccc-cccccCCCCCCCCcEEEEEcCc
Q 042327 232 GFFDDS-----------WRAKSVEEKALEIFNSLS--EKKFVLLLDDVWERV--DLT-KVGVPLPRPKNMASKVVFTTRS 295 (911)
Q Consensus 232 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~-~~~~~~~~~~~~~s~iivTtR~ 295 (911)
+..... ....+.......+...+. +.+++|||||+.... ... .+...+. ....+.++|||||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~~sR~ 161 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVVLSRN 161 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEEEeCC
Confidence 311110 011222333444444443 689999999995432 112 2222222 33456789899998
Q ss_pred hhHh---hhccccceEEec----cCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCH
Q 042327 296 EEVC---GFMEAHRKFKMV----CLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTP 368 (911)
Q Consensus 296 ~~v~---~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~ 368 (911)
..-. ..........+. +|+.+|+.++|....+... + .+....|.+.|+|.|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 4211 111112344555 9999999999987665432 1 2456789999999999999988776543210
Q ss_pred HHHHHHHHHHhhcccCCCCC-CCcccchhh-hccCCCCchhhhhHhhhhccCCCCcccCHHHHHHHHHhcCCcccCccch
Q 042327 369 EEWRYAIQLLSSSASQFPGF-GEGVYPLLK-FSYDSLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGLLNESDRFG 446 (911)
Q Consensus 369 ~~w~~~~~~l~~~~~~~~~~-~~~v~~~l~-~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~ 446 (911)
.. .....+ .+. ...+...+. -.++.||+ ..+..++..|+++ .++.+ +.. .+.
T Consensus 236 ~~--~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~------- 289 (903)
T PRK04841 236 LH--DSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVT------- 289 (903)
T ss_pred hh--hhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHc-------
Confidence 00 000111 110 112333333 24789999 7999999999987 33322 221 111
Q ss_pred hhhhHHHHHHHHHHhccccc-c--CCCeeecchhHHHHHHHHH
Q 042327 447 EQNQGYFILGILLHACLLEE-G--GDGEVKMHDVIRDMSLWIA 486 (911)
Q Consensus 447 ~~~~~~~~l~~L~~~~ll~~-~--~~~~~~mhdlv~~~a~~~~ 486 (911)
..+.....+++|.+.+++.. . +...|+.|++++++.+.-.
T Consensus 290 ~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 290 GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 12334677999999998653 2 3357899999999987654
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=5.7e-09 Score=110.33 Aligned_cols=182 Identities=13% Similarity=0.163 Sum_probs=113.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
.+..++.|+|++|+||||+++.+++.. .. ... ..+|+ +....+..+++..|+..++.... ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 345689999999999999999999987 21 111 22343 33345778899999999887542 2222333333332
Q ss_pred H-----ccCCcEEEEEccccccc--ccccccccCC--CCCCCCcEEEEEcCchhHhhhcc----------ccceEEeccC
Q 042327 253 S-----LSEKKFVLLLDDVWERV--DLTKVGVPLP--RPKNMASKVVFTTRSEEVCGFME----------AHRKFKMVCL 313 (911)
Q Consensus 253 ~-----l~~k~~LlVlDdv~~~~--~~~~~~~~~~--~~~~~~s~iivTtR~~~v~~~~~----------~~~~~~l~~L 313 (911)
. ..+++.++|+||++... .++.+..... ........|++|.... ....+. ....+.++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 26788999999998643 3443322111 0112233455655432 211111 1346789999
Q ss_pred CHHHHHHHHHHHhcCcccCCC-ccHHHHHHHHHHHcCCChhHHHHHHhhh
Q 042327 314 SDNDSWDLFQQKVGKEILNSH-PDILELAQTVARECGGLPLALITIGRAM 362 (911)
Q Consensus 314 ~~~e~~~Lf~~~~~~~~~~~~-~~l~~~~~~i~~~c~g~Plai~~~~~~l 362 (911)
+.+|..+++...+........ .--.+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999877643221111 1224678899999999999999888765
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.14 E-value=3.2e-10 Score=117.30 Aligned_cols=197 Identities=16% Similarity=0.185 Sum_probs=102.3
Q ss_pred ccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHH---------H
Q 042327 156 VVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQE---------V 226 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---------~ 226 (911)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. +..-..++|+...+......+.. .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 68999999999999988778899999999999999999999986 22111344554444332221111 1
Q ss_pred ----HHHHcCCCCC-c---ccccCHHHHHHHHHHHcc--CCcEEEEEccccccc-ccc-------cccccCCC-CCCCCc
Q 042327 227 ----IAKQMGFFDD-S---WRAKSVEEKALEIFNSLS--EKKFVLLLDDVWERV-DLT-------KVGVPLPR-PKNMAS 287 (911)
Q Consensus 227 ----i~~~l~~~~~-~---~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~~-------~~~~~~~~-~~~~~s 287 (911)
+...+..... . ............+.+.+. +++++||+||+.... ... .+...+.. .....-
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1111111000 0 001112223333333332 345999999996544 111 11111110 122334
Q ss_pred EEEEEcCchhHhhh--------ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHH
Q 042327 288 KVVFTTRSEEVCGF--------MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALIT 357 (911)
Q Consensus 288 ~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~ 357 (911)
.+|+++........ .+....+.+++|+.+++++++...+... ... +.-.+..++|...+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555544444322 2233459999999999999999976544 121 12234568999999999988754
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=4.8e-11 Score=113.79 Aligned_cols=107 Identities=31% Similarity=0.401 Sum_probs=24.4
Q ss_pred CccccccceEeecccccccccCCCC-CCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccc-cCCCCCC
Q 042327 508 DVREWENVRRLSLMQNEITNLKEIP-TCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQ 585 (911)
Q Consensus 508 ~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~ 585 (911)
...++.+++.|+|.+|.|+.+..+. .+.+|++|++++|.+..++. +..++.|+.|++++|.|+.++..+ ..+++|+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3333445555555555555554443 34555555555555555442 444555555555555555554333 2355555
Q ss_pred EEeecCCCCcccc--ccccCCccccEEeccccc
Q 042327 586 QLDLSYSSIKELP--RELYALVNLKCLNLEHAE 616 (911)
Q Consensus 586 ~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~ 616 (911)
+|++++|+|..+. ..+..+++|+.|++.+|+
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 5555555554332 123345555555555553
No 29
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.13 E-value=2.3e-08 Score=110.80 Aligned_cols=296 Identities=14% Similarity=0.096 Sum_probs=165.4
Q ss_pred CCcccchhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC---ceEEEEEeCCccCHHHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF---DCVIWVVVSKDLRVEYIQE 225 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~ 225 (911)
++.++||++++++|..++.. .....+.|+|++|+|||++++.+++......... -..+|+.+....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 35689999999999988863 3456789999999999999999998762111111 2457788877777888999
Q ss_pred HHHHHcC---CCCCcccccCHHHHHHHHHHHcc--CCcEEEEEccccccc-c----ccccccc--CCCCCCCCcEEEEEc
Q 042327 226 VIAKQMG---FFDDSWRAKSVEEKALEIFNSLS--EKKFVLLLDDVWERV-D----LTKVGVP--LPRPKNMASKVVFTT 293 (911)
Q Consensus 226 ~i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~~~~~--~~~~~~~~s~iivTt 293 (911)
.|++++. ...+. ...+..+....+.+.+. +++++||||+++... . +..+... .....+....+|.+|
T Consensus 94 ~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 9999883 22111 22344555566666653 567899999997541 1 1222111 010111233455555
Q ss_pred CchhHhhhcc-------ccceEEeccCCHHHHHHHHHHHhcCc--ccCCCccHHHHHHHHHHHcCCChhHH-HHHHhhh-
Q 042327 294 RSEEVCGFME-------AHRKFKMVCLSDNDSWDLFQQKVGKE--ILNSHPDILELAQTVARECGGLPLAL-ITIGRAM- 362 (911)
Q Consensus 294 R~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~l~~~~~~i~~~c~g~Plai-~~~~~~l- 362 (911)
........+. ....+.+++++.+|..+++..++... ....+++..+....++..+.|.|..+ ..+-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443221111 12468999999999999999887421 11122333344556677777888544 3322111
Q ss_pred ---cC---CCCHHHHHHHHHHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhccC--CCCcccCHHHHHHHHH
Q 042327 363 ---AC---KKTPEEWRYAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCSLY--PEDYCISKENLIDCWI 434 (911)
Q Consensus 363 ---~~---~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~wi 434 (911)
.. .-+.+..+.+.+.+.. ....-++..||. +.|..+..+... ..+..+...++...+-
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 11 1234444444333321 122345667887 555444332211 1333455555555221
Q ss_pred --hcCCcccCccchhhhhHHHHHHHHHHhccccc
Q 042327 435 --GEGLLNESDRFGEQNQGYFILGILLHACLLEE 466 (911)
Q Consensus 435 --aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~ 466 (911)
++.+ . -..........++..|...|+++.
T Consensus 319 ~~~~~~-~--~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 319 EVCEDI-G--VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHhc-C--CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 1111 1 012234556667777777777765
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=3.2e-11 Score=131.36 Aligned_cols=83 Identities=28% Similarity=0.205 Sum_probs=36.2
Q ss_pred CCCCccEEEccCCCCCCc----ChhHHhcCCcccEEEccCCCCcc-------cCccccCCCCCCEEeecCCCCc-ccccc
Q 042327 533 TCPHLLTLFLDNNESLKI----PNDFFQYMHSLKVLNLSRIKLKS-------FPLGISKLVSLQQLDLSYSSIK-ELPRE 600 (911)
Q Consensus 533 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~l~~L~~L~L~~~~i~-~lp~~ 600 (911)
.+.+|+.|++++|.+... ....+...+.|+.|+++++.+.. ++..+.++++|++|++++|.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 344455555555544221 01123344445555555554431 1223444555555555555444 22222
Q ss_pred ccCCcc---ccEEecccc
Q 042327 601 LYALVN---LKCLNLEHA 615 (911)
Q Consensus 601 ~~~l~~---L~~L~l~~~ 615 (911)
+..+.+ |++|++++|
T Consensus 101 ~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 101 LESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHhccCcccEEEeeCC
Confidence 222222 555555554
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=5.7e-11 Score=129.37 Aligned_cols=239 Identities=22% Similarity=0.149 Sum_probs=144.3
Q ss_pred ccccceEeecccccccc-----cC-CCCCCCCccEEEccCCCCCCcC------hhHHhcCCcccEEEccCCCCc-ccCcc
Q 042327 511 EWENVRRLSLMQNEITN-----LK-EIPTCPHLLTLFLDNNESLKIP------NDFFQYMHSLKVLNLSRIKLK-SFPLG 577 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~L~~~~i~-~lp~~ 577 (911)
.+..++.|.+.++.+.. ++ .+...++|+.|+++++.+...+ ...+..+++|+.|++++|.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 34568889999888743 22 2567788999999998765322 234667889999999999887 34445
Q ss_pred ccCCCC---CCEEeecCCCCc-----cccccccCC-ccccEEecccccccc----ccChhhhcCCccccEEEcccccccc
Q 042327 578 ISKLVS---LQQLDLSYSSIK-----ELPRELYAL-VNLKCLNLEHAEELI----TIPQQVISNFSRLHVLRMYGTVSLN 644 (911)
Q Consensus 578 i~~l~~---L~~L~L~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~~l~----~lp~~~i~~l~~L~~L~l~~~~~~~ 644 (911)
+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.... .++.. +..+++|++|++++|....
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCch
Confidence 544444 999999999887 234455666 899999999985321 23332 6677889999998874321
Q ss_pred cccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccce
Q 042327 645 FLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYR 724 (911)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~ 724 (911)
. ........+..+++|+.|+++.|.+.....-... ..+..+++|+.
T Consensus 180 ~-----------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-----------------------~~~~~~~~L~~ 225 (319)
T cd00116 180 A-----------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-----------------------ETLASLKSLEV 225 (319)
T ss_pred H-----------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-----------------------HHhcccCCCCE
Confidence 0 0122344566667888888887665432210000 12234567777
Q ss_pred EEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccc-----c-cccccCCCccEEEEecCcch
Q 042327 725 LRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKD-----L-TFLVFAPNLKYAEILNCPAM 790 (911)
Q Consensus 725 L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l-~~l~~l~~L~~L~L~~c~~l 790 (911)
|++++|. +.......... .. ....+.|++|++++| .+++ + ..+..+++|+.|++++|..-
T Consensus 226 L~ls~n~-l~~~~~~~l~~--~~--~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 226 LNLGDNN-LTDAGAAALAS--AL--LSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred EecCCCc-CchHHHHHHHH--HH--hccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 7777653 33211111100 00 001367777777777 3431 1 12444567777777775543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.1e-10 Score=111.41 Aligned_cols=141 Identities=26% Similarity=0.326 Sum_probs=55.6
Q ss_pred ccccccccCCCCCCCCccEEEccCCCCCCcChhHHh-cCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccc
Q 042327 521 MQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQ-YMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPR 599 (911)
Q Consensus 521 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~ 599 (911)
..+.|...+.+.++.+++.|+|++|.+..+.. ++ .+.+|+.|+|++|.|+.++ ++..+++|++|++++|.|+.++.
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 34455666677778889999999998877753 33 5789999999999999886 68889999999999999999976
Q ss_pred ccc-CCccccEEeccccccccccCh-hhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEE
Q 042327 600 ELY-ALVNLKCLNLEHAEELITIPQ-QVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFT 677 (911)
Q Consensus 600 ~~~-~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 677 (911)
.+. .+++|++|++++| .+..+.. ..++.+++|++|++.+|+.... ......-+..+++|+.|+-.
T Consensus 82 ~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~------------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK------------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS------------TTHHHHHHHH-TT-SEETTE
T ss_pred chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch------------hhHHHHHHHHcChhheeCCE
Confidence 664 6899999999988 4555432 2267899999999999876532 33355567778889988876
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.03 E-value=1.1e-11 Score=127.84 Aligned_cols=83 Identities=20% Similarity=0.154 Sum_probs=37.6
Q ss_pred CccEEEccCCC-CCCcC-hhHHhcCCcccEEEccCC-CCcc--cCccccCCCCCCEEeecCC-CCccc--cccccCCccc
Q 042327 536 HLLTLFLDNNE-SLKIP-NDFFQYMHSLKVLNLSRI-KLKS--FPLGISKLVSLQQLDLSYS-SIKEL--PRELYALVNL 607 (911)
Q Consensus 536 ~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~-~i~~l--p~~~~~l~~L 607 (911)
.|+.|.+.++. ...-+ ..+...+++++.|++.+| .++. +-+--..+++|++|++..| .|+.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45666666663 11111 223345566666666665 3331 1111234555666665553 44421 1112235555
Q ss_pred cEEeccccccc
Q 042327 608 KCLNLEHAEEL 618 (911)
Q Consensus 608 ~~L~l~~~~~l 618 (911)
++|+++.|..+
T Consensus 219 ~~lNlSwc~qi 229 (483)
T KOG4341|consen 219 KYLNLSWCPQI 229 (483)
T ss_pred HHhhhccCchh
Confidence 66665555433
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.01 E-value=3.8e-09 Score=113.75 Aligned_cols=264 Identities=15% Similarity=0.102 Sum_probs=149.0
Q ss_pred cccchhhHHHHHHHHHcC-----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHH
Q 042327 155 TVVGLESTLQKVWRCIVE-----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 229 (911)
+|+|++..++.+..++.. .....+.++|++|+|||+||+.+++.. . ..+ ..+..+.......+ ...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~l-~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGDL-AAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchhH-HHHHH
Confidence 589999999999888862 345668899999999999999999987 2 222 12222111112222 22223
Q ss_pred HcCCCC----CcccccCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHhhhc--c
Q 042327 230 QMGFFD----DSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGFM--E 303 (911)
Q Consensus 230 ~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~~~--~ 303 (911)
.++... |+....+ ......+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+...+ .
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~----~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP----PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC----CeEEEEecCCccccCHHHHhh
Confidence 332111 1001111 1223445666666677777777654443331 122 245566677765443221 1
Q ss_pred ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhc------CC--CCHHHHHHHH
Q 042327 304 AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMA------CK--KTPEEWRYAI 375 (911)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~------~~--~~~~~w~~~~ 375 (911)
....+++++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..+...+. .. -+.+..+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~--- 223 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL--- 223 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH---
Confidence 2346789999999999999988764332222 35667899999999977655544221 00 0111111
Q ss_pred HHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhh-hhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhhHHHH
Q 042327 376 QLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLL-YCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQGYFI 454 (911)
Q Consensus 376 ~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~~ 454 (911)
.....+...|..+++ +-+..+. ....++.+ .++.+.+.... ..........
T Consensus 224 ---------------~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l-----------g~~~~~~~~~ 275 (305)
T TIGR00635 224 ---------------KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL-----------GEDADTIEDV 275 (305)
T ss_pred ---------------HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh-----------CCCcchHHHh
Confidence 122224566788887 5555555 44556433 45544443322 1223445555
Q ss_pred HH-HHHHhcccccc
Q 042327 455 LG-ILLHACLLEEG 467 (911)
Q Consensus 455 l~-~L~~~~ll~~~ 467 (911)
+. .|+++++++..
T Consensus 276 ~e~~Li~~~li~~~ 289 (305)
T TIGR00635 276 YEPYLLQIGFLQRT 289 (305)
T ss_pred hhHHHHHcCCcccC
Confidence 67 59999999754
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.98 E-value=6.2e-09 Score=112.71 Aligned_cols=272 Identities=14% Similarity=0.094 Sum_probs=147.7
Q ss_pred CcccchhhHHHHHHHHHcC-----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE-----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIA 228 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 228 (911)
+.|+|++..++.+..++.. .....+.|+|++|+||||+|+.+++.. . ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHH
Confidence 4589999999988776642 345678899999999999999999987 2 222 1222211 11122223333
Q ss_pred HHcCCCC----CcccccCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHhhhcc-
Q 042327 229 KQMGFFD----DSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGFME- 303 (911)
Q Consensus 229 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~~~~- 303 (911)
..+.... |+....+ ....+.+...+.+.+..+|+|+..+...+. ..++ +.+-|..||+...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~----~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP----PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC----CceEEeecCCcccCCHHHHH
Confidence 3332111 0000000 112233445555566666666653322211 1111 2344556666544332221
Q ss_pred -ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHHHHHHHHHhhcc
Q 042327 304 -AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYAIQLLSSSA 382 (911)
Q Consensus 304 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 382 (911)
....+++++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..+...+. .|.... ...
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~- 236 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDG- 236 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCC-
Confidence 2346899999999999999988765432222 35688999999999975555544221 221110 000
Q ss_pred cCCC-CCCCcccchhhhccCCCCchhhhhHhh-hhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhhHHHHHH-HHH
Q 042327 383 SQFP-GFGEGVYPLLKFSYDSLPNDTIRSCLL-YCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQGYFILG-ILL 459 (911)
Q Consensus 383 ~~~~-~~~~~v~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~-~L~ 459 (911)
... ..-......+...|..|++ ..+..+. ....|+.+ .+..+.+.... ....+..+..+. .|+
T Consensus 237 -~I~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~~~~~~~~~e~~Li 302 (328)
T PRK00080 237 -VITKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEERDTIEDVYEPYLI 302 (328)
T ss_pred -CCCHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCCcchHHHHhhHHHH
Confidence 000 0001223445667778887 4555554 66667655 46655554322 122234444455 789
Q ss_pred Hhcccccc
Q 042327 460 HACLLEEG 467 (911)
Q Consensus 460 ~~~ll~~~ 467 (911)
+.+|++..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99998764
No 36
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=8e-09 Score=100.38 Aligned_cols=143 Identities=19% Similarity=0.262 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CceEEEEEeCCccCHH---HHHHHHHHHcCCCCCcccccCHHHHHH
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNT----FDCVIWVVVSKDLRVE---YIQEVIAKQMGFFDDSWRAKSVEEKAL 248 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 248 (911)
+++.|+|.+|+||||+++.++.+... ... +...+|+......... .+...|..+..... ........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHHHHH
Confidence 57899999999999999999988732 222 4567777766654432 44555544443211 11111111
Q ss_pred HHHHHccCCcEEEEEcccccccc---------ccc-ccccCCCCCCCCcEEEEEcCchhH---hhhccccceEEeccCCH
Q 042327 249 EIFNSLSEKKFVLLLDDVWERVD---------LTK-VGVPLPRPKNMASKVVFTTRSEEV---CGFMEAHRKFKMVCLSD 315 (911)
Q Consensus 249 ~l~~~l~~k~~LlVlDdv~~~~~---------~~~-~~~~~~~~~~~~s~iivTtR~~~v---~~~~~~~~~~~l~~L~~ 315 (911)
.+ .-+.+++++|+|++++... +.. +...+......+.+++||+|.... .........+.+.+|++
T Consensus 75 ~~--~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 75 EL--LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HH--HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 11 1257899999999975432 111 112222123468999999998765 33344456899999999
Q ss_pred HHHHHHHHHHh
Q 042327 316 NDSWDLFQQKV 326 (911)
Q Consensus 316 ~e~~~Lf~~~~ 326 (911)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1.6e-10 Score=123.64 Aligned_cols=166 Identities=27% Similarity=0.326 Sum_probs=98.7
Q ss_pred ceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCC
Q 042327 515 VRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSS 593 (911)
Q Consensus 515 l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 593 (911)
....+++.|.+..+|. ...|..|..+.+..|.+..+|.. ++.+..|.+|+|+.|+++.+|..++.|+ |+.|-+++|+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 3445566666665544 45566666666666666666655 5556667777777777766666666543 6666777777
Q ss_pred CccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCce
Q 042327 594 IKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEV 673 (911)
Q Consensus 594 i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 673 (911)
++.+|..++.+..|.+||.+.| .+..+|.. ++++.+|+.|.+..|... ..+.++..|+ |..
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~----------------~lp~El~~Lp-Li~ 215 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE----------------DLPEELCSLP-LIR 215 (722)
T ss_pred cccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh----------------hCCHHHhCCc-eee
Confidence 7777776666666777777666 45666665 666677776666655322 2344454333 556
Q ss_pred EEEEEcchhhHHHHHhhccccccceeeEecc
Q 042327 674 LTFTLRSVRALQLILISHKLRSCTQALFLQS 704 (911)
Q Consensus 674 L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~ 704 (911)
|+++.|++..++.-+ ..++.|+.|-|.+
T Consensus 216 lDfScNkis~iPv~f---r~m~~Lq~l~Len 243 (722)
T KOG0532|consen 216 LDFSCNKISYLPVDF---RKMRHLQVLQLEN 243 (722)
T ss_pred eecccCceeecchhh---hhhhhheeeeecc
Confidence 666666655544211 1234455555544
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.83 E-value=1.5e-10 Score=119.51 Aligned_cols=284 Identities=17% Similarity=0.168 Sum_probs=133.7
Q ss_pred cceEeecccccccccCC----CCCCCCccEEEccCCC-CCCcC-hhHHhcCCcccEEEccCC-CCccc--CccccCCCCC
Q 042327 514 NVRRLSLMQNEITNLKE----IPTCPHLLTLFLDNNE-SLKIP-NDFFQYMHSLKVLNLSRI-KLKSF--PLGISKLVSL 584 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~L~~~-~i~~l--p~~i~~l~~L 584 (911)
.++.|++.++.-....+ ...|+++..|.+.+|. +++.. .++-..++.|++|+|..| .++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46666776654333222 2567777777777773 33221 223356777888888775 55532 2223457778
Q ss_pred CEEeecCC-CCcc--ccccccCCccccEEeccccccccccChhhhc----CCccccEEEcccccccccccccccccccCC
Q 042327 585 QQLDLSYS-SIKE--LPRELYALVNLKCLNLEHAEELITIPQQVIS----NFSRLHVLRMYGTVSLNFLESLKDSILFGG 657 (911)
Q Consensus 585 ~~L~L~~~-~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 657 (911)
+||++++| .|+. +-.-...+.+|+.+.+.||. ..+.+++. .+.-+-.+++..|...
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~l-------------- 281 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQL-------------- 281 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccc--------------
Confidence 88888776 4442 11112233444455444542 22222111 1111222222222110
Q ss_pred chhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChh-cccccceEEEcccCCccce
Q 042327 658 EEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLA-DLKHLYRLRVFGCRKLEEL 736 (911)
Q Consensus 658 ~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l 736 (911)
++ ..+......+..++.+..++|...++..+..++ +.++|+.|.+.+|.++...
T Consensus 282 ------------------------TD-~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 282 ------------------------TD-EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred ------------------------cc-hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 00 111111122334444444455544444333332 3456666666666655543
Q ss_pred eeccccccccCCCCCccCcccEEEeecccccccc--cc-cccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCccc
Q 042327 737 KMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDL--TF-LVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFA 813 (911)
Q Consensus 737 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 813 (911)
.....+. +.+.|+.+++.+|....+- -. -.++|.|+.|.|+.|..+++... . .+.....+..
T Consensus 337 ~ft~l~r--------n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi----~---~l~~~~c~~~ 401 (483)
T KOG4341|consen 337 GFTMLGR--------NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI----R---HLSSSSCSLE 401 (483)
T ss_pred hhhhhhc--------CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh----h---hhhhcccccc
Confidence 3333222 4566666666666444432 11 23456666666666666554310 0 0111234455
Q ss_pred ccceeccCCCCccCccCC-CCCCCCCccEEeeCCCCCCCCCC
Q 042327 814 KLHYLGLVNLPNLRSIYW-KPLSLPQLKEMKVDGCFGLKKLP 854 (911)
Q Consensus 814 ~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~l~~C~~L~~lP 854 (911)
.|+.+.|++||.+.+-.. ....+++|+.+++.+|...++=|
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 566666666665544322 12345566666666665555433
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=2.7e-08 Score=101.42 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=95.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
..+.+.|+|+.|+|||+|++.+++... .....+.|+++.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 446789999999999999999999872 223345677653210 0000 11112
Q ss_pred ccCCcEEEEEcccccc---ccccc-ccccCCCCCCCCcEEEE-EcCc---------hhHhhhccccceEEeccCCHHHHH
Q 042327 254 LSEKKFVLLLDDVWER---VDLTK-VGVPLPRPKNMASKVVF-TTRS---------EEVCGFMEAHRKFKMVCLSDNDSW 319 (911)
Q Consensus 254 l~~k~~LlVlDdv~~~---~~~~~-~~~~~~~~~~~~s~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~ 319 (911)
+. +.-+|||||+|.. .+|.. +...+......|..+|| |++. +++.+.+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999863 33442 22222211223555554 4543 355566666778999999999999
Q ss_pred HHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHh
Q 042327 320 DLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGR 360 (911)
Q Consensus 320 ~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~ 360 (911)
+++.+.+.......+ +++..-|++.+.|..-++..+-.
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 999998864432222 35678899999887766655443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=7.2e-10 Score=118.72 Aligned_cols=175 Identities=25% Similarity=0.289 Sum_probs=121.0
Q ss_pred cccccceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEe
Q 042327 510 REWENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLD 588 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 588 (911)
..+-.|..+.+..|.+..+|. +.++..|.+|+++.|++..+|..+ + .--|++|-+++|+++.+|..++.+.+|..||
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C-~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-C-DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-h-cCcceeEEEecCccccCCcccccchhHHHhh
Confidence 344566667777777766654 677778888888888887777763 3 2347888888888888888888778888888
Q ss_pred ecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCC
Q 042327 589 LSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGL 668 (911)
Q Consensus 589 L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 668 (911)
.+.|.+..+|..++.+.+|+.|+++.| ++..+|.+ +..| .|..|+++.|... ..+-.+..|
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis----------------~iPv~fr~m 233 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKIS----------------YLPVDFRKM 233 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCcee----------------ecchhhhhh
Confidence 888888888888888888888888877 66777776 5533 4777887766432 245567777
Q ss_pred CCCceEEEEEcchhhHHHHHhhccccccceeeEeccc
Q 042327 669 ESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSF 705 (911)
Q Consensus 669 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~ 705 (911)
++|++|.+..|.+.+-++-.-......-.+.|+..-|
T Consensus 234 ~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8888888887777665443322222333445555555
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.6e-09 Score=112.68 Aligned_cols=209 Identities=19% Similarity=0.178 Sum_probs=122.2
Q ss_pred CCCCCccEEEccCCCCCCcCh-hHHhcCCcccEEEccCCCCc---ccCccccCCCCCCEEeecCCCCccccccc--cCCc
Q 042327 532 PTCPHLLTLFLDNNESLKIPN-DFFQYMHSLKVLNLSRIKLK---SFPLGISKLVSLQQLDLSYSSIKELPREL--YALV 605 (911)
Q Consensus 532 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~i~~lp~~~--~~l~ 605 (911)
.++++|+.+.|.++.+...+. +....|++++.|||+.|-+. .+-.-...|++|+.|+|+.|.+.....+. ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567889999999987766653 45778999999999998555 33445677899999999998777443322 2477
Q ss_pred cccEEeccccccc-cccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhH
Q 042327 606 NLKCLNLEHAEEL-ITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRAL 684 (911)
Q Consensus 606 ~L~~L~l~~~~~l-~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 684 (911)
+|+.|.|++|... ..+. ..+..+++|+.|++..|....+ ......-+..|+.|+++.|.+...
T Consensus 198 ~lK~L~l~~CGls~k~V~-~~~~~fPsl~~L~L~~N~~~~~---------------~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQ-WILLTFPSLEVLYLEANEIILI---------------KATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred hhheEEeccCCCCHHHHH-HHHHhCCcHHHhhhhcccccce---------------ecchhhhhhHHhhccccCCccccc
Confidence 8888888888421 1111 2245678888888887632110 011112234455666665544332
Q ss_pred HHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeecc
Q 042327 685 QLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVC 764 (911)
Q Consensus 685 ~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c 764 (911)
+ .......++.|+.|+++.|. +.++..-... ...-...|++|++|++..|
T Consensus 262 ~--------------------------~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~---s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 262 D--------------------------QGYKVGTLPGLNQLNLSSTG-IASIAEPDVE---SLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred c--------------------------cccccccccchhhhhccccC-cchhcCCCcc---chhhhcccccceeeecccC
Confidence 2 22334455666666665542 3322111100 0000116788888888877
Q ss_pred ccccccc---ccccCCCccEEEEecC
Q 042327 765 LTLKDLT---FLVFAPNLKYAEILNC 787 (911)
Q Consensus 765 ~~l~~l~---~l~~l~~L~~L~L~~c 787 (911)
.+.+++ .+..+++|+.|.+..+
T Consensus 312 -~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 312 -NIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred -ccccccccchhhccchhhhhhcccc
Confidence 344443 3445667777765543
No 42
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.72 E-value=2.6e-07 Score=104.88 Aligned_cols=288 Identities=17% Similarity=0.149 Sum_probs=180.0
Q ss_pred ccchhhHHHHHHHHHcCC-CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHHHHHcCC
Q 042327 156 VVGLESTLQKVWRCIVED-PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVIAKQMGF 233 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~ 233 (911)
.|-|. ++++.|... +.+.+.|..++|.|||||+....... ..-..+.|.+.... .++..+..-++..++.
T Consensus 21 ~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~~ 92 (894)
T COG2909 21 YVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQQ 92 (894)
T ss_pred ccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHHH
Confidence 45554 455556553 78999999999999999999988743 33457899998774 4677777777777762
Q ss_pred CCCc-----------ccccCHHHHHHHHHHHcc--CCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchhH
Q 042327 234 FDDS-----------WRAKSVEEKALEIFNSLS--EKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEEV 298 (911)
Q Consensus 234 ~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~v 298 (911)
..+. ....+...+...+...+. .++..+||||..-. .....-...+......+-.+|||||+..-
T Consensus 93 ~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 93 ATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred hCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 2211 122334445555555443 46899999998532 22222111221134467889999998753
Q ss_pred h---hhccccceEE----eccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHH
Q 042327 299 C---GFMEAHRKFK----MVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEW 371 (911)
Q Consensus 299 ~---~~~~~~~~~~----l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w 371 (911)
. +..-....++ .=.++.+|+-++|....+..- -+.-.+.+.+...|=+-|+..++=.++++.+.+.-
T Consensus 173 l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~ 246 (894)
T COG2909 173 LGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQS 246 (894)
T ss_pred CcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH
Confidence 2 2111112222 235788999999987654322 12346788899999999998888777743343322
Q ss_pred HHHHHHHhhcccCCCCCCCccc-chhhhccCCCCchhhhhHhhhhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhh
Q 042327 372 RYAIQLLSSSASQFPGFGEGVY-PLLKFSYDSLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQ 450 (911)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~~~v~-~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~ 450 (911)
-..++ +..+-+. -...=-++.||+ .+|..++-||+++.=. +.|+.. ...++.
T Consensus 247 ~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f~----~eL~~~------------Ltg~~n 299 (894)
T COG2909 247 LRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRFN----DELCNA------------LTGEEN 299 (894)
T ss_pred hhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHhh----HHHHHH------------HhcCCc
Confidence 21111 0000010 111224678999 7999999999986411 222221 234566
Q ss_pred HHHHHHHHHHhcccccc---CCCeeecchhHHHHHHH
Q 042327 451 GYFILGILLHACLLEEG---GDGEVKMHDVIRDMSLW 484 (911)
Q Consensus 451 ~~~~l~~L~~~~ll~~~---~~~~~~mhdlv~~~a~~ 484 (911)
+...+++|.+++++-.. ....|+.|.+..++-+.
T Consensus 300 g~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~ 336 (894)
T COG2909 300 GQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQ 336 (894)
T ss_pred HHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHh
Confidence 77789999999987643 67899999999998764
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.3e-09 Score=111.53 Aligned_cols=160 Identities=20% Similarity=0.216 Sum_probs=111.1
Q ss_pred ccccceEeecccccccccC---CCCCCCCccEEEccCCCCCCcC--hhHHhcCCcccEEEccCCCCcccCcc--ccCCCC
Q 042327 511 EWENVRRLSLMQNEITNLK---EIPTCPHLLTLFLDNNESLKIP--NDFFQYMHSLKVLNLSRIKLKSFPLG--ISKLVS 583 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~i~~lp~~--i~~l~~ 583 (911)
++++|+.++|.++.+...+ -...|++++.|+|+.|-+..+. ..+...+++|+.|+|+.|.+....++ -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4568888888888777654 3578999999999998544332 34567899999999999977643222 236789
Q ss_pred CCEEeecCCCCc--cccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhH
Q 042327 584 LQQLDLSYSSIK--ELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVL 661 (911)
Q Consensus 584 L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 661 (911)
|+.|.|+.|+++ .+-..+..+++|+.|+|.+|..+..-... ..-+..|++|++++|..... ..
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~--------------~~ 263 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF--------------DQ 263 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc--------------cc
Confidence 999999999888 44444556889999999998432222211 35677899999998755422 22
Q ss_pred HHhhcCCCCCceEEEEEcchhhHH
Q 042327 662 AEELLGLESLEVLTFTLRSVRALQ 685 (911)
Q Consensus 662 ~~~l~~l~~L~~L~l~~~~~~~l~ 685 (911)
....+.++.|+.|.++.+++.++.
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~ 287 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIA 287 (505)
T ss_pred ccccccccchhhhhccccCcchhc
Confidence 334566777888877766665543
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=7.9e-09 Score=102.00 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=82.2
Q ss_pred CcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcc
Q 042327 559 HSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMY 638 (911)
Q Consensus 559 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 638 (911)
+.|..||||+|.|+.+..++.-++.++.|++++|+|..+.. +..|++|++|||++| .+..+... -.+|.|.++|.+.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gw-h~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGW-HLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhh-HhhhcCEeeeehh
Confidence 46788888888888888888888888888888888887764 777888888998888 45555432 4577888888888
Q ss_pred cccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHH
Q 042327 639 GTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLI 687 (911)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l 687 (911)
+| ....+..+..+-+|..|++..|+++.++..
T Consensus 361 ~N-----------------~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 361 QN-----------------KIETLSGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred hh-----------------hHhhhhhhHhhhhheeccccccchhhHHHh
Confidence 76 223445566667778888888887776654
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=1.5e-08 Score=113.74 Aligned_cols=107 Identities=33% Similarity=0.492 Sum_probs=59.2
Q ss_pred CCCCCCccEEEccCCCCCCcChhHHhcCC-cccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccE
Q 042327 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMH-SLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKC 609 (911)
Q Consensus 531 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~ 609 (911)
+...+.+..|++.+|.+..+++. ...+. +|+.|++++|.+..+|..++.+++|+.|++++|+++.+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 34445556666666655555553 22232 56666666666665555555666666666666666666655555566666
Q ss_pred EeccccccccccChhhhcCCccccEEEcccc
Q 042327 610 LNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 610 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
|++++| .+..+|.. +..+..|++|.+.+|
T Consensus 191 L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred eeccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 666655 45555553 334444555555544
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.64 E-value=2.6e-07 Score=94.82 Aligned_cols=169 Identities=15% Similarity=0.144 Sum_probs=101.9
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc
Q 042327 159 LESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW 238 (911)
Q Consensus 159 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 238 (911)
.+..++.+.+++.......|.|+|..|+|||+||+.+++... ......++++++.-.+. .
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~~------~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQA------D----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHHh------H-----------
Confidence 344566777766555677899999999999999999998862 22334566655432110 0
Q ss_pred cccCHHHHHHHHHHHccCCcEEEEEccccccc---ccc-cccccCCCCCCCCcEEEEEcCchh---------Hhhhcccc
Q 042327 239 RAKSVEEKALEIFNSLSEKKFVLLLDDVWERV---DLT-KVGVPLPRPKNMASKVVFTTRSEE---------VCGFMEAH 305 (911)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~~~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~ 305 (911)
..+.+.+.+. -+|||||++... .|. .+...+......+.++|+||+... +...+...
T Consensus 82 ---------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 0111122222 389999996532 222 232222211123457899887532 12222234
Q ss_pred ceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHh
Q 042327 306 RKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGR 360 (911)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~ 360 (911)
..+++.+++.++...++...+.......+ .+..+.+++.+.|.|..+..+..
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 67899999999999999876532221222 24567778889999887766543
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3e-09 Score=105.06 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=42.0
Q ss_pred cccEEEccCCCCc--ccCccccCCCCCCEEeecCCCCc-cccccccCCccccEEeccccccccccCh-hhhcCCccccEE
Q 042327 560 SLKVLNLSRIKLK--SFPLGISKLVSLQQLDLSYSSIK-ELPRELYALVNLKCLNLEHAEELITIPQ-QVISNFSRLHVL 635 (911)
Q Consensus 560 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L 635 (911)
.|++|||++..|+ .+-.-++.|.+|+.|.|.++.+. .+-..+.+-.+|+.|++++|..++...- -++++++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666777766665 33334455566666666665554 3334444455566666665544433321 113445555555
Q ss_pred Ecccc
Q 042327 636 RMYGT 640 (911)
Q Consensus 636 ~l~~~ 640 (911)
+++.|
T Consensus 266 NlsWc 270 (419)
T KOG2120|consen 266 NLSWC 270 (419)
T ss_pred CchHh
Confidence 55544
No 48
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.61 E-value=6.3e-07 Score=102.46 Aligned_cols=208 Identities=15% Similarity=0.144 Sum_probs=123.7
Q ss_pred CCcccchhhHHHHHHHHHcC-----CCCeEEEEEcCCCCcHHHHHHHHHhhcccC--CCCCc--eEEEEEeCCccCHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIVE-----DPAVIIGIYGMGGVGKTTLLTHINNKFLEG--PNTFD--CVIWVVVSKDLRVEYI 223 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~--~~~wv~vs~~~~~~~~ 223 (911)
++.+.||++++++|...|.. ....++.|+|++|+|||+.++.|.+..... ..... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45689999999999887753 233578899999999999999998876211 11122 3677877777788889
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHHHcc---CCcEEEEEccccccc--ccccccccCCCCCCCCcEEEE--EcCch
Q 042327 224 QEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS---EKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVF--TTRSE 296 (911)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iiv--TtR~~ 296 (911)
+..|.+++...... ......+....+...+. +...+||||+|+... .-+.+...+......+++|+| +|...
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999988533211 22233445555555542 234689999996432 111111111101223455544 33322
Q ss_pred h--------HhhhccccceEEeccCCHHHHHHHHHHHhcCcc-cCCCccHHHHHHHHHHHcCCChhHHHHHHhhh
Q 042327 297 E--------VCGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEI-LNSHPDILELAQTVARECGGLPLALITIGRAM 362 (911)
Q Consensus 297 ~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l 362 (911)
+ +...++ ...+...+++.++-.+++..++.... .-.+..++-+|+.++...|-.-.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2 112222 22466799999999999999886421 12223344455555544444566766664443
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=4.2e-08 Score=76.75 Aligned_cols=60 Identities=40% Similarity=0.553 Sum_probs=41.0
Q ss_pred CCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEeecCCCC
Q 042327 535 PHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 535 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i 594 (911)
|+|++|++++|.+..+|++.|.++++|++|++++|.++.+| ..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45677777777777777766777777777777777776664 3566677777777776653
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.57 E-value=6e-07 Score=100.32 Aligned_cols=175 Identities=18% Similarity=0.147 Sum_probs=104.4
Q ss_pred CcccchhhHHHH---HHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHH
Q 042327 154 PTVVGLESTLQK---VWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 154 ~~~vGr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
+++||.+..+.. +.+++..+....+.++|++|+||||+|+.+++.. ...| +.++....-..-.+.+.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~- 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIE- 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHH-
Confidence 347888877655 7777777777788999999999999999999876 2333 222221111111111111
Q ss_pred cCCCCCcccccCHHHHHHHHHHH-ccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEE--EcCchhH---hhhc
Q 042327 231 MGFFDDSWRAKSVEEKALEIFNS-LSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVF--TTRSEEV---CGFM 302 (911)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iiv--TtR~~~v---~~~~ 302 (911)
..... ..+++.+|++|+++... ..+.+...+. .+..+++ ||.+... ....
T Consensus 83 ------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 83 ------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred ------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHh
Confidence 11111 24578899999997532 2333333222 2444444 3444321 1222
Q ss_pred cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 303 EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
+....+.+.+++.++.+.++.+.+.........--.+....|++.|+|.|..+..+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 334688999999999999999866431100001123567788999999987665544
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.9e-09 Score=103.52 Aligned_cols=135 Identities=17% Similarity=0.106 Sum_probs=79.9
Q ss_pred cceeeEecccCCCCccccC-ChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccc---cc
Q 042327 696 CTQALFLQSFNDSTSLDVS-PLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKD---LT 771 (911)
Q Consensus 696 ~l~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~---l~ 771 (911)
.+..++++.|++++...+. -+.+++.|..|+|+.|...+...-.... .--++|+.|+|+||.+--. +.
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~--------hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA--------HISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh--------hhchhhhhhhhhhhHhhhhhhHHH
Confidence 4555555556555544332 2345667777777776533322100000 0235677788887753322 22
Q ss_pred c-cccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCcc-CCCCCCCCCccEEeeCCCCC
Q 042327 772 F-LVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSI-YWKPLSLPQLKEMKVDGCFG 849 (911)
Q Consensus 772 ~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i-~~~~~~~~~L~~L~l~~C~~ 849 (911)
. ...+|+|.+|+|++|..++.-.. ..+..|+.|++|.++.|..+-.- -..+...|+|.+|++.||-.
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHHhCCceeeeccccccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 2 34678888888888877765221 14667888888888888765321 12456789999999998833
No 52
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.55 E-value=7.2e-07 Score=107.37 Aligned_cols=307 Identities=15% Similarity=0.181 Sum_probs=170.8
Q ss_pred ccchhhHHHHHHHHHcC---CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC---HHHHHHHHHH
Q 042327 156 VVGLESTLQKVWRCIVE---DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR---VEYIQEVIAK 229 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~---~~~~~~~i~~ 229 (911)
++||+.+++.+...+.. +...++.+.|..|+|||+++++|.....+.++.|-.-.+-....... ....++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999888864 56779999999999999999999998733222221111111122211 2233344444
Q ss_pred Hc-------------------CCCCCc--------------------ccccCHHHH-----HHHHHHHc-cCCcEEEEEc
Q 042327 230 QM-------------------GFFDDS--------------------WRAKSVEEK-----ALEIFNSL-SEKKFVLLLD 264 (911)
Q Consensus 230 ~l-------------------~~~~~~--------------------~~~~~~~~~-----~~~l~~~l-~~k~~LlVlD 264 (911)
++ +..... ......+.+ ...+..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 111100 000111111 11222333 3569999999
Q ss_pred cc-ccccc-cccccccCCCCC---CCCcEEE--EEcCch--hHhhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCc
Q 042327 265 DV-WERVD-LTKVGVPLPRPK---NMASKVV--FTTRSE--EVCGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHP 335 (911)
Q Consensus 265 dv-~~~~~-~~~~~~~~~~~~---~~~s~ii--vTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 335 (911)
|+ |-+.. +.-+........ -....|. .|.+.. .+-........+.+.||+..+.-.+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 53321 111111111000 0011222 222222 1122223446899999999999999999887633 2
Q ss_pred cHHHHHHHHHHHcCCChhHHHHHHhhhcCC------CCHHHHHHHHHHHhhcccCCCCCCCcccchhhhccCCCCchhhh
Q 042327 336 DILELAQTVARECGGLPLALITIGRAMACK------KTPEEWRYAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIR 409 (911)
Q Consensus 336 ~l~~~~~~i~~~c~g~Plai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k 409 (911)
...+....|+++..|+|+.+..+-..+... .+...|..-...+. ..... +.+...+..-.+.||. ..+
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~-~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATT-DAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----Cchhh-HHHHHHHHHHHhcCCH-HHH
Confidence 234578899999999999999988777652 33444443211111 11111 2345568888999998 789
Q ss_pred hHhhhhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhhHHHHHHHHHHhcccccc-------CCC---eeecchhHH
Q 042327 410 SCLLYCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQGYFILGILLHACLLEEG-------GDG---EVKMHDVIR 479 (911)
Q Consensus 410 ~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~-------~~~---~~~mhdlv~ 479 (911)
.-+-..|++-. .++.+.|...|-. .....+....+.|....++-.+ ... +-..||.|+
T Consensus 312 ~Vl~~AA~iG~--~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 312 EVLKAAACIGN--RFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHhCc--cCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 99888888754 4555556554421 2234444445555544444321 111 226788888
Q ss_pred HHHHH
Q 042327 480 DMSLW 484 (911)
Q Consensus 480 ~~a~~ 484 (911)
+.|-.
T Consensus 380 qaaY~ 384 (849)
T COG3899 380 QAAYN 384 (849)
T ss_pred HHHhc
Confidence 87743
No 53
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=1.8e-07 Score=86.04 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=81.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL 254 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (911)
.+++.|.|+.|+||||+++.++.+. . ....+++++..+....... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999887 1 3455677765554221100 000 223333444
Q ss_pred cCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHhhh------ccccceEEeccCCHHHH
Q 042327 255 SEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGF------MEAHRKFKMVCLSDNDS 318 (911)
Q Consensus 255 ~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 318 (911)
..++.+++||++....+|......+. +.....+|++|+.+...... .+....++|.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44778999999988888887766555 44457899999998765422 12335789999998774
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.2e-08 Score=100.81 Aligned_cols=131 Identities=27% Similarity=0.365 Sum_probs=99.8
Q ss_pred ccccccceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEE
Q 042327 509 VREWENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQL 587 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 587 (911)
...|+.++.++|+.|.|..+.. ..-.|++|.|+++.|.+..+.. +..+.+|..||||+|.++++-..=.+|-+.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3457788888898888887755 3456888889998888777765 677888888899888887765555567788888
Q ss_pred eecCCCCccccccccCCccccEEeccccccccccCh-hhhcCCccccEEEccccccc
Q 042327 588 DLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQ-QVISNFSRLHVLRMYGTVSL 643 (911)
Q Consensus 588 ~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 643 (911)
.|++|.|..+. ++++|.+|..||+++| .+..+.. .-|++|+-|++|.+.+|...
T Consensus 358 ~La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 88888888775 7888888888888888 4454431 11788888888888887654
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.52 E-value=4e-06 Score=95.66 Aligned_cols=180 Identities=21% Similarity=0.243 Sum_probs=109.5
Q ss_pred CcccchhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 229 (911)
++++|.++.++++.+|+.. ...+.+.|+|++|+||||+|+.++++. . |+ .+-++++...+...+ ..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~----~~-~ielnasd~r~~~~i-~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-G----WE-VIELNASDQRTADVI-ERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-C----CC-EEEEcccccccHHHH-HHHHH
Confidence 3589999999999888864 226789999999999999999999987 1 22 233444443322222 22222
Q ss_pred HcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc------cccccccCCCCCCCCcEEEEEcCchh-Hh--h
Q 042327 230 QMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD------LTKVGVPLPRPKNMASKVVFTTRSEE-VC--G 300 (911)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~s~iivTtR~~~-v~--~ 300 (911)
...... .....++-+||||+++.... +..+...+. ..+..||+|+.+.. .. .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccchhh
Confidence 211100 01113678999999975322 233322222 23345666664432 11 1
Q ss_pred hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhh
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAM 362 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l 362 (911)
.......+.+.+++.++....+.+.+.......+ .+....|++.++|..-.+......+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1223467899999999999998887754432232 3567889999999776554433333
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=7.8e-08 Score=107.86 Aligned_cols=157 Identities=29% Similarity=0.393 Sum_probs=123.1
Q ss_pred ccccccceEeecccccccccCCCCCCC--CccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCE
Q 042327 509 VREWENVRRLSLMQNEITNLKEIPTCP--HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQ 586 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 586 (911)
....+.+..|.+.+|.+..++...... +|+.|++++|.+..+|.. +..++.|+.|++++|+++.+|...+.+..|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 344467899999999999987765553 899999999999888644 67899999999999999999988878999999
Q ss_pred EeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhc
Q 042327 587 LDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELL 666 (911)
Q Consensus 587 L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 666 (911)
|++++|+++.+|..+..+..|+.|.+++|. ...++.. +.++.++..|.+.++.... .+..++
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~~----------------~~~~~~ 252 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLED----------------LPESIG 252 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceeee----------------ccchhc
Confidence 999999999999887778889999999984 3344443 7888888888877653221 134456
Q ss_pred CCCCCceEEEEEcchhhH
Q 042327 667 GLESLEVLTFTLRSVRAL 684 (911)
Q Consensus 667 ~l~~L~~L~l~~~~~~~l 684 (911)
.+..|+.|+++.|.+..+
T Consensus 253 ~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 253 NLSNLETLDLSNNQISSI 270 (394)
T ss_pred cccccceecccccccccc
Confidence 667777777776655443
No 57
>PRK08727 hypothetical protein; Validated
Probab=98.48 E-value=1.7e-06 Score=88.48 Aligned_cols=166 Identities=11% Similarity=0.077 Sum_probs=96.5
Q ss_pred cchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 042327 157 VGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDD 236 (911)
Q Consensus 157 vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 236 (911)
+|-......+.....+.....+.|+|..|+|||+|++.+++... .....++++++.+ ....+.
T Consensus 23 ~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~-------- 85 (233)
T PRK08727 23 AAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR-------- 85 (233)
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH--------
Confidence 33333334333333333445799999999999999999998862 2233556765432 111111
Q ss_pred cccccCHHHHHHHHHHHccCCcEEEEEccccccc---cccc-ccccCCCCCCCCcEEEEEcCchh---------Hhhhcc
Q 042327 237 SWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV---DLTK-VGVPLPRPKNMASKVVFTTRSEE---------VCGFME 303 (911)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~-~~~~~~~~~~~~s~iivTtR~~~---------v~~~~~ 303 (911)
...+.+ .+.-+||+||+.... .|.. +...+......|..||+|++... +.+.+.
T Consensus 86 ------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~ 152 (233)
T PRK08727 86 ------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLA 152 (233)
T ss_pred ------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHh
Confidence 011111 122489999996432 2322 11111101124667999998542 223334
Q ss_pred ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 304 AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
....+++++++.++-.+++.+++.......+ ++....|++.+.|..-.+
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 4568999999999999999987754332222 356778888888766554
No 58
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.47 E-value=3.2e-05 Score=90.15 Aligned_cols=202 Identities=15% Similarity=0.037 Sum_probs=117.3
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC---ceEEEEEeCCc---cCHHHHHHH-
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF---DCVIWVVVSKD---LRVEYIQEV- 226 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~vs~~---~~~~~~~~~- 226 (911)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 3589999999998888876666789999999999999999998775 222222 12334444321 122222111
Q ss_pred --------------HHHHcCCCC----------------CcccccCHHHHHHHHHHHccCCcEEEEEcccccc--ccccc
Q 042327 227 --------------IAKQMGFFD----------------DSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTK 274 (911)
Q Consensus 227 --------------i~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~ 274 (911)
.+...+... ++.... ....+..+.+.++++++.++-|+.|.. ..|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 112212110 000111 223567788888888888887766543 34666
Q ss_pred ccccCCCCCCCCcEEEE--EcCchhH-hhh-ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCC
Q 042327 275 VGVPLPRPKNMASKVVF--TTRSEEV-CGF-MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGG 350 (911)
Q Consensus 275 ~~~~~~~~~~~~s~iiv--TtR~~~v-~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g 350 (911)
+...+. ...+...|++ ||++... ... .+....+.+.+++.+|.+.++.+.+.......+ .++...|.+.+..
T Consensus 312 ik~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~ 387 (615)
T TIGR02903 312 IKKLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIE 387 (615)
T ss_pred hhhhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCc
Confidence 665554 3344444554 5664432 111 122346788999999999999987754321111 2444555555554
Q ss_pred ChhHHHHHHhh
Q 042327 351 LPLALITIGRA 361 (911)
Q Consensus 351 ~Plai~~~~~~ 361 (911)
-+-|+..++.+
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 46666655544
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.46 E-value=2.3e-06 Score=89.33 Aligned_cols=167 Identities=20% Similarity=0.227 Sum_probs=100.4
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC-HHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR-VEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~ 232 (911)
.+++|-++.+. +.+..+.+.-...||++|+||||||+.+.... ...| ..+|...+ +.++ +++
T Consensus 30 ~HLlg~~~~lr---r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdl-r~i----- 92 (436)
T COG2256 30 EHLLGEGKPLR---RAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDL-REI----- 92 (436)
T ss_pred HhhhCCCchHH---HHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHH-HHH-----
Confidence 33444444433 44556788888899999999999999999976 4444 33333222 2222 222
Q ss_pred CCCCcccccCHHHHHHHH-HHHccCCcEEEEEccccc--ccccccccccCCCCCCCCcEEEE--EcCchhH---hhhccc
Q 042327 233 FFDDSWRAKSVEEKALEI-FNSLSEKKFVLLLDDVWE--RVDLTKVGVPLPRPKNMASKVVF--TTRSEEV---CGFMEA 304 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~--~~~~~~~~~~~~~~~~~~s~iiv--TtR~~~v---~~~~~~ 304 (911)
.+.- .....+++++|++|+|.. ..+.+.+. | .-..|.-|+| ||.++.. ....+.
T Consensus 93 --------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p-~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 93 --------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL---P-HVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred --------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhh---h-hhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 2222 123348999999999953 23333332 3 3345666665 5665542 233455
Q ss_pred cceEEeccCCHHHHHHHHHHHhcCcccCC---CccH-HHHHHHHHHHcCCChhHH
Q 042327 305 HRKFKMVCLSDNDSWDLFQQKVGKEILNS---HPDI-LELAQTVARECGGLPLAL 355 (911)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~---~~~l-~~~~~~i~~~c~g~Plai 355 (911)
..++.+++|+.++-.+++.+.+......- ...+ ++....++..++|.-.+.
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 67999999999999999998442221111 1112 345667888888875543
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.44 E-value=3.5e-07 Score=93.27 Aligned_cols=92 Identities=21% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc--cCHHHHHHHHHHHcCCCCCc-cccc---CHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD--LRVEYIQEVIAKQMGFFDDS-WRAK---SVEEKA 247 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~-~~~~---~~~~~~ 247 (911)
....++|+|++|+|||||++.++++. .. .+|+.++|+.+++. .++.++++.+...+-...-+ .... -.....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999997 33 38999999998777 78999999993333211100 0000 001111
Q ss_pred HHHHHH-ccCCcEEEEEcccc
Q 042327 248 LEIFNS-LSEKKFVLLLDDVW 267 (911)
Q Consensus 248 ~~l~~~-l~~k~~LlVlDdv~ 267 (911)
.....+ -.++++++++|++.
T Consensus 93 ~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHH
Confidence 112211 25899999999994
No 61
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=5.4e-06 Score=89.20 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=113.9
Q ss_pred cccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCCceEEEEEe-CCccCHHHHHHHHHH
Q 042327 155 TVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFL---EGPNTFDCVIWVVV-SKDLRVEYIQEVIAK 229 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~ 229 (911)
.++|-+..++.+.+++..++. +.+.++|+.|+||||+|+.++.... ....|+|...|... +.....+++ +++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHH
Confidence 478999999999999987654 5678999999999999999988641 12356776666542 222233332 22333
Q ss_pred HcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccc--cccccccccccCCCCCCCCcEEEEEcCchhHh--hhcccc
Q 042327 230 QMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVW--ERVDLTKVGVPLPRPKNMASKVVFTTRSEEVC--GFMEAH 305 (911)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~--~~~~~~ 305 (911)
.+... -..+++=++|+|+++ +...+..+...+. ....++.+|++|.+.+.. +..+..
T Consensus 84 ~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 84 EVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 22211 112345566777764 4455666666665 445688888888765421 122335
Q ss_pred ceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 306 RKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
..+++.++++++....+.+..... + .+.+..++..++|.|.-+...
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~----~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI----K---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 688999999999988887654311 1 233667889999998765443
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=6.1e-06 Score=94.35 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=110.7
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+++||.+..++.|.+++..+++ +.+.++|..|+||||+|+.+.+... -...++ +..+..-...+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCC-------CCCCcccHHHHHHhcCCC
Confidence 3589999999999999987654 4667999999999999998888761 111110 001111111111111000
Q ss_pred CC---CCcccccCHHHHHHHHHH----HccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-Hh-hh
Q 042327 233 FF---DDSWRAKSVEEKALEIFN----SLSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSEE-VC-GF 301 (911)
Q Consensus 233 ~~---~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~~-v~-~~ 301 (911)
.. .+.......++....+.. -..++.-++|||+++... .+..+...+. ......++|+||++.. +. ..
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCeEEEEEECChhhccchh
Confidence 00 000001112222222111 123455688999997543 3555544443 2334677777777654 32 22
Q ss_pred ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh-hHHHHHH
Q 042327 302 MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP-LALITIG 359 (911)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P-lai~~~~ 359 (911)
.+....++++.++.++..+.+.+.+..+....+ .+....|++.++|.. -|+..+-
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 234568999999999999999988765432222 356778999999865 4555543
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-05 Score=87.20 Aligned_cols=201 Identities=17% Similarity=0.239 Sum_probs=127.3
Q ss_pred CcccchhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 229 (911)
+.+.+|+.+++++...|.. ....-+.|+|..|+|||+.++.|++.........+ +++|.+-...+...++..|++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4489999999999887753 33334899999999999999999999833222232 789999999999999999999
Q ss_pred HcCCCCCcccccCHHHHHHHHHHHcc--CCcEEEEEccccccccc--ccccccCCCCCCCCcEE--EEEcCchhHhhh--
Q 042327 230 QMGFFDDSWRAKSVEEKALEIFNSLS--EKKFVLLLDDVWERVDL--TKVGVPLPRPKNMASKV--VFTTRSEEVCGF-- 301 (911)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~~~~~~~~~~~s~i--ivTtR~~~v~~~-- 301 (911)
+++... .......+....+.+.+. ++.+++|||+++...+- +.+...+.......++| |..+-+......
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 996221 134556666777777764 57899999999653222 11111111111224444 334443333222
Q ss_pred ------ccccceEEeccCCHHHHHHHHHHHhcC---cccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 302 ------MEAHRKFKMVCLSDNDSWDLFQQKVGK---EILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 302 ------~~~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
++.. .+..++-+.+|-..++..++.. +....+..++-++...++..|-.-.||..+
T Consensus 174 ~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2222 3788999999999999988742 222222333334444444444445555554
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.38 E-value=2.2e-06 Score=81.30 Aligned_cols=124 Identities=22% Similarity=0.180 Sum_probs=74.2
Q ss_pred cchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 042327 157 VGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDD 236 (911)
Q Consensus 157 vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 236 (911)
+|++..++.+...+.....+.+.|+|.+|+||||+++.+++.. . ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788889999998877667889999999999999999999987 2 222446677665543322211111000
Q ss_pred cccccCHHHHHHHHHHHccCCcEEEEEcccccc-----cccccccccCCCC--CCCCcEEEEEcCchh
Q 042327 237 SWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER-----VDLTKVGVPLPRP--KNMASKVVFTTRSEE 297 (911)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~~~~~--~~~~s~iivTtR~~~ 297 (911)
............++.++|+||++.. ..+.......... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999743 1122221111100 135778888887643
No 65
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=7.5e-07 Score=104.67 Aligned_cols=105 Identities=24% Similarity=0.331 Sum_probs=82.2
Q ss_pred CccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc-ccCccccCCCCCCEEeecCCCCc-cccccccCCccccEEecc
Q 042327 536 HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK-SFPLGISKLVSLQQLDLSYSSIK-ELPRELYALVNLKCLNLE 613 (911)
Q Consensus 536 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~ 613 (911)
.++.|+|++|.+....+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|+++ .+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888776544445788888999999888887 67888888888999999988887 778888888889999998
Q ss_pred ccccccccChhhhcC-CccccEEEccccc
Q 042327 614 HAEELITIPQQVISN-FSRLHVLRMYGTV 641 (911)
Q Consensus 614 ~~~~l~~lp~~~i~~-l~~L~~L~l~~~~ 641 (911)
+|.....+|.. +.. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 88766678876 443 3566777777663
No 66
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.36 E-value=5.7e-06 Score=90.69 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=107.7
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCc-eEEEEEeCCccCHHHHHHHHHH---
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFD-CVIWVVVSKDLRVEYIQEVIAK--- 229 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~--- 229 (911)
+.++|++..++.+.+++..+..+.+.++|+.|+||||+|+.+.+... ...+. ..+.+++++-.+. ....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQ--GKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhc--chhhhhcCcc
Confidence 45899999999999998887767789999999999999999998862 12222 2344444331100 0000000
Q ss_pred ---HcCCCCCcccccCHHHHHHHHH----HHc--cCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-
Q 042327 230 ---QMGFFDDSWRAKSVEEKALEIF----NSL--SEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSEE- 297 (911)
Q Consensus 230 ---~l~~~~~~~~~~~~~~~~~~l~----~~l--~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~~- 297 (911)
..+.. .. .........+.+. ... .+.+-+||+||+.... ....+...+. .....+++|+||....
T Consensus 91 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhh
Confidence 00000 00 0001111112111 111 2344589999996432 1222322222 2233567887775432
Q ss_pred Hhhh-ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHH
Q 042327 298 VCGF-MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALI 356 (911)
Q Consensus 298 v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~ 356 (911)
+... .+....+.+.+++.++...++.+.+.......+ .+....+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2221 123457889999999999999887654332222 3567788888988765543
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.32 E-value=1.4e-07 Score=96.05 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=18.0
Q ss_pred ccCcccEEEeeccccccccc------c-cccCCCccEEEEecCc
Q 042327 752 VFHGLHTVHIEVCLTLKDLT------F-LVFAPNLKYAEILNCP 788 (911)
Q Consensus 752 ~l~~L~~L~L~~c~~l~~l~------~-l~~l~~L~~L~L~~c~ 788 (911)
.+++|+.|++++| .+.+=. . -...|+|+.|.+.+|.
T Consensus 239 s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 239 SWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred ccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 4555666666666 333211 1 1235666666666643
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=8.2e-06 Score=95.24 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=107.9
Q ss_pred CcccchhhHHHHHHHHHcCCCCeE-EEEEcCCCCcHHHHHHHHHhhcccCCCC-------------------CceEEEEE
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVI-IGIYGMGGVGKTTLLTHINNKFLEGPNT-------------------FDCVIWVV 213 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 213 (911)
..+||.+..++.+.+++..+++.- +.++|+.|+||||+|+.+++.... ... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 458999999999999998776654 589999999999999999988621 111 10112221
Q ss_pred eCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHH-HHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEE
Q 042327 214 VSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIF-NSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVV 290 (911)
Q Consensus 214 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~ii 290 (911)
.+....+.. ..++...+. .-..+++-++|||++... ..+..+...+. ......++|
T Consensus 95 Aas~~kVDd--------------------IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrFI 153 (944)
T PRK14949 95 AASRTKVDD--------------------TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKFL 153 (944)
T ss_pred cccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEEE
Confidence 110011111 111111111 112467779999999643 33444444443 222345555
Q ss_pred EEcCc-hhHh-hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 291 FTTRS-EEVC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 291 vTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
++|.+ ..+. ........+++++|+.++..+.+.+.+....... -.+....|++.++|.|.-+..+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 55544 4443 2233457899999999999999988764432111 2346778999999988644443
No 69
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=1.2e-06 Score=81.23 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=78.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccC--CCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEG--PNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIF 251 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (911)
+.+.+.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+++++..... ..+..++.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34689999999999999999999886210 00134577999988889999999999999876532 346777778888
Q ss_pred HHccCCcE-EEEEcccccc-c--ccccccccCCCCCCCCcEEEEEcCc
Q 042327 252 NSLSEKKF-VLLLDDVWER-V--DLTKVGVPLPRPKNMASKVVFTTRS 295 (911)
Q Consensus 252 ~~l~~k~~-LlVlDdv~~~-~--~~~~~~~~~~~~~~~~s~iivTtR~ 295 (911)
+.+...+. +||+||++.. . .++.+... . ...+.+||++.+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l-~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSL-L--NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHH-T--CSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHH-H--hCCCCeEEEEECh
Confidence 88866555 9999999653 1 12223222 1 2556677776654
No 70
>PRK09087 hypothetical protein; Validated
Probab=98.30 E-value=6.8e-06 Score=83.19 Aligned_cols=143 Identities=16% Similarity=0.109 Sum_probs=88.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
..+.+.|+|..|+|||+|++.+++.. .. .+++.. .+..++.. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~~-------~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-DA-------LLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-CC-------EEecHH------HcchHHHH-----------------------h
Confidence 34679999999999999999988765 11 133221 11111111 1
Q ss_pred ccCCcEEEEEccccccc-ccccccccCCCCCCCCcEEEEEcCch---------hHhhhccccceEEeccCCHHHHHHHHH
Q 042327 254 LSEKKFVLLLDDVWERV-DLTKVGVPLPRPKNMASKVVFTTRSE---------EVCGFMEAHRKFKMVCLSDNDSWDLFQ 323 (911)
Q Consensus 254 l~~k~~LlVlDdv~~~~-~~~~~~~~~~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 323 (911)
+.+ -+|++||+.... +-..+...+......|..||+|++.. +..+.+.....+++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889995321 11112211211123467799998742 334455667899999999999999999
Q ss_pred HHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 324 QKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
+++.......+ +++..-|++.+.|..-++..+
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 98865432222 356778888888877666543
No 71
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.30 E-value=5.3e-06 Score=84.94 Aligned_cols=173 Identities=12% Similarity=0.077 Sum_probs=101.6
Q ss_pred Ccccchhh-HHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLES-TLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~-~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++|... ....+.++........+.|+|+.|+|||+|++.+++... ..-..+.++++.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-------------
Confidence 34556333 333444444444557899999999999999999998862 2223456666543100
Q ss_pred CCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc---ccccccc-ccCCCCCCCC-cEEEEEcCchh---------H
Q 042327 233 FFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER---VDLTKVG-VPLPRPKNMA-SKVVFTTRSEE---------V 298 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~-~~~~~~~~~~-s~iivTtR~~~---------v 298 (911)
...+..+ .+.. --+|++||+... ..|+... ..+......| .++|+||+... .
T Consensus 87 ---------~~~~~~~----~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVPEVLE----GMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhHHHHH----Hhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0011111 1111 137899999542 3343221 1111011123 47999997553 3
Q ss_pred hhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 299 CGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 299 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
.+.+....+++++++++++-.+++.+++.......+ +++..-|++.+.|..-++..+-
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 444556679999999999999999886654322222 3677788888887765554443
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.30 E-value=1.5e-05 Score=86.64 Aligned_cols=178 Identities=11% Similarity=0.101 Sum_probs=104.1
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEe--CCccCHHHHHHHHHHHc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVV--SKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l 231 (911)
++++|++..++.+..++.....+.+.++|..|+||||+|+.+.+... ...+. ..++.+ +.......+...+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHHHHHHHHHHH
Confidence 34899999999999999877777789999999999999999998862 12221 122222 22222111111111110
Q ss_pred CCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-Hhh-hccccce
Q 042327 232 GFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSEE-VCG-FMEAHRK 307 (911)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~~-v~~-~~~~~~~ 307 (911)
... ......+-++++|+++... ....+...+. .....+++|+++.... +.. .......
T Consensus 94 ~~~-----------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 94 RTA-----------------PVGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred hcC-----------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 000 0001235689999986432 2223333332 2233466777664322 211 1122346
Q ss_pred EEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 308 FKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 308 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
+++.++++++....+.+.+.......+ .+....+++.++|.+.-+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 899999999999998887754432222 346778899999987654
No 73
>PRK05642 DNA replication initiation factor; Validated
Probab=98.28 E-value=7.1e-06 Score=83.87 Aligned_cols=153 Identities=17% Similarity=0.233 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL 254 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (911)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999998762 1224567776432 1110 01122223
Q ss_pred cCCcEEEEEcccccc---ccccc-ccccCCCCCCCCcEEEEEcCchhH---------hhhccccceEEeccCCHHHHHHH
Q 042327 255 SEKKFVLLLDDVWER---VDLTK-VGVPLPRPKNMASKVVFTTRSEEV---------CGFMEAHRKFKMVCLSDNDSWDL 321 (911)
Q Consensus 255 ~~k~~LlVlDdv~~~---~~~~~-~~~~~~~~~~~~s~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~L 321 (911)
.+-. +||+||+... ..|.. +...+......|..+|+|++...- .+.+.....+++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 6789999532 34433 222222112346778998875432 23334456789999999999999
Q ss_pred HHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHh
Q 042327 322 FQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGR 360 (911)
Q Consensus 322 f~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~ 360 (911)
+.+++.......+ +++..-|++.+.|..-++..+-.
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 9976643322222 36778888888887665554443
No 74
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2e-05 Score=86.50 Aligned_cols=190 Identities=18% Similarity=0.187 Sum_probs=106.1
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|.+..++.+.+.+..++. +.+.++|+.|+||||+|+.+++... -..... ..++..-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4589999999999998887654 5678999999999999999988761 110000 000000011111111100
Q ss_pred CCC---CcccccCHHHHHHHHHHHc-----cCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCch-hHhhh
Q 042327 233 FFD---DSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSE-EVCGF 301 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~-~v~~~ 301 (911)
... +.......++ .+.+.+.+ .+++-++|+|+++... .+..+...+. ......++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEcCChHhhhHH
Confidence 000 0000011121 11222221 2455699999997543 3444444443 233456677766543 33222
Q ss_pred -ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHH
Q 042327 302 -MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALI 356 (911)
Q Consensus 302 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~ 356 (911)
.+....+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.|..+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 223468899999999999988886644321111 2456788999999886443
No 75
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=2.3e-07 Score=94.48 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=107.8
Q ss_pred cccccceEeecccccccc-----c-CCCCCCCCccEEEccCCC----CCCcChh------HHhcCCcccEEEccCCCCc-
Q 042327 510 REWENVRRLSLMQNEITN-----L-KEIPTCPHLLTLFLDNNE----SLKIPND------FFQYMHSLKVLNLSRIKLK- 572 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~----~~~~~~~------~~~~l~~L~~L~L~~~~i~- 572 (911)
.....+..|.|++|.+.. + +.+.+.+.|+..++++-- ...+|+. .+.++++|++|+||+|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344578889999987743 1 235566788888888752 2233332 2345678999999999654
Q ss_pred ccC----ccccCCCCCCEEeecCCCCccc--------------cccccCCccccEEeccccccccccCh----hhhcCCc
Q 042327 573 SFP----LGISKLVSLQQLDLSYSSIKEL--------------PRELYALVNLKCLNLEHAEELITIPQ----QVISNFS 630 (911)
Q Consensus 573 ~lp----~~i~~l~~L~~L~L~~~~i~~l--------------p~~~~~l~~L~~L~l~~~~~l~~lp~----~~i~~l~ 630 (911)
.-+ .-+..+..|+.|.|.+|++... -.-+.+-++|+++...+| .+..-+. .++...+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhcc
Confidence 222 2356688899999999877522 122445678888888877 5555543 2256677
Q ss_pred cccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHH
Q 042327 631 RLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQL 686 (911)
Q Consensus 631 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 686 (911)
.|+.+.+..|.+.. .| .......+..+++|+.|++..|.++.-..
T Consensus 186 ~leevr~~qN~I~~----------eG-~~al~eal~~~~~LevLdl~DNtft~egs 230 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRP----------EG-VTALAEALEHCPHLEVLDLRDNTFTLEGS 230 (382)
T ss_pred ccceEEEecccccC----------ch-hHHHHHHHHhCCcceeeecccchhhhHHH
Confidence 88888888764331 11 23456778888999999988877655443
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.1e-05 Score=91.14 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=109.0
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCC-C-CCceEEEEEeCCccCHHHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGP-N-TFDCVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~-~F~~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
+++||-+..++.+.+++..++. +.+.++|..|+||||+|+.+.+...-.. . ... . .+..+..-...+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~----~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I----TAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C----CCCCCcccHHHHHHHcC
Confidence 3589999999999999988765 4568999999999999999988762100 0 000 0 00000101111111100
Q ss_pred c-----CCCCCcccccCHHHHHHHHHHH----ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEE-EEEcCchhH
Q 042327 231 M-----GFFDDSWRAKSVEEKALEIFNS----LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKV-VFTTRSEEV 298 (911)
Q Consensus 231 l-----~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~i-ivTtR~~~v 298 (911)
- .+.. ......++..+.+... ..++.-++|||+++.. ..+..+...+. .-..+.++ ++||....+
T Consensus 91 ~hpDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v~FILaTtep~kL 167 (700)
T PRK12323 91 RFVDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHVKFILATTDPQKI 167 (700)
T ss_pred CCCcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCceEEEEeCChHhh
Confidence 0 0000 0011222222222111 2456679999999643 33455544444 22234454 455554554
Q ss_pred h-hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 299 C-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 299 ~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
. ...+....+.++.++.++..+.+.+.+..+....+ .+..+.|++.++|.|.-...+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3 22334578999999999999999887654332221 245678899999998755444
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.4e-05 Score=90.52 Aligned_cols=192 Identities=15% Similarity=0.085 Sum_probs=108.8
Q ss_pred CcccchhhHHHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|.+..++.+.+++..++ .+.+.++|+.|+||||+|+.+++... -.. ++.. ..++.-...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~------~~~~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CET------GVTS-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCc------CCCC-CCCccCHHHHHHhcCCC
Confidence 358999999999999998765 45779999999999999999988761 100 0000 00111111111111000
Q ss_pred CCC---CcccccCHHHHHHHHH----HHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchh-Hh-hh
Q 042327 233 FFD---DSWRAKSVEEKALEIF----NSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEE-VC-GF 301 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~----~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~-v~-~~ 301 (911)
... +.......++..+.+. .-..+++-++|+|+++.. .....+...+. ....+.++|++|.+.. +. ..
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCCCCcEEEEEECChHhhhHHH
Confidence 000 0000111222221111 112356678999999643 23444444443 2234567777766532 22 22
Q ss_pred ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHH
Q 042327 302 MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALIT 357 (911)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~ 357 (911)
.+....+++++++.++....+.+.+..+....+ .+....|++.++|.+..+..
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 244578999999999999999887755432222 34567899999998755443
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=98.27 E-value=1e-05 Score=87.32 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=104.7
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCc-eEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFD-CVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|.+..++.+..++..+..+.+.++|++|+||||+|+.+++... ...|. .++-+..+....... .+++++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDV-VRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHH-HHHHHHHHH
Confidence 34789988888888888777777788999999999999999998861 12222 122222232222221 111111110
Q ss_pred CCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCch-hHhh-hccccceE
Q 042327 233 FFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSE-EVCG-FMEAHRKF 308 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~-~v~~-~~~~~~~~ 308 (911)
.... ..-.++.-++++|+++... ....+...+. .....+++|+++... .+.. ..+....+
T Consensus 90 ~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhcc
Confidence 0000 0002356689999996532 2222222222 223456777766543 2211 11224578
Q ss_pred EeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 309 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
+++++++++....+.+.+..+....+ .+....|++.++|..-.+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999999999999888755432222 345778899999876433
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=3.2e-08 Score=108.98 Aligned_cols=102 Identities=27% Similarity=0.380 Sum_probs=61.9
Q ss_pred CccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEEecccc
Q 042327 536 HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHA 615 (911)
Q Consensus 536 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~ 615 (911)
.|.+.+.++|.+..+..+ ++-++.|+.|+|+.|+++.+- .+..|++|++|||++|.++.+|.--..-..|+.|++++|
T Consensus 165 ~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 344445555554444333 555667777777777776654 566677777777777777766642111123777777766
Q ss_pred ccccccChhhhcCCccccEEEcccccc
Q 042327 616 EELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 616 ~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
.++.+-. +.+|.+|+.|+++.|-.
T Consensus 243 -~l~tL~g--ie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 243 -ALTTLRG--IENLKSLYGLDLSYNLL 266 (1096)
T ss_pred -HHHhhhh--HHhhhhhhccchhHhhh
Confidence 4555554 66777777777776643
No 80
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=6.5e-07 Score=69.99 Aligned_cols=59 Identities=36% Similarity=0.509 Sum_probs=54.5
Q ss_pred ccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCC
Q 042327 513 ENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 571 (911)
++++.|++.+|.+..++. |..+++|++|++++|.+..++++.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999999999864 78999999999999999999999999999999999999965
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.25 E-value=1.5e-05 Score=81.44 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=102.8
Q ss_pred HHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHH
Q 042327 166 VWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEE 245 (911)
Q Consensus 166 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (911)
+...+..+.+..+.+||++|+||||||+.+.+.. +.+- ..||..|....-..-.+.|.++-..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 3445566888999999999999999999999886 2221 5677777654443334444443221
Q ss_pred HHHHHHHHccCCcEEEEEccccc--ccccccccccCCCCCCCCcEEEE--EcCchhH---hhhccccceEEeccCCHHHH
Q 042327 246 KALEIFNSLSEKKFVLLLDDVWE--RVDLTKVGVPLPRPKNMASKVVF--TTRSEEV---CGFMEAHRKFKMVCLSDNDS 318 (911)
Q Consensus 246 ~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~~~~~~~~~s~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~e~ 318 (911)
...+.++|.+|.+|+|.. ..+.+.+ +| .-.+|.-++| ||.++.. +..+....++.+++|+.++-
T Consensus 216 -----~~~l~krkTilFiDEiHRFNksQQD~f---LP-~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 216 -----EKSLTKRKTILFIDEIHRFNKSQQDTF---LP-HVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred -----HHhhhcceeEEEeHHhhhhhhhhhhcc---cc-eeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 124567899999999953 2333322 33 3345655544 6776643 34455668999999999999
Q ss_pred HHHHHHHhc---Cccc----CCCc---cHHHHHHHHHHHcCCChh
Q 042327 319 WDLFQQKVG---KEIL----NSHP---DILELAQTVARECGGLPL 353 (911)
Q Consensus 319 ~~Lf~~~~~---~~~~----~~~~---~l~~~~~~i~~~c~g~Pl 353 (911)
..++.+... .... .+.+ --..+..-++..|+|...
T Consensus 287 ~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 287 VTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 999988442 1111 1111 123466777888888754
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=7.6e-08 Score=108.04 Aligned_cols=124 Identities=30% Similarity=0.402 Sum_probs=79.6
Q ss_pred ccceEeeccccccccc-CCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecC
Q 042327 513 ENVRRLSLMQNEITNL-KEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSY 591 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 591 (911)
..+..+++..|.+... ..+..+.+|..|++.+|.+..+... +..+.+|++|++++|.|+.+. ++..+..|+.|++++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheecc
Confidence 4455555666666652 3366677777777777776666543 455777777777777777664 556666677777777
Q ss_pred CCCccccccccCCccccEEeccccccccccCh-hhhcCCccccEEEccccc
Q 042327 592 SSIKELPRELYALVNLKCLNLEHAEELITIPQ-QVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 592 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 641 (911)
|.|+.++ .+..+++|+.+++++| .+..++. . ...+.+|+.+.+.+|.
T Consensus 150 N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 150 NLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred Ccchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 7777665 3445777777777777 3444544 1 2566677777776653
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.3e-06 Score=100.63 Aligned_cols=109 Identities=25% Similarity=0.322 Sum_probs=91.8
Q ss_pred cceEeeccccccccc-C-CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc-ccCccccCCCCCCEEeec
Q 042327 514 NVRRLSLMQNEITNL-K-EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK-SFPLGISKLVSLQQLDLS 590 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~ 590 (911)
.++.|+|.+|.+.+. | .+..+++|+.|+|++|.+....+..+..+++|++|+|++|.++ .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 478899999988753 3 3788999999999999987444445899999999999999998 789999999999999999
Q ss_pred CCCCc-cccccccCC-ccccEEeccccccccccC
Q 042327 591 YSSIK-ELPRELYAL-VNLKCLNLEHAEELITIP 622 (911)
Q Consensus 591 ~~~i~-~lp~~~~~l-~~L~~L~l~~~~~l~~lp 622 (911)
+|.++ .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99998 889888763 577889999886555444
No 84
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.6e-05 Score=88.32 Aligned_cols=196 Identities=17% Similarity=0.092 Sum_probs=110.4
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|-+..++.+..++..+.. +.+.++|+.|+||||+|+.+++.. .-.+.+...+|.|.+... +..-.+.....+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 3589999999999998887655 456999999999999999998886 211222223333321100 0000000000000
Q ss_pred CCCCcccccCHHHHHHHHHHH-----ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcC-chhHhhh-cc
Q 042327 233 FFDDSWRAKSVEEKALEIFNS-----LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTR-SEEVCGF-ME 303 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR-~~~v~~~-~~ 303 (911)
.. .....+. ++.+.+. ..+++-++|+|+++.. ..+..+...+. .......+|++|. ...+... .+
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChHHhc
Confidence 00 0111111 1122222 2346668999999743 23445544443 2223445555554 3333222 23
Q ss_pred ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH-HHHHh
Q 042327 304 AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL-ITIGR 360 (911)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai-~~~~~ 360 (911)
....+++.+++.++....+.+.+.......+ .+....|++.++|.+--+ ..+-.
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3568999999999999999988754432221 356788999999988544 34333
No 85
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.20 E-value=1.6e-05 Score=77.69 Aligned_cols=175 Identities=16% Similarity=0.153 Sum_probs=90.6
Q ss_pred CcccchhhHHHHHHHHHc-----CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIV-----EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIA 228 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 228 (911)
++|||.++.++.+.-.+. .+...-+.+||++|+||||||..++++. ...|. +++...-...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~-------- 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKA-------- 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SC--------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhH--------
Confidence 458999888877543332 2457788999999999999999999997 34442 2222110011
Q ss_pred HHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cc-------cccccc--cCCCCC---------CCCcE
Q 042327 229 KQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VD-------LTKVGV--PLPRPK---------NMASK 288 (911)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-------~~~~~~--~~~~~~---------~~~s~ 288 (911)
.+++..+ ..+ +++.+|.+|++... .. .+.... ...... .+=+-
T Consensus 90 ---------------~dl~~il-~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 ---------------GDLAAIL-TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp ---------------HHHHHHH-HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ---------------HHHHHHH-Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 1111111 112 23457777888531 00 111000 000000 01233
Q ss_pred EEEEcCchhHhhhccc--cceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhh
Q 042327 289 VVFTTRSEEVCGFMEA--HRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAM 362 (911)
Q Consensus 289 iivTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l 362 (911)
|=-|||...+..-+.. .-..+++..+.+|-.++..+.+..-.. +--++.+.+|+++|.|-|--..-+-+.+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4467777555443333 234589999999999999887654321 2235678999999999997665554433
No 86
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=2.9e-06 Score=89.95 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=65.7
Q ss_pred HHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc--CHHHHHHHHHHHcCCCCCccccc
Q 042327 165 KVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL--RVEYIQEVIAKQMGFFDDSWRAK 241 (911)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~ 241 (911)
++++.+.. +.-...+|+|++|+||||||+.||+.. . ..+|+.++||.+++.. .+.++++.|...+-... .+..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCC
Confidence 34444433 345678899999999999999999998 3 2389999999999887 77888888864322111 1111
Q ss_pred CHHHH-----HHHHHHH--ccCCcEEEEEcccc
Q 042327 242 SVEEK-----ALEIFNS--LSEKKFVLLLDDVW 267 (911)
Q Consensus 242 ~~~~~-----~~~l~~~--l~~k~~LlVlDdv~ 267 (911)
..... +-...+. -.+++++|++|++.
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11111 1111122 36799999999994
No 87
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.19 E-value=2.9e-06 Score=84.01 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=32.5
Q ss_pred ccchhhHHHHHHHHHc---CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 156 VVGLESTLQKVWRCIV---EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
||||+++++++...+. ....+.+.|+|.+|+|||+|++.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 3467899999999999999999999988
No 88
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=9e-07 Score=87.86 Aligned_cols=34 Identities=9% Similarity=-0.066 Sum_probs=22.1
Q ss_pred ccCcccEEEeecccccccccc-------cccCCCccEEEEe
Q 042327 752 VFHGLHTVHIEVCLTLKDLTF-------LVFAPNLKYAEIL 785 (911)
Q Consensus 752 ~l~~L~~L~L~~c~~l~~l~~-------l~~l~~L~~L~L~ 785 (911)
.|+.|+.|.+.+++.+..+.. ++.+++++.|+=+
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 577777777777766655432 4567777776544
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.9e-05 Score=88.00 Aligned_cols=182 Identities=20% Similarity=0.146 Sum_probs=106.8
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCceEEEEEe
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGP------------------NTFDCVIWVVV 214 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~v 214 (911)
++++|.+..++.+...+..++. +.+.++|+.|+||||+|+.+++...... ..|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 3589999999999999987655 4578999999999999999988651100 01112222222
Q ss_pred CCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH-HccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEE-
Q 042327 215 SKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN-SLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVV- 290 (911)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~ii- 290 (911)
.....+++ ..++...+.. -..+++-++|+||++.. ..+..+...+. .......+|
T Consensus 96 as~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fIL 154 (546)
T PRK14957 96 ASRTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFIL 154 (546)
T ss_pred ccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEEE
Confidence 11111111 1112222211 12356679999999643 23444444444 223345555
Q ss_pred EEcCchhHh-hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHHHH
Q 042327 291 FTTRSEEVC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALITIG 359 (911)
Q Consensus 291 vTtR~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~~~ 359 (911)
+||....+. ...+....+++++++.++....+.+.+....... -.+....|++.++|.+- |+..+-
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455444443 2233457899999999999888887654332111 13456788999999664 444443
No 90
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=4.2e-05 Score=86.20 Aligned_cols=192 Identities=17% Similarity=0.111 Sum_probs=107.3
Q ss_pred cccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCce-EEEEEeCCccCHHHHHHHHHHHcC
Q 042327 155 TVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDC-VIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+++|-+..+..+...+..++. +.+.++|+.|+||||+|+.+++... -...... --+..+. .-.-...|.....
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~----~C~~C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCE----QCTNCISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCC----CChHHHHHhcCCC
Confidence 479999999988887777654 5788999999999999999988761 1110000 0000000 0000111111000
Q ss_pred CCC---CcccccCHHHHHHHHHH----HccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEE-EcCchhHhhhc
Q 042327 233 FFD---DSWRAKSVEEKALEIFN----SLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVF-TTRSEEVCGFM 302 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iiv-TtR~~~v~~~~ 302 (911)
... +.......++....+.. -+.+++-++|+|+++.. ..+..+...+. .....+.+|+ ||+...+...+
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEEEEeCChHHhhHHH
Confidence 000 00011122222222111 13456779999999753 34555554444 2334555554 55555554322
Q ss_pred -cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 303 -EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 303 -~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
.....+++++++.++....+.+.+..+....+ .+....|++.++|.+.-+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 33467899999999999999988865432222 245677899999977544
No 91
>PTZ00202 tuzin; Provisional
Probab=98.16 E-value=2e-05 Score=83.92 Aligned_cols=163 Identities=16% Similarity=0.090 Sum_probs=97.4
Q ss_pred CCcccchhhHHHHHHHHHcC---CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIVE---DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 229 (911)
...|+||+.+..++...|.+ +..+++.|+|++|+|||||++.+.... . ..+++.-.. +..++++.|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~------~~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G------MPAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C------ceEEEECCC--CHHHHHHHHHH
Confidence 46799999999999988864 234699999999999999999999775 1 123333333 67999999999
Q ss_pred HcCCCCCcccccCHHHHHHHHHHHc-c-CCcEEEEEcccccccccccc---cccCCCCCCCCcEEEEEcCchhHhhh---
Q 042327 230 QMGFFDDSWRAKSVEEKALEIFNSL-S-EKKFVLLLDDVWERVDLTKV---GVPLPRPKNMASKVVFTTRSEEVCGF--- 301 (911)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~~~~~---~~~~~~~~~~~s~iivTtR~~~v~~~--- 301 (911)
+|+.........-...+.+.+.+.- . +++.+||+-= .+-.++..+ ...+. ....-|.|++----+.....
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la-~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALA-CDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHH-ccchhheeeeeehHhhcchhccc
Confidence 9997432111111223333333322 3 6677777621 111111111 01122 23345666654433332111
Q ss_pred ccccceEEeccCCHHHHHHHHHHHh
Q 042327 302 MEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
+..-..|.+++++.++|........
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhhcc
Confidence 1223578899999999988876643
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.16 E-value=2e-05 Score=92.73 Aligned_cols=168 Identities=21% Similarity=0.217 Sum_probs=95.9
Q ss_pred cccchhhHHH---HHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHc
Q 042327 155 TVVGLESTLQ---KVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 155 ~~vGr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 231 (911)
+++|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|.. +..+. ....+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~---lna~~-~~i~d--------- 92 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSS---LNAVL-AGVKD--------- 92 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCccee---ehhhh-hhhHH---------
Confidence 4789887764 45666777777788999999999999999999876 334421 11110 00110
Q ss_pred CCCCCcccccCHHHHHHHHHHHc--cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEE--cCchh--Hh-hhc
Q 042327 232 GFFDDSWRAKSVEEKALEIFNSL--SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFT--TRSEE--VC-GFM 302 (911)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivT--tR~~~--v~-~~~ 302 (911)
..+......+.+ .+++.+|||||++.. ..++.+...+ ..|+.++++ |.+.. +. ...
T Consensus 93 -----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 93 -----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred -----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----cCceEEEEEecCCChHhhhhhHhh
Confidence 111111111111 246789999999643 2333333222 235555553 44432 21 112
Q ss_pred cccceEEeccCCHHHHHHHHHHHhcCcc----cCCCccHHHHHHHHHHHcCCChh
Q 042327 303 EAHRKFKMVCLSDNDSWDLFQQKVGKEI----LNSHPDILELAQTVARECGGLPL 353 (911)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~----~~~~~~l~~~~~~i~~~c~g~Pl 353 (911)
+....+.+++++.++...++.+.+.... .....--.+....|++.+.|.--
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 2345789999999999999988764110 00001123456778888888644
No 93
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=1.9e-05 Score=87.01 Aligned_cols=190 Identities=13% Similarity=0.035 Sum_probs=107.3
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|.+..+..+..++..++.. .+.++|+.|+||||+|+.+++... ...... ...+.....- ..|.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~--~~pCg~C~sC----~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIG--NEPCNECTSC----LEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccC--ccccCCCcHH----HHHHccCC
Confidence 35899999999999999887654 589999999999999999988761 111100 0001111111 11111111
Q ss_pred CCCCcc---cccCHH---HHHHHHHH-HccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEE-EEcCchhHh-hh
Q 042327 233 FFDDSW---RAKSVE---EKALEIFN-SLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVV-FTTRSEEVC-GF 301 (911)
Q Consensus 233 ~~~~~~---~~~~~~---~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~ii-vTtR~~~v~-~~ 301 (911)
...... .....+ ++...+.. ...++.-++|+|+++.. ..+..+...+. .......+| .||....+. ..
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHH
Confidence 000000 011111 22222221 12456679999999643 34555544443 222344444 444444442 22
Q ss_pred ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 302 MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
.+....|.+++++.++..+.+.+.+..+....+ .+....|++.++|.+.-+
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHH
Confidence 333467999999999999988887654432222 356788999999988543
No 94
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.8e-05 Score=85.39 Aligned_cols=185 Identities=18% Similarity=0.184 Sum_probs=104.9
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCC-C-----------------CceEEEEEe
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPN-T-----------------FDCVIWVVV 214 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------F~~~~wv~v 214 (911)
++++|.+...+.+...+..+.. +.+.++|++|+||||+|+.+++....... . +..+..+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 4589999888888888887766 56889999999999999999887511000 0 001122222
Q ss_pred CCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEE
Q 042327 215 SKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFT 292 (911)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivT 292 (911)
+.......+ +.|.+.... .-..+++-++|+|+++.. ...+.+...+. .......+|++
T Consensus 94 a~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~Ila 153 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFVLA 153 (472)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEEEE
Confidence 111111111 111111110 012345679999999643 22333433333 22223444444
Q ss_pred cCc-hhHhhh-ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCC-ChhHHHHHHhh
Q 042327 293 TRS-EEVCGF-MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGG-LPLALITIGRA 361 (911)
Q Consensus 293 tR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g-~Plai~~~~~~ 361 (911)
|.+ ..+... ......+++.+++.++....+.+.+......-+ .+....|++.++| .+.|+..+-.+
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 443 333222 233468899999999999998887744321222 3456778887865 46666666543
No 95
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=5.8e-05 Score=82.63 Aligned_cols=187 Identities=11% Similarity=0.008 Sum_probs=102.4
Q ss_pred CcccchhhHHHHHHHHHcCCC----------CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDP----------AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYI 223 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 223 (911)
+.++|-+..++.+.+++..+. .+-+.++|+.|+||||+|+.++....- ...- + ..++.-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c-~~~~----~----~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC-TDPD----E----PGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-CCCC----C----CCCCCCHH
Confidence 358999999999999987653 466889999999999999998776411 0000 0 00000000
Q ss_pred HHHHHHHcCCC----CCcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEE
Q 042327 224 QEVIAKQMGFF----DDSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFT 292 (911)
Q Consensus 224 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivT 292 (911)
-+.+...-... .........++.. .+.+.+ .+++-++|+|+++.. .....+...+. ....+..+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE-ep~~~~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE-EPPPRTVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh-cCCCCCeEEEE
Confidence 00010000000 0000011122211 222222 345568888999643 22233333333 22335556665
Q ss_pred cCch-hHhhh-ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 293 TRSE-EVCGF-MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 293 tR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
|.+. .+... .+....+.+.+++.++....+.+..+. + .+.+..+++.++|.|.....+.
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 5554 33322 233568999999999999888754321 1 2456788999999997655443
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=2.1e-05 Score=79.42 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=93.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL 254 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (911)
...+.|+|..|+|||.|++++++...+ ...-..+++++ ..++...+...+.. ... ..+.+.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~-------~~~----~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRD-------GEI----EEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHT-------TSH----HHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHc-------ccc----hhhhhhh
Confidence 457899999999999999999998722 11222455664 34455555554432 111 2233344
Q ss_pred cCCcEEEEEccccccc---cccc-ccccCCCCCCCCcEEEEEcCchh---------HhhhccccceEEeccCCHHHHHHH
Q 042327 255 SEKKFVLLLDDVWERV---DLTK-VGVPLPRPKNMASKVVFTTRSEE---------VCGFMEAHRKFKMVCLSDNDSWDL 321 (911)
Q Consensus 255 ~~k~~LlVlDdv~~~~---~~~~-~~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 321 (911)
++ -=+|++||++... .|.+ +...+......|.+||+|++... ..+.+...-.+++++.+.++-..+
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 43 3378999996432 2222 11111111234678999996542 234455667899999999999999
Q ss_pred HHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 322 FQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 322 f~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
+.+++....... -++++.-|++.+.+..-.+..+
T Consensus 175 l~~~a~~~~~~l---~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 175 LQKKAKERGIEL---PEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHhCCCC---cHHHHHHHHHhhcCCHHHHHHH
Confidence 999886544222 2456777888777665554443
No 97
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=2.9e-05 Score=89.34 Aligned_cols=193 Identities=16% Similarity=0.088 Sum_probs=107.7
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+++||-+..++.+.+.+..++.. .+.++|..|+||||+|+.+++.... ...+. ...+..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 35899999999999999877654 4689999999999999999887621 00000 001111112222211100
Q ss_pred CCC---CcccccCHHHH---HHHHHH-HccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhHh-hh
Q 042327 233 FFD---DSWRAKSVEEK---ALEIFN-SLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRS-EEVC-GF 301 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~---~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~-~~v~-~~ 301 (911)
... +.......++. ...+.. -..+++-++|||+++.. .....+...+. ......++|++|.+ ..+. ..
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccchHH
Confidence 000 00000112222 111111 12466779999999643 33444444433 22234555554444 4443 22
Q ss_pred ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 302 MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
.+....+++++++.++....+.+.+..+.... -.+....|++.++|.+--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 33357899999999999999988764332111 1345678999999988644443
No 98
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=3.9e-05 Score=87.83 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=105.1
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHH--
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQ-- 230 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-- 230 (911)
++++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+... -..... +. .+......+.|...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~----pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GE----PCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CC----CCcccHHHHHHhccCc
Confidence 3589999999999999987764 4689999999999999999888651 110000 00 00000000000000
Q ss_pred ---cCCCCCcccccCHHHHHHHHHH----HccCCcEEEEEcccccccc--cccccccCCCCCCCCcEEEEEcCch-hHh-
Q 042327 231 ---MGFFDDSWRAKSVEEKALEIFN----SLSEKKFVLLLDDVWERVD--LTKVGVPLPRPKNMASKVVFTTRSE-EVC- 299 (911)
Q Consensus 231 ---l~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~s~iivTtR~~-~v~- 299 (911)
+.+.. ......+.+...+.. -..+++-++|||++..... ...+...+. ......++|++|.+. .+.
T Consensus 88 ~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcEEEEEeCCccccch
Confidence 00000 001112222111111 1235667899999964321 333333332 222345666666543 222
Q ss_pred hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 300 GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 300 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
...+....+++++++.++....+.+.+.......+ .+....|++.++|.+.-+..+
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHHH
Confidence 11233457888999999999999887755432221 346788999999988544433
No 99
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=4.3e-06 Score=59.68 Aligned_cols=39 Identities=31% Similarity=0.534 Sum_probs=22.7
Q ss_pred cccEEEccCCCCcccCccccCCCCCCEEeecCCCCcccc
Q 042327 560 SLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELP 598 (911)
Q Consensus 560 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp 598 (911)
+|++|++++|+|+.+|..+++|++|++|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655666666666666666665554
No 100
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.07 E-value=0.00013 Score=80.50 Aligned_cols=181 Identities=16% Similarity=0.174 Sum_probs=106.4
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccC-C------------------CCCceEEEEE
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEG-P------------------NTFDCVIWVV 213 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~F~~~~wv~ 213 (911)
..++|.+..++.+.+++..++. +.+.++|+.|+||||+|+.+....... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 3579999999999999987654 467899999999999999988775210 0 02222 2222
Q ss_pred eCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEE
Q 042327 214 VSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVF 291 (911)
Q Consensus 214 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iiv 291 (911)
.+...... -.+++...+.. .-..+++-++|+|+++.. .....+...+. .....+.+|+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~------------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKY------------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVFIL 152 (355)
T ss_pred ccccCCHH-HHHHHHHHHhc------------------CcccCCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeEEE
Confidence 21111111 11122221110 002244558899998543 22334433333 2234566667
Q ss_pred EcCchh-Hhh-hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 292 TTRSEE-VCG-FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 292 TtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
+|.+.. +.. .......+++.++++++....+...+.......+ .+.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 765543 222 2223457888999999999998887654331122 356778899999988655444
No 101
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.05 E-value=2.6e-05 Score=85.91 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=98.5
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++.|++..++++.+.+.. ...+.|.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4589999999999887642 124568999999999999999999987 3333 22211
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccccc----------------ccccccccCCC-C
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERV----------------DLTKVGVPLPR-P 282 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~~~~-~ 282 (911)
..+.... .+ ........+.+.. ...+.+|+|||++... .+..+...+.. .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0111222222222 3467899999996421 01111111110 1
Q ss_pred CCCCcEEEEEcCchhHh-----hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh
Q 042327 283 KNMASKVVFTTRSEEVC-----GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 283 ~~~~s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
...+.+||.||...... ........+.+...+.++..++|...+.......... ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 23467788888765321 1112345789999999999999998775443222222 345667777653
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.05 E-value=2.6e-05 Score=79.93 Aligned_cols=170 Identities=13% Similarity=0.093 Sum_probs=95.0
Q ss_pred ccchhhHH-HHHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 156 VVGLESTL-QKVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 156 ~vGr~~~~-~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
+.|..... ..+.++... .....+.|+|..|+|||+||+.+++.... .. ....+++...... .+
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~~------~~------ 85 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPLL------AF------ 85 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhHH------HH------
Confidence 33554433 333343332 34567899999999999999999987621 11 2344554332110 00
Q ss_pred CCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccccc--cccccCCCCCCCCc-EEEEEcCchhHhh--------hc
Q 042327 234 FDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLT--KVGVPLPRPKNMAS-KVVFTTRSEEVCG--------FM 302 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~~~~~~~~~~~s-~iivTtR~~~v~~--------~~ 302 (911)
... ...-+||+||+.....+. .+...+......+. .||+|++...... .+
T Consensus 86 ------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 86 ------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred ------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 011 123478899996432221 22222210112333 4677776543221 22
Q ss_pred cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhh
Q 042327 303 EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAM 362 (911)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l 362 (911)
.....+++.++++++-..++.+.+.......+ ++....+++.+.|.+..+..+...+
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 23468899999998877777765433221222 3567778888999998887766544
No 103
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=9.2e-06 Score=88.11 Aligned_cols=197 Identities=15% Similarity=0.043 Sum_probs=108.7
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCC-CCCc-eEEEEEeCCccCHHHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGP-NTFD-CVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
..++|.+..++.+.+.+..++.. .+.++|+.|+||+|+|..+.+...-.. ...+ +..-.............+.|...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 45899999999999999887654 588999999999999998877652100 0000 00000000000000111111111
Q ss_pred cCCC--------CCcc----cccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEE
Q 042327 231 MGFF--------DDSW----RAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVF 291 (911)
Q Consensus 231 l~~~--------~~~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iiv 291 (911)
-..+ .+.. ..-..++ ++.+.+.+ .+++-++|+||++.. .....+...+. ....++.+|+
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE-epp~~~~~IL 176 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE-EPPARSLFLL 176 (365)
T ss_pred CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh-cCCCCeEEEE
Confidence 0000 0000 0112233 33344443 256679999999643 22333433333 2234556666
Q ss_pred EcCchh-Hh-hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 292 TTRSEE-VC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 292 TtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
+|.+.. +. ...+....+.+.+++.++..+++.+...... .+....+++.++|.|.....+.
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 666553 32 2223456899999999999999987643211 1122678999999998765554
No 104
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.04 E-value=1.7e-05 Score=84.86 Aligned_cols=93 Identities=19% Similarity=0.091 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc--cCHHHHHHHHHHHcCCCCCcccccCHHHHHH--
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD--LRVEYIQEVIAKQMGFFDDSWRAKSVEEKAL-- 248 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-- 248 (911)
+.-..++|+|++|+|||||++.+++.. . ..+|+..+||.+.+. .++.++++.|...+-...-+.........+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 355789999999999999999999997 3 348999999999876 7899999999554422211001111011111
Q ss_pred --HHHHH-ccCCcEEEEEcccc
Q 042327 249 --EIFNS-LSEKKFVLLLDDVW 267 (911)
Q Consensus 249 --~l~~~-l~~k~~LlVlDdv~ 267 (911)
..... -++++++|++|++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChh
Confidence 11111 36899999999994
No 105
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=4.5e-05 Score=82.37 Aligned_cols=197 Identities=15% Similarity=0.087 Sum_probs=110.4
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCceEEEEEeCCccCHHHHHHHHHHHc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGP-NTFDCVIWVVVSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l 231 (911)
..++|-+...+.+...+..++. ..+.|+|..|+||||+|+.+.+...... ..+... .....+......+.|...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 4589999999999999987764 4688999999999999999888762100 001111 0011111112233333221
Q ss_pred C-------CCCCcc-----cccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEE
Q 042327 232 G-------FFDDSW-----RAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFT 292 (911)
Q Consensus 232 ~-------~~~~~~-----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivT 292 (911)
. ...+.. .....++. +.+.+++ .+++-++|+|+++.. .....+...+........-|++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0 000000 11123332 3444444 356679999999643 22333333333112223334555
Q ss_pred cCchhHhh-hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 293 TRSEEVCG-FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 293 tR~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
++...+.. ..+....+++.+++.++..+++.+...... --.+....+++.++|.|.....+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44433322 222346899999999999999987432211 112446788999999998766554
No 106
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=8.9e-05 Score=85.26 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=107.6
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCceEEEEEeCCccCHHHHHHHHHHHc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGP-NTFDCVIWVVVSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l 231 (911)
+++||-+..++.+.+++..++. +.+.++|..|+||||+|+.+.+...-.. ........ ..++.-...+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 3589999989999999988765 5678999999999999999877651000 00000000 0111111112221100
Q ss_pred CCC---CCcccccCHHHHHHHHHHH-----ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEc-CchhHh-
Q 042327 232 GFF---DDSWRAKSVEEKALEIFNS-----LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTT-RSEEVC- 299 (911)
Q Consensus 232 ~~~---~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTt-R~~~v~- 299 (911)
... .+.......++..+.+ +. ..++.-++|||+++.. ..+..+...+. ......++|++| ....+.
T Consensus 92 h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhhhH
Confidence 000 0000111222222221 21 1244558899999753 33444444443 223345565555 434432
Q ss_pred hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 300 GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 300 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
...+....+++++++.++....+.+.+.......+ .+....|++.++|.+.-+..+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 23344578999999999999999887754432222 345678889999977554443
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=7.4e-05 Score=84.90 Aligned_cols=180 Identities=15% Similarity=0.138 Sum_probs=104.7
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCCCC-------------------CceEEEEE
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGPNT-------------------FDCVIWVV 213 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 213 (911)
+++||-+..++.+.+++..++.. .+.++|+.|+||||+|+.+.+... -... |.-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 35899999999999999877654 578999999999999999888761 1111 11122222
Q ss_pred eCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEE
Q 042327 214 VSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVF 291 (911)
Q Consensus 214 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iiv 291 (911)
.+....++++ +++++.+.. .-..++.-++|+|+++.. .....+...+. .....+++|+
T Consensus 95 aas~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEEE
Confidence 2211112211 112211110 011356668999999643 33444433433 2223566666
Q ss_pred EcCc-hhHh-hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHH
Q 042327 292 TTRS-EEVC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALIT 357 (911)
Q Consensus 292 TtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~ 357 (911)
+|.+ ..+. ...+....+++++++.++....+.+.+........ .+....|++.++|.+.-+..
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHH
Confidence 5543 3332 22233467899999999988877776644332211 23466788999998754433
No 108
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00011 Score=82.24 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=106.4
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhccc---CC---------------CCCceEEEEEe
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLE---GP---------------NTFDCVIWVVV 214 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---~~---------------~~F~~~~wv~v 214 (911)
+++||.+..++.+.+.+..++.. .+.++|+.|+||||+|+.++....- .. ..+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 35899999999888888877665 7899999999999999998774300 00 01111233333
Q ss_pred CCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEE
Q 042327 215 SKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFT 292 (911)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivT 292 (911)
+....++++ ++|.+.... .-..+++-++|+|++... .....+...+. ......++|++
T Consensus 93 as~~~vddI-R~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fIla 152 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFILA 152 (491)
T ss_pred ccCCCHHHH-HHHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEEEE
Confidence 222222221 111111110 011345668999999643 23444444443 22345666655
Q ss_pred cC-chhHhh-hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 293 TR-SEEVCG-FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 293 tR-~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
|. ...+.. ..+....+.+++++.++....+.+.+..+....+ .+....|++.++|.+..+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 53 344432 2334568899999999999999988765432222 345678999999877543
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=4.6e-05 Score=86.42 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=105.6
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
..++|.+..++.+.+++..++. +.+.++|+.|+||||+|+.+++... ... |... ..++.-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~--C~~-----~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN--CLN-----PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCC-----CCCC-CCCcccHHHHHHHcCCC
Confidence 3589999999999999877654 4688999999999999999988761 111 1110 01111111111111110
Q ss_pred CCC---CcccccCHHHH---HHHHHHH-ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEc-CchhHh-hh
Q 042327 233 FFD---DSWRAKSVEEK---ALEIFNS-LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTT-RSEEVC-GF 301 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTt-R~~~v~-~~ 301 (911)
... +.......++. ...+... ..+++-++|+|+++.. ..+..+...+. .......+|++| ....+. ..
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEECCChHhhhHHH
Confidence 000 00000111211 1111110 1233447999999643 33444444333 222345555544 433443 22
Q ss_pred ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHHHHh
Q 042327 302 MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALITIGR 360 (911)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~~~~ 360 (911)
.+....+++.++++++....+.+.+.......+ .+.+..+++.++|.+. |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 334568899999999999988887644321122 2456788999999664 4444433
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.01 E-value=0.00016 Score=71.58 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=90.9
Q ss_pred HHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCceEEEEEeC-CccCHHHH
Q 042327 165 KVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGP-------------------NTFDCVIWVVVS-KDLRVEYI 223 (911)
Q Consensus 165 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~vs-~~~~~~~~ 223 (911)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+...... .+.|. .++... .....+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 45556656555 6789999999999999999888762110 11122 111111 1111111
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCch-hHhh
Q 042327 224 QEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSE-EVCG 300 (911)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~-~v~~ 300 (911)
.+++.+.+... -..+.+-++|+||++.. ..++.+...+. .....+.+|++|++. .+..
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhChH
Confidence 11111211100 01345668999999643 23444444444 333456677666654 2222
Q ss_pred -hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh
Q 042327 301 -FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL 353 (911)
Q Consensus 301 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl 353 (911)
.......+++.+++.++..+.+.+. + . + .+.+..|++.++|.|.
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i---~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G--I---S---EEAAELLLALAGGSPG 186 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C--C---C---HHHHHHHHHHcCCCcc
Confidence 1223468899999999998888876 1 1 1 2568899999999885
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=7.1e-05 Score=83.15 Aligned_cols=196 Identities=13% Similarity=0.088 Sum_probs=107.6
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEE-eCCccCHHHHHHHHHHHc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVV-VSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l 231 (911)
++++|.+..++.+.+++..+++. .+.++|+.|+||||+|+.+++... -....+...|.. +..++..-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 35899999999999998877664 488999999999999999988762 111111111110 001111111111111111
Q ss_pred CCCC---CcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEc-CchhHhh
Q 042327 232 GFFD---DSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTT-RSEEVCG 300 (911)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTt-R~~~v~~ 300 (911)
.... +.......++..+ +.+.+ .+++-++|+|++... ..+..+...+. .....+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhHH
Confidence 0000 0000111222222 22222 345568899999643 34555544444 333456665555 4444432
Q ss_pred h-ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 301 F-MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 301 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
. ......++++++++++....+...+.......+ .+.+..+++.++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 223457899999999999888877643321111 356788999999977543
No 112
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=4.9e-05 Score=85.23 Aligned_cols=167 Identities=12% Similarity=0.057 Sum_probs=102.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL 254 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (911)
...+.|+|..|+|||+|++++.+.... ...-..+++++ ..++...+...++... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 356899999999999999999997521 12222345553 3456666665553210 1123344444
Q ss_pred cCCcEEEEEccccccc---cc-ccccccCCCCCCCCcEEEEEcCchh---------HhhhccccceEEeccCCHHHHHHH
Q 042327 255 SEKKFVLLLDDVWERV---DL-TKVGVPLPRPKNMASKVVFTTRSEE---------VCGFMEAHRKFKMVCLSDNDSWDL 321 (911)
Q Consensus 255 ~~k~~LlVlDdv~~~~---~~-~~~~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 321 (911)
+. .-+||+||+.... .+ +.+...+......|..||+|+.... +...+...-.+.+++++.++-.++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 33 3488899995321 12 2222222211234557888876432 334445566889999999999999
Q ss_pred HHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 322 FQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 322 f~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
+.+++...... ..--+++..-|++.++|.|-.+.-+.
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988543211 01224678899999999998776554
No 113
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=1.3e-06 Score=98.20 Aligned_cols=126 Identities=26% Similarity=0.406 Sum_probs=101.4
Q ss_pred ccccccceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEE
Q 042327 509 VREWENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQL 587 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 587 (911)
+..+.++..|++.+|.+..+.. +..+++|++|++++|.+.++.. +..+..|+.|++++|.|+.++ .+..++.|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 4566789999999999999988 8899999999999999988876 677888999999999998876 56669999999
Q ss_pred eecCCCCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccc
Q 042327 588 DLSYSSIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 588 ~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
++++|.++.++.. +..+.+|+.+.+.+|. +..+.. +..+..+..+++..|
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDN 218 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccc
Confidence 9999999988764 5788999999999983 343332 344444444455544
No 114
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=2.8e-07 Score=101.77 Aligned_cols=126 Identities=25% Similarity=0.289 Sum_probs=92.4
Q ss_pred cccceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCcc-ccCCCCCCEEee
Q 042327 512 WENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLG-ISKLVSLQQLDL 589 (911)
Q Consensus 512 ~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L 589 (911)
|.+|...++++|.+..+.. +.-++.|+.|+|++|++.+.. ++..+++|+.|||++|.+..+|.- ...+. |+.|++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 5677777888887766543 555778888888888877765 477888888889988888877632 22333 888888
Q ss_pred cCCCCccccccccCCccccEEeccccccccccC-hhhhcCCccccEEEcccccc
Q 042327 590 SYSSIKELPRELYALVNLKCLNLEHAEELITIP-QQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 590 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~ 642 (911)
++|.+++|- ++.+|.+|+.||+++|- +.... -..++.|..|+.|++.||..
T Consensus 240 rnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 888888875 78888888889888873 33321 12267788888888888754
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00021 Score=79.04 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=103.2
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCCceE-EEEEeCCccCHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEG-----PNTFDCV-IWVVVSKDLRVEYIQEV 226 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~F~~~-~wv~vs~~~~~~~~~~~ 226 (911)
++++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ...|... +-+.......... .+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 3479999999999999987654 488899999999999999998875210 1112111 1111111111111 111
Q ss_pred HHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEc-CchhHhh-hc
Q 042327 227 IAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTT-RSEEVCG-FM 302 (911)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTt-R~~~v~~-~~ 302 (911)
+.+++.. .-..+++-++++|++.... .+..+...+. .....+.+|++| ....+.. ..
T Consensus 96 l~~~~~~------------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRI------------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhh------------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHHHH
Confidence 1111110 0112445589999986432 2444433332 222344555555 3333322 22
Q ss_pred cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHHHH
Q 042327 303 EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALITIG 359 (911)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~~~ 359 (911)
+....++.+++++++....+.+.+.......+ .+....+++.++|.+- ++..+-
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHHHH
Confidence 33457899999999999998887754332222 3567788888998665 333333
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00015 Score=83.58 Aligned_cols=195 Identities=16% Similarity=0.119 Sum_probs=107.9
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCc--eEEEEEeCCccCHHHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGPNTFD--CVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
.+++|.+..++.+.+++..++.. .+.++|+.|+||||+|+.+++...- ..... ...+- .+..-.-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccc----cCcccHHHHHHhcC
Confidence 35899999999999999877644 6889999999999999999887611 10000 00000 00000111122211
Q ss_pred cCCCC---CcccccCHHHHHHHHHHHc-----cCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEc-CchhHh
Q 042327 231 MGFFD---DSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTT-RSEEVC 299 (911)
Q Consensus 231 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTt-R~~~v~ 299 (911)
-.... +.......++.. .+.+.+ .+++-++|+|+++... ....+...+. .....+++|++| ....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhh
Confidence 10000 000011122222 122222 2455578999996432 3444444443 223356665555 434432
Q ss_pred hh-ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 300 GF-MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
.. .+....+++..++.++....+.+.+.......+ .+....|++.++|.+.-+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 233468899999999999999887754432222 256778899999988655443
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00018 Score=82.46 Aligned_cols=197 Identities=14% Similarity=0.070 Sum_probs=107.7
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|.+..++.+.+++..++.. .+.++|+.|+||||+|+.+++...- ....+ + ..++.-...+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---C----CcccccHHHHHhhcccC
Confidence 45899999999999999887654 4789999999999999999887611 01000 0 00111011111111000
Q ss_pred CCC-----CcccccCHHHH---HHHHHHH-ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEE-EEcCchhHhh
Q 042327 233 FFD-----DSWRAKSVEEK---ALEIFNS-LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVV-FTTRSEEVCG 300 (911)
Q Consensus 233 ~~~-----~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~ii-vTtR~~~v~~ 300 (911)
... +.......++. ...+... ..+++-++|+|++... .....+...+. .......+| +||....+..
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHhhHH
Confidence 000 00001112221 1111111 1345568899999643 33444444443 222344444 5555454432
Q ss_pred -hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHHHHhhh
Q 042327 301 -FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALITIGRAM 362 (911)
Q Consensus 301 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~~~~~l 362 (911)
..+....+++.+++.++..+.+.+.+.......+ .+....|++.++|.+- |+..+-.++
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2334578999999999999888877654331122 2456778899999774 455544433
No 118
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.00052 Score=73.36 Aligned_cols=205 Identities=16% Similarity=0.190 Sum_probs=123.1
Q ss_pred CCcccchhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIA 228 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 228 (911)
+..++||+.+++.+-+++.. +..+-+.|.|.+|.|||.+...++.+....... -+++++.+..--....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 35689999999999888864 466789999999999999999999987221111 2456776665556677778777
Q ss_pred HHc--CCCCCcccccCHHHHHHHHHHHccCC--cEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCch--hHh-
Q 042327 229 KQM--GFFDDSWRAKSVEEKALEIFNSLSEK--KFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSE--EVC- 299 (911)
Q Consensus 229 ~~l--~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~--~v~- 299 (911)
..+ .... .....+....+.++..+. .+|+|+|+.+... .-..+...|....-.++++|+.---. +..
T Consensus 228 ~~~~q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhcC----CchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 776 2211 122255566666666543 5899999986421 11122222221233466665433211 111
Q ss_pred ---hhcc-----ccceEEeccCCHHHHHHHHHHHhcCccc--CCCccHHHHHHHHHHHcCCChhHHHHHHhhh
Q 042327 300 ---GFME-----AHRKFKMVCLSDNDSWDLFQQKVGKEIL--NSHPDILELAQTVARECGGLPLALITIGRAM 362 (911)
Q Consensus 300 ---~~~~-----~~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l 362 (911)
..+. ....+..++.+.++-.+++..+...... ..+..++-.|++++.-.|-+--|+-+.-+++
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111 2346788999999999999998865431 1122344444444444455555555444333
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00015 Score=83.05 Aligned_cols=182 Identities=16% Similarity=0.154 Sum_probs=104.5
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCceEEEEEe
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGP------------------NTFDCVIWVVV 214 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~v 214 (911)
++++|-+..++.+.+++..++.. .+.++|+.|+||||+|+.+.+...-.. +.|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 35899999999999999876654 568999999999999999987761000 00111222221
Q ss_pred CCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEE
Q 042327 215 SKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFT 292 (911)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivT 292 (911)
+....+++ .+++...... .-..+++-++|+|+++... ....+...+. .....+.+|++
T Consensus 96 ~~~~~vd~-ir~l~~~~~~------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~~~fIL~ 155 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQY------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILA 155 (527)
T ss_pred cccCCHHH-HHHHHHHHhh------------------CcccCCceEEEEcCcccCCHHHHHHHHHHHh-CCCCCEEEEEE
Confidence 11111111 1111111110 0113566799999996542 2333444443 22235556655
Q ss_pred cCc-hhHh-hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHHH
Q 042327 293 TRS-EEVC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALITI 358 (911)
Q Consensus 293 tR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~~ 358 (911)
|.+ +.+. ...+....+++++++.++....+.+.+..+.... -.+....|++.++|.+- |+..+
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 543 3332 1222346889999999999988887764432111 12456788899999775 44333
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00019 Score=85.71 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=104.8
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
.++||.+..++.|.+++..+++ +.+.++|..|+||||+|+.+.+...-. ..... ..+..-.-.+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCC-------CCCcccHHHHHHHcCCC
Confidence 3589999999999999988765 457899999999999999998876210 00000 00000000011110000
Q ss_pred CCC-----CcccccCHHHHHHHHHH-----HccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEc-CchhHh
Q 042327 233 FFD-----DSWRAKSVEEKALEIFN-----SLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTT-RSEEVC 299 (911)
Q Consensus 233 ~~~-----~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTt-R~~~v~ 299 (911)
... +.......++... +.+ -..++.-++|||+++.. ..+..+...+. .-...+.+|++| ....+.
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhh
Confidence 000 0000111222221 111 12355668899999643 33444544444 223345555444 444444
Q ss_pred h-hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 300 G-FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 300 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
. ..+....|++..++.++..+.+.+.+..+....+ .+....|++.++|.+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 3 2334578899999999999888887644331111 245678899999987433
No 121
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.2e-05 Score=74.17 Aligned_cols=101 Identities=25% Similarity=0.419 Sum_probs=76.0
Q ss_pred cceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC--ccccCCCCCCEEeecC
Q 042327 514 NVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP--LGISKLVSLQQLDLSY 591 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~ 591 (911)
....++|.+|.+..++.++.++.|.+|.+.+|+++.+.+..-..+++|..|.|.+|+|..+- ..+..|+.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 55678888888888888888888999999988888888887777778888888888877552 2455677888888888
Q ss_pred CCCccccc----cccCCccccEEeccc
Q 042327 592 SSIKELPR----ELYALVNLKCLNLEH 614 (911)
Q Consensus 592 ~~i~~lp~----~~~~l~~L~~L~l~~ 614 (911)
|.++..+. -+..+++|++||..+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 87775442 245566666666654
No 122
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.4e-05 Score=57.06 Aligned_cols=41 Identities=41% Similarity=0.589 Sum_probs=34.2
Q ss_pred CCCCEEeecCCCCccccccccCCccccEEeccccccccccCh
Q 042327 582 VSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQ 623 (911)
Q Consensus 582 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 623 (911)
++|++|++++|+|+.+|..+++|++|+.|++++| .+..++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999999999988999999999999999 5666654
No 123
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=1.6e-06 Score=76.17 Aligned_cols=109 Identities=19% Similarity=0.314 Sum_probs=83.2
Q ss_pred ceEeecccccccccC----CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeec
Q 042327 515 VRRLSLMQNEITNLK----EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLS 590 (911)
Q Consensus 515 l~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 590 (911)
+..++|+++.+-.++ .+.....|...++++|.+.++|+.+-..++.+..|+|++|.|+.+|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 344555555443221 2456677888888888888888887777788888888888888888888888888888888
Q ss_pred CCCCccccccccCCccccEEeccccccccccChh
Q 042327 591 YSSIKELPRELYALVNLKCLNLEHAEELITIPQQ 624 (911)
Q Consensus 591 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 624 (911)
.|.+...|..+..|.+|-.|+..+| ....+|-.
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 8888888888888888888888777 45566654
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00026 Score=81.83 Aligned_cols=200 Identities=15% Similarity=0.092 Sum_probs=107.1
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEE-eCCccCHHHHHHHHHHHc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVV-VSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l 231 (911)
.+++|.+..++.+.+++..+++ +.+.++|+.|+||||+|+.+.+... -....+.-.|-. +...++.-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 3589999999999998887665 4588999999999999999888761 111111001110 001111111111111111
Q ss_pred CCCC---CcccccCHHHHHHHHHHH----ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEE-EcCchhHhh-
Q 042327 232 GFFD---DSWRAKSVEEKALEIFNS----LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVF-TTRSEEVCG- 300 (911)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iiv-TtR~~~v~~- 300 (911)
.... +.......+++...+... ..+++-++|+|+++.. .....+...+. .....+.+|+ |++...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhHH
Confidence 0000 000111123332221111 2345558899998643 23444444443 2223455554 444444432
Q ss_pred hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHHH
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALITI 358 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~~ 358 (911)
.......+++.+++.++....+.+.+.......+ .+.+..+++.++|..- |+..+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 2344578999999999988888876643321111 3567789999999654 44433
No 125
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.88 E-value=6.6e-05 Score=81.76 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=56.4
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHH
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQE 225 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 225 (911)
.+++.+...+.+...+... +.|.++|++|+|||++|+.+++.. .....|+.+.||++++..+..++..
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 4688888999999888753 567889999999999999999987 4456788999999999888766554
No 126
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.88 E-value=0.00028 Score=74.30 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=81.6
Q ss_pred cccchhhHHHHHHHHHc---C------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC
Q 042327 155 TVVGLESTLQKVWRCIV---E------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR 219 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~---~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~ 219 (911)
.++|.+..++++.++.. - ....-+.++|.+|+||||+|+.++..... .......-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 36787777666544321 0 12235889999999999999888776521 11111112444442
Q ss_pred HHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc------cc-----cccccccCCCCCCCCcE
Q 042327 220 VEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER------VD-----LTKVGVPLPRPKNMASK 288 (911)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~-----~~~~~~~~~~~~~~~s~ 288 (911)
.+ +...+... ..... ..+.+.. ..-+|+||++... .+ +..+...+. ....+.+
T Consensus 99 -~~----l~~~~~g~-------~~~~~-~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~ 162 (284)
T TIGR02880 99 -DD----LVGQYIGH-------TAPKT-KEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLV 162 (284)
T ss_pred -HH----HhHhhccc-------chHHH-HHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEE
Confidence 12 22222111 11112 2222222 2358899999632 11 222223333 3334566
Q ss_pred EEEEcCchhHhhhc--------cccceEEeccCCHHHHHHHHHHHhcC
Q 042327 289 VVFTTRSEEVCGFM--------EAHRKFKMVCLSDNDSWDLFQQKVGK 328 (911)
Q Consensus 289 iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (911)
||+++.....-... .....+++++++.+|-.+++...+..
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 77776543322111 11357899999999999999887654
No 127
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0002 Score=81.80 Aligned_cols=196 Identities=14% Similarity=0.138 Sum_probs=109.7
Q ss_pred CcccchhhHHHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|-+..++.+.+.+..++ ...+.++|+.|+||||+|+.+.+... -....+. ..++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 357999888888888888765 46788899999999999999988762 1110000 01111111112211110
Q ss_pred CCCCcc---cccCHHHHHHHHHHH-----ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhHhhh
Q 042327 233 FFDDSW---RAKSVEEKALEIFNS-----LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRS-EEVCGF 301 (911)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~-~~v~~~ 301 (911)
...-.. .....++. +.+.+. ..+++-++|+|+++.. ..+..+...+. .......+|++|.. ..+...
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccCCCEEEEEecCChhhhhHH
Confidence 000000 00111211 112221 2356679999999643 33444444443 22234556555544 444322
Q ss_pred -ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh-hHHHHHHhhh
Q 042327 302 -MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP-LALITIGRAM 362 (911)
Q Consensus 302 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P-lai~~~~~~l 362 (911)
.+....+++++++.++....+.+.+.......+ .+.+..|++.++|.+ .|+..+..++
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 233467899999999999998886654331122 356778899999965 6777766544
No 128
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=2.4e-06 Score=84.93 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=64.4
Q ss_pred CccEEEccCCCCCCcCh--hHHhcCCcccEEEccCCCCc---ccCccccCCCCCCEEeecCCCCccccccc-cCCccccE
Q 042327 536 HLLTLFLDNNESLKIPN--DFFQYMHSLKVLNLSRIKLK---SFPLGISKLVSLQQLDLSYSSIKELPREL-YALVNLKC 609 (911)
Q Consensus 536 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~ 609 (911)
-+..|.+.++.+..... .+-...++++.|||.+|.|+ ++-.-+.+|++|++|+|+.|.+..--..+ ..+.+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34466666666554432 23345778899999999887 34445668889999999988665221111 24568888
Q ss_pred EeccccccccccChhhhcCCccccEEEcccc
Q 042327 610 LNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 610 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
|-|.|+..-..-....+..++.+++|.++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 8887763211111122556677777777765
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.84 E-value=0.00016 Score=75.63 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=79.2
Q ss_pred cccchhhHHHHHHH---HHc------------CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC
Q 042327 155 TVVGLESTLQKVWR---CIV------------EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR 219 (911)
Q Consensus 155 ~~vGr~~~~~~l~~---~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~ 219 (911)
.++|.+..+++|.+ ++. .+....+.++|++|+||||+|+.+++..... ..-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 37888877766643 221 1234568899999999999999998865211 11111123333221
Q ss_pred HHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc----------ccccccccCCCCCCCCcEE
Q 042327 220 VEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV----------DLTKVGVPLPRPKNMASKV 289 (911)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~~~~~~~~~~~s~i 289 (911)
++ .... ...... ....+.+... .-+|++|+++... ..+.+...+. .......+
T Consensus 84 --~l----~~~~-------~g~~~~-~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~v 146 (261)
T TIGR02881 84 --DL----VGEY-------IGHTAQ-KTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFVL 146 (261)
T ss_pred --Hh----hhhh-------ccchHH-HHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEEE
Confidence 11 1111 001111 1122222222 2488999996421 1222222222 22223355
Q ss_pred EEEcCchhHhh------hc--cccceEEeccCCHHHHHHHHHHHhcCc
Q 042327 290 VFTTRSEEVCG------FM--EAHRKFKMVCLSDNDSWDLFQQKVGKE 329 (911)
Q Consensus 290 ivTtR~~~v~~------~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (911)
|+++....... .+ .....+++++++.+|-.+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 55554332211 11 113468899999999999998877543
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.83 E-value=0.00031 Score=73.90 Aligned_cols=155 Identities=14% Similarity=0.188 Sum_probs=82.4
Q ss_pred cccchhhHHHHHHHHHc--------C-------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC
Q 042327 155 TVVGLESTLQKVWRCIV--------E-------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR 219 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~--------~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~ 219 (911)
.++|.+..+++|.++.. . .....+.++|.+|+||||+|+.+++.... .+.-...-|+.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~~-- 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTRD-- 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecHH--
Confidence 46787776665543321 0 12335889999999999999999886511 111111124444421
Q ss_pred HHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc------ccc-----ccccccCCCCCCCCcE
Q 042327 220 VEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER------VDL-----TKVGVPLPRPKNMASK 288 (911)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~-----~~~~~~~~~~~~~~s~ 288 (911)
+ +...... ...... ..+.+... .-+|+||++... .++ ..+...+. ....+.+
T Consensus 101 --~----l~~~~~g-------~~~~~~-~~~l~~a~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~ 163 (287)
T CHL00181 101 --D----LVGQYIG-------HTAPKT-KEVLKKAM--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLV 163 (287)
T ss_pred --H----HHHHHhc-------cchHHH-HHHHHHcc--CCEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEE
Confidence 2 2222111 011111 22222222 248999999642 011 12222232 3334567
Q ss_pred EEEEcCchhHhhhc--------cccceEEeccCCHHHHHHHHHHHhcCc
Q 042327 289 VVFTTRSEEVCGFM--------EAHRKFKMVCLSDNDSWDLFQQKVGKE 329 (911)
Q Consensus 289 iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (911)
||+++....+...+ .....+..++++.+|..+++...+...
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 77777654432211 123578999999999999998877543
No 131
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.00095 Score=66.84 Aligned_cols=173 Identities=18% Similarity=0.156 Sum_probs=97.2
Q ss_pred CcccchhhHHHHHHHHHc-----CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIV-----EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIA 228 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 228 (911)
.+|+|.++.++++-=.+. .+..--|.++|++|.||||||.-++++. .+ .+ -++-........=+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--Ce----EecccccccChhhHHHHH
Confidence 358999998888755553 3467789999999999999999999997 32 11 111111111111111111
Q ss_pred HHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc---------ccccccccCCCCCCCCc-----------E
Q 042327 229 KQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV---------DLTKVGVPLPRPKNMAS-----------K 288 (911)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~s-----------~ 288 (911)
.. |+.. =++.+|.+.... ..+++..-.--..++++ -
T Consensus 99 t~-----------------------Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 99 TN-----------------------LEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred hc-----------------------CCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 11 2222 245566664210 01110000000112222 2
Q ss_pred EEEEcCchhHhhhcc--ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHh
Q 042327 289 VVFTTRSEEVCGFME--AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGR 360 (911)
Q Consensus 289 iivTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~ 360 (911)
|=-|||.-.+..-+. ..-+.+++..+.+|-.++..+.+..-..... ++-+.+|+++..|-|.-..-+-+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHH
Confidence 336888665543332 2446789999999999999988754332222 35688999999999975544443
No 132
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.82 E-value=0.00013 Score=75.79 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=105.4
Q ss_pred CCcccchhhHHHHHHHHHcCCC---CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIVEDP---AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 229 (911)
.+.+.+|+.++..+...+.+.. .+.|.|.|..|.|||.+.+.+++.. .. ..+|+++-+.++.+.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 3568899999999999887643 2456899999999999999999987 22 3589999999999999999999
Q ss_pred HcCCCCCccccc-----CHHHHHHHHHH--Hc--cCCcEEEEEccccccccccccccc----CCCCCCCCcEEEEEcCch
Q 042327 230 QMGFFDDSWRAK-----SVEEKALEIFN--SL--SEKKFVLLLDDVWERVDLTKVGVP----LPRPKNMASKVVFTTRSE 296 (911)
Q Consensus 230 ~l~~~~~~~~~~-----~~~~~~~~l~~--~l--~~k~~LlVlDdv~~~~~~~~~~~~----~~~~~~~~s~iivTtR~~ 296 (911)
+.+..+.+.... ........+.+ .. .++.++||||+++...|.+.+..+ +..--....-+|+++--.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 996332211111 11122222322 12 246899999999765554443111 000011123334443322
Q ss_pred --hH-hhhcccc--ceEEeccCCHHHHHHHHHHH
Q 042327 297 --EV-CGFMEAH--RKFKMVCLSDNDSWDLFQQK 325 (911)
Q Consensus 297 --~v-~~~~~~~--~~~~l~~L~~~e~~~Lf~~~ 325 (911)
.. ...++.. .++.....+.+|...++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 1123333 35677888999999988764
No 133
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.0004 Score=80.69 Aligned_cols=192 Identities=16% Similarity=0.133 Sum_probs=103.4
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCc---eEEEE-EeCCccCHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFD---CVIWV-VVSKDLRVEYIQEVIA 228 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~---~~~wv-~vs~~~~~~~~~~~i~ 228 (911)
..++|.+..++.+.+++..++. +.+.++|+.|+||||+|+.++....-...... |.... +....++..+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie------ 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE------ 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE------
Confidence 3589999999999999987654 56689999999999999999877511000000 00000 0000000000
Q ss_pred HHcCCCCCcccccCHHHHHHHHHHH-ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEE-EEEcCchhHhh-hcc
Q 042327 229 KQMGFFDDSWRAKSVEEKALEIFNS-LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKV-VFTTRSEEVCG-FME 303 (911)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~i-ivTtR~~~v~~-~~~ 303 (911)
+.... ........++...+... ..+++-++|+|++... ..+..+...+. .......+ ++|++...+.. ..+
T Consensus 92 --idaas-n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~KLl~TI~S 167 (725)
T PRK07133 92 --MDAAS-NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVHKIPLTILS 167 (725)
T ss_pred --Eeccc-cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChhhhhHHHHh
Confidence 00000 00000111222222111 2356668999999643 23444444433 22224444 45555444432 233
Q ss_pred ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHHH
Q 042327 304 AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALITI 358 (911)
Q Consensus 304 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~~ 358 (911)
....+++.+++.++....+...+........ .+.+..+++.++|.+. |+..+
T Consensus 168 Rcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 168 RVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 4568999999999999888876643321111 2457789999999765 44443
No 134
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00047 Score=80.23 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=105.9
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhccc--------------------CCCCCceEEEE
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLE--------------------GPNTFDCVIWV 212 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~F~~~~wv 212 (911)
++++|.+..++.+.+++..+... .+.++|+.|+||||+|+.+.....- ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 35899999999999999887654 5789999999999999988776510 0112332 222
Q ss_pred EeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEE
Q 042327 213 VVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVV 290 (911)
Q Consensus 213 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~ii 290 (911)
..+....+.++. .++.++... -..+++=++|+|++... ..+..+...+. .-...+.+|
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tifI 155 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIFI 155 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEEE
Confidence 222111122211 111111100 01234558899998643 33444544444 222345555
Q ss_pred E-EcCchhHhhh-ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 291 F-TTRSEEVCGF-MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 291 v-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
+ ||+...+... .+....+++.+++.++....+.+.+.......+ .+.+..|++.++|..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5 5454444332 334568999999999999999887654432222 245778999999976544
No 135
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.78 E-value=0.00019 Score=72.49 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=114.4
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEE-EEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIW-VVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|-+..++-+.+.+......+...+|++|.|||+-|+.++... --.+-|.+++. .++|......-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-----
Confidence 4579999999999999888778999999999999999999988876 33455655433 3444432221000000
Q ss_pred CCCCcccccCHHHHHHHHHHHc--cCCc-EEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchh-Hhh-hcccc
Q 042327 233 FFDDSWRAKSVEEKALEIFNSL--SEKK-FVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEE-VCG-FMEAH 305 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~-v~~-~~~~~ 305 (911)
.+...+........ .-++ -.+|||+++.. +.|..+...+. .....++.|+.|.... +.. ..+..
T Consensus 110 --------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 110 --------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred --------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChHHHhhH
Confidence 00010000000000 0123 47889999753 56777766655 3445556555554433 211 11234
Q ss_pred ceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC-hhHHHHHH
Q 042327 306 RKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL-PLALITIG 359 (911)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~-Plai~~~~ 359 (911)
..++.++|.+++...-+...+..+....+ .+..+.|++.++|. --|+.++-
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 57889999999999999888866553333 35677899999984 45555553
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.78 E-value=0.00036 Score=78.20 Aligned_cols=160 Identities=21% Similarity=0.150 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL 254 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (911)
...+.|+|..|+|||+|++++++...+ ...-..++++++ .++...+...+... ..+.. .+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~~~~----~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNALRNN-------KMEEF----KEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHHHcC-------CHHHH----HHHH
Confidence 357899999999999999999998721 111134556643 23344444444311 12222 2223
Q ss_pred cCCcEEEEEcccccccc---c-ccccccCCCCCCCCcEEEEEcCchh---------HhhhccccceEEeccCCHHHHHHH
Q 042327 255 SEKKFVLLLDDVWERVD---L-TKVGVPLPRPKNMASKVVFTTRSEE---------VCGFMEAHRKFKMVCLSDNDSWDL 321 (911)
Q Consensus 255 ~~k~~LlVlDdv~~~~~---~-~~~~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 321 (911)
++ .-+|||||+..... + +.+...+......+..+|+|+.... +...+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 23889999964321 1 1122111101123456888876422 223333445789999999999999
Q ss_pred HHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHH
Q 042327 322 FQQKVGKEILNSHPDILELAQTVARECGGLPLALI 356 (911)
Q Consensus 322 f~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~ 356 (911)
+.+.+.......+ +++...|++.+.|..-.+.
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 9998865432222 4667788888888765443
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.77 E-value=0.00026 Score=78.21 Aligned_cols=170 Identities=15% Similarity=0.234 Sum_probs=97.0
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++.|++..++++.+.+.. ...+.|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4578999999998876631 234678999999999999999999986 222 222221
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccccc------------cc-cccccc---CCC-C
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERV------------DL-TKVGVP---LPR-P 282 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~~-~~~~~~---~~~-~ 282 (911)
.++ ..... . ........+.+.. ...+.+|+|||++... .. ..+... +.. .
T Consensus 199 ~~l----~~~~~-------g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SEL----VQKFI-------G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHH----hHhhc-------c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 11110 0 1122223333332 3467899999996421 00 011111 110 1
Q ss_pred CCCCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 283 KNMASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 283 ~~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
...+..||.||...+... .+ .....+.++..+.++-.++|+.............+ ..+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 223567888887654321 11 22457899999999999999987754432222233 4456666664
No 138
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00026 Score=82.65 Aligned_cols=193 Identities=17% Similarity=0.140 Sum_probs=108.4
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|.+..++.+..++..++. +.+.++|..|+||||+|+.+++... -..... ....++.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4589999999999988887654 4568999999999999999988761 100000 0011122222333332221
Q ss_pred CCC---CcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhHhh-
Q 042327 233 FFD---DSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRS-EEVCG- 300 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~-~~v~~- 300 (911)
... +.......++. +.+.+.+ .+++-++|+|+++.. ...+.+...+. .....+.+|++|.+ ..+..
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhhHH
Confidence 100 00001112222 1222221 245668999999643 33444444443 22235566665543 33322
Q ss_pred hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
..+....+.+..++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2223457889999999999888887654432222 256778999999988655443
No 139
>PRK06620 hypothetical protein; Validated
Probab=97.75 E-value=9.8e-05 Score=74.11 Aligned_cols=136 Identities=12% Similarity=0.035 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHcc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS 255 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (911)
+.+.|+|+.|+|||+|++.+++.. .. .++. ..+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 568999999999999999988775 11 1111 0000 0 0 011
Q ss_pred CCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchh-------HhhhccccceEEeccCCHHHHHHHHHHHhcC
Q 042327 256 EKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEE-------VCGFMEAHRKFKMVCLSDNDSWDLFQQKVGK 328 (911)
Q Consensus 256 ~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (911)
+..-+|++||+....+ ..+...+......|..||+|++... ..+.+....++++++++.++-..++.+.+..
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 1234788999963211 1111111101134678999997543 2333445568999999999988888887753
Q ss_pred cccCCCccHHHHHHHHHHHcCCChhHHH
Q 042327 329 EILNSHPDILELAQTVARECGGLPLALI 356 (911)
Q Consensus 329 ~~~~~~~~l~~~~~~i~~~c~g~Plai~ 356 (911)
.....+ +++..-|++.+.|.--.+.
T Consensus 163 ~~l~l~---~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 163 SSVTIS---RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred cCCCCC---HHHHHHHHHHccCCHHHHH
Confidence 322222 3577788888877654443
No 140
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.0005 Score=77.27 Aligned_cols=181 Identities=16% Similarity=0.174 Sum_probs=103.8
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCC--------------------CCCceEEEE
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGP--------------------NTFDCVIWV 212 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~F~~~~wv 212 (911)
++++|.+..++.+.+++..++. +.+.++|+.|+||||+|+.+.+...... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4589999999999999987765 5688999999999999999988752100 0111 1111
Q ss_pred EeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEE
Q 042327 213 VVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVV 290 (911)
Q Consensus 213 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~ii 290 (911)
.........++ +++.+.+. ..-..+++-++|+|+++.. ...+.+...+. .......+|
T Consensus 96 ~g~~~~gid~i-r~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~~I 155 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVKFF 155 (451)
T ss_pred eccccCCHHHH-HHHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCceEE
Confidence 11001011111 11111110 0011356678899998543 22333433443 223355666
Q ss_pred EEcCc-hhHhh-hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHHH
Q 042327 291 FTTRS-EEVCG-FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALITI 358 (911)
Q Consensus 291 vTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~~ 358 (911)
++|.. ..+.. ..+....+++.++++++....+.+.+.......+ .+.+..|++.++|.+- |+..+
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 66533 33322 2233567899999999999888877643321111 3467789999999664 44444
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00019 Score=80.54 Aligned_cols=179 Identities=20% Similarity=0.165 Sum_probs=102.3
Q ss_pred cccchhhH--HHHHHHHHcCC-CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCc-eEEEEEeCCccCHHHHHHHHHHH
Q 042327 155 TVVGLEST--LQKVWRCIVED-PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFD-CVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 155 ~~vGr~~~--~~~l~~~l~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
.++|-... .....+..... ....+.|+|..|+|||+|++.+++... +.+.. .++|++. .++..++...
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~ 178 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDS 178 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHH
Confidence 35574332 22333333322 245699999999999999999999872 22222 4666654 3455555555
Q ss_pred cCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc---cc-ccccccCCCCCCCCcEEEEEcC-chhH-------
Q 042327 231 MGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV---DL-TKVGVPLPRPKNMASKVVFTTR-SEEV------- 298 (911)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~~~~~~~~~~~~~s~iivTtR-~~~v------- 298 (911)
+.. ...++ +.+....+.-+|++||+.... .+ ..+...+......|..||+||. ...-
T Consensus 179 ~~~-------~~~~~----f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 179 MKE-------GKLNE----FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred Hhc-------ccHHH----HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 431 11222 223333345689999996421 11 1221111101123457888885 3321
Q ss_pred -hhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 299 -CGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 299 -~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
.+.+.....+.+++.+.+.-..++.+++.......+ .++...|++.+.|.--.+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 223344557899999999999999988754332222 356778888888765444
No 142
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00072 Score=76.43 Aligned_cols=193 Identities=12% Similarity=0.103 Sum_probs=105.6
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++|-+..++.+...+..++.. ++.++|..|+||||+|+.+.+.... ....+. .++..-.-.+.+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c-~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC-EQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC-CCCCCC-------CCCcccHHHHHHhhcCC
Confidence 35899999999999999877665 5689999999999999988776511 000000 00000000000000000
Q ss_pred CCC---CcccccCHHHHHHHHHH----HccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCch-hHh-hh
Q 042327 233 FFD---DSWRAKSVEEKALEIFN----SLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSE-EVC-GF 301 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~-~v~-~~ 301 (911)
... +.......++....+.. -..+++-++|+|++... .....+...+. .....+++|++|.+. .+. ..
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh-hcCCceEEEEEECChhhCchHH
Confidence 000 00000112222222211 01245568899999643 22333433333 223456666666553 222 12
Q ss_pred ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 302 MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
.+....+++.+++.++....+.+.+.......+ .+.+..|++.++|.+.-+..+
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 233568899999999999998877654432211 356778999999988655444
No 143
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00089 Score=75.73 Aligned_cols=181 Identities=11% Similarity=0.115 Sum_probs=102.2
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhccc--CCC----------------CCceEEEEEe
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLE--GPN----------------TFDCVIWVVV 214 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------~F~~~~wv~v 214 (911)
..++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.++..... ... .|...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 3579999999999999987654 45678999999999999998876510 000 0111111211
Q ss_pred CCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH-HccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEE
Q 042327 215 SKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN-SLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVF 291 (911)
Q Consensus 215 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iiv 291 (911)
+...... +...+...+.. -..+++-++|+|+++.. .....+...+. .......+|+
T Consensus 96 as~~gvd--------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~v~Il 154 (486)
T PRK14953 96 ASNRGID--------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRTIFIL 154 (486)
T ss_pred ccCCCHH--------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEE
Confidence 1111111 01111111111 12356679999999643 22334433333 2223444554
Q ss_pred Ec-CchhHhh-hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 292 TT-RSEEVCG-FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 292 Tt-R~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
+| +...+.. .......+.+.+++.++....+.+.+.......+ .+.+..+++.++|.+..+...
T Consensus 155 ~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 155 CTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 44 4333332 2233457899999999999888887654332211 245677888899976544443
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.00051 Score=76.85 Aligned_cols=153 Identities=11% Similarity=0.062 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL 254 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (911)
...+.|+|+.|+|||+|++.+++.... ....+++++. ..+...+...+... . ...+++.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~------~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRS------ELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeH------HHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 357889999999999999999998721 1233455542 33444554444311 1 12233333
Q ss_pred cCCcEEEEEcccccccc--c--ccccccCCCCCCCCcEEEEEcCch---------hHhhhccccceEEeccCCHHHHHHH
Q 042327 255 SEKKFVLLLDDVWERVD--L--TKVGVPLPRPKNMASKVVFTTRSE---------EVCGFMEAHRKFKMVCLSDNDSWDL 321 (911)
Q Consensus 255 ~~k~~LlVlDdv~~~~~--~--~~~~~~~~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 321 (911)
. +.-+|++||+..... + +.+...+......|..||+||... .+...+.....+.+.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 334888999854321 1 122222110112356788888542 1233344456889999999999999
Q ss_pred HHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 322 FQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 322 f~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
+.+++.......+ .++..-|++.+.|.
T Consensus 280 L~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 280 LERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 9988754432222 34555666666643
No 145
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.71 E-value=0.0004 Score=84.09 Aligned_cols=155 Identities=13% Similarity=0.176 Sum_probs=89.4
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccC--CC-CCceEEE-EEeCCccCHHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEG--PN-TFDCVIW-VVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-~F~~~~w-v~vs~~~~~~~~~~~i~~ 229 (911)
+.++||+.++.++++.|......-+.++|.+|+||||+|+.++.+.... .. -.+..+| +..+.- ..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------~a 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------QA 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh----------hc
Confidence 3479999999999999987766677799999999999999999886211 00 1123333 222210 00
Q ss_pred HcCCCCCcccccCHHHHHHHHHHHc--cCCcEEEEEccccccc---------ccccccccCCCCCCCCcEEEEEcCchhH
Q 042327 230 QMGFFDDSWRAKSVEEKALEIFNSL--SEKKFVLLLDDVWERV---------DLTKVGVPLPRPKNMASKVVFTTRSEEV 298 (911)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~s~iivTtR~~~v 298 (911)
.. . .....++....+.+.+ .+++.+|++|++.... +...+..+.. ....-++|-||...+.
T Consensus 257 ----g~-~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 257 ----GA-S-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAEY 328 (852)
T ss_pred ----cc-c-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHHH
Confidence 00 0 0111222222222222 2468999999995421 1111222222 2223566766665432
Q ss_pred hh-------hccccceEEeccCCHHHHHHHHHHHh
Q 042327 299 CG-------FMEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 299 ~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
.. ..+....+.+++++.+++.+++....
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 11 11223589999999999999975443
No 146
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0033 Score=71.08 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=91.2
Q ss_pred CCcccchhhHHHHHHHHHcC------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIVE------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEV 226 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 226 (911)
+.+.+|.++.+++|++.|.- -+-+++++||++|+|||+|++.+++.. ...| +-+++..--|..++...
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhccc
Confidence 34569999999999998852 245899999999999999999999987 4445 23344444444433211
Q ss_pred HHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc---------cccccccc-----C----CCCCCCCcE
Q 042327 227 IAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV---------DLTKVGVP-----L----PRPKNMASK 288 (911)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~-----~----~~~~~~~s~ 288 (911)
=-..+| .. +....+.++ ..+.+.=+++||.++... .+-++..| | ....-.=|+
T Consensus 396 RRTYIG-------am-PGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 396 RRTYIG-------AM-PGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred cccccc-------cC-ChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 111111 00 111122222 224456688999986321 11111111 0 000111255
Q ss_pred EE-EEcCch-h-H-hhhccccceEEeccCCHHHHHHHHHHHh
Q 042327 289 VV-FTTRSE-E-V-CGFMEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 289 ii-vTtR~~-~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
|+ |||-|. + + +..++...+|++.+.+++|-.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 54 344332 2 2 2334556789999999999988887764
No 147
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=7.8e-05 Score=80.28 Aligned_cols=80 Identities=24% Similarity=0.416 Sum_probs=56.7
Q ss_pred ccccceEeecccccccccCCCCCCCCccEEEccCC-CCCCcChhHHhcCCcccEEEccCC-CCcccCccccCCCCCCEEe
Q 042327 511 EWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNN-ESLKIPNDFFQYMHSLKVLNLSRI-KLKSFPLGISKLVSLQQLD 588 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~ 588 (911)
.+.++++|++++|.+..+|.++ .+|++|.+++| .+..+|.. + ..+|++|++++| .+..+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEE
Confidence 3567889999988888777543 36999999886 46666654 3 357899999988 7777774 466677
Q ss_pred ecCCC---Cccccccc
Q 042327 589 LSYSS---IKELPREL 601 (911)
Q Consensus 589 L~~~~---i~~lp~~~ 601 (911)
++++. +..+|.++
T Consensus 119 L~~n~~~~L~~LPssL 134 (426)
T PRK15386 119 IKGSATDSIKNVPNGL 134 (426)
T ss_pred eCCCCCcccccCcchH
Confidence 76654 45666543
No 148
>PF14516 AAA_35: AAA-like domain
Probab=97.69 E-value=0.0024 Score=69.09 Aligned_cols=199 Identities=15% Similarity=0.176 Sum_probs=117.7
Q ss_pred CCcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-----cCHHH----H
Q 042327 153 DPTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-----LRVEY----I 223 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-----~~~~~----~ 223 (911)
.+..|.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+.. + +.. ..++++++... .+... +
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~-~~~-~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQG-YRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-H-HCC-CEEEEEEeecCCCcccCCHHHHHHHH
Confidence 345678886777788877663 3588999999999999999999887 2 223 34557776552 23444 4
Q ss_pred HHHHHHHcCCCCCc---cc--ccCHHHHHHHHHHHc---cCCcEEEEEcccccccc--------------cccccccCCC
Q 042327 224 QEVIAKQMGFFDDS---WR--AKSVEEKALEIFNSL---SEKKFVLLLDDVWERVD--------------LTKVGVPLPR 281 (911)
Q Consensus 224 ~~~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~--------------~~~~~~~~~~ 281 (911)
...|.++++....- +. ..........+.+.+ .+++.+|+||+|+...+ |..-....+
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~- 164 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP- 164 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc-
Confidence 45555556544310 10 112222333343332 26899999999964321 111111000
Q ss_pred CCCCCcEEEEEcCchh-H-hhh----ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 282 PKNMASKVVFTTRSEE-V-CGF----MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 282 ~~~~~s~iivTtR~~~-v-~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
....-++++....+. . ... ......+.|++++.+|...|+.+.-..- . .+..++|...+||+|.-+
T Consensus 165 -~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~---~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 165 -IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----S---QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred -ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----C---HHHHHHHHHHHCCCHHHH
Confidence 011111222211111 1 111 1224578999999999999988763221 1 123889999999999999
Q ss_pred HHHHhhhcC
Q 042327 356 ITIGRAMAC 364 (911)
Q Consensus 356 ~~~~~~l~~ 364 (911)
..++..+..
T Consensus 237 ~~~~~~l~~ 245 (331)
T PF14516_consen 237 QKACYLLVE 245 (331)
T ss_pred HHHHHHHHH
Confidence 999998865
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.68 E-value=0.00031 Score=77.72 Aligned_cols=171 Identities=18% Similarity=0.199 Sum_probs=95.3
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
.++.|.+..++++.+.+.- ...+.|.++|++|+|||++|+.+++.. ...| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se---- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE---- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch----
Confidence 3478999998888776631 134568899999999999999999986 3334 2221111
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc----------------cccccccCCC-CC
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD----------------LTKVGVPLPR-PK 283 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~~-~~ 283 (911)
+ .... ...........+.....+.+.+|+||+++.... +..+...+.. ..
T Consensus 253 --L----~~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 --L----IQKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred --h----hhhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1 1111 001111122222222345778999999853210 0011111110 11
Q ss_pred CCCcEEEEEcCchhHhhh--c---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 284 NMASKVVFTTRSEEVCGF--M---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
..+.+||.||...+.... + .....+.+...+.++..++|..+...........+. .++..+.|.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~----~la~~t~g~ 388 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLE----EFIMAKDEL 388 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHH----HHHHhcCCC
Confidence 335678888876654322 1 234578999999999999999876544322233343 344555543
No 150
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0011 Score=77.22 Aligned_cols=194 Identities=14% Similarity=0.077 Sum_probs=107.2
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
..++|.+..++.+..++..++. +.+.++|..|+||||+|+.+++... ....+.. ....+..-...+.|.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 3479999999999999887654 6788999999999999999988862 1111100 0011122222233322221
Q ss_pred CCC---CcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhHhh-
Q 042327 233 FFD---DSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRS-EEVCG- 300 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~-~~v~~- 300 (911)
... +.......++..+.+ +.+ .+++-++|+|+++.. ..+..+...+. .......+|++|.+ ..+..
T Consensus 90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHH
Confidence 100 000011122222222 221 245568899999643 33444444443 22234445544443 33322
Q ss_pred hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
..+....+++..++.++....+.+.+........ .+.+..|++.++|.+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2233467888899999988888776654321111 245778999999987655443
No 151
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.00029 Score=79.91 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL 254 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (911)
...+.|+|..|+|||+|++.+++...+ ...-..+++++.. ++...+...+.. ...+. +.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~~~----~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSE------KFTNDFVNALRN-------NTMEE----FKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHH------HHHHHHHHHHHc-------CcHHH----HHHHH
Confidence 356899999999999999999999721 1112345566443 233344444321 11222 22333
Q ss_pred cCCcEEEEEcccccccc---c-ccccccCCCCCCCCcEEEEEcCchh---------HhhhccccceEEeccCCHHHHHHH
Q 042327 255 SEKKFVLLLDDVWERVD---L-TKVGVPLPRPKNMASKVVFTTRSEE---------VCGFMEAHRKFKMVCLSDNDSWDL 321 (911)
Q Consensus 255 ~~k~~LlVlDdv~~~~~---~-~~~~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 321 (911)
+ +.-+|||||+..... + +.+...+......|..||+|+.... +.+.+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 244899999954211 1 1222211101123456888886532 233344456899999999999999
Q ss_pred HHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHH
Q 042327 322 FQQKVGKEILNSHPDILELAQTVARECGGLPLALI 356 (911)
Q Consensus 322 f~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~ 356 (911)
+.+.+.......+ +++...|++.+.|..-.+.
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 9998864322222 3567888888888766443
No 152
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.66 E-value=0.00025 Score=85.28 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=89.7
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccC--CCCC-ceEEEEEeCCccCHHHHHHHHHHHc
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEG--PNTF-DCVIWVVVSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l 231 (911)
.++||+++++++++.|......-+.++|.+|+|||++|+.++...... ...+ +..+|.. +.. .+....
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~----~l~a~~ 253 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMG----SLLAGT 253 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHH----HHhhhc
Confidence 479999999999999987666667899999999999999999886211 1111 3344431 111 111100
Q ss_pred CCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccccc----------ccccccccCCCCCCCCcEEEEEcCchhHh-
Q 042327 232 GFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERV----------DLTKVGVPLPRPKNMASKVVFTTRSEEVC- 299 (911)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~~~~~~~~~~~~~s~iivTtR~~~v~- 299 (911)
. ...+.++....+.+.+ +.++.+|++|+++... +...+..+.. . ...-++|-+|...+..
T Consensus 254 ~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l-~-~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 254 K------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL-S-SGKLRCIGSTTYEEYKN 325 (731)
T ss_pred c------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH-h-CCCeEEEEecCHHHHHH
Confidence 0 0112333444444444 3467999999996321 1112222221 1 1223555555542221
Q ss_pred ------hhccccceEEeccCCHHHHHHHHHHHh
Q 042327 300 ------GFMEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 300 ------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
...+.-..+.+++++.++..+++....
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111223578999999999999998654
No 153
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=2.9e-05 Score=90.92 Aligned_cols=126 Identities=19% Similarity=0.272 Sum_probs=84.7
Q ss_pred ccceEeeccccccccc--C-C-CCCCCCccEEEccCCCCCCcC-hhHHhcCCcccEEEccCCCCcccCccccCCCCCCEE
Q 042327 513 ENVRRLSLMQNEITNL--K-E-IPTCPHLLTLFLDNNESLKIP-NDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQL 587 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~--~-~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 587 (911)
.+|++|++.+...-.- + . ...+|.|++|.+.+-.+..-. ...+.++++|+.||+|+++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4888888887543211 1 1 245788999988886542221 23466788999999999988888 588889999998
Q ss_pred eecCCCCcccc--ccccCCccccEEeccccccccccChh------hhcCCccccEEEcccc
Q 042327 588 DLSYSSIKELP--RELYALVNLKCLNLEHAEELITIPQQ------VISNFSRLHVLRMYGT 640 (911)
Q Consensus 588 ~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~------~i~~l~~L~~L~l~~~ 640 (911)
.+++-.+..-+ ..+.+|++|++||+|...... -+.- .-..|++|+.|+.+++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCc
Confidence 88886666322 367788888888888764322 1210 0134777777777764
No 154
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.64 E-value=0.0012 Score=67.89 Aligned_cols=201 Identities=14% Similarity=0.075 Sum_probs=113.3
Q ss_pred cccchhhH---HHHHHHHHcC---CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCC---CCceEEEEEeCCccCHHHHHH
Q 042327 155 TVVGLEST---LQKVWRCIVE---DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPN---TFDCVIWVVVSKDLRVEYIQE 225 (911)
Q Consensus 155 ~~vGr~~~---~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~F~~~~wv~vs~~~~~~~~~~ 225 (911)
..+|-... ++++.+.+.. .+.+-+.|||..|.|||++++++........+ .--.++.|.....++...++.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 34554332 3334444433 35577999999999999999999887622111 011477788888999999999
Q ss_pred HHHHHcCCCCCcccccCHHHHHHHHHHHccC-CcEEEEEccccccc-----cccccc---ccCCCCCCCCcEEEEEcCch
Q 042327 226 VIAKQMGFFDDSWRAKSVEEKALEIFNSLSE-KKFVLLLDDVWERV-----DLTKVG---VPLPRPKNMASKVVFTTRSE 296 (911)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~-----~~~~~~---~~~~~~~~~~s~iivTtR~~ 296 (911)
.|+.+++.+... ......+.......++. +-=+||+|++.+.. .-..+. ..+. ..-.-+-|.+-|+.-
T Consensus 115 ~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 115 AILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccHHH
Confidence 999999987532 33444444444444433 33488999996521 111111 1111 222334455555543
Q ss_pred hHhhhcc-----ccceEEeccCCHHH-HHHHHHHHhcCcc--cCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 297 EVCGFME-----AHRKFKMVCLSDND-SWDLFQQKVGKEI--LNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 297 ~v~~~~~-----~~~~~~l~~L~~~e-~~~Lf~~~~~~~~--~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
--+-..+ -..++.++....++ ...|+......-. ..+.-...+++..|...++|+.=-+..+
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 2221111 12456666666544 4444433221111 0122234678999999999987544433
No 155
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.64 E-value=0.0044 Score=75.10 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=38.4
Q ss_pred CcccchhhHHHHHHHHHcC------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.+..++++.+++.. .+..++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999886642 234689999999999999999999987
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.63 E-value=0.0032 Score=62.83 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHH----HHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWR----CIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~----~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|.+..++.+++ .+......-+.+||..|+|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 568999999888865 3344566778899999999999999999988
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.60 E-value=0.00057 Score=75.19 Aligned_cols=171 Identities=18% Similarity=0.207 Sum_probs=95.5
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
.++.|.+..++++.+.+.- ...+.|.++|++|+|||++|+.+++.. ...| +.+..+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~s----- 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVGS----- 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehH-----
Confidence 4578999888888776531 235678999999999999999999986 2333 222111
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc------------c----cccccccCCC-CC
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV------------D----LTKVGVPLPR-PK 283 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~~~~-~~ 283 (911)
.+ ..... ......+...+.......+.+|+||+++... . +..+...+.. ..
T Consensus 214 -~l----~~k~~-------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 214 -EF----VQKYL-------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred -HH----HHHhc-------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 11 11110 0111112222222334578999999985320 0 1111111110 12
Q ss_pred CCCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 284 NMASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
..+..||.||...+... .+ .-...+.+...+.++..++|...........+.++. .+++.+.|.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~ 350 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKI 350 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCC
Confidence 34567888887665422 12 234568898888898888888766443322223333 455666654
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=4.4e-05 Score=89.47 Aligned_cols=125 Identities=16% Similarity=0.244 Sum_probs=70.9
Q ss_pred ccccceEeeccccccccc--C-CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc--CccccCCCCCC
Q 042327 511 EWENVRRLSLMQNEITNL--K-EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF--PLGISKLVSLQ 585 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l--p~~i~~l~~L~ 585 (911)
.+|.|++|.+.+-.+..- . -..++|+|+.||+++++++.+ .-++.+++|++|.+.+-.+..- -..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 356777777766544321 1 135677777777777777666 2267777777777777655532 23456777777
Q ss_pred EEeecCCCCccccc-------cccCCccccEEeccccccccccChhhhcCCccccEEEc
Q 042327 586 QLDLSYSSIKELPR-------ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRM 637 (911)
Q Consensus 586 ~L~L~~~~i~~lp~-------~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 637 (911)
.||+|...-..-+. .-..||+|+.||.+++..-..+-...+..-++|+.+.+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 77777754332221 11237777777777663322222222334444444443
No 159
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0017 Score=74.73 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=105.9
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
.+++|-+..++.+..++..++. +.+.++|+.|+||||+|+.+++... -...... ..+....+ -+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~C~~----C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGECSS----CKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCccchH----HHHHHcCCC
Confidence 3589999999999999987654 4688999999999999999988761 1110000 00000000 011111100
Q ss_pred CCC---CcccccCHHHHHHHH---HH-HccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhHhhh-
Q 042327 233 FFD---DSWRAKSVEEKALEI---FN-SLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRS-EEVCGF- 301 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~-~~v~~~- 301 (911)
... +.......++..... .. -..+++-++|+|++... ..+..+...+. .......+|++|.. ..+...
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEEecCChHHhHHHH
Confidence 000 000011222222211 11 12356668999999643 33444544443 22345566655543 333222
Q ss_pred ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHH
Q 042327 302 MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALIT 357 (911)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~ 357 (911)
.+....++..+++.++....+.+.+.......+ .+.+..|++.++|.+..+..
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 233457899999999998888887644321111 35667788999998754433
No 160
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.54 E-value=0.00047 Score=74.69 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=82.6
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...+..+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 4589999999999999887654 566679999999999999998875 222 23344433 122211111111000
Q ss_pred CCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--ccc-ccccccCCCCCCCCcEEEEEcCchhH-hh-hccccce
Q 042327 233 FFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDL-TKVGVPLPRPKNMASKVVFTTRSEEV-CG-FMEAHRK 307 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~-~~~~~~~~~~~~~~s~iivTtR~~~v-~~-~~~~~~~ 307 (911)
. ..+.+.+-++|+||++.. .+. ..+...+. ....++++|+||..... .. ..+....
T Consensus 94 ----------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 94 ----------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred ----------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhhceE
Confidence 0 001234568899999643 111 22222222 23456788888865431 11 1122346
Q ss_pred EEeccCCHHHHHHHHHH
Q 042327 308 FKMVCLSDNDSWDLFQQ 324 (911)
Q Consensus 308 ~~l~~L~~~e~~~Lf~~ 324 (911)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777777777766544
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.51 E-value=0.00046 Score=84.05 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=88.9
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCC--C-ceEEEEEeCCccCHHHHHHHHHHHc
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNT--F-DCVIWVVVSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F-~~~~wv~vs~~~~~~~~~~~i~~~l 231 (911)
.++||+++++++++.|......-+.++|.+|+|||++|+.++......... . +..+|. + +...+ ..
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~a-- 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LA-- 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hc--
Confidence 479999999999999987655566799999999999999998876211111 1 234443 1 11111 11
Q ss_pred CCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccccc---------ccccccccCCCCCCCCcEEEEEcCchhHhh-
Q 042327 232 GFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERV---------DLTKVGVPLPRPKNMASKVVFTTRSEEVCG- 300 (911)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~s~iivTtR~~~v~~- 300 (911)
+.. -....++....+.+.+ ..++.+|++|++.... +...+..+.. ....-++|-+|.......
T Consensus 249 g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--ARGELQCIGATTLDEYRKH 322 (821)
T ss_pred cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hCCCcEEEEeCCHHHHHHH
Confidence 100 0112333333343333 3568999999995321 1112222221 122345666665554321
Q ss_pred ------hccccceEEeccCCHHHHHHHHHHH
Q 042327 301 ------FMEAHRKFKMVCLSDNDSWDLFQQK 325 (911)
Q Consensus 301 ------~~~~~~~~~l~~L~~~e~~~Lf~~~ 325 (911)
.......+.+...+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1122356788889999988888754
No 162
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0013 Score=76.41 Aligned_cols=193 Identities=16% Similarity=0.123 Sum_probs=103.8
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|.+..++.+.+++..++. +.+.++|+.|+||||+|+.+.+...- ....+ ...++.-.....|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 4589999999999999987765 45689999999999999998887511 01000 000000011111111000
Q ss_pred CCC---CcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEE-EcCchhHhh-
Q 042327 233 FFD---DSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVF-TTRSEEVCG- 300 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iiv-TtR~~~v~~- 300 (911)
... +.......++ ++.+.+.+ .+++-++|+|+++.. .....+...+. .......+|+ ||....+..
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEEEeCChhhhhHH
Confidence 000 0000011111 11222221 244558899999643 22334443333 2223455554 444444432
Q ss_pred hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh-hHHHHHH
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP-LALITIG 359 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P-lai~~~~ 359 (911)
..+....+++++++.++....+...+.......+ .+....|++.++|.. .|+..+-
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2334567889999999988888776644321111 245678889999865 4554443
No 163
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=1e-05 Score=71.32 Aligned_cols=89 Identities=28% Similarity=0.389 Sum_probs=79.6
Q ss_pred ccceEeecccccccccCC-C-CCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeec
Q 042327 513 ENVRRLSLMQNEITNLKE-I-PTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLS 590 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 590 (911)
.++..++|++|.+..+|. | ..++.+++|++.+|.+.++|.+ +..++.|+.|+++.|.+...|..+..|.+|-+|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 367788999999998865 3 5677999999999999999999 888999999999999999999999999999999999
Q ss_pred CCCCcccccccc
Q 042327 591 YSSIKELPRELY 602 (911)
Q Consensus 591 ~~~i~~lp~~~~ 602 (911)
+|.+..+|.++.
T Consensus 132 ~na~~eid~dl~ 143 (177)
T KOG4579|consen 132 ENARAEIDVDLF 143 (177)
T ss_pred CCccccCcHHHh
Confidence 999999987644
No 164
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.49 E-value=0.0011 Score=75.55 Aligned_cols=158 Identities=18% Similarity=0.104 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHcc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS 255 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (911)
..+.|+|..|+|||.|++.+++.... ...-..+++++. .++..++...+.. ...+ .+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~~~----~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GKGD----SFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------ccHH----HHHHHhh
Confidence 46899999999999999999998721 111234556643 3344444433321 1111 2223333
Q ss_pred CCcEEEEEcccccc---cccc-cccccCCCCCCCCcEEEEEcCch---------hHhhhccccceEEeccCCHHHHHHHH
Q 042327 256 EKKFVLLLDDVWER---VDLT-KVGVPLPRPKNMASKVVFTTRSE---------EVCGFMEAHRKFKMVCLSDNDSWDLF 322 (911)
Q Consensus 256 ~k~~LlVlDdv~~~---~~~~-~~~~~~~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 322 (911)
+ -=+|||||+... ..|. .+...+......+..|||||+.. .+.+.+...-.+.++..+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 247889999643 1122 12222211123356788888753 23344556678999999999999999
Q ss_pred HHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 323 QQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
.+++.......+ +++..-|++.+.+..-.+
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 998865443322 356677777776654333
No 165
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.0002 Score=77.16 Aligned_cols=70 Identities=21% Similarity=0.364 Sum_probs=49.6
Q ss_pred ccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeecccccccccccc
Q 042327 695 SCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLV 774 (911)
Q Consensus 695 ~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~ 774 (911)
..+..|.+++| .++.++ .+ .++|+.|.+.+|..++.++. . .+++|++|++++|..+..+|
T Consensus 52 ~~l~~L~Is~c-~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~-~-----------LP~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP--VL--PNELTEITIENCNNLTTLPG-S-----------IPEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred cCCCEEEeCCC-CCcccC--CC--CCCCcEEEccCCCCcccCCc-h-----------hhhhhhheEccCcccccccc---
Confidence 57888889888 566554 22 25799999999888765432 1 24689999999987776554
Q ss_pred cCCCccEEEEec
Q 042327 775 FAPNLKYAEILN 786 (911)
Q Consensus 775 ~l~~L~~L~L~~ 786 (911)
++|+.|+|..
T Consensus 112 --~sLe~L~L~~ 121 (426)
T PRK15386 112 --ESVRSLEIKG 121 (426)
T ss_pred --cccceEEeCC
Confidence 4677777754
No 166
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.0017 Score=71.83 Aligned_cols=136 Identities=18% Similarity=0.139 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCCc
Q 042327 159 LESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDDS 237 (911)
Q Consensus 159 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~ 237 (911)
+..-..++.+.+..... ++.|.|+-++||||+++.+.... ... .+++..-+.. +..++
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-------------- 80 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-------------- 80 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH--------------
Confidence 34455566666554433 99999999999999997777665 222 4555432211 11111
Q ss_pred ccccCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHh-----hh-ccccceEEec
Q 042327 238 WRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVC-----GF-MEAHRKFKMV 311 (911)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~-----~~-~~~~~~~~l~ 311 (911)
.+......+.-..++..++||.|....+|+.....+. +.++. +|++|+-+.... .. .+....+++.
T Consensus 81 ------~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 81 ------LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred ------HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 1111111111122788999999999999998776666 44444 899999877652 22 2335678999
Q ss_pred cCCHHHHHHHHH
Q 042327 312 CLSDNDSWDLFQ 323 (911)
Q Consensus 312 ~L~~~e~~~Lf~ 323 (911)
||+..|...+-.
T Consensus 153 PlSF~Efl~~~~ 164 (398)
T COG1373 153 PLSFREFLKLKG 164 (398)
T ss_pred CCCHHHHHhhcc
Confidence 999999876543
No 167
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00014 Score=68.82 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=26.0
Q ss_pred ccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccC-CCCCCEEeecCCCCcc
Q 042327 537 LLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISK-LVSLQQLDLSYSSIKE 596 (911)
Q Consensus 537 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~-l~~L~~L~L~~~~i~~ 596 (911)
...++|++|.+..++. |..++.|..|.|.+|.|+.+-..+.. +++|..|.|.+|+|.+
T Consensus 44 ~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred cceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence 3445555554444332 44444555555555555444333322 2334444444444443
No 168
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0018 Score=70.09 Aligned_cols=264 Identities=15% Similarity=0.094 Sum_probs=134.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
....+.|+|..|.|||.|++++.+.. .........+.++. +.....+...+.. ......++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~s----e~f~~~~v~a~~~-----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTS----EDFTNDFVKALRD-----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccH----HHHHHHHHHHHHh-----------hhHHHHHHh
Confidence 47899999999999999999999997 23333222232222 2233333333221 122334444
Q ss_pred ccCCcEEEEEccccccc---ccc-cccccCCCCCCCCcEEEEEcCchh---------HhhhccccceEEeccCCHHHHHH
Q 042327 254 LSEKKFVLLLDDVWERV---DLT-KVGVPLPRPKNMASKVVFTTRSEE---------VCGFMEAHRKFKMVCLSDNDSWD 320 (911)
Q Consensus 254 l~~k~~LlVlDdv~~~~---~~~-~~~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~ 320 (911)
. .-=++++||++-.. .|+ ++...|..-...|..||+|++... ..+.+...-.+.+.+.+.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 4 23388899996422 222 222222211233448999996542 34556667889999999999999
Q ss_pred HHHHHhcCcccCCCcc-HHHHHHHHHHHcCCChhHHHHHHhhh-cC--CCCHHHHHHHHHHHhhcccCCCCCCCcccchh
Q 042327 321 LFQQKVGKEILNSHPD-ILELAQTVARECGGLPLALITIGRAM-AC--KKTPEEWRYAIQLLSSSASQFPGFGEGVYPLL 396 (911)
Q Consensus 321 Lf~~~~~~~~~~~~~~-l~~~~~~i~~~c~g~Plai~~~~~~l-~~--~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l 396 (911)
++.+++.......+++ ..-++..+-+-..-+.-|+..+...- .. .-+.+.-+.++..+...... . .+..+
T Consensus 252 iL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~---i--tie~I- 325 (408)
T COG0593 252 ILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK---I--TIEDI- 325 (408)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc---C--CHHHH-
Confidence 9999876554333332 22222222222222333332222111 11 12333333333322221110 0 01111
Q ss_pred hhccCCCCchhhhhHhhhhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhhHHHHHHHHHHhccccccCCCeeecch
Q 042327 397 KFSYDSLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQGYFILGILLHACLLEEGGDGEVKMHD 476 (911)
Q Consensus 397 ~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~mhd 476 (911)
.+..--| |.|+.+++.. =-.......+.+.+.....+|.+.|+-+.+..=. +-|.
T Consensus 326 -----------~~~Va~~-------y~v~~~dl~s------~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg-rdHt 380 (408)
T COG0593 326 -----------QKIVAEY-------YNVKVSDLLS------KSRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG-RDHT 380 (408)
T ss_pred -----------HHHHHHH-------hCCCHHHhhc------cccccccchHHHHHHHHHHHHccCcHHHHHHHhC-CCcc
Confidence 1111111 2333333321 0011234456778888889999999988874333 6777
Q ss_pred hHHHHHHHHHhh
Q 042327 477 VIRDMSLWIACD 488 (911)
Q Consensus 477 lv~~~a~~~~~~ 488 (911)
.|-...+.|...
T Consensus 381 TV~~a~~kI~~~ 392 (408)
T COG0593 381 TVLHAVRKIEQL 392 (408)
T ss_pred HHHHHHHHHHHH
Confidence 666666656543
No 169
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0036 Score=72.41 Aligned_cols=190 Identities=18% Similarity=0.128 Sum_probs=103.1
Q ss_pred CcccchhhHHHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++++|.+..++.+.+++..++ .+.+.++|+.|+||||+|+.+..... -...-+ ..+++.-...+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 458999999999999998764 45577899999999999999877651 111000 001111111122211110
Q ss_pred CCC---CcccccCHHHHHHHHHHH-----ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEE-EcCchhHhh-
Q 042327 233 FFD---DSWRAKSVEEKALEIFNS-----LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVF-TTRSEEVCG- 300 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iiv-TtR~~~v~~- 300 (911)
... +.......++. +.+.+. ..+++-++|+|++... ..+..+...+. .......+|+ ||....+..
T Consensus 88 ~dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcHH
Confidence 000 00001112211 122222 2345668899999643 23444444433 2222344444 444443322
Q ss_pred hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHH
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALI 356 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~ 356 (911)
..+....+...+++.++....+...+.......+ .+....|++.++|.+..+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2233457889999999998888887654331111 2456788888988775443
No 170
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.43 E-value=3.8e-05 Score=88.91 Aligned_cols=109 Identities=23% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCCCccEEEccCCC-CCCcC-hhHHhcCCcccEEEccCC--CCccc----CccccCCCCCCEEeecCCC-Ccc--ccccc
Q 042327 533 TCPHLLTLFLDNNE-SLKIP-NDFFQYMHSLKVLNLSRI--KLKSF----PLGISKLVSLQQLDLSYSS-IKE--LPREL 601 (911)
Q Consensus 533 ~~~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~L~~~--~i~~l----p~~i~~l~~L~~L~L~~~~-i~~--lp~~~ 601 (911)
.++.|+.|.+.++. +.... ..+...+++|+.|+++++ .+... +.....+.+|+.|+++++. ++. +..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36777777777763 33321 233556777777777763 11111 1223345666666666664 442 11111
Q ss_pred cCCccccEEeccccccccccCh-hhhcCCccccEEEccccc
Q 042327 602 YALVNLKCLNLEHAEELITIPQ-QVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 602 ~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 641 (911)
..+++|++|.+.+|..++.-.- .+..++++|++|++++|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2255666666655543222111 112455566666666553
No 171
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.40 E-value=0.0011 Score=74.64 Aligned_cols=162 Identities=13% Similarity=0.172 Sum_probs=89.2
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCceEEEEEeCCc
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGP---NTFDCVIWVVVSKD 217 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~vs~~ 217 (911)
.++.|.+..++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... ..+....|+.++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch
Confidence 3477899998888776531 134568999999999999999999987 211 01223445544432
Q ss_pred cCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH-ccCCcEEEEEccccccc---------cc-----ccccccCCC-
Q 042327 218 LRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS-LSEKKFVLLLDDVWERV---------DL-----TKVGVPLPR- 281 (911)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~---------~~-----~~~~~~~~~- 281 (911)
. ++...... .......+....++. -.+++++|+||+++... +. ..+...+..
T Consensus 261 e--------Ll~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 E--------LLNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred h--------hcccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 1 11110000 000111111222221 13578999999996421 11 112111210
Q ss_pred CCCCCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcC
Q 042327 282 PKNMASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGK 328 (911)
Q Consensus 282 ~~~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (911)
....+..||.||...+... .. .-...|+++..+.++..++|..+...
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1123445666665554321 11 22456899999999999999988754
No 172
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.38 E-value=0.0024 Score=73.49 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=91.8
Q ss_pred CcccchhhHHHHHHHHHc---C---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIV---E---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ...| +.++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~~---- 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISGS---- 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccHH----
Confidence 357888877666654332 1 123468899999999999999999886 2222 222211
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc----c--------ccc----ccccCCC-CCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV----D--------LTK----VGVPLPR-PKN 284 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~--------~~~----~~~~~~~-~~~ 284 (911)
++. ... .......+...+.......+.+|+|||++... . +.. +...+.. ...
T Consensus 123 ~~~----~~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFV----EMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHH----HHH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111 110 01112222223333334567899999995421 0 111 1111110 122
Q ss_pred CCcEEEEEcCchhHhh-----hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 285 MASKVVFTTRSEEVCG-----FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 285 ~~s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
.+-.||.||....... .-.....+.++..+.++-.+++.............+ ...+++.+.|.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGF 259 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCC
Confidence 3455666776543211 112345788888888888899888765432111112 34677777773
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.38 E-value=0.0011 Score=80.64 Aligned_cols=154 Identities=17% Similarity=0.219 Sum_probs=87.0
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccC--CCC-CceE-EEEEeCCccCHHHHHHHHHHH
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEG--PNT-FDCV-IWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~-F~~~-~wv~vs~~~~~~~~~~~i~~~ 230 (911)
.++||+.++.++++.|......-+.++|.+|+||||+|+.+....... ... .... +++..+. +. ..
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~----ag 248 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV----AG 248 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh----hc
Confidence 489999999999999987666677799999999999999999886210 000 1222 2332221 10 00
Q ss_pred cCCCCCcccccCHHHHHHHHHHHc--cCCcEEEEEccccccc---------ccccccccCCCCCCCCcEEEEEcCchhHh
Q 042327 231 MGFFDDSWRAKSVEEKALEIFNSL--SEKKFVLLLDDVWERV---------DLTKVGVPLPRPKNMASKVVFTTRSEEVC 299 (911)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~s~iivTtR~~~v~ 299 (911)
.. .....++....+.+.+ .+++.+|++|++.... +-..+..+.. ....-++|-||...+..
T Consensus 249 ~~------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 249 AK------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYR 320 (857)
T ss_pred cc------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHHH
Confidence 00 0112223333333322 2578999999996431 1122222322 12234566666554431
Q ss_pred h-------hccccceEEeccCCHHHHHHHHHHHh
Q 042327 300 G-------FMEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 300 ~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
. .......+.+..-+.++...++....
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 11122356677778899999887654
No 174
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00075 Score=80.08 Aligned_cols=155 Identities=17% Similarity=0.285 Sum_probs=90.0
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CceEEEEEeCCccCHHHHHHHHHHHc
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNT---FDCVIWVVVSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---F~~~~wv~vs~~~~~~~~~~~i~~~l 231 (911)
.++||+++++++++.|......-+.++|.+|+|||++|+.++......... .++.+|.. +... ++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc--
Confidence 479999999999999887555566789999999999999998875221112 24455531 1111 110
Q ss_pred CCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEcccccc----------cccccccccCCCCCCCCcEEEEEcCchhHhh
Q 042327 232 GFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWER----------VDLTKVGVPLPRPKNMASKVVFTTRSEEVCG 300 (911)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~ 300 (911)
+.. -..+.+.....+.+.+ +.++.+|++|++... .+...+..++. ....-+||-+|...+...
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHH
Confidence 000 0112233333333333 346789999999632 11222222322 122345665555444211
Q ss_pred -------hccccceEEeccCCHHHHHHHHHHHh
Q 042327 301 -------FMEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 301 -------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
..+.-..+.+++.+.+++.+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11122578999999999999998654
No 175
>PRK08118 topology modulation protein; Reviewed
Probab=97.37 E-value=0.00011 Score=70.62 Aligned_cols=35 Identities=34% Similarity=0.678 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCceEEE
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGP-NTFDCVIW 211 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~w 211 (911)
..|.|+|++|+||||||+.+++.. ... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhc
Confidence 358999999999999999999997 333 46787776
No 176
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.37 E-value=0.00022 Score=75.42 Aligned_cols=290 Identities=17% Similarity=0.202 Sum_probs=170.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-ceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF-DCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
..+-+.++|.|||||||++-.+.. . ...| +.+.++....-.+...+.-.....++... .+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 457899999999999999999888 4 3345 45666766666677777666676677643 222334445666
Q ss_pred HccCCcEEEEEccccccccc-ccccccCCCCCCCCcEEEEEcCchhHhhhccccceEEeccCCHH-HHHHHHHHHhcCcc
Q 042327 253 SLSEKKFVLLLDDVWERVDL-TKVGVPLPRPKNMASKVVFTTRSEEVCGFMEAHRKFKMVCLSDN-DSWDLFQQKVGKEI 330 (911)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~~~-~~~~~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~ 330 (911)
...++|.++|+||-.+..+- ......+. .+...-.|+.|+|.... ........+.+|+.. ++-++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all-~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALL-GACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHH-ccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 77789999999998543221 01111111 23334467777775432 233456677888754 78889877653221
Q ss_pred --cCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHHHHHHH----HHhhcccCCCCCCCcccchhhhccCCCC
Q 042327 331 --LNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYAIQ----LLSSSASQFPGFGEGVYPLLKFSYDSLP 404 (911)
Q Consensus 331 --~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~----~l~~~~~~~~~~~~~v~~~l~~sy~~L~ 404 (911)
.-....-......|.++.+|.|++|...++..+.- ...+--..++ .+........--+......+.+||.-|.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 11122234577899999999999999998877652 2222222111 1111100000001256788899999998
Q ss_pred chhhhhHhhhhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhhHHHHHHHHHHhcccccc---CCCeeecchhHHHH
Q 042327 405 NDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQGYFILGILLHACLLEEG---GDGEVKMHDVIRDM 481 (911)
Q Consensus 405 ~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mhdlv~~~ 481 (911)
. -.+.-|.-++.|...+.-. ...|.+-|-... ........-+..++++++..-. ....++.-+.++.+
T Consensus 239 g-we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Y 309 (414)
T COG3903 239 G-WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRY 309 (414)
T ss_pred h-HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 7 6788888888887766544 233444433211 1222333334556677665542 23344555555555
Q ss_pred HHHHH
Q 042327 482 SLWIA 486 (911)
Q Consensus 482 a~~~~ 486 (911)
+...-
T Consensus 310 alaeL 314 (414)
T COG3903 310 ALAEL 314 (414)
T ss_pred HHHHH
Confidence 55443
No 177
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.34 E-value=0.0058 Score=73.33 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=40.1
Q ss_pred CCcccchhhHHHHHHHHHcC------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 153 DPTVVGLESTLQKVWRCIVE------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.+.+|.++.+++|++++.. ....++.++|++|+||||+|+.++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999988862 245689999999999999999999876
No 178
>PRK08116 hypothetical protein; Validated
Probab=97.32 E-value=0.00031 Score=73.21 Aligned_cols=102 Identities=24% Similarity=0.240 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHcc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS 255 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (911)
..+.++|..|+|||+||.++++... .....+++++ ..+++..|........ .....+ +.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~~~~----~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KEDENE----IIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----cccHHH----HHHHhc
Confidence 4688999999999999999999972 2233456664 3445555555443211 112222 333444
Q ss_pred CCcEEEEEcccc--ccccccc--ccccCCCCCCCCcEEEEEcCc
Q 042327 256 EKKFVLLLDDVW--ERVDLTK--VGVPLPRPKNMASKVVFTTRS 295 (911)
Q Consensus 256 ~k~~LlVlDdv~--~~~~~~~--~~~~~~~~~~~~s~iivTtR~ 295 (911)
+-. ||||||+. ...+|.. +...+...-..+..+|+||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 89999993 2334432 221121111345678999874
No 179
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0077 Score=64.25 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=107.2
Q ss_pred cccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccC-------------CCCCceEEEEEeCCccCH
Q 042327 155 TVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEG-------------PNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------~~~F~~~~wv~vs~~~~~ 220 (911)
.++|.+..++.+.+.+..++. +...++|+.|+||+++|..+.+..... ..|-| ..|+.-....+-
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccc
Confidence 579999999999999988765 799999999999999998887765111 01112 233321100000
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEc
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTT 293 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTt 293 (911)
..+-..-++..+........-..++ ++.+.+.+ .+++-++|+|+++.. .....+...+.... + +.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~-~~fILi~ 160 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-N-GTLILIA 160 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-C-CeEEEEE
Confidence 0000111111111000001111222 23344333 356678999998643 23333444443122 3 3455554
Q ss_pred Cch-hHhh-hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 294 RSE-EVCG-FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 294 R~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
.+. .+.. ..+....+++.++++++..+.+.+....+. .......++..++|.|..+..+
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 443 3322 234457899999999999999988643221 0111357889999999765543
No 180
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.28 E-value=0.0017 Score=79.47 Aligned_cols=154 Identities=13% Similarity=0.186 Sum_probs=88.0
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CceEEEEEeCCccCHHHHHHHHHHH
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNT----FDCVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
.++||+.++.+++..|......-+.++|.+|+|||++|+.+..+... ... ....+|.. +...+ ...
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l----~a~ 243 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGAL----IAG 243 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHH----hhc
Confidence 38999999999999997766666779999999999999999887621 110 12233321 11111 100
Q ss_pred cCCCCCcccccCHHHHHHHHHHHcc--CCcEEEEEccccccc---------ccccccccCCCCCCCCcEEEEEcCchhHh
Q 042327 231 MGFFDDSWRAKSVEEKALEIFNSLS--EKKFVLLLDDVWERV---------DLTKVGVPLPRPKNMASKVVFTTRSEEVC 299 (911)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~s~iivTtR~~~v~ 299 (911)
.. .....+.....+.+.+. +++.+|++|++.... +...+..+.. ....-++|-+|......
T Consensus 244 ~~------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 244 AK------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYR 315 (852)
T ss_pred ch------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHH
Confidence 00 01122333333333332 468999999996421 1112222222 12234556555544431
Q ss_pred h-------hccccceEEeccCCHHHHHHHHHHHh
Q 042327 300 G-------FMEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 300 ~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
. ..+....+.++..+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 11223468899999999999987654
No 181
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.23 E-value=0.00082 Score=67.55 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEe
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVV 214 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v 214 (911)
-.++|+|..|+||||++..+.... ...|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367899999999999999999887 678888877754
No 182
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=2.4e-05 Score=77.25 Aligned_cols=101 Identities=24% Similarity=0.191 Sum_probs=67.6
Q ss_pred CCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccc--cccCCccccEEe
Q 042327 534 CPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPR--ELYALVNLKCLN 611 (911)
Q Consensus 534 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~ 611 (911)
+.+.+.|++.+|.+++|. ++.+|+.|++|.|+-|.|+++. .+..|++|+.|+|+.|.|..+-+ -+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 345566667777666653 4677888888888888887774 46677888888888887775542 345677777777
Q ss_pred ccccccccccCh----hhhcCCccccEEEc
Q 042327 612 LEHAEELITIPQ----QVISNFSRLHVLRM 637 (911)
Q Consensus 612 l~~~~~l~~lp~----~~i~~l~~L~~L~l 637 (911)
|..|+..+.-+. .++.-|++|+.|+-
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccC
Confidence 777665544432 34566777777753
No 183
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0069 Score=64.98 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=58.8
Q ss_pred CCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchh-Hh-hhccccceEEeccCCHHHHHHHHHHHhcCccc
Q 042327 256 EKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEE-VC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEIL 331 (911)
Q Consensus 256 ~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 331 (911)
+++-++|+|+++.. .....+...+. ....++.+|+||.+.. +. +..+....+.+.+++.+++.+.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC-
Confidence 34445678999643 33344444443 2234667777776654 32 2233456799999999999999877542111
Q ss_pred CCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 332 NSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 332 ~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
.+.+..++..++|.|..+..+
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 233557789999999866555
No 184
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0031 Score=65.38 Aligned_cols=195 Identities=19% Similarity=0.253 Sum_probs=112.1
Q ss_pred cccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 155 TVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
.+=|-++.+++|.+.+.- +..+-|.++|++|.|||-||++|+++. ...| +.|..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----
Confidence 355788888888887642 356788999999999999999999986 3334 333332
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHcc-CCcEEEEEccccccc----------------ccccccccCCC-CC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS-EKKFVLLLDDVWERV----------------DLTKVGVPLPR-PK 283 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------------~~~~~~~~~~~-~~ 283 (911)
++.+..-. .-..+.+.+++.-+ ..+.+|.+|.++... ..-++...+.. +.
T Consensus 220 ----ElVqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ----ELVQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ----HHHHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 22222111 11334555555544 467999999985310 01112111210 23
Q ss_pred CCCcEEEEEcCchhHhh--hcc---ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh----hH
Q 042327 284 NMASKVVFTTRSEEVCG--FME---AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP----LA 354 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P----la 354 (911)
...-|||.+|...++.. .+. -++.++++.-+.+.-.++|.-++.......+-+++. +++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCchHHHHH
Confidence 34679999998777632 122 345778875555555677777776554344445554 555666543 34
Q ss_pred HHHHHhhhcCC--C---CHHHHHHHHHH
Q 042327 355 LITIGRAMACK--K---TPEEWRYAIQL 377 (911)
Q Consensus 355 i~~~~~~l~~~--~---~~~~w~~~~~~ 377 (911)
|.+=|++++-+ + +.+.+..+.+.
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 44546655421 1 34455554443
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.15 E-value=0.0012 Score=61.73 Aligned_cols=88 Identities=23% Similarity=0.111 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHcc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS 255 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (911)
..+.|+|++|+||||+|+.++... . .....++++..+........... ....... ............+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL-G--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc-C--CCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987 2 22234555555443332222111 0001000 012223333444444444
Q ss_pred CC-cEEEEEccccccc
Q 042327 256 EK-KFVLLLDDVWERV 270 (911)
Q Consensus 256 ~k-~~LlVlDdv~~~~ 270 (911)
.. ..++++|++....
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 44 4899999997643
No 186
>PRK07261 topology modulation protein; Provisional
Probab=97.15 E-value=0.001 Score=64.44 Aligned_cols=65 Identities=23% Similarity=0.468 Sum_probs=42.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCC-CCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHcc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKFLEGP-NTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS 255 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (911)
.|.|+|++|+||||||+.+.... ... -+.|...|-.. +...+.++....+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 57 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLL 57 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHh
Confidence 48999999999999999998775 221 24455555221 122334555666666666
Q ss_pred CCcEEEEEcccc
Q 042327 256 EKKFVLLLDDVW 267 (911)
Q Consensus 256 ~k~~LlVlDdv~ 267 (911)
+.+ .|+|+..
T Consensus 58 ~~~--wIidg~~ 67 (171)
T PRK07261 58 KHD--WIIDGNY 67 (171)
T ss_pred CCC--EEEcCcc
Confidence 666 6778774
No 187
>CHL00176 ftsH cell division protein; Validated
Probab=97.09 E-value=0.0046 Score=72.15 Aligned_cols=170 Identities=13% Similarity=0.150 Sum_probs=94.8
Q ss_pred CcccchhhHHHHHHH---HHcCC---------CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWR---CIVED---------PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~---~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.++.++++.+ .+... ..+-|.++|++|+|||++|+.+++.. ... ++.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 457888877666544 33331 23568999999999999999999876 222 2333221
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc------------c----cccccccCCC-CCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV------------D----LTKVGVPLPR-PKN 284 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~~~~-~~~ 284 (911)
++.. .. ...........+.......+.+|+|||++... . +..+...+.. ...
T Consensus 251 ~f~~----~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVE----MF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHH----Hh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1110 00 00111222333344446778999999995321 1 1111111110 123
Q ss_pred CCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCC
Q 042327 285 MASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGG 350 (911)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g 350 (911)
.+-.||.||...+... .. .....+.+...+.++-.++++.++....... ......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCC
Confidence 4556777776654322 11 2346788888899999999988775432111 2234567777777
No 188
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00024 Score=70.40 Aligned_cols=80 Identities=33% Similarity=0.337 Sum_probs=36.2
Q ss_pred CCCccEEEccCCCCCCcChhHHhcCCcccEEEccCC--CCc-ccCccccCCCCCCEEeecCCCCcccc--ccccCCcccc
Q 042327 534 CPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRI--KLK-SFPLGISKLVSLQQLDLSYSSIKELP--RELYALVNLK 608 (911)
Q Consensus 534 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~--~i~-~lp~~i~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~ 608 (911)
+..|..|.+.++.++.+.. |..|++|++|.++.| .+. .++..+.++++|++|++++|+|+.+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444444444443333221 334555555555555 333 33333344455555555555544211 1233444555
Q ss_pred EEecccc
Q 042327 609 CLNLEHA 615 (911)
Q Consensus 609 ~L~l~~~ 615 (911)
.|++.+|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 5555554
No 189
>PRK12377 putative replication protein; Provisional
Probab=97.09 E-value=0.0011 Score=67.69 Aligned_cols=74 Identities=26% Similarity=0.283 Sum_probs=45.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
+...+.++|..|+|||+||.++++... .....++++++. ++...|...... ...... +.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~~----~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGEK----FLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHHH----HHHH
Confidence 346789999999999999999999982 233345666543 344444433321 111122 2222
Q ss_pred ccCCcEEEEEcccc
Q 042327 254 LSEKKFVLLLDDVW 267 (911)
Q Consensus 254 l~~k~~LlVlDdv~ 267 (911)
+ .+-=||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 345689999993
No 190
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.09 E-value=0.00085 Score=61.97 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 042327 178 IGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|.|+|+.|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 191
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.0032 Score=67.29 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=65.5
Q ss_pred HHHHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCce-EEEEEeCC-ccCHHHHHHHHHHHcCCCCCccc
Q 042327 163 LQKVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDC-VIWVVVSK-DLRVEYIQEVIAKQMGFFDDSWR 239 (911)
Q Consensus 163 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~ 239 (911)
..++++.+.. +.-..+.|+|..|+|||||++.+++... .++-+. ++|+.+.+ ...+.++.+.+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3456776654 3445679999999999999999988762 223344 46766666 45788999999887765331111
Q ss_pred cc---CHHHHHHHHHHHc--cCCcEEEEEcccc
Q 042327 240 AK---SVEEKALEIFNSL--SEKKFVLLLDDVW 267 (911)
Q Consensus 240 ~~---~~~~~~~~l~~~l--~~k~~LlVlDdv~ 267 (911)
.. ........+.+++ ++++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 10 1111122222333 5899999999993
No 192
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.028 Score=56.04 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=100.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEe-CCccCHHHHHHHHHHHcCCCCCcccc-cCHHHHHHHH
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVV-SKDLRVEYIQEVIAKQMGFFDDSWRA-KSVEEKALEI 250 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l 250 (911)
++..++.++|.-|+|||+++|.+.... . =+.++-|.+ ........+...|...+.... .+.. ...++..+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N----EDQVAVVVIDKPTLSDATLLEAIVADLESQP-KVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C----CCceEEEEecCcchhHHHHHHHHHHHhccCc-cchhHHHHHHHHHHH
Confidence 456799999999999999999655554 1 111222333 334567788888888887621 1111 1122333333
Q ss_pred HHHc-cCCc-EEEEEcccccc--cccccccccCC--CCCCCCcEEEEEcC--------chhHhhhccccce-EEeccCCH
Q 042327 251 FNSL-SEKK-FVLLLDDVWER--VDLTKVGVPLP--RPKNMASKVVFTTR--------SEEVCGFMEAHRK-FKMVCLSD 315 (911)
Q Consensus 251 ~~~l-~~k~-~LlVlDdv~~~--~~~~~~~~~~~--~~~~~~s~iivTtR--------~~~v~~~~~~~~~-~~l~~L~~ 315 (911)
.+.. +++| ..+++||.... ..++.++.... .+...--+|+..-. -......-..... |.+.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 3333 5667 89999998542 11222111100 01111111222211 1111111111223 89999999
Q ss_pred HHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHh
Q 042327 316 NDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGR 360 (911)
Q Consensus 316 ~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~ 360 (911)
++...++..+........+---.+....|.....|.|.+|..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999888775443111111234566788899999999987763
No 193
>PRK10536 hypothetical protein; Provisional
Probab=97.05 E-value=0.0037 Score=63.20 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=39.8
Q ss_pred ccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEE
Q 042327 156 VVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWV 212 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 212 (911)
+.++......++.++.+. ..|.+.|.+|+|||+||.++..+. -..+.|+.++-+
T Consensus 57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI~ 110 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIVT 110 (262)
T ss_pred ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEEe
Confidence 567777888888888664 499999999999999999988863 112345544443
No 194
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.0026 Score=73.60 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=38.9
Q ss_pred CcccchhhHHHHHHHHHcCC-----CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVED-----PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++++|-++.++++..++... ..+++.|+|+.|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999998888652 34679999999999999999999876
No 195
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.015 Score=65.74 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=50.0
Q ss_pred CCcccchhhHHHHHHHHHcC------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIVE------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYI 223 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 223 (911)
+++.+|.++.+++|++++.- -+-++++.+|++|+|||.+|+.|+... ...| +-++|..-.|+.+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhh
Confidence 34569999999999998853 266899999999999999999999987 3333 23456665565554
No 196
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.97 E-value=0.019 Score=61.45 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeC
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVS 215 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs 215 (911)
...+.++|..|+|||+||..+++... ..-..++++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEHH
Confidence 37799999999999999999999872 222356676543
No 197
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.009 Score=64.89 Aligned_cols=145 Identities=19% Similarity=0.197 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
....+.+.|++|+|||+||..++..- .|..+--++...- ...++......+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~m---------------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDM---------------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHc---------------------cCccHHHHHHHHHHH
Confidence 56778899999999999999988764 4654433321110 122333333444333
Q ss_pred ----ccCCcEEEEEcccccccccccccccCC------------C--CCCCCcEEEEEcCchhHhhhccc----cceEEec
Q 042327 254 ----LSEKKFVLLLDDVWERVDLTKVGVPLP------------R--PKNMASKVVFTTRSEEVCGFMEA----HRKFKMV 311 (911)
Q Consensus 254 ----l~~k~~LlVlDdv~~~~~~~~~~~~~~------------~--~~~~~s~iivTtR~~~v~~~~~~----~~~~~l~ 311 (911)
-+..=-.||+||+....||-.++..+. . ..++.--|+-||....|...|+- ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 355667999999988778777654321 1 22233345556666777776652 4578999
Q ss_pred cCCH-HHHHHHHHHHhcCcccCCCccHHHHHHHHHHHc
Q 042327 312 CLSD-NDSWDLFQQKVGKEILNSHPDILELAQTVAREC 348 (911)
Q Consensus 312 ~L~~-~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c 348 (911)
.++. ++..+.++..-- -.+.+.+.++.+...+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 9987 777777776431 12334556666776666
No 198
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.028 Score=59.82 Aligned_cols=181 Identities=10% Similarity=0.051 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCc-----eEEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 160 ESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFD-----CVIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 160 ~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-----~~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
+...+.+...+..+++ +.+.++|+.|+||+++|..++....- ..... ++-|+.....+|...+. ..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~ 81 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FI 81 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEe-------cC
Confidence 3456677777776655 46889999999999999988776511 00000 00011111111110000 00
Q ss_pred CCCcc----cccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCch-hHh-h
Q 042327 234 FDDSW----RAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSE-EVC-G 300 (911)
Q Consensus 234 ~~~~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~-~v~-~ 300 (911)
+.+.. .....++ ++.+.+.+ .+++-++|+|+++.. ..-..+...+. ....++.+|++|.+. .+. +
T Consensus 82 p~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred CCcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEECChhhCchH
Confidence 00000 0011222 22233322 245668999999643 22222333333 223466666666654 333 2
Q ss_pred hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
..+....+.+.+++.+++.+.+.+. +. + +..+..++..++|.|+.+..+.
T Consensus 160 IrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 2334568899999999998888653 11 1 1235678999999998776554
No 199
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.035 Score=59.14 Aligned_cols=175 Identities=12% Similarity=0.120 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhccc-C-CC-C--Cce--EEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 162 TLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLE-G-PN-T--FDC--VIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 162 ~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-~-~~-~--F~~--~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
.-+.+.+.+..++. +.+.+.|+.|+||+++|+.++....- . .. . -.| +-++.....+|...+. .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE--------P 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------c
Confidence 44566777766554 67779999999999999998776511 0 00 0 000 0011111111111000 0
Q ss_pred CCCcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCch-hHh-hhccc
Q 042327 234 FDDSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSE-EVC-GFMEA 304 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~-~v~-~~~~~ 304 (911)
.. ...-..++.. .+.+.+ .+++=++|+|+++.. .....+...+. ....++.+|++|.+. .+. +..+.
T Consensus 82 ~~--~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 82 ID--NKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred cc--CCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHhh
Confidence 00 0011222222 222222 355668889999653 23333433343 233456666666654 343 22334
Q ss_pred cceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHH
Q 042327 305 HRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALI 356 (911)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~ 356 (911)
...+.+.++++++..+.+......+. ..+...+..++|.|..+.
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~~~--------~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSAEI--------SEILTALRINYGRPLLAL 201 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhccCh--------HHHHHHHHHcCCCHHHHH
Confidence 57899999999999988887642211 125567888999996443
No 200
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.02 Score=61.89 Aligned_cols=161 Identities=7% Similarity=-0.015 Sum_probs=83.7
Q ss_pred cccc-hhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 155 TVVG-LESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 155 ~~vG-r~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
.++| -+..++.+.+.+..++. +...++|+.|+||||+|+.+.+...- ....... .++.-...+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 4677 66677888888877654 56689999999999999998776511 0100000 0000000001100000
Q ss_pred CC----CCcccccCHHHHHHHHHHH----ccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-Hhh-
Q 042327 233 FF----DDSWRAKSVEEKALEIFNS----LSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSEE-VCG- 300 (911)
Q Consensus 233 ~~----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~~-v~~- 300 (911)
.+ .........++....+... ..+++=++|+|+++... ....+...+. ....++.+|++|.+.. +..
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE-EPSGGTTAILLTENKHQILPT 156 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc-CCCCCceEEEEeCChHhCcHH
Confidence 00 0000011122222221111 23455678999986432 2333444443 2334666777776543 322
Q ss_pred hccccceEEeccCCHHHHHHHHHH
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQ 324 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~ 324 (911)
..+....+++.++++++..+.+.+
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHH
Confidence 233456899999999999888865
No 201
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.90 E-value=0.02 Score=61.84 Aligned_cols=200 Identities=16% Similarity=0.231 Sum_probs=125.7
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCceEEEEEeCCc---cCHHHHHHHHHHHcCCC
Q 042327 159 LESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLL-THINNKFLEGPNTFDCVIWVVVSKD---LRVEYIQEVIAKQMGFF 234 (911)
Q Consensus 159 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~~ 234 (911)
|.+..++|-.||.+..-..|.|.|+-|+||+.|+ .++.++. +.+..++|.+- -+-..+...++.++|-.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 4567889999999988889999999999999999 7776664 12666665442 23456666666666421
Q ss_pred C-----------------------CcccccCHHHHHHH-------HHH-------------------Hcc---CCcEEEE
Q 042327 235 D-----------------------DSWRAKSVEEKALE-------IFN-------------------SLS---EKKFVLL 262 (911)
Q Consensus 235 ~-----------------------~~~~~~~~~~~~~~-------l~~-------------------~l~---~k~~LlV 262 (911)
. ..+......++... |++ +|+ .++=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 01111112222111 111 010 1256899
Q ss_pred Ecccccc-----------cccccccccCCCCCCCCcEEEEEcCchhHhhh----cc--ccceEEeccCCHHHHHHHHHHH
Q 042327 263 LDDVWER-----------VDLTKVGVPLPRPKNMASKVVFTTRSEEVCGF----ME--AHRKFKMVCLSDNDSWDLFQQK 325 (911)
Q Consensus 263 lDdv~~~-----------~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~~----~~--~~~~~~l~~L~~~e~~~Lf~~~ 325 (911)
+|+.... .+|... + -..+-.+||++|-+...... +. ..+.+.|...+++-|..+...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---L--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---H--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9998432 234322 2 23456789999988765433 22 3457889999999999999988
Q ss_pred hcCcccC------------CC-----ccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHH
Q 042327 326 VGKEILN------------SH-----PDILELAQTVARECGGLPLALITIGRAMACKKTPEE 370 (911)
Q Consensus 326 ~~~~~~~------------~~-----~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~ 370 (911)
....... .+ .....-....++..||--.-+..+++.++...++.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 7543100 00 122233456778889998999999988887766543
No 202
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.90 E-value=0.00028 Score=69.70 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=25.2
Q ss_pred ccCCccccEEeccccccccccCh---hhhcCCccccEEEccccccc
Q 042327 601 LYALVNLKCLNLEHAEELITIPQ---QVISNFSRLHVLRMYGTVSL 643 (911)
Q Consensus 601 ~~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~ 643 (911)
+-+|++|+..+||+|..-...|. ..|++-+.|.+|.+++|...
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 44566666666666655444443 22566667777777766433
No 203
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.89 E-value=0.03 Score=63.36 Aligned_cols=199 Identities=14% Similarity=0.073 Sum_probs=119.6
Q ss_pred CcccchhhHHHHHHHHHcC-----CCCeEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCCceEEEEEeCCccCHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE-----DPAVIIGIYGMGGVGKTTLLTHINNKFL-----EGPNTFDCVIWVVVSKDLRVEYI 223 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~~F~~~~wv~vs~~~~~~~~ 223 (911)
..+-+|+.+..+|...+.. +..+.+.|.|-+|+|||..+..|.+... .....|+ .+.|..-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 4567899999999887753 3445999999999999999999998652 1122443 344555555678999
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHHHcc-----CCcEEEEEcccccccc--cccccccCCCCCCCCcEEEEEcC-c
Q 042327 224 QEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS-----EKKFVLLLDDVWERVD--LTKVGVPLPRPKNMASKVVFTTR-S 295 (911)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~s~iivTtR-~ 295 (911)
+..|..++.... .......+.+..++. .+..+|++|+++.... .+-+...|.+...++||++|-+= +
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999997643 333444444444443 4568999999853211 11112223223556777766542 1
Q ss_pred h-h---------HhhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 296 E-E---------VCGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 296 ~-~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
. + |+..++ ...+...+.+.++-.++......+-..-.....+=++++|+.-.|-.-.|+.+.-
T Consensus 550 TmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred cccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 1 1 122221 2356778888888888877766433211223344455666665555555554443
No 204
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.87 E-value=0.0064 Score=73.56 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=91.0
Q ss_pred cccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 155 TVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++.|.+..++++.+.+.. ...+.|.++|++|+||||||+.+++.. ...| +.+..+.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~~----- 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGPE----- 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecHH-----
Confidence 478999998888776531 234678899999999999999999986 2222 2222111
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc-------------cccccccCCCCCCCCcE
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD-------------LTKVGVPLPRPKNMASK 288 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~~s~ 288 (911)
+ .... .......+...+.......+.+|+|||++.... ...+...+......+..
T Consensus 248 -i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 248 -I----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred -H----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1 1000 011112222223333345678999999853210 11121111101122334
Q ss_pred EEE-EcCchh-Hhhhc----cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh
Q 042327 289 VVF-TTRSEE-VCGFM----EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL 353 (911)
Q Consensus 289 iiv-TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl 353 (911)
++| ||.... +-..+ .....+.+...+.++-.+++...........+. ....+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCCH
Confidence 444 554432 11111 123467788888888888888655332211111 24567778887643
No 205
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00059 Score=67.71 Aligned_cols=104 Identities=30% Similarity=0.373 Sum_probs=73.3
Q ss_pred ccccceEeecccccccccCCCCCCCCccEEEccCC--CCC-CcChhHHhcCCcccEEEccCCCCccc--CccccCCCCCC
Q 042327 511 EWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNN--ESL-KIPNDFFQYMHSLKVLNLSRIKLKSF--PLGISKLVSLQ 585 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~l~~L~~L~L~~~~i~~l--p~~i~~l~~L~ 585 (911)
.+..+..+++.+..++.+..++.+++|+.|.++.| ++. .++. ....+++|++|+|++|.|..+ -..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34578888888888888888999999999999999 432 2332 245679999999999987642 12456778888
Q ss_pred EEeecCCCCccccc---c-ccCCccccEEecccc
Q 042327 586 QLDLSYSSIKELPR---E-LYALVNLKCLNLEHA 615 (911)
Q Consensus 586 ~L~L~~~~i~~lp~---~-~~~l~~L~~L~l~~~ 615 (911)
.|++.+|..+.+-. . +.-+++|.+|+-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99999987765421 1 222455555554433
No 206
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0046 Score=69.15 Aligned_cols=187 Identities=17% Similarity=0.146 Sum_probs=108.2
Q ss_pred CcccchhhHHHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+++||-+.....+...+..++ ..-....|+-|+||||+|+.++...- ..+ + ....+++.-..-++|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN--C~~-----~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN--CEN-----G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc--CCC-----C-CCCCcchhhhhhHhhhcCCc
Confidence 347999999999999888764 34566789999999999999877651 000 0 11122222222233333210
Q ss_pred CCC---CcccccCHHHHHHHHHHHc-----cCCcEEEEEcccc--cccccccccccCCCCCCCCcEEEEEcCch-hH-hh
Q 042327 233 FFD---DSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVW--ERVDLTKVGVPLPRPKNMASKVVFTTRSE-EV-CG 300 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~~~~~~~~~~~~~s~iivTtR~~-~v-~~ 300 (911)
.+. |.-.....+ -.+.|.+.. +++-=+.|+|+|. +...|..+...+. ..-..-+.|+.|++. .+ ..
T Consensus 88 ~DviEiDaASn~gVd-diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE-EPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 88 IDVIEIDAASNTGVD-DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE-EPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred ccchhhhhhhccChH-HHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc-cCccCeEEEEecCCcCcCchh
Confidence 000 000111122 223333333 3455588999995 3455666555544 222345555555554 33 23
Q ss_pred hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL 353 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl 353 (911)
..+....|.++.++.++-...+...+..+....+ ++....|++...|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 3455678999999999999999988876653332 3455667777776543
No 207
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.021 Score=63.38 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=59.5
Q ss_pred cccchhhHHHHHHHHHcC------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHH
Q 042327 155 TVVGLESTLQKVWRCIVE------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEY 222 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~ 222 (911)
++=|.++...++.+.+.. ...+-|.++|++|+|||.||++++++. . -.| +.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~--vPf-----~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G--VPF-----LSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C--Cce-----Eeecch-----
Confidence 356788888877665531 245788999999999999999999997 2 233 333332
Q ss_pred HHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccc
Q 042327 223 IQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWE 268 (911)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (911)
+|...+ ...+++.+.+...+.-..-++++++|+++.
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222222 223334444444455567899999999963
No 208
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.73 E-value=0.00024 Score=82.28 Aligned_cols=61 Identities=25% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCCCCEEeecCC-CCcc--ccccccCCccccEEecccc-ccccccC---hhhhcCCccccEEEccccc
Q 042327 581 LVSLQQLDLSYS-SIKE--LPRELYALVNLKCLNLEHA-EELITIP---QQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 581 l~~L~~L~L~~~-~i~~--lp~~~~~l~~L~~L~l~~~-~~l~~lp---~~~i~~l~~L~~L~l~~~~ 641 (911)
+++|+.|.+.++ .+.. +-.....+++|+.|++++| ......+ ......+.+|+.|+++.+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 566777777765 4443 3344556677777777762 2222222 1123455666666666543
No 209
>PRK08181 transposase; Validated
Probab=96.72 E-value=0.0019 Score=66.92 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=45.8
Q ss_pred HHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHH
Q 042327 168 RCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKA 247 (911)
Q Consensus 168 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 247 (911)
+|+.. ..-+.++|+.|+|||.||..+.+... .....++|+++ .++...+..... ........
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~------~~L~~~l~~a~~-------~~~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT------TDLVQKLQVARR-------ELQLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH------HHHHHHHHHHHh-------CCcHHHHH
Confidence 45543 34589999999999999999998762 22334566643 445555543321 11222222
Q ss_pred HHHHHHccCCcEEEEEcccc
Q 042327 248 LEIFNSLSEKKFVLLLDDVW 267 (911)
Q Consensus 248 ~~l~~~l~~k~~LlVlDdv~ 267 (911)
.. +. +.=||||||+.
T Consensus 163 ~~----l~-~~dLLIIDDlg 177 (269)
T PRK08181 163 AK----LD-KFDLLILDDLA 177 (269)
T ss_pred HH----Hh-cCCEEEEeccc
Confidence 22 22 33499999994
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.72 E-value=0.027 Score=58.75 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=36.4
Q ss_pred hHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHH
Q 042327 161 STLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQ 224 (911)
Q Consensus 161 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 224 (911)
+.++++..++..+ ..|.+.|.+|+|||++|+.+.... .. ..+.++++...+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 3445555665543 356699999999999999998754 22 23455666555544443
No 211
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.71 E-value=0.016 Score=55.41 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=71.8
Q ss_pred chhhHHHHHHHHHcCCCCe-EEEEEcCCCCcHHHHHHHHHhhcccCC-----------------CCCceEEEEEeCCc--
Q 042327 158 GLESTLQKVWRCIVEDPAV-IIGIYGMGGVGKTTLLTHINNKFLEGP-----------------NTFDCVIWVVVSKD-- 217 (911)
Q Consensus 158 Gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~~F~~~~wv~vs~~-- 217 (911)
|-+...+.+.+.+..++.. .+.++|..|+||+|+|..+.+...... ....-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5566777888888777654 679999999999999999877652111 11112233322221
Q ss_pred -cCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcC
Q 042327 218 -LRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTR 294 (911)
Q Consensus 218 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR 294 (911)
...+++. ++...+.... ..+++=++|+||++.. .....+...+. ....++.+|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEEEC
Confidence 2222222 3333332211 1245668899999753 33444444443 3345788888888
Q ss_pred chh-H-hhhccccceEEeccCC
Q 042327 295 SEE-V-CGFMEAHRKFKMVCLS 314 (911)
Q Consensus 295 ~~~-v-~~~~~~~~~~~l~~L~ 314 (911)
+.. + ....+....+.+.+++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 765 2 2222334566666653
No 212
>PRK06921 hypothetical protein; Provisional
Probab=96.70 E-value=0.0014 Score=68.26 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEe
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVV 214 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v 214 (911)
....+.++|..|+|||+||.++++... +..-..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456799999999999999999999872 221345667664
No 213
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.62 E-value=0.0016 Score=59.19 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
||+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 214
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.61 E-value=0.43 Score=58.57 Aligned_cols=46 Identities=28% Similarity=0.353 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHHHHcC-------C--CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE-------D--PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999988888777642 1 23578899999999999999998875
No 215
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.57 E-value=0.031 Score=55.31 Aligned_cols=170 Identities=16% Similarity=0.256 Sum_probs=95.5
Q ss_pred CcccchhhHHHH---HHHHHcCC------CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHH
Q 042327 154 PTVVGLESTLQK---VWRCIVED------PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQ 224 (911)
Q Consensus 154 ~~~vGr~~~~~~---l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 224 (911)
++++|.+..+.+ |++.|.+. ..+-|..+|++|.|||-+|+++++.. +-.| +-| .. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~v--ka----t--- 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLV--KA----T--- 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEe--ch----H---
Confidence 457998877654 56777653 46789999999999999999999987 3233 111 11 1
Q ss_pred HHHHHHcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEcccccc----------ccccccccc----CCC-CCCCCcE
Q 042327 225 EVIAKQMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWER----------VDLTKVGVP----LPR-PKNMASK 288 (911)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~----~~~-~~~~~s~ 288 (911)
.-|.+..+ +....+..+.+.- +.-++++.+|.++.. .|..++..+ +.. ..+.|-.
T Consensus 186 ~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11111111 1222333344333 346899999988531 111111111 110 2345666
Q ss_pred EEEEcCchhHhhh---ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 289 VVFTTRSEEVCGF---MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 289 iivTtR~~~v~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
-|-+|.+.+.... -.....|+..--+++|-.+++...+..-....+.. .+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 6666766655322 12234566666778888889888775433222222 44566666664
No 216
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.56 E-value=0.027 Score=68.16 Aligned_cols=171 Identities=16% Similarity=0.231 Sum_probs=94.2
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
.++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH---
Confidence 3467888887777665531 134568899999999999999999986 2333 222211
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHH-HccCCcEEEEEccccccc--------c------cccccccCCC-CCC
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN-SLSEKKFVLLLDDVWERV--------D------LTKVGVPLPR-PKN 284 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--------~------~~~~~~~~~~-~~~ 284 (911)
++.... .... +...+.+.+ .-+..+.+|+||+++... . ..++...+.. ...
T Consensus 522 -----~l~~~~-------vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 -----EILSKW-------VGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -----HHhhcc-------cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 111111 1111 222333333 334567999999985321 0 0111111110 122
Q ss_pred CCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh
Q 042327 285 MASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
.+--||.||...+... .+ .....+.++..+.++-.++|...........+.++ ..+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 3455666776655322 11 23567888888999989999876544322222233 45667777643
No 217
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.56 E-value=0.012 Score=70.87 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=37.0
Q ss_pred CcccchhhHHHHHHHHHcC-------C--CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE-------D--PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578988888888777652 1 24568899999999999999998876
No 218
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.046 Score=63.97 Aligned_cols=104 Identities=21% Similarity=0.345 Sum_probs=64.1
Q ss_pred CcccchhhHHHHHHHHHcC---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQ 224 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 224 (911)
..++|-+..++.+.+.+.. ....+....|+.|||||-||+.++...- +.=+..+-++.|.-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEYMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHHHHH----
Confidence 3589999999998888752 2456788899999999999999988871 11133444444432221
Q ss_pred HHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcE-EEEEccccc
Q 042327 225 EVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKF-VLLLDDVWE 268 (911)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 268 (911)
+.+.+-+|.+. .+.. .++ ...+-+..+.++| +|.||+|..
T Consensus 564 HsVSrLIGaPP-GYVG--yee-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 564 HSVSRLIGAPP-GYVG--YEE-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHHhCCCC-CCce--ecc-ccchhHhhhcCCCeEEEechhhh
Confidence 22333334322 1111 111 3445566778887 777899964
No 219
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.55 E-value=0.0027 Score=67.63 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=40.1
Q ss_pred cccchhhHHHHHHHHHcC------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVE------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.++.++++++++.. .+.+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999998864 246899999999999999999998887
No 220
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.52 E-value=0.0063 Score=58.99 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=41.4
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++||-++.++++--...+++.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3589999999998888888899999999999999999999888886
No 221
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.51 E-value=0.0039 Score=61.32 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEE
Q 042327 160 ESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVV 213 (911)
Q Consensus 160 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 213 (911)
..+-...++.|. ...+|.+.|++|.|||.||-+..-+. -..+.|+.++++.
T Consensus 6 ~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 6 NEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 334445556665 45799999999999999999877665 2347888888875
No 222
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.094 Score=55.77 Aligned_cols=177 Identities=8% Similarity=0.025 Sum_probs=93.5
Q ss_pred hHHHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcccCCCC------CceEEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 161 STLQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFLEGPNT------FDCVIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 161 ~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~------F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
...+++.+.+..++ .+.+.+.|+.|+||+++|+.+.....-.... ...+-++.....+|...+ ..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KP 81 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 34556666666554 3578899999999999999987654100000 000000000111111000 00
Q ss_pred CCCcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCch-hHh-hhccc
Q 042327 234 FDDSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSE-EVC-GFMEA 304 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~-~v~-~~~~~ 304 (911)
.. ....-..++.. .+.+.+ .+++=++|+|+++.. .....+...+. ....++.+|++|.+. .+. +..+.
T Consensus 82 ~~-~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 82 EK-EGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred Cc-CCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhc
Confidence 00 00011222222 222222 244558889999643 33344444443 233456666666554 343 33344
Q ss_pred cceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 305 HRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
...+.+.+++.+++.+.+.+.. . + .+..+++.++|.|+.+..+.
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~---~---~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQG---I---T-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcC---C---c-----hHHHHHHHcCCCHHHHHHHh
Confidence 5788999999999998886531 1 1 13467889999999776553
No 223
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.49 E-value=0.0058 Score=64.86 Aligned_cols=116 Identities=21% Similarity=0.194 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 158 GLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 158 Gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
++....+...+++.. ...+-+.++|..|+|||.||.++++... ... ..+.+++++ ++...+.....-
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g-~~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKG-VSSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CCEEEEEHH------HHHHHHHHHHhc
Confidence 454555555555542 2456799999999999999999999982 222 335566543 455555544321
Q ss_pred CCCcccccCHHHHHHHHHHHccCCcEEEEEccccc--cccccc--cccc-CCCCCCCCcEEEEEcC
Q 042327 234 FDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWE--RVDLTK--VGVP-LPRPKNMASKVVFTTR 294 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~--~~~~-~~~~~~~~s~iivTtR 294 (911)
.+..+.. +.++ +-=||||||+.. ..+|.. +... +...-..+-.+|+||.
T Consensus 206 -------~~~~~~l----~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKEKI----DAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHHHH----HHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1222222 2222 345899999943 234532 3222 2201123456777776
No 224
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.48 E-value=0.026 Score=63.82 Aligned_cols=171 Identities=14% Similarity=0.085 Sum_probs=88.9
Q ss_pred CcccchhhHHHHHHHHH---cC-------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHH
Q 042327 154 PTVVGLESTLQKVWRCI---VE-------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYI 223 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 223 (911)
+++.|.+..++.+.+.. .. ...+-|.++|++|+|||.+|+.+++.. ...| +-+.++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGK------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHH-------
Confidence 34678777666654422 11 234678899999999999999999986 2222 1122111
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc----ccc----------cccccCCCCCCCCcEE
Q 042327 224 QEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV----DLT----------KVGVPLPRPKNMASKV 289 (911)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~----------~~~~~~~~~~~~~s~i 289 (911)
+.... ...+...+.+.+...-...+++|++|+++... ... .+...+. ....+--|
T Consensus 295 ---l~~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~v 363 (489)
T CHL00195 295 ---LFGGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVFV 363 (489)
T ss_pred ---hcccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceEE
Confidence 11000 11112222222222223578999999996321 000 0011111 12233446
Q ss_pred EEEcCchhHh-----hhccccceEEeccCCHHHHHHHHHHHhcCcccC--CCccHHHHHHHHHHHcCCCh
Q 042327 290 VFTTRSEEVC-----GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILN--SHPDILELAQTVARECGGLP 352 (911)
Q Consensus 290 ivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~--~~~~l~~~~~~i~~~c~g~P 352 (911)
|.||.+.... +.-.....+.++.-+.++-.++|..+....... ...+ ...+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 6677655421 111234577888888899999998877543211 1122 345666666543
No 225
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.48 E-value=0.016 Score=56.78 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=37.3
Q ss_pred CcccchhhHHHHHHH----HHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWR----CIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~----~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.+..++.+++ .+..-...-|.+||.-|.|||+|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 357999988888765 3334456678899999999999999999988
No 226
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.00015 Score=71.90 Aligned_cols=98 Identities=28% Similarity=0.253 Sum_probs=74.1
Q ss_pred cccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC--ccccCCCCCCEEee
Q 042327 512 WENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP--LGISKLVSLQQLDL 589 (911)
Q Consensus 512 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L 589 (911)
+.+++.|++.++.+.++.-..+++.|++|.|+-|.++.+.+ +..++.|+.|.|+.|.|.++- ..+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34677888888888877666788889999999888888766 778889999999988887663 35678889999988
Q ss_pred cCCCCc-ccc-----ccccCCccccEEe
Q 042327 590 SYSSIK-ELP-----RELYALVNLKCLN 611 (911)
Q Consensus 590 ~~~~i~-~lp-----~~~~~l~~L~~L~ 611 (911)
..|... .-+ ..+.-|+||+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 887443 111 1244578888886
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.47 E-value=0.006 Score=60.25 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCCCcc-cccCHHHHHHHHHHH
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFDDSW-RAKSVEEKALEIFNS 253 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~ 253 (911)
+||.++|+.|+||||.+.+++... ..+ -..+..++... .....+-++..++.++.+.... ...+..+......+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 689999999999999888888777 222 34566666532 2345566788888888653211 122344444333333
Q ss_pred ccCCc-EEEEEccc
Q 042327 254 LSEKK-FVLLLDDV 266 (911)
Q Consensus 254 l~~k~-~LlVlDdv 266 (911)
.+.++ =++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 33333 36666655
No 228
>PRK04296 thymidine kinase; Provisional
Probab=96.45 E-value=0.0029 Score=62.44 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHcc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS 255 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (911)
.++.|+|..|.||||+|..+..+.. .+-..++.+. ..++.+.....++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 5788999999999999999888872 2223333332 2223233344556666543322112334455555554 33
Q ss_pred CCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchh
Q 042327 256 EKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEE 297 (911)
Q Consensus 256 ~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~ 297 (911)
++.-+||+|.+.-. ++..++...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCcc
Confidence 34458999999421 1122222111 345788999998754
No 229
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.42 E-value=0.025 Score=58.36 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=95.5
Q ss_pred CcccchhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH-HHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV-EYIQEVIA 228 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~ 228 (911)
..++|-.++..++-+++.. ++..-|.|+|+.|.|||+|...+..+..+...+| +-|...+.... .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 3478988888888777753 4566788999999999999988877742333333 44444444333 22355555
Q ss_pred HHcCCCCC--cccccCHHHHHHHHHHHccC------CcEEEEEcccccccc------cccccccCCCCCCCCcEEEEEcC
Q 042327 229 KQMGFFDD--SWRAKSVEEKALEIFNSLSE------KKFVLLLDDVWERVD------LTKVGVPLPRPKNMASKVVFTTR 294 (911)
Q Consensus 229 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~s~iivTtR 294 (911)
+|+..... .....+..+....+.+.|+. -+++.|+|+++--.. +..+...-.....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55532110 01222334444555555532 358888888753211 11111111102344566778888
Q ss_pred chhH-------hhhccccceEEeccCCHHHHHHHHHHHh
Q 042327 295 SEEV-------CGFMEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 295 ~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
-... -....-..++-++.++-++...++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6432 2222222355667777788888887765
No 230
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.09 Score=58.99 Aligned_cols=87 Identities=21% Similarity=0.244 Sum_probs=46.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
..+|+|+|.+|+||||++..+.... ........+..++... .....+.++...+.++.... ...+...+...+. .
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~-~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE-R 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-H
Confidence 5799999999999999999988765 2122223455554322 11122233333344443221 1223333443333 3
Q ss_pred ccCCcEEEEEccc
Q 042327 254 LSEKKFVLLLDDV 266 (911)
Q Consensus 254 l~~k~~LlVlDdv 266 (911)
+.+ .=+|++|..
T Consensus 426 l~~-~DLVLIDTa 437 (559)
T PRK12727 426 LRD-YKLVLIDTA 437 (559)
T ss_pred hcc-CCEEEecCC
Confidence 333 447788887
No 231
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.41 E-value=0.011 Score=54.14 Aligned_cols=116 Identities=22% Similarity=0.392 Sum_probs=40.5
Q ss_pred ccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEE
Q 042327 511 EWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQL 587 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L 587 (911)
.+.+++.+.+.. .+..++ .|..+++|+.+.+.++ +..++...|.++..|+.+.+.. .+..++ ..+..+.+|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 344555555442 233332 2455555555555543 5555555555555555555544 333332 233345555555
Q ss_pred eecCCCCccccccccCCccccEEeccccccccccChhhhcCCccc
Q 042327 588 DLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRL 632 (911)
Q Consensus 588 ~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L 632 (911)
++..+ +..++.....-.+|+.+.+.. .+..++...+.++++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNCNLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT-T--EEE-TT--B-SS----GGG-----
T ss_pred ccCcc-ccEEchhhhcCCCceEEEECC--CccEECCccccccccC
Confidence 55443 444433322212555555443 2344444444444444
No 232
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.39 E-value=0.013 Score=59.87 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYI 223 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 223 (911)
...++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 467999999999999999999888762 234678999887 5555443
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=96.38 E-value=0.005 Score=63.89 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+.|+|+.|+|||+||..+....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998775
No 234
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.041 Score=61.94 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=85.6
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++=|.++.+.++-+.+.- ...+-|..+|++|+|||++|+.+++.. ...| +.++.+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp--- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP--- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH---
Confidence 3444577766666554431 356789999999999999999999987 3444 233221
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc-------------cccccccCCCCCCC-C
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD-------------LTKVGVPLPRPKNM-A 286 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~-~ 286 (911)
++.... -..++..+.....+.=+--+.++.||.++.... +.++..-+...... +
T Consensus 503 -----EL~sk~-------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 -----ELFSKY-------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred -----HHHHHh-------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 111111 111222222222233344568888888853210 11111111101111 2
Q ss_pred cEEEEEcCchhH--hhhcc---ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHH
Q 042327 287 SKVVFTTRSEEV--CGFME---AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQ 342 (911)
Q Consensus 287 s~iivTtR~~~v--~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~ 342 (911)
--||-.|...+. ...++ .+..+.++.=+.+--.++|+.++........-++++++.
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 223333433333 12233 345566666666667788998886655444445555443
No 235
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.35 E-value=0.01 Score=61.00 Aligned_cols=90 Identities=16% Similarity=0.262 Sum_probs=55.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-ceEEEEEeCCcc-CHHHHHHHHHHHcCCCCC-----cccccCHH--
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF-DCVIWVVVSKDL-RVEYIQEVIAKQMGFFDD-----SWRAKSVE-- 244 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 244 (911)
+-..++|.|..|+|||||++.+++.. +.+| +.++++-+.+.. .+.++.+++...-..... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 44678999999999999999999987 3334 456666666644 456666666543211110 00111111
Q ss_pred ---HHHHHHHHHc---cCCcEEEEEccc
Q 042327 245 ---EKALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 245 ---~~~~~l~~~l---~~k~~LlVlDdv 266 (911)
..+-.+.+++ +++.+|+++||+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122344555 389999999999
No 236
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.099 Score=56.35 Aligned_cols=178 Identities=10% Similarity=0.045 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcccC--CC-----CCceEEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 162 TLQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFLEG--PN-----TFDCVIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 162 ~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
.-+++.+.+..++ .+-+.+.|+.|+||+|+|..++....-. .. .-..+-++.....+|...+. .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--------P 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------c
Confidence 4456777776654 4677899999999999999876654100 00 00000111111111111000 0
Q ss_pred CCCcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCch-hHh-hhccc
Q 042327 234 FDDSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSE-EVC-GFMEA 304 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~-~v~-~~~~~ 304 (911)
... ...-..++.. .+.+.+ .+++=++|+|+++.. ..-..+...+. ....++.+|++|.+. .+. +..+.
T Consensus 82 ~~~-~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 82 EKG-KSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred ccc-cccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhc
Confidence 000 0011222222 222222 356668999998643 22333333343 223456666666554 343 32344
Q ss_pred cceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 305 HRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
...+.+.+++.+++.+.+.+..+. + .+.+..++..++|.|..+..+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 567899999999999888654221 1 123667899999999755433
No 237
>PRK06526 transposase; Provisional
Probab=96.32 E-value=0.0036 Score=64.53 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+.|+|++|+|||+||..+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4568999999999999999998876
No 238
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.29 E-value=0.12 Score=56.23 Aligned_cols=40 Identities=25% Similarity=0.508 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHcC---CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 160 ESTLQKVWRCIVE---DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 160 ~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+...+.+.+.+.+ +...+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445566666654 467899999999999999999999988
No 239
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.26 E-value=0.012 Score=59.34 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQE 225 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 225 (911)
..+++.|+|.+|+|||++|..+.... ......++|++... +....+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 46899999999999999999988775 22346789999876 55555444
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.18 E-value=0.04 Score=56.26 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC------ceEEEEEeCCccCHHHHHHHHHHHcCCCCCc-------ccc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF------DCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS-------WRA 240 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~ 240 (911)
...++.|+|.+|+|||++|..++... ...- ..++|++....++...+. .+.+..+...+. ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 46799999999999999999987764 1122 567899988777765543 333333221100 012
Q ss_pred cCHHHHHHHHHHHcc----CCcEEEEEcccc
Q 042327 241 KSVEEKALEIFNSLS----EKKFVLLLDDVW 267 (911)
Q Consensus 241 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~ 267 (911)
.+.++....+.+... .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 344444444444332 344588999883
No 241
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.015 Score=59.44 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=50.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCC--CCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGP--NTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
.++|.++|++|.|||+|.++++.+. .++ +.+....-+.++.. .+..+.... ...-...+.++|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh--------sLFSKWFsE----SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH--------SLFSKWFSE----SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh--------HHHHHHHhh----hhhHHHHHHHHHHH
Confidence 4899999999999999999999997 332 34444444444321 222222111 23445666777777
Q ss_pred HccCCc--EEEEEcccc
Q 042327 253 SLSEKK--FVLLLDDVW 267 (911)
Q Consensus 253 ~l~~k~--~LlVlDdv~ 267 (911)
.+.++. +.+.+|+|.
T Consensus 244 Lv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHhCCCcEEEEEeHHHH
Confidence 777665 445569985
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.14 E-value=0.024 Score=58.56 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=45.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
+..-+.++|.+|+|||.||.++.++.. ..--.+.++++ .++..++.....- .....++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~~------~el~~~Lk~~~~~----------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFITA------PDLLSKLKAAFDE----------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEEH------HHHHHHHHHHHhc----------CchHHHHHHH
Confidence 567789999999999999999999982 22234555543 4455555554431 1111222222
Q ss_pred ccCCcEEEEEcccc
Q 042327 254 LSEKKFVLLLDDVW 267 (911)
Q Consensus 254 l~~k~~LlVlDdv~ 267 (911)
++ +-=||||||+-
T Consensus 165 l~-~~dlLIiDDlG 177 (254)
T COG1484 165 LK-KVDLLIIDDIG 177 (254)
T ss_pred hh-cCCEEEEeccc
Confidence 22 22389999994
No 243
>PRK06696 uridine kinase; Validated
Probab=96.14 E-value=0.0083 Score=61.03 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHc---CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 158 GLESTLQKVWRCIV---EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 158 Gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|+.+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35666677766664 3567899999999999999999999887
No 244
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.14 E-value=0.026 Score=57.60 Aligned_cols=87 Identities=24% Similarity=0.291 Sum_probs=49.7
Q ss_pred HHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccc
Q 042327 163 LQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRA 240 (911)
Q Consensus 163 ~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (911)
+..+.++... .+...+.++|.+|+|||+||.++++... ..-..+++++ ..++...+-.... . ..
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~-~----~~ 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFS-N----SE 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHh-h----cc
Confidence 3444444432 2345789999999999999999999872 2223456664 3444444443332 1 11
Q ss_pred cCHHHHHHHHHHHccCCcEEEEEccccc
Q 042327 241 KSVEEKALEIFNSLSEKKFVLLLDDVWE 268 (911)
Q Consensus 241 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (911)
..... +.+.+. +.=+|||||+..
T Consensus 151 ~~~~~----~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 151 TSEEQ----LLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred ccHHH----HHHHhc-cCCEEEEeCCCC
Confidence 12222 333344 344888999953
No 245
>PRK04132 replication factor C small subunit; Provisional
Probab=96.11 E-value=0.078 Score=63.47 Aligned_cols=153 Identities=12% Similarity=0.063 Sum_probs=90.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCC-ceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEE
Q 042327 183 MGGVGKTTLLTHINNKFLEGPNTF-DCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVL 261 (911)
Q Consensus 183 ~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 261 (911)
+.++||||+|..++++.- . ..+ ..++-+++|.......+...+-....... .-..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~-g-~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-----------------~~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF-G-ENWRHNFLELNASDERGINVIREKVKEFARTKP-----------------IGGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh-c-ccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-----------------cCCCCCEEE
Confidence 678999999999999861 1 222 24667777765555543332222111100 001245799
Q ss_pred EEccccccc--ccccccccCCCCCCCCcEEEEEcCch-hHh-hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccH
Q 042327 262 LLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSE-EVC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDI 337 (911)
Q Consensus 262 VlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l 337 (911)
|+|+++... ....+...+. .....+++|++|.+. .+. ...+....+++.+++.++....+...+..+....+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--- 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--- 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 999997542 3444443333 223455666665544 332 22234578999999999999888876654322222
Q ss_pred HHHHHHHHHHcCCChhHHHHH
Q 042327 338 LELAQTVARECGGLPLALITI 358 (911)
Q Consensus 338 ~~~~~~i~~~c~g~Plai~~~ 358 (911)
.+....|++.|+|.+..+..+
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 346788999999988544433
No 246
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.09 E-value=0.013 Score=62.01 Aligned_cols=86 Identities=23% Similarity=0.194 Sum_probs=56.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
.-+++-|+|++|+||||||.+++... ...-..++||+....++.. .+++++...+.. ...+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 46799999999999999999987765 2234568899887776653 345555432211 223445555555
Q ss_pred HHHcc-CCcEEEEEcccc
Q 042327 251 FNSLS-EKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (911)
...++ +..-++|+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 456689999983
No 247
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.09 E-value=0.014 Score=66.12 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
..++..++|++|+||||||..|+++. .| .++=|.+|+.-....+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 46899999999999999999999886 12 4667778877766666666655554321 2
Q ss_pred c--cCCcEEEEEcccccc
Q 042327 254 L--SEKKFVLLLDDVWER 269 (911)
Q Consensus 254 l--~~k~~LlVlDdv~~~ 269 (911)
+ .+++.-||+|+++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 257788999999753
No 248
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.09 E-value=0.0067 Score=67.94 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=40.2
Q ss_pred cccchhhHHHHHHHHHc------CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIV------EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+++|.++.+++|++.|. +.+.+++.++|+.|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999883 3567899999999999999999999877
No 249
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.064 Score=59.68 Aligned_cols=154 Identities=15% Similarity=0.195 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
...-|.+||++|+|||-||++|+|+. +..| ++|..+ +++..- ...++........+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP--------ELlNkY-------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP--------ELLNKY-------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH--------HHHHHH-------hhhHHHHHHHHHHHh
Confidence 34678899999999999999999997 4444 444433 111111 122233333333344
Q ss_pred ccCCcEEEEEcccccc-------ccc------ccccccCCC-CCCCCcEEEEEcCchhHhh--hccc---cceEEeccCC
Q 042327 254 LSEKKFVLLLDDVWER-------VDL------TKVGVPLPR-PKNMASKVVFTTRSEEVCG--FMEA---HRKFKMVCLS 314 (911)
Q Consensus 254 l~~k~~LlVlDdv~~~-------~~~------~~~~~~~~~-~~~~~s~iivTtR~~~v~~--~~~~---~~~~~l~~L~ 314 (911)
-..-+++|.||.++.. ..| .++..-+.. ....|--||-+|..+++.. .+.. ....-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 4567899999999632 111 111111110 1334667777777776632 2222 3456677777
Q ss_pred HHHHHHHHHHHhc--CcccCCCccHHHHHHHHHHHcCCCh
Q 042327 315 DNDSWDLFQQKVG--KEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 315 ~~e~~~Lf~~~~~--~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
.+|-.++++.... ......+-++.++++. .+|.|.-
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8888899988876 3333444567777654 3555543
No 250
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.015 Score=57.11 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
++.+|+|.|.+|+||||+|+.++... +..+ +.-++-. .+-...-............+.....+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~--~~~I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEK--VVVISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCc--ceEeecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999998 2221 1112111 1111111112222333333334566677778888888
Q ss_pred ccCCc
Q 042327 254 LSEKK 258 (911)
Q Consensus 254 l~~k~ 258 (911)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 251
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.08 E-value=0.012 Score=57.47 Aligned_cols=36 Identities=28% Similarity=0.515 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEE
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWV 212 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 212 (911)
...+|.++|+.|+||||+|+.+++.. ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34689999999999999999999987 3345555555
No 252
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.24 Score=53.26 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=56.2
Q ss_pred CCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCc-hhHh-hhccccceEEeccCCHHHHHHHHHHHhcCccc
Q 042327 256 EKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRS-EEVC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEIL 331 (911)
Q Consensus 256 ~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 331 (911)
+++=++|+|+++.. .....+...+. ....++.+|++|.+ ..+. +..+....+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---
Confidence 44558889999643 33444444444 33345655555554 4443 22334578999999999999988764 11
Q ss_pred CCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 332 NSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 332 ~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
++ ...++..++|.|..+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899997665444
No 253
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.05 E-value=0.027 Score=58.31 Aligned_cols=92 Identities=23% Similarity=0.268 Sum_probs=55.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc-------ccccCH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFL---EGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS-------WRAKSV 243 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (911)
...+.=|+|.+|+|||.|+..++-... ...+.=..++|++-...+..+.+. +|+++.+...++ ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 457999999999999999988765430 111223579999999999887775 567765543211 011233
Q ss_pred HHHH---HHHHHHc-cCCcEEEEEccc
Q 042327 244 EEKA---LEIFNSL-SEKKFVLLLDDV 266 (911)
Q Consensus 244 ~~~~---~~l~~~l-~~k~~LlVlDdv 266 (911)
+++. ..+...+ ..+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 3333 2333333 234458889988
No 254
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.03 E-value=0.024 Score=53.36 Aligned_cols=117 Identities=20% Similarity=0.115 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC---ccCHHHHHHHHHHHcC---CCC-CcccccCHHH---
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK---DLRVEYIQEVIAKQMG---FFD-DSWRAKSVEE--- 245 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~---~~~-~~~~~~~~~~--- 245 (911)
..|-|++..|.||||+|...+-+. ..+-..+.+|..-. ......+++.+- .+. ... ..+...+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 478889999999999999887775 12222344444322 233333333330 000 000 0001111111
Q ss_pred ----HHHHHHHHccC-CcEEEEEcccccc-----cccccccccCCCCCCCCcEEEEEcCchh
Q 042327 246 ----KALEIFNSLSE-KKFVLLLDDVWER-----VDLTKVGVPLPRPKNMASKVVFTTRSEE 297 (911)
Q Consensus 246 ----~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~~~~~~~~~~~~~s~iivTtR~~~ 297 (911)
..+..++.+.. +-=|||||++-.. .+.+.+...+. ....+..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 12223344444 3459999998432 23334433333 3345678999999854
No 255
>PRK06762 hypothetical protein; Provisional
Probab=96.03 E-value=0.066 Score=51.61 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|+|+.|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999886
No 256
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.00 E-value=0.046 Score=55.49 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR 219 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~ 219 (911)
...++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 46899999999999999999988776 12234678887655543
No 257
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.98 E-value=0.024 Score=69.60 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=38.1
Q ss_pred CcccchhhHHHHHHHHHcCC---------CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVED---------PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45899999999998877531 24578899999999999999999876
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.97 E-value=0.034 Score=53.26 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR 219 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~ 219 (911)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999998887 22345677887766543
No 259
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.01 Score=54.54 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFD 235 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 235 (911)
+|.|-|.+|+||||+|+.+.++. . -.| .+.-.++++|++..+++-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-g--l~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-G--LKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-C--Cce-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999998 2 111 133468899999988754
No 260
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.97 E-value=0.082 Score=62.63 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=80.7
Q ss_pred cccchhhHHHHHHH---HHcC---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHH
Q 042327 155 TVVGLESTLQKVWR---CIVE---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEY 222 (911)
Q Consensus 155 ~~vGr~~~~~~l~~---~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~ 222 (911)
++.|.+..++++.+ ++.+ .-.+-|.++|++|+||||+|+.+.+.. ...| +.+..+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 35676666555544 3322 112458999999999999999999886 2233 2222221
Q ss_pred HHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc------------c----ccccccCCC-CCCC
Q 042327 223 IQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD------------L----TKVGVPLPR-PKNM 285 (911)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------------~----~~~~~~~~~-~~~~ 285 (911)
+.. .. ...........+...-...+.+|++|+++.... . ..+...+.. ....
T Consensus 221 ~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 110 00 011112222223333345678999999954210 1 111111110 1233
Q ss_pred CcEEEEEcCchhHhhh--c---cccceEEeccCCHHHHHHHHHHHhcCc
Q 042327 286 ASKVVFTTRSEEVCGF--M---EAHRKFKMVCLSDNDSWDLFQQKVGKE 329 (911)
Q Consensus 286 ~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (911)
+.-||.||...+.... . .....+.+..-+.++-.+++..+....
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 4456667776654221 1 234677888888888888888776543
No 261
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.96 E-value=0.02 Score=60.71 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
.-+++-|+|.+|+||||||.++.... ...-..++||+..+.++.. .+++++...+.. ...+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 56899999999999999999887776 2234567899877766653 355555433211 223445555555
Q ss_pred HHHcc-CCcEEEEEcccc
Q 042327 251 FNSLS-EKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (911)
...++ +..-++|+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 456689999983
No 262
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.96 E-value=0.055 Score=53.66 Aligned_cols=82 Identities=17% Similarity=0.098 Sum_probs=46.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCc---eEEEEEeCCccCHHHHHHHHHHHc--CCCCCcccccCHHHHHHHHH
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKFLEGPNTFD---CVIWVVVSKDLRVEYIQEVIAKQM--GFFDDSWRAKSVEEKALEIF 251 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~---~~~wv~vs~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 251 (911)
||+|.|.+|+||||+|+.+..... +.... ....+.............. .... ....+.....+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999882 12222 2333332222222222221 1211 11122234567777777777
Q ss_pred HHccCCcEEE
Q 042327 252 NSLSEKKFVL 261 (911)
Q Consensus 252 ~~l~~k~~Ll 261 (911)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666443
No 263
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.95 E-value=0.019 Score=55.52 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=65.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccC--C---CCCc--eEEEEEeCCccCHHHHHHHHHHHcCCCCC---c-ccccC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEG--P---NTFD--CVIWVVVSKDLRVEYIQEVIAKQMGFFDD---S-WRAKS 242 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~---~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~-~~~~~ 242 (911)
.-.+++|+|+.|+|||||.+.+..+.-++ . ..|. .+.|+ .+ .+.++.+++... . ...-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45789999999999999999986432010 0 0111 12332 22 456666665321 1 11112
Q ss_pred H-HHHHHHHHHHccCC--cEEEEEcccccccc---cccccccCCCCCCCCcEEEEEcCchhHhhhccccceEEe
Q 042327 243 V-EEKALEIFNSLSEK--KFVLLLDDVWERVD---LTKVGVPLPRPKNMASKVVFTTRSEEVCGFMEAHRKFKM 310 (911)
Q Consensus 243 ~-~~~~~~l~~~l~~k--~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (911)
. +...-.+...+..+ +-++++|+.-...| ...+...+......|..||++|.+...... ....+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 22223344555566 77888999744322 222222222111246778899988876542 3444444
No 264
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.93 E-value=0.013 Score=71.27 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=38.0
Q ss_pred CcccchhhHHHHHHHHHcC---------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE---------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999998887742 134578999999999999999988876
No 265
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.91 E-value=0.02 Score=52.44 Aligned_cols=104 Identities=22% Similarity=0.321 Sum_probs=65.6
Q ss_pred CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEEeecCCCCcccccccc-CCccc
Q 042327 530 EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQLDLSYSSIKELPRELY-ALVNL 607 (911)
Q Consensus 530 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~~~-~l~~L 607 (911)
.|..|++|+.+.+.. .+..++...|.++..|+.+.+..+ +..++. .+.++.+|+.+.+.. .+..++.... .+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 367888999999885 577888888999989999999885 766653 467777899999976 6666665544 48999
Q ss_pred cEEeccccccccccChhhhcCCccccEEEccc
Q 042327 608 KCLNLEHAEELITIPQQVISNFSRLHVLRMYG 639 (911)
Q Consensus 608 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 639 (911)
+.+++..+ +..++...+.++ +|+.+.+..
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 99998764 567777768887 888888765
No 266
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.90 E-value=0.03 Score=58.41 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=36.5
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEE
Q 042327 158 GLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVI 210 (911)
Q Consensus 158 Gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~ 210 (911)
+|..+-.--++.|.++.+..|.+.|.+|.|||.||-+..=..--.++.|..++
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 35555555688899999999999999999999888654322211234555443
No 267
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.90 E-value=0.0078 Score=59.87 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHH---HHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQE---VIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
.+|.|+|+.|+||||++..+.... .......+++- .++. +.... .+..+-.. ..+.......++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPI--EFVHESKRSLINQREV------GLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCc--cccccCccceeeeccc------CCCccCHHHHHHH
Confidence 478999999999999999887776 22223333332 1111 10000 11111000 1112334556677
Q ss_pred HccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHh
Q 042327 253 SLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVC 299 (911)
Q Consensus 253 ~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~ 299 (911)
.+...+=.+++|++.+.+....+... ...|..++.|+-..++.
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~----a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTA----AETGHLVMSTLHTNSAA 112 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHH----HHcCCEEEEEecCCcHH
Confidence 77777779999999765554433222 12355677777655543
No 268
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.88 E-value=0.011 Score=59.64 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=64.5
Q ss_pred hhHHHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 042327 11 CDAIFSRCLDCTVTRAAYISELQANIDALRTERQRLIEARNDVLRKVAAAEQQRMRRLNKVQGWLSRVEAVEADADKLIR 90 (911)
Q Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~Wl~~v~~~~~~~ed~ld 90 (911)
++.+++.|-.........+.-++.+++.++.|++.||.||+.+ +++...+.+. .+....++-..||++|.++|
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeeee
Confidence 6788888888888888889999999999999999999999997 5554444433 88999999999999999999
Q ss_pred hC
Q 042327 91 DS 92 (911)
Q Consensus 91 ~~ 92 (911)
-+
T Consensus 371 aC 372 (402)
T PF12061_consen 371 AC 372 (402)
T ss_pred hh
Confidence 76
No 269
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.16 Score=50.01 Aligned_cols=166 Identities=17% Similarity=0.236 Sum_probs=89.4
Q ss_pred ccc-hhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 156 VVG-LESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 156 ~vG-r~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++| .++.+++|.+.+.- .+.+-|.++|++|.|||-||++|+++. ++.|+.||...-
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgsel-- 217 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSEL-- 217 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHHH--
Confidence 454 56667776665531 256788899999999999999999985 345677776421
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHH-ccCCcEEEEEccccccc----------c------cccccccCCC-CC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS-LSEKKFVLLLDDVWERV----------D------LTKVGVPLPR-PK 283 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~----------~------~~~~~~~~~~-~~ 283 (911)
+++-|.+. ....+.++-. -..-+.++.+|++++.. | .-++...+.. ..
T Consensus 218 -vqk~igeg-------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 218 -VQKYIGEG-------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred -HHHHhhhh-------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 11111110 1111121111 12356778888875421 0 0011111110 23
Q ss_pred CCCcEEEEEcCchhHhhh--cc---ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHH
Q 042327 284 NMASKVVFTTRSEEVCGF--ME---AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVA 345 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~ 345 (911)
.+.-|||.+|..-++... +. -++.++..+-+++.-.++++-+.........-++..+|.++.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 456789988877666432 22 245677777776666666665543332222234555555543
No 270
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.82 E-value=0.05 Score=57.95 Aligned_cols=91 Identities=23% Similarity=0.268 Sum_probs=57.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc-------cccC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGP----NTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW-------RAKS 242 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 242 (911)
..+++-|+|.+|+|||+|+..++-.. ... ..=..++||+....++.+.+. +++++++...+.. ...+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 56799999999999999998866433 111 122478999999988888775 4677776543210 1112
Q ss_pred HHHHH---HHHHHHcc-CCcEEEEEccc
Q 042327 243 VEEKA---LEIFNSLS-EKKFVLLLDDV 266 (911)
Q Consensus 243 ~~~~~---~~l~~~l~-~k~~LlVlDdv 266 (911)
.++.. ..+...+. .+--|||+|.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 33332 33333332 34457888888
No 271
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.82 E-value=0.023 Score=69.42 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=37.2
Q ss_pred CcccchhhHHHHHHHHHcC-------C--CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE-------D--PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|-+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4589999999998877752 1 23467799999999999999998876
No 272
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.05 Score=59.15 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=77.5
Q ss_pred ccchhhHHHHHHHHHcC-CCCeE-EEEEcCCCCcHHHHHHHHHhhcccCC----C--------------CCceEEEEEeC
Q 042327 156 VVGLESTLQKVWRCIVE-DPAVI-IGIYGMGGVGKTTLLTHINNKFLEGP----N--------------TFDCVIWVVVS 215 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~----~--------------~F~~~~wv~vs 215 (911)
++|-+....++..+... ++.+- +.++|+.|+||||+|..+.+...... . ....+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56777778888877764 44555 99999999999999999988862100 0 11234444444
Q ss_pred CccC---HHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc--cccccccCCCCCCCCcEEE
Q 042327 216 KDLR---VEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD--LTKVGVPLPRPKNMASKVV 290 (911)
Q Consensus 216 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~s~ii 290 (911)
.... ..+..+++.+...... ..++.-++++|+++.... -..+...+. .....+.+|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~~i 143 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTRFI 143 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeEEE
Confidence 4333 2333344443333221 035677899999965321 222222222 334567777
Q ss_pred EEcCch-hHhh-hccccceEEecc
Q 042327 291 FTTRSE-EVCG-FMEAHRKFKMVC 312 (911)
Q Consensus 291 vTtR~~-~v~~-~~~~~~~~~l~~ 312 (911)
++|... .+.. ..+....+++.+
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEcCChhhccchhhhcceeeecCC
Confidence 777743 2322 112234566665
No 273
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.022 Score=64.34 Aligned_cols=73 Identities=23% Similarity=0.179 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc--CHHHHHHHHHHHcCCCCCcccccCHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL--RVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIF 251 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (911)
...-|.|.|..|+|||+||+++++.+. +...-++..|+++.-- ..+.+++.+ ...+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l-------------------~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFL-------------------NNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHH-------------------HHHHH
Confidence 345788999999999999999999983 5566667777776531 122222221 12233
Q ss_pred HHccCCcEEEEEcccc
Q 042327 252 NSLSEKKFVLLLDDVW 267 (911)
Q Consensus 252 ~~l~~k~~LlVlDdv~ 267 (911)
+.+.-.+-++||||++
T Consensus 489 e~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHhhCCcEEEEcchh
Confidence 4456678999999995
No 274
>PRK06547 hypothetical protein; Provisional
Probab=95.78 E-value=0.014 Score=56.32 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 165 KVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 165 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+...+......+|+|.|..|+||||+|+.+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556678899999999999999999998875
No 275
>PRK09354 recA recombinase A; Provisional
Probab=95.74 E-value=0.028 Score=60.10 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=57.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
.-+++-|+|+.|+||||||.+++... ...-..++||+.-..++.. .+++++...+.. ...+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 56799999999999999999987766 2334678899988877753 455555443211 223445555555
Q ss_pred HHHcc-CCcEEEEEcccc
Q 042327 251 FNSLS-EKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (911)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 44443 456689999983
No 276
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.69 E-value=0.03 Score=57.58 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=54.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc-------ccccC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPN----TFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS-------WRAKS 242 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 242 (911)
...++.|+|.+|+|||++|..++-.. .... ....++|++....++...+. ++++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45799999999999999999987553 1111 13678999988877765443 344443322110 01112
Q ss_pred HH---HHHHHHHHHcc-C-CcEEEEEcccc
Q 042327 243 VE---EKALEIFNSLS-E-KKFVLLLDDVW 267 (911)
Q Consensus 243 ~~---~~~~~l~~~l~-~-k~~LlVlDdv~ 267 (911)
.+ .....+.+.+. . +.-+||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 22 23334444443 3 56688888883
No 277
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.16 Score=50.31 Aligned_cols=54 Identities=30% Similarity=0.425 Sum_probs=41.7
Q ss_pred ccccCCCC--CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 146 VAVEKPTD--PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 146 ~~~~~~~~--~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++++|++ +++=|.++.++++++.+.- ...+-|..+|++|.|||-+|++.+...
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 34566654 4477899999999987742 245678899999999999999987765
No 278
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.64 E-value=0.081 Score=58.89 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=50.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCCCcc-cccCHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFDDSW-RAKSVEEKALEIF 251 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 251 (911)
...+|.++|..|+||||.|..++... .. ..+ .++.|++.. .....+.++.++++++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35799999999999999999998877 22 222 344444322 1223455666677766542111 1223333333333
Q ss_pred HHccCCcEEEEEccc
Q 042327 252 NSLSEKKFVLLLDDV 266 (911)
Q Consensus 252 ~~l~~k~~LlVlDdv 266 (911)
+.+.+. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 45777766
No 279
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.63 E-value=0.049 Score=57.39 Aligned_cols=88 Identities=23% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
+.++|+|+|+.|+||||++..++... .....-..+..|+.... ....+.+..-.+.++.+.. ...+...+...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 35799999999999999999988776 21111124555554321 1123333344444444321 1233444444443
Q ss_pred HccCCcEEEEEccc
Q 042327 253 SLSEKKFVLLLDDV 266 (911)
Q Consensus 253 ~l~~k~~LlVlDdv 266 (911)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 346777753
No 280
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.13 Score=59.11 Aligned_cols=92 Identities=21% Similarity=0.205 Sum_probs=61.6
Q ss_pred CcccchhhHHHHHHHHHcC------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIVE------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
+++=|.++.+.+|.+-+.- .+.+-|.++|++|.|||-+|++|+-+. . ..|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----
Confidence 4567889999999887642 136789999999999999999999987 1 345566554
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccc
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWE 268 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 268 (911)
+++. .- ...+++.+.+...+.=..++++|.||++++
T Consensus 740 ELLN----MY-------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLN----MY-------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHH----HH-------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1111 10 122333333333444456899999999964
No 281
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.58 E-value=0.017 Score=55.36 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=44.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCccccc-CHHHHHHHHHHHccC
Q 042327 178 IGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAK-SVEEKALEIFNSLSE 256 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~l~~~l~~ 256 (911)
+.|.|..|+|||++|..+.... ...++++.-.+.++.+ ..+.|.+.-......+... ....+.+.+.+ ..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~-~~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKE-LD- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHh-cC-
Confidence 6799999999999999987552 2356677666666553 4444333222222222221 22233333322 22
Q ss_pred CcEEEEEccc
Q 042327 257 KKFVLLLDDV 266 (911)
Q Consensus 257 k~~LlVlDdv 266 (911)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337999987
No 282
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.56 E-value=0.062 Score=57.70 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=56.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcc-c--CCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc-------cccCH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFL-E--GPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW-------RAKSV 243 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~--~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 243 (911)
..+++-|+|.+|+|||+|+..++-... . ....-..++||+....|..+.+.+ +++.++...+.. ...+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 567889999999999999988754320 0 011224789999999999887654 667776543210 12233
Q ss_pred HHHH---HHHHHHc-cCCcEEEEEccc
Q 042327 244 EEKA---LEIFNSL-SEKKFVLLLDDV 266 (911)
Q Consensus 244 ~~~~---~~l~~~l-~~k~~LlVlDdv 266 (911)
++.. ..+...+ ..+--|||+|.+
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3322 2222233 233457888887
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.014 Score=53.58 Aligned_cols=24 Identities=50% Similarity=0.603 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
--|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999987
No 284
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.025 Score=61.61 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=35.9
Q ss_pred cccchhh---HHHHHHHHHcCC--------C-CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLES---TLQKVWRCIVED--------P-AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~---~~~~l~~~l~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++-|.|+ ++++|+++|.+. + .+-|.++|++|.|||-||++|+-+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567765 456678888763 1 3678899999999999999999987
No 285
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.54 E-value=0.028 Score=59.61 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.....++|||++|.|||.+|+.++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356799999999999999999999997
No 286
>PTZ00301 uridine kinase; Provisional
Probab=95.53 E-value=0.023 Score=56.65 Aligned_cols=25 Identities=40% Similarity=0.700 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4799999999999999999988775
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.53 E-value=0.043 Score=53.63 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc------------cccc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS------------WRAK 241 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 241 (911)
.-.+++|+|..|.|||||++.+....... ...+++.-. +.......+.+.++.-... ...-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQ----QGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCC----CCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 45689999999999999999998875211 222332211 1111111111111110000 0011
Q ss_pred CH-HHHHHHHHHHccCCcEEEEEccccccccc---ccccccCCCCCCCCcEEEEEcCchhHhhhccccceEEe
Q 042327 242 SV-EEKALEIFNSLSEKKFVLLLDDVWERVDL---TKVGVPLPRPKNMASKVVFTTRSEEVCGFMEAHRKFKM 310 (911)
Q Consensus 242 ~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (911)
+. +...-.+...+..++=++++|+....-|. +.+...+. ....+..||++|.+...... ..+.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11 22223355666677789999998543321 22222221 11236778888888776542 3444444
No 288
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.52 E-value=0.0053 Score=36.31 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=7.8
Q ss_pred CCEEeecCCCCcccccc
Q 042327 584 LQQLDLSYSSIKELPRE 600 (911)
Q Consensus 584 L~~L~L~~~~i~~lp~~ 600 (911)
|++|||++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 289
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.51 E-value=0.036 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++.++|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 290
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.51 E-value=0.059 Score=54.65 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-----ccCHHHHHHHHHHHcCCCCCcc-----cccCH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-----DLRVEYIQEVIAKQMGFFDDSW-----RAKSV 243 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~~-----~~~~~ 243 (911)
+..+++|||-.|+||||+++.+..=.. .-...+++...+ .....+-..++++.++...+.. +-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~----pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE----PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC----CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 557999999999999999999988651 112233332211 2223455667777777543211 11111
Q ss_pred HHHHHHHHHHccCCcEEEEEccccccccc---ccccccCCC-CCCCCcEEEEEcCchhHhhhccc
Q 042327 244 EEKALEIFNSLSEKKFVLLLDDVWERVDL---TKVGVPLPR-PKNMASKVVFTTRSEEVCGFMEA 304 (911)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~~~~-~~~~~s~iivTtR~~~v~~~~~~ 304 (911)
+.-.-.|.+.|.-++-++|.|+.-+..|. .++...+.. ....|-..++.|-+-.++..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 22223467788889999999987443221 111111110 12346678888888888776544
No 291
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.50 E-value=0.0097 Score=55.35 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=30.7
Q ss_pred cchhhHHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 157 VGLESTLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 157 vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
||.-..++++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666666666665543 344567899999999999999988875
No 292
>PHA00729 NTP-binding motif containing protein
Probab=95.50 E-value=0.018 Score=57.32 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 165 KVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 165 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++++.+.+.+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555666666789999999999999999999875
No 293
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.47 E-value=0.058 Score=53.73 Aligned_cols=127 Identities=18% Similarity=0.232 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCC--C------------------ceEEEEEeCCcc---------------
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNT--F------------------DCVIWVVVSKDL--------------- 218 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F------------------~~~~wv~vs~~~--------------- 218 (911)
+-..|+|+|+.|+|||||...+..-.....+. | ..+-+| -|.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfv--FQ~~nLl~~ltv~ENv~lp 107 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFV--FQNFNLLPDLTVLENVELP 107 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEE--CccCCCCCCCCHHHHHHhH
Confidence 45689999999999999999886533110000 1 111111 1111
Q ss_pred ---------CHHHHHHHHHHHcCCCCCc----cccc-CHHHHHHHHHHHccCCcEEEEEccccccccc---ccccccCCC
Q 042327 219 ---------RVEYIQEVIAKQMGFFDDS----WRAK-SVEEKALEIFNSLSEKKFVLLLDDVWERVDL---TKVGVPLPR 281 (911)
Q Consensus 219 ---------~~~~~~~~i~~~l~~~~~~----~~~~-~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~~~~ 281 (911)
...+....+++.+++.... .... .-++..-.+.+.|..++-+|+-|+--..-|- ..+...+..
T Consensus 108 l~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~ 187 (226)
T COG1136 108 LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRE 187 (226)
T ss_pred HHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHH
Confidence 1233455566666654211 0111 1233344577788888889999986322111 111111110
Q ss_pred -CCCCCcEEEEEcCchhHhhhc
Q 042327 282 -PKNMASKVVFTTRSEEVCGFM 302 (911)
Q Consensus 282 -~~~~~s~iivTtR~~~v~~~~ 302 (911)
....|..||+.|.+..+|...
T Consensus 188 ~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 188 LNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHhcCCEEEEEcCCHHHHHhC
Confidence 234588899999999998864
No 294
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.0067 Score=35.90 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=13.3
Q ss_pred cccEEEccCCCCcccCccccC
Q 042327 560 SLKVLNLSRIKLKSFPLGISK 580 (911)
Q Consensus 560 ~L~~L~L~~~~i~~lp~~i~~ 580 (911)
+|++|+|++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366667777766666665544
No 295
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.45 E-value=0.077 Score=56.75 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcc-c--CCCCCceEEEEEeCCccCHHHHHHHHHHHcCCC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFL-E--GPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFF 234 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~--~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 234 (911)
...++.|+|.+|+|||||+..++.... . ....-..++|++....+.... +.++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 568999999999999999998876431 0 111224679999888777776 34456666543
No 296
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.44 E-value=0.011 Score=54.06 Aligned_cols=22 Identities=41% Similarity=0.770 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 042327 178 IGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|+|.|+.|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998883
No 297
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.43 E-value=0.1 Score=56.28 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=42.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCceEEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPN----TFDCVIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
...++-|+|.+|+|||+++..++-.. .... .=..++||+....++...+. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 46899999999999999999987664 1111 11479999998888877664 44455543
No 298
>PRK07667 uridine kinase; Provisional
Probab=95.40 E-value=0.021 Score=56.53 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=28.9
Q ss_pred HHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 164 QKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 164 ~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.+.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555543 355799999999999999999999876
No 299
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.39 E-value=0.037 Score=53.65 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.-.+++|+|..|+|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345699999999999999999998765
No 300
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.056 Score=58.58 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=51.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
+..++.++|+.|+||||++.++.... ........+..++... .....+-++...+.++..... ..+..++...+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 34799999999999999999998875 1111123455555322 223455566667777654321 12222233333 3
Q ss_pred HccCCcEEEEEccc
Q 042327 253 SLSEKKFVLLLDDV 266 (911)
Q Consensus 253 ~l~~k~~LlVlDdv 266 (911)
.+.++. ++++|..
T Consensus 212 ~l~~~D-lVLIDTa 224 (374)
T PRK14722 212 ELRNKH-MVLIDTI 224 (374)
T ss_pred HhcCCC-EEEEcCC
Confidence 344554 5568887
No 301
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.37 E-value=0.046 Score=53.47 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=64.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEE---eCCccCHHHHH------HHHHHHcCCCCCc---cccc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVV---VSKDLRVEYIQ------EVIAKQMGFFDDS---WRAK 241 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---vs~~~~~~~~~------~~i~~~l~~~~~~---~~~~ 241 (911)
+-.+++|+|..|.|||||++.++.... .....+++. +.. .+..... -++++.+++.... ....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 457999999999999999999988651 223333332 211 1221111 1245555543210 0111
Q ss_pred C-HHHHHHHHHHHccCCcEEEEEcccccccc---cccccccCCCCCCC-CcEEEEEcCchhHh
Q 042327 242 S-VEEKALEIFNSLSEKKFVLLLDDVWERVD---LTKVGVPLPRPKNM-ASKVVFTTRSEEVC 299 (911)
Q Consensus 242 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~-~s~iivTtR~~~v~ 299 (911)
+ -+...-.+.+.+...+-++++|+.-..-| ...+...+...... +..||++|.+....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 22233345566677888999999854322 22222222211122 56788888876644
No 302
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.37 E-value=0.087 Score=54.12 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEV 226 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 226 (911)
..+++.|.|.+|+|||++|.++.... -..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHH
Confidence 56899999999999999999866553 12345688888765 44455554
No 303
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.36 E-value=0.058 Score=58.92 Aligned_cols=85 Identities=24% Similarity=0.344 Sum_probs=51.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
...++.|.|.+|+|||||+..++.... ..-..++|++..+. ..++ ..-++.++...+.. ...+.+.+.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 457999999999999999999988762 22346778876543 2332 22344555433221 122334444433
Q ss_pred HHHccCCcEEEEEcccc
Q 042327 251 FNSLSEKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l~~k~~LlVlDdv~ 267 (911)
. ..+.-+||+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 2356688999883
No 304
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.14 Score=60.07 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=84.6
Q ss_pred ccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhccc--CCCC-CceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 156 VVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLE--GPNT-FDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
++||+++++++++.|....-.--.++|-+|+|||++|.-++.+... +... =+..++. .| |..-..
T Consensus 172 vIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD-------~g~LvA 239 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LD-------LGSLVA 239 (786)
T ss_pred CcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ec-------HHHHhc
Confidence 7999999999999997532223347899999999999888777511 1110 0111111 01 111111
Q ss_pred CCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccccc----------ccccccccCCCCCCCCcEEEEEcCchhH---
Q 042327 233 FFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERV----------DLTKVGVPLPRPKNMASKVVFTTRSEEV--- 298 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~~~~~~~~~~~~~s~iivTtR~~~v--- 298 (911)
.. . -..+.+++...+.+.+ +.++.+|++|.+.... |-..+..|.. ..+.-..|--||-++--
T Consensus 240 Ga--k-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-ARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 240 GA--K-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-ARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred cc--c-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-hcCCeEEEEeccHHHHHHHh
Confidence 11 1 1233444444444444 4558999999996431 1222233322 12222334445533311
Q ss_pred ---hhhccccceEEeccCCHHHHHHHHHHHh
Q 042327 299 ---CGFMEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 299 ---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
+.....-+.+.+..-+.+++..+++-..
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1111234678888899999998887543
No 305
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.35 E-value=0.095 Score=49.79 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEE---------------------eCCc---------------
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVV---------------------VSKD--------------- 217 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---------------------vs~~--------------- 217 (911)
....+.++|+.|.||||+.+.+|...... ...+|+. |-|+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt----~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC----CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45789999999999999999999886211 1223321 1111
Q ss_pred ------cCHHHHHH---HHHHHcCCCCCc----ccccCHHHHHHHHHHHccCCcEEEEEccccc----ccccccccccCC
Q 042327 218 ------LRVEYIQE---VIAKQMGFFDDS----WRAKSVEEKALEIFNSLSEKKFVLLLDDVWE----RVDLTKVGVPLP 280 (911)
Q Consensus 218 ------~~~~~~~~---~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~----~~~~~~~~~~~~ 280 (911)
....++.+ +.++..++.... .+-..-++..-.|.+.+-+++-+|+-|+--. ...|+-+ ..|.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHH
Confidence 11122222 223333322210 0111223333456667778888999987532 2334432 2222
Q ss_pred CCCCCCcEEEEEcCchhHhhhc
Q 042327 281 RPKNMASKVVFTTRSEEVCGFM 302 (911)
Q Consensus 281 ~~~~~~s~iivTtR~~~v~~~~ 302 (911)
.-+..|..|+++|.+..+...+
T Consensus 182 einr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhc
Confidence 1356799999999999876665
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.33 E-value=0.086 Score=54.14 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=54.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc----------------
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS---------------- 237 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------------- 237 (911)
..+++.|+|.+|+|||++|.++.... ...=..++|++..+. ..++.+.+ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 56899999999999999999986553 123457888888654 34555543 334322111
Q ss_pred --ccccCHHHHHHHHHHHccC-CcEEEEEcccc
Q 042327 238 --WRAKSVEEKALEIFNSLSE-KKFVLLLDDVW 267 (911)
Q Consensus 238 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 267 (911)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234555666666643 55588899874
No 307
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.29 E-value=0.015 Score=46.53 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 308
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.25 E-value=0.031 Score=54.27 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998765
No 309
>PRK08233 hypothetical protein; Provisional
Probab=95.24 E-value=0.016 Score=56.87 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999886
No 310
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.21 E-value=0.07 Score=59.21 Aligned_cols=91 Identities=22% Similarity=0.243 Sum_probs=46.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCCCcc-cccCHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFDDSW-RAKSVEEKALEIF 251 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 251 (911)
...++.++|..|+||||.|..++... ..+..+ .++-|++.. .+...+-++...++.+.+.... ...++.+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 45799999999999999998887775 111112 333443321 1112333444455555432111 1223444444333
Q ss_pred HHccCCcE-EEEEccc
Q 042327 252 NSLSEKKF-VLLLDDV 266 (911)
Q Consensus 252 ~~l~~k~~-LlVlDdv 266 (911)
+....+.+ ++|+|-.
T Consensus 176 ~~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 176 EYAKENGFDVVIVDTA 191 (428)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 33333444 6666655
No 311
>PRK10867 signal recognition particle protein; Provisional
Probab=95.20 E-value=0.07 Score=59.19 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.++|.+|+||||.|..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999888887765
No 312
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.20 E-value=0.022 Score=54.71 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc--cCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD--LRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIF 251 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (911)
.-.+++|+|..|.|||||.+.++... ......+++.-... .+..+. ..+.++... +-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 45689999999999999999998775 12334444432111 111111 111111100 0111222333455
Q ss_pred HHccCCcEEEEEcccccccc---cccccccCCCCCCCCcEEEEEcCchhHh
Q 042327 252 NSLSEKKFVLLLDDVWERVD---LTKVGVPLPRPKNMASKVVFTTRSEEVC 299 (911)
Q Consensus 252 ~~l~~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~s~iivTtR~~~v~ 299 (911)
+.+-.++-++++|+.-..-| ...+...+......+..||++|.+....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 66667778899999854322 2222222211112366788888887643
No 313
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.068 Score=52.42 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=44.1
Q ss_pred HHHHHHHHHHccCCcEEEEEcccccccccccccc---cCCCCCCCCcEEEEEcCchhHhhhccccceEEe
Q 042327 244 EEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGV---PLPRPKNMASKVVFTTRSEEVCGFMEAHRKFKM 310 (911)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~---~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (911)
+.....|.+.+--++-+.|||..++-.|.+.+.. .+......|+-+++.|..+.++.....+.++-+
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 3445556666667788999999987666554421 111123457778888999999888766655433
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.16 E-value=0.048 Score=52.52 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCC--Cc---eEEEEEeCCccC--HHHHHHHHHHHcCCCCCcccccCHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNT--FD---CVIWVVVSKDLR--VEYIQEVIAKQMGFFDDSWRAKSVEEK 246 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F~---~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 246 (911)
.-.+++|+|..|.|||||++.+........+. ++ .+.++ .+... ...+.+.+.-. ... .-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 45689999999999999999998875221121 11 12222 22221 11233333210 110 11112233
Q ss_pred HHHHHHHccCCcEEEEEcccccccc---cccccccCCCCCCCCcEEEEEcCchhHhh
Q 042327 247 ALEIFNSLSEKKFVLLLDDVWERVD---LTKVGVPLPRPKNMASKVVFTTRSEEVCG 300 (911)
Q Consensus 247 ~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~s~iivTtR~~~v~~ 300 (911)
.-.+.+.+..++=++++|+.-..-| ...+...+. .. +..||++|.+.....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHHh
Confidence 3345566667777889998754322 222222222 11 356888888776543
No 315
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.33 Score=56.71 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=100.7
Q ss_pred CcccchhhHHHHH---HHHHcCC---------CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKV---WRCIVED---------PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l---~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
.++.|.++.+++| +++|.++ -.+-+.++|++|+|||-||++++-+. .+ . |+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gV--P-----F~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GV--P-----FFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CC--c-----eeeechH----
Confidence 3478888766655 5555542 24678899999999999999999987 22 2 4555543
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccccc-----------------ccccccccCCCCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERV-----------------DLTKVGVPLPRPK 283 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------------~~~~~~~~~~~~~ 283 (911)
+..+.+... ...+++.+...- ...+.++.+|+++... .+.++..-+....
T Consensus 379 ----EFvE~~~g~--------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ----EFVEMFVGV--------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ----HHHHHhccc--------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 111111110 123444444433 3467899999885321 1222222221011
Q ss_pred CC-CcEEEEEcCchhHhh--hcc---ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHH
Q 042327 284 NM-ASKVVFTTRSEEVCG--FME---AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALI 356 (911)
Q Consensus 284 ~~-~s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~ 356 (911)
.. +--++-+|+..++.+ .+. -++.+.++.=+.....++|..++..-.. +.+..++.+ |+...-|.+=|..
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHHHH
Confidence 11 223344555555532 122 3457788877888888999888765431 234556666 8888888875543
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.069 Score=51.73 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=63.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc--cCHHHHHHHHHHHcCCCCCc--ccc-------cC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD--LRVEYIQEVIAKQMGFFDDS--WRA-------KS 242 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~--~~~-------~~ 242 (911)
.-.+++|+|..|.|||||++.++.-.. .....+++.-... ..... ..+.++..... ... -+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhC
Confidence 457899999999999999999988752 1223333321110 01111 11112110000 000 01
Q ss_pred -HHHHHHHHHHHccCCcEEEEEcccccccc---cccccccCCCCCCCCcEEEEEcCchhHhhhccccceEEe
Q 042327 243 -VEEKALEIFNSLSEKKFVLLLDDVWERVD---LTKVGVPLPRPKNMASKVVFTTRSEEVCGFMEAHRKFKM 310 (911)
Q Consensus 243 -~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (911)
-+...-.+...+..++-++++|+....-| ...+...+. ....+..||++|.+...... ..+.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR-ALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11222235566667778999999854322 222222221 11124678888888766543 3344443
No 317
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.06 E-value=0.077 Score=63.42 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHHHcC---------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE---------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|-+..++.+.+.+.. .....+.++|+.|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999988888877752 124578999999999999999998876
No 318
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.1 Score=56.33 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
+.++|+++|.+|+||||++..++... . ... ..+..++.... ....+-++..++.++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 34799999999999999999998876 2 122 23444543221 1222333444445554321 13345555554443
Q ss_pred HccC-CcEEEEEccc
Q 042327 253 SLSE-KKFVLLLDDV 266 (911)
Q Consensus 253 ~l~~-k~~LlVlDdv 266 (911)
.-.. +.=++++|-.
T Consensus 315 lk~~~~~DvVLIDTa 329 (436)
T PRK11889 315 FKEEARVDYILIDTA 329 (436)
T ss_pred HHhccCCCEEEEeCc
Confidence 3221 2346677766
No 319
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.04 E-value=0.019 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999876
No 320
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.049 Score=52.90 Aligned_cols=120 Identities=21% Similarity=0.237 Sum_probs=60.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCC-CCC-c-ccc--------cC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGF-FDD-S-WRA--------KS 242 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~-~-~~~--------~~ 242 (911)
.-.+++|+|..|.|||||++.++.... .....+++.-....+.. ..+.+.++. ..+ . ... -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 456899999999999999999988651 12233333211100000 111111110 000 0 000 11
Q ss_pred -HHHHHHHHHHHccCCcEEEEEccccccccc---ccccccCCCCCCCCcEEEEEcCchhHhh
Q 042327 243 -VEEKALEIFNSLSEKKFVLLLDDVWERVDL---TKVGVPLPRPKNMASKVVFTTRSEEVCG 300 (911)
Q Consensus 243 -~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~~~~~~~~~s~iivTtR~~~v~~ 300 (911)
-+...-.+...+..++=++++|+.-..-|. ..+...+......|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 112233456667778889999998543322 1222222111123677899998876544
No 321
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.03 E-value=0.064 Score=58.29 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=36.4
Q ss_pred CcccchhhHHHHHHHHHcCC--------------CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVED--------------PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.++.++.+.-.+... ..+.|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899988888876555421 23678999999999999999999987
No 322
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.02 E-value=0.021 Score=57.45 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+..+|+|.|.+|+||||||+.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 323
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.02 E-value=0.03 Score=54.38 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEe
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVV 214 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v 214 (911)
+..-+.++|..|+|||.||..+.+.... +--.+.|+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~ 83 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITA 83 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeec
Confidence 3467999999999999999999988722 2234566643
No 324
>PRK14974 cell division protein FtsY; Provisional
Probab=95.02 E-value=0.17 Score=54.36 Aligned_cols=90 Identities=22% Similarity=0.209 Sum_probs=48.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC--HHHHHHHHHHHcCCCCCc-ccccCHHHHH-HH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR--VEYIQEVIAKQMGFFDDS-WRAKSVEEKA-LE 249 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 249 (911)
+..+|.++|+.|+||||++..++... . ...+ .++.+. .+.+. ..+-++..+..++..... ....+..... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46799999999999999998888776 2 2223 333343 22222 233455667777653211 1122232322 22
Q ss_pred HHHHccCCcEEEEEcccc
Q 042327 250 IFNSLSEKKFVLLLDDVW 267 (911)
Q Consensus 250 l~~~l~~k~~LlVlDdv~ 267 (911)
+...-....=++++|-.-
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222111222388888873
No 325
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.00 E-value=0.056 Score=54.71 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=70.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCC----------CC---ceEEEEEeCCccC------H--------------
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPN----------TF---DCVIWVVVSKDLR------V-------------- 220 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------~F---~~~~wv~vs~~~~------~-------------- 220 (911)
.-..++|+|+.|.|||||.+.+..-....++ .+ ..+.||+=...++ +
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 3479999999999999999999873311110 01 3466664111110 1
Q ss_pred --------HHHHHHHHHHcCCCCC---cccccCHHHH-HHHHHHHccCCcEEEEEcccccc------cccccccccCCCC
Q 042327 221 --------EYIQEVIAKQMGFFDD---SWRAKSVEEK-ALEIFNSLSEKKFVLLLDDVWER------VDLTKVGVPLPRP 282 (911)
Q Consensus 221 --------~~~~~~i~~~l~~~~~---~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~------~~~~~~~~~~~~~ 282 (911)
.+...+.++++++..- ....-+--+. ...|.+.|.+++=|++||+--.. ....++...+.
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~-- 186 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR-- 186 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--
Confidence 2445555666654321 1112222233 33467788899999999986432 22333333333
Q ss_pred CCCCcEEEEEcCchhHh
Q 042327 283 KNMASKVVFTTRSEEVC 299 (911)
Q Consensus 283 ~~~~s~iivTtR~~~v~ 299 (911)
..|.-|+++|-+-...
T Consensus 187 -~eg~tIl~vtHDL~~v 202 (254)
T COG1121 187 -QEGKTVLMVTHDLGLV 202 (254)
T ss_pred -HCCCEEEEEeCCcHHh
Confidence 2388899999987643
No 326
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.27 Score=52.83 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=38.0
Q ss_pred CcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-Hhhh-ccccceEEeccCCHHHHHHHHHHH
Q 042327 257 KKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSEE-VCGF-MEAHRKFKMVCLSDNDSWDLFQQK 325 (911)
Q Consensus 257 k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~ 325 (911)
++-++|+|++.... .-..+...+. ....+..+|++|.+.. +... .+....+.+.+++.+++.+.+.+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LE-ep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLE-EPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHH-hCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 34455667775431 2222222222 1123465777776654 3322 233567899999999998888653
No 327
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.00 E-value=0.17 Score=54.48 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=43.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCceEEEEEeCCccCHHHHHHHHHHHcCCC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGP----NTFDCVIWVVVSKDLRVEYIQEVIAKQMGFF 234 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 234 (911)
...++-|+|.+|+|||+++..++-.. ... ..-..++||+....+..+.+ .+|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 46789999999999999998877543 111 11237999999999888776 4567776654
No 328
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.98 E-value=0.08 Score=55.96 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=52.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
.-+++-|+|..|+||||||..+.... ...-..++||.+...++.. .++++++..+.. .....++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 45799999999999999999988876 2234578999988877654 445556544321 233444444444
Q ss_pred HHHccC-CcEEEEEccccc
Q 042327 251 FNSLSE-KKFVLLLDDVWE 268 (911)
Q Consensus 251 ~~~l~~-k~~LlVlDdv~~ 268 (911)
.+.++. .--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 444443 334888898843
No 329
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.98 E-value=0.15 Score=53.52 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876554
No 330
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.96 E-value=0.089 Score=52.62 Aligned_cols=163 Identities=16% Similarity=0.139 Sum_probs=80.1
Q ss_pred cccceEeecccccccc-----c-CCCCCCCCccEEEccCCCCC----CcCh------hHHhcCCcccEEEccCCCCc-cc
Q 042327 512 WENVRRLSLMQNEITN-----L-KEIPTCPHLLTLFLDNNESL----KIPN------DFFQYMHSLKVLNLSRIKLK-SF 574 (911)
Q Consensus 512 ~~~l~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~~~----~~~~------~~~~~l~~L~~L~L~~~~i~-~l 574 (911)
+..+..++|++|.|.. + ..+.+-.+|++.++++--.. .++. ..+-+|++|+..+||+|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3456667777776643 1 12344566666666654211 1111 11335666666666666544 23
Q ss_pred Cc----cccCCCCCCEEeecCCCCcccc--------------ccccCCccccEEeccccccccccChhh----hcCCccc
Q 042327 575 PL----GISKLVSLQQLDLSYSSIKELP--------------RELYALVNLKCLNLEHAEELITIPQQV----ISNFSRL 632 (911)
Q Consensus 575 p~----~i~~l~~L~~L~L~~~~i~~lp--------------~~~~~l~~L~~L~l~~~~~l~~lp~~~----i~~l~~L 632 (911)
|. -|+.-+.|.+|.+++|++-.+. ....+-+.|++.....| .+...|... +..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcCc
Confidence 32 2445566666666666554221 11233456666666655 344444321 1222456
Q ss_pred cEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHH
Q 042327 633 HVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQ 685 (911)
Q Consensus 633 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 685 (911)
+++.+..|.... .|........+..+++|+.|++..|.++...
T Consensus 188 k~vki~qNgIrp----------egv~~L~~~gl~y~~~LevLDlqDNtft~~g 230 (388)
T COG5238 188 KEVKIQQNGIRP----------EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG 230 (388)
T ss_pred eeEEeeecCcCc----------chhHHHHHHHHHHhCcceeeeccccchhhhh
Confidence 666666553221 0102223444556677777777766655433
No 331
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.92 E-value=0.048 Score=61.09 Aligned_cols=99 Identities=27% Similarity=0.249 Sum_probs=52.6
Q ss_pred HHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEE-EEEeCCcc-CHHHHHHHHHHHcCC-CCCcc--c
Q 042327 166 VWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVI-WVVVSKDL-RVEYIQEVIAKQMGF-FDDSW--R 239 (911)
Q Consensus 166 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~-wv~vs~~~-~~~~~~~~i~~~l~~-~~~~~--~ 239 (911)
+++.+.. ..-....|+|.+|+|||||++.|.+... +.+-++.+ .+-|.+.. .+.++.+.+-..+-. ..+.. .
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~ 483 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 483 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHH
Confidence 3444433 3456788999999999999999998652 22334333 33444432 333443333111111 11100 0
Q ss_pred ccCHHHHHHHHHHHc--cCCcEEEEEccc
Q 042327 240 AKSVEEKALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 240 ~~~~~~~~~~l~~~l--~~k~~LlVlDdv 266 (911)
.......+-.+.+++ .++.+||++|++
T Consensus 484 ~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 484 HTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 111122223344444 689999999999
No 332
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.92 E-value=0.038 Score=61.30 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++||++.++.+...+..+ .-|.|.|.+|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 35899999999998888765 357899999999999999999876
No 333
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.91 E-value=0.033 Score=56.95 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++..+|+|.|..|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999887
No 334
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.27 Score=56.79 Aligned_cols=152 Identities=15% Similarity=0.168 Sum_probs=85.5
Q ss_pred cccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 155 TVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
.+.|.+..++.+.+.+.- ...+.+.++|++|.|||.||+++++.. ...|-.+. ..
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~-----~~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVK-----GS---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEee-----CH----
Confidence 355666666555444321 245689999999999999999999965 34443222 11
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccccc-------------cccccCCC-CCCCCc
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLT-------------KVGVPLPR-PKNMAS 287 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-------------~~~~~~~~-~~~~~s 287 (911)
.+... +................+..+..|.+|+++....+. ++...+.. ....+-
T Consensus 311 ----~l~sk-------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 ----ELLSK-------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred ----HHhcc-------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 01110 112223333333444446788999999995422111 11111210 122233
Q ss_pred EEEEEcCchhHhh---hc--cccceEEeccCCHHHHHHHHHHHhcCc
Q 042327 288 KVVFTTRSEEVCG---FM--EAHRKFKMVCLSDNDSWDLFQQKVGKE 329 (911)
Q Consensus 288 ~iivTtR~~~v~~---~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (911)
.||-||....... .. .-...+.+..-+.++..+.|.......
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 4555555444322 11 235578888889999999999988643
No 335
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.89 E-value=0.11 Score=53.67 Aligned_cols=88 Identities=22% Similarity=0.187 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHH-cC---CCCCcccccCHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQ-MG---FFDDSWRAKSVEEKALE 249 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~---~~~~~~~~~~~~~~~~~ 249 (911)
..+++=|+|+.|+||||+|.+++-.. ...-..++|++.-+.+++..+.. ++.. +. .... .......+.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~-~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQP-DTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecC-CCHHHHHHHHHH
Confidence 56899999999999999999877766 33444899999999999876643 3333 22 1110 011122233444
Q ss_pred HHHHccCCcEEEEEccc
Q 042327 250 IFNSLSEKKFVLLLDDV 266 (911)
Q Consensus 250 l~~~l~~k~~LlVlDdv 266 (911)
+......+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444445679999988
No 336
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.89 E-value=1.2 Score=44.98 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=115.1
Q ss_pred ccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccC---CCCCceEEEEEeCCc----------c----
Q 042327 156 VVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEG---PNTFDCVIWVVVSKD----------L---- 218 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F~~~~wv~vs~~----------~---- 218 (911)
+.++++....+......+..+-..++|+.|.||-|.+..+.++...+ +-+-+...|.+.|.. +
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 56777777777777666678899999999999999888877765221 123345555543332 1
Q ss_pred -------CHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcE-EEEEcccccc--cccccccccCCCCCCCCcE
Q 042327 219 -------RVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKF-VLLLDDVWER--VDLTKVGVPLPRPKNMASK 288 (911)
Q Consensus 219 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~ 288 (911)
.-+.+.++|++++.-... . +.-..+.| ++|+-.+++. +....+..... .-...+|
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q------i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME-kYs~~~R 159 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ------I--------ETQGQRPFKVVVINEADELTRDAQHALRRTME-KYSSNCR 159 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc------h--------hhccccceEEEEEechHhhhHHHHHHHHHHHH-HHhcCce
Confidence 112333333333321110 0 01122344 4555555321 11111211111 1123456
Q ss_pred EEEEcCchh--HhhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC-hhHHHHHHhh-hcC
Q 042327 289 VVFTTRSEE--VCGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL-PLALITIGRA-MAC 364 (911)
Q Consensus 289 iivTtR~~~--v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~-Plai~~~~~~-l~~ 364 (911)
+|+...+.. +...-+..-.+++..-+++|....+++.+..+....+ ++++++|+++++|. -.|+-++-.. +.+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 665544322 2222223346799999999999999998876654333 57899999999985 4455444221 111
Q ss_pred C--------CCHHHHHHHHHHHhhc
Q 042327 365 K--------KTPEEWRYAIQLLSSS 381 (911)
Q Consensus 365 ~--------~~~~~w~~~~~~l~~~ 381 (911)
. -...+|+-+.......
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHH
Confidence 1 1356798877765544
No 337
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.88 E-value=0.59 Score=49.93 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=35.2
Q ss_pred eEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 307 KFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 307 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
++++++++.+|+..++.-............-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999988765543222333445667777778988643
No 338
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.041 Score=53.28 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 339
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.86 E-value=0.091 Score=58.09 Aligned_cols=88 Identities=23% Similarity=0.224 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHc-----CCCCCcccccCHH----
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQM-----GFFDDSWRAKSVE---- 244 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~---- 244 (911)
.-..++|+|..|+|||||++.+.... .....+++...-+..++.++....+... ..-.. .+.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q-sd~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT-SDESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc-CCCCHHHHHHH
Confidence 44689999999999999999887654 1223445544334445555444433332 11000 0111111
Q ss_pred -HHHHHHHHHc--cCCcEEEEEccc
Q 042327 245 -EKALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 245 -~~~~~l~~~l--~~k~~LlVlDdv 266 (911)
..+-.+.+++ +++.+|+++||+
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122233443 589999999999
No 340
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.86 E-value=0.024 Score=56.99 Aligned_cols=26 Identities=42% Similarity=0.635 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|+|++|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 341
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.86 E-value=0.1 Score=54.26 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=28.9
Q ss_pred HHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 166 VWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 166 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+++.+.+..+|.|+|..|+|||||+..+.+..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445555689999999999999999999999986
No 342
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.85 E-value=0.071 Score=49.89 Aligned_cols=104 Identities=23% Similarity=0.353 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
.-.+++|+|..|.|||||++.+..... .....+++.-.. .++... +-..-+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 457899999999999999999988752 122333332100 000000 000112223334556
Q ss_pred ccCCcEEEEEcccccccc---cccccccCCCCCCCCcEEEEEcCchhHhh
Q 042327 254 LSEKKFVLLLDDVWERVD---LTKVGVPLPRPKNMASKVVFTTRSEEVCG 300 (911)
Q Consensus 254 l~~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~s~iivTtR~~~v~~ 300 (911)
+..++-++++|+.-..-| ...+...+. .- +..||++|.+.....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALK-EY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc--CCEEEEEECCHHHHH
Confidence 666777899999854322 222322222 11 246888887766543
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.84 E-value=0.12 Score=53.89 Aligned_cols=89 Identities=22% Similarity=0.199 Sum_probs=48.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH--HHHHHHHHHHcCCCCCc-ccccCHHHH-HHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV--EYIQEVIAKQMGFFDDS-WRAKSVEEK-ALE 249 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 249 (911)
+.++|.++|++|+||||.+..++... . ..-..+.+++.. .+.. .+-+...++..+...-. ....+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46899999999999999999988776 2 222345566543 2222 23334445555432100 011222222 233
Q ss_pred HHHHccCCcEEEEEccc
Q 042327 250 IFNSLSEKKFVLLLDDV 266 (911)
Q Consensus 250 l~~~l~~k~~LlVlDdv 266 (911)
+.....+..=++++|-.
T Consensus 147 l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 33333344457777876
No 344
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.83 E-value=0.024 Score=56.05 Aligned_cols=26 Identities=38% Similarity=0.393 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998775
No 345
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.81 E-value=0.064 Score=54.62 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=59.5
Q ss_pred cccchhhHHHHHHHHHcC-------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHH
Q 042327 155 TVVGLESTLQKVWRCIVE-------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVI 227 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 227 (911)
.++|..-.++.|+..+.+ .+.-|++.+|..|+||..+++.++++..+...+-+ ..+..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHHh
Confidence 367777777777776653 25669999999999999999999998732211111 12222
Q ss_pred HHHcCCCCCcccccCHHHHHHHHHHHcc-CCcEEEEEcccccc
Q 042327 228 AKQMGFFDDSWRAKSVEEKALEIFNSLS-EKKFVLLLDDVWER 269 (911)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~ 269 (911)
......+.......--+++...++..++ -+|.|+|+|+++..
T Consensus 148 vat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 148 VATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 2333322211111122344444544443 37899999999753
No 346
>PRK04328 hypothetical protein; Provisional
Probab=94.81 E-value=0.11 Score=53.65 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD 217 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~ 217 (911)
.-+++.|.|.+|+|||+||.++.... -..-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 56899999999999999999876553 122456788887664
No 347
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.26 Score=52.98 Aligned_cols=88 Identities=20% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
+.+++.++|+.|+||||++..++... ... -..+.+|+.... ....+-++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46899999999999999999988766 212 234666665432 2234455666666665321 23345555544443
Q ss_pred Hcc-CCcEEEEEccc
Q 042327 253 SLS-EKKFVLLLDDV 266 (911)
Q Consensus 253 ~l~-~k~~LlVlDdv 266 (911)
.-. +..=+|++|-.
T Consensus 280 l~~~~~~D~VLIDTA 294 (407)
T PRK12726 280 MTYVNCVDHILIDTV 294 (407)
T ss_pred HHhcCCCCEEEEECC
Confidence 321 33456777776
No 348
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.80 E-value=0.059 Score=50.12 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHH
Q 042327 178 IGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQE 225 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 225 (911)
|.++|..|+|||+||+.+++.. . ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 6799999999999999999886 1 2234567777777776654
No 349
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.80 E-value=1.1 Score=47.51 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 160 ESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 160 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
......++.++..+ +.|.|.|..|+||||+|+.++...
T Consensus 51 ~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 51 KATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred HHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH
Confidence 34455666666543 468999999999999999999987
No 350
>PRK03839 putative kinase; Provisional
Probab=94.78 E-value=0.023 Score=55.62 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 351
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.78 E-value=0.12 Score=53.28 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=58.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCC-----cccccCHHH-
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFL-EGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDD-----SWRAKSVEE- 245 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 245 (911)
+-..++|.|..|+|||+|+..+.+... ..+.+-+.++++-+.+.. ...++..++...-.+... .........
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 446789999999999999999887751 012335778888887754 566777766654222110 001111111
Q ss_pred ----HHHHHHHHc---cCCcEEEEEcccc
Q 042327 246 ----KALEIFNSL---SEKKFVLLLDDVW 267 (911)
Q Consensus 246 ----~~~~l~~~l---~~k~~LlVlDdv~ 267 (911)
.+-.+.+++ +++++|+++||+-
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 122344555 3789999999993
No 352
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.025 Score=54.79 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999998
No 353
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.75 E-value=0.12 Score=52.11 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 354
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.74 E-value=0.2 Score=51.19 Aligned_cols=41 Identities=29% Similarity=0.382 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD 217 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~ 217 (911)
.-..+.|.|.+|+||||+|..+..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 568999999999999999998765541 12346788876443
No 355
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.73 E-value=0.15 Score=51.04 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=56.9
Q ss_pred HHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHHHHHcCCCCC----ccc
Q 042327 166 VWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVIAKQMGFFDD----SWR 239 (911)
Q Consensus 166 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~----~~~ 239 (911)
.++.+.. .+-..++|.|.+|+|||+|+..+.+.. .-+.++++.+.+. ....++.+++...-..... ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 3444433 234678999999999999999999986 1345578877765 4566666666443111100 001
Q ss_pred ccCHH----------HHHHHHHHHccCCcEEEEEccc
Q 042327 240 AKSVE----------EKALEIFNSLSEKKFVLLLDDV 266 (911)
Q Consensus 240 ~~~~~----------~~~~~l~~~l~~k~~LlVlDdv 266 (911)
..... ..++.++. +++.+|+++||+
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hhhHHHHhhhhccchhhhHHHhh--cCCceeehhhhh
Confidence 11111 12223333 789999999999
No 356
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.73 E-value=0.21 Score=53.66 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=42.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCceEEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGP----NTFDCVIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
...++-|+|.+|+||||++..++-.. ... ..-..++||+....++.+.+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46899999999999999999987664 111 011379999998888877654 44555544
No 357
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.67 E-value=0.069 Score=58.72 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=53.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----cccccCHHH---
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDD----SWRAKSVEE--- 245 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~--- 245 (911)
.-..++|+|..|+|||||++.+.... ..+.++.+-+.+.. .+.++.+.++..-++... ...+.+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45789999999999999999988754 22555566665543 345566665444222110 001111111
Q ss_pred ---HHHHHHHHc--cCCcEEEEEccc
Q 042327 246 ---KALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 246 ---~~~~l~~~l--~~k~~LlVlDdv 266 (911)
.+-.+.+++ +++.+|+++||+
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 122244444 689999999999
No 358
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.64 E-value=0.16 Score=55.59 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCceEEEEEeCCc-cCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGP-NTFDCVIWVVVSKD-LRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIF 251 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (911)
..++|.++|..|+||||.+..++..+.... .+-..+..+++... ....+-++..++.++.+.. ......++...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 347999999999999999999888762111 12234555554431 1223336666666665431 2234445544444
Q ss_pred HHccCCcEEEEEccc
Q 042327 252 NSLSEKKFVLLLDDV 266 (911)
Q Consensus 252 ~~l~~k~~LlVlDdv 266 (911)
+. .+.-++++|.+
T Consensus 251 ~~--~~~DlVLIDTa 263 (388)
T PRK12723 251 QS--KDFDLVLVDTI 263 (388)
T ss_pred Hh--CCCCEEEEcCC
Confidence 43 34558888888
No 359
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=3.1 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+--.++|++|.|||+++.++++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 567799999999999999999987
No 360
>PTZ00035 Rad51 protein; Provisional
Probab=94.63 E-value=0.32 Score=52.58 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=55.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccC----CCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc-------cccC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEG----PNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW-------RAKS 242 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 242 (911)
...++.|+|..|+|||||+..++-.. .. ...-..++|++....++.+.+ .++++..+...+.. ...+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 56899999999999999999887544 11 112246789998887777664 45566655432110 1122
Q ss_pred HHHHHHH---HHHHc-cCCcEEEEEccc
Q 042327 243 VEEKALE---IFNSL-SEKKFVLLLDDV 266 (911)
Q Consensus 243 ~~~~~~~---l~~~l-~~k~~LlVlDdv 266 (911)
.++.... +...+ ..+--|||+|-+
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 3333332 22233 234458888888
No 361
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.62 E-value=0.065 Score=62.50 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=57.0
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.. . ...++..+|..- ...+...+++.++.+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 45889988888887777655 468899999999999999999876 2 345688888766 34467777888877665
No 362
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.60 E-value=0.035 Score=56.26 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 042327 178 IGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|.|.|++|+||||+|+.+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999886
No 363
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.58 E-value=0.025 Score=50.48 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCce
Q 042327 178 IGIYGMGGVGKTTLLTHINNKFLEGPNTFDC 208 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~ 208 (911)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999987 556643
No 364
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.56 E-value=0.097 Score=58.33 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=58.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----cccccCHH----
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDD----SWRAKSVE---- 244 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 244 (911)
+-..++|.|.+|+|||||+..+.+.. . +.+-+.++++-+.+.. .+.++...+...-.+... .....+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 45679999999999999999988886 2 2356788888776543 456666666554221110 00111111
Q ss_pred --HHHHHHHHHc---cCCcEEEEEccc
Q 042327 245 --EKALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 245 --~~~~~l~~~l---~~k~~LlVlDdv 266 (911)
..+-.+.+++ +++.+|+++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1223355555 379999999999
No 365
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.54 E-value=0.057 Score=53.07 Aligned_cols=50 Identities=30% Similarity=0.424 Sum_probs=33.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFD 235 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 235 (911)
.|+|+|-||+||||+|..+...... ++. ..+.-|+...+++. ..+++...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~-~~VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGG-YNVLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCC-ceEEEEeCCCCCCh-------HHhcCCCC
Confidence 5899999999999999996666522 222 34556666665554 45566554
No 366
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.05 Score=51.89 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
+-.+++|+|..|.|||||++.+.... . .....+++........ ........++... +-..-+...-.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~-~---~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~---qlS~G~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL-K---PTSGEILIDGKDIAKL--PLEELRRRIGYVP---QLSGGQRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C---CCccEEEECCEEcccC--CHHHHHhceEEEe---eCCHHHHHHHHHHHH
Confidence 34789999999999999999998875 1 2334444432211110 0011112222110 001112333345556
Q ss_pred ccCCcEEEEEcccccccc---cccccccCCCCCCCCcEEEEEcCchhHhhh
Q 042327 254 LSEKKFVLLLDDVWERVD---LTKVGVPLPRPKNMASKVVFTTRSEEVCGF 301 (911)
Q Consensus 254 l~~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~s~iivTtR~~~v~~~ 301 (911)
+...+-++++|+.-...| ...+...+......+..++++|.+......
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 666678999999854322 222221111011225678888887765544
No 367
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.52 E-value=0.064 Score=47.77 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=34.4
Q ss_pred cccchhhHHHHHHHHHc----C---CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIV----E---DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.+-..+.+++.+. + ++.-|++.+|..|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46777666666666554 2 356799999999999999999988884
No 368
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.52 E-value=0.12 Score=49.27 Aligned_cols=117 Identities=18% Similarity=0.104 Sum_probs=61.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEE---EEEeCCccCHHHHHHHHHHHcC---CCCC-cccccC-----
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVI---WVVVSKDLRVEYIQEVIAKQMG---FFDD-SWRAKS----- 242 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~---wv~vs~~~~~~~~~~~i~~~l~---~~~~-~~~~~~----- 242 (911)
...|-|++..|.||||.|..+.-+.. ...+ .++ |+...........+... .+. .... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 46788999999999999998877761 2222 232 33333223333344332 110 0000 011111
Q ss_pred --HHHHHHHHHHHccCCc-EEEEEccccc-----ccccccccccCCCCCCCCcEEEEEcCchh
Q 042327 243 --VEEKALEIFNSLSEKK-FVLLLDDVWE-----RVDLTKVGVPLPRPKNMASKVVFTTRSEE 297 (911)
Q Consensus 243 --~~~~~~~l~~~l~~k~-~LlVlDdv~~-----~~~~~~~~~~~~~~~~~~s~iivTtR~~~ 297 (911)
..+.....++.+...+ =|||||++-. ..+.+++...+. ....+..||+|-|+..
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCCC
Confidence 1112233444454444 4999999842 233334444343 3445679999999763
No 369
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.12 Score=56.45 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 370
>PRK00625 shikimate kinase; Provisional
Probab=94.48 E-value=0.029 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.++||.|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998886
No 371
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.46 E-value=0.065 Score=48.75 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.+.|.-|+||||+++.+++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44689999999999999999999986
No 372
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.0067 Score=57.91 Aligned_cols=67 Identities=21% Similarity=0.381 Sum_probs=37.8
Q ss_pred ccCcccEEEeecccccccc--cccc-cCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCc
Q 042327 752 VFHGLHTVHIEVCLTLKDL--TFLV-FAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRS 828 (911)
Q Consensus 752 ~l~~L~~L~L~~c~~l~~l--~~l~-~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 828 (911)
.++.++.|.+.+|..+.+. ..++ ..|+|+.|+|++|+.+++-.- ..+..|++|+.|.|.+++.+..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------ACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HHHHHhhhhHHHHhcCchhhhc
Confidence 4555666666666555542 2222 356667777776666665311 1455666777777766665544
Q ss_pred c
Q 042327 829 I 829 (911)
Q Consensus 829 i 829 (911)
.
T Consensus 192 ~ 192 (221)
T KOG3864|consen 192 L 192 (221)
T ss_pred h
Confidence 3
No 373
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.43 E-value=0.069 Score=55.60 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=56.9
Q ss_pred cchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 042327 157 VGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDD 236 (911)
Q Consensus 157 vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 236 (911)
.|...+..+.+..+......+|.|.|..|+||||+++.+.+... ..-..++.+.-...+... . ..+....
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~----~-~~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIP----G-INQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCC----C-ceEEEeC--
Confidence 45444444444444444557899999999999999998877651 111123333211111110 0 0111111
Q ss_pred cccccCHHHHHHHHHHHccCCcEEEEEcccccccccc
Q 042327 237 SWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLT 273 (911)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 273 (911)
..........++..++..+=.++++++.+.+...
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 1111234556677778888899999997765544
No 374
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.42 E-value=0.028 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.|.+.|.+|+||||+|+++....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999998887
No 375
>PRK04040 adenylate kinase; Provisional
Probab=94.39 E-value=0.034 Score=54.58 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|+|+|++|+||||+++.+.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999887
No 376
>PRK08149 ATP synthase SpaL; Validated
Probab=94.39 E-value=0.16 Score=55.95 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=51.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCCC-----cccccCH----
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFDD-----SWRAKSV---- 243 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~-----~~~~~~~---- 243 (911)
+-..++|+|..|+|||||+..++... .-+.++...+.. ..++.++..+.......... ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45689999999999999999988764 123333444433 33555666666654322110 0011111
Q ss_pred -HHHHHHHHHHc--cCCcEEEEEccc
Q 042327 244 -EEKALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 244 -~~~~~~l~~~l--~~k~~LlVlDdv 266 (911)
...+..+.+++ +++.+||++||+
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccch
Confidence 11222344444 589999999999
No 377
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.37 E-value=0.13 Score=56.67 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.++|..|+||||+|..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988766
No 378
>PRK05922 type III secretion system ATPase; Validated
Probab=94.37 E-value=0.12 Score=57.01 Aligned_cols=88 Identities=15% Similarity=0.221 Sum_probs=50.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCCCc----ccccCH-H---
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFDDS----WRAKSV-E--- 244 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~-~--- 244 (911)
+-..++|+|..|+|||||++.+.... ..+....+.+.. .....+.+.+..........- ....+. .
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45679999999999999999998764 123333333333 333445555544433221100 011111 1
Q ss_pred --HHHHHHHHHc--cCCcEEEEEccc
Q 042327 245 --EKALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 245 --~~~~~l~~~l--~~k~~LlVlDdv 266 (911)
..+-.+.+++ +++.+|+++||+
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122344554 589999999999
No 379
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.36 E-value=0.25 Score=51.43 Aligned_cols=125 Identities=17% Similarity=0.077 Sum_probs=65.9
Q ss_pred HHHHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEE---eCCccCHHHHHHHHHHHcC-CCCCc
Q 042327 163 LQKVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVV---VSKDLRVEYIQEVIAKQMG-FFDDS 237 (911)
Q Consensus 163 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~i~~~l~-~~~~~ 237 (911)
.+.++..+.. ....-++|+|..|.|||||++.+..... .....+++. +...... .+++.... .....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhccccccc
Confidence 3444444443 3457899999999999999999998762 122233331 1111112 23332221 11110
Q ss_pred c-cc---cCHHHHHHHHHHHcc-CCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHh
Q 042327 238 W-RA---KSVEEKALEIFNSLS-EKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVC 299 (911)
Q Consensus 238 ~-~~---~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~ 299 (911)
. .. .+-......+...+. ..+=++++|++-....+..+...+ ..|..||+||-+..+.
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHHH
Confidence 0 00 000111222333332 478899999996655555443332 2477899999876653
No 380
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.35 E-value=0.16 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|.|||||++.+....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 381
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.34 E-value=0.078 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|+|.|..|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 382
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.32 E-value=0.2 Score=53.33 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=51.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeC-CccCHHHHHHHHHHHcCCCCC-----cccccCHH---
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVS-KDLRVEYIQEVIAKQMGFFDD-----SWRAKSVE--- 244 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 244 (911)
....++|+|..|+|||||++.+.... . -+..+..-+. +..+..++.......-++... ..+.....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45688999999999999999988765 1 2333334433 344556666655554322110 00111111
Q ss_pred --HHHHHHHHHc--cCCcEEEEEccc
Q 042327 245 --EKALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 245 --~~~~~l~~~l--~~k~~LlVlDdv 266 (911)
..+-.+.+++ +++.+|+++||+
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122233333 589999999998
No 383
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.30 E-value=0.093 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999998876
No 384
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.29 E-value=0.063 Score=52.71 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEe
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVV 214 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v 214 (911)
.++|.|+|+.|+|||||++.+.... ...|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 567865555543
No 385
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.29 E-value=0.03 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999886
No 386
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.26 E-value=0.24 Score=50.48 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
...++.|.|..|+||||+|.++..... +.. ..+++++... +..++.+.+ ++++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 456999999999999999866655441 111 3456666333 445666665 3444
No 387
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.24 E-value=0.11 Score=48.93 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 388
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.22 E-value=0.075 Score=54.30 Aligned_cols=59 Identities=25% Similarity=0.347 Sum_probs=42.5
Q ss_pred HHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHH
Q 042327 164 QKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYI 223 (911)
Q Consensus 164 ~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 223 (911)
.+++..+.. ++..+|+|.|.+|+|||||.-.+...+ ...++--.++-|+-|.+++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 455555543 577899999999999999999998887 33455556667777776654333
No 389
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.22 E-value=0.032 Score=54.35 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 390
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.20 E-value=0.15 Score=49.29 Aligned_cols=119 Identities=18% Similarity=0.085 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC---ccCHHHHHHHHH--HHcCCCCC-cccccCH----
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK---DLRVEYIQEVIA--KQMGFFDD-SWRAKSV---- 243 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~--~~l~~~~~-~~~~~~~---- 243 (911)
....|-|+|..|-||||.|..+.-+. ..+=-.+..|..-. .......+..+- ........ .+...+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 34689999999999999999887775 12222333333322 223333333310 00000000 0111111
Q ss_pred ---HHHHHHHHHHccC-CcEEEEEccccc-----ccccccccccCCCCCCCCcEEEEEcCch
Q 042327 244 ---EEKALEIFNSLSE-KKFVLLLDDVWE-----RVDLTKVGVPLPRPKNMASKVVFTTRSE 296 (911)
Q Consensus 244 ---~~~~~~l~~~l~~-k~~LlVlDdv~~-----~~~~~~~~~~~~~~~~~~s~iivTtR~~ 296 (911)
.+.....++.+.. +-=+||||++-. ..+.+++...+. ....+..||+|-|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN-ARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH-cCCCCCEEEEECCCC
Confidence 1122334455544 445999999832 233444444443 344567999999975
No 391
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.20 E-value=0.14 Score=50.76 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-------ceEEEEEeCCc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF-------DCVIWVVVSKD 217 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-------~~~~wv~vs~~ 217 (911)
..++.|.|.+|+||||++..+..........| ..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 35889999999999999999888763221122 36788876665
No 392
>PRK05439 pantothenate kinase; Provisional
Probab=94.20 E-value=0.31 Score=51.57 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999988765
No 393
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.19 E-value=0.085 Score=53.16 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=36.7
Q ss_pred HHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC
Q 042327 162 TLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR 219 (911)
Q Consensus 162 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~ 219 (911)
...++++.+.. .+..+|+|.|.+|+|||||...+...+. .+++--.++-|+-|.+++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCC
Confidence 34455555543 4778999999999999999999988873 233334556666665554
No 394
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.096 Score=51.95 Aligned_cols=45 Identities=27% Similarity=0.391 Sum_probs=34.7
Q ss_pred cccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++=|-.+.++++-+.+.- +..+-|..+|++|.|||-+|++|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 345666777777665432 356778899999999999999999986
No 395
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.15 E-value=0.18 Score=55.79 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----cccccCHH----
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDD----SWRAKSVE---- 244 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 244 (911)
+-..++|+|..|+|||||++.+++.. . .+.++++-+.+.. .+.++..+.+..-++... .....+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-D----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-C----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 55789999999999999999998765 1 2455556555543 344555545443221110 00111111
Q ss_pred --HHHHHHHHHc--cCCcEEEEEccc
Q 042327 245 --EKALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 245 --~~~~~l~~~l--~~k~~LlVlDdv 266 (911)
..+-.+.+++ +++.+|+++||+
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122244444 589999999999
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.15 E-value=0.25 Score=54.56 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=36.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCC
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFD 235 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 235 (911)
..+|+++|..|+||||++..+.... ......+.+..++... .....+-+...++.++++.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 4799999999999999999887754 1112223344444322 1223344556666666543
No 397
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.12 E-value=0.074 Score=55.55 Aligned_cols=88 Identities=19% Similarity=0.348 Sum_probs=48.2
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCH
Q 042327 164 QKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSV 243 (911)
Q Consensus 164 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 243 (911)
..+++.+...+ +-|.++|+.|+|||++++...... . ...| ...-++.|.......+++.|-..+.....
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~------- 91 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG------- 91 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT-------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC-------
Confidence 33455554443 566899999999999999988765 2 2222 23445555554444443322222211000
Q ss_pred HHHHHHHHHHccCCcEEEEEcccc
Q 042327 244 EEKALEIFNSLSEKKFVLLLDDVW 267 (911)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~ 267 (911)
....--.+|+.++.+||+.
T Consensus 92 -----~~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 92 -----RVYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp -----EEEEEESSSEEEEEEETTT
T ss_pred -----CCCCCCCCcEEEEEecccC
Confidence 0000114688899999983
No 398
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.12 E-value=0.14 Score=50.32 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD 217 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~ 217 (911)
++.|.|.+|+|||++|..+..... ..=..++|++...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC
Confidence 367999999999999999877652 22245778876543
No 399
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.12 E-value=0.044 Score=50.85 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK 216 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~ 216 (911)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999982 23455454555444
No 400
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.10 E-value=0.37 Score=52.04 Aligned_cols=86 Identities=23% Similarity=0.233 Sum_probs=47.2
Q ss_pred HHHHHHHHcCC----CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCCCc
Q 042327 163 LQKVWRCIVED----PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFDDS 237 (911)
Q Consensus 163 ~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~ 237 (911)
...+..++.++ +.++|.+||+.|+||||-..+++..+ .....=..+..|+... .....+-++.-++-++++-.
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~- 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE- 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-
Confidence 34444454443 47899999999999975444444444 1122334566665433 22344555666666666542
Q ss_pred ccccCHHHHHHHHH
Q 042327 238 WRAKSVEEKALEIF 251 (911)
Q Consensus 238 ~~~~~~~~~~~~l~ 251 (911)
...+..++...+.
T Consensus 265 -vv~~~~el~~ai~ 277 (407)
T COG1419 265 -VVYSPKELAEAIE 277 (407)
T ss_pred -EecCHHHHHHHHH
Confidence 2334455544443
No 401
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.09 E-value=0.035 Score=48.92 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 042327 178 IGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988876
No 402
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.09 E-value=0.034 Score=55.40 Aligned_cols=23 Identities=48% Similarity=0.679 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 403
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.2 Score=50.81 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=59.6
Q ss_pred CcccchhhHHHHHHHHHc----------CC--CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIV----------ED--PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
+++.|.+..++.+.+.+. .. ..+-|.++|++|.||+.||++|+-+. .. -|++||...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSSD--- 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSSD--- 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehHH---
Confidence 457899998888877653 11 36789999999999999999999986 22 234454431
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEcccc
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVW 267 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 267 (911)
+..... ...+.+...+.+.- ++|+.+|.+|.++
T Consensus 202 -----LvSKWm--------GESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 202 -----LVSKWM--------GESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred -----HHHHHh--------ccHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 111111 12344555555544 4688999999995
No 404
>PRK06217 hypothetical protein; Validated
Probab=94.06 E-value=0.04 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.|.|.+|+||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999886
No 405
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.04 E-value=0.19 Score=51.78 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=50.1
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCceE-EEEEeCCc-cCHHHHHHHHHHHcCCCCC-----cccccCHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLL-THINNKFLEGPNTFDCV-IWVVVSKD-LRVEYIQEVIAKQMGFFDD-----SWRAKSVEE 245 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~-~wv~vs~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~ 245 (911)
+-..++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+. ....++.+++...-..... ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4467899999999999996 5565543 22333 55666554 3456666666644221110 001111111
Q ss_pred -----HHHHHHHHc--cCCcEEEEEcccc
Q 042327 246 -----KALEIFNSL--SEKKFVLLLDDVW 267 (911)
Q Consensus 246 -----~~~~l~~~l--~~k~~LlVlDdv~ 267 (911)
.+-.+.+++ +++.+|+|+||+-
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 112223333 5899999999993
No 406
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.04 E-value=0.11 Score=57.28 Aligned_cols=89 Identities=25% Similarity=0.270 Sum_probs=50.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCC-----cccccCHHH---
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDD-----SWRAKSVEE--- 245 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~--- 245 (911)
.-..++|+|..|+|||||++.+.... + ....++....-+...+.++.+..+..-++... ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 45689999999999999999888765 1 12223332223344455555555444222110 001111111
Q ss_pred --HHHHHHHHc--cCCcEEEEEccc
Q 042327 246 --KALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 246 --~~~~l~~~l--~~k~~LlVlDdv 266 (911)
.+-.+.+++ +++.+|+++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 122244544 578999999999
No 407
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.02 E-value=0.061 Score=50.39 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEE
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVV 213 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 213 (911)
.||-|.|.+|+||||||+.+..... ..-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 5899999999999999999999982 2234455553
No 408
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.00 E-value=0.15 Score=55.64 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=37.2
Q ss_pred CcccchhhHHHHHHHHHcC---------C-----CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE---------D-----PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.+..++.+..++.. + ..+.|.++|+.|+||||+|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999988888766632 0 13678999999999999999998886
No 409
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.32 Score=52.13 Aligned_cols=95 Identities=22% Similarity=0.348 Sum_probs=59.3
Q ss_pred HHHHHHHHcCC--CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc--
Q 042327 163 LQKVWRCIVED--PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW-- 238 (911)
Q Consensus 163 ~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-- 238 (911)
+.++-+.|..+ .-.+|.|-|-+|+|||||.-++..+.. ..- .+.+|+--+... + .+--+++++...+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~--Q-iklRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQ--Q-IKLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHH--H-HHHHHHHhCCCccceEE
Confidence 34444444443 457999999999999999999999982 222 677776554432 2 234456666544321
Q ss_pred -cccCHHHHHHHHHHHccCCcEEEEEcccc
Q 042327 239 -RAKSVEEKALEIFNSLSEKKFVLLLDDVW 267 (911)
Q Consensus 239 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (911)
...+.+...+.+.+ .++-++|+|-+.
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 23334444444333 678899999984
No 410
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.99 E-value=0.15 Score=56.55 Aligned_cols=91 Identities=15% Similarity=0.226 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----cccccCHH----
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDD----SWRAKSVE---- 244 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 244 (911)
.-..++|.|..|+|||||+..+.... . .++=+.++++-+.+.. .+.++.+++...-..... .....+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~-~-~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNI-A-KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45679999999999999999987765 2 1222467777776543 456677776654222110 00111111
Q ss_pred --HHHHHHHHHc---cCCcEEEEEccc
Q 042327 245 --EKALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 245 --~~~~~l~~~l---~~k~~LlVlDdv 266 (911)
..+-.+.+++ +++.+||++|++
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecch
Confidence 1223355665 679999999999
No 411
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.96 E-value=0.049 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999987
No 412
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.95 E-value=0.17 Score=57.04 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
...++.|.|.+|+|||||+..++.... ..-..++|++..+. ..++.. -++.++...+.. ...+.+.+.+.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 457999999999999999999988762 22245788876543 333322 245555432211 122334443333
Q ss_pred HHHccCCcEEEEEcccc
Q 042327 251 FNSLSEKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l~~k~~LlVlDdv~ 267 (911)
.+ .+.-++|+|.+.
T Consensus 153 ~~---~~~~lVVIDSIq 166 (446)
T PRK11823 153 EE---EKPDLVVIDSIQ 166 (446)
T ss_pred Hh---hCCCEEEEechh
Confidence 22 355578888873
No 413
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.94 E-value=0.17 Score=59.36 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=51.0
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++|.++.++.+...+.... -+.++|+.|+||||+|+.+.+.. . ...|...+++.-+ ..+...+++.++..++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 457899988887777776543 45599999999999999999887 2 2344444443322 2345566777777665
No 414
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.93 E-value=0.28 Score=51.01 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK 216 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~ 216 (911)
..+++.|.|.+|+||||+|.++..... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 568999999999999999999766541 2234678888764
No 415
>PF13245 AAA_19: Part of AAA domain
Probab=93.93 E-value=0.14 Score=41.60 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=17.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
+.+++.|.|.+|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567888999999999555444333
No 416
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.92 E-value=0.085 Score=56.72 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=38.0
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+||.+..+..++-.+.+....-|.|.|..|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 479999999888777777666778899999999999999987654
No 417
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.90 E-value=0.055 Score=51.78 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 418
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=2.1 Score=45.27 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=89.6
Q ss_pred HHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcc-------cCCCCCceEEEEEe-CCccCHHHHHHHHHHHcCC
Q 042327 163 LQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFL-------EGPNTFDCVIWVVV-SKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 163 ~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~-------~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 233 (911)
++.+.+.+..++ .++..++|..|.||+++|+.+.+... ....+-+...++.. ......+++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344455555544 45666999999999999999877641 01112222333322 1112222222 22222221
Q ss_pred CCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCc-hhHhh-hccccceEE
Q 042327 234 FDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRS-EEVCG-FMEAHRKFK 309 (911)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~-~~v~~-~~~~~~~~~ 309 (911)
.. .-.+++=++|+||+.... ....+...+. .....+.+|++|.+ ..+.. ..+....++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 10 001466788899985432 2333433443 23345666655543 34432 234567899
Q ss_pred eccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 310 MVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 310 l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
+.++++++..+.+... +. + ++.+..++...+|.--|+..+
T Consensus 146 f~~l~~~~l~~~l~~~-~~-----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-NK-----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred CCCCCHHHHHHHHHHc-CC-----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 9999999998877654 11 1 134556666677633455443
No 419
>PRK05973 replicative DNA helicase; Provisional
Probab=93.84 E-value=0.32 Score=49.28 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVI 227 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 227 (911)
...++.|.|.+|+|||++|..+..... + .-..+++++...+ ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--K-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--h-cCCeEEEEEEeCC--HHHHHHHH
Confidence 457899999999999999999876651 2 2345677765554 44444443
No 420
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.84 E-value=0.3 Score=54.41 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHhhcccC-----CCCCceEEEEEeCCccC-HHHHHHHHHHHcC-CCCC-----cccc
Q 042327 174 PAVIIGIYGMGGVGKTTLL-THINNKFLEG-----PNTFDCVIWVVVSKDLR-VEYIQEVIAKQMG-FFDD-----SWRA 240 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~-~~~~-----~~~~ 240 (911)
+-..++|.|..|+|||||| ..+.+.. .+ .+.-+.++++-+.+... +.+ +.+.+++-+ +... ..+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCC
Confidence 4567899999999999997 5566653 11 13446788888877654 344 333444433 1110 0011
Q ss_pred cCHHH-----HHHHHHHHc--cCCcEEEEEcccc
Q 042327 241 KSVEE-----KALEIFNSL--SEKKFVLLLDDVW 267 (911)
Q Consensus 241 ~~~~~-----~~~~l~~~l--~~k~~LlVlDdv~ 267 (911)
....+ ..-.+.+++ +++.+|+|+||+-
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 11111 111233333 5899999999993
No 421
>PRK15453 phosphoribulokinase; Provisional
Probab=93.83 E-value=0.37 Score=49.66 Aligned_cols=80 Identities=19% Similarity=0.102 Sum_probs=44.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC--ccCHHHHHHHHH--HHcCCCCCc--ccccCHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK--DLRVEYIQEVIA--KQMGFFDDS--WRAKSVEEKA 247 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~--~~l~~~~~~--~~~~~~~~~~ 247 (911)
+..+|+|.|.+|+||||+|+.+.+.. .... ...+.++... .++..+.-..+. +.-+..-+. .+..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if-~~~~--~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF-RREN--INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hhcC--CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45799999999999999999998766 1111 1233333322 223333333222 122222222 3556677777
Q ss_pred HHHHHHccC
Q 042327 248 LEIFNSLSE 256 (911)
Q Consensus 248 ~~l~~~l~~ 256 (911)
+.++...++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777766543
No 422
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.83 E-value=0.043 Score=51.57 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 423
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.82 E-value=0.051 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 424
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.82 E-value=0.23 Score=50.75 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC--ccCHHHHHHHHHHH--cCCCCCc--ccccCHHHHHHHH
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK--DLRVEYIQEVIAKQ--MGFFDDS--WRAKSVEEKALEI 250 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~--l~~~~~~--~~~~~~~~~~~~l 250 (911)
+|+|.|..|+||||+|+.+.+.. ...+ ..++.++... .++....-..+... .+..-+. .+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999988876 2111 1233343222 12222222222222 1222222 3556677777777
Q ss_pred HHHccCCc
Q 042327 251 FNSLSEKK 258 (911)
Q Consensus 251 ~~~l~~k~ 258 (911)
+...+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77666543
No 425
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.44 Score=54.51 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=36.0
Q ss_pred CcccchhhHHHHH---HHHHcCC---------CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKV---WRCIVED---------PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l---~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++.|.++.++++ ++.|.+. -.+-|..+|++|.|||.||+++..+.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 4578988776665 5556543 24678899999999999999999987
No 426
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.79 E-value=0.28 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 042327 178 IGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.+.|+.|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999876
No 427
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.75 E-value=0.085 Score=56.69 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=40.1
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.+||-++.+..++..+.+....-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3489999999988888888778888899999999999999997765
No 428
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.74 E-value=2.7 Score=45.77 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc--cCHHHHHHHHHHHcCCCC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD--LRVEYIQEVIAKQMGFFD 235 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~ 235 (911)
...||-.+|.-|.||||-|-++++.+. . ....+-+...+. +..-+-++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---H-cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 457999999999999999999998882 2 222222222333 334455777888876543
No 429
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.73 E-value=0.045 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINN 197 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~ 197 (911)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999999874
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.72 E-value=0.19 Score=56.15 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
.+++.++|++|+||||++..++... .....-..+..|+....- ...+-++...+.++.+.. ...+..++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3699999999999999999887766 101223456666643311 112233344444554321 22334444444443
Q ss_pred ccCCcEEEEEccc
Q 042327 254 LSEKKFVLLLDDV 266 (911)
Q Consensus 254 l~~k~~LlVlDdv 266 (911)
+. ..=+|++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 33 3457888876
No 431
>PRK13949 shikimate kinase; Provisional
Probab=93.69 E-value=0.052 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.|+|+.|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 432
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.69 E-value=0.059 Score=52.46 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 433
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.67 E-value=0.11 Score=59.89 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=37.8
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.+..++.+...+......-|.|+|..|+||||+|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999998887766555667899999999999999998753
No 434
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.66 E-value=0.12 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.|.|+|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999987
No 435
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.66 E-value=0.048 Score=29.85 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=5.4
Q ss_pred CCCEEeecCCCCccc
Q 042327 583 SLQQLDLSYSSIKEL 597 (911)
Q Consensus 583 ~L~~L~L~~~~i~~l 597 (911)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 436
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.64 E-value=0.069 Score=53.35 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=38.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEE-------EeCCccCHHHH--HHHHHHHcCCCC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWV-------VVSKDLRVEYI--QEVIAKQMGFFD 235 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv-------~vs~~~~~~~~--~~~i~~~l~~~~ 235 (911)
+...|.++||+|+||||..+.++.+... +..-..++=. ....+.|+++. +++..++-++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~-~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHA-KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhh-ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 4568889999999999999999988722 2222222221 12223344443 667788876654
No 437
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.63 E-value=0.058 Score=49.96 Aligned_cols=23 Identities=43% Similarity=0.730 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 438
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.62 E-value=0.067 Score=52.11 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.|+|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999887
No 439
>PRK13947 shikimate kinase; Provisional
Probab=93.61 E-value=0.058 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 440
>PRK06851 hypothetical protein; Provisional
Probab=93.60 E-value=0.51 Score=51.10 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=40.1
Q ss_pred ccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc
Q 042327 156 VVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD 217 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~ 217 (911)
-.|.-...+.++ ++-.+++.|.|.+|+|||||++.++... . +..++..++-|.+.+
T Consensus 199 p~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a-~-~~G~~v~~~hC~~dP 254 (367)
T PRK06851 199 PKGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA-E-ERGFDVEVYHCGFDP 254 (367)
T ss_pred CCcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH-H-hCCCeEEEEeCCCCC
Confidence 345555555544 4446889999999999999999999987 2 455666666665544
No 441
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.59 E-value=0.22 Score=55.15 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHHHHHcCCCCC----cccccCH-HH--
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVIAKQMGFFDD----SWRAKSV-EE-- 245 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~-~~-- 245 (911)
+-..++|.|..|+|||||+..+.... . .++-+.++++-+.+. ..+.++++++...-..... .....+. ..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~-~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNI-A-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHH-H-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45679999999999999999988775 1 222346777777654 3456777777543221110 0011111 11
Q ss_pred ---HHHHHHHHc---cCCcEEEEEccc
Q 042327 246 ---KALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 246 ---~~~~l~~~l---~~k~~LlVlDdv 266 (911)
.+-.+.+++ +++.+|+++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecch
Confidence 223455666 468999999999
No 442
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.58 E-value=0.21 Score=59.10 Aligned_cols=86 Identities=21% Similarity=0.186 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
..+++-|.|..|+||||||..++... ...-..++|+.....++. ..++++++..+.. ...+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46899999999999999998866654 122356799988877774 3677777654321 233445555555
Q ss_pred HHHcc-CCcEEEEEcccc
Q 042327 251 FNSLS-EKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (911)
.+.++ ++.-|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456789999984
No 443
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.12 Score=52.96 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....++|||++|.|||-+|+.|+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 34789999999999999999999987
No 444
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.54 E-value=0.17 Score=56.15 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=57.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCCc----ccccCHH----
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDDS----WRAKSVE---- 244 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 244 (911)
+-..++|.|.+|+|||+|+..+.... . +.+-+.++++-+.+.. ...++.+++...-.+...- ....+..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 45678999999999999999988775 2 2334788888876654 4566666665542211100 0111111
Q ss_pred --HHHHHHHHHc---cCCcEEEEEccc
Q 042327 245 --EKALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 245 --~~~~~l~~~l---~~k~~LlVlDdv 266 (911)
..+-.+.+++ +++.+|+++||+
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1223355555 468999999999
No 445
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.54 E-value=0.061 Score=48.37 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 042327 178 IGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998876
No 446
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.53 E-value=0.098 Score=50.25 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=32.0
Q ss_pred ccchhhHHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 156 VVGLESTLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++|....+.++++.+.. ....-|.|+|..|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47777788887776653 223456699999999999999999975
No 447
>PRK14530 adenylate kinase; Provisional
Probab=93.51 E-value=0.058 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.|.|+|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998886
No 448
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.50 E-value=0.25 Score=54.85 Aligned_cols=90 Identities=22% Similarity=0.269 Sum_probs=53.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc----ccccC-HH---
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS----WRAKS-VE--- 244 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~-~~--- 244 (911)
.+-..++|.|..|+|||||++.+.... .. -..+++..-.+...+.++.+.+...-++...- ....+ ..
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-QC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-CC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 356789999999999999999998765 11 12344444444455666666665443221100 01111 11
Q ss_pred --HHHHHHHHHc--cCCcEEEEEccc
Q 042327 245 --EKALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 245 --~~~~~l~~~l--~~k~~LlVlDdv 266 (911)
..+-.+.+++ +++.+|+++||+
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122344444 588999999999
No 449
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.49 E-value=0.093 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 55789999999999999999986543
No 450
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.46 E-value=0.18 Score=49.91 Aligned_cols=26 Identities=35% Similarity=0.615 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|.|..|.|||||++.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999988754
No 451
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.46 E-value=0.16 Score=55.77 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 162 TLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+.+++.+.......+.|.|.||+|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34556666666666789999999999999999999987
No 452
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.46 E-value=0.11 Score=47.08 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+-|.|.|.+|+||||+|..++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4568899999999999999999764
No 453
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.44 E-value=0.055 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 454
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.42 E-value=0.053 Score=29.69 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=9.9
Q ss_pred CCccEEeeCCCCCCCCCC
Q 042327 837 PQLKEMKVDGCFGLKKLP 854 (911)
Q Consensus 837 ~~L~~L~l~~C~~L~~lP 854 (911)
|+|+.|++++|. |+.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 567888888876 77766
No 455
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.40 E-value=0.098 Score=56.10 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=36.5
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|.+..++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3579999998887755544445568899999999999999986654
No 456
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.40 E-value=0.081 Score=53.09 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=27.1
Q ss_pred HHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 169 CIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 169 ~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+...+.++|+++|..|+|||||..++....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4445689999999999999999999998875
No 457
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.39 E-value=0.081 Score=53.99 Aligned_cols=87 Identities=23% Similarity=0.248 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCC-CceEEEEEeCCccCHHHHHHHHHHHcCCCCCc-------------cc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNT-FDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS-------------WR 239 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------------~~ 239 (911)
..+++.|.|.+|+|||+++.++..... .. =..++||+...++ .++.+.+. .++..... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 568999999999999999988654431 12 3457888876543 44444432 33321100 00
Q ss_pred -----ccCHHHHHHHHHHHccC-CcEEEEEccc
Q 042327 240 -----AKSVEEKALEIFNSLSE-KKFVLLLDDV 266 (911)
Q Consensus 240 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv 266 (911)
..+.++....+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 24566666666666543 4467888887
No 458
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.38 E-value=0.16 Score=52.93 Aligned_cols=53 Identities=26% Similarity=0.303 Sum_probs=41.1
Q ss_pred CCcccchhhHHHH---HHHHHcCC--CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC
Q 042327 153 DPTVVGLESTLQK---VWRCIVED--PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF 206 (911)
Q Consensus 153 ~~~~vGr~~~~~~---l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F 206 (911)
.+.+||..+..+. +++++.++ .-+.|.|+|++|.|||+||-.+.... ...-+|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 4568998766554 56677664 46899999999999999999999998 434456
No 459
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.36 E-value=0.062 Score=50.29 Aligned_cols=20 Identities=45% Similarity=0.670 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 042327 177 IIGIYGMGGVGKTTLLTHIN 196 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~ 196 (911)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 460
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.35 E-value=0.063 Score=52.58 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999865
No 461
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.34 E-value=0.29 Score=54.10 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=55.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCC--CCCc---------eEEEEEeCCccCHHHHHHHHHHHcC-CCCC-----
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGP--NTFD---------CVIWVVVSKDLRVEYIQEVIAKQMG-FFDD----- 236 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~----- 236 (911)
+-..++|.|..|+|||||+..+.+.. ... ...| .++++-+.+.....+.+...+..-+ +...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 45678999999999999999988775 210 0022 5677777777555555555555544 2110
Q ss_pred cccccCHHH-----HHHHHHHHcc---CCcEEEEEccc
Q 042327 237 SWRAKSVEE-----KALEIFNSLS---EKKFVLLLDDV 266 (911)
Q Consensus 237 ~~~~~~~~~-----~~~~l~~~l~---~k~~LlVlDdv 266 (911)
..+...... .+-.+.++++ ++.+|+++||+
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 001111111 1223455554 68999999999
No 462
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.29 E-value=0.26 Score=54.46 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=53.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----cccccCHHH---
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDD----SWRAKSVEE--- 245 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~--- 245 (911)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+.+.. .+.++....+..-++... .....+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999999875 12566777666643 445555443333221110 001111111
Q ss_pred ---HHHHHHHHc--cCCcEEEEEccc
Q 042327 246 ---KALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 246 ---~~~~l~~~l--~~k~~LlVlDdv 266 (911)
.+-.+.+++ +++++|+++||+
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 112234444 689999999999
No 463
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.27 E-value=0.11 Score=54.87 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=41.1
Q ss_pred CcccchhhHHHHHHHHHcC------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.++.++++++.+.. .+-+++.++|+.|.||||||+.+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998864 467899999999999999999998877
No 464
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.26 E-value=0.33 Score=54.80 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=52.5
Q ss_pred HHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---
Q 042327 164 QKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW--- 238 (911)
Q Consensus 164 ~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--- 238 (911)
..+-+.|.. ..-.++.|.|.+|+|||||+..+...... .-..++||+..+. ..++.. -++.++...+..
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~ 154 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVL 154 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEc
Confidence 344444433 25679999999999999999998776621 1235778876543 333222 233444322111
Q ss_pred cccCHHHHHHHHHHHccCCcEEEEEcccc
Q 042327 239 RAKSVEEKALEIFNSLSEKKFVLLLDDVW 267 (911)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 267 (911)
...+.+.+...+.+ .+.-++|+|.+.
T Consensus 155 ~e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 155 SETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred CCCCHHHHHHHHHh---cCCcEEEEecch
Confidence 12233333333322 245578888873
No 465
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.23 E-value=0.28 Score=54.21 Aligned_cols=90 Identities=23% Similarity=0.272 Sum_probs=51.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCC-----CcccccCHHH-
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFD-----DSWRAKSVEE- 245 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 245 (911)
..-..++|+|..|+|||||++.+.+.. +.+..+++.+.+ ...+.+...+....-.... ........+.
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 355789999999999999999888764 234455555544 3344455555432111000 0001111111
Q ss_pred ----HHHHHHHHc--cCCcEEEEEcccc
Q 042327 246 ----KALEIFNSL--SEKKFVLLLDDVW 267 (911)
Q Consensus 246 ----~~~~l~~~l--~~k~~LlVlDdv~ 267 (911)
.+-.+.+++ +++++|+++||+-
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 122244444 5889999999993
No 466
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.19 E-value=0.069 Score=50.68 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 042327 178 IGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 467
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.15 E-value=0.34 Score=53.57 Aligned_cols=90 Identities=24% Similarity=0.224 Sum_probs=52.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc----ccccCH------
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS----WRAKSV------ 243 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~------ 243 (911)
.-..++|+|..|+|||||++.++... . ....++...-.+.....+..+..+..-++.... ....+.
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA-K---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-C---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 45688999999999999999998875 2 112333333333456666666555543321100 011111
Q ss_pred HHHHHHHHHHc--cCCcEEEEEcccc
Q 042327 244 EEKALEIFNSL--SEKKFVLLLDDVW 267 (911)
Q Consensus 244 ~~~~~~l~~~l--~~k~~LlVlDdv~ 267 (911)
...+..+.+++ ++++.||++||+-
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchH
Confidence 11122333444 5799999999994
No 468
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.12 E-value=0.003 Score=61.24 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEEe
Q 042327 532 PTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLN 611 (911)
Q Consensus 532 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~ 611 (911)
..+...++||++.|++..+... |+.++.|..|+++.|.+..+|..++.+..++.+++..|..+.+|.+.+.++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 4445556666666654444433 455566666666666666666666666666666666666666666666666666666
Q ss_pred ccccc
Q 042327 612 LEHAE 616 (911)
Q Consensus 612 l~~~~ 616 (911)
+.++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 66653
No 469
>PRK13975 thymidylate kinase; Provisional
Probab=93.12 E-value=0.078 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999998
No 470
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.11 E-value=0.083 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|.|+|+.|+||||+++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999999876
No 471
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.11 E-value=0.13 Score=54.52 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHH
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQE 225 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 225 (911)
.+++.+.|.||+||||+|.+..-... .....++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhc
Confidence 47899999999999999998655541 1224466666655555554443
No 472
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.07 E-value=0.34 Score=54.43 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCC
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFF 234 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 234 (911)
..|++++|+.|+||||.+.+++... ..+..-..+..|+... .....+-++...+.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 4799999999999999999998776 2121122345554322 122334455556665543
No 473
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.07 E-value=0.076 Score=51.62 Aligned_cols=36 Identities=33% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEE
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVV 213 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 213 (911)
.-.|++|+|+.|+|||||.+.+..=. . .=...+||.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE-~---~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE-E---PDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc-C---CCCceEEEC
Confidence 45799999999999999999876643 2 223456664
No 474
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.05 E-value=0.3 Score=54.15 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=50.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHHHHHcCCCCC-----cccccCHHH--
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVIAKQMGFFDD-----SWRAKSVEE-- 245 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 245 (911)
.-..++|+|..|+|||||++.+.... ..+.++...+... .+..++...+...-.+... ..+......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45689999999999999999887754 1234444434332 3455555555544322110 001111111
Q ss_pred ---HHHHHHHHc--cCCcEEEEEccc
Q 042327 246 ---KALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 246 ---~~~~l~~~l--~~k~~LlVlDdv 266 (911)
.+-.+.+++ +++.+|+++||+
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecch
Confidence 112234444 689999999999
No 475
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.04 E-value=0.18 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 476
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.03 E-value=0.11 Score=56.67 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=60.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHH---HHHHcCCCCCcccccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEV---IAKQMGFFDDSWRAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~---i~~~l~~~~~~~~~~~~~~~~~~l 250 (911)
....|.|.|+.|+||||+++.+.+.. .......++. +.++... .... +..+-.. ..........+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~ev------g~~~~~~~~~l 188 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNKRSLINQREV------GLDTLSFANAL 188 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCccceEEcccc------CCCCcCHHHHH
Confidence 45789999999999999999988765 2233344443 2222111 0000 0000000 11122345567
Q ss_pred HHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchh
Q 042327 251 FNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEE 297 (911)
Q Consensus 251 ~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~ 297 (911)
+..+...+=.|++|++.+.+.+...... ...|..|+.|+-..+
T Consensus 189 ~~~lr~~pd~i~vgEird~~~~~~~l~a----a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 189 RAALREDPDVILIGEMRDLETVELALTA----AETGHLVFGTLHTNS 231 (343)
T ss_pred HHhhccCCCEEEEeCCCCHHHHHHHHHH----HHcCCcEEEEEcCCC
Confidence 7778888999999999766555432221 223555666655443
No 477
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.00 E-value=0.044 Score=65.86 Aligned_cols=187 Identities=18% Similarity=0.208 Sum_probs=84.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc-ccCCCCCceEEEEEeCCccC---HHHH------HHHHHHHcCCCCCcccccCH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF-LEGPNTFDCVIWVVVSKDLR---VEYI------QEVIAKQMGFFDDSWRAKSV 243 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~~F~~~~wv~vs~~~~---~~~~------~~~i~~~l~~~~~~~~~~~~ 243 (911)
+..++.|+|+.|.||||+.+.+.-.. ....+ ++|++..... ...+ -..+.+.+..- ....
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-----~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStf-----S~~m 390 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-----IPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTF-----SGHM 390 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC-----CCccCCccccccchhheeeecChHhHHhhhhhHH-----HHHH
Confidence 44799999999999999999986551 00011 1111111000 0000 01111111100 0111
Q ss_pred HHHHHHHHHHccCCcEEEEEcccccccc---cccccc-cCCCCCCCCcEEEEEcCchhHhhhccccceEEeccCCHH-HH
Q 042327 244 EEKALEIFNSLSEKKFVLLLDDVWERVD---LTKVGV-PLPRPKNMASKVVFTTRSEEVCGFMEAHRKFKMVCLSDN-DS 318 (911)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~-~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~ 318 (911)
..+. .+...+ ..+-|+++|+.-...+ -..+.. .+......|+.+|+||....+.........+.-..+..+ +.
T Consensus 391 ~~~~-~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~ 468 (771)
T TIGR01069 391 KNIS-AILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEET 468 (771)
T ss_pred HHHH-HHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCC
Confidence 1122 222222 4789999999854322 111211 111012357899999999887543322211111111111 10
Q ss_pred HHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHHHHHHHHHhh
Q 042327 319 WDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYAIQLLSS 380 (911)
Q Consensus 319 ~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~ 380 (911)
.. |..+..... +. ...|-.|++++ |+|-.|.--|..+.. ....+.+.++..|..
T Consensus 469 l~-p~Ykl~~G~---~g--~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 469 LS-PTYKLLKGI---PG--ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred Cc-eEEEECCCC---CC--CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 00 000110111 01 23567787776 688877777766654 334455555555543
No 478
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=2.8 Score=48.21 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=88.9
Q ss_pred cccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 155 TVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++-|..+.++-+.+.+.- ....-|.++|++|.|||.||-++.... . .-+|+|.++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~-------~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-N-------LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-C-------eeEEEecCH----
Confidence 345666666555555542 134578899999999999999988875 1 235666554
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc-------------ccccccccCCC-CCCCCc
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV-------------DLTKVGVPLPR-PKNMAS 287 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~~~~-~~~~~s 287 (911)
+++.+.- ..+++.......+.-.-++++|.+|++++.. ...++.-.+.. .+-.|-
T Consensus 736 ----ElL~KyI-------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 ----ELLSKYI-------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred ----HHHHHHh-------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 2222211 1223333333333445699999999986421 01112111110 223455
Q ss_pred EEEEEcCchhHhh--hccc---cceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh
Q 042327 288 KVVFTTRSEEVCG--FMEA---HRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 288 ~iivTtR~~~v~~--~~~~---~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
-|+-+|...+... .++. ++.+.-..-++.|-.++|......-....+.++ +.++.+..|.-
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl----~~~a~~T~g~t 870 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDL----ECLAQKTDGFT 870 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccch----HHHhhhcCCCc
Confidence 5665554444321 1222 233333444566777777776543221222233 44556666654
No 479
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.99 E-value=0.23 Score=57.95 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHH
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 229 (911)
.++..|.|.+|.||||+++.+.....+....-...+.+.....--...+.+.+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 4688999999999999999887765221111124555555554445555555543
No 480
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.99 E-value=0.46 Score=54.43 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHHcCC--CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc----
Q 042327 164 QKVWRCIVED--PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS---- 237 (911)
Q Consensus 164 ~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---- 237 (911)
..+-+.|..+ .-+++.|.|.+|+|||||+.++..... ..-..+++++..+ +..++.+.+ +.++.....
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 3444445442 568999999999999999999887762 2334567766544 344454443 455543211
Q ss_pred ---------ccccCHHHHHHHHHHHccC-CcEEEEEccc
Q 042327 238 ---------WRAKSVEEKALEIFNSLSE-KKFVLLLDDV 266 (911)
Q Consensus 238 ---------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 266 (911)
......++....+.+.+.. +.-.+|+|.+
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0112234555555555533 3446777776
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.97 E-value=0.078 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 482
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.97 E-value=0.084 Score=48.90 Aligned_cols=47 Identities=28% Similarity=0.317 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCC
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFF 234 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 234 (911)
.++|.|+|.+|+||||+.+.+-... +..+ --+.-.+.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~~~-----------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--VKHK-----------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--hhce-----------eeeHhHHHHHHHHHhCCc
Confidence 4799999999999999998776654 1111 113445666666666654
No 483
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.97 E-value=0.12 Score=53.97 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=40.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+..+++.|+|.+|+|||+++.++.... ......++||+..+. ..++.+...+ ++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 467899999999999999999988876 344788999988764 3344444433 44
No 484
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.96 E-value=0.095 Score=51.76 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|.|.|.+|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999885
No 485
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.95 E-value=0.087 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|+|+.|+||||||+.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999876
No 486
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.94 E-value=0.33 Score=46.76 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=44.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccc-cCHHHHHHHHHHHcc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRA-KSVEEKALEIFNSLS 255 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~~l~ 255 (911)
++.|.|.+|+||||+|..+.... . . .++++.-...++ .+..+.|..........|.. .....+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 68999999999999999998775 1 1 133444333333 34445554433322222211 112234444444333
Q ss_pred CCcEEEEEccc
Q 042327 256 EKKFVLLLDDV 266 (911)
Q Consensus 256 ~k~~LlVlDdv 266 (911)
+. -++++|.+
T Consensus 76 ~~-~~VlID~L 85 (170)
T PRK05800 76 PG-RCVLVDCL 85 (170)
T ss_pred CC-CEEEehhH
Confidence 33 37888987
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.94 E-value=0.091 Score=45.65 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHIN 196 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~ 196 (911)
.-..++|+|+.|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999976
No 488
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.94 E-value=0.37 Score=57.02 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=50.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC--HHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR--VEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
..||+++|+.|+||||.+.+++..+ ........+..++.. .+. ..+-++...+.++++.. ...+..++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~- 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA- 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-
Confidence 4799999999999999999888766 111112345555433 232 44556666666665432 2234455444443
Q ss_pred HccCCcEEEEEccc
Q 042327 253 SLSEKKFVLLLDDV 266 (911)
Q Consensus 253 ~l~~k~~LlVlDdv 266 (911)
.++++. +|++|=.
T Consensus 260 ~~~~~D-~VLIDTA 272 (767)
T PRK14723 260 ALGDKH-LVLIDTV 272 (767)
T ss_pred HhcCCC-EEEEeCC
Confidence 344443 6666765
No 489
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.92 E-value=0.5 Score=50.54 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+..+|+++|+.|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998887
No 490
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.92 E-value=0.34 Score=53.67 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=48.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCC--------Cc--cccc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFD--------DS--WRAK 241 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~--------~~--~~~~ 241 (911)
.+-..++|+|..|+|||||++.+.... . .+..+...+.. ..+..++....+..-+... +. ....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~-~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT-Q----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc-C----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 356789999999999999999888764 1 22322222322 2233344434333322211 00 0011
Q ss_pred CHHHHHHHHHHHc--cCCcEEEEEcccc
Q 042327 242 SVEEKALEIFNSL--SEKKFVLLLDDVW 267 (911)
Q Consensus 242 ~~~~~~~~l~~~l--~~k~~LlVlDdv~ 267 (911)
...+....+.+++ +++.+|+++||+-
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dslt 255 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLT 255 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchh
Confidence 1122223334443 5799999999993
No 491
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.87 E-value=0.22 Score=54.03 Aligned_cols=62 Identities=21% Similarity=0.221 Sum_probs=45.8
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHH
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQ 224 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 224 (911)
.++|.+..+..+...+..+ +-+.+.|.+|+|||+||+.+.... .. ..++|.+.......++.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHhc
Confidence 3789888888877666654 457899999999999999999987 22 33566666666655543
No 492
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.87 E-value=0.45 Score=46.65 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=65.2
Q ss_pred HHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCce--EEEEEeCCc---cCHHHHHHHHHHHcCCCCCcccc
Q 042327 166 VWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDC--VIWVVVSKD---LRVEYIQEVIAKQMGFFDDSWRA 240 (911)
Q Consensus 166 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~--~~wv~vs~~---~~~~~~~~~i~~~l~~~~~~~~~ 240 (911)
++..+-+.+..-..|.|++|+|||||.+.++.-.......|-. +.-|+-+.. ...---+..+...+..... .
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~---c 204 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDP---C 204 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhccc---c
Confidence 5666655666667899999999999999998877443445643 222221110 0000011222222222111 1
Q ss_pred cCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhH
Q 042327 241 KSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEV 298 (911)
Q Consensus 241 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v 298 (911)
...+.+...++. --+=++|+|++-...+-..+..++ ..|-++|.|..--.+
T Consensus 205 pk~~gmmmaIrs---m~PEViIvDEIGt~~d~~A~~ta~----~~GVkli~TaHG~~i 255 (308)
T COG3854 205 PKAEGMMMAIRS---MSPEVIIVDEIGTEEDALAILTAL----HAGVKLITTAHGNGI 255 (308)
T ss_pred hHHHHHHHHHHh---cCCcEEEEeccccHHHHHHHHHHH----hcCcEEEEeeccccH
Confidence 111222233332 245689999997666555444333 357888877764443
No 493
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.87 E-value=0.082 Score=50.73 Aligned_cols=22 Identities=50% Similarity=0.628 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 042327 178 IGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|.|.|..|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998887
No 494
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.86 E-value=1.7 Score=48.31 Aligned_cols=247 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccchhHHHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 042327 8 TVSCDAIFSRCLDCTVTRAAYISELQANIDALRTERQRLIEARNDVLRKVAAAEQQRMRRLNKVQGWLSRVEAVEADADK 87 (911)
Q Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~v~~Wl~~v~~~~~~~ed 87 (911)
+..+..+...+..+=.+...+..|-.++....+.|++. .+++.|.++=++++. ..|
T Consensus 279 QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~-----------------------~q~K~~~kqqk~i~~-~K~ 334 (614)
T KOG0927|consen 279 QDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELEE-----------------------NQMKAYEKQQKQIAH-MKD 334 (614)
T ss_pred hhhhhhHhhhhheecccceeeecCCHHHHhhHHHHHhH-----------------------HHHHHHHHHHhHHHH-hhH
Q ss_pred HHHhChhhhhccccCCCCCCCcccccchhHHHHHHHHHHHHHhcCCCcceehhc------------ccccccccCCCCCc
Q 042327 88 LIRDSPQEIEKLCLGGYCSKNFKSSYNFGKQVAKTLSDVATSLGEGAFEVVAER------------VLASVAVEKPTDPT 155 (911)
Q Consensus 88 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 155 (911)
++-.+....... +++...+.+.+..+..++-......+ .|+|.+.- .+.
T Consensus 335 ~ia~~g~g~a~~----------------~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~---~nv 395 (614)
T KOG0927|consen 335 LIARFGHGSAKL----------------GRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMV---QNV 395 (614)
T ss_pred HHHhhcccchhh----------------hHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEE---ecc
Q ss_pred ccchhhHHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeC------------------
Q 042327 156 VVGLESTLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVS------------------ 215 (911)
Q Consensus 156 ~vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs------------------ 215 (911)
-+|.+..- .+...|.- +.-..|++||+.|+|||||.+.++-+.....+.-.........
T Consensus 396 ~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le 474 (614)
T KOG0927|consen 396 SFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLE 474 (614)
T ss_pred ccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHH
Q ss_pred ------CccCHHHHHHHHHHHcCCCCCcc-----cccCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCC
Q 042327 216 ------KDLRVEYIQEVIAKQMGFFDDSW-----RAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKN 284 (911)
Q Consensus 216 ------~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~ 284 (911)
......+..+.|+...++..+.. .-.+-+...-......-..+-+||||.--+-.|...+-..-..-+.
T Consensus 475 ~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 475 FMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred HHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc
Q ss_pred CCcEEEEEcCchhH
Q 042327 285 MASKVVFTTRSEEV 298 (911)
Q Consensus 285 ~~s~iivTtR~~~v 298 (911)
-.+-||++|.+..+
T Consensus 555 ~~Ggvv~vSHDfrl 568 (614)
T KOG0927|consen 555 FPGGVVLVSHDFRL 568 (614)
T ss_pred cCCceeeeechhhH
No 495
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.86 E-value=0.07 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 042327 178 IGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 178 i~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|.|+|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999886
No 496
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.78 E-value=0.11 Score=51.83 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+..+|.|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 497
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.77 E-value=0.33 Score=54.24 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCc--eEEEEEeCCc-cCHHHHHHHHHHHcCCCCCc----cccc-CHH-
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFD--CVIWVVVSKD-LRVEYIQEVIAKQMGFFDDS----WRAK-SVE- 244 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~----~~~~-~~~- 244 (911)
.-..++|.|..|+|||||+..+.+.. ...+.+. .++++-+.+. ..+.++.+.+...-.+...- .... ...
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 44678999999999999999988875 2221121 4566666554 34566666665443221100 0111 111
Q ss_pred ----HHHHHHHHHcc---CCcEEEEEccc
Q 042327 245 ----EKALEIFNSLS---EKKFVLLLDDV 266 (911)
Q Consensus 245 ----~~~~~l~~~l~---~k~~LlVlDdv 266 (911)
..+-.+.++++ ++++||++||+
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 11223555554 78899999999
No 498
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.75 E-value=0.076 Score=52.25 Aligned_cols=36 Identities=33% Similarity=0.218 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 163 LQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 163 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+.++.... ....+.|+|..|+||||+++.+....
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3344443333 34689999999999999999988765
No 499
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.74 E-value=0.16 Score=47.93 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=29.7
Q ss_pred hHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 161 STLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 161 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++++.+.+.+ +++.++|..|+|||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 346677777754 789999999999999999998875
No 500
>PRK13948 shikimate kinase; Provisional
Probab=92.72 E-value=0.1 Score=50.69 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999886
Done!