Query 042327
Match_columns 911
No_of_seqs 654 out of 4733
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.2E-47 7.4E-52 442.9 20.5 312 155-489 129-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 9.5E-39 3.3E-43 371.3 15.8 286 154-482 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 7.9E-36 2.7E-40 384.8 25.5 310 153-488 123-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.8E-33 6E-38 331.9 23.5 305 153-486 123-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 2.9E-25 1E-29 243.6 18.3 304 507-870 38-341 (347)
6 4fmz_A Internalin; leucine ric 99.9 2.5E-24 8.6E-29 236.2 21.9 298 494-848 47-344 (347)
7 3v47_A TOLL-like receptor 5B a 99.9 1.2E-23 4E-28 240.1 25.4 354 495-876 14-409 (455)
8 2id5_A Lingo-1, leucine rich r 99.9 1.8E-23 6.2E-28 239.9 25.8 306 496-870 16-328 (477)
9 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-23 5.1E-28 248.5 24.2 146 495-642 15-165 (606)
10 1o6v_A Internalin A; bacterial 99.9 2E-23 7E-28 238.3 24.2 334 496-876 51-389 (466)
11 2z63_A TOLL-like receptor 4, v 99.9 4.7E-23 1.6E-27 242.5 25.2 143 496-641 12-160 (570)
12 3o6n_A APL1; leucine-rich repe 99.9 2.1E-23 7.3E-28 232.5 19.9 306 510-876 42-353 (390)
13 3o6n_A APL1; leucine-rich repe 99.9 2.9E-23 9.8E-28 231.5 20.2 296 494-848 48-350 (390)
14 2z81_A CD282 antigen, TOLL-lik 99.9 5.1E-23 1.7E-27 240.9 22.1 191 496-704 10-205 (549)
15 2z7x_B TOLL-like receptor 1, v 99.9 9.3E-23 3.2E-27 236.8 23.9 142 494-642 3-150 (520)
16 1o6v_A Internalin A; bacterial 99.9 8.2E-23 2.8E-27 233.3 23.0 300 510-872 43-363 (466)
17 4ecn_A Leucine-rich repeat pro 99.9 2.6E-23 8.8E-28 250.1 19.2 330 508-878 443-843 (876)
18 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-23 8.3E-28 246.7 18.3 363 496-876 37-559 (606)
19 4eco_A Uncharacterized protein 99.9 9E-24 3.1E-28 250.2 14.5 347 509-879 202-604 (636)
20 3t6q_A CD180 antigen; protein- 99.9 2.1E-22 7E-27 238.7 25.3 132 509-641 53-190 (606)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.1E-22 1.7E-26 232.6 27.7 363 493-876 33-511 (562)
22 3oja_B Anopheles plasmodium-re 99.9 5E-23 1.7E-27 242.4 18.9 303 511-874 49-357 (597)
23 3bz5_A Internalin-J, INLJ; leu 99.9 6E-23 2.1E-27 232.3 17.7 121 509-640 38-158 (457)
24 3rgz_A Protein brassinosteroid 99.9 3.3E-23 1.1E-27 251.2 16.4 333 496-869 183-545 (768)
25 3t6q_A CD180 antigen; protein- 99.9 1.3E-22 4.5E-27 240.3 21.1 338 509-876 125-561 (606)
26 3oja_B Anopheles plasmodium-re 99.9 1.5E-22 5.2E-27 238.3 19.4 296 494-848 54-356 (597)
27 3bz5_A Internalin-J, INLJ; leu 99.9 4.8E-22 1.6E-26 225.0 22.0 310 494-853 45-354 (457)
28 2z81_A CD282 antigen, TOLL-lik 99.9 7.4E-22 2.5E-26 231.0 24.3 145 496-641 31-183 (549)
29 3v47_A TOLL-like receptor 5B a 99.9 4.5E-22 1.5E-26 227.0 20.3 334 495-854 34-412 (455)
30 2ft3_A Biglycan; proteoglycan, 99.9 3.9E-22 1.3E-26 217.0 18.4 295 513-848 33-331 (332)
31 4ecn_A Leucine-rich repeat pro 99.9 1.8E-22 6.1E-27 242.8 16.2 316 511-853 489-842 (876)
32 1xku_A Decorin; proteoglycan, 99.9 1.2E-21 4.3E-26 212.9 20.8 295 513-847 31-329 (330)
33 2id5_A Lingo-1, leucine rich r 99.9 1.4E-21 4.8E-26 224.2 22.2 286 496-824 37-331 (477)
34 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-21 5.7E-26 234.1 23.9 147 495-643 8-158 (680)
35 3j0a_A TOLL-like receptor 5; m 99.9 1.9E-21 6.5E-26 238.3 24.3 149 493-643 6-161 (844)
36 1ziw_A TOLL-like receptor 3; i 99.9 2.9E-21 9.8E-26 232.1 25.3 131 509-640 45-181 (680)
37 3rgz_A Protein brassinosteroid 99.9 5.4E-22 1.8E-26 240.6 18.4 330 509-872 174-524 (768)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.7E-21 2.3E-25 223.1 26.8 127 512-642 30-158 (562)
39 2z63_A TOLL-like receptor 4, v 99.9 8.4E-22 2.9E-26 231.8 18.4 355 496-876 33-532 (570)
40 4eco_A Uncharacterized protein 99.9 1.4E-21 4.7E-26 231.4 18.8 317 511-854 247-603 (636)
41 2z7x_B TOLL-like receptor 1, v 99.9 5.2E-21 1.8E-25 222.1 22.9 143 516-681 3-150 (520)
42 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-20 5.6E-25 223.9 23.4 143 497-642 37-185 (635)
43 4fcg_A Uncharacterized protein 99.9 6.8E-21 2.3E-25 206.1 17.7 238 534-879 80-318 (328)
44 3j0a_A TOLL-like receptor 5; m 99.8 1.6E-20 5.5E-25 230.1 21.8 170 516-706 7-185 (844)
45 2z80_A TOLL-like receptor 2, v 99.8 4.5E-20 1.5E-24 202.5 19.1 270 517-849 35-313 (353)
46 1ogq_A PGIP-2, polygalacturona 99.8 4.6E-21 1.6E-25 206.2 10.8 126 514-640 51-184 (313)
47 2z80_A TOLL-like receptor 2, v 99.8 2.5E-20 8.7E-25 204.5 16.6 195 493-705 33-232 (353)
48 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-20 9E-25 200.3 12.6 253 535-855 50-309 (313)
49 4fcg_A Uncharacterized protein 99.8 7.2E-20 2.5E-24 198.0 15.6 218 513-786 81-310 (328)
50 4g8a_A TOLL-like receptor 4; l 99.8 1E-19 3.5E-24 217.0 17.5 357 495-876 56-581 (635)
51 3zyj_A Leucine-rich repeat-con 99.8 1.9E-19 6.3E-24 203.9 18.3 238 496-789 48-291 (440)
52 2z66_A Variable lymphocyte rec 99.8 2.3E-19 8E-24 192.6 17.6 124 516-641 10-137 (306)
53 3zyi_A Leucine-rich repeat-con 99.8 1.9E-19 6.4E-24 204.6 17.8 237 496-788 59-301 (452)
54 1xku_A Decorin; proteoglycan, 99.8 4E-19 1.4E-23 193.0 19.4 248 535-857 31-282 (330)
55 3g06_A SSPH2 (leucine-rich rep 99.8 5.4E-19 1.8E-23 205.8 21.0 254 515-848 42-295 (622)
56 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-19 4.4E-24 197.0 14.8 262 535-848 33-305 (332)
57 3zyi_A Leucine-rich repeat-con 99.8 6.3E-19 2.2E-23 200.2 20.7 241 515-848 56-301 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 1.1E-18 3.6E-23 197.6 21.2 240 516-848 46-290 (440)
59 1jl5_A Outer protein YOPM; leu 99.8 9.2E-19 3.2E-23 197.8 20.6 289 496-847 76-367 (454)
60 1jl5_A Outer protein YOPM; leu 99.8 1.6E-18 5.4E-23 195.9 20.1 282 496-854 116-412 (454)
61 2z66_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 186.9 15.7 240 496-789 12-260 (306)
62 1ozn_A Reticulon 4 receptor; N 99.8 9.2E-19 3.2E-23 185.8 13.9 219 516-789 14-237 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.8 8.2E-20 2.8E-24 197.0 5.1 261 515-852 12-277 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-17 3.7E-22 194.8 20.7 256 494-827 43-298 (622)
65 1ozn_A Reticulon 4 receptor; N 99.8 2.5E-18 8.5E-23 182.5 13.4 217 496-766 16-237 (285)
66 3oja_A Leucine-rich immune mol 99.7 1.3E-17 4.3E-22 190.5 15.2 238 532-846 31-271 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.7 6.6E-18 2.3E-22 182.0 12.2 239 536-850 11-250 (317)
68 1wwl_A Monocyte differentiatio 99.7 1.1E-18 3.6E-23 187.7 4.7 158 511-685 41-217 (312)
69 3oja_A Leucine-rich immune mol 99.7 2.1E-18 7.3E-23 196.9 7.4 238 511-825 32-274 (487)
70 1h6u_A Internalin H; cell adhe 99.7 4.3E-17 1.5E-21 174.6 16.8 124 510-640 38-161 (308)
71 1p9a_G Platelet glycoprotein I 99.7 1.2E-16 4.2E-21 169.2 17.2 130 510-642 7-136 (290)
72 2xwt_C Thyrotropin receptor; s 99.7 4.6E-17 1.6E-21 167.7 13.5 102 536-640 32-140 (239)
73 3ogk_B Coronatine-insensitive 99.7 1.5E-17 5.1E-22 196.4 9.1 322 511-867 162-543 (592)
74 2xwt_C Thyrotropin receptor; s 99.7 9.4E-17 3.2E-21 165.4 13.1 91 547-641 23-116 (239)
75 1z7x_W Ribonuclease inhibitor; 99.7 3.6E-18 1.2E-22 194.9 2.7 285 536-848 86-409 (461)
76 2o6q_A Variable lymphocyte rec 99.7 3.1E-16 1.1E-20 164.7 17.0 126 514-641 17-144 (270)
77 1h6u_A Internalin H; cell adhe 99.7 6E-17 2E-21 173.5 11.7 208 515-788 21-228 (308)
78 1wwl_A Monocyte differentiatio 99.7 6.2E-18 2.1E-22 181.7 3.8 245 531-847 39-306 (312)
79 3rfs_A Internalin B, repeat mo 99.7 1E-16 3.4E-21 168.6 12.8 131 508-641 36-168 (272)
80 2z62_A TOLL-like receptor 4, v 99.7 4.3E-16 1.5E-20 164.3 16.3 126 513-640 28-159 (276)
81 2z62_A TOLL-like receptor 4, v 99.7 4.3E-16 1.5E-20 164.3 15.8 219 519-766 13-236 (276)
82 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-17 3.8E-22 190.9 3.4 61 809-872 337-408 (461)
83 3ogk_B Coronatine-insensitive 99.7 5.9E-17 2E-21 191.2 9.3 318 514-869 139-523 (592)
84 2ast_B S-phase kinase-associat 99.7 1.4E-16 4.8E-21 173.5 11.2 224 537-823 49-282 (336)
85 2o6q_A Variable lymphocyte rec 99.7 1.3E-15 4.4E-20 159.9 17.6 146 495-642 20-169 (270)
86 4ay9_X Follicle-stimulating ho 99.6 1.8E-15 6.1E-20 165.3 17.1 238 538-846 12-255 (350)
87 4ay9_X Follicle-stimulating ho 99.6 1.7E-15 5.8E-20 165.5 16.3 238 516-822 12-255 (350)
88 3rfs_A Internalin B, repeat mo 99.6 1.1E-15 3.8E-20 160.6 14.3 170 495-680 45-216 (272)
89 1p9a_G Platelet glycoprotein I 99.6 1.8E-15 6.2E-20 160.2 15.4 200 531-789 6-207 (290)
90 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.5E-21 173.7 6.0 220 515-787 49-282 (336)
91 2p1m_B Transport inhibitor res 99.6 2.3E-16 7.9E-21 186.3 7.5 302 511-849 154-518 (594)
92 2p1m_B Transport inhibitor res 99.6 2.8E-16 9.6E-21 185.5 6.4 318 512-870 129-517 (594)
93 2ca6_A RAN GTPase-activating p 99.6 5.1E-16 1.8E-20 172.4 6.3 140 531-682 28-200 (386)
94 3m19_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 152.0 14.6 171 495-682 18-192 (251)
95 1h6t_A Internalin B; cell adhe 99.6 4.1E-15 1.4E-19 157.6 12.3 152 507-682 40-191 (291)
96 2qen_A Walker-type ATPase; unk 99.6 3.1E-14 1.1E-18 155.8 18.6 292 154-482 12-348 (350)
97 4ezg_A Putative uncharacterize 99.6 4.7E-15 1.6E-19 147.5 10.9 152 510-682 41-194 (197)
98 1m9s_A Internalin B; cell inva 99.6 2.8E-15 9.6E-20 174.3 10.4 119 515-640 23-141 (605)
99 2fna_A Conserved hypothetical 99.6 9E-14 3.1E-18 152.6 21.0 289 154-481 13-355 (357)
100 1w5s_A Origin recognition comp 99.6 3.3E-14 1.1E-18 159.4 17.7 296 154-467 22-371 (412)
101 3m19_A Variable lymphocyte rec 99.6 2.9E-14 9.9E-19 147.8 15.6 127 514-642 15-143 (251)
102 3goz_A Leucine-rich repeat-con 99.6 7.8E-15 2.7E-19 161.1 11.5 259 519-824 4-295 (362)
103 1h6t_A Internalin B; cell adhe 99.5 3.1E-14 1.1E-18 150.9 14.9 165 495-683 50-214 (291)
104 1m9s_A Internalin B; cell inva 99.5 1.1E-14 3.9E-19 169.2 12.0 171 507-705 37-207 (605)
105 3e6j_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 144.6 14.2 143 497-641 25-170 (229)
106 4glp_A Monocyte differentiatio 99.5 2.5E-15 8.6E-20 161.2 5.6 139 535-685 64-213 (310)
107 3qfl_A MLA10; coiled-coil, (CC 99.5 1.3E-14 4.6E-19 127.6 8.5 83 9-98 1-84 (115)
108 1xeu_A Internalin C; cellular 99.5 2.6E-14 8.9E-19 148.9 12.1 156 503-683 31-186 (263)
109 2v9t_B SLIT homolog 2 protein 99.5 9.1E-14 3.1E-18 140.6 13.6 127 513-640 32-162 (220)
110 2ca6_A RAN GTPase-activating p 99.5 1.2E-14 3.9E-19 161.4 7.1 239 509-790 28-316 (386)
111 3goz_A Leucine-rich repeat-con 99.5 1.1E-14 3.7E-19 160.0 6.3 258 539-848 2-295 (362)
112 4ezg_A Putative uncharacterize 99.5 8E-14 2.7E-18 138.5 11.8 145 494-642 47-193 (197)
113 2v9t_B SLIT homolog 2 protein 99.5 6.7E-14 2.3E-18 141.6 11.4 149 516-681 14-164 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.4E-18 139.5 12.9 126 514-640 33-163 (220)
115 2o6s_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 136.7 14.2 142 498-641 14-159 (208)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 1.4E-13 4.8E-18 139.2 11.7 150 516-682 14-166 (220)
117 4glp_A Monocyte differentiatio 99.5 5.2E-14 1.8E-18 151.0 8.1 198 513-765 91-305 (310)
118 1xeu_A Internalin C; cellular 99.5 3.4E-14 1.2E-18 148.0 6.0 168 510-731 16-183 (263)
119 2xot_A Amphoterin-induced prot 99.5 2E-13 6.7E-18 149.7 12.1 171 495-682 22-202 (361)
120 3e6j_A Variable lymphocyte rec 99.5 2.5E-13 8.5E-18 138.4 12.0 151 514-682 20-172 (229)
121 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-13 3.7E-18 134.8 8.1 128 510-640 16-150 (176)
122 3cvr_A Invasion plasmid antige 99.4 1E-12 3.5E-17 151.0 17.3 112 514-641 60-171 (571)
123 2je0_A Acidic leucine-rich nuc 99.4 2.1E-13 7E-18 128.8 9.0 124 512-638 16-148 (149)
124 2o6s_A Variable lymphocyte rec 99.4 7.4E-13 2.5E-17 132.8 12.6 148 516-680 10-159 (208)
125 2ell_A Acidic leucine-rich nuc 99.4 3.2E-13 1.1E-17 130.4 8.9 127 513-642 24-159 (168)
126 2xot_A Amphoterin-induced prot 99.4 4.3E-13 1.5E-17 147.0 10.1 156 515-684 20-178 (361)
127 1a9n_A U2A', U2A'; complex (nu 99.4 6.8E-13 2.3E-17 129.1 10.1 146 525-685 9-156 (176)
128 2ell_A Acidic leucine-rich nuc 99.3 7.9E-12 2.7E-16 120.5 13.3 129 494-623 27-164 (168)
129 1w8a_A SLIT protein; signaling 99.3 5.4E-12 1.8E-16 124.5 11.5 125 516-642 11-138 (192)
130 2wfh_A SLIT homolog 2 protein 99.3 8.4E-12 2.9E-16 123.1 12.9 124 516-642 13-138 (193)
131 2o6r_A Variable lymphocyte rec 99.3 8E-12 2.7E-16 121.6 12.2 126 515-642 9-136 (177)
132 2qby_B CDC6 homolog 3, cell di 99.3 6.1E-11 2.1E-15 131.3 20.5 289 154-467 20-339 (384)
133 1dce_A Protein (RAB geranylger 99.3 1.8E-12 6.1E-17 149.8 6.8 102 536-642 442-545 (567)
134 2v1u_A Cell division control p 99.3 5E-11 1.7E-15 132.2 17.5 291 154-467 19-351 (387)
135 3cvr_A Invasion plasmid antige 99.3 1.3E-11 4.5E-16 141.7 12.8 129 496-642 64-192 (571)
136 2je0_A Acidic leucine-rich nuc 99.3 2.3E-11 7.9E-16 114.6 11.7 120 495-614 21-149 (149)
137 1fnn_A CDC6P, cell division co 99.3 2.4E-10 8.2E-15 126.7 21.4 290 154-467 17-351 (389)
138 1dce_A Protein (RAB geranylger 99.3 1.2E-11 4.2E-16 142.9 11.3 121 514-637 442-567 (567)
139 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.1E-16 122.0 9.5 125 538-681 13-138 (193)
140 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.8E-16 148.0 8.8 108 531-641 220-327 (727)
141 2qby_A CDC6 homolog 1, cell di 99.2 5.1E-11 1.7E-15 132.1 13.0 293 153-466 19-347 (386)
142 1w8a_A SLIT protein; signaling 99.2 7.1E-11 2.4E-15 116.4 11.6 122 496-618 13-139 (192)
143 2o6r_A Variable lymphocyte rec 99.2 8.3E-11 2.8E-15 114.4 11.7 123 496-619 12-138 (177)
144 1ds9_A Outer arm dynein; leuci 99.2 9.8E-13 3.4E-17 130.7 -3.7 107 531-641 44-151 (198)
145 4b8c_D Glucose-repressible alc 99.1 1.7E-11 6E-16 146.2 5.3 152 513-683 173-330 (727)
146 1njg_A DNA polymerase III subu 99.1 6.2E-10 2.1E-14 114.6 14.8 195 154-361 23-230 (250)
147 2r9u_A Variable lymphocyte rec 99.1 1.3E-10 4.6E-15 112.2 9.1 99 516-615 15-115 (174)
148 2r9u_A Variable lymphocyte rec 99.1 1.9E-10 6.7E-15 111.1 9.6 102 537-642 14-117 (174)
149 3g39_A Variable lymphocyte rec 99.1 2E-10 6.7E-15 110.7 9.4 99 538-640 12-112 (170)
150 4fdw_A Leucine rich hypothetic 99.1 3E-09 1E-13 117.3 19.5 119 514-639 114-235 (401)
151 3sb4_A Hypothetical leucine ri 99.1 3.9E-10 1.3E-14 121.7 11.2 62 710-783 263-327 (329)
152 2chg_A Replication factor C sm 99.1 1.1E-09 3.9E-14 110.8 14.1 182 154-358 17-203 (226)
153 3g39_A Variable lymphocyte rec 99.1 4.2E-10 1.4E-14 108.3 10.2 102 514-616 10-113 (170)
154 3sb4_A Hypothetical leucine ri 99.1 6.8E-10 2.3E-14 119.8 12.8 285 512-844 24-328 (329)
155 1ds9_A Outer arm dynein; leuci 99.0 1.4E-11 4.7E-16 122.3 -1.3 129 537-684 25-155 (198)
156 4fdw_A Leucine rich hypothetic 98.9 3.1E-08 1E-12 109.2 19.2 264 533-876 111-384 (401)
157 1sxj_B Activator 1 37 kDa subu 98.8 7.5E-09 2.6E-13 111.3 11.2 183 154-359 21-210 (323)
158 2ifg_A High affinity nerve gro 98.8 9.2E-09 3.1E-13 111.9 9.4 98 518-615 13-113 (347)
159 1hqc_A RUVB; extended AAA-ATPa 98.8 8.4E-08 2.9E-12 103.1 16.4 272 154-466 12-324 (324)
160 2ifg_A High affinity nerve gro 98.7 2.7E-08 9.1E-13 108.2 10.7 101 538-642 11-115 (347)
161 1iqp_A RFCS; clamp loader, ext 98.7 5.2E-08 1.8E-12 104.9 10.6 181 154-360 25-213 (327)
162 3te6_A Regulatory protein SIR3 98.6 3.4E-07 1.2E-11 95.9 15.4 170 155-327 21-212 (318)
163 3un9_A NLR family member X1; l 98.6 6.3E-09 2.2E-13 113.5 1.2 160 513-684 72-254 (372)
164 4fs7_A Uncharacterized protein 98.6 1.1E-06 3.9E-11 96.9 18.4 304 509-871 67-375 (394)
165 2chq_A Replication factor C sm 98.5 4.6E-07 1.6E-11 97.0 11.9 179 154-358 17-203 (319)
166 3un9_A NLR family member X1; l 98.5 4.5E-08 1.5E-12 106.8 3.8 138 534-684 71-226 (372)
167 1jbk_A CLPB protein; beta barr 98.5 2.1E-07 7.3E-12 91.3 7.4 46 154-199 22-67 (195)
168 1jr3_A DNA polymerase III subu 98.4 1.4E-06 4.9E-11 95.5 14.3 194 154-359 16-221 (373)
169 3bos_A Putative DNA replicatio 98.3 3.9E-07 1.3E-11 93.1 6.1 173 154-359 28-217 (242)
170 4gt6_A Cell surface protein; l 98.3 7.1E-06 2.4E-10 90.5 15.8 78 752-846 286-366 (394)
171 2z4s_A Chromosomal replication 98.3 3.1E-06 1E-10 94.3 11.5 182 155-357 106-304 (440)
172 1sxj_A Activator 1 95 kDa subu 98.3 5.1E-06 1.8E-10 94.7 13.6 187 154-359 39-253 (516)
173 3h4m_A Proteasome-activating n 98.2 6.4E-06 2.2E-10 86.4 12.9 177 154-357 17-229 (285)
174 3e4g_A ATP synthase subunit S, 98.2 8.5E-07 2.9E-11 83.8 4.8 88 721-829 62-155 (176)
175 1sxj_D Activator 1 41 kDa subu 98.2 5.2E-06 1.8E-10 90.2 11.5 193 154-358 37-234 (353)
176 3e4g_A ATP synthase subunit S, 98.2 8.8E-07 3E-11 83.7 4.0 87 754-852 61-154 (176)
177 1d2n_A N-ethylmaleimide-sensit 98.2 2.4E-05 8.2E-10 81.3 15.5 196 154-380 33-263 (272)
178 4fs7_A Uncharacterized protein 98.2 3.3E-05 1.1E-09 85.2 17.1 284 530-871 66-352 (394)
179 2ra8_A Uncharacterized protein 98.1 4.1E-06 1.4E-10 90.4 9.2 80 532-613 136-227 (362)
180 3pvs_A Replication-associated 98.1 2.7E-05 9.3E-10 86.4 15.2 174 154-358 26-214 (447)
181 1sxj_E Activator 1 40 kDa subu 98.1 1.2E-05 4.2E-10 87.2 11.5 195 154-359 14-237 (354)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3.7E-05 1.3E-09 79.4 14.4 180 154-358 6-221 (262)
183 3syl_A Protein CBBX; photosynt 98.1 8.8E-06 3E-10 86.5 9.7 154 155-328 32-219 (309)
184 4gt6_A Cell surface protein; l 98.0 8.6E-05 2.9E-09 81.8 16.5 103 531-638 110-213 (394)
185 3d8b_A Fidgetin-like protein 1 98.0 9.2E-05 3.1E-09 80.1 16.1 179 154-359 84-295 (357)
186 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00021 7.2E-09 75.9 18.5 180 154-359 12-223 (322)
187 2ra8_A Uncharacterized protein 98.0 7.1E-06 2.4E-10 88.5 6.6 137 532-682 169-320 (362)
188 3rw6_A Nuclear RNA export fact 98.0 2E-06 6.7E-11 87.9 1.8 82 556-638 167-259 (267)
189 3b9p_A CG5977-PA, isoform A; A 97.9 0.00017 5.8E-09 75.9 16.8 177 154-359 21-233 (297)
190 3uk6_A RUVB-like 2; hexameric 97.9 4.3E-05 1.5E-09 83.3 12.5 46 154-199 44-94 (368)
191 3eie_A Vacuolar protein sortin 97.9 0.00013 4.3E-09 77.8 15.6 179 154-359 18-228 (322)
192 1sxj_C Activator 1 40 kDa subu 97.9 4.4E-05 1.5E-09 82.1 12.2 177 154-356 25-209 (340)
193 1l8q_A Chromosomal replication 97.9 5.8E-05 2E-09 80.6 13.0 166 163-354 23-203 (324)
194 1a5t_A Delta prime, HOLB; zinc 97.9 0.00013 4.4E-09 78.1 15.3 169 160-359 8-205 (334)
195 3u61_B DNA polymerase accessor 97.9 5.7E-05 2E-09 80.7 12.3 174 154-355 26-212 (324)
196 2qp9_X Vacuolar protein sortin 97.9 0.00015 5E-09 78.3 15.5 180 154-359 51-261 (355)
197 3vfd_A Spastin; ATPase, microt 97.9 0.00021 7.3E-09 78.3 17.0 180 154-359 115-326 (389)
198 2p65_A Hypothetical protein PF 97.9 1.5E-05 5.2E-10 77.4 6.8 46 154-199 22-67 (187)
199 3pfi_A Holliday junction ATP-d 97.9 3.8E-05 1.3E-09 82.7 10.2 171 154-358 29-226 (338)
200 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.9E-10 78.2 4.7 81 532-612 33-128 (185)
201 1io0_A Tropomodulin; LRR prote 97.8 8.2E-06 2.8E-10 79.2 3.4 104 512-615 35-161 (185)
202 2zan_A Vacuolar protein sortin 97.8 0.00047 1.6E-08 76.7 17.7 181 154-359 134-345 (444)
203 4h09_A Hypothetical leucine ri 97.8 0.001 3.6E-08 72.6 20.0 124 510-640 43-168 (379)
204 3cf0_A Transitional endoplasmi 97.8 0.00016 5.4E-09 76.2 12.8 174 154-354 15-223 (301)
205 3rw6_A Nuclear RNA export fact 97.7 3.6E-05 1.2E-09 78.5 6.6 78 534-612 169-258 (267)
206 4b4t_J 26S protease regulatory 97.7 0.00035 1.2E-08 74.9 13.8 171 154-352 148-354 (405)
207 3pxg_A Negative regulator of g 97.7 0.00027 9.4E-09 79.2 13.5 149 154-327 180-339 (468)
208 2gno_A DNA polymerase III, gam 97.6 0.00027 9.4E-09 74.0 11.6 147 158-326 1-152 (305)
209 4b4t_L 26S protease subunit RP 97.6 0.00047 1.6E-08 75.3 13.6 171 154-352 181-387 (437)
210 3hu3_A Transitional endoplasmi 97.6 0.00041 1.4E-08 77.7 12.7 178 154-358 204-414 (489)
211 4b4t_H 26S protease regulatory 97.5 0.001 3.5E-08 72.3 14.3 170 154-351 209-414 (467)
212 1qvr_A CLPB protein; coiled co 97.5 0.0002 7E-09 86.9 9.8 154 154-326 170-345 (854)
213 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00094 3.2E-08 80.2 15.4 155 154-326 186-362 (758)
214 4b4t_K 26S protease regulatory 97.5 0.00067 2.3E-08 73.9 12.7 170 154-351 172-378 (428)
215 4b4t_I 26S protease regulatory 97.5 0.00078 2.7E-08 72.5 12.9 170 154-351 182-387 (437)
216 4b4t_M 26S protease regulatory 97.5 0.00042 1.4E-08 75.6 11.0 170 154-351 181-386 (434)
217 3ec2_A DNA replication protein 97.5 3.6E-05 1.2E-09 74.3 2.4 117 159-295 19-142 (180)
218 3n70_A Transport activator; si 97.4 0.0001 3.5E-09 68.1 5.1 45 155-199 2-48 (145)
219 3pxi_A Negative regulator of g 97.4 0.00089 3.1E-08 80.2 14.2 151 154-327 180-339 (758)
220 1lv7_A FTSH; alpha/beta domain 97.4 0.002 6.9E-08 65.9 14.5 176 154-356 12-222 (257)
221 4h09_A Hypothetical leucine ri 97.4 0.0051 1.7E-07 67.0 18.4 102 508-615 64-168 (379)
222 1ofh_A ATP-dependent HSL prote 97.3 0.0013 4.5E-08 69.5 12.3 46 154-199 15-74 (310)
223 1in4_A RUVB, holliday junction 97.3 0.0026 8.8E-08 67.9 14.3 171 154-358 25-222 (334)
224 2kjq_A DNAA-related protein; s 97.3 4.3E-05 1.5E-09 70.9 0.3 56 155-216 19-74 (149)
225 2w58_A DNAI, primosome compone 97.3 0.00038 1.3E-08 68.5 7.1 113 162-295 37-158 (202)
226 2r62_A Cell division protease 97.2 0.00021 7.1E-09 74.0 5.1 46 154-199 11-68 (268)
227 2ce7_A Cell division protein F 97.2 0.002 6.9E-08 71.5 12.9 172 154-352 16-221 (476)
228 3co5_A Putative two-component 97.1 0.00015 5.1E-09 66.8 2.0 45 155-199 5-51 (143)
229 3cf2_A TER ATPase, transitiona 97.0 0.0028 9.7E-08 74.5 12.0 171 155-352 205-407 (806)
230 4fcw_A Chaperone protein CLPB; 97.0 0.0016 5.5E-08 68.8 9.0 60 155-217 18-86 (311)
231 2c9o_A RUVB-like 1; hexameric 97.0 0.0027 9.1E-08 71.0 11.1 46 154-199 37-87 (456)
232 3m6a_A ATP-dependent protease 96.8 0.011 3.7E-07 67.4 14.1 45 155-199 82-132 (543)
233 1ypw_A Transitional endoplasmi 96.6 0.0037 1.3E-07 74.8 8.9 153 154-329 204-388 (806)
234 2x8a_A Nuclear valosin-contain 96.6 0.031 1.1E-06 57.4 14.6 150 154-327 10-192 (274)
235 3pxi_A Negative regulator of g 96.5 0.0012 4E-08 79.2 4.2 60 154-216 491-559 (758)
236 1iy2_A ATP-dependent metallopr 96.5 0.01 3.6E-07 61.3 10.8 171 154-352 40-245 (278)
237 1ixz_A ATP-dependent metallopr 96.5 0.011 3.9E-07 60.1 10.7 170 154-351 16-220 (254)
238 2dhr_A FTSH; AAA+ protein, hex 96.4 0.018 6.1E-07 64.3 12.2 171 154-352 31-236 (499)
239 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0019 6.7E-08 66.7 3.7 69 175-268 123-193 (331)
240 2cvh_A DNA repair and recombin 96.3 0.0098 3.4E-07 59.0 8.7 87 174-267 19-115 (220)
241 3hr8_A Protein RECA; alpha and 96.1 0.01 3.6E-07 63.0 8.3 86 174-267 60-149 (356)
242 1n0w_A DNA repair protein RAD5 96.1 0.014 4.7E-07 58.9 8.9 92 174-267 23-129 (243)
243 3t15_A Ribulose bisphosphate c 96.1 0.0059 2E-07 63.7 6.0 25 175-199 36-60 (293)
244 2z43_A DNA repair and recombin 95.9 0.025 8.6E-07 59.8 10.0 92 174-267 106-213 (324)
245 1v5w_A DMC1, meiotic recombina 95.8 0.033 1.1E-06 59.3 10.4 91 174-266 121-228 (343)
246 2b8t_A Thymidine kinase; deoxy 95.8 0.0041 1.4E-07 61.4 3.0 114 174-297 11-127 (223)
247 3io5_A Recombination and repai 95.8 0.029 1E-06 57.7 9.2 87 176-268 29-122 (333)
248 3ice_A Transcription terminati 95.7 0.0069 2.4E-07 63.9 4.4 53 165-218 163-216 (422)
249 1g5t_A COB(I)alamin adenosyltr 95.7 0.0063 2.2E-07 58.1 3.8 118 175-297 28-164 (196)
250 1xp8_A RECA protein, recombina 95.7 0.025 8.4E-07 60.6 8.7 86 174-267 73-162 (366)
251 2qgz_A Helicase loader, putati 95.6 0.0071 2.4E-07 63.5 4.3 40 160-199 134-176 (308)
252 2zr9_A Protein RECA, recombina 95.6 0.025 8.4E-07 60.3 8.4 86 174-267 60-149 (349)
253 1r6b_X CLPA protein; AAA+, N-t 95.5 0.017 6E-07 69.1 7.5 46 154-199 458-512 (758)
254 1rz3_A Hypothetical protein rb 95.5 0.015 5.1E-07 56.8 5.7 41 159-199 3-46 (201)
255 1u94_A RECA protein, recombina 95.4 0.03 1E-06 59.7 8.1 86 174-267 62-151 (356)
256 2bjv_A PSP operon transcriptio 95.3 0.015 5.3E-07 59.5 5.6 45 155-199 7-53 (265)
257 3rfe_A Platelet glycoprotein I 95.2 0.023 7.9E-07 50.8 5.7 32 584-615 33-65 (130)
258 2i1q_A DNA repair and recombin 95.2 0.039 1.3E-06 58.3 8.4 91 174-266 97-213 (322)
259 1qvr_A CLPB protein; coiled co 95.2 0.026 8.8E-07 68.4 7.6 45 155-199 559-612 (854)
260 1jr3_D DNA polymerase III, del 95.1 0.08 2.7E-06 56.5 10.5 162 167-357 10-183 (343)
261 3c8u_A Fructokinase; YP_612366 95.1 0.019 6.5E-07 56.4 5.0 38 162-199 7-46 (208)
262 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.047 1.6E-06 54.4 7.9 40 174-216 22-61 (235)
263 1ojl_A Transcriptional regulat 94.8 0.024 8.3E-07 59.2 5.3 46 154-199 2-49 (304)
264 4a74_A DNA repair and recombin 94.8 0.094 3.2E-06 52.1 9.5 59 174-233 24-85 (231)
265 1sky_E F1-ATPase, F1-ATP synth 94.8 0.072 2.5E-06 58.2 9.0 61 167-229 142-204 (473)
266 2px0_A Flagellar biosynthesis 94.8 0.074 2.5E-06 55.1 8.8 87 174-266 104-191 (296)
267 1qhx_A CPT, protein (chloramph 94.7 0.016 5.5E-07 55.2 3.4 24 176-199 4-27 (178)
268 1pzn_A RAD51, DNA repair and r 94.7 0.062 2.1E-06 57.3 8.2 92 174-267 130-241 (349)
269 2ga8_A Hypothetical 39.9 kDa p 94.7 0.033 1.1E-06 58.5 5.9 43 157-199 2-48 (359)
270 3kb2_A SPBC2 prophage-derived 94.7 0.017 5.9E-07 54.6 3.4 24 176-199 2-25 (173)
271 2ck3_D ATP synthase subunit be 94.6 0.18 6.3E-06 54.9 11.6 100 165-266 142-262 (482)
272 3rfe_A Platelet glycoprotein I 94.6 0.055 1.9E-06 48.3 6.4 35 536-570 32-66 (130)
273 3dm5_A SRP54, signal recogniti 94.6 0.11 3.6E-06 56.7 9.8 26 174-199 99-124 (443)
274 3lda_A DNA repair protein RAD5 94.6 0.11 3.9E-06 56.0 10.1 93 174-267 177-283 (400)
275 3lw7_A Adenylate kinase relate 94.5 0.018 6.2E-07 54.6 3.3 23 176-199 2-24 (179)
276 3vaa_A Shikimate kinase, SK; s 94.5 0.021 7.1E-07 55.6 3.6 26 174-199 24-49 (199)
277 2r44_A Uncharacterized protein 94.5 0.025 8.7E-07 60.1 4.5 44 154-199 27-70 (331)
278 1zp6_A Hypothetical protein AT 94.3 0.025 8.6E-07 54.5 3.8 26 174-199 8-33 (191)
279 1pgv_A TMD-1, tropomodulin TMD 94.3 0.052 1.8E-06 52.0 5.8 39 557-595 68-111 (197)
280 1pgv_A TMD-1, tropomodulin TMD 94.3 0.041 1.4E-06 52.8 5.0 117 555-682 37-170 (197)
281 1fx0_B ATP synthase beta chain 94.3 0.13 4.5E-06 56.3 9.5 99 166-266 155-275 (498)
282 3trf_A Shikimate kinase, SK; a 94.3 0.023 8E-07 54.4 3.4 25 175-199 5-29 (185)
283 2xxa_A Signal recognition part 94.2 0.18 6E-06 55.3 10.7 26 174-199 99-124 (433)
284 1ly1_A Polynucleotide kinase; 94.2 0.025 8.7E-07 53.8 3.6 22 176-197 3-24 (181)
285 1kgd_A CASK, peripheral plasma 94.2 0.025 8.4E-07 54.1 3.4 25 175-199 5-29 (180)
286 1kag_A SKI, shikimate kinase I 94.2 0.021 7.3E-07 54.0 2.9 24 176-199 5-28 (173)
287 2hf9_A Probable hydrogenase ni 94.1 0.042 1.5E-06 54.5 5.1 37 163-199 26-62 (226)
288 3uie_A Adenylyl-sulfate kinase 94.1 0.031 1.1E-06 54.4 4.1 28 172-199 22-49 (200)
289 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.038 1.3E-06 61.8 5.1 43 155-199 23-65 (500)
290 2yvu_A Probable adenylyl-sulfa 94.1 0.03 1E-06 53.8 3.8 26 174-199 12-37 (186)
291 3hws_A ATP-dependent CLP prote 94.1 0.046 1.6E-06 58.9 5.5 45 155-199 16-75 (363)
292 2orw_A Thymidine kinase; TMTK, 94.0 0.0051 1.8E-07 59.0 -1.8 24 176-199 4-27 (184)
293 1j8m_F SRP54, signal recogniti 94.0 0.074 2.5E-06 55.1 6.8 89 175-266 98-189 (297)
294 1nks_A Adenylate kinase; therm 94.0 0.029 1E-06 54.1 3.4 24 176-199 2-25 (194)
295 3t61_A Gluconokinase; PSI-biol 93.9 0.024 8.1E-07 55.3 2.7 25 175-199 18-42 (202)
296 4eun_A Thermoresistant glucoki 93.8 0.034 1.2E-06 54.1 3.6 27 173-199 27-53 (200)
297 1um8_A ATP-dependent CLP prote 93.8 0.052 1.8E-06 58.8 5.5 45 155-199 22-96 (376)
298 3iij_A Coilin-interacting nucl 93.8 0.029 9.9E-07 53.5 3.1 25 175-199 11-35 (180)
299 1kht_A Adenylate kinase; phosp 93.8 0.032 1.1E-06 53.8 3.4 24 176-199 4-27 (192)
300 1odf_A YGR205W, hypothetical 3 93.8 0.051 1.8E-06 56.1 5.1 27 173-199 29-55 (290)
301 1knq_A Gluconate kinase; ALFA/ 93.8 0.037 1.2E-06 52.5 3.6 25 175-199 8-32 (175)
302 2ffh_A Protein (FFH); SRP54, s 93.8 0.16 5.6E-06 55.2 9.1 25 175-199 98-122 (425)
303 1ex7_A Guanylate kinase; subst 93.7 0.026 8.8E-07 53.9 2.4 24 176-199 2-25 (186)
304 2rhm_A Putative kinase; P-loop 93.7 0.038 1.3E-06 53.3 3.7 25 175-199 5-29 (193)
305 2wsm_A Hydrogenase expression/ 93.7 0.043 1.5E-06 54.3 4.2 42 158-199 13-54 (221)
306 3e70_C DPA, signal recognition 93.7 0.24 8.2E-06 52.0 10.0 57 173-232 127-184 (328)
307 2ze6_A Isopentenyl transferase 93.7 0.035 1.2E-06 56.3 3.5 24 176-199 2-25 (253)
308 1via_A Shikimate kinase; struc 93.6 0.03 1E-06 53.1 2.8 24 176-199 5-28 (175)
309 3bh0_A DNAB-like replicative h 93.6 0.16 5.5E-06 53.2 8.7 52 174-230 67-118 (315)
310 1zuh_A Shikimate kinase; alpha 93.6 0.037 1.2E-06 52.1 3.4 25 175-199 7-31 (168)
311 1vma_A Cell division protein F 93.6 0.1 3.5E-06 54.3 7.0 89 174-266 103-195 (306)
312 2jaq_A Deoxyguanosine kinase; 93.6 0.036 1.2E-06 54.1 3.4 23 177-199 2-24 (205)
313 2qor_A Guanylate kinase; phosp 93.6 0.033 1.1E-06 54.4 3.1 26 174-199 11-36 (204)
314 3tr0_A Guanylate kinase, GMP k 93.6 0.037 1.3E-06 54.0 3.4 25 175-199 7-31 (205)
315 3tau_A Guanylate kinase, GMP k 93.5 0.043 1.5E-06 53.7 3.8 26 174-199 7-32 (208)
316 2bbw_A Adenylate kinase 4, AK4 93.5 0.039 1.3E-06 55.7 3.6 25 175-199 27-51 (246)
317 2bdt_A BH3686; alpha-beta prot 93.5 0.042 1.4E-06 52.9 3.6 23 176-198 3-25 (189)
318 1y63_A LMAJ004144AAA protein; 93.5 0.044 1.5E-06 52.5 3.7 25 174-198 9-33 (184)
319 1g8p_A Magnesium-chelatase 38 93.5 0.029 9.8E-07 60.2 2.6 46 154-199 24-69 (350)
320 2c95_A Adenylate kinase 1; tra 93.4 0.043 1.5E-06 53.1 3.5 25 175-199 9-33 (196)
321 1ye8_A Protein THEP1, hypothet 93.4 0.043 1.5E-06 52.2 3.4 23 177-199 2-24 (178)
322 4gp7_A Metallophosphoesterase; 93.4 0.041 1.4E-06 52.0 3.3 23 174-196 8-30 (171)
323 3a00_A Guanylate kinase, GMP k 93.4 0.035 1.2E-06 53.3 2.8 24 176-199 2-25 (186)
324 1tev_A UMP-CMP kinase; ploop, 93.4 0.044 1.5E-06 52.9 3.5 24 176-199 4-27 (196)
325 1ukz_A Uridylate kinase; trans 93.4 0.051 1.7E-06 53.0 4.0 26 174-199 14-39 (203)
326 3umf_A Adenylate kinase; rossm 93.3 0.048 1.6E-06 53.5 3.7 26 174-199 28-53 (217)
327 1cke_A CK, MSSA, protein (cyti 93.3 0.041 1.4E-06 54.7 3.4 24 176-199 6-29 (227)
328 3asz_A Uridine kinase; cytidin 93.3 0.047 1.6E-06 53.6 3.8 26 174-199 5-30 (211)
329 2dr3_A UPF0273 protein PH0284; 93.3 0.12 4.2E-06 51.9 7.0 41 174-217 22-62 (247)
330 2iyv_A Shikimate kinase, SK; t 93.3 0.034 1.1E-06 53.3 2.6 24 176-199 3-26 (184)
331 2if2_A Dephospho-COA kinase; a 93.3 0.042 1.4E-06 53.6 3.3 22 176-197 2-23 (204)
332 3cf2_A TER ATPase, transitiona 93.3 0.094 3.2E-06 61.7 6.7 91 154-268 477-581 (806)
333 2j41_A Guanylate kinase; GMP, 93.3 0.048 1.6E-06 53.3 3.7 25 175-199 6-30 (207)
334 3cm0_A Adenylate kinase; ATP-b 93.3 0.048 1.6E-06 52.2 3.5 24 176-199 5-28 (186)
335 4a1f_A DNAB helicase, replicat 93.2 0.47 1.6E-05 49.8 11.4 52 174-230 45-96 (338)
336 1uf9_A TT1252 protein; P-loop, 93.2 0.054 1.9E-06 52.7 3.9 26 173-198 6-31 (203)
337 3fwy_A Light-independent proto 93.2 0.049 1.7E-06 57.0 3.8 41 173-216 46-86 (314)
338 2qt1_A Nicotinamide riboside k 93.2 0.053 1.8E-06 53.0 3.8 26 174-199 20-45 (207)
339 3kl4_A SRP54, signal recogniti 93.2 0.31 1.1E-05 53.1 10.1 26 174-199 96-121 (433)
340 2bwj_A Adenylate kinase 5; pho 93.2 0.045 1.5E-06 53.1 3.3 25 175-199 12-36 (199)
341 1gvn_B Zeta; postsegregational 93.2 0.079 2.7E-06 54.7 5.3 26 174-199 32-57 (287)
342 1e6c_A Shikimate kinase; phosp 93.1 0.04 1.4E-06 52.0 2.8 24 176-199 3-26 (173)
343 1xjc_A MOBB protein homolog; s 93.1 0.053 1.8E-06 50.7 3.5 26 174-199 3-28 (169)
344 1jjv_A Dephospho-COA kinase; P 93.1 0.05 1.7E-06 53.1 3.5 22 176-197 3-24 (206)
345 3ney_A 55 kDa erythrocyte memb 93.1 0.055 1.9E-06 52.0 3.6 26 174-199 18-43 (197)
346 2plr_A DTMP kinase, probable t 93.1 0.05 1.7E-06 53.3 3.5 24 176-199 5-28 (213)
347 3cmu_A Protein RECA, recombina 93.1 0.16 5.5E-06 65.4 8.7 86 174-267 1426-1515(2050)
348 1lvg_A Guanylate kinase, GMP k 93.1 0.042 1.4E-06 53.3 2.8 24 176-199 5-28 (198)
349 3l0o_A Transcription terminati 93.0 0.24 8.3E-06 52.2 8.6 53 164-217 163-216 (427)
350 1uj2_A Uridine-cytidine kinase 93.0 0.057 2E-06 54.7 3.9 26 174-199 21-46 (252)
351 2pt5_A Shikimate kinase, SK; a 93.0 0.053 1.8E-06 50.9 3.4 23 177-199 2-24 (168)
352 1qf9_A UMP/CMP kinase, protein 93.0 0.053 1.8E-06 52.2 3.5 25 175-199 6-30 (194)
353 2grj_A Dephospho-COA kinase; T 93.0 0.058 2E-06 51.9 3.6 26 174-199 11-36 (192)
354 1g41_A Heat shock protein HSLU 93.0 0.063 2.1E-06 58.6 4.3 46 154-199 15-74 (444)
355 2cdn_A Adenylate kinase; phosp 92.9 0.053 1.8E-06 52.7 3.4 25 175-199 20-44 (201)
356 2pbr_A DTMP kinase, thymidylat 92.9 0.055 1.9E-06 52.2 3.4 23 177-199 2-24 (195)
357 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.062 2.1E-06 54.7 3.9 25 175-199 4-28 (260)
358 2vli_A Antibiotic resistance p 92.8 0.04 1.4E-06 52.6 2.2 25 175-199 5-29 (183)
359 4e22_A Cytidylate kinase; P-lo 92.7 0.059 2E-06 54.6 3.5 26 174-199 26-51 (252)
360 1tue_A Replication protein E1; 92.7 0.091 3.1E-06 50.4 4.4 37 163-199 45-82 (212)
361 3tqc_A Pantothenate kinase; bi 92.7 0.1 3.5E-06 54.5 5.2 43 157-199 70-116 (321)
362 1znw_A Guanylate kinase, GMP k 92.7 0.06 2.1E-06 52.7 3.3 26 174-199 19-44 (207)
363 3aez_A Pantothenate kinase; tr 92.6 0.07 2.4E-06 55.7 4.0 27 173-199 88-114 (312)
364 1htw_A HI0065; nucleotide-bind 92.6 0.072 2.4E-06 49.4 3.6 27 173-199 31-57 (158)
365 2wwf_A Thymidilate kinase, put 92.6 0.067 2.3E-06 52.4 3.6 25 175-199 10-34 (212)
366 2jeo_A Uridine-cytidine kinase 92.6 0.076 2.6E-06 53.5 4.0 26 174-199 24-49 (245)
367 2p5t_B PEZT; postsegregational 92.5 0.094 3.2E-06 53.1 4.7 26 174-199 31-56 (253)
368 1gtv_A TMK, thymidylate kinase 92.5 0.039 1.3E-06 54.2 1.8 23 177-199 2-24 (214)
369 1zd8_A GTP:AMP phosphotransfer 92.5 0.065 2.2E-06 53.3 3.3 25 175-199 7-31 (227)
370 3fb4_A Adenylate kinase; psych 92.5 0.066 2.3E-06 52.7 3.4 23 177-199 2-24 (216)
371 1nn5_A Similar to deoxythymidy 92.4 0.071 2.4E-06 52.4 3.5 25 175-199 9-33 (215)
372 3tlx_A Adenylate kinase 2; str 92.4 0.12 4.2E-06 51.9 5.3 26 174-199 28-53 (243)
373 1z6g_A Guanylate kinase; struc 92.4 0.058 2E-06 53.2 2.8 26 174-199 22-47 (218)
374 3dl0_A Adenylate kinase; phosp 92.4 0.071 2.4E-06 52.5 3.5 23 177-199 2-24 (216)
375 2yhs_A FTSY, cell division pro 92.4 0.34 1.2E-05 53.3 9.0 26 174-199 292-317 (503)
376 2v54_A DTMP kinase, thymidylat 92.3 0.073 2.5E-06 51.8 3.4 25 175-199 4-28 (204)
377 2z0h_A DTMP kinase, thymidylat 92.3 0.073 2.5E-06 51.4 3.5 23 177-199 2-24 (197)
378 1aky_A Adenylate kinase; ATP:A 92.3 0.076 2.6E-06 52.5 3.6 25 175-199 4-28 (220)
379 2j37_W Signal recognition part 92.3 0.52 1.8E-05 52.4 10.6 26 174-199 100-125 (504)
380 1ls1_A Signal recognition part 92.2 0.29 9.9E-06 50.6 7.9 89 175-266 98-189 (295)
381 2f1r_A Molybdopterin-guanine d 92.1 0.056 1.9E-06 50.9 2.2 24 176-199 3-26 (171)
382 1s96_A Guanylate kinase, GMP k 92.1 0.087 3E-06 51.9 3.7 26 174-199 15-40 (219)
383 2pez_A Bifunctional 3'-phospho 92.0 0.099 3.4E-06 49.6 3.8 25 175-199 5-29 (179)
384 1rj9_A FTSY, signal recognitio 91.9 0.091 3.1E-06 54.6 3.7 26 174-199 101-126 (304)
385 1zak_A Adenylate kinase; ATP:A 91.9 0.078 2.7E-06 52.5 3.1 25 175-199 5-29 (222)
386 3hjn_A DTMP kinase, thymidylat 91.9 0.22 7.7E-06 48.0 6.3 23 177-199 2-24 (197)
387 1m7g_A Adenylylsulfate kinase; 91.9 0.091 3.1E-06 51.5 3.6 27 173-199 23-49 (211)
388 2i3b_A HCR-ntpase, human cance 91.8 0.078 2.7E-06 50.8 2.9 24 176-199 2-25 (189)
389 3sr0_A Adenylate kinase; phosp 91.8 0.091 3.1E-06 51.1 3.4 23 177-199 2-24 (206)
390 2r9v_A ATP synthase subunit al 91.8 0.32 1.1E-05 53.4 7.9 97 165-266 164-276 (515)
391 3d3q_A TRNA delta(2)-isopenten 91.7 0.097 3.3E-06 54.8 3.7 24 176-199 8-31 (340)
392 3r20_A Cytidylate kinase; stru 91.7 0.093 3.2E-06 52.0 3.4 25 175-199 9-33 (233)
393 3nwj_A ATSK2; P loop, shikimat 91.7 0.078 2.7E-06 53.4 2.8 25 175-199 48-72 (250)
394 2qe7_A ATP synthase subunit al 91.7 0.29 9.9E-06 53.6 7.4 96 166-266 152-263 (502)
395 1np6_A Molybdopterin-guanine d 91.6 0.11 3.7E-06 49.0 3.5 25 175-199 6-30 (174)
396 2onk_A Molybdate/tungstate ABC 91.6 0.098 3.4E-06 52.3 3.5 26 173-199 23-48 (240)
397 1vht_A Dephospho-COA kinase; s 91.6 0.1 3.5E-06 51.4 3.6 23 175-197 4-26 (218)
398 3gqb_B V-type ATP synthase bet 91.5 0.17 5.7E-06 54.9 5.3 100 166-266 137-260 (464)
399 3ake_A Cytidylate kinase; CMP 91.5 0.1 3.4E-06 51.0 3.4 23 177-199 4-26 (208)
400 3be4_A Adenylate kinase; malar 91.5 0.098 3.4E-06 51.5 3.3 24 176-199 6-29 (217)
401 1e4v_A Adenylate kinase; trans 91.4 0.1 3.5E-06 51.3 3.3 23 177-199 2-24 (214)
402 2f6r_A COA synthase, bifunctio 91.3 0.11 3.9E-06 53.4 3.8 24 174-197 74-97 (281)
403 2xb4_A Adenylate kinase; ATP-b 91.3 0.11 3.6E-06 51.6 3.4 23 177-199 2-24 (223)
404 2pcj_A ABC transporter, lipopr 91.3 0.092 3.1E-06 52.0 2.9 26 174-199 29-54 (224)
405 3tif_A Uncharacterized ABC tra 91.3 0.11 3.7E-06 51.9 3.4 26 174-199 30-55 (235)
406 3vr4_D V-type sodium ATPase su 91.3 0.26 8.8E-06 53.4 6.4 98 166-266 141-257 (465)
407 3end_A Light-independent proto 91.2 0.16 5.6E-06 53.0 4.9 42 173-217 39-80 (307)
408 2ehv_A Hypothetical protein PH 91.2 0.11 3.6E-06 52.5 3.3 24 174-197 29-52 (251)
409 3p32_A Probable GTPase RV1496/ 91.2 0.31 1.1E-05 52.0 7.1 37 163-199 65-103 (355)
410 3b9q_A Chloroplast SRP recepto 91.2 0.13 4.3E-06 53.5 3.9 26 174-199 99-124 (302)
411 1sq5_A Pantothenate kinase; P- 91.2 0.12 4.3E-06 53.9 3.9 27 173-199 78-104 (308)
412 3fdi_A Uncharacterized protein 91.1 0.26 9E-06 47.7 5.9 25 175-199 6-30 (201)
413 3lnc_A Guanylate kinase, GMP k 91.1 0.076 2.6E-06 53.0 2.1 25 175-199 27-52 (231)
414 3k1j_A LON protease, ATP-depen 91.1 0.15 5E-06 59.0 4.8 43 155-199 42-84 (604)
415 3crm_A TRNA delta(2)-isopenten 91.1 0.12 4.2E-06 53.7 3.6 24 176-199 6-29 (323)
416 4eaq_A DTMP kinase, thymidylat 91.0 0.24 8.2E-06 49.1 5.6 26 174-199 25-50 (229)
417 2cbz_A Multidrug resistance-as 91.0 0.12 4.1E-06 51.6 3.4 26 174-199 30-55 (237)
418 1ak2_A Adenylate kinase isoenz 91.0 0.12 4.1E-06 51.6 3.4 25 175-199 16-40 (233)
419 3b85_A Phosphate starvation-in 90.9 0.089 3E-06 51.3 2.3 24 175-198 22-45 (208)
420 3a8t_A Adenylate isopentenyltr 90.8 0.13 4.6E-06 53.6 3.6 25 175-199 40-64 (339)
421 3exa_A TRNA delta(2)-isopenten 90.8 0.14 4.8E-06 52.7 3.7 25 175-199 3-27 (322)
422 1fx0_A ATP synthase alpha chai 90.8 0.28 9.7E-06 53.8 6.2 86 174-266 162-264 (507)
423 3gfo_A Cobalt import ATP-bindi 90.7 0.11 3.9E-06 53.0 3.0 26 174-199 33-58 (275)
424 1b0u_A Histidine permease; ABC 90.7 0.13 4.4E-06 52.3 3.4 26 174-199 31-56 (262)
425 3oaa_A ATP synthase subunit al 90.6 0.56 1.9E-05 51.2 8.3 97 166-266 152-263 (513)
426 1ji0_A ABC transporter; ATP bi 90.6 0.12 4.1E-06 51.7 3.0 26 174-199 31-56 (240)
427 2d2e_A SUFC protein; ABC-ATPas 90.6 0.13 4.6E-06 51.8 3.3 25 174-198 28-52 (250)
428 2pze_A Cystic fibrosis transme 90.6 0.12 4.2E-06 51.3 3.0 26 174-199 33-58 (229)
429 1sgw_A Putative ABC transporte 90.5 0.1 3.6E-06 51.0 2.4 26 174-199 34-59 (214)
430 3mfy_A V-type ATP synthase alp 90.5 0.49 1.7E-05 52.3 7.8 58 165-227 216-275 (588)
431 2olj_A Amino acid ABC transpor 90.5 0.14 4.7E-06 52.0 3.4 26 174-199 49-74 (263)
432 2ck3_A ATP synthase subunit al 90.5 0.4 1.4E-05 52.6 7.1 102 165-266 151-271 (510)
433 1g6h_A High-affinity branched- 90.5 0.12 4.3E-06 52.2 3.0 26 174-199 32-57 (257)
434 4g1u_C Hemin import ATP-bindin 90.4 0.13 4.3E-06 52.4 3.0 26 174-199 36-61 (266)
435 1mv5_A LMRA, multidrug resista 90.4 0.15 5.2E-06 51.1 3.5 26 174-199 27-52 (243)
436 2zu0_C Probable ATP-dependent 90.4 0.14 4.8E-06 52.2 3.3 25 174-198 45-69 (267)
437 1oix_A RAS-related protein RAB 90.4 0.15 5E-06 49.0 3.3 25 175-199 29-53 (191)
438 2ff7_A Alpha-hemolysin translo 90.4 0.13 4.5E-06 51.7 3.0 26 174-199 34-59 (247)
439 1vpl_A ABC transporter, ATP-bi 90.2 0.15 5.2E-06 51.5 3.4 26 174-199 40-65 (256)
440 2og2_A Putative signal recogni 90.2 0.17 5.9E-06 53.7 3.9 26 174-199 156-181 (359)
441 2eyu_A Twitching motility prot 90.2 0.24 8.1E-06 50.2 4.7 27 173-199 23-49 (261)
442 1yrb_A ATP(GTP)binding protein 90.1 0.17 5.9E-06 51.4 3.8 26 174-199 13-38 (262)
443 2c61_A A-type ATP synthase non 90.1 0.32 1.1E-05 53.0 5.9 100 166-266 142-258 (469)
444 2ixe_A Antigen peptide transpo 90.1 0.16 5.4E-06 51.9 3.4 26 174-199 44-69 (271)
445 3foz_A TRNA delta(2)-isopenten 90.0 0.18 6E-06 51.9 3.6 25 175-199 10-34 (316)
446 2ghi_A Transport protein; mult 90.0 0.16 5.5E-06 51.5 3.4 26 174-199 45-70 (260)
447 2qi9_C Vitamin B12 import ATP- 90.0 0.14 5E-06 51.4 3.0 26 174-199 25-50 (249)
448 2dyk_A GTP-binding protein; GT 90.0 0.19 6.5E-06 46.3 3.6 24 176-199 2-25 (161)
449 1ltq_A Polynucleotide kinase; 89.9 0.17 5.8E-06 52.8 3.6 24 176-199 3-26 (301)
450 2v9p_A Replication protein E1; 89.9 0.18 6.2E-06 52.1 3.7 27 173-199 124-150 (305)
451 2yz2_A Putative ABC transporte 89.8 0.17 5.8E-06 51.5 3.4 26 174-199 32-57 (266)
452 2nq2_C Hypothetical ABC transp 89.8 0.15 5.2E-06 51.4 3.0 26 174-199 30-55 (253)
453 2ihy_A ABC transporter, ATP-bi 89.8 0.15 5.2E-06 52.2 3.0 26 174-199 46-71 (279)
454 2wji_A Ferrous iron transport 89.8 0.18 6.2E-06 46.9 3.3 23 176-198 4-26 (165)
455 3cmu_A Protein RECA, recombina 89.8 0.55 1.9E-05 60.5 8.5 86 174-267 382-471 (2050)
456 4edh_A DTMP kinase, thymidylat 89.8 0.45 1.5E-05 46.4 6.2 25 175-199 6-30 (213)
457 3vr4_A V-type sodium ATPase ca 89.7 0.6 2.1E-05 51.8 7.7 58 165-227 221-280 (600)
458 2f9l_A RAB11B, member RAS onco 89.7 0.18 6.3E-06 48.6 3.4 24 176-199 6-29 (199)
459 1q57_A DNA primase/helicase; d 89.6 0.84 2.9E-05 51.3 9.2 52 174-229 241-292 (503)
460 2zej_A Dardarin, leucine-rich 89.6 0.15 5.1E-06 48.6 2.6 22 177-198 4-25 (184)
461 1q3t_A Cytidylate kinase; nucl 89.6 0.21 7.1E-06 49.9 3.8 26 174-199 15-40 (236)
462 1a7j_A Phosphoribulokinase; tr 89.5 0.099 3.4E-06 54.0 1.3 26 174-199 4-29 (290)
463 3io3_A DEHA2D07832P; chaperone 89.5 0.38 1.3E-05 51.0 5.8 48 171-219 14-61 (348)
464 1zu4_A FTSY; GTPase, signal re 89.5 0.22 7.4E-06 52.2 3.9 26 174-199 104-129 (320)
465 2vp4_A Deoxynucleoside kinase; 89.5 0.16 5.6E-06 50.4 2.9 25 174-198 19-43 (230)
466 3iqw_A Tail-anchored protein t 89.4 0.46 1.6E-05 50.0 6.4 47 171-220 12-58 (334)
467 3zvl_A Bifunctional polynucleo 89.4 0.2 6.7E-06 54.9 3.7 27 173-199 256-282 (416)
468 2ocp_A DGK, deoxyguanosine kin 89.3 0.23 7.7E-06 49.8 3.8 25 175-199 2-26 (241)
469 3lv8_A DTMP kinase, thymidylat 89.3 0.49 1.7E-05 46.9 6.1 36 175-212 27-62 (236)
470 1p9r_A General secretion pathw 89.2 0.53 1.8E-05 51.2 6.9 28 172-199 164-191 (418)
471 3f9v_A Minichromosome maintena 89.2 0.12 4.1E-06 59.3 1.9 46 154-199 295-351 (595)
472 3cmw_A Protein RECA, recombina 89.2 0.51 1.7E-05 60.0 7.5 86 174-267 382-471 (1706)
473 2ce2_X GTPase HRAS; signaling 89.2 0.2 6.7E-06 46.3 3.1 23 177-199 5-27 (166)
474 2qmh_A HPR kinase/phosphorylas 89.2 0.2 7E-06 47.7 3.0 25 175-199 34-58 (205)
475 3sop_A Neuronal-specific septi 89.1 0.2 6.9E-06 51.0 3.3 23 177-199 4-26 (270)
476 4tmk_A Protein (thymidylate ki 89.0 0.49 1.7E-05 46.1 5.8 24 176-199 4-27 (213)
477 2pjz_A Hypothetical protein ST 88.9 0.2 6.7E-06 50.9 3.0 24 175-198 30-53 (263)
478 1z2a_A RAS-related protein RAB 88.9 0.21 7.3E-06 46.3 3.1 24 176-199 6-29 (168)
479 2wjg_A FEOB, ferrous iron tran 88.8 0.23 8E-06 47.2 3.4 23 176-198 8-30 (188)
480 2ged_A SR-beta, signal recogni 88.8 0.4 1.4E-05 45.8 5.1 26 174-199 47-72 (193)
481 1svm_A Large T antigen; AAA+ f 88.8 0.25 8.4E-06 52.9 3.8 27 173-199 167-193 (377)
482 1cp2_A CP2, nitrogenase iron p 88.8 0.38 1.3E-05 49.0 5.2 38 176-216 2-39 (269)
483 3con_A GTPase NRAS; structural 88.7 0.23 7.7E-06 47.5 3.1 24 176-199 22-45 (190)
484 1g8f_A Sulfate adenylyltransfe 88.6 0.32 1.1E-05 54.1 4.7 43 157-199 375-419 (511)
485 3nh6_A ATP-binding cassette SU 88.6 0.2 6.7E-06 52.0 2.8 26 174-199 79-104 (306)
486 1nlf_A Regulatory protein REPA 88.6 0.22 7.4E-06 51.2 3.1 26 174-199 29-54 (279)
487 2r8r_A Sensor protein; KDPD, P 88.5 0.38 1.3E-05 47.0 4.6 24 176-199 7-30 (228)
488 3cmw_A Protein RECA, recombina 88.5 0.6 2.1E-05 59.4 7.5 85 174-266 1430-1518(1706)
489 1zj6_A ADP-ribosylation factor 88.4 0.43 1.5E-05 45.4 5.0 34 164-198 6-39 (187)
490 1fzq_A ADP-ribosylation factor 88.4 0.28 9.7E-06 46.4 3.6 26 173-198 14-39 (181)
491 2bbs_A Cystic fibrosis transme 88.4 0.24 8.3E-06 51.0 3.3 26 174-199 63-88 (290)
492 3eph_A TRNA isopentenyltransfe 88.3 0.25 8.6E-06 52.8 3.4 24 176-199 3-26 (409)
493 1u8z_A RAS-related protein RAL 88.2 0.25 8.7E-06 45.7 3.1 24 176-199 5-28 (168)
494 3gmt_A Adenylate kinase; ssgci 88.2 0.25 8.6E-06 48.6 3.1 24 176-199 9-32 (230)
495 2nzj_A GTP-binding protein REM 88.2 0.24 8.1E-06 46.4 2.9 24 176-199 5-28 (175)
496 3fvq_A Fe(3+) IONS import ATP- 88.1 0.25 8.5E-06 52.3 3.2 26 174-199 29-54 (359)
497 4gzl_A RAS-related C3 botulinu 88.1 0.3 1E-05 47.4 3.6 28 172-199 27-54 (204)
498 1cr0_A DNA primase/helicase; R 88.0 0.25 8.6E-06 51.3 3.2 26 174-199 34-59 (296)
499 3tui_C Methionine import ATP-b 88.0 0.26 8.9E-06 52.2 3.3 26 174-199 53-78 (366)
500 2gj8_A MNME, tRNA modification 88.0 0.26 8.7E-06 46.3 3.0 24 176-199 5-28 (172)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.2e-47 Score=442.93 Aligned_cols=312 Identities=16% Similarity=0.159 Sum_probs=252.4
Q ss_pred cccchhhHHHHHHHHHcCC---CCeEEEEEcCCCCcHHHHHHHHHh--hcccCCCCCceEEEEEeCCcc--CHHHHHHHH
Q 042327 155 TVVGLESTLQKVWRCIVED---PAVIIGIYGMGGVGKTTLLTHINN--KFLEGPNTFDCVIWVVVSKDL--RVEYIQEVI 227 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i 227 (911)
..|||+.++++|.++|..+ ..++|+|+||||+||||||+.+|+ +. +++.+|+.++||++++.+ +...++..|
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 3369999999999999653 689999999999999999999998 44 568899999999999985 889999999
Q ss_pred HHHcCCCCC-----cccccCHHHHHHHHHHHccCC-cEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHhhh
Q 042327 228 AKQMGFFDD-----SWRAKSVEEKALEIFNSLSEK-KFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGF 301 (911)
Q Consensus 228 ~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~~ 301 (911)
+++++.... .....+.+.+...+++.|+++ ||||||||||+..++ .+ + ..+||+||||||++.++..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~--~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A--QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H--HHTTCEEEEEESBGGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c--ccCCCEEEEEcCCHHHHHH
Confidence 999986421 112335677889999999996 999999999987654 11 1 1269999999999999987
Q ss_pred cc-ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHHHHHHHHHhh
Q 042327 302 ME-AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYAIQLLSS 380 (911)
Q Consensus 302 ~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~ 380 (911)
++ ...+|++++|+++|||+||.+.++... .++.+++++++|+++|+|+||||+++|+.++.+ + |+.+ +.+.+
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH
Confidence 76 446799999999999999999987653 246788999999999999999999999999764 2 5443 44444
Q ss_pred cccCCCCCCCcccchhhhccCCCCchhhhhHhh-----------hhccCCCCcccCHHHHHHHHHhc--CCcccCc-cch
Q 042327 381 SASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLL-----------YCSLYPEDYCISKENLIDCWIGE--GLLNESD-RFG 446 (911)
Q Consensus 381 ~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~wiae--g~i~~~~-~~~ 446 (911)
..+... .+.+..++.+||++||+ ++|.||+ |||+||+++.|+ ++.|+|+ ||+...+ ...
T Consensus 354 ~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 354 KLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred Hhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 332211 24789999999999998 8999999 999999999999 8999999 9998744 445
Q ss_pred hhhhHHHHHHHHHHhcccccc---CCCeeecchhHHHHHHHHHhhc
Q 042327 447 EQNQGYFILGILLHACLLEEG---GDGEVKMHDVIRDMSLWIACDL 489 (911)
Q Consensus 447 ~~~~~~~~l~~L~~~~ll~~~---~~~~~~mhdlv~~~a~~~~~~~ 489 (911)
.++.++ |+++|+++||++.. ....|+|||+||++|++++.+.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 666666 99999999999985 3467999999999999887653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.5e-39 Score=371.35 Aligned_cols=286 Identities=17% Similarity=0.219 Sum_probs=229.9
Q ss_pred CcccchhhHHHHHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCce-EEEEEeCCccCHHHHHHHHHHHc
Q 042327 154 PTVVGLESTLQKVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDC-VIWVVVSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l 231 (911)
+..|||+.++++|.++|.. +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|++.+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3459999999999999975 568999999999999999999999875 45678986 99999999999888888887754
Q ss_pred CCCC---C-cc-----cccCHHHHHHHHHHHc---cCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHh
Q 042327 232 GFFD---D-SW-----RAKSVEEKALEIFNSL---SEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVC 299 (911)
Q Consensus 232 ~~~~---~-~~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~ 299 (911)
+... . .. ...+.++....+++.| .++|+||||||||+...|+.+. .||+||||||++.++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC--------CCeEEEEeccChHHH
Confidence 3110 0 00 0112345566666655 7899999999999987777542 589999999999998
Q ss_pred hhccccceEEec------cCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCC-CHHHHH
Q 042327 300 GFMEAHRKFKMV------CLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKK-TPEEWR 372 (911)
Q Consensus 300 ~~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~-~~~~w~ 372 (911)
..+.....+.++ +|+++|||+||.+..+.. . .++..++ |+|+||||+++|+.|+.+. +.++|+
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 755544466777 999999999999985432 1 1233333 9999999999999998763 678887
Q ss_pred HHHHHHhhcccCCCCCCCcccchhhhccCCCCchhh-hhHhhhhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhhH
Q 042327 373 YAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTI-RSCLLYCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQG 451 (911)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~ 451 (911)
.. ..+.+..+|.+||+.||+ +. |+||+|||+||+++.|+++.++..|+++| ++.+
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred cC-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 52 124789999999999999 67 99999999999999999999999999887 2357
Q ss_pred HHHHHHHHHhcccccc-CCCeeecchhHHHHH
Q 042327 452 YFILGILLHACLLEEG-GDGEVKMHDVIRDMS 482 (911)
Q Consensus 452 ~~~l~~L~~~~ll~~~-~~~~~~mhdlv~~~a 482 (911)
..++++|+++||++.. ....|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 8899999999999985 467899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.9e-36 Score=384.84 Aligned_cols=310 Identities=19% Similarity=0.219 Sum_probs=251.1
Q ss_pred CCcccchhhHHHHHHHHHc--CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCC-CCceEEEEEeCCccC--HHHHHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIV--EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPN-TFDCVIWVVVSKDLR--VEYIQEVI 227 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~F~~~~wv~vs~~~~--~~~~~~~i 227 (911)
.+.||||++++++|.+.|. +++.++|+|+||||+||||||+++|++...... .|+.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 4569999999999999995 357899999999999999999999998522244 457888999998544 44556778
Q ss_pred HHHcCCCCC--cccccCHHHHHHHHHHHccCC--cEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHhhh-c
Q 042327 228 AKQMGFFDD--SWRAKSVEEKALEIFNSLSEK--KFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGF-M 302 (911)
Q Consensus 228 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~~-~ 302 (911)
+..+..... .....+.+++...++..+.++ |+||||||||+..+|..+ .+|++||||||++.++.. +
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhhc
Confidence 877765432 113456788899999999887 999999999988776643 468999999999999854 4
Q ss_pred cccceEEecc-CCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHHHHHHHHHhhc
Q 042327 303 EAHRKFKMVC-LSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYAIQLLSSS 381 (911)
Q Consensus 303 ~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~ 381 (911)
.....+++.+ |+++||++||...++... +.+.+++++|+++|+|+||||+++|+.|+.+. ..|+..++.+...
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 5667889996 999999999999885432 33456799999999999999999999998654 5799988888765
Q ss_pred ccCC-CC----CCCcccchhhhccCCCCchhhhhHhhhhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhhHHHHHH
Q 042327 382 ASQF-PG----FGEGVYPLLKFSYDSLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQGYFILG 456 (911)
Q Consensus 382 ~~~~-~~----~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~~l~ 456 (911)
.+.. .. ..+.+..++.+||+.||+ +.|.||+|||+||+++.|+++.++..|.++ .+.++.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~ 416 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQ 416 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHH
Confidence 4321 11 113588999999999999 799999999999999999999999999654 467788999
Q ss_pred HHHHhccccccC---CCeeecchhHHHHHHHHHhh
Q 042327 457 ILLHACLLEEGG---DGEVKMHDVIRDMSLWIACD 488 (911)
Q Consensus 457 ~L~~~~ll~~~~---~~~~~mhdlv~~~a~~~~~~ 488 (911)
+|++++|++... ...|+||++||++++..+.+
T Consensus 417 ~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 417 EFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 999999999763 33599999999999988654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=331.93 Aligned_cols=305 Identities=19% Similarity=0.247 Sum_probs=235.5
Q ss_pred CCcccchhhHHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhcccC-CCCC-ceEEEEEeCCccCHHHHHHH--
Q 042327 153 DPTVVGLESTLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKFLEG-PNTF-DCVIWVVVSKDLRVEYIQEV-- 226 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~-- 226 (911)
.+.||||+.+++++.++|.. ++.++|+|+||||+||||||+.++++. .+ ..+| +.++|++++.. +...+...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 45699999999999999974 467999999999999999999999875 33 4678 58999999876 33334333
Q ss_pred -HHHHcCCCC--CcccccCHHHHHHHHHHHccC--CcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHhhh
Q 042327 227 -IAKQMGFFD--DSWRAKSVEEKALEIFNSLSE--KKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVCGF 301 (911)
Q Consensus 227 -i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~~~ 301 (911)
++..++... ......+.+.....+...+.+ +++||||||+|+...+..+ ..|++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHHHHh
Confidence 344554211 112345667778888888876 7899999999986555432 458999999999998765
Q ss_pred ccccceEEe---ccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcCCCCHHHHHHHHHHH
Q 042327 302 MEAHRKFKM---VCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMACKKTPEEWRYAIQLL 378 (911)
Q Consensus 302 ~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~l 378 (911)
+. ...+++ ++|+.+|+++||.+.++... ....+.+.+|+++|+|+||||..+|+.++... ..|...++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 43 234444 58999999999999887532 22235788999999999999999999998643 4799888887
Q ss_pred hhcccC-C----CCCCCcccchhhhccCCCCchhhhhHhhhhccCCCCcccCHHHHHHHHHhcCCcccCccchhhhhHHH
Q 042327 379 SSSASQ-F----PGFGEGVYPLLKFSYDSLPNDTIRSCLLYCSLYPEDYCISKENLIDCWIGEGLLNESDRFGEQNQGYF 453 (911)
Q Consensus 379 ~~~~~~-~----~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wiaeg~i~~~~~~~~~~~~~~ 453 (911)
...... . ......+..++..||+.||+ +.|.||++||+||+++.|+.+.++..|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHH
Confidence 754321 1 11123678899999999999 799999999999999999999999999542 245678
Q ss_pred HHHHHHHhcccccc---CCCeeecchhHHHHHHHHH
Q 042327 454 ILGILLHACLLEEG---GDGEVKMHDVIRDMSLWIA 486 (911)
Q Consensus 454 ~l~~L~~~~ll~~~---~~~~~~mhdlv~~~a~~~~ 486 (911)
++.+|+++||++.. ....|+||+++|++++...
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 89999999999864 2347999999999998763
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.9e-25 Score=243.59 Aligned_cols=304 Identities=16% Similarity=0.188 Sum_probs=212.8
Q ss_pred CCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCE
Q 042327 507 PDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQ 586 (911)
Q Consensus 507 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 586 (911)
.....++++++|++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+| .+.++++|++
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3445667888888888888888778888888888888888887776 778888888888888888776 5888888888
Q ss_pred EeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhc
Q 042327 587 LDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELL 666 (911)
Q Consensus 587 L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 666 (911)
|++++|.++.+|. +..+++|++|++++|..+..++. +..+++|++|++++|..... ..+.
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----------------~~~~ 174 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-----------------TPIA 174 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------GGGG
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-----------------hhhc
Confidence 8888888888876 77888888888888866665554 78888888888887743321 1166
Q ss_pred CCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeecccccccc
Q 042327 667 GLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQA 746 (911)
Q Consensus 667 ~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 746 (911)
.+++|+.|+++.|.+..+.. ......++.+.+.++. ++... .+..+++|+.|++++|. +..++. ..
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~n~-l~~~~~--~~---- 240 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQ-ITDIT--PVANMTRLNSLKIGNNK-ITDLSP--LA---- 240 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSSC-CCCCGG--GT----
T ss_pred cCCCCCEEEccCCccccccc----ccCCCccceeecccCC-CCCCc--hhhcCCcCCEEEccCCc-cCCCcc--hh----
Confidence 77888888888777665443 2234577777777653 33322 26677888888887764 443332 22
Q ss_pred CCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCcc
Q 042327 747 TRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNL 826 (911)
Q Consensus 747 ~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 826 (911)
.+++|+.|++++| .+..++.+..+++|+.|++++|. +..+. .+..+++|+.|++++|+..
T Consensus 241 -----~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 241 -----NLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp -----TCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCSSCCC
T ss_pred -----cCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh-------------hhcCCCCCCEEECcCCcCC
Confidence 6778888888887 66677777788888888888763 32221 3556788888888887543
Q ss_pred CccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcc
Q 042327 827 RSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGD 870 (911)
Q Consensus 827 ~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~ 870 (911)
...+..+..+++|+.|++++|+ ++.+|. ...++.|..++..
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEESSS
T ss_pred CcChhHhhccccCCEEEccCCc-cccccC--hhhhhccceeehh
Confidence 3333345567888888888875 555433 1224455555444
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.5e-24 Score=236.15 Aligned_cols=298 Identities=18% Similarity=0.216 Sum_probs=241.4
Q ss_pred cEEEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 494 NFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
..+...+..+..++.+..++++++|++++|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.++.
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~ 124 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISD 124 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCC
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccC
Confidence 34555666777778888899999999999999998889999999999999999988753 8899999999999999999
Q ss_pred cCccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccccccc
Q 042327 574 FPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSI 653 (911)
Q Consensus 574 lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 653 (911)
+|. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++++|.....
T Consensus 125 ~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~-------- 192 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDI-------- 192 (347)
T ss_dssp CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCC--------
T ss_pred chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccccc--------
Confidence 886 89999999999999955544446899999999999999 5666766 88999999999999854321
Q ss_pred ccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCc
Q 042327 654 LFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKL 733 (911)
Q Consensus 654 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 733 (911)
..+..+++|+.|+++.|.+..... ...++.++.|+++++. ++..+ .+..+++|+.|++++| .+
T Consensus 193 ---------~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l 255 (347)
T 4fmz_A 193 ---------SPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNK-ITDLS--PLANLSQLTWLEIGTN-QI 255 (347)
T ss_dssp ---------GGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSS-CC
T ss_pred ---------ccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCc-cCCCc--chhcCCCCCEEECCCC-cc
Confidence 127788999999999888766544 2345789999998864 34443 2778899999999987 45
Q ss_pred cceeeccccccccCCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCccc
Q 042327 734 EELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFA 813 (911)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 813 (911)
..+ .... .+++|+.|++++| .+..++.+..+++|+.|++++|......+. .+..++
T Consensus 256 ~~~--~~~~---------~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~l~~l~ 311 (347)
T 4fmz_A 256 SDI--NAVK---------DLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME------------VIGGLT 311 (347)
T ss_dssp CCC--GGGT---------TCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH------------HHHTCT
T ss_pred CCC--hhHh---------cCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh------------Hhhccc
Confidence 543 2222 6899999999999 788888899999999999999865433322 456789
Q ss_pred ccceeccCCCCccCccCCCCCCCCCccEEeeCCCC
Q 042327 814 KLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCF 848 (911)
Q Consensus 814 ~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~ 848 (911)
+|+.|++++|+ +..++. ...+++|+.|++++|+
T Consensus 312 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 312 NLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 99999999987 555544 6779999999999975
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.2e-23 Score=240.10 Aligned_cols=354 Identities=18% Similarity=0.152 Sum_probs=251.3
Q ss_pred EEEEeCCccccCCCccccccceEeecccccccccC--CCCCCCCccEEEccCCCCC-CcChhHHhcCCcccEEEccCCCC
Q 042327 495 FLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESL-KIPNDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i 571 (911)
.+...+.+++.+|. -.+++++|++++|.+..++ .+.++++|++|++++|.+. .+++..|.++++|++|+|++|.+
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 35556667777776 3379999999999998873 3889999999999999875 67777799999999999999999
Q ss_pred ccc-CccccCCCCCCEEeecCCCCcc-cccc--ccCCccccEEecccccccccc-ChhhhcCCccccEEEcccccccccc
Q 042327 572 KSF-PLGISKLVSLQQLDLSYSSIKE-LPRE--LYALVNLKCLNLEHAEELITI-PQQVISNFSRLHVLRMYGTVSLNFL 646 (911)
Q Consensus 572 ~~l-p~~i~~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~~~~ 646 (911)
+.+ |..++++++|++|++++|.++. +|.. +.++++|++|++++|. +..+ |...+.++++|++|++++|......
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccC
Confidence 966 7889999999999999999985 4544 8889999999999995 4555 6555789999999999998644221
Q ss_pred cc---------cccccccCC----------chhHHHhhcCCCCCceEEEEEcchhhHHH-HHhhccccccceeeEecccC
Q 042327 647 ES---------LKDSILFGG----------EEVLAEELLGLESLEVLTFTLRSVRALQL-ILISHKLRSCTQALFLQSFN 706 (911)
Q Consensus 647 ~~---------~~~~~~~~~----------~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-l~~~~~~~~~l~~L~l~~~~ 706 (911)
.. +......+. .......+..+++|+.|+++.|.+..... ..........++.|.+.++.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 00 000000000 00111223355788899998887654222 11111123678888887753
Q ss_pred CCCc---------cccCChhc--ccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc--cc
Q 042327 707 DSTS---------LDVSPLAD--LKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT--FL 773 (911)
Q Consensus 707 ~~~~---------~~~~~l~~--l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l 773 (911)
.... .....+.. .++|+.|+++++. +..+.+.... .+++|+.|+|++| .+..++ .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~ 319 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFS---------HFTDLEQLTLAQN-EINKIDDNAF 319 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTT---------TCTTCCEEECTTS-CCCEECTTTT
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcc---------cCCCCCEEECCCC-cccccChhHh
Confidence 2211 11112222 3689999998864 5544444443 7899999999999 555543 57
Q ss_pred ccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCcc-CCCCCCCCCccEEeeCCCCCCCC
Q 042327 774 VFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSI-YWKPLSLPQLKEMKVDGCFGLKK 852 (911)
Q Consensus 774 ~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i-~~~~~~~~~L~~L~l~~C~~L~~ 852 (911)
..+++|+.|+|++|.. +.++. ..+..+++|+.|+|++|. +..+ +..+..+++|++|++++| +++.
T Consensus 320 ~~l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 385 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFL-GSIDS-----------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKS 385 (455)
T ss_dssp TTCTTCCEEECCSSCC-CEECG-----------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred cCcccCCEEECCCCcc-CCcCh-----------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-cccc
Confidence 8899999999999754 33321 146778999999999975 4554 556788999999999994 7888
Q ss_pred CCCCCCCCCCcceEEEcccccccc
Q 042327 853 LPLKCNSAQEQTIVVHGDKTWWIN 876 (911)
Q Consensus 853 lP~~~~~~l~~L~~~~~~~~~~~~ 876 (911)
+|......++.|+.++...+-|.+
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCHhHhccCCcccEEEccCCCccc
Confidence 888766667788888776665544
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=239.90 Aligned_cols=306 Identities=23% Similarity=0.277 Sum_probs=187.5
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
+...+..+..+|. .-.++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.++.
T Consensus 16 v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 16 VLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp EECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 4444555655554 22357888888888887763 37788888888888888888877778888888888888888887
Q ss_pred cCcc-ccCCCCCCEEeecCCCCccc-cccccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccccc
Q 042327 574 FPLG-ISKLVSLQQLDLSYSSIKEL-PRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKD 651 (911)
Q Consensus 574 lp~~-i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 651 (911)
+|.. ++++++|++|+|++|.++.+ |..+.++++|++|++++| .+..++...+.++++|++|++++|....+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------ 167 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSI------ 167 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSC------
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCccc------
Confidence 7654 67888888888888888865 456777888888888887 45556554578888888888887743321
Q ss_pred ccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccC
Q 042327 652 SILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCR 731 (911)
Q Consensus 652 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 731 (911)
....+..+++|+.|+++.|.+..+ ....+..+++|+.|++++|.
T Consensus 168 ---------~~~~l~~l~~L~~L~l~~n~i~~~---------------------------~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 168 ---------PTEALSHLHGLIVLRLRHLNINAI---------------------------RDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp ---------CHHHHTTCTTCCEEEEESCCCCEE---------------------------CTTCSCSCTTCCEEEEECCT
T ss_pred ---------ChhHhcccCCCcEEeCCCCcCcEe---------------------------ChhhcccCcccceeeCCCCc
Confidence 234567778888888876554332 22234445556666666555
Q ss_pred CccceeeccccccccCCCCCccCcccEEEeeccccccccc--ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCC
Q 042327 732 KLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNL 809 (911)
Q Consensus 732 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~ 809 (911)
.+..++.... ...+|+.|+|++| .++.++ .+..+++|+.|+|++|. +..++. ..+
T Consensus 212 ~~~~~~~~~~----------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~ 268 (477)
T 2id5_A 212 YLDTMTPNCL----------YGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-----------SML 268 (477)
T ss_dssp TCCEECTTTT----------TTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-----------TSC
T ss_pred cccccCcccc----------cCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-----------hhc
Confidence 4443332221 2335666666655 444444 24555666666666543 222211 134
Q ss_pred CcccccceeccCCCCccCcc-CCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcc
Q 042327 810 NPFAKLHYLGLVNLPNLRSI-YWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGD 870 (911)
Q Consensus 810 ~~~~~L~~L~L~~~~~L~~i-~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~ 870 (911)
..+++|+.|+|+++. +..+ +..+..+++|+.|++++| +++.+|......+.+|+.++..
T Consensus 269 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 269 HELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC
T ss_pred cccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc
Confidence 455566666666543 3332 334445566666666653 5555554433334444444433
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.5e-23 Score=248.47 Aligned_cols=146 Identities=25% Similarity=0.246 Sum_probs=112.5
Q ss_pred EEEEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc
Q 042327 495 FLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK 572 (911)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 572 (911)
.+...+.+++.+|. .-.+++++|++++|.+..++. +.++++|++|++++|.+..+++..|.++++|++|+|++|.++
T Consensus 15 ~~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 15 TYQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp EEECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ceEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence 34455666666665 223688888888888887744 778888888888888888887777888888888888888888
Q ss_pred cc-CccccCCCCCCEEeecCCCCcccc-ccccCCccccEEecccccccc-ccChhhhcCCccccEEEcccccc
Q 042327 573 SF-PLGISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELI-TIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 573 ~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
.+ |..++++++|++|++++|.++.+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|..
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcc
Confidence 76 777888888888888888888776 567888888888888884322 45665 78888888888888754
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2e-23 Score=238.32 Aligned_cols=334 Identities=17% Similarity=0.243 Sum_probs=202.1
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP 575 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 575 (911)
+...+..+..++.+..++++++|++++|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+|
T Consensus 51 L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred EecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh
Confidence 344455666677777888999999999988888778889999999999998888776 788999999999999888887
Q ss_pred ccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccc-----cccc
Q 042327 576 LGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFL-----ESLK 650 (911)
Q Consensus 576 ~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~-----~~~~ 650 (911)
. ++++++|++|++++|.++.+| .+..+++|++|++++ .+..++. +.++++|++|++++|...... ..+.
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 202 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLE 202 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred H-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCCChhhccCCCCC
Confidence 5 888999999999998888776 467777777777753 2344443 677777777777776432110 0000
Q ss_pred cccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEccc
Q 042327 651 DSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGC 730 (911)
Q Consensus 651 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 730 (911)
.....+........++.+++|+.|+++.|.+..+.. ...+++++.|+++++. ++... .+..+++|+.|+++++
T Consensus 203 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQ-ISNLA--PLSGLTKLTELKLGAN 275 (466)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSS
T ss_pred EEEecCCcccccccccccCCCCEEECCCCCcccchh----hhcCCCCCEEECCCCc-cccch--hhhcCCCCCEEECCCC
Confidence 000000000001113344445555554444433221 1123344555554432 11111 1344455555555543
Q ss_pred CCccceeeccccccccCCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCC
Q 042327 731 RKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLN 810 (911)
Q Consensus 731 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~ 810 (911)
. +..+++ ...+++|+.|+|++| .+..++.++.+++|+.|+|++|... .+. .+.
T Consensus 276 ~-l~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~l~-~~~-------------~~~ 328 (466)
T 1o6v_A 276 Q-ISNISP-----------LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNIS-DIS-------------PVS 328 (466)
T ss_dssp C-CCCCGG-----------GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSCCS-CCG-------------GGG
T ss_pred c-cCcccc-----------ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCcCC-Cch-------------hhc
Confidence 2 222211 115677777777777 5666666777777777777776432 211 245
Q ss_pred cccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcccccccc
Q 042327 811 PFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKTWWIN 876 (911)
Q Consensus 811 ~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~~~~~ 876 (911)
.+++|+.|++++| .+..++ .+..+++|+.|++++|+--...|. ..++.|...+...+-|.+
T Consensus 329 ~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~---~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQISDLTPL---ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCBCGGG---TTCTTCCEEECCCEEEEC
T ss_pred cCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccCccchh---hcCCCCCEEeccCCcccC
Confidence 6777888888776 355543 455678888888887644333342 235556666655555554
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=4.7e-23 Score=242.48 Aligned_cols=143 Identities=25% Similarity=0.286 Sum_probs=86.1
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
+...+.++..+|. .-.+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.++.
T Consensus 12 ~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 12 YQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp EECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc
Confidence 3344444555543 12345666666666666553 35666666666666666666666666666666666666666665
Q ss_pred cC-ccccCCCCCCEEeecCCCCccccc-cccCCccccEEeccccccccc--cChhhhcCCccccEEEccccc
Q 042327 574 FP-LGISKLVSLQQLDLSYSSIKELPR-ELYALVNLKCLNLEHAEELIT--IPQQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 574 lp-~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~ 641 (911)
+| ..++++++|++|++++|+++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCc
Confidence 53 456666666666666666666654 45666666666666663 332 4544 6666666666666653
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.1e-23 Score=232.54 Aligned_cols=306 Identities=16% Similarity=0.169 Sum_probs=239.3
Q ss_pred cccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCE
Q 042327 510 REWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQ 586 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~ 586 (911)
..++++++|++.++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|+|++|.++.+| ..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 346799999999999998877 678999999999999999999888999999999999999999774 55899999999
Q ss_pred EeecCCCCccccccc-cCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhh
Q 042327 587 LDLSYSSIKELPREL-YALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEEL 665 (911)
Q Consensus 587 L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 665 (911)
|++++|.++.+|..+ .++++|++|++++| .+..++...+.++++|++|++++|..... .+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------~~ 182 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV------------------DL 182 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC------------------CG
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc------------------cc
Confidence 999999999999875 78999999999999 56777766689999999999998754321 25
Q ss_pred cCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccc
Q 042327 666 LGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQ 745 (911)
Q Consensus 666 ~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 745 (911)
..+++|+.|+++.|.+..+ .....++.|+++++. ++.++. ..+++|+.|+++++. +... .+..
T Consensus 183 ~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~n~-l~~~--~~l~--- 245 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNS-INVVRG---PVNVELTILKLQHNN-LTDT--AWLL--- 245 (390)
T ss_dssp GGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSC-CCEEEC---CCCSSCCEEECCSSC-CCCC--GGGG---
T ss_pred ccccccceeeccccccccc-------CCCCcceEEECCCCe-eeeccc---cccccccEEECCCCC-Cccc--HHHc---
Confidence 5678899999988776543 234578888888753 333332 234789999998864 4432 2333
Q ss_pred cCCCCCccCcccEEEeecccccccc--cccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCC
Q 042327 746 ATRQPCVFHGLHTVHIEVCLTLKDL--TFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNL 823 (911)
Q Consensus 746 ~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 823 (911)
.+++|+.|+|++| .+..+ ..+..+++|+.|+|++|. ++.++. ....+|+|+.|+|++|
T Consensus 246 ------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 246 ------NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVLDLSHN 305 (390)
T ss_dssp ------GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEEC------------SSSCCTTCCEEECCSS
T ss_pred ------CCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCc------------ccCCCCCCCEEECCCC
Confidence 7899999999999 55554 357889999999999864 333322 4567899999999997
Q ss_pred CccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcccccccc
Q 042327 824 PNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKTWWIN 876 (911)
Q Consensus 824 ~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~~~~~ 876 (911)
.+..++.....+++|+.|++++| .++.+|... ++.|+.++...+-|..
T Consensus 306 -~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~---~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 306 -HLLHVERNQPQFDRLENLYLDHN-SIVTLKLST---HHTLKNLTLSHNDWDC 353 (390)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCT---TCCCSEEECCSSCEEH
T ss_pred -cceecCccccccCcCCEEECCCC-ccceeCchh---hccCCEEEcCCCCccc
Confidence 57778777777899999999996 578887544 4556666666555544
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-23 Score=231.51 Aligned_cols=296 Identities=19% Similarity=0.202 Sum_probs=237.0
Q ss_pred cEEEEeCCccccCCC--ccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCC
Q 042327 494 NFLVYAGVGLTKAPD--VREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRI 569 (911)
Q Consensus 494 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 569 (911)
..+...+..+..+|. +..+++++.|++.+|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|+|++|
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 345555666666665 567899999999999998874 4789999999999999999999988999999999999999
Q ss_pred CCcccCcc-ccCCCCCCEEeecCCCCccccc-cccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccc
Q 042327 570 KLKSFPLG-ISKLVSLQQLDLSYSSIKELPR-ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLE 647 (911)
Q Consensus 570 ~i~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 647 (911)
.++.+|.. ++++++|++|++++|.++.++. .+.++++|++|++++| .+..++ +..+++|++|++++|....
T Consensus 128 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~~--- 200 (390)
T 3o6n_A 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLST--- 200 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCSE---
T ss_pred ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecccccccc---
Confidence 99999877 4899999999999999998754 5888999999999999 566665 5678999999999874321
Q ss_pred ccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEE
Q 042327 648 SLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRV 727 (911)
Q Consensus 648 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 727 (911)
+...++|+.|+++.|.+..++. .....++.|++.++. ++.. ..+..+++|+.|++
T Consensus 201 -----------------~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 201 -----------------LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNN-LTDT--AWLLNYPGLVEVDL 255 (390)
T ss_dssp -----------------EECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSC-CCCC--GGGGGCTTCSEEEC
T ss_pred -----------------cCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCC-Cccc--HHHcCCCCccEEEC
Confidence 2344678999998887765421 334689999998864 3333 46788999999999
Q ss_pred cccCCccceeeccccccccCCCCCccCcccEEEeecccccccccc-cccCCCccEEEEecCcchhHHhccCCCCCccccc
Q 042327 728 FGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTF-LVFAPNLKYAEILNCPAMEEIISAGKFADVPEVM 806 (911)
Q Consensus 728 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~ 806 (911)
+++ .+..+.+.... .+++|+.|+|++| .+..++. ...+++|+.|+|++|. +..++.
T Consensus 256 s~n-~l~~~~~~~~~---------~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----------- 312 (390)
T 3o6n_A 256 SYN-ELEKIMYHPFV---------KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER----------- 312 (390)
T ss_dssp CSS-CCCEEESGGGT---------TCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG-----------
T ss_pred CCC-cCCCcChhHcc---------ccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCc-----------
Confidence 986 46655555544 6899999999999 6776664 5679999999999974 444432
Q ss_pred CCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCC
Q 042327 807 GNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCF 848 (911)
Q Consensus 807 ~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~ 848 (911)
.+..+++|+.|++++++ +..++ ...+++|+.|++++|+
T Consensus 313 -~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 313 -NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred -cccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 45678999999999965 66664 5678999999999964
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=5.1e-23 Score=240.85 Aligned_cols=191 Identities=23% Similarity=0.278 Sum_probs=143.7
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
+...+..++.+|.. -.+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.++.
T Consensus 10 c~~~~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 10 CDGRSRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp EECTTSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred EECCCCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence 44445566666652 2478999999999998873 47899999999999999999988889999999999999999998
Q ss_pred cCcc-ccCCCCCCEEeecCCCCcc--ccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccc
Q 042327 574 FPLG-ISKLVSLQQLDLSYSSIKE--LPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLK 650 (911)
Q Consensus 574 lp~~-i~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 650 (911)
+|.. ++++++|++|++++|.++. .|..++++++|++|++++|..++.+|...+.++++|++|++++|.....
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----- 163 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY----- 163 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-----
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-----
Confidence 7655 9999999999999999984 4677889999999999999767888865589999999999998754321
Q ss_pred cccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecc
Q 042327 651 DSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQS 704 (911)
Q Consensus 651 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~ 704 (911)
.+..+..+++|+.|+++.+....+...... ..+.++.|++++
T Consensus 164 ----------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~ 205 (549)
T 2z81_A 164 ----------QSQSLKSIRDIHHLTLHLSESAFLLEIFAD--ILSSVRYLELRD 205 (549)
T ss_dssp ----------CTTTTTTCSEEEEEEEECSBSTTHHHHHHH--STTTBSEEEEES
T ss_pred ----------ChhhhhccccCceEecccCcccccchhhHh--hcccccEEEccC
Confidence 233455555666666665555444332211 134455555554
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=9.3e-23 Score=236.82 Aligned_cols=142 Identities=23% Similarity=0.289 Sum_probs=116.0
Q ss_pred cEEEEeCCccccCCCccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCC
Q 042327 494 NFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 571 (911)
+.+...+..++.+|... .+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 34555666777776522 279999999999998875 378899999999999999998777799999999999999999
Q ss_pred cccCccccCCCCCCEEeecCCCCcc--ccccccCCccccEEeccccccccccChhhhcCCccc--cEEEcccccc
Q 042327 572 KSFPLGISKLVSLQQLDLSYSSIKE--LPRELYALVNLKCLNLEHAEELITIPQQVISNFSRL--HVLRMYGTVS 642 (911)
Q Consensus 572 ~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 642 (911)
+.+|.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|..
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccc
Confidence 999877 89999999999999985 57889999999999999984 333 226667777 8888877654
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=8.2e-23 Score=233.32 Aligned_cols=300 Identities=17% Similarity=0.205 Sum_probs=207.2
Q ss_pred cccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEee
Q 042327 510 REWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDL 589 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 589 (911)
..+++++.|++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+|. ++++++|++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 3467899999999999999989999999999999999999887 8899999999999999998886 999999999999
Q ss_pred cCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCC
Q 042327 590 SYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLE 669 (911)
Q Consensus 590 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 669 (911)
++|.++.+|. +.++++|++|++++| .+..+|. +.++++|++|++.++.. . ...+..++
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~~-~-----------------~~~~~~l~ 177 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQVT-D-----------------LKPLANLT 177 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESCC-C-----------------CGGGTTCT
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCccc-C-----------------chhhccCC
Confidence 9999999986 899999999999999 5677775 89999999999974311 1 11144455
Q ss_pred CCceEEEEEcchhhHHHHHhhccccccceeeEecccCC---------------------CCccccCChhcccccceEEEc
Q 042327 670 SLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFND---------------------STSLDVSPLADLKHLYRLRVF 728 (911)
Q Consensus 670 ~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~---------------------~~~~~~~~l~~l~~L~~L~l~ 728 (911)
+|+.|+++.|.+..+.. ...+++++.|.++++.- ++.+ ..+..+++|+.|+++
T Consensus 178 ~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 178 TLERLDISSNKVSDISV----LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp TCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECcCCcCCCChh----hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 55555555544433321 11223444444444321 1111 233444555555555
Q ss_pred ccCCccceeeccccccccCCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCC
Q 042327 729 GCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGN 808 (911)
Q Consensus 729 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~ 808 (911)
+|. +..+.+ . ..+++|+.|++++| .+..++.+..+++|+.|++++|.. +.++ .
T Consensus 252 ~n~-l~~~~~--~---------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l-~~~~-------------~ 304 (466)
T 1o6v_A 252 NNQ-ISNLAP--L---------SGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQL-EDIS-------------P 304 (466)
T ss_dssp SSC-CCCCGG--G---------TTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-SCCG-------------G
T ss_pred CCc-cccchh--h---------hcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCcc-cCch-------------h
Confidence 432 222111 1 15667777777776 555555566777777777776542 2211 2
Q ss_pred CCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcccc
Q 042327 809 LNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKT 872 (911)
Q Consensus 809 ~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~ 872 (911)
+..+++|+.|++++|. +..++. ...+++|+.|++++| +++.+|. ...+++|...+...+
T Consensus 305 ~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLSAGHN 363 (466)
T ss_dssp GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-ccCCchh--hccCCCCCEEeCCCC
Confidence 5678899999999875 444433 567899999999997 6776653 224566666665544
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.6e-23 Score=250.06 Aligned_cols=330 Identities=14% Similarity=0.146 Sum_probs=214.7
Q ss_pred CccccccceEeecccccccc------------------cCC-CC--CCCCccEEEccCCCCCCcChhHHhcCCcccEEEc
Q 042327 508 DVREWENVRRLSLMQNEITN------------------LKE-IP--TCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNL 566 (911)
Q Consensus 508 ~~~~~~~l~~L~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 566 (911)
.+..+++|+.|+|++|.+.+ +|. +. ++++|++|++++|.+....+..|.++++|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 46677888888888888877 655 44 7888888888888744333345778888888888
Q ss_pred cCCC-Ccc--cCccccCCC-------CCCEEeecCCCCccccc--cccCCccccEEeccccccccccChhhhcCCccccE
Q 042327 567 SRIK-LKS--FPLGISKLV-------SLQQLDLSYSSIKELPR--ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHV 634 (911)
Q Consensus 567 ~~~~-i~~--lp~~i~~l~-------~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 634 (911)
++|. ++. +|..++++. +|++|+|++|.++.+|. .++++++|++|++++| .+..+| . ++++++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceE
Confidence 8887 774 777666655 88888888888888887 7888888888888888 455788 3 788888888
Q ss_pred EEcccccccccccccccccccCCchhHHHhhcCCCC-CceEEEEEcchhhHHHHHhh-----------------------
Q 042327 635 LRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLES-LEVLTFTLRSVRALQLILIS----------------------- 690 (911)
Q Consensus 635 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~l~~~----------------------- 690 (911)
|++++|.... .+..+..+++ |+.|+++.|.+..++.....
T Consensus 600 L~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 600 LKLDYNQIEE----------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp EECCSSCCSC----------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred EECcCCcccc----------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 8888875432 1222444444 55555555444322210000
Q ss_pred ---cc--ccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccc
Q 042327 691 ---HK--LRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCL 765 (911)
Q Consensus 691 ---~~--~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 765 (911)
.. ...+++.|+++++. ++.++...+..+++|+.|+++++ .+..++...... ..+....+++|+.|+|++|
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~--~~~~l~nl~~L~~L~Ls~N- 738 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKP--KDGNYKNTYLLTTIDLRFN- 738 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSC--TTSCCTTGGGCCEEECCSS-
T ss_pred hhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhcc--ccccccccCCccEEECCCC-
Confidence 00 01244555555432 22333222334566666666654 344333322210 0000113448999999998
Q ss_pred ccccccc-cc--cCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCC------CCccCccCCCCCCC
Q 042327 766 TLKDLTF-LV--FAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVN------LPNLRSIYWKPLSL 836 (911)
Q Consensus 766 ~l~~l~~-l~--~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~L~~i~~~~~~~ 836 (911)
.+..+|. +. .+++|+.|+|++|... .++. .+..+++|+.|+|++ +.....+|..+..+
T Consensus 739 ~L~~lp~~l~~~~l~~L~~L~Ls~N~L~-~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 739 KLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CCCCCCGGGSTTTCTTCCEEECCSSCCS-SCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccchHHhhhccCCCcCEEEeCCCCCC-ccch------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 6667764 54 7899999999986542 2322 566889999999977 44456677778889
Q ss_pred CCccEEeeCCCCCCCCCCCCCCCCCCcceEEEccccccccce
Q 042327 837 PQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKTWWINLK 878 (911)
Q Consensus 837 ~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~~~~~l~ 878 (911)
++|+.|++++|. ++.+|.... +.|..++...+-+..+.
T Consensus 806 ~~L~~L~Ls~N~-L~~Ip~~l~---~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 806 PSLIQLQIGSND-IRKVDEKLT---PQLYILDIADNPNISID 843 (876)
T ss_dssp SSCCEEECCSSC-CCBCCSCCC---SSSCEEECCSCTTCEEE
T ss_pred CCCCEEECCCCC-CCccCHhhc---CCCCEEECCCCCCCccC
Confidence 999999999975 488998764 46667777766665554
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.4e-23 Score=246.68 Aligned_cols=363 Identities=17% Similarity=0.140 Sum_probs=210.6
Q ss_pred EEEeCCccccCC--CccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCC
Q 042327 496 LVYAGVGLTKAP--DVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 496 ~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 571 (911)
+...++.+..++ .+..+++|++|++++|.+..++. +.++++|++|++++|.+..+++..|.++++|++|++++|.+
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 334444444433 46677788888888888777632 67788888888888888777666678888888888888888
Q ss_pred cccC-ccccCCCCCCEEeecCCCCc--cccccccCCccccEEeccccccccccChhhhcCCc------------------
Q 042327 572 KSFP-LGISKLVSLQQLDLSYSSIK--ELPRELYALVNLKCLNLEHAEELITIPQQVISNFS------------------ 630 (911)
Q Consensus 572 ~~lp-~~i~~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~------------------ 630 (911)
+.+| ..++++++|++|++++|.++ .+|..++++++|++|++++| .+..++...++.++
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccCCCcce
Confidence 7665 66788888888888888777 46777888888888888877 33444332233222
Q ss_pred ---------cccEEEcccccccc---------------------------------------------------------
Q 042327 631 ---------RLHVLRMYGTVSLN--------------------------------------------------------- 644 (911)
Q Consensus 631 ---------~L~~L~l~~~~~~~--------------------------------------------------------- 644 (911)
+|++|++++|....
T Consensus 196 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 275 (606)
T 3vq2_A 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275 (606)
T ss_dssp ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccc
Confidence 34444444432110
Q ss_pred ----------------------------------------------cc----cccccccccCCchhHHHhhcCCCCCceE
Q 042327 645 ----------------------------------------------FL----ESLKDSILFGGEEVLAEELLGLESLEVL 674 (911)
Q Consensus 645 ----------------------------------------------~~----~~~~~~~~~~~~~~~~~~l~~l~~L~~L 674 (911)
+. ..+....+.+........+..+++|+.|
T Consensus 276 ~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 276 DDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp GGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred ccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEE
Confidence 00 0000000000000001134466788889
Q ss_pred EEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceee-cccc-----------
Q 042327 675 TFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKM-DYKR----------- 742 (911)
Q Consensus 675 ~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~----------- 742 (911)
+++.|.+.............+.++.|+++++. ++.++ ..+..+++|+.|+++++. +..+.+ ....
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS-ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC-CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECT
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch-hhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECc
Confidence 88887765431000111224567777776653 23332 345556666666665542 111111 1111
Q ss_pred ---ccc-cCCCCCccCcccEEEeeccccccc-cc-ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccc
Q 042327 743 ---LVQ-ATRQPCVFHGLHTVHIEVCLTLKD-LT-FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLH 816 (911)
Q Consensus 743 ---~~~-~~~~~~~l~~L~~L~L~~c~~l~~-l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~ 816 (911)
... .+.....+++|+.|+|++|..... ++ .++.+++|+.|+|++|... .++ ...+..+++|+
T Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-----------~~~~~~l~~L~ 500 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QIS-----------WGVFDTLHRLQ 500 (606)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EEC-----------TTTTTTCTTCC
T ss_pred CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC-ccC-----------hhhhcccccCC
Confidence 000 011112456666666666632221 22 3566666777777665332 221 12567889999
Q ss_pred eeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCC-cceEEEcccccccc
Q 042327 817 YLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQE-QTIVVHGDKTWWIN 876 (911)
Q Consensus 817 ~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~-~L~~~~~~~~~~~~ 876 (911)
.|+|++|......+..+..+++|+.|++++| .++.+|..... +. .|..++...+.|.+
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~-l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQH-FPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGG-SCTTCCEEECCSCCCCC
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhh-hcccCcEEEccCCCccc
Confidence 9999997644444667788999999999997 58889887432 33 47777766665554
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=9e-24 Score=250.15 Aligned_cols=347 Identities=12% Similarity=0.098 Sum_probs=187.5
Q ss_pred ccccccceEeecccccccc------------------cCC-CC--CCCCccEEEccCCCCCCcChhHHhcCCcccEEEcc
Q 042327 509 VREWENVRRLSLMQNEITN------------------LKE-IP--TCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLS 567 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 567 (911)
+..+++|++|++++|.+.+ +|. +. ++++|++|++++|.+....+..+.++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4445555555555555555 433 34 55555555555554332222334555555555555
Q ss_pred CCC-Ccc--cCccccCC------CCCCEEeecCCCCccccc--cccCCccccEEeccccccccccChhhhcCCccccEEE
Q 042327 568 RIK-LKS--FPLGISKL------VSLQQLDLSYSSIKELPR--ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLR 636 (911)
Q Consensus 568 ~~~-i~~--lp~~i~~l------~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 636 (911)
+|. ++. +|..++++ ++|++|++++|+++.+|. .++++++|++|++++|...+.+| . ++++++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence 554 542 55555444 555555555555555555 55555555555555553222555 2 55555555555
Q ss_pred cccccccccccc-------cccccccCC-chhHHHhhcCC--CCCceEEEEEcchhhHHH--HH---hhccccccceeeE
Q 042327 637 MYGTVSLNFLES-------LKDSILFGG-EEVLAEELLGL--ESLEVLTFTLRSVRALQL--IL---ISHKLRSCTQALF 701 (911)
Q Consensus 637 l~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~l~~l--~~L~~L~l~~~~~~~l~~--l~---~~~~~~~~l~~L~ 701 (911)
+++|....+... +....+.++ -...+..+..+ ++|+.|+++.|.+..... +. ...-...+++.|+
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 555432211000 000000000 00011122222 256666666655543211 00 0000123566666
Q ss_pred ecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeecccccccccc-cc--cCCC
Q 042327 702 LQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTF-LV--FAPN 778 (911)
Q Consensus 702 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~--~l~~ 778 (911)
++++. ++.++...+..+++|+.|+++++. +..++....... ......+++|+.|+|++| .+..+|. +. .+++
T Consensus 440 Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 440 LSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDE--NENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPY 514 (636)
T ss_dssp CCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEET--TEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTT
T ss_pred CcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccc--cccccccCCccEEECcCC-cCCccChhhhhccCCC
Confidence 66643 334443334456777777777653 444443332200 000002338999999998 5667764 54 8899
Q ss_pred ccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCC------CCccCccCCCCCCCCCccEEeeCCCCCCCC
Q 042327 779 LKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVN------LPNLRSIYWKPLSLPQLKEMKVDGCFGLKK 852 (911)
Q Consensus 779 L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~ 852 (911)
|+.|+|++|... .++. .+..+++|+.|+|++ +.....+|..+..+++|+.|++++|. ++.
T Consensus 515 L~~L~Ls~N~l~-~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ 580 (636)
T 4eco_A 515 LVGIDLSYNSFS-KFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRK 580 (636)
T ss_dssp CCEEECCSSCCS-SCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCB
T ss_pred cCEEECCCCCCC-CcCh------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCc
Confidence 999999986543 2322 566789999999954 44566777788889999999999975 588
Q ss_pred CCCCCCCCCCcceEEEcccccccccee
Q 042327 853 LPLKCNSAQEQTIVVHGDKTWWINLKW 879 (911)
Q Consensus 853 lP~~~~~~l~~L~~~~~~~~~~~~l~~ 879 (911)
+|.... +.|..++...+-+..+..
T Consensus 581 ip~~~~---~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 581 VNEKIT---PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCSCCC---TTCCEEECCSCTTCEEEC
T ss_pred cCHhHh---CcCCEEECcCCCCccccH
Confidence 998754 567777777776766553
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=2.1e-22 Score=238.68 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=70.2
Q ss_pred ccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCC
Q 042327 509 VREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQ 585 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~ 585 (911)
+..+++|++|++++|.+..+. .+.++++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++++++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 444555555555555554442 245555555555555555555444455555555555555555544 44455555555
Q ss_pred EEeecCCCCcccc-ccccCCccccEEeccccccccccChhhhcCCcccc--EEEccccc
Q 042327 586 QLDLSYSSIKELP-RELYALVNLKCLNLEHAEELITIPQQVISNFSRLH--VLRMYGTV 641 (911)
Q Consensus 586 ~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~--~L~l~~~~ 641 (911)
+|++++|.++.++ ..+..+++|++|++++| .+..++...++.+++|+ +|++++|.
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCc
Confidence 5555555555442 22233556666666555 34444444455566665 55555543
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=5.1e-22 Score=232.56 Aligned_cols=363 Identities=18% Similarity=0.149 Sum_probs=220.6
Q ss_pred ccEEEEeCCccccCCCccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCC
Q 042327 493 ENFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIK 570 (911)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 570 (911)
...+...+..++.+|.. -.+++++|++++|.+..++ .+..+++|++|++++|.+..++++.|.++++|++|+|++|.
T Consensus 33 ~~~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CCEEECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcEEEcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 34566677777777752 2379999999999999885 48999999999999999999988889999999999999999
Q ss_pred CcccCccccCCCCCCEEeecCCCCcccc--ccccCCccccEEeccccccccccChhhhcCCccc--cEEEcccccc--cc
Q 042327 571 LKSFPLGISKLVSLQQLDLSYSSIKELP--RELYALVNLKCLNLEHAEELITIPQQVISNFSRL--HVLRMYGTVS--LN 644 (911)
Q Consensus 571 i~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~--~~ 644 (911)
++.+|.. .+++|++|++++|.++.+| ..++++++|++|++++|. +...+ +..+++| ++|++++|.. ..
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCCCS
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccccccc
Confidence 9999977 8999999999999999765 789999999999999984 44432 5556666 9999998754 11
Q ss_pred c-ccccc--------------------------------cccccCC------chhHHHhhcCCCCCceEEEEEcchhhH-
Q 042327 645 F-LESLK--------------------------------DSILFGG------EEVLAEELLGLESLEVLTFTLRSVRAL- 684 (911)
Q Consensus 645 ~-~~~~~--------------------------------~~~~~~~------~~~~~~~l~~l~~L~~L~l~~~~~~~l- 684 (911)
. ..... ......+ .......+..+++|+.|.+..+.+...
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 1 00000 0000000 011233445555555555554433221
Q ss_pred -HHHHhhccccccceeeEecccCCCCcccc--------------------------------------------------
Q 042327 685 -QLILISHKLRSCTQALFLQSFNDSTSLDV-------------------------------------------------- 713 (911)
Q Consensus 685 -~~l~~~~~~~~~l~~L~l~~~~~~~~~~~-------------------------------------------------- 713 (911)
..+.... ....++.|+++++.-...++.
T Consensus 266 ~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 1111100 112444444444321100000
Q ss_pred --CChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc----ccccCCCccEEEEecC
Q 042327 714 --SPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT----FLVFAPNLKYAEILNC 787 (911)
Q Consensus 714 --~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~c 787 (911)
.....+++|+.|+++++. +....+... ..+++|+.|+|++| .++.++ .+..+++|+.|++++|
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~---------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNV-FTDSVFQGC---------STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSC-CCTTTTTTC---------CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred cccCccCCCCceEEECCCCc-cccchhhhh---------cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC
Confidence 000344555666655532 222111111 14555666666555 344332 1445555555555554
Q ss_pred cchhHHhccC--CCCCcccc--------cCCCCcc-cccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCC
Q 042327 788 PAMEEIISAG--KFADVPEV--------MGNLNPF-AKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLK 856 (911)
Q Consensus 788 ~~l~~i~~~~--~~~~~~~~--------~~~~~~~-~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~ 856 (911)
.....++... .+..+..+ ......+ ++|+.|+|++| .++.+|.....+++|+.|++++| +++.+|..
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 3322122110 00000000 0011223 68999999996 68889888779999999999995 78899987
Q ss_pred CCCCCCcceEEEcccccccc
Q 042327 857 CNSAQEQTIVVHGDKTWWIN 876 (911)
Q Consensus 857 ~~~~l~~L~~~~~~~~~~~~ 876 (911)
....++.|..++...+-|.+
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp STTTCTTCCCEECCSCCBCC
T ss_pred HHhcCCCCCEEEecCCCcCC
Confidence 44557777777777666654
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5e-23 Score=242.41 Aligned_cols=303 Identities=16% Similarity=0.176 Sum_probs=198.5
Q ss_pred ccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEE
Q 042327 511 EWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQL 587 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L 587 (911)
.+.+++.+++.+|.+..+|. +..+++|++|++++|.+..+++..|..+++|++|+|++|.++.+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35677888888888877766 5678888888888888888887778888888888888888887654 46888888888
Q ss_pred eecCCCCccccccc-cCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhc
Q 042327 588 DLSYSSIKELPREL-YALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELL 666 (911)
Q Consensus 588 ~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 666 (911)
+|++|.++.+|..+ +++++|++|++++| .+..+++..++++++|++|++++|..... .+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------~~~ 189 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV------------------DLS 189 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC------------------CGG
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc------------------Chh
Confidence 88888888887764 67888888888888 45666655578888888888888743321 144
Q ss_pred CCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeecccccccc
Q 042327 667 GLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQA 746 (911)
Q Consensus 667 ~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 746 (911)
.+++|+.|+++.|.+..+ .....++.|+++++. ++.++.. ..++|+.|+++++. +.. +.+..
T Consensus 190 ~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~-l~~~~~~---~~~~L~~L~L~~n~-l~~--~~~l~---- 251 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNS-INVVRGP---VNVELTILKLQHNN-LTD--TAWLL---- 251 (597)
T ss_dssp GCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSC-CCEEECS---CCSCCCEEECCSSC-CCC--CGGGG----
T ss_pred hhhhhhhhhcccCccccc-------cCCchhheeeccCCc-ccccccc---cCCCCCEEECCCCC-CCC--Chhhc----
Confidence 566777777776655432 223456677766643 3333211 12567777777653 332 22222
Q ss_pred CCCCCccCcccEEEeecccccccc-c-ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCC
Q 042327 747 TRQPCVFHGLHTVHIEVCLTLKDL-T-FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLP 824 (911)
Q Consensus 747 ~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 824 (911)
.+++|+.|+|++| .+..+ | .++.+++|+.|+|++|. +..++. ....+|+|+.|+|++|.
T Consensus 252 -----~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------------~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 252 -----NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp -----GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSC-CCEEEC------------SSSCCTTCCEEECCSSC
T ss_pred -----cCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCC-CCCCCc------------ccccCCCCcEEECCCCC
Confidence 5677777777777 34443 2 46677777777777753 222221 34556777777777753
Q ss_pred ccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcccccc
Q 042327 825 NLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKTWW 874 (911)
Q Consensus 825 ~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~~~ 874 (911)
+..+|.....+++|+.|++++| .+..+|.... +.|..++...+-|
T Consensus 313 -l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~L~~L~l~~N~~ 357 (597)
T 3oja_B 313 -LLHVERNQPQFDRLENLYLDHN-SIVTLKLSTH---HTLKNLTLSHNDW 357 (597)
T ss_dssp -CCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTT---CCCSEEECCSSCE
T ss_pred -CCccCcccccCCCCCEEECCCC-CCCCcChhhc---CCCCEEEeeCCCC
Confidence 5566655566777777777775 4566664433 3444444443333
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=6e-23 Score=232.35 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=73.9
Q ss_pred ccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEe
Q 042327 509 VREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLD 588 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 588 (911)
+..++++++|++++|.+.++|.+..+++|++|++++|.+..+| +..+++|++|++++|.++.+| ++++++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 3445566666666666666655666666666666666665554 455666666666666666554 56666666666
Q ss_pred ecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccc
Q 042327 589 LSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 589 L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
+++|.++.+| ++++++|++|++++| .+..+| ++++++|++|++++|
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCC
Confidence 6666666654 556666666666666 344443 456666666666655
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.3e-23 Score=251.24 Aligned_cols=333 Identities=19% Similarity=0.159 Sum_probs=188.3
Q ss_pred EEEeCCccccCCCccccccceEeecccccccc-cCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc-
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITN-LKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS- 573 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~- 573 (911)
+...++.+........+++|++|++++|.+.. ++.+..+++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus 183 L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 262 (768)
T 3rgz_A 183 LAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262 (768)
T ss_dssp EECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEES
T ss_pred EECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCc
Confidence 33444444444445677888888888888776 3557888888888888888776656667888888888888888773
Q ss_pred cCccccCCCCCCEEeecCCCCc-cccccccCC-ccccEEeccccccccccChhhhcCCccccEEEccccccccccccccc
Q 042327 574 FPLGISKLVSLQQLDLSYSSIK-ELPRELYAL-VNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKD 651 (911)
Q Consensus 574 lp~~i~~l~~L~~L~L~~~~i~-~lp~~~~~l-~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 651 (911)
+|.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++++|.....
T Consensus 263 ~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~------ 333 (768)
T 3rgz_A 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGE------ 333 (768)
T ss_dssp CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEE------
T ss_pred cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCc------
Confidence 3432 6777888888887777 677777664 77888888877544456655 77788888888877643210
Q ss_pred ccccCCchhHHHhhcCCCCCceEEEEEcchh-h----HHHHH--------------------hhccccccceeeEecccC
Q 042327 652 SILFGGEEVLAEELLGLESLEVLTFTLRSVR-A----LQLIL--------------------ISHKLRSCTQALFLQSFN 706 (911)
Q Consensus 652 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~----l~~l~--------------------~~~~~~~~l~~L~l~~~~ 706 (911)
.....+..+++|+.|+++.|.+. . +..+. ......+.++.|++.++.
T Consensus 334 --------ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 334 --------LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp --------CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred --------CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 01122555566666666555442 1 11100 000002234444444432
Q ss_pred CCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc-ccccCCCccEEEEe
Q 042327 707 DSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEIL 785 (911)
Q Consensus 707 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~ 785 (911)
- +......+..+++|+.|+++++. +....+.... .+++|+.|+|++|.....+| .++.+++|+.|+|+
T Consensus 406 l-~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~---------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 406 F-TGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLG---------SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp E-EEECCGGGGGCTTCCEEECCSSE-EESCCCGGGG---------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred c-ccccCHHHhcCCCCCEEECcCCc-ccCcccHHHh---------cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 1 11112344555566666665542 2212222222 45566666666663332333 25556666666666
Q ss_pred cCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcce
Q 042327 786 NCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTI 865 (911)
Q Consensus 786 ~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~ 865 (911)
+|.....++. .+..+++|+.|+|++|.....+|..+..+++|+.|++++|.-...+|.... .++.|.
T Consensus 475 ~N~l~~~~p~------------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~ 541 (768)
T 3rgz_A 475 FNDLTGEIPS------------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLI 541 (768)
T ss_dssp SSCCCSCCCG------------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCC
T ss_pred CCcccCcCCH------------HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCC
Confidence 6543322211 345556666666666554445555555666666666666544334554332 234444
Q ss_pred EEEc
Q 042327 866 VVHG 869 (911)
Q Consensus 866 ~~~~ 869 (911)
..+.
T Consensus 542 ~L~L 545 (768)
T 3rgz_A 542 WLDL 545 (768)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 4443
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.3e-22 Score=240.35 Aligned_cols=338 Identities=17% Similarity=0.101 Sum_probs=159.8
Q ss_pred ccccccceEeeccccccccc--CCCCCCCCccEEEccCCCCCCcChhHHhcCCccc--EEEccCCCCcccC---------
Q 042327 509 VREWENVRRLSLMQNEITNL--KEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLK--VLNLSRIKLKSFP--------- 575 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~L~~~~i~~lp--------- 575 (911)
+..+++|++|++++|.+..+ +.+..+++|++|++++|.+..+++..|..+++|+ .|++++|.++.++
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L 204 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccc
Confidence 45556666666666666654 4444566666666666666666655566666655 5555555444332
Q ss_pred ------------------------------------------------------------------c-cccCCCCCCEEe
Q 042327 576 ------------------------------------------------------------------L-GISKLVSLQQLD 588 (911)
Q Consensus 576 ------------------------------------------------------------------~-~i~~l~~L~~L~ 588 (911)
. .++++++|++|+
T Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 1 244555666666
Q ss_pred ecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCC
Q 042327 589 LSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGL 668 (911)
Q Consensus 589 L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 668 (911)
+++|.++.+|..+.++++|++|++++| .+..+++..+.++++|++|++++|.... ......+..+
T Consensus 285 l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~--------------~~~~~~~~~l 349 (606)
T 3t6q_A 285 LTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRL--------------ELGTGCLENL 349 (606)
T ss_dssp CTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCC--------------BCCSSTTTTC
T ss_pred ccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccc--------------ccchhhhhcc
Confidence 666666666666666666666666665 3344433335566666666665553210 0011124445
Q ss_pred CCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeecccc------
Q 042327 669 ESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKR------ 742 (911)
Q Consensus 669 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~------ 742 (911)
++|+.|+++.|.+.............+.++.|+++++. +.......+..+++|+.|+++++......+.....
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 55555555555443321101111223445555555432 22222234444555555555443211100111111
Q ss_pred --------cccc-CCCCCccCcccEEEeeccccccc-c---cccccCCCccEEEEecCcchhHHhccCCCCCcccccCCC
Q 042327 743 --------LVQA-TRQPCVFHGLHTVHIEVCLTLKD-L---TFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNL 809 (911)
Q Consensus 743 --------~~~~-~~~~~~l~~L~~L~L~~c~~l~~-l---~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~ 809 (911)
.... +.....+++|+.|+|++|..... + ..+..+++|+.|+|++|... .++ ...+
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-----------~~~~ 496 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SID-----------QHAF 496 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-EEC-----------TTTT
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC-ccC-----------hhhh
Confidence 0000 00011344555555555422110 1 12444555555555554221 111 0135
Q ss_pred CcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcccccccc
Q 042327 810 NPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKTWWIN 876 (911)
Q Consensus 810 ~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~~~~~ 876 (911)
..+++|+.|+|+++.-....+..+..+++| .|++++| +++.+|......+..|..++...+.|.+
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCccc
Confidence 556667777776654333334445556666 6777664 4444443322234455555555555543
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-22 Score=238.31 Aligned_cols=296 Identities=19% Similarity=0.196 Sum_probs=238.1
Q ss_pred cEEEEeCCccccCCC--ccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCC
Q 042327 494 NFLVYAGVGLTKAPD--VREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRI 569 (911)
Q Consensus 494 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 569 (911)
..+...+..+..+|. +..+++|+.|++++|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|+|++|
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 445555666666664 567889999999999998875 4889999999999999999999998999999999999999
Q ss_pred CCcccCcc-ccCCCCCCEEeecCCCCccccc-cccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccc
Q 042327 570 KLKSFPLG-ISKLVSLQQLDLSYSSIKELPR-ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLE 647 (911)
Q Consensus 570 ~i~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 647 (911)
.++.+|.. ++++++|++|+|++|.++.+|. .++++++|++|++++| .+..++ ++.+++|++|++++|...
T Consensus 134 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~---- 205 (597)
T 3oja_B 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLS---- 205 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCS----
T ss_pred CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCccc----
Confidence 99999876 5899999999999999997765 5889999999999999 567776 567899999999987432
Q ss_pred ccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEE
Q 042327 648 SLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRV 727 (911)
Q Consensus 648 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 727 (911)
.+....+|+.|+++.|.+..+.. .....++.|.++++. ++.. ..+..+++|+.|++
T Consensus 206 ----------------~l~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~-l~~~--~~l~~l~~L~~L~L 261 (597)
T 3oja_B 206 ----------------TLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNN-LTDT--AWLLNYPGLVEVDL 261 (597)
T ss_dssp ----------------EEECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSC-CCCC--GGGGGCTTCSEEEC
T ss_pred ----------------cccCCchhheeeccCCccccccc-----ccCCCCCEEECCCCC-CCCC--hhhccCCCCCEEEC
Confidence 13345679999999887765432 234689999998864 3332 56788999999999
Q ss_pred cccCCccceeeccccccccCCCCCccCcccEEEeecccccccccc-cccCCCccEEEEecCcchhHHhccCCCCCccccc
Q 042327 728 FGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTF-LVFAPNLKYAEILNCPAMEEIISAGKFADVPEVM 806 (911)
Q Consensus 728 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~ 806 (911)
+++. +..+.+.... .+++|+.|+|++| .+..++. +..+|+|+.|+|++|.. ..++.
T Consensus 262 s~N~-l~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~----------- 318 (597)
T 3oja_B 262 SYNE-LEKIMYHPFV---------KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVER----------- 318 (597)
T ss_dssp CSSC-CCEEESGGGT---------TCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCC-CCCGG-----------
T ss_pred CCCc-cCCCCHHHhc---------CccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCC-CccCc-----------
Confidence 9864 6655555544 7899999999999 6777664 56799999999999754 34432
Q ss_pred CCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCC
Q 042327 807 GNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCF 848 (911)
Q Consensus 807 ~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~ 848 (911)
.+..+++|+.|+|++|+ +..++ ...+++|+.|++++|+
T Consensus 319 -~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 319 -NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred -ccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 45678999999999965 56554 6678999999999975
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=4.8e-22 Score=224.96 Aligned_cols=310 Identities=17% Similarity=0.168 Sum_probs=228.6
Q ss_pred cEEEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 494 NFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
..+...+..+..+|.+..++++++|++++|.+..++ +..+++|++|++++|.+..++ +..+++|++|++++|.++.
T Consensus 45 ~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSC
T ss_pred CEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCe
Confidence 345556667777778888999999999999999985 889999999999999998885 7889999999999999998
Q ss_pred cCccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccccccc
Q 042327 574 FPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSI 653 (911)
Q Consensus 574 lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 653 (911)
+| ++.+++|++|++++|.++.+| ++++++|++|++++|..++.++ +..+++|++|++++|....+
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-------- 185 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-------- 185 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC--------
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee--------
Confidence 86 899999999999999999985 8899999999999997777774 78999999999999854321
Q ss_pred ccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCc
Q 042327 654 LFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKL 733 (911)
Q Consensus 654 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 733 (911)
.+..+++|+.|+++.|.+..+. ...++.++.|+++++. ++.++ +..+++|+.|+++++ .+
T Consensus 186 ----------~l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N-~l 245 (457)
T 3bz5_A 186 ----------DVSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNK-LTEID---VTPLTQLTYFDCSVN-PL 245 (457)
T ss_dssp ----------CCTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSS-CC
T ss_pred ----------ccccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCc-ccccC---ccccCCCCEEEeeCC-cC
Confidence 1667888999999988877652 2345788888888753 44443 667889999999876 35
Q ss_pred cceeeccccccccCCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCccc
Q 042327 734 EELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFA 813 (911)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 813 (911)
+.+++.... ..........+|+.|++++|..+..+| .+.+++|+.|++++|..++.++... ..+..+ .+..++
T Consensus 246 ~~~~~~~l~--~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~--~~L~~L--~l~~~~ 318 (457)
T 3bz5_A 246 TELDVSTLS--KLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA--AGITEL--DLSQNP 318 (457)
T ss_dssp SCCCCTTCT--TCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT--CCCSCC--CCTTCT
T ss_pred CCcCHHHCC--CCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC--CcceEe--chhhcc
Confidence 544322111 000000012245556666665555554 5678899999999988777665311 111111 356678
Q ss_pred ccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCC
Q 042327 814 KLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKL 853 (911)
Q Consensus 814 ~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~l 853 (911)
+|+.|+++++ .++.++ ...+++|+.|++++ ++++.+
T Consensus 319 ~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 319 KLVYLYLNNT-ELTELD--VSHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp TCCEEECTTC-CCSCCC--CTTCTTCSEEECCS-SCCCBC
T ss_pred cCCEEECCCC-cccccc--cccCCcCcEEECCC-CCCCCc
Confidence 8888888874 466653 66788899998887 355544
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=7.4e-22 Score=230.98 Aligned_cols=145 Identities=21% Similarity=0.218 Sum_probs=120.7
Q ss_pred EEEeCCccccC--CCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCC
Q 042327 496 LVYAGVGLTKA--PDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 496 ~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 571 (911)
+...++.+..+ ..+..++++++|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|.+
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 44445555443 357788999999999999988753 88999999999999999999999899999999999999999
Q ss_pred cc--cCccccCCCCCCEEeecCCC-Ccccc-ccccCCccccEEeccccccccccChhhhcCCccccEEEccccc
Q 042327 572 KS--FPLGISKLVSLQQLDLSYSS-IKELP-RELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 572 ~~--lp~~i~~l~~L~~L~L~~~~-i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 641 (911)
+. .|..++++++|++|++++|. +..+| ..+.++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSB
T ss_pred cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCc
Confidence 84 47789999999999999997 67887 47889999999999999544445554 7888888888887764
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=4.5e-22 Score=226.99 Aligned_cols=334 Identities=16% Similarity=0.161 Sum_probs=230.7
Q ss_pred EEEEeCCccccC--CCccccccceEeeccccccc-ccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCC
Q 042327 495 FLVYAGVGLTKA--PDVREWENVRRLSLMQNEIT-NLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRI 569 (911)
Q Consensus 495 ~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 569 (911)
.+...++.+... ..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 344455555543 35778899999999999886 342 3789999999999999998887777999999999999999
Q ss_pred CCcc-cCcc--ccCCCCCCEEeecCCCCccc-ccc-ccCCccccEEeccccccccccChhhhcCC--ccccEEEcccccc
Q 042327 570 KLKS-FPLG--ISKLVSLQQLDLSYSSIKEL-PRE-LYALVNLKCLNLEHAEELITIPQQVISNF--SRLHVLRMYGTVS 642 (911)
Q Consensus 570 ~i~~-lp~~--i~~l~~L~~L~L~~~~i~~l-p~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l--~~L~~L~l~~~~~ 642 (911)
.++. +|.. ++++++|++|++++|.++.+ |.. +.++++|++|++++|. +..++...+..+ .+|+.|++++|..
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l 192 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITL 192 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBC
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcc
Confidence 9985 4444 89999999999999999977 544 7889999999999994 455443335544 3455555554432
Q ss_pred cccc---------------cccccccccCC--chhHHHh---hcCCCCCceEEEEEcchhhH----------HHHHhhcc
Q 042327 643 LNFL---------------ESLKDSILFGG--EEVLAEE---LLGLESLEVLTFTLRSVRAL----------QLILISHK 692 (911)
Q Consensus 643 ~~~~---------------~~~~~~~~~~~--~~~~~~~---l~~l~~L~~L~l~~~~~~~l----------~~l~~~~~ 692 (911)
.... ..+....+.++ ....+.. ....++|+.|+++.+..... ........
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (455)
T 3v47_A 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272 (455)
T ss_dssp TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG
T ss_pred cccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccc
Confidence 2110 01111111111 1122222 33347888888875532210 00000111
Q ss_pred ccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc-
Q 042327 693 LRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT- 771 (911)
Q Consensus 693 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~- 771 (911)
....++.|+++++. ++......+..+++|+.|+++++. +..+.+.... .+++|+.|+|++| .+..++
T Consensus 273 ~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~~~~ 340 (455)
T 3v47_A 273 EASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFW---------GLTHLLKLNLSQN-FLGSIDS 340 (455)
T ss_dssp TTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTT---------TCTTCCEEECCSS-CCCEECG
T ss_pred cccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCc-ccccChhHhc---------CcccCCEEECCCC-ccCCcCh
Confidence 13578889998854 445555678889999999999864 5555554444 6899999999999 566653
Q ss_pred -ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCC-CCCCCCccEEeeCCCCC
Q 042327 772 -FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWK-PLSLPQLKEMKVDGCFG 849 (911)
Q Consensus 772 -~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~l~~C~~ 849 (911)
.++.+++|+.|+|++|.. +.+.. ..+..+++|+.|+|+++ .++.++.. +..+++|+.|++++|+-
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHI-RALGD-----------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp GGGTTCTTCCEEECCSSCC-CEECT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHhcCcccCCEEECCCCcc-cccCh-----------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 478899999999999754 33311 25778999999999995 57777764 46799999999999765
Q ss_pred CCCCC
Q 042327 850 LKKLP 854 (911)
Q Consensus 850 L~~lP 854 (911)
-...|
T Consensus 408 ~~~~~ 412 (455)
T 3v47_A 408 DCSCP 412 (455)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 44444
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3.9e-22 Score=216.97 Aligned_cols=295 Identities=18% Similarity=0.170 Sum_probs=213.8
Q ss_pred ccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecC
Q 042327 513 ENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSY 591 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 591 (911)
.+++.++++++.+..+|... .++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 37889999999888876522 47899999999999999887799999999999999999977 77899999999999999
Q ss_pred CCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCC
Q 042327 592 SSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESL 671 (911)
Q Consensus 592 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 671 (911)
|.++.+|..+. ++|++|++++| .+..+|...+.++++|++|++++|..... ...+..+..+ +|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l-~L 174 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL-KL 174 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC-CC
T ss_pred CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC-cc
Confidence 99999998776 89999999998 57788877789999999999998754310 1123345555 88
Q ss_pred ceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCC
Q 042327 672 EVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPC 751 (911)
Q Consensus 672 ~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 751 (911)
+.|+++.|.+..++. ...+.++.|+++++ .++..+...+..+++|+.|+++++ .+..+.+....
T Consensus 175 ~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~--------- 238 (332)
T 2ft3_A 175 NYLRISEAKLTGIPK-----DLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLS--------- 238 (332)
T ss_dssp SCCBCCSSBCSSCCS-----SSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGG---------
T ss_pred CEEECcCCCCCccCc-----cccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhh---------
Confidence 899998887765332 23357788888774 345555556778888888888875 45555444443
Q ss_pred ccCcccEEEeecccccccccc-cccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCcc--Cc
Q 042327 752 VFHGLHTVHIEVCLTLKDLTF-LVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNL--RS 828 (911)
Q Consensus 752 ~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L--~~ 828 (911)
.+++|+.|+|++| .+..+|. +..+++|+.|++++|. ++.++...... . .....+++|+.|++.+++.. ..
T Consensus 239 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~----~-~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 239 FLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCP----V-GFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp GCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSC----S-SCCSSSCCBSEEECCSSSSCGGGS
T ss_pred CCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHccc----c-ccccccccccceEeecCccccccc
Confidence 6788888998888 5667664 7888888888888854 44432210000 0 01123677888888887643 22
Q ss_pred cCCCCCCCCCccEEeeCCCC
Q 042327 829 IYWKPLSLPQLKEMKVDGCF 848 (911)
Q Consensus 829 i~~~~~~~~~L~~L~l~~C~ 848 (911)
.+..+..+++|+.|++++|.
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 22335567788888888764
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.8e-22 Score=242.78 Aligned_cols=316 Identities=15% Similarity=0.145 Sum_probs=227.7
Q ss_pred ccccceEeecccccccc-cCC-CCCCCCccEEEccCCC-CCC--cChhHHhcC-------CcccEEEccCCCCcccCc--
Q 042327 511 EWENVRRLSLMQNEITN-LKE-IPTCPHLLTLFLDNNE-SLK--IPNDFFQYM-------HSLKVLNLSRIKLKSFPL-- 576 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~-~~~--~~~~~~~~l-------~~L~~L~L~~~~i~~lp~-- 576 (911)
.+++|+.|++++|.+.. +|. +.++++|++|++++|. +.. +|.. +..+ ++|++|+|++|.++.+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 78999999999997654 443 7889999999999997 775 6654 4444 499999999999999998
Q ss_pred cccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCcc-ccEEEcccccccccccc-------
Q 042327 577 GISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSR-LHVLRMYGTVSLNFLES------- 648 (911)
Q Consensus 577 ~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~------- 648 (911)
.++++++|++|+|++|.++.+| .++++++|+.|++++| .+..+|.. +.++++ |++|++++|....+...
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 8999999999999999999999 8899999999999998 46688887 889998 99999999865432211
Q ss_pred -cccccccCCch-hH----HHhhc--CCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChh---
Q 042327 649 -LKDSILFGGEE-VL----AEELL--GLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLA--- 717 (911)
Q Consensus 649 -~~~~~~~~~~~-~~----~~~l~--~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~--- 717 (911)
+....+.++.. .. +..+. .+++|+.|+++.|.+..++.... ..++.++.|+++++ .++.++...+.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~--~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF--ATGSPISTIILSNN-LMTSIPENSLKPKD 721 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH--HTTCCCSEEECCSC-CCSCCCTTSSSCTT
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH--ccCCCCCEEECCCC-cCCccChHHhcccc
Confidence 11111111110 00 11122 33589999999998876554322 13468999999886 34455433322
Q ss_pred ----cccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc-ccccCCCccEEEEecCcchhH
Q 042327 718 ----DLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILNCPAMEE 792 (911)
Q Consensus 718 ----~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~ 792 (911)
++++|+.|+|++| .+..++..... ..+++|+.|+|++| .+..+| .+..+++|+.|+|++|..+..
T Consensus 722 ~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~--------~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFN-KLTSLSDDFRA--------TTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp SCCTTGGGCCEEECCSS-CCCCCCGGGST--------TTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTC
T ss_pred ccccccCCccEEECCCC-CCccchHHhhh--------ccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCccc
Confidence 3459999999987 45555433320 15899999999999 566676 488999999999988552110
Q ss_pred HhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCC
Q 042327 793 IISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKL 853 (911)
Q Consensus 793 i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~l 853 (911)
..... .....+..+++|+.|+|++|.. ..+|.... ++|+.|++++|+ +..+
T Consensus 792 ---N~l~~---~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 792 ---NRILR---QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP-NISI 842 (876)
T ss_dssp ---CBCCC---CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT-TCEE
T ss_pred ---ccccc---cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC-CCcc
Confidence 00001 1122577899999999999764 88887654 799999999986 4443
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.2e-21 Score=212.86 Aligned_cols=295 Identities=17% Similarity=0.166 Sum_probs=200.0
Q ss_pred ccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecC
Q 042327 513 ENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSY 591 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 591 (911)
.+++.+++.++.+..+|.. -.++|++|++++|.+..+++..|..+++|++|+|++|.++.+ |..++++++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4788999999888887652 237899999999999999988899999999999999999977 88899999999999999
Q ss_pred CCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCC
Q 042327 592 SSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESL 671 (911)
Q Consensus 592 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 671 (911)
|.++.+|..+. ++|++|++++| .+..++...+.++++|++|++++|.... .......+..+++|
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKKL 173 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTTC
T ss_pred CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCCc
Confidence 99999998776 79999999998 6778888779999999999999875431 11234567788999
Q ss_pred ceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCC
Q 042327 672 EVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPC 751 (911)
Q Consensus 672 ~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 751 (911)
+.|+++.|.+..++. ...+.++.|+++++. ++......+..+++|+.|+++++. +..+.+....
T Consensus 174 ~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~--------- 237 (330)
T 1xku_A 174 SYIRIADTNITTIPQ-----GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLA--------- 237 (330)
T ss_dssp CEEECCSSCCCSCCS-----SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGG---------
T ss_pred CEEECCCCccccCCc-----cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeChhhcc---------
Confidence 999998777654321 222566667666643 444444456666777777776643 4444333332
Q ss_pred ccCcccEEEeeccccccccc-ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccC--c
Q 042327 752 VFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLR--S 828 (911)
Q Consensus 752 ~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~--~ 828 (911)
.+++|+.|+|++| .+..+| .+..+++|+.|+|++|. ++.++...... ......++.|+.|++.+++... .
T Consensus 238 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~-----~~~~~~~~~l~~l~l~~N~~~~~~i 310 (330)
T 1xku_A 238 NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCP-----PGYNTKKASYSGVSLFSNPVQYWEI 310 (330)
T ss_dssp GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSC-----SSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCC-----cccccccccccceEeecCccccccc
Confidence 5667777777776 455554 36666777777776643 33332210000 0011224566666666655321 1
Q ss_pred cCCCCCCCCCccEEeeCCC
Q 042327 829 IYWKPLSLPQLKEMKVDGC 847 (911)
Q Consensus 829 i~~~~~~~~~L~~L~l~~C 847 (911)
.+..+..+++|+.++++++
T Consensus 311 ~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 311 QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CGGGGTTCCCGGGEEC---
T ss_pred CccccccccceeEEEeccc
Confidence 1123344566666666654
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=224.18 Aligned_cols=286 Identities=17% Similarity=0.167 Sum_probs=203.1
Q ss_pred EEEeCCccccC--CCccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCC
Q 042327 496 LVYAGVGLTKA--PDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 496 ~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 571 (911)
+...++.+..+ ..+..+++|+.|++++|.+..+. .+.++++|++|++++|.+..+|...|.++++|++|+|++|.+
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence 44445555544 35778899999999999998873 488999999999999999999998899999999999999999
Q ss_pred ccc-CccccCCCCCCEEeecCCCCccc-cccccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccc
Q 042327 572 KSF-PLGISKLVSLQQLDLSYSSIKEL-PRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESL 649 (911)
Q Consensus 572 ~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 649 (911)
+.+ |..+.++++|++|++++|.++.+ |..+.++++|++|++++| .+..+|...+.++++|+.|++.+|....+
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~---- 191 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAI---- 191 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEE----
T ss_pred ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEe----
Confidence 966 67899999999999999999977 457888999999999999 67889988799999999999998754322
Q ss_pred ccccccCCchhHHHhhcCCCCCceEEEEEcchhh-HHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEc
Q 042327 650 KDSILFGGEEVLAEELLGLESLEVLTFTLRSVRA-LQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVF 728 (911)
Q Consensus 650 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 728 (911)
....+..+++|+.|+++.+.... +.. ......+++.|+++++ .++.++...+..+++|+.|+++
T Consensus 192 -----------~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 192 -----------RDYSFKRLYRLKVLEISHWPYLDTMTP---NCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp -----------CTTCSCSCTTCCEEEEECCTTCCEECT---TTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECC
T ss_pred -----------ChhhcccCcccceeeCCCCccccccCc---ccccCccccEEECcCC-cccccCHHHhcCccccCeeECC
Confidence 23356788999999998654321 110 0001125666666664 2344443345566677777776
Q ss_pred ccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc--ccccCCCccEEEEecCcchhHHhccCCCCCccccc
Q 042327 729 GCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVM 806 (911)
Q Consensus 729 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~ 806 (911)
++. +..+...... .+++|+.|+|++| .+..++ .+..+++|+.|+|++|. ++.++.
T Consensus 257 ~n~-l~~~~~~~~~---------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----------- 313 (477)
T 2id5_A 257 YNP-ISTIEGSMLH---------ELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEE----------- 313 (477)
T ss_dssp SSC-CCEECTTSCT---------TCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSC-CSCCCG-----------
T ss_pred CCc-CCccChhhcc---------ccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCc-CceeCH-----------
Confidence 643 4444333332 5667777777766 444432 35666777777777653 332221
Q ss_pred CCCCcccccceeccCCCC
Q 042327 807 GNLNPFAKLHYLGLVNLP 824 (911)
Q Consensus 807 ~~~~~~~~L~~L~L~~~~ 824 (911)
..+..+++|+.|+|++++
T Consensus 314 ~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp GGBSCGGGCCEEECCSSC
T ss_pred hHcCCCcccCEEEccCCC
Confidence 034556677777777655
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.7e-21 Score=234.12 Aligned_cols=147 Identities=23% Similarity=0.249 Sum_probs=123.3
Q ss_pred EEEEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc
Q 042327 495 FLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK 572 (911)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 572 (911)
.+...+..++.+|.. -.+++++|++++|.+..++. +.++++|++|++++|.+..+++..|.++++|++|+|++|.++
T Consensus 8 ~~~cs~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 8 VADCSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp EEECCSSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred eeECCCCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 455566667777642 23789999999999988764 788999999999999999998888999999999999999999
Q ss_pred ccCc-cccCCCCCCEEeecCCCCcccc-ccccCCccccEEeccccccccccChhhhcCCccccEEEccccccc
Q 042327 573 SFPL-GISKLVSLQQLDLSYSSIKELP-RELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSL 643 (911)
Q Consensus 573 ~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 643 (911)
.+|. .++++++|++|++++|.++.+| ..++++++|++|++++|. +..++...++++++|++|++++|...
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc
Confidence 9886 5899999999999999999887 568899999999999994 55555444889999999999987543
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=238.32 Aligned_cols=149 Identities=20% Similarity=0.299 Sum_probs=125.6
Q ss_pred ccEEEEeCCccccCCCccccccceEeecccccccccC--CCCCCCCccEEEccCC-CCCCcChhHHhcCCcccEEEccCC
Q 042327 493 ENFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNN-ESLKIPNDFFQYMHSLKVLNLSRI 569 (911)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~ 569 (911)
+..+...+..++.+|. ..+++++|++++|.+..+. .+.++++|++|++++| .+..+++..|.++++|++|+|++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3456677778888887 5689999999999998863 4899999999999999 466787777999999999999999
Q ss_pred CCccc-CccccCCCCCCEEeecCCCCcc-cccc--ccCCccccEEeccccccccccChhhhcCCccccEEEccccccc
Q 042327 570 KLKSF-PLGISKLVSLQQLDLSYSSIKE-LPRE--LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSL 643 (911)
Q Consensus 570 ~i~~l-p~~i~~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 643 (911)
.++.+ |..++++++|++|+|++|.++. +|.. +.++++|++|++++|......+...++++++|++|++++|...
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99976 8899999999999999999985 5655 8899999999999995433334334899999999999998543
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2.9e-21 Score=232.06 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=67.5
Q ss_pred ccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCC
Q 042327 509 VREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQ 585 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~ 585 (911)
+..++++++|++++|.+..++. +.++++|++|++++|.+..+|+..|.++++|++|+|++|.++.+| ..++++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 4455555555655555554422 345555555555555555555544555555555555555555443 3455555555
Q ss_pred EEeecCCCCccc-cccccCCccccEEeccccccccccChhhhc--CCccccEEEcccc
Q 042327 586 QLDLSYSSIKEL-PRELYALVNLKCLNLEHAEELITIPQQVIS--NFSRLHVLRMYGT 640 (911)
Q Consensus 586 ~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~--~l~~L~~L~l~~~ 640 (911)
+|++++|.++.+ |..++++++|++|++++| .+..++...+. .+++|++|++++|
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCC
Confidence 555555555533 233445555555555555 23344332222 3345555555444
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=5.4e-22 Score=240.62 Aligned_cols=330 Identities=18% Similarity=0.099 Sum_probs=212.1
Q ss_pred ccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc-ccCccccCCCCCCEE
Q 042327 509 VREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK-SFPLGISKLVSLQQL 587 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L 587 (911)
+..++++++|++++|.+.....+..+++|++|++++|.+...++. +..+++|++|++++|.++ .+|..++++++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 345667777777777777665567778888888888877665555 777888888888888777 557777888888888
Q ss_pred eecCCCCccccccccCCccccEEeccccccccccChhhhcC-CccccEEEcccccccccccccccccccCCchhHHHhhc
Q 042327 588 DLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISN-FSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELL 666 (911)
Q Consensus 588 ~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 666 (911)
++++|.++...... .+++|++|++++|...+.+|.. +.+ +++|++|++++|... ...+..++
T Consensus 253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~-~~~~~~~L~~L~Ls~n~l~---------------~~~p~~~~ 315 (768)
T 3rgz_A 253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDF-LSGACDTLTGLDLSGNHFY---------------GAVPPFFG 315 (768)
T ss_dssp ECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCC-SCTTCTTCSEEECCSSEEE---------------ECCCGGGG
T ss_pred ECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHH-HHhhcCcCCEEECcCCcCC---------------CccchHHh
Confidence 88888777332222 6778888888887554467766 444 488888888876432 22456688
Q ss_pred CCCCCceEEEEEcchh-hHHHHHhhccccccceeeEecccCCCCccccCChhccc-ccceEEEcccCC------------
Q 042327 667 GLESLEVLTFTLRSVR-ALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLK-HLYRLRVFGCRK------------ 732 (911)
Q Consensus 667 ~l~~L~~L~l~~~~~~-~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~------------ 732 (911)
.+++|+.|+++.|.+. .++... ....+.++.|+++++.-...+ ...+..++ +|+.|+++++..
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~--l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDLSFNEFSGEL-PESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHH--HTTCTTCCEEECCSSEEEECC-CTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred cCCCccEEECCCCcccCcCCHHH--HhcCCCCCEEeCcCCccCccc-cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence 8999999999988765 333211 123467888888876422122 23455555 777777766432
Q ss_pred ---ccceeecccccc-ccCCCCCccCcccEEEeeccccccccc-ccccCCCccEEEEecCcchhHHhccCCCCCcccccC
Q 042327 733 ---LEELKMDYKRLV-QATRQPCVFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMG 807 (911)
Q Consensus 733 ---l~~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~ 807 (911)
++.+....+... ..+...+.+++|+.|+|++|.....+| .++.+++|+.|+|++|.....++.
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------ 460 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------------ 460 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG------------
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH------------
Confidence 111111111111 111122256667777776663332333 366667777777776554332222
Q ss_pred CCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcccc
Q 042327 808 NLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKT 872 (911)
Q Consensus 808 ~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~ 872 (911)
.+..+++|+.|++++|.....+|..+..+++|+.|++++|.-...+|.... .+++|...+...+
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N 524 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNN 524 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSS
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCC
Confidence 466789999999999876667777788899999999999876557776543 2555555555433
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=6.7e-21 Score=223.06 Aligned_cols=127 Identities=18% Similarity=0.235 Sum_probs=110.2
Q ss_pred cccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeec
Q 042327 512 WENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLS 590 (911)
Q Consensus 512 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 590 (911)
+...++++++++.++.+|.-. .++|++|++++|.+..+++..|.++++|++|+|++|.++.+ |..++++++|++|+++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 345589999999999887622 38999999999999999988899999999999999999987 6789999999999999
Q ss_pred CCCCccccccccCCccccEEeccccccccccCh-hhhcCCccccEEEcccccc
Q 042327 591 YSSIKELPRELYALVNLKCLNLEHAEELITIPQ-QVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 591 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~ 642 (911)
+|.++.+|.. .+++|++|++++| .+..+|. ..++++++|++|++++|..
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcc
Confidence 9999999987 8999999999999 5666652 3499999999999998754
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=8.4e-22 Score=231.75 Aligned_cols=355 Identities=17% Similarity=0.126 Sum_probs=239.6
Q ss_pred EEEeCCccccCC--CccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCC
Q 042327 496 LVYAGVGLTKAP--DVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 496 ~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 571 (911)
+...++.++.++ .+..++++++|++++|.+..++. +.++++|++|++++|.+..+++..|.++++|++|++++|.+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 344444454433 56778899999999998888743 78899999999999999888888889999999999999999
Q ss_pred cccCc-cccCCCCCCEEeecCCCCcc--ccccccCCccccEEeccccccccccChhhhcCCccc----cEEEcccccccc
Q 042327 572 KSFPL-GISKLVSLQQLDLSYSSIKE--LPRELYALVNLKCLNLEHAEELITIPQQVISNFSRL----HVLRMYGTVSLN 644 (911)
Q Consensus 572 ~~lp~-~i~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L----~~L~l~~~~~~~ 644 (911)
+.+|. .++++++|++|++++|.++. +|..++++++|++|++++| .+..++...++.+++| ++|++++|....
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCcee
Confidence 88865 68899999999999998885 6888999999999999988 4555554445555555 555555542211
Q ss_pred ccc-----------------------------------------------------------------------------
Q 042327 645 FLE----------------------------------------------------------------------------- 647 (911)
Q Consensus 645 ~~~----------------------------------------------------------------------------- 647 (911)
+..
T Consensus 192 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 271 (570)
T 2z63_A 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271 (570)
T ss_dssp ECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEE
T ss_pred cCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhh
Confidence 000
Q ss_pred -----------ccccccccCCc-hhHHHhh------------------------------------------cCCCCCce
Q 042327 648 -----------SLKDSILFGGE-EVLAEEL------------------------------------------LGLESLEV 673 (911)
Q Consensus 648 -----------~~~~~~~~~~~-~~~~~~l------------------------------------------~~l~~L~~ 673 (911)
.+......+.. ...+..+ ..+++|+.
T Consensus 272 ~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~ 351 (570)
T 2z63_A 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351 (570)
T ss_dssp SCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCE
T ss_pred hhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCE
Confidence 00000000000 0000000 23455566
Q ss_pred EEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceee-ccccccccCCCCCc
Q 042327 674 LTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKM-DYKRLVQATRQPCV 752 (911)
Q Consensus 674 L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~ 752 (911)
|+++.|.+.............+.++.|+++++. +...+.. +..+++|+.|+++++. +....+ .... .
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~---------~ 419 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN-FLGLEQLEHLDFQHSN-LKQMSEFSVFL---------S 419 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE-EETCTTCCEEECTTSE-EESCTTSCTTT---------T
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCc-ccccccc-ccccCCCCEEEccCCc-cccccchhhhh---------c
Confidence 666555543321000011234688899988864 3333322 7788999999999864 332222 2222 6
Q ss_pred cCcccEEEeeccccccccc-ccccCCCccEEEEecCcchh-HHhccCCCCCcccccCCCCcccccceeccCCCCccCccC
Q 042327 753 FHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILNCPAME-EIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIY 830 (911)
Q Consensus 753 l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~ 830 (911)
+++|+.|++++|......+ .+..+++|+.|+|++|.... .++ ..+..+++|+.|++++|......+
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch------------hhhhcccCCCEEECCCCccccCCh
Confidence 8999999999995443344 47889999999999986542 222 267889999999999976444346
Q ss_pred CCCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEcccccccc
Q 042327 831 WKPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDKTWWIN 876 (911)
Q Consensus 831 ~~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~~~~~~ 876 (911)
..+..+++|+.|++++| +++.+|......+++|..++...+.|.+
T Consensus 488 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 67788999999999997 7888887665667888888777666554
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.4e-21 Score=231.42 Aligned_cols=317 Identities=14% Similarity=0.171 Sum_probs=228.3
Q ss_pred ccccceEeecccccccc-cC-CCCCCCCccEEEccCCC-CCC--cChhHHhcC------CcccEEEccCCCCcccCc--c
Q 042327 511 EWENVRRLSLMQNEITN-LK-EIPTCPHLLTLFLDNNE-SLK--IPNDFFQYM------HSLKVLNLSRIKLKSFPL--G 577 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~l------~~L~~L~L~~~~i~~lp~--~ 577 (911)
.+++|++|++++|.+.. +| .+.++++|++|++++|. ++. +|.. +..+ ++|++|++++|.++.+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 78899999999988655 34 37889999999999997 774 6655 4444 899999999999999998 8
Q ss_pred ccCCCCCCEEeecCCCCc-cccccccCCccccEEeccccccccccChhhhcCCcc-ccEEEcccccccccccc-------
Q 042327 578 ISKLVSLQQLDLSYSSIK-ELPRELYALVNLKCLNLEHAEELITIPQQVISNFSR-LHVLRMYGTVSLNFLES------- 648 (911)
Q Consensus 578 i~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~------- 648 (911)
++++++|++|++++|.++ .+| .++++++|++|++++| .+..+|.. +.++++ |++|++++|....+...
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 999999999999999999 888 8888999999999998 56688887 888888 99999998865432211
Q ss_pred -cccccccCC--chhHHHhhc-------CCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhc
Q 042327 649 -LKDSILFGG--EEVLAEELL-------GLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLAD 718 (911)
Q Consensus 649 -~~~~~~~~~--~~~~~~~l~-------~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~ 718 (911)
+....+.++ ....+..+. .+++|+.|+++.|.+..++.... ...+.++.|+++++. ++.++...+..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~l~~L~~L~Ls~N~-l~~i~~~~~~~ 479 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF--STGSPLSSINLMGNM-LTEIPKNSLKD 479 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH--HTTCCCSEEECCSSC-CSBCCSSSSEE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH--ccCCCCCEEECCCCC-CCCcCHHHhcc
Confidence 111112221 112233444 66799999999998876543221 124689999998864 44555444433
Q ss_pred -------ccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc-ccccCCCccEEEEecCcch
Q 042327 719 -------LKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILNCPAM 790 (911)
Q Consensus 719 -------l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l 790 (911)
+++|+.|+++++. +..++..... ..+++|+.|+|++| .+..+| .+..+++|+.|+|++|..+
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~--------~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNK-LTKLSDDFRA--------TTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp TTEECTTGGGCCEEECCSSC-CCBCCGGGST--------TTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCT
T ss_pred ccccccccCCccEEECcCCc-CCccChhhhh--------ccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCccc
Confidence 3399999999864 5555443320 15899999999999 566676 5889999999999765421
Q ss_pred hHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCCCC
Q 042327 791 EEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKKLP 854 (911)
Q Consensus 791 ~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~lP 854 (911)
.. ....+ .....+..+++|+.|+|++|. ++.+|.... ++|+.|++++|+ +..++
T Consensus 550 s~---N~l~~---~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 550 QG---NRTLR---EWPEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNP-NISID 603 (636)
T ss_dssp TC---CBCCC---CCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCT-TCEEE
T ss_pred cc---Ccccc---cChHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCC-Ccccc
Confidence 10 00001 112257789999999999976 488887644 899999999975 44444
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=222.06 Aligned_cols=143 Identities=18% Similarity=0.180 Sum_probs=123.0
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i 594 (911)
++|++++|.+..+|.-.. ++|++|++++|.+..+++..|.++++|++|+|++|.++.+ |..++++++|++|++++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 578999999998876222 8999999999999999988899999999999999999977 78999999999999999999
Q ss_pred ccccccccCCccccEEeccccccccc--cChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCC-
Q 042327 595 KELPRELYALVNLKCLNLEHAEELIT--IPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESL- 671 (911)
Q Consensus 595 ~~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L- 671 (911)
+.+|.. .+++|++|++++|. +.. +|.. ++++++|++|++++|.... ..+..+++|
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~~------------------~~~~~l~~L~ 139 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLEK------------------SSVLPIAHLN 139 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCCG------------------GGGGGGTTSC
T ss_pred eecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccch------------------hhccccccce
Confidence 999987 89999999999994 554 5665 9999999999999875321 235556666
Q ss_pred -ceEEEEEcch
Q 042327 672 -EVLTFTLRSV 681 (911)
Q Consensus 672 -~~L~l~~~~~ 681 (911)
+.|+++.|.+
T Consensus 140 L~~L~l~~n~l 150 (520)
T 2z7x_B 140 ISKVLLVLGET 150 (520)
T ss_dssp EEEEEEEECTT
T ss_pred eeEEEeecccc
Confidence 9999998876
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.6e-20 Score=223.90 Aligned_cols=143 Identities=26% Similarity=0.288 Sum_probs=120.9
Q ss_pred EEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc
Q 042327 497 VYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF 574 (911)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 574 (911)
.+.+.+++.+|.- -.+++++|+|++|.++.++. |.++++|++|++++|.++.++++.|.++++|++|+|++|.++.+
T Consensus 37 ~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 37 QCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp ECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 3455567777641 12589999999999999864 88999999999999999999998899999999999999999988
Q ss_pred Cc-cccCCCCCCEEeecCCCCcccccc-ccCCccccEEeccccccccc--cChhhhcCCccccEEEcccccc
Q 042327 575 PL-GISKLVSLQQLDLSYSSIKELPRE-LYALVNLKCLNLEHAEELIT--IPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 575 p~-~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
|. .+++|++|++|+|++|+++.+|.. ++++++|++|++++|. +.. +|.. ++.+++|++|++++|..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccc
Confidence 75 579999999999999999998864 7889999999999984 444 4554 78999999999998754
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=6.8e-21 Score=206.08 Aligned_cols=238 Identities=20% Similarity=0.301 Sum_probs=143.9
Q ss_pred CCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEEecc
Q 042327 534 CPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLE 613 (911)
Q Consensus 534 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 613 (911)
.++++.|++++|.+..+|.. +..+++|++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45677777777777777766 44477888888888877777777777888888888888777777777777778888777
Q ss_pred ccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccc
Q 042327 614 HAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKL 693 (911)
Q Consensus 614 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~ 693 (911)
+|..++.+|.. +.. ..+ ...+..+++|+.|+++.|.
T Consensus 159 ~n~~~~~~p~~-~~~------~~~------------------------~~~~~~l~~L~~L~L~~n~------------- 194 (328)
T 4fcg_A 159 ACPELTELPEP-LAS------TDA------------------------SGEHQGLVNLQSLRLEWTG------------- 194 (328)
T ss_dssp EETTCCCCCSC-SEE------EC-------------------------CCCEEESTTCCEEEEEEEC-------------
T ss_pred CCCCccccChh-Hhh------ccc------------------------hhhhccCCCCCEEECcCCC-------------
Confidence 77666666653 221 000 0113334444444444322
Q ss_pred cccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc-c
Q 042327 694 RSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT-F 772 (911)
Q Consensus 694 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~ 772 (911)
++.++. ... .+++|+.|+|++| .+..++ .
T Consensus 195 ---------------------------------------l~~lp~-~l~---------~l~~L~~L~L~~N-~l~~l~~~ 224 (328)
T 4fcg_A 195 ---------------------------------------IRSLPA-SIA---------NLQNLKSLKIRNS-PLSALGPA 224 (328)
T ss_dssp ---------------------------------------CCCCCG-GGG---------GCTTCCEEEEESS-CCCCCCGG
T ss_pred ---------------------------------------cCcchH-hhc---------CCCCCCEEEccCC-CCCcCchh
Confidence 221111 111 3445555555555 233332 3
Q ss_pred cccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCCCC
Q 042327 773 LVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGLKK 852 (911)
Q Consensus 773 l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L~~ 852 (911)
++.+++|+.|+|++|...+.++. .+..+++|+.|+|++|+.+..+|..+..+++|+.|++++|+.++.
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~------------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPP------------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCC------------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred hccCCCCCEEECcCCcchhhhHH------------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 55566666666666555443322 455667777777777777777766666777777777777777777
Q ss_pred CCCCCCCCCCcceEEEcccccccccee
Q 042327 853 LPLKCNSAQEQTIVVHGDKTWWINLKW 879 (911)
Q Consensus 853 lP~~~~~~l~~L~~~~~~~~~~~~l~~ 879 (911)
+|.... .++.+..+.++.+....+.+
T Consensus 293 iP~~l~-~L~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 293 LPSLIA-QLPANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp CCGGGG-GSCTTCEEECCGGGSCC---
T ss_pred ccHHHh-hccCceEEeCCHHHHHHHhh
Confidence 776543 36666777766666655544
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=230.08 Aligned_cols=170 Identities=19% Similarity=0.171 Sum_probs=134.2
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCC-CCccc-CccccCCCCCCEEeecCCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRI-KLKSF-PLGISKLVSLQQLDLSYSS 593 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~-~i~~l-p~~i~~l~~L~~L~L~~~~ 593 (911)
+..+.++++++.+|. -.++|++|++++|.+..+++..|.++++|++|+|++| .+..+ |..++++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456777888888887 5689999999999999998878999999999999999 44566 7889999999999999999
Q ss_pred Cccc-cccccCCccccEEeccccccccccCh-hhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCC
Q 042327 594 IKEL-PRELYALVNLKCLNLEHAEELITIPQ-QVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESL 671 (911)
Q Consensus 594 i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 671 (911)
++.+ |..++++++|++|++++|.....+|. ..++++++|++|++++|..... .....++.+++|
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~--------------~~~~~~~~L~~L 150 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL--------------YLHPSFGKLNSL 150 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC--------------CCCGGGGTCSSC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc--------------ccchhHhhCCCC
Confidence 9977 77899999999999999954333443 3478999999999999854321 122457889999
Q ss_pred ceEEEEEcchhh-----HHHHHhhccccccceeeEecccC
Q 042327 672 EVLTFTLRSVRA-----LQLILISHKLRSCTQALFLQSFN 706 (911)
Q Consensus 672 ~~L~l~~~~~~~-----l~~l~~~~~~~~~l~~L~l~~~~ 706 (911)
+.|+++.|.+.. +..+. ..+++.|.++++.
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~-----~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQ-----GKTLSFFSLAANS 185 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHH-----HCSSCCCEECCSB
T ss_pred CEEECCCCcCCeeCHHHccccc-----CCccceEECCCCc
Confidence 999999887643 22221 1466777776653
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=202.50 Aligned_cols=270 Identities=20% Similarity=0.187 Sum_probs=157.8
Q ss_pred EeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCCCc
Q 042327 517 RLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSSIK 595 (911)
Q Consensus 517 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~ 595 (911)
..+++++.+..+|.- -.++|++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.++
T Consensus 35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 355556666655541 124677777777776666665566677777777777776655 345667777777777777777
Q ss_pred ccccc-ccCCccccEEeccccccccccCh-hhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCce
Q 042327 596 ELPRE-LYALVNLKCLNLEHAEELITIPQ-QVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEV 673 (911)
Q Consensus 596 ~lp~~-~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 673 (911)
.+|.. +.++++|++|++++| .+..+|. ..+.++++|++|++++|... .......+..+++|+.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~--------------~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF--------------TKIQRKDFAGLTFLEE 178 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC--------------CEECTTTTTTCCEEEE
T ss_pred cCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc--------------cccCHHHccCCCCCCE
Confidence 66655 566777777777766 4556665 33666777777777665211 0112233555666666
Q ss_pred EEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCcc
Q 042327 674 LTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVF 753 (911)
Q Consensus 674 L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l 753 (911)
|+++.|.+.. .....+..+++|+.|+++++. +..++..... .+
T Consensus 179 L~l~~n~l~~---------------------------~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~---------~~ 221 (353)
T 2z80_A 179 LEIDASDLQS---------------------------YEPKSLKSIQNVSHLILHMKQ-HILLLEIFVD---------VT 221 (353)
T ss_dssp EEEEETTCCE---------------------------ECTTTTTTCSEEEEEEEECSC-STTHHHHHHH---------HT
T ss_pred EECCCCCcCc---------------------------cCHHHHhccccCCeecCCCCc-cccchhhhhh---------hc
Confidence 6666443321 112344455666677766643 3433332222 35
Q ss_pred CcccEEEeeccccccccc-----ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCc
Q 042327 754 HGLHTVHIEVCLTLKDLT-----FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRS 828 (911)
Q Consensus 754 ~~L~~L~L~~c~~l~~l~-----~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 828 (911)
++|+.|+|++| .+..++ .....+.++.++++++..-..-.. .+...+..+++|+.|+|+++ .++.
T Consensus 222 ~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~--------~l~~~l~~l~~L~~L~Ls~N-~l~~ 291 (353)
T 2z80_A 222 SSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF--------QVMKLLNQISGLLELEFSRN-QLKS 291 (353)
T ss_dssp TTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHH--------HHHHHHHTCTTCCEEECCSS-CCCC
T ss_pred ccccEEECCCC-ccccccccccccccccchhhccccccccccCcchh--------hhHHHHhcccCCCEEECCCC-CCCc
Confidence 66777777766 344332 223456677777776543221100 00113556788888888885 5667
Q ss_pred cCCCC-CCCCCccEEeeCCCCC
Q 042327 829 IYWKP-LSLPQLKEMKVDGCFG 849 (911)
Q Consensus 829 i~~~~-~~~~~L~~L~l~~C~~ 849 (911)
++... ..+++|+.|++++|+-
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred cCHHHHhcCCCCCEEEeeCCCc
Confidence 77663 6788888888888743
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=4.6e-21 Score=206.18 Aligned_cols=126 Identities=20% Similarity=0.320 Sum_probs=73.2
Q ss_pred cceEeecccccccc---cC-CCCCCCCccEEEccC-CCCCCcChhHHhcCCcccEEEccCCCCc-ccCccccCCCCCCEE
Q 042327 514 NVRRLSLMQNEITN---LK-EIPTCPHLLTLFLDN-NESLKIPNDFFQYMHSLKVLNLSRIKLK-SFPLGISKLVSLQQL 587 (911)
Q Consensus 514 ~l~~L~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L 587 (911)
+++.|++++|.+.+ +| .+..+++|++|++++ |.+....+..|..+++|++|+|++|.++ .+|..++++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 56666666666653 22 255666666666663 5444322233556666666666666665 556666666666666
Q ss_pred eecCCCCc-cccccccCCccccEEeccccccccccChhhhcCCc-cccEEEcccc
Q 042327 588 DLSYSSIK-ELPRELYALVNLKCLNLEHAEELITIPQQVISNFS-RLHVLRMYGT 640 (911)
Q Consensus 588 ~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~-~L~~L~l~~~ 640 (911)
++++|.++ .+|..+.++++|++|++++|.....+|.. +.+++ +|++|++++|
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRN 184 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSS
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCC
Confidence 66666666 55666666666666666666433355554 55555 6666666655
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=204.52 Aligned_cols=195 Identities=22% Similarity=0.276 Sum_probs=158.4
Q ss_pred ccEEEEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCC
Q 042327 493 ENFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIK 570 (911)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 570 (911)
...+...+..++.+|. .-.+++++|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|+|++|.
T Consensus 33 ~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 33 NGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3445556667777765 234699999999999998865 8899999999999999999988889999999999999999
Q ss_pred CcccCcc-ccCCCCCCEEeecCCCCccccc--cccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccc
Q 042327 571 LKSFPLG-ISKLVSLQQLDLSYSSIKELPR--ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLE 647 (911)
Q Consensus 571 i~~lp~~-i~~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 647 (911)
++.+|.. ++++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.....
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 189 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-- 189 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--
Confidence 9999876 8999999999999999999987 6788999999999999767888766689999999999998854321
Q ss_pred ccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEeccc
Q 042327 648 SLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSF 705 (911)
Q Consensus 648 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~ 705 (911)
.+..+..+++|+.|+++.|.+..+..... ...+.++.|+++++
T Consensus 190 -------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n 232 (353)
T 2z80_A 190 -------------EPKSLKSIQNVSHLILHMKQHILLLEIFV--DVTSSVECLELRDT 232 (353)
T ss_dssp -------------CTTTTTTCSEEEEEEEECSCSTTHHHHHH--HHTTTEEEEEEESC
T ss_pred -------------CHHHHhccccCCeecCCCCccccchhhhh--hhcccccEEECCCC
Confidence 34567788999999999888766554322 11345666666553
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.6e-20 Score=200.26 Aligned_cols=253 Identities=18% Similarity=0.129 Sum_probs=187.9
Q ss_pred CCccEEEccCCCCCC---cChhHHhcCCcccEEEccC-CCCc-ccCccccCCCCCCEEeecCCCCc-cccccccCCcccc
Q 042327 535 PHLLTLFLDNNESLK---IPNDFFQYMHSLKVLNLSR-IKLK-SFPLGISKLVSLQQLDLSYSSIK-ELPRELYALVNLK 608 (911)
Q Consensus 535 ~~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~ 608 (911)
.+++.|++++|.+.. +|. .+..+++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 689999999999875 565 488999999999995 8777 78999999999999999999998 8899999999999
Q ss_pred EEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCC-CCceEEEEEcchhhHHHH
Q 042327 609 CLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLE-SLEVLTFTLRSVRALQLI 687 (911)
Q Consensus 609 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~l~~l 687 (911)
+|++++|.....+|.. +.++++|++|++++|.... ..+..+..++ +|+.|+++.|.+..
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~---------------~~p~~l~~l~~~L~~L~L~~N~l~~---- 188 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG---------------AIPDSYGSFSKLFTSMTISRNRLTG---- 188 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE---------------ECCGGGGCCCTTCCEEECCSSEEEE----
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC---------------cCCHHHhhhhhcCcEEECcCCeeec----
Confidence 9999999654477876 8999999999999985431 2445677776 89999887665431
Q ss_pred HhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccc
Q 042327 688 LISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTL 767 (911)
Q Consensus 688 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l 767 (911)
.....+..++ |+.|+++++. +....+.... .+++|+.|+|++|...
T Consensus 189 -----------------------~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~---------~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 189 -----------------------KIPPTFANLN-LAFVDLSRNM-LEGDASVLFG---------SDKNTQKIHLAKNSLA 234 (313)
T ss_dssp -----------------------ECCGGGGGCC-CSEEECCSSE-EEECCGGGCC---------TTSCCSEEECCSSEEC
T ss_pred -----------------------cCChHHhCCc-ccEEECcCCc-ccCcCCHHHh---------cCCCCCEEECCCCcee
Confidence 0112334444 7788887753 3333333332 6788888888888544
Q ss_pred ccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCC
Q 042327 768 KDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGC 847 (911)
Q Consensus 768 ~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C 847 (911)
..++.+..+++|+.|+|++|.....++. .+..+++|+.|+|++++--..+|.. ..+++|+.|+++++
T Consensus 235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQ------------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCG------------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred eecCcccccCCCCEEECcCCcccCcCCh------------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 4556677788888888888654333322 4667788888888887654566654 67788888888888
Q ss_pred CCCCCCCC
Q 042327 848 FGLKKLPL 855 (911)
Q Consensus 848 ~~L~~lP~ 855 (911)
+.+...|.
T Consensus 302 ~~lc~~p~ 309 (313)
T 1ogq_A 302 KCLCGSPL 309 (313)
T ss_dssp SEEESTTS
T ss_pred CCccCCCC
Confidence 77766554
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=7.2e-20 Score=198.02 Aligned_cols=218 Identities=23% Similarity=0.349 Sum_probs=158.4
Q ss_pred ccceEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecC
Q 042327 513 ENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSY 591 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 591 (911)
.+++.|++.+|.+..+|. +..+++|++|++++|.+..+|.. +..+++|++|+|++|.++.+|..++++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 578999999999998866 77899999999999999888876 7889999999999999999999999999999999999
Q ss_pred C-CCccccccccC---------CccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhH
Q 042327 592 S-SIKELPRELYA---------LVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVL 661 (911)
Q Consensus 592 ~-~i~~lp~~~~~---------l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 661 (911)
| .+..+|..++. +++|++|++++| .+..+|.. ++++++|++|++++|.... .
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N~l~~----------------l 221 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSA----------------L 221 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESSCCCC----------------C
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCCCCCc----------------C
Confidence 6 45588877664 889999999988 56788876 8888889999888874321 1
Q ss_pred HHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccc
Q 042327 662 AEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYK 741 (911)
Q Consensus 662 ~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 741 (911)
+..+..+++|+.|+++.|. ....++ ..+..+++|+.|++++|..+..++.. .
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~--------------------------~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~-~ 273 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCT--------------------------ALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLD-I 273 (328)
T ss_dssp CGGGGGCTTCCEEECTTCT--------------------------TCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTT-G
T ss_pred chhhccCCCCCEEECcCCc--------------------------chhhhH-HHhcCCCCCCEEECCCCCchhhcchh-h
Confidence 2235555666655554222 111111 34555666777777666555543322 2
Q ss_pred cccccCCCCCccCcccEEEeeccccccccc-ccccCCCccEEEEec
Q 042327 742 RLVQATRQPCVFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILN 786 (911)
Q Consensus 742 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~ 786 (911)
. .+++|+.|+|++|..+..+| .++.+++|+.+.+..
T Consensus 274 ~---------~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 274 H---------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp G---------GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred h---------cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 2 46666777777666666655 366666666666654
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1e-19 Score=216.98 Aligned_cols=357 Identities=16% Similarity=0.114 Sum_probs=224.8
Q ss_pred EEEEeCCccccCC--CccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCC
Q 042327 495 FLVYAGVGLTKAP--DVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIK 570 (911)
Q Consensus 495 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 570 (911)
.+...++.++.++ .+.++++|++|+|++|.+..++. |.++++|++|+|++|+++.+|+..|.++++|++|+|++|.
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence 3555666666654 47889999999999999998854 8899999999999999999999999999999999999999
Q ss_pred CcccCc-cccCCCCCCEEeecCCCCcc--ccccccCCccccEEeccccccccccChhhhcCCcccc----EEEccccccc
Q 042327 571 LKSFPL-GISKLVSLQQLDLSYSSIKE--LPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLH----VLRMYGTVSL 643 (911)
Q Consensus 571 i~~lp~-~i~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~----~L~l~~~~~~ 643 (911)
++.+|. .++++++|++|++++|.++. +|..++.+++|++|++++| .+..++...+..+.+++ .++++.|...
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhhhhcccCccc
Confidence 998875 58999999999999999984 5778889999999999998 45555543344333322 2222221100
Q ss_pred cc-------------------------------cccc---------------------------c---------------
Q 042327 644 NF-------------------------------LESL---------------------------K--------------- 650 (911)
Q Consensus 644 ~~-------------------------------~~~~---------------------------~--------------- 650 (911)
.+ ...+ .
T Consensus 215 ~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~ 294 (635)
T 4g8a_A 215 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 294 (635)
T ss_dssp EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC
T ss_pred ccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence 00 0000 0
Q ss_pred ---------------cccccCCchhHHHhhcCCCCCceEEEEEcchhh--------HHHHH---------hhccccc---
Q 042327 651 ---------------DSILFGGEEVLAEELLGLESLEVLTFTLRSVRA--------LQLIL---------ISHKLRS--- 695 (911)
Q Consensus 651 ---------------~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------l~~l~---------~~~~~~~--- 695 (911)
..............+....+|+.|++..+.+.. +..+. ......+
T Consensus 295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~ 374 (635)
T 4g8a_A 295 LDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 374 (635)
T ss_dssp EEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCC
T ss_pred ccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccc
Confidence 000000000011122333444444444322100 00000 0000011
Q ss_pred -----------------------cceeeEecc-----------------------cCCCCccccCChhcccccceEEEcc
Q 042327 696 -----------------------CTQALFLQS-----------------------FNDSTSLDVSPLADLKHLYRLRVFG 729 (911)
Q Consensus 696 -----------------------~l~~L~l~~-----------------------~~~~~~~~~~~l~~l~~L~~L~l~~ 729 (911)
.++.+.+.. ++.....+...+..+++++.++++.
T Consensus 375 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp EEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred cchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence 222222221 1111111122344556666676665
Q ss_pred cCCccceeeccccccccCCCCCccCcccEEEeeccccccccc--ccccCCCccEEEEecCcchhHHhccCCCCCcccccC
Q 042327 730 CRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMG 807 (911)
Q Consensus 730 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~ 807 (911)
+ .+..+.+.... .+++|+.|+|++|.....+. .+..+++|+.|+|++|. ++.++. .
T Consensus 455 n-~l~~~~~~~~~---------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-----------~ 512 (635)
T 4g8a_A 455 T-HTRVAFNGIFN---------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-----------T 512 (635)
T ss_dssp S-CCEECCTTTTT---------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-----------T
T ss_pred c-ccccccccccc---------cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh-----------H
Confidence 4 23333332222 68899999999996666543 47889999999999974 444422 1
Q ss_pred CCCcccccceeccCCCCccCccCC-CCCCCCCccEEeeCCCCCCCCCCCCCCCCC-CcceEEEcccccccc
Q 042327 808 NLNPFAKLHYLGLVNLPNLRSIYW-KPLSLPQLKEMKVDGCFGLKKLPLKCNSAQ-EQTIVVHGDKTWWIN 876 (911)
Q Consensus 808 ~~~~~~~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l-~~L~~~~~~~~~~~~ 876 (911)
.+.++++|+.|+|+++ ++..++. .+..+++|+.|++++| +++.+|......+ .+|..++...+-|.+
T Consensus 513 ~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 5778999999999996 5777654 4677999999999995 7777765544433 567777766666654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=203.86 Aligned_cols=238 Identities=21% Similarity=0.260 Sum_probs=178.7
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
+...+..++.+|. .-.++++.|++++|.+..++ .+.++++|++|++++|.+..+++..|.++++|++|+|++|.++.
T Consensus 48 v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 48 VICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126 (440)
T ss_dssp EECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS
T ss_pred EEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe
Confidence 3444555666664 22368888999998888764 47888999999999998888888888889999999999998888
Q ss_pred cCc-cccCCCCCCEEeecCCCCccccc-cccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccccc
Q 042327 574 FPL-GISKLVSLQQLDLSYSSIKELPR-ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKD 651 (911)
Q Consensus 574 lp~-~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 651 (911)
+|. .+..+++|++|+|++|.++.+|. .+.++++|++|++++|+.+..++...+.++++|++|++++|....+
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------ 200 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------ 200 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------
T ss_pred eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------
Confidence 865 58888999999999998888876 5677889999999988788888877788899999999988743321
Q ss_pred ccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccC
Q 042327 652 SILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCR 731 (911)
Q Consensus 652 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 731 (911)
..+..+++|+.|+++.|. ++.+....+..+++|+.|+++++
T Consensus 201 -----------~~~~~l~~L~~L~Ls~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~n- 241 (440)
T 3zyj_A 201 -----------PNLTPLIKLDELDLSGNH---------------------------LSAIRPGSFQGLMHLQKLWMIQS- 241 (440)
T ss_dssp -----------CCCTTCSSCCEEECTTSC---------------------------CCEECTTTTTTCTTCCEEECTTC-
T ss_pred -----------cccCCCcccCEEECCCCc---------------------------cCccChhhhccCccCCEEECCCC-
Confidence 125556666666665333 33344456777888999998875
Q ss_pred CccceeeccccccccCCCCCccCcccEEEeecccccccccc--cccCCCccEEEEecCcc
Q 042327 732 KLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTF--LVFAPNLKYAEILNCPA 789 (911)
Q Consensus 732 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~ 789 (911)
.+..+.+.... .+++|+.|+|++| .++.++. +..+++|+.|+|++|+.
T Consensus 242 ~l~~~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 242 QIQVIERNAFD---------NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCEECTTSST---------TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ceeEEChhhhc---------CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 46655554443 6788999999988 6666654 67788999999988653
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2.3e-19 Score=192.63 Aligned_cols=124 Identities=21% Similarity=0.273 Sum_probs=101.3
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc---CccccCCCCCCEEeecCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF---PLGISKLVSLQQLDLSYS 592 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~ 592 (911)
+.+++.++.+..+|. .-.++|++|++++|.+..+|..+|.++++|++|+|++|.++.+ |..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 356777777777765 2236899999999999899988888999999999999988755 567778899999999999
Q ss_pred CCccccccccCCccccEEeccccccccccCh-hhhcCCccccEEEccccc
Q 042327 593 SIKELPRELYALVNLKCLNLEHAEELITIPQ-QVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 593 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 641 (911)
.++.+|..+..+++|++|++++| .+..++. ..+.++++|++|++++|.
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc
Confidence 99999988889999999999998 5566664 447888999999988764
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=1.9e-19 Score=204.57 Aligned_cols=237 Identities=22% Similarity=0.247 Sum_probs=170.3
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
+...+.+++.+|. .-.++++.|++++|.+..++ .+.++++|++|++++|.+..+++..|.++++|++|+|++|.++.
T Consensus 59 v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 59 VVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred EEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence 3444555555553 22357888888888887763 37788888888888888888887778888888888888888887
Q ss_pred cCcc-ccCCCCCCEEeecCCCCccccc-cccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccccc
Q 042327 574 FPLG-ISKLVSLQQLDLSYSSIKELPR-ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKD 651 (911)
Q Consensus 574 lp~~-i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 651 (911)
+|.. ++++++|++|+|++|.++.+|. .+.++++|++|++++|+.+..+|...+.++++|++|++++|....+
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------ 211 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------ 211 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------
Confidence 7654 7778888888888888887775 4667888888888887778888877688888888888887743211
Q ss_pred ccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccC
Q 042327 652 SILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCR 731 (911)
Q Consensus 652 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 731 (911)
..+..+++|+.|+++.|. ++.+....+..+++|+.|+++++
T Consensus 212 -----------~~~~~l~~L~~L~Ls~N~---------------------------l~~~~~~~~~~l~~L~~L~L~~n- 252 (452)
T 3zyi_A 212 -----------PNLTPLVGLEELEMSGNH---------------------------FPEIRPGSFHGLSSLKKLWVMNS- 252 (452)
T ss_dssp -----------CCCTTCTTCCEEECTTSC---------------------------CSEECGGGGTTCTTCCEEECTTS-
T ss_pred -----------ccccccccccEEECcCCc---------------------------CcccCcccccCccCCCEEEeCCC-
Confidence 125556666666665433 23333345667788888888875
Q ss_pred CccceeeccccccccCCCCCccCcccEEEeecccccccccc--cccCCCccEEEEecCc
Q 042327 732 KLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTF--LVFAPNLKYAEILNCP 788 (911)
Q Consensus 732 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 788 (911)
.+..+.+.... .+++|+.|+|++| .+..++. +..+++|+.|+|++|+
T Consensus 253 ~l~~~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 QVSLIERNAFD---------GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCEECTTTTT---------TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCceECHHHhc---------CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 35555444433 6788888888888 6666653 6678888888888765
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=4e-19 Score=193.04 Aligned_cols=248 Identities=17% Similarity=0.201 Sum_probs=182.1
Q ss_pred CCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEEeecCCCCccc-cccccCCccccEEec
Q 042327 535 PHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQLDLSYSSIKEL-PRELYALVNLKCLNL 612 (911)
Q Consensus 535 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l 612 (911)
.++++++++++.+..+|..+ .+.|++|+|++|.++.+|. .++++++|++|++++|.++.+ |..+.++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 37999999999999998763 3689999999999998865 799999999999999999987 778999999999999
Q ss_pred cccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhcc
Q 042327 613 EHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHK 692 (911)
Q Consensus 613 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~ 692 (911)
++| .+..+|.. + .++|++|++++|..... ....+..+++|+.|+++.|.+....
T Consensus 108 s~n-~l~~l~~~-~--~~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~------- 161 (330)
T 1xku_A 108 SKN-QLKELPEK-M--PKTLQELRVHENEITKV---------------RKSVFNGLNQMIVVELGTNPLKSSG------- 161 (330)
T ss_dssp CSS-CCSBCCSS-C--CTTCCEEECCSSCCCBB---------------CHHHHTTCTTCCEEECCSSCCCGGG-------
T ss_pred CCC-cCCccChh-h--cccccEEECCCCccccc---------------CHhHhcCCccccEEECCCCcCCccC-------
Confidence 999 57888876 3 37999999998854322 3455788899999988766543211
Q ss_pred ccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeecccccccc--
Q 042327 693 LRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDL-- 770 (911)
Q Consensus 693 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-- 770 (911)
.....+..+++|+.|+++++. ++.++.. .+++|+.|++++| .+..+
T Consensus 162 ------------------~~~~~~~~l~~L~~L~l~~n~-l~~l~~~------------~~~~L~~L~l~~n-~l~~~~~ 209 (330)
T 1xku_A 162 ------------------IENGAFQGMKKLSYIRIADTN-ITTIPQG------------LPPSLTELHLDGN-KITKVDA 209 (330)
T ss_dssp ------------------BCTTGGGGCTTCCEEECCSSC-CCSCCSS------------CCTTCSEEECTTS-CCCEECT
T ss_pred ------------------cChhhccCCCCcCEEECCCCc-cccCCcc------------ccccCCEEECCCC-cCCccCH
Confidence 112345667788888887653 4433211 2467888888887 45544
Q ss_pred cccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCC
Q 042327 771 TFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGL 850 (911)
Q Consensus 771 ~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L 850 (911)
..+..+++|+.|+|++|.. +.++. ..+..+++|+.|+|++| .+..+|.....+++|+.|++++| .+
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l-~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i 275 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSI-SAVDN-----------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NI 275 (330)
T ss_dssp GGGTTCTTCCEEECCSSCC-CEECT-----------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CC
T ss_pred HHhcCCCCCCEEECCCCcC-ceeCh-----------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cC
Confidence 2477788888888887543 22211 14556788888888885 46677777777888888888884 57
Q ss_pred CCCCCCC
Q 042327 851 KKLPLKC 857 (911)
Q Consensus 851 ~~lP~~~ 857 (911)
+.+|...
T Consensus 276 ~~~~~~~ 282 (330)
T 1xku_A 276 SAIGSND 282 (330)
T ss_dssp CCCCTTS
T ss_pred CccChhh
Confidence 7776543
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=5.4e-19 Score=205.76 Aligned_cols=254 Identities=20% Similarity=0.198 Sum_probs=115.9
Q ss_pred ceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCC
Q 042327 515 VRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 515 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i 594 (911)
++.|++++|.+..+|.... ++|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++|++
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence 4444444444444433111 444444554444444443 23444445555444444443 344444445544444
Q ss_pred ccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceE
Q 042327 595 KELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVL 674 (911)
Q Consensus 595 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 674 (911)
+.+|. .+++|+.|++++| .+..+|.. +++|++|++++|....+ . ..+++|+.|
T Consensus 114 ~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l------------~-------~~~~~L~~L 166 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL------------P-------ALPSELCKL 166 (622)
T ss_dssp CCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCC------------C-------CCCTTCCEE
T ss_pred CCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCc------------C-------CccCCCCEE
Confidence 44443 3344444444444 33444431 24444444444422110 0 012334444
Q ss_pred EEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccC
Q 042327 675 TFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFH 754 (911)
Q Consensus 675 ~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~ 754 (911)
.++.|.+..++ ..+++++.|+++++. ++.++. .+++|+.|++++| .+..++. .++
T Consensus 167 ~L~~N~l~~l~------~~~~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N-~l~~l~~-------------~~~ 221 (622)
T 3g06_A 167 WAYNNQLTSLP------MLPSGLQELSVSDNQ-LASLPT----LPSELYKLWAYNN-RLTSLPA-------------LPS 221 (622)
T ss_dssp ECCSSCCSCCC------CCCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSS-CCSSCCC-------------CCT
T ss_pred ECCCCCCCCCc------ccCCCCcEEECCCCC-CCCCCC----ccchhhEEECcCC-cccccCC-------------CCC
Confidence 44444433322 122344444444432 222221 1245666666554 2332211 245
Q ss_pred cccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCC
Q 042327 755 GLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPL 834 (911)
Q Consensus 755 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~ 834 (911)
+|+.|+|++| .++.+| ..+++|+.|+|++|. ++.++ . .+++|+.|+|++| .++.+|..+.
T Consensus 222 ~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp--------------~-~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 222 GLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLP--------------M-LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp TCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCC--------------C-CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred CCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCC--------------c-ccccCcEEeCCCC-CCCcCCHHHh
Confidence 6666666666 455555 445666666666642 22221 1 3456666666664 4556655555
Q ss_pred CCCCccEEeeCCCC
Q 042327 835 SLPQLKEMKVDGCF 848 (911)
Q Consensus 835 ~~~~L~~L~l~~C~ 848 (911)
.+++|+.|++++|+
T Consensus 282 ~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 282 HLSSETTVNLEGNP 295 (622)
T ss_dssp GSCTTCEEECCSCC
T ss_pred hccccCEEEecCCC
Confidence 66666666666654
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.3e-19 Score=197.01 Aligned_cols=262 Identities=15% Similarity=0.147 Sum_probs=170.3
Q ss_pred CCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCCCccc-cccccCCccccEEec
Q 042327 535 PHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSSIKEL-PRELYALVNLKCLNL 612 (911)
Q Consensus 535 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l 612 (911)
.++++++++++.+..+|..+ .++|++|++++|.++.+ |..++++++|++|++++|.++.+ |..+.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 37999999999999999864 47899999999999987 45799999999999999999987 778899999999999
Q ss_pred cccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhcc
Q 042327 613 EHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHK 692 (911)
Q Consensus 613 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~ 692 (911)
++| .+..+|.. +. ++|++|++++|....+ ....+..+++|+.|+++.|.+...........
T Consensus 110 ~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 110 SKN-HLVEIPPN-LP--SSLVELRIHDNRIRKV---------------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp CSS-CCCSCCSS-CC--TTCCEEECCSSCCCCC---------------CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred CCC-cCCccCcc-cc--ccCCEEECCCCccCcc---------------CHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 999 67889876 33 8999999999854322 23347788999999999887653221111111
Q ss_pred ccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc-
Q 042327 693 LRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT- 771 (911)
Q Consensus 693 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~- 771 (911)
.. .++.|+++++. ++.++.. + .++|+.|+++++ .+..+.+.... .+++|+.|+|++| .+..++
T Consensus 171 ~l-~L~~L~l~~n~-l~~l~~~-~--~~~L~~L~l~~n-~i~~~~~~~l~---------~l~~L~~L~L~~N-~l~~~~~ 234 (332)
T 2ft3_A 171 GL-KLNYLRISEAK-LTGIPKD-L--PETLNELHLDHN-KIQAIELEDLL---------RYSKLYRLGLGHN-QIRMIEN 234 (332)
T ss_dssp SC-CCSCCBCCSSB-CSSCCSS-S--CSSCSCCBCCSS-CCCCCCTTSST---------TCTTCSCCBCCSS-CCCCCCT
T ss_pred CC-ccCEEECcCCC-CCccCcc-c--cCCCCEEECCCC-cCCccCHHHhc---------CCCCCCEEECCCC-cCCcCCh
Confidence 11 45555555432 2222211 1 146666666654 23333322222 4566666666666 444443
Q ss_pred -ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCC-C------CCCCccEEe
Q 042327 772 -FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKP-L------SLPQLKEMK 843 (911)
Q Consensus 772 -~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~-~------~~~~L~~L~ 843 (911)
.+..+++|+.|+|++|. ++.++. .+..+++|+.|+++++ .++.++... . ..++|+.|+
T Consensus 235 ~~~~~l~~L~~L~L~~N~-l~~lp~------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNK-LSRVPA------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp TGGGGCTTCCEEECCSSC-CCBCCT------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred hHhhCCCCCCEEECCCCc-CeecCh------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceE
Confidence 35666666666666643 222221 3455666666666663 344444321 1 135566666
Q ss_pred eCCCC
Q 042327 844 VDGCF 848 (911)
Q Consensus 844 l~~C~ 848 (911)
++++|
T Consensus 301 l~~N~ 305 (332)
T 2ft3_A 301 LFNNP 305 (332)
T ss_dssp CCSSS
T ss_pred eecCc
Confidence 66655
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=6.3e-19 Score=200.23 Aligned_cols=241 Identities=19% Similarity=0.210 Sum_probs=157.0
Q ss_pred ceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEeecCCC
Q 042327 515 VRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSS 593 (911)
Q Consensus 515 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~ 593 (911)
.+.++..+..+..+|.- -.++|++|++++|.+..+++..|.++++|++|+|++|.++.++ ..+.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34555555555555431 1246677777777666666666666777777777777666553 556666677777777776
Q ss_pred Ccccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCc
Q 042327 594 IKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLE 672 (911)
Q Consensus 594 i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 672 (911)
++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++++|
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~-------------------------------- 181 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGEL-------------------------------- 181 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCC--------------------------------
T ss_pred CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCC--------------------------------
Confidence 6666554 455666666766666 455565554666666666666543
Q ss_pred eEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCc
Q 042327 673 VLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCV 752 (911)
Q Consensus 673 ~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 752 (911)
+.++.++...+..+++|+.|+++++. +..++ ... .
T Consensus 182 ---------------------------------~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~--~~~---------~ 216 (452)
T 3zyi_A 182 ---------------------------------KKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP--NLT---------P 216 (452)
T ss_dssp ---------------------------------TTCCEECTTTTTTCTTCCEEECTTSC-CSSCC--CCT---------T
T ss_pred ---------------------------------CCccccChhhccCCCCCCEEECCCCc-ccccc--ccc---------c
Confidence 11222222346677899999998863 55432 111 6
Q ss_pred cCcccEEEeeccccccccc--ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccC
Q 042327 753 FHGLHTVHIEVCLTLKDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIY 830 (911)
Q Consensus 753 l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~ 830 (911)
+++|+.|+|++| .+..++ .+..+++|+.|+|++|.. ..+.. ..+..+++|+.|+|+++ .+..++
T Consensus 217 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 217 LVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQV-SLIER-----------NAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp CTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCC-CEECT-----------TTTTTCTTCCEEECCSS-CCSCCC
T ss_pred cccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcC-ceECH-----------HHhcCCCCCCEEECCCC-cCCccC
Confidence 889999999998 555543 478899999999998643 33211 15677899999999986 567776
Q ss_pred CC-CCCCCCccEEeeCCCC
Q 042327 831 WK-PLSLPQLKEMKVDGCF 848 (911)
Q Consensus 831 ~~-~~~~~~L~~L~l~~C~ 848 (911)
.. +..+++|+.|+++++|
T Consensus 283 ~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSSTTCTTCCEEECCSSC
T ss_pred hHHhccccCCCEEEccCCC
Confidence 54 4568999999999864
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=197.63 Aligned_cols=240 Identities=17% Similarity=0.218 Sum_probs=143.8
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEeecCCCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i 594 (911)
+.++..+..+..+|.- -.++++.|++++|.+..+++..|.++++|++|+|++|.++.++ ..+.++++|++|+|++|++
T Consensus 46 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 3444555555544431 1145555666655555555555555555666666555555443 3455555555555555555
Q ss_pred ccccc-cccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCce
Q 042327 595 KELPR-ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEV 673 (911)
Q Consensus 595 ~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 673 (911)
+.+|. .+..+++|++|++++| .+..+|...+.++++|++|++++|
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~--------------------------------- 170 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGEL--------------------------------- 170 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCC---------------------------------
T ss_pred CeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCC---------------------------------
Confidence 55544 2445555555555555 344454444555555555555432
Q ss_pred EEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCcc
Q 042327 674 LTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVF 753 (911)
Q Consensus 674 L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l 753 (911)
+.+..++...+..+++|+.|+++++ .++.++. .. .+
T Consensus 171 --------------------------------~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~---------~l 206 (440)
T 3zyj_A 171 --------------------------------KRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LT---------PL 206 (440)
T ss_dssp --------------------------------TTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CT---------TC
T ss_pred --------------------------------CCcceeCcchhhcccccCeecCCCC-cCccccc--cC---------CC
Confidence 1222223335667788999999886 4554431 11 68
Q ss_pred CcccEEEeeccccccccc--ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCC
Q 042327 754 HGLHTVHIEVCLTLKDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYW 831 (911)
Q Consensus 754 ~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~ 831 (911)
++|+.|+|++| .+..++ .+..+++|+.|+|++|. ++.+.. ..+..+++|+.|+|+++ .++.++.
T Consensus 207 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~ 272 (440)
T 3zyj_A 207 IKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIER-----------NAFDNLQSLVEINLAHN-NLTLLPH 272 (440)
T ss_dssp SSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECT-----------TSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred cccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEECh-----------hhhcCCCCCCEEECCCC-CCCccCh
Confidence 88999999988 566553 47788999999998854 333321 15677889999999885 5666665
Q ss_pred C-CCCCCCccEEeeCCCC
Q 042327 832 K-PLSLPQLKEMKVDGCF 848 (911)
Q Consensus 832 ~-~~~~~~L~~L~l~~C~ 848 (911)
. +..+++|+.|+++++|
T Consensus 273 ~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTSSCTTCCEEECCSSC
T ss_pred hHhccccCCCEEEcCCCC
Confidence 4 4568889999988865
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=9.2e-19 Score=197.83 Aligned_cols=289 Identities=20% Similarity=0.189 Sum_probs=156.9
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP 575 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 575 (911)
+...+..++.+|.+ .++++.|++++|.+..+|.. .++|++|++++|.+..++.. .++|++|++++|.++.+|
T Consensus 76 L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 76 LELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp EECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC
T ss_pred EEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc
Confidence 44444455554442 35677777777776666543 35677777777766655431 256777777777666666
Q ss_pred ccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccc---ccccc
Q 042327 576 LGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLE---SLKDS 652 (911)
Q Consensus 576 ~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~---~~~~~ 652 (911)
.++++++|++|++++|+++.+|..+ .+|++|++++| .+..+|. ++++++|++|++++|....+.. .+...
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L 220 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESI 220 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred -ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcccEE
Confidence 4666777777777777666666433 36677777666 4555663 6667777777766664332110 11111
Q ss_pred cccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCC
Q 042327 653 ILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRK 732 (911)
Q Consensus 653 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 732 (911)
...++.......+..+++|+.|+++.|.+..++. ....++.|+++++. ++.++. .+++|+.|+++++.
T Consensus 221 ~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~-l~~l~~----~~~~L~~L~ls~N~- 288 (454)
T 1jl5_A 221 VAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNY-LTDLPE----LPQSLTFLDVSENI- 288 (454)
T ss_dssp ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSC-
T ss_pred ECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCc-ccccCc----ccCcCCEEECcCCc-
Confidence 1111111112236677888888888777665331 23577777777653 333321 13677777777653
Q ss_pred ccceeeccccccccCCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcc
Q 042327 733 LEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPF 812 (911)
Q Consensus 733 l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 812 (911)
+..++. ..++|+.|++++| .+..++.+ .++|+.|++++|. +..++ ..+
T Consensus 289 l~~l~~-------------~~~~L~~L~l~~N-~l~~i~~~--~~~L~~L~Ls~N~-l~~lp---------------~~~ 336 (454)
T 1jl5_A 289 FSGLSE-------------LPPNLYYLNASSN-EIRSLCDL--PPSLEELNVSNNK-LIELP---------------ALP 336 (454)
T ss_dssp CSEESC-------------CCTTCCEEECCSS-CCSEECCC--CTTCCEEECCSSC-CSCCC---------------CCC
T ss_pred cCcccC-------------cCCcCCEEECcCC-cCCcccCC--cCcCCEEECCCCc-ccccc---------------ccC
Confidence 332210 2245666666665 33332211 1356666666643 22221 113
Q ss_pred cccceeccCCCCccCccCCCCCCCCCccEEeeCCC
Q 042327 813 AKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGC 847 (911)
Q Consensus 813 ~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C 847 (911)
++|+.|++++| .++.+|. .+++|++|++++|
T Consensus 337 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred CcCCEEECCCC-ccccccc---hhhhccEEECCCC
Confidence 55666666654 3444543 3456666666654
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=1.6e-18 Score=195.89 Aligned_cols=282 Identities=21% Similarity=0.229 Sum_probs=186.9
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP 575 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 575 (911)
+...++.+..++.. .+++++|++++|.+..+|.+..+++|++|++++|.+..+|.. ..+|++|++++|.++.+|
T Consensus 116 L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~ 189 (454)
T 1jl5_A 116 LLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP 189 (454)
T ss_dssp EECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC
T ss_pred EECCCCccCcccCC--CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc
Confidence 33344444444432 258888888888888888888888899999998888877753 358889999999888887
Q ss_pred ccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccccccccc
Q 042327 576 LGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILF 655 (911)
Q Consensus 576 ~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 655 (911)
.++++++|++|++++|.++.+|... ++|++|++++| .+..+|. ++.+++|++|++++|....+
T Consensus 190 -~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l---------- 252 (454)
T 1jl5_A 190 -ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTL---------- 252 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSC----------
T ss_pred -cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcc----------
Confidence 6888999999999999888877543 58899999988 5678885 88999999999998754321
Q ss_pred CCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccc
Q 042327 656 GGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEE 735 (911)
Q Consensus 656 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 735 (911)
+ ..+++|+.|+++.|.+..++. ..+.++.|+++++. ++.++ .+ .++|+.|+++++. +..
T Consensus 253 ------~---~~~~~L~~L~l~~N~l~~l~~------~~~~L~~L~ls~N~-l~~l~--~~--~~~L~~L~l~~N~-l~~ 311 (454)
T 1jl5_A 253 ------P---DLPPSLEALNVRDNYLTDLPE------LPQSLTFLDVSENI-FSGLS--EL--PPNLYYLNASSNE-IRS 311 (454)
T ss_dssp ------C---SCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSC-CSEES--CC--CTTCCEEECCSSC-CSE
T ss_pred ------c---ccccccCEEECCCCcccccCc------ccCcCCEEECcCCc-cCccc--Cc--CCcCCEEECcCCc-CCc
Confidence 0 023789999999888765432 34688889888753 33332 11 2688999998753 443
Q ss_pred eeeccccccccCCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCccccc
Q 042327 736 LKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKL 815 (911)
Q Consensus 736 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L 815 (911)
+. . ..++|+.|++++| .+..+|.. +++|+.|++++|. ++.+ + . .+++|
T Consensus 312 i~----~---------~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~-l~~l---------p----~--~l~~L 359 (454)
T 1jl5_A 312 LC----D---------LPPSLEELNVSNN-KLIELPAL--PPRLERLIASFNH-LAEV---------P----E--LPQNL 359 (454)
T ss_dssp EC----C---------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSCC---------C----C--CCTTC
T ss_pred cc----C---------CcCcCCEEECCCC-cccccccc--CCcCCEEECCCCc-cccc---------c----c--hhhhc
Confidence 21 0 2358899999888 56666543 6889999998864 3322 1 1 46889
Q ss_pred ceeccCCCCccC--ccCCCCCCC-------------CCccEEeeCCCCCCCCCC
Q 042327 816 HYLGLVNLPNLR--SIYWKPLSL-------------PQLKEMKVDGCFGLKKLP 854 (911)
Q Consensus 816 ~~L~L~~~~~L~--~i~~~~~~~-------------~~L~~L~l~~C~~L~~lP 854 (911)
+.|++++++-.. .+|.....+ ++|+.|++++| .++.+|
T Consensus 360 ~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~ 412 (454)
T 1jl5_A 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFP 412 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCC---------------------------
T ss_pred cEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCccc
Confidence 999998865444 455555444 88999999995 455433
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.3e-18 Score=186.90 Aligned_cols=240 Identities=20% Similarity=0.217 Sum_probs=171.1
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcC--hhHHhcCCcccEEEccCCCC
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIP--NDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~i 571 (911)
+...+.+++.+|. .-.+++++|++++|.+..++. +..+++|++|++++|.+..+. +..+..+++|++|++++|.+
T Consensus 12 l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 3445556666665 234689999999999998876 689999999999999887653 23366799999999999999
Q ss_pred cccCccccCCCCCCEEeecCCCCccccc--cccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccc
Q 042327 572 KSFPLGISKLVSLQQLDLSYSSIKELPR--ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESL 649 (911)
Q Consensus 572 ~~lp~~i~~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 649 (911)
+.+|..+..+++|++|++++|.++.+|. .+.++++|++|++++|. +..++...+.++++|++|++++|....
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----- 164 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE----- 164 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG-----
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc-----
Confidence 9999999999999999999999998874 68889999999999994 555555558999999999999874321
Q ss_pred ccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcc
Q 042327 650 KDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFG 729 (911)
Q Consensus 650 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 729 (911)
...+..+..+++|+.|+++.|. ++......+..+++|+.|++++
T Consensus 165 ---------~~~~~~~~~l~~L~~L~Ls~n~---------------------------l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 165 ---------NFLPDIFTELRNLTFLDLSQCQ---------------------------LEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp ---------GEECSCCTTCTTCCEEECTTSC---------------------------CCEECTTTTTTCTTCCEEECTT
T ss_pred ---------ccchhHHhhCcCCCEEECCCCC---------------------------cCCcCHHHhcCCCCCCEEECCC
Confidence 0123345566666666665332 2222234455667777777776
Q ss_pred cCCccceeeccccccccCCCCCccCcccEEEeecccccccc-c-ccccCC-CccEEEEecCcc
Q 042327 730 CRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDL-T-FLVFAP-NLKYAEILNCPA 789 (911)
Q Consensus 730 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~-~L~~L~L~~c~~ 789 (911)
+. +..+...... .+++|+.|+|++|. +... + .+..++ +|+.|+|++|+.
T Consensus 209 N~-l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 209 NN-FFSLDTFPYK---------CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SC-CSBCCSGGGT---------TCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred Cc-cCccChhhcc---------CcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCCe
Confidence 53 4433332222 56777777777773 3332 2 355553 677777776543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=9.2e-19 Score=185.83 Aligned_cols=219 Identities=20% Similarity=0.232 Sum_probs=137.2
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCC-
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSS- 593 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~- 593 (911)
+.++..++.+..+|. .-.++|++|++++|.+..+++..|..+++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 355555666655543 2245777777777777777766677777777777777777755 5667777777777777775
Q ss_pred Cccc-cccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCc
Q 042327 594 IKEL-PRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLE 672 (911)
Q Consensus 594 i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 672 (911)
++.+ |..+..+++|++|++++| .+..++...+.++++|++|++++|..... ....+..+++|+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~ 156 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQAL---------------PDDTFRDLGNLT 156 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTCTTCC
T ss_pred ccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCccccc---------------CHhHhccCCCcc
Confidence 6666 455666777777777777 34555444467777777777776643211 122345556666
Q ss_pred eEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCc
Q 042327 673 VLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCV 752 (911)
Q Consensus 673 ~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 752 (911)
.|+++.|.+ +.++...+..+++|+.|+++++. +..+.+.... .
T Consensus 157 ~L~l~~n~l---------------------------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~---------~ 199 (285)
T 1ozn_A 157 HLFLHGNRI---------------------------SSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFR---------D 199 (285)
T ss_dssp EEECCSSCC---------------------------CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT---------T
T ss_pred EEECCCCcc---------------------------cccCHHHhcCccccCEEECCCCc-ccccCHhHcc---------C
Confidence 666553332 22222345566777777777653 4444343333 5
Q ss_pred cCcccEEEeecccccccccc--cccCCCccEEEEecCcc
Q 042327 753 FHGLHTVHIEVCLTLKDLTF--LVFAPNLKYAEILNCPA 789 (911)
Q Consensus 753 l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~ 789 (911)
+++|+.|+|++| .+..++. +..+++|+.|+|++|+.
T Consensus 200 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 200 LGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 777888888877 5555542 67778888888887654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=8.2e-20 Score=196.95 Aligned_cols=261 Identities=15% Similarity=0.072 Sum_probs=152.0
Q ss_pred ceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCC
Q 042327 515 VRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYS 592 (911)
Q Consensus 515 l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 592 (911)
++..++..+.+...+. +..+++|++|++++|.+..+++..|..+++|++|+|++|.++.++. +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 4444555555543321 3456788888888888888887778888888888888888876654 788888888888888
Q ss_pred CCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCc
Q 042327 593 SIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLE 672 (911)
Q Consensus 593 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 672 (911)
.++.+|. +++|++|++++| .+..++. ..+++|++|++++|..... ....+..+++|+
T Consensus 91 ~l~~l~~----~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~~---------------~~~~~~~l~~L~ 147 (317)
T 3o53_A 91 YVQELLV----GPSIETLHAANN-NISRVSC---SRGQGKKNIYLANNKITML---------------RDLDEGCRSRVQ 147 (317)
T ss_dssp EEEEEEE----CTTCCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCCSG---------------GGBCTGGGSSEE
T ss_pred ccccccC----CCCcCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCCCc---------------cchhhhccCCCC
Confidence 8887763 378888888887 4555554 3467788888887744321 222345566677
Q ss_pred eEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCCh-hcccccceEEEcccCCccceeeccccccccCCCCC
Q 042327 673 VLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPL-ADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPC 751 (911)
Q Consensus 673 ~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 751 (911)
.|+++.|.+..+ ....+ ..+++|+.|+++++. ++.++...
T Consensus 148 ~L~Ls~N~l~~~---------------------------~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~----------- 188 (317)
T 3o53_A 148 YLDLKLNEIDTV---------------------------NFAELAASSDTLEHLNLQYNF-IYDVKGQV----------- 188 (317)
T ss_dssp EEECTTSCCCEE---------------------------EGGGGGGGTTTCCEEECTTSC-CCEEECCC-----------
T ss_pred EEECCCCCCCcc---------------------------cHHHHhhccCcCCEEECCCCc-Cccccccc-----------
Confidence 776665443321 11122 234555666665542 33321111
Q ss_pred ccCcccEEEeeccccccccc-ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCcc-Ccc
Q 042327 752 VFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNL-RSI 829 (911)
Q Consensus 752 ~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L-~~i 829 (911)
.+++|+.|+|++| .+..++ .+..+++|+.|+|++|. ++.++. .+..+++|+.|++++++-. ..+
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~------------~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEK------------ALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECT------------TCCCCTTCCEEECTTCCCBHHHH
T ss_pred ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhh------------HhhcCCCCCEEEccCCCccCcCH
Confidence 3555666666655 344432 35555666666666542 222221 3444556666666655433 223
Q ss_pred CCCCCCCCCccEEeeCCCCCCCC
Q 042327 830 YWKPLSLPQLKEMKVDGCFGLKK 852 (911)
Q Consensus 830 ~~~~~~~~~L~~L~l~~C~~L~~ 852 (911)
+.....+++|+.|++.+|+.++.
T Consensus 255 ~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccceEEECCCchhccC
Confidence 23334455666666655555444
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.1e-17 Score=194.82 Aligned_cols=256 Identities=21% Similarity=0.197 Sum_probs=202.6
Q ss_pred cEEEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 494 NFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
..+...+..++.+|... .++++.|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|+|++|.++.
T Consensus 43 ~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CEEECCSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCC
T ss_pred cEEEecCCCcCccChhh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCC
Confidence 34556667777776522 3799999999999998877 67999999999999999987 58999999999999999
Q ss_pred cCccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccccccccccccccc
Q 042327 574 FPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSI 653 (911)
Q Consensus 574 lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 653 (911)
+|. .+.+|++|++++|+++.+|.. +++|++|++++| .+..+|. .+++|+.|++++|....+
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l-------- 176 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL-------- 176 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC--------
T ss_pred CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC--------
Confidence 987 678999999999999999975 489999999999 6777875 357899999998754322
Q ss_pred ccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCc
Q 042327 654 LFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKL 733 (911)
Q Consensus 654 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 733 (911)
+ ..+++|+.|+++.|.+..++. ..+.++.|.+.++. ++.++. .+++|+.|+++++ .+
T Consensus 177 --------~---~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~-l~~l~~----~~~~L~~L~Ls~N-~L 233 (622)
T 3g06_A 177 --------P---MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNR-LTSLPA----LPSGLKELIVSGN-RL 233 (622)
T ss_dssp --------C---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSC-CSSCCC----CCTTCCEEECCSS-CC
T ss_pred --------c---ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCc-ccccCC----CCCCCCEEEccCC-cc
Confidence 1 346889999999998876432 34688999998853 444431 2478999999886 45
Q ss_pred cceeeccccccccCCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCccc
Q 042327 734 EELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFA 813 (911)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 813 (911)
+.++ . .+++|+.|+|++| .++.+|. .+++|+.|+|++|. ++.++. .+..++
T Consensus 234 ~~lp----~---------~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~------------~l~~l~ 284 (622)
T 3g06_A 234 TSLP----V---------LPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LTRLPE------------SLIHLS 284 (622)
T ss_dssp SCCC----C---------CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CCSCCG------------GGGGSC
T ss_pred CcCC----C---------CCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CCcCCH------------HHhhcc
Confidence 5443 1 5789999999999 7788877 77999999999974 444433 567889
Q ss_pred ccceeccCCCCccC
Q 042327 814 KLHYLGLVNLPNLR 827 (911)
Q Consensus 814 ~L~~L~L~~~~~L~ 827 (911)
+|+.|+|++|+--.
T Consensus 285 ~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 285 SETTVNLEGNPLSE 298 (622)
T ss_dssp TTCEEECCSCCCCH
T ss_pred ccCEEEecCCCCCC
Confidence 99999999977443
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=2.5e-18 Score=182.50 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=172.9
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCC-Cc
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIK-LK 572 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~ 572 (911)
+...+.+++.+|. ...+++++|++++|.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++|. ++
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 3445556666654 335799999999999998764 7899999999999999999987779999999999999997 88
Q ss_pred cc-CccccCCCCCCEEeecCCCCccc-cccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccc
Q 042327 573 SF-PLGISKLVSLQQLDLSYSSIKEL-PRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLK 650 (911)
Q Consensus 573 ~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 650 (911)
.+ |..+..+++|++|++++|.++.+ |..+.++++|++|++++| .+..+|...++++++|++|++++|....+
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----- 168 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSV----- 168 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEE-----
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccccc-----
Confidence 77 77899999999999999999987 556788999999999999 57788877689999999999999854322
Q ss_pred cccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEccc
Q 042327 651 DSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGC 730 (911)
Q Consensus 651 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 730 (911)
....+..+++|+.|+++.|.+ +......+..+++|+.|+++++
T Consensus 169 ----------~~~~~~~l~~L~~L~l~~n~l---------------------------~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 169 ----------PERAFRGLHSLDRLLLHQNRV---------------------------AHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCC---------------------------CEECTTTTTTCTTCCEEECCSS
T ss_pred ----------CHHHhcCccccCEEECCCCcc---------------------------cccCHhHccCcccccEeeCCCC
Confidence 223466778888888775443 2233345677889999999986
Q ss_pred CCccceeeccccccccCCCCCccCcccEEEeecccc
Q 042327 731 RKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLT 766 (911)
Q Consensus 731 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 766 (911)
.+..+++.... .+++|+.|+|++|+.
T Consensus 212 -~l~~~~~~~~~---------~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 212 -NLSALPTEALA---------PLRALQYLRLNDNPW 237 (285)
T ss_dssp -CCSCCCHHHHT---------TCTTCCEEECCSSCE
T ss_pred -cCCcCCHHHcc---------cCcccCEEeccCCCc
Confidence 46655554444 689999999999853
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.3e-17 Score=190.49 Aligned_cols=238 Identities=16% Similarity=0.087 Sum_probs=172.6
Q ss_pred CCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEEe
Q 042327 532 PTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLN 611 (911)
Q Consensus 532 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~ 611 (911)
..+++|++|++++|.+..+++..|..+++|++|+|++|.++.+++ ++.+++|++|+|++|.++.+|.. ++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 456689999999999999888888999999999999999987664 88999999999999999888743 8899999
Q ss_pred ccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhc
Q 042327 612 LEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISH 691 (911)
Q Consensus 612 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~ 691 (911)
+++| .+..+|. ..+++|++|++++|..... .+..++.+++|+.|+++.|.+
T Consensus 106 L~~N-~l~~~~~---~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~Ls~N~l---------- 156 (487)
T 3oja_A 106 AANN-NISRVSC---SRGQGKKNIYLANNKITML---------------RDLDEGCRSRVQYLDLKLNEI---------- 156 (487)
T ss_dssp CCSS-CCCCEEE---CCCSSCEEEECCSSCCCSG---------------GGBCGGGGSSEEEEECTTSCC----------
T ss_pred CcCC-cCCCCCc---cccCCCCEEECCCCCCCCC---------------CchhhcCCCCCCEEECCCCCC----------
Confidence 9998 5666664 3578899999998754321 233455566677666654332
Q ss_pred cccccceeeEecccCCCCccccCChh-cccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeecccccccc
Q 042327 692 KLRSCTQALFLQSFNDSTSLDVSPLA-DLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDL 770 (911)
Q Consensus 692 ~~~~~l~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 770 (911)
+...+..+. .+++|+.|+++++. +..++... .+++|+.|+|++| .+..+
T Consensus 157 -----------------~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~l~~L~~L~Ls~N-~l~~~ 206 (487)
T 3oja_A 157 -----------------DTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-----------VFAKLKTLDLSSN-KLAFM 206 (487)
T ss_dssp -----------------CEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC-----------CCTTCCEEECCSS-CCCEE
T ss_pred -----------------CCcChHHHhhhCCcccEEecCCCc-cccccccc-----------cCCCCCEEECCCC-CCCCC
Confidence 222223343 57899999998864 55442211 5789999999998 56655
Q ss_pred -cccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCcc-CccCCCCCCCCCccEEeeCC
Q 042327 771 -TFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNL-RSIYWKPLSLPQLKEMKVDG 846 (911)
Q Consensus 771 -~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L-~~i~~~~~~~~~L~~L~l~~ 846 (911)
+.+..+++|+.|+|++|.. ..++. .+..+++|+.|++++++.. ..++.....++.|+.+++..
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l-~~lp~------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKL-VLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCC-CEECT------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHhHcCCCCccEEEecCCcC-cccch------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 4578889999999998643 33322 4667789999999987654 24444455678888887763
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=6.6e-18 Score=181.99 Aligned_cols=239 Identities=13% Similarity=0.054 Sum_probs=184.0
Q ss_pred CccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEeecCCCCccccccccCCccccEEeccc
Q 042327 536 HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEH 614 (911)
Q Consensus 536 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~ 614 (911)
.++.++++.+.+...+...+..+++|++|+|++|.++.++ ..++++++|++|++++|.++.++. +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 4566777777777777777888889999999999999775 689999999999999999998775 88999999999999
Q ss_pred cccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhcccc
Q 042327 615 AEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLR 694 (911)
Q Consensus 615 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~ 694 (911)
| .+..+| ..++|++|++++|..... . ...+++|+.|+++.|.+
T Consensus 90 n-~l~~l~-----~~~~L~~L~l~~n~l~~~---------------~---~~~~~~L~~L~l~~N~l------------- 132 (317)
T 3o53_A 90 N-YVQELL-----VGPSIETLHAANNNISRV---------------S---CSRGQGKKNIYLANNKI------------- 132 (317)
T ss_dssp S-EEEEEE-----ECTTCCEEECCSSCCSEE---------------E---ECCCSSCEEEECCSSCC-------------
T ss_pred C-cccccc-----CCCCcCEEECCCCccCCc---------------C---ccccCCCCEEECCCCCC-------------
Confidence 9 566655 348999999998754322 0 11245566666654433
Q ss_pred ccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeecccccccccccc
Q 042327 695 SCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTFLV 774 (911)
Q Consensus 695 ~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~ 774 (911)
+.+....+..+++|+.|+++++ .+..+.+..... .+++|+.|+|++| .++.++...
T Consensus 133 --------------~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--------~l~~L~~L~L~~N-~l~~~~~~~ 188 (317)
T 3o53_A 133 --------------TMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAA--------SSDTLEHLNLQYN-FIYDVKGQV 188 (317)
T ss_dssp --------------CSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGG--------GTTTCCEEECTTS-CCCEEECCC
T ss_pred --------------CCccchhhhccCCCCEEECCCC-CCCcccHHHHhh--------ccCcCCEEECCCC-cCccccccc
Confidence 3333345667899999999986 455554443321 5789999999999 677777777
Q ss_pred cCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCCCCCC
Q 042327 775 FAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDGCFGL 850 (911)
Q Consensus 775 ~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~C~~L 850 (911)
.+++|+.|+|++|. ++.++. .+..+++|+.|+++++ .++.++..+..+++|+.|++++|+-.
T Consensus 189 ~l~~L~~L~Ls~N~-l~~l~~------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 189 VFAKLKTLDLSSNK-LAFMGP------------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECCSSC-CCEECG------------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccCCEEECCCCc-CCcchh------------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 79999999999964 333322 4667899999999996 67888888888999999999997654
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=1.1e-18 Score=187.75 Aligned_cols=158 Identities=19% Similarity=0.195 Sum_probs=117.7
Q ss_pred ccccceEeecccccccccCC-CCCCCCccEEEccCCCCCC--cChhHH------hcCCcccEEEccCCCCc-ccCccc--
Q 042327 511 EWENVRRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLK--IPNDFF------QYMHSLKVLNLSRIKLK-SFPLGI-- 578 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~------~~l~~L~~L~L~~~~i~-~lp~~i-- 578 (911)
..++++.|++.+|.+ .+|. +... |+.|++++|.+.. +|.... .++++|++|+|++|.++ .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 345678888888888 5543 3332 8888999887643 444321 15899999999999998 678776
Q ss_pred cCCCCCCEEeecCCCCccccccccCC-----ccccEEeccccccccccChhhhcCCccccEEEccccccccccccccccc
Q 042327 579 SKLVSLQQLDLSYSSIKELPRELYAL-----VNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSI 653 (911)
Q Consensus 579 ~~l~~L~~L~L~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 653 (911)
+.+++|++|++++|.++.+|..++.+ ++|++|++++| .+..++...++++++|++|++++|....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------- 187 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG--------- 187 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH---------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc---------
Confidence 88999999999999999888777776 89999999998 5677775558999999999999875321
Q ss_pred ccCCchhHHHhh--cCCCCCceEEEEEcchhhHH
Q 042327 654 LFGGEEVLAEEL--LGLESLEVLTFTLRSVRALQ 685 (911)
Q Consensus 654 ~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~l~ 685 (911)
....+..+ ..+++|+.|+++.|.+..+.
T Consensus 188 ----~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 188 ----ERGLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp ----HHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred ----chHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 11123344 77888999988877776444
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.1e-18 Score=196.87 Aligned_cols=238 Identities=15% Similarity=0.149 Sum_probs=182.6
Q ss_pred ccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEe
Q 042327 511 EWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLD 588 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 588 (911)
.+++++.|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|+|++|.++.+|.. ++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 4568999999999999875 48899999999999999887776 88899999999999999987743 8999999
Q ss_pred ecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhc-C
Q 042327 589 LSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELL-G 667 (911)
Q Consensus 589 L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 667 (911)
+++|.++.+|.. .+++|++|++++| .+..+++..++++++|++|++++|..... .+..+. .
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~l~~~ 167 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV---------------NFAELAAS 167 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEE---------------EGGGGGGG
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCc---------------ChHHHhhh
Confidence 999999988754 5789999999999 55666554489999999999999854321 233443 6
Q ss_pred CCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccC
Q 042327 668 LESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQAT 747 (911)
Q Consensus 668 l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 747 (911)
+++|+.|+++.|.+..+ + ....+++|+.|+++++ .+..+++. ..
T Consensus 168 l~~L~~L~Ls~N~l~~~---------------------------~--~~~~l~~L~~L~Ls~N-~l~~~~~~-~~----- 211 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV---------------------------K--GQVVFAKLKTLDLSSN-KLAFMGPE-FQ----- 211 (487)
T ss_dssp TTTCCEEECTTSCCCEE---------------------------E--CCCCCTTCCEEECCSS-CCCEECGG-GG-----
T ss_pred CCcccEEecCCCccccc---------------------------c--ccccCCCCCEEECCCC-CCCCCCHh-Hc-----
Confidence 78888888875543321 1 2224688999999885 46655544 22
Q ss_pred CCCCccCcccEEEeeccccccccc-ccccCCCccEEEEecCcch-hHHhccCCCCCcccccCCCCcccccceeccCCCCc
Q 042327 748 RQPCVFHGLHTVHIEVCLTLKDLT-FLVFAPNLKYAEILNCPAM-EEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPN 825 (911)
Q Consensus 748 ~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l-~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 825 (911)
.+++|+.|+|++| .+..+| .+..+++|+.|++++|+.. ..++. .+..++.|+.|.+..+..
T Consensus 212 ----~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~------------~~~~l~~L~~l~~~~~~~ 274 (487)
T 3oja_A 212 ----SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD------------FFSKNQRVQTVAKQTVKK 274 (487)
T ss_dssp ----GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHH------------HHTTCHHHHHHHHHHHHH
T ss_pred ----CCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHH------------HHHhCCCCcEEecccccc
Confidence 6889999999998 566665 4778899999999998765 23322 355678888888864433
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=4.3e-17 Score=174.58 Aligned_cols=124 Identities=23% Similarity=0.381 Sum_probs=76.3
Q ss_pred cccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEee
Q 042327 510 REWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDL 589 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 589 (911)
..++++++|++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|+|++|.++.+| .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 3455666666666666666666666666666666666666555 556666666666666666554 4666666666666
Q ss_pred cCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccc
Q 042327 590 SYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 590 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
++|.++.+|. +..+++|++|++++| .+..++. +..+++|++|++++|
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNA 161 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSS
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCC
Confidence 6666666553 556666666666666 3445544 555666666666554
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=1.2e-16 Score=169.19 Aligned_cols=130 Identities=21% Similarity=0.225 Sum_probs=112.9
Q ss_pred cccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEee
Q 042327 510 REWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDL 589 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 589 (911)
..+++++.+++.++.+..+|... .+++++|++++|.+..+++..|..+++|++|+|++|.++.+|.. +.+++|++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 45678899999999998886522 37899999999999988888899999999999999999988755 78999999999
Q ss_pred cCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccc
Q 042327 590 SYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 590 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
++|.++.+|..+..+++|++|++++| .+..+|.+.+.++++|++|++++|..
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCC
Confidence 99999999998899999999999998 67888876789999999999998743
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=4.6e-17 Score=167.72 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=63.1
Q ss_pred CccEEEccCCCCCCcChhHHhcCCcccEEEccCCC-CcccCc-cccCCCCCCEEeecC-CCCccccc-cccCCccccEEe
Q 042327 536 HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIK-LKSFPL-GISKLVSLQQLDLSY-SSIKELPR-ELYALVNLKCLN 611 (911)
Q Consensus 536 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~-~~i~~lp~-~~~~l~~L~~L~ 611 (911)
+|++|++++|.++.+++..|.++++|++|++++|. ++.+|. .+.++++|++|++++ |.++.+|. .+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666666666556666666666666664 665543 456666666666666 66666653 345566666666
Q ss_pred ccccccccccChhhhcCCcccc---EEEcccc
Q 042327 612 LEHAEELITIPQQVISNFSRLH---VLRMYGT 640 (911)
Q Consensus 612 l~~~~~l~~lp~~~i~~l~~L~---~L~l~~~ 640 (911)
+++| .+..+|. +..+++|+ +|++++|
T Consensus 112 l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 112 IFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred CCCC-CCccccc--cccccccccccEEECCCC
Confidence 6666 3455664 55555555 6666554
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.5e-17 Score=196.39 Aligned_cols=322 Identities=16% Similarity=0.125 Sum_probs=156.6
Q ss_pred ccccceEeecccccccccC-----C-CCCCCCccEEEccCCCCCCcC----hhHHhcCCcccEEEccCCCCcccCccccC
Q 042327 511 EWENVRRLSLMQNEITNLK-----E-IPTCPHLLTLFLDNNESLKIP----NDFFQYMHSLKVLNLSRIKLKSFPLGISK 580 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~~~-----~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 580 (911)
.+++|++|++.+|.+.+.. . ...+++|++|++++|.+..+. ...+.++++|++|++++|.+..+|..+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 3455666666655543221 0 124555566666555544222 12234455566666655555555544444
Q ss_pred CCCCCEEeec---------------------------CCCCccccccccCCccccEEecccccccccc-ChhhhcCCccc
Q 042327 581 LVSLQQLDLS---------------------------YSSIKELPRELYALVNLKCLNLEHAEELITI-PQQVISNFSRL 632 (911)
Q Consensus 581 l~~L~~L~L~---------------------------~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l-p~~~i~~l~~L 632 (911)
+++|++|+++ ++....+|..+..+++|++|++++|. +... ....+.++++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCC
Confidence 5555555554 44334444444555555555555553 2111 11223455555
Q ss_pred cEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEE-----------cchhhHHHHHhhccccccceeeE
Q 042327 633 HVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTL-----------RSVRALQLILISHKLRSCTQALF 701 (911)
Q Consensus 633 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~l~~l~~~~~~~~~l~~L~ 701 (911)
++|++.++.. ..........+++|+.|+++. +.+.... +......+++++.|.
T Consensus 321 ~~L~L~~~~~---------------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 321 EVLETRNVIG---------------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG-LIALAQGCQELEYMA 384 (592)
T ss_dssp CEEEEEGGGH---------------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH-HHHHHHHCTTCSEEE
T ss_pred CEEeccCccC---------------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH-HHHHHhhCccCeEEE
Confidence 5555552210 111222234456666666662 2222111 111112234566666
Q ss_pred ecccCCCCccccCChhc-ccccceEEEcc---cCCccceeeccccccccCCCCCccCcccEEEeecccc-ccc--ccccc
Q 042327 702 LQSFNDSTSLDVSPLAD-LKHLYRLRVFG---CRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLT-LKD--LTFLV 774 (911)
Q Consensus 702 l~~~~~~~~~~~~~l~~-l~~L~~L~l~~---~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-l~~--l~~l~ 774 (911)
+ .|+.++...+..+.. +++|+.|++++ |+.++..+.+. + +......+++|++|+|+.|.. +.+ +..++
T Consensus 385 l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-~---~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 385 V-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-G---VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp E-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-H---HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred e-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-H---HHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence 6 334444433333333 66677777763 33444321110 0 000011477888888876643 222 22233
Q ss_pred -cCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCc--cCCCCCCCCCccEEeeCCCCCCC
Q 042327 775 -FAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRS--IYWKPLSLPQLKEMKVDGCFGLK 851 (911)
Q Consensus 775 -~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~--i~~~~~~~~~L~~L~l~~C~~L~ 851 (911)
.+++|+.|+|++|..-..... ....++++|+.|+|++|+ ++. ++.....+|+|+.|++++|+ ++
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~-----------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLM-----------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHH-----------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CC
T ss_pred HhCccceEeeccCCCCCHHHHH-----------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CC
Confidence 478888888887653221111 023567899999999988 443 22223458999999999987 55
Q ss_pred CCCCCC-CCCCCcceEE
Q 042327 852 KLPLKC-NSAQEQTIVV 867 (911)
Q Consensus 852 ~lP~~~-~~~l~~L~~~ 867 (911)
...... ...++.+.+.
T Consensus 527 ~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 527 MTGQDLMQMARPYWNIE 543 (592)
T ss_dssp TTCTTGGGGCCTTEEEE
T ss_pred HHHHHHHHHhCCCcEEE
Confidence 432221 1134555544
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=9.4e-17 Score=165.39 Aligned_cols=91 Identities=20% Similarity=0.395 Sum_probs=73.8
Q ss_pred CCCcChhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEEeecCCC-Cccccc-cccCCccccEEeccccccccccCh
Q 042327 547 SLKIPNDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQLDLSYSS-IKELPR-ELYALVNLKCLNLEHAEELITIPQ 623 (911)
Q Consensus 547 ~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~-i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~ 623 (911)
++.+|. + ..+|++|++++|.++.+|. .++++++|++|++++|. ++.+|. .+.++++|++|++++|+.+..+|.
T Consensus 23 l~~ip~--~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 667776 2 3489999999999998865 68889999999999996 888876 577899999999998447788887
Q ss_pred hhhcCCccccEEEccccc
Q 042327 624 QVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 624 ~~i~~l~~L~~L~l~~~~ 641 (911)
..+.++++|++|++++|.
T Consensus 99 ~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTG 116 (239)
T ss_dssp TSEECCTTCCEEEEEEEC
T ss_pred HHhCCCCCCCEEeCCCCC
Confidence 667888888888888764
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=3.6e-18 Score=194.92 Aligned_cols=285 Identities=18% Similarity=0.136 Sum_probs=158.0
Q ss_pred CccEEEccCCCCCCcC----hhHHhcCCcccEEEccCCCCccc-Ccc-----ccCCCCCCEEeecCCCCcc-----cccc
Q 042327 536 HLLTLFLDNNESLKIP----NDFFQYMHSLKVLNLSRIKLKSF-PLG-----ISKLVSLQQLDLSYSSIKE-----LPRE 600 (911)
Q Consensus 536 ~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~i~~l-p~~-----i~~l~~L~~L~L~~~~i~~-----lp~~ 600 (911)
+|++|++++|.+.... +..+..+++|++|+|++|.++.. +.. ...+++|++|++++|+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4555555555544211 23345555555555555555421 111 1123455555555555542 3444
Q ss_pred ccCCccccEEeccccccccccChhhhc-----CCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEE
Q 042327 601 LYALVNLKCLNLEHAEELITIPQQVIS-----NFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLT 675 (911)
Q Consensus 601 ~~~l~~L~~L~l~~~~~l~~lp~~~i~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 675 (911)
+..+++|++|++++|. +...+...+. .+++|++|++++|..... ........+..+++|+.|+
T Consensus 166 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-----------~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 166 LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-----------NCRDLCGIVASKASLRELA 233 (461)
T ss_dssp HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-----------HHHHHHHHHHHCTTCCEEE
T ss_pred HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-----------HHHHHHHHHHhCCCccEEe
Confidence 4455566666666553 2221111111 244566666655532210 0112456677889999999
Q ss_pred EEEcchhhHHH--HHhh-ccccccceeeEecccCCCCcccc----CChhcccccceEEEcccCCccceeeccccccccCC
Q 042327 676 FTLRSVRALQL--ILIS-HKLRSCTQALFLQSFNDSTSLDV----SPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATR 748 (911)
Q Consensus 676 l~~~~~~~l~~--l~~~-~~~~~~l~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 748 (911)
++.|.+..... +... ....+.++.|++++| .++.... ..+..+++|+.|+++++. +....+..... ..
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~--~l- 308 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCE--TL- 308 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHH--HH-
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHH--Hh-
Confidence 99887765332 2111 123568899999887 3444221 235568899999998863 43222111110 00
Q ss_pred CCCccCcccEEEeecccccccc------cccccCCCccEEEEecCcchhHHhccCCCCCcccccCCC-CcccccceeccC
Q 042327 749 QPCVFHGLHTVHIEVCLTLKDL------TFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNL-NPFAKLHYLGLV 821 (911)
Q Consensus 749 ~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~-~~~~~L~~L~L~ 821 (911)
....++|+.|+|++|. +... ..+..+++|+.|+|++|. +.+.... .+...+ ...++|+.|+++
T Consensus 309 -~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~-------~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 309 -LEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVR-------ELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp -TSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHH-------HHHHHHTSTTCCCCEEECT
T ss_pred -ccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHH-------HHHHHHcCCCCceEEEECC
Confidence 0034689999999994 5432 235678999999999974 4433110 000011 126799999999
Q ss_pred CCCccC-----ccCCCCCCCCCccEEeeCCCC
Q 042327 822 NLPNLR-----SIYWKPLSLPQLKEMKVDGCF 848 (911)
Q Consensus 822 ~~~~L~-----~i~~~~~~~~~L~~L~l~~C~ 848 (911)
+|. ++ .++.....+++|++|++++|+
T Consensus 379 ~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 379 DCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 975 54 455455568999999999974
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=3.1e-16 Score=164.71 Aligned_cols=126 Identities=24% Similarity=0.366 Sum_probs=93.5
Q ss_pred cceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCcc-ccCCCCCCEEeecCC
Q 042327 514 NVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLG-ISKLVSLQQLDLSYS 592 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 592 (911)
..+.++++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|.. +.++++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4567777777777766421 25788888888888888776677888888888888888877655 367888888888888
Q ss_pred CCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEccccc
Q 042327 593 SIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 593 ~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 641 (911)
.++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++++|.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCc
Confidence 88877654 466788888888887 5666766657778888888887764
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=6e-17 Score=173.46 Aligned_cols=208 Identities=21% Similarity=0.304 Sum_probs=156.1
Q ss_pred ceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCC
Q 042327 515 VRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 515 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i 594 (911)
+..+.+..+.+........+++|++|++++|.+..++. +..+++|++|++++|.++.+|. +..+++|++|++++|.+
T Consensus 21 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence 33344555555554455678899999999999888873 7889999999999999998887 99999999999999999
Q ss_pred ccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceE
Q 042327 595 KELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVL 674 (911)
Q Consensus 595 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 674 (911)
+.+| .+..+++|++|++++| .+..+|. +..+++|++|++++|..... ..+..+++|+.|
T Consensus 98 ~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~-----------------~~l~~l~~L~~L 156 (308)
T 1h6u_A 98 KNVS-AIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNI-----------------SPLAGLTNLQYL 156 (308)
T ss_dssp SCCG-GGTTCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------GGGGGCTTCCEE
T ss_pred CCch-hhcCCCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcC-----------------ccccCCCCccEE
Confidence 9887 6889999999999999 5677775 89999999999998754321 116667777777
Q ss_pred EEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccC
Q 042327 675 TFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFH 754 (911)
Q Consensus 675 ~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~ 754 (911)
+++.|.+. .++ .+..+++|+.|+++++. +..+.+ .. .++
T Consensus 157 ~l~~n~l~---------------------------~~~--~l~~l~~L~~L~l~~n~-l~~~~~--l~---------~l~ 195 (308)
T 1h6u_A 157 SIGNAQVS---------------------------DLT--PLANLSKLTTLKADDNK-ISDISP--LA---------SLP 195 (308)
T ss_dssp ECCSSCCC---------------------------CCG--GGTTCTTCCEEECCSSC-CCCCGG--GG---------GCT
T ss_pred EccCCcCC---------------------------CCh--hhcCCCCCCEEECCCCc-cCcChh--hc---------CCC
Confidence 76643322 121 25566788888887753 444332 22 577
Q ss_pred cccEEEeecccccccccccccCCCccEEEEecCc
Q 042327 755 GLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCP 788 (911)
Q Consensus 755 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~ 788 (911)
+|+.|+|++| .+..++.+..+++|+.|++++|+
T Consensus 196 ~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 196 NLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 8888888888 56666677788888888888764
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=6.2e-18 Score=181.74 Aligned_cols=245 Identities=20% Similarity=0.207 Sum_probs=169.7
Q ss_pred CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc--ccCcccc-------CCCCCCEEeecCCCCc-ccccc
Q 042327 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK--SFPLGIS-------KLVSLQQLDLSYSSIK-ELPRE 600 (911)
Q Consensus 531 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~i~-~lp~~ 600 (911)
+...++|+.|++++|.+ .+|..+... |++|+|++|.++ .+|..+. ++++|++|++++|.++ .+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34567899999999999 888875543 899999999886 4676665 7899999999999998 68887
Q ss_pred c--cCCccccEEeccccccccccChhhhcCC-----ccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCce
Q 042327 601 L--YALVNLKCLNLEHAEELITIPQQVISNF-----SRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEV 673 (911)
Q Consensus 601 ~--~~l~~L~~L~l~~~~~l~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 673 (911)
+ ..+++|++|++++| .+..+|.. ++.+ ++|++|++++|..... .+..+..+++|+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF---------------SCEQVRVFPALST 177 (312)
T ss_dssp SSSCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC---------------CTTTCCCCSSCCE
T ss_pred HHHhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccc---------------hHHHhccCCCCCE
Confidence 6 88999999999999 56666754 6666 8999999998854322 3345778888999
Q ss_pred EEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCcccee---eccccccccCCCC
Q 042327 674 LTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELK---MDYKRLVQATRQP 750 (911)
Q Consensus 674 L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~---~~~~~~~~~~~~~ 750 (911)
|+++.|.+.....+... ..+..+++|+.|+++++. ++.+. .....
T Consensus 178 L~Ls~N~l~~~~~~~~~-----------------------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~-------- 225 (312)
T 1wwl_A 178 LDLSDNPELGERGLISA-----------------------LCPLKFPTLQVLALRNAG-METPSGVCSALAA-------- 225 (312)
T ss_dssp EECCSCTTCHHHHHHHH-----------------------SCTTSCTTCCEEECTTSC-CCCHHHHHHHHHH--------
T ss_pred EECCCCCcCcchHHHHH-----------------------HHhccCCCCCEEECCCCc-CcchHHHHHHHHh--------
Confidence 98887775432111100 012455777788877753 43221 11111
Q ss_pred CccCcccEEEeecccccccc---cccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccC
Q 042327 751 CVFHGLHTVHIEVCLTLKDL---TFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLR 827 (911)
Q Consensus 751 ~~l~~L~~L~L~~c~~l~~l---~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 827 (911)
.+++|+.|+|++| .+... +.+..+++|+.|+|++|. ++.++. .+. ++|+.|+|+++ .++
T Consensus 226 -~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~--~~L~~L~Ls~N-~l~ 287 (312)
T 1wwl_A 226 -ARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK------------GLP--AKLSVLDLSYN-RLD 287 (312)
T ss_dssp -TTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS------------SCC--SEEEEEECCSS-CCC
T ss_pred -cCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhh------------hcc--CCceEEECCCC-CCC
Confidence 4578888888887 44442 235557888888888754 333321 222 78888888874 566
Q ss_pred ccCCCCCCCCCccEEeeCCC
Q 042327 828 SIYWKPLSLPQLKEMKVDGC 847 (911)
Q Consensus 828 ~i~~~~~~~~~L~~L~l~~C 847 (911)
.+|. +..+++|+.|+++++
T Consensus 288 ~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 288 RNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SCCC-TTTSCEEEEEECTTC
T ss_pred CChh-HhhCCCCCEEeccCC
Confidence 6655 667888888888875
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1e-16 Score=168.59 Aligned_cols=131 Identities=26% Similarity=0.397 Sum_probs=100.0
Q ss_pred CccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCcc-ccCCCCCCE
Q 042327 508 DVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLG-ISKLVSLQQ 586 (911)
Q Consensus 508 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~ 586 (911)
....+++++.|.+.++.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++|.++.+|.. ++++++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34456778888888888887777788888888888888777764 367788888888888888876543 577888888
Q ss_pred EeecCCCCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEccccc
Q 042327 587 LDLSYSSIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 587 L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 641 (911)
|++++|+++.+|.. +.++++|++|++++| .+..+|...+.++++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC
Confidence 88888888877655 567888888888887 5667776656778888888887763
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=4.3e-16 Score=164.33 Aligned_cols=126 Identities=26% Similarity=0.313 Sum_probs=72.9
Q ss_pred ccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEee
Q 042327 513 ENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDL 589 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L 589 (911)
+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|+|++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666665553 3555666666666666666665555566666666666666665443 44556666666666
Q ss_pred cCCCCccccc-cccCCccccEEeccccccccc--cChhhhcCCccccEEEcccc
Q 042327 590 SYSSIKELPR-ELYALVNLKCLNLEHAEELIT--IPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 590 ~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~ 640 (911)
++|.++.++. .+.++++|++|++++| .+.. +|.. +.++++|++|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCC
Confidence 6666665543 3555666666666665 3333 3443 556666666666655
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=4.3e-16 Score=164.31 Aligned_cols=219 Identities=17% Similarity=0.152 Sum_probs=161.3
Q ss_pred ecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEEeecCCCCccc
Q 042327 519 SLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQLDLSYSSIKEL 597 (911)
Q Consensus 519 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~i~~l 597 (911)
...+..+..+|.- -.++|++|++++|.+..+++..|.++++|++|++++|.++.++. .+.++++|++|++++|.++.+
T Consensus 13 ~c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 13 QCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp ECTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 3444445555541 12579999999999999998779999999999999999998764 789999999999999999987
Q ss_pred c-ccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEE
Q 042327 598 P-RELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTF 676 (911)
Q Consensus 598 p-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 676 (911)
+ ..+.++++|++|++++| .+..++...++++++|++|++++|..... ..+..+..+++|+.|++
T Consensus 92 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF--------------KLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------CCCGGGGGCTTCCEEEC
T ss_pred ChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCcccee--------------cCchhhccCCCCCEEEC
Confidence 6 56888999999999999 56777764589999999999999854321 13456788999999999
Q ss_pred EEcchhhHHH--HHhhccccccce-eeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCcc
Q 042327 677 TLRSVRALQL--ILISHKLRSCTQ-ALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVF 753 (911)
Q Consensus 677 ~~~~~~~l~~--l~~~~~~~~~l~-~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l 753 (911)
+.|.+..+.. +.... ....+. .++++++ .++.++...+. ..+|+.|+++++. ++.++..... .+
T Consensus 157 s~N~l~~~~~~~~~~l~-~L~~l~l~L~ls~n-~l~~~~~~~~~-~~~L~~L~L~~n~-l~~~~~~~~~---------~l 223 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLN-PMNFIQPGAFK-EIRLKELALDTNQ-LKSVPDGIFD---------RL 223 (276)
T ss_dssp CSSCCCEECGGGGHHHH-TCTTCCEEEECCSS-CCCEECTTSSC-SCCEEEEECCSSC-CSCCCTTTTT---------TC
T ss_pred CCCCCCcCCHHHhhhhh-hccccceeeecCCC-cccccCccccC-CCcccEEECCCCc-eeecCHhHhc---------cc
Confidence 9987754321 11111 111222 6777764 34454433333 3489999999864 6665544333 68
Q ss_pred CcccEEEeecccc
Q 042327 754 HGLHTVHIEVCLT 766 (911)
Q Consensus 754 ~~L~~L~L~~c~~ 766 (911)
++|+.|+|++|+.
T Consensus 224 ~~L~~L~l~~N~~ 236 (276)
T 2z62_A 224 TSLQKIWLHTNPW 236 (276)
T ss_dssp CSCCEEECCSSCB
T ss_pred ccccEEEccCCcc
Confidence 9999999999853
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=1.1e-17 Score=190.89 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=33.5
Q ss_pred CCcccccceeccCCCCccCccCC-C----C-CCCCCccEEeeCCCCCCC-----CCCCCCCCCCCcceEEEcccc
Q 042327 809 LNPFAKLHYLGLVNLPNLRSIYW-K----P-LSLPQLKEMKVDGCFGLK-----KLPLKCNSAQEQTIVVHGDKT 872 (911)
Q Consensus 809 ~~~~~~L~~L~L~~~~~L~~i~~-~----~-~~~~~L~~L~l~~C~~L~-----~lP~~~~~~l~~L~~~~~~~~ 872 (911)
+..+++|+.|+|++|. +..... . . ...++|++|++++| .++ .+|.... .+++|..++...+
T Consensus 337 l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~-~~~~L~~L~l~~N 408 (461)
T 1z7x_W 337 LAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLL-ANHSLRELDLSNN 408 (461)
T ss_dssp HHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHH-HCCCCCEEECCSS
T ss_pred HhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHH-hCCCccEEECCCC
Confidence 3445788888888763 433211 1 1 12578888888887 455 4454321 1345555555433
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=5.9e-17 Score=191.22 Aligned_cols=318 Identities=13% Similarity=0.092 Sum_probs=205.7
Q ss_pred cceEeecccccccc---cCC-CCCCCCccEEEccCCCCCCcC----hhHHhcCCcccEEEccCCCCc-----ccCccccC
Q 042327 514 NVRRLSLMQNEITN---LKE-IPTCPHLLTLFLDNNESLKIP----NDFFQYMHSLKVLNLSRIKLK-----SFPLGISK 580 (911)
Q Consensus 514 ~l~~L~l~~~~~~~---~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~ 580 (911)
+|++|++.++.... ++. ...+++|++|++++|.+.... ..++..+++|++|++++|.++ .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 48999998775211 222 247899999999999765543 234678999999999999886 34556678
Q ss_pred CCCCCEEeecCCCCccccccccCCccccEEeccccccc--------------------------cccChhhhcCCccccE
Q 042327 581 LVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEEL--------------------------ITIPQQVISNFSRLHV 634 (911)
Q Consensus 581 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l--------------------------~~lp~~~i~~l~~L~~ 634 (911)
+++|++|++++|.+..+|..+.++++|++|+++++... ..+|.. +..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCCCcE
Confidence 99999999999999888888888888888888743211 122221 345556666
Q ss_pred EEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecc----------
Q 042327 635 LRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQS---------- 704 (911)
Q Consensus 635 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~---------- 704 (911)
|++++|... .......+..+++|+.|+++ +.+.. ..+......+++++.|++.+
T Consensus 298 L~Ls~~~l~--------------~~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 298 LDLLYALLE--------------TEDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp EEETTCCCC--------------HHHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred EecCCCcCC--------------HHHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 666554311 12233446888999999998 44332 12222223356899999995
Q ss_pred cCCCCccccCC-hhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeec---cccccccc-------cc
Q 042327 705 FNDSTSLDVSP-LADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEV---CLTLKDLT-------FL 773 (911)
Q Consensus 705 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~---c~~l~~l~-------~l 773 (911)
|+.++...+.. ...+++|++|++ .|+.+....+..... .+++|+.|+|++ |..+++.| .+
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~--------~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGT--------YLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHH--------HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred cCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHh--------hCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 66665544333 345899999999 456665433333221 488999999985 44666542 15
Q ss_pred ccCCCccEEEEecCcc-hhHHhccCCCCCcccccCCCCcccccceeccCCCCccCc--cCCCCCCCCCccEEeeCCCCCC
Q 042327 774 VFAPNLKYAEILNCPA-MEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRS--IYWKPLSLPQLKEMKVDGCFGL 850 (911)
Q Consensus 774 ~~l~~L~~L~L~~c~~-l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~--i~~~~~~~~~L~~L~l~~C~~L 850 (911)
..+++|+.|+|++|.. +.+.... . -...+++|+.|+|++|. +.. ++.....+++|+.|++++|+ +
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~-------~---~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l 500 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLS-------Y---IGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-F 500 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHH-------H---HHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-C
T ss_pred HhCCCCCEEEEecCCCCccHHHHH-------H---HHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-C
Confidence 5699999999988763 2221110 0 12347899999999876 433 22223568999999999998 5
Q ss_pred CC--CCCCC--CCCCCcceEEEc
Q 042327 851 KK--LPLKC--NSAQEQTIVVHG 869 (911)
Q Consensus 851 ~~--lP~~~--~~~l~~L~~~~~ 869 (911)
+. +|... ...++.|.+..|
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESC
T ss_pred cHHHHHHHHHhcCccCeeECcCC
Confidence 43 23211 123555555544
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=1.4e-16 Score=173.50 Aligned_cols=224 Identities=18% Similarity=0.160 Sum_probs=124.2
Q ss_pred ccEEEccCCCCCCcChhHHhcC--CcccEEEccCCCCcccCccccCCCCCCEEeecCCCCcc--ccccccCCccccEEec
Q 042327 537 LLTLFLDNNESLKIPNDFFQYM--HSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKE--LPRELYALVNLKCLNL 612 (911)
Q Consensus 537 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~l 612 (911)
++.++++++.+. +..+..+ +++++|++++|.+...+..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 455555555433 3345555 66777777777666555556667777777777776652 6666667777777777
Q ss_pred cccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEc-chhhHHHHHhhc
Q 042327 613 EHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLR-SVRALQLILISH 691 (911)
Q Consensus 613 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~l~~~~ 691 (911)
++|......|.. ++++++|++|++++|.... .......+..+++|+.|+++.| .+.....
T Consensus 126 ~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~-------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----- 186 (336)
T 2ast_B 126 EGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS-------------EFALQTLLSSCSRLDELNLSWCFDFTEKHV----- 186 (336)
T ss_dssp TTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC-------------HHHHHHHHHHCTTCCEEECCCCTTCCHHHH-----
T ss_pred cCcccCHHHHHH-HhcCCCCCEEECCCCCCCC-------------HHHHHHHHhcCCCCCEEcCCCCCCcChHHH-----
Confidence 777422233433 6667777777777663211 1123334556666766666655 4332110
Q ss_pred cccccceeeEecccCCCCccccCChhccc-ccceEEEcccC-Cccc-eeeccccccccCCCCCccCcccEEEeecccccc
Q 042327 692 KLRSCTQALFLQSFNDSTSLDVSPLADLK-HLYRLRVFGCR-KLEE-LKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLK 768 (911)
Q Consensus 692 ~~~~~l~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~-~l~~-l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 768 (911)
...+..++ +|++|++++|. .+.. -.+.... .+++|+.|+|++|..++
T Consensus 187 ---------------------~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~---------~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 187 ---------------------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR---------RCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp ---------------------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH---------HCTTCSEEECTTCTTCC
T ss_pred ---------------------HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh---------hCCCCCEEeCCCCCcCC
Confidence 01123345 66666666653 2221 0111111 46677777777775443
Q ss_pred c--ccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCC
Q 042327 769 D--LTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNL 823 (911)
Q Consensus 769 ~--l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 823 (911)
+ ++.+..+++|+.|+|++|..+.... ...+..+++|+.|++++|
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----------~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCYDIIPET-----------LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCTTCCGGG-----------GGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCCCEeeCCCCCCCCHHH-----------HHHHhcCCCCCEEeccCc
Confidence 2 3456667777777777765332210 013455777777777776
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.3e-15 Score=159.93 Aligned_cols=146 Identities=26% Similarity=0.443 Sum_probs=125.7
Q ss_pred EEEEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc
Q 042327 495 FLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK 572 (911)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 572 (911)
.+...+..++.+|.. -.+++++|++++|.+..++. +..+++|++|++++|.+..++...|..+++|++|++++|.++
T Consensus 20 ~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp EEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC
T ss_pred EEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC
Confidence 455556666666642 23689999999999998864 889999999999999999999998999999999999999999
Q ss_pred ccCc-cccCCCCCCEEeecCCCCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccc
Q 042327 573 SFPL-GISKLVSLQQLDLSYSSIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 573 ~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
.+|. .+.++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++++|..
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcC
Confidence 8865 468999999999999999988754 678999999999999 67888887789999999999998743
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.8e-15 Score=165.33 Aligned_cols=238 Identities=15% Similarity=0.134 Sum_probs=170.9
Q ss_pred cEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEEeecCCCCc-ccccc-ccCCccccEEeccc
Q 042327 538 LTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQLDLSYSSIK-ELPRE-LYALVNLKCLNLEH 614 (911)
Q Consensus 538 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~i~-~lp~~-~~~l~~L~~L~l~~ 614 (911)
++++.++++++.+|.++ .+++++|+|++|.|+.+|. .+.++++|++|+|++|.+. .+|.. +.++++|+.+...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888999999874 3679999999999999986 5799999999999999875 56654 56788888765555
Q ss_pred cccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhcccc
Q 042327 615 AEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLR 694 (911)
Q Consensus 615 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~ 694 (911)
++.+..+|++++..+++|++|++++|..... ....+....++..|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~---------------~~~~~~~~~~l~~l~l------------------ 135 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHL---------------PDVHKIHSLQKVLLDI------------------ 135 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSC---------------CCCTTCCBSSCEEEEE------------------
T ss_pred CCcccccCchhhhhccccccccccccccccC---------------Cchhhcccchhhhhhh------------------
Confidence 5578888877789999999999998754321 0001112223333433
Q ss_pred ccceeeEecccCCCCccccCChhcc-cccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeecccccccccc-
Q 042327 695 SCTQALFLQSFNDSTSLDVSPLADL-KHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLTF- 772 (911)
Q Consensus 695 ~~l~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~- 772 (911)
.++..+..++...+..+ ..++.|+++++ .++.++.... ...+|+.|.+.++..++.+|.
T Consensus 136 --------~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 136 --------QDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAF----------NGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp --------ESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSS----------TTEEEEEEECTTCTTCCCCCTT
T ss_pred --------ccccccccccccchhhcchhhhhhccccc-cccCCChhhc----------cccchhHHhhccCCcccCCCHH
Confidence 33334444444444444 36788888874 5666544432 356799999988778888874
Q ss_pred -cccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCCCCCCCCccEEeeCC
Q 042327 773 -LVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWKPLSLPQLKEMKVDG 846 (911)
Q Consensus 773 -l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~l~~ 846 (911)
+..+++|+.|+|++| .++.+ ....|.+|+.|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 197 ~f~~l~~L~~LdLs~N-~l~~l--------------p~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 197 VFHGASGPVILDISRT-RIHSL--------------PSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTTTEECCSEEECTTS-CCCCC--------------CSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred HhccCcccchhhcCCC-CcCcc--------------ChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 788999999999986 45544 234577888888888888888884 66789999999865
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.7e-15 Score=165.52 Aligned_cols=238 Identities=15% Similarity=0.134 Sum_probs=175.0
Q ss_pred eEeecccccccccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc-ccCc-cccCCCCCCE-EeecC
Q 042327 516 RRLSLMQNEITNLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK-SFPL-GISKLVSLQQ-LDLSY 591 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~-~i~~l~~L~~-L~L~~ 591 (911)
+.+..+++.++.+|. + .++++.|++++|.++.+|++.|.++++|++|+|++|.+. .+|. .+.++++|+. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 457777888888875 3 368999999999999999988999999999999999875 4654 5788988775 66677
Q ss_pred CCCccccc-cccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCC-C
Q 042327 592 SSIKELPR-ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGL-E 669 (911)
Q Consensus 592 ~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~ 669 (911)
|+++.+|. .+..+++|++|++++| .+..+|...+....++..|++.++..... .....+..+ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~--------------l~~~~f~~~~~ 154 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT--------------IERNSFVGLSF 154 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCE--------------ECTTSSTTSBS
T ss_pred CcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccc--------------ccccchhhcch
Confidence 89998854 5678999999999998 67778775466677788888876422210 011122222 2
Q ss_pred CCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCC
Q 042327 670 SLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQ 749 (911)
Q Consensus 670 ~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 749 (911)
.++.|+++.|. ++.++...+ ...+|+.|.+.+++.++.++...+.
T Consensus 155 ~l~~L~L~~N~---------------------------i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~------- 199 (350)
T 4ay9_X 155 ESVILWLNKNG---------------------------IQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFH------- 199 (350)
T ss_dssp SCEEEECCSSC---------------------------CCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTT-------
T ss_pred hhhhhcccccc---------------------------ccCCChhhc-cccchhHHhhccCCcccCCCHHHhc-------
Confidence 35555554333 333332333 3468999999988889888766554
Q ss_pred CCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCC
Q 042327 750 PCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVN 822 (911)
Q Consensus 750 ~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 822 (911)
.+++|+.|+|++| .++.+|. ..+.+|+.|.+.+|..++.++ .+..|++|+.+++.+
T Consensus 200 --~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l~~~~l~~lP-------------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 200 --GASGPVILDISRT-RIHSLPS-YGLENLKKLRARSTYNLKKLP-------------TLEKLVALMEASLTY 255 (350)
T ss_dssp --TEECCSEEECTTS-CCCCCCS-SSCTTCCEEECTTCTTCCCCC-------------CTTTCCSCCEEECSC
T ss_pred --cCcccchhhcCCC-CcCccCh-hhhccchHhhhccCCCcCcCC-------------CchhCcChhhCcCCC
Confidence 7899999999999 7888875 447888999988887776553 367789999999875
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1.1e-15 Score=160.55 Aligned_cols=170 Identities=25% Similarity=0.387 Sum_probs=145.7
Q ss_pred EEEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc
Q 042327 495 FLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF 574 (911)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 574 (911)
.+...+..+..++.+..++++++|++++|.+..++.+..+++|++|++++|.+..+++..|..+++|++|++++|.++.+
T Consensus 45 ~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 124 (272)
T 3rfs_A 45 QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124 (272)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred eeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc
Confidence 34455666777778888999999999999999988899999999999999999999998899999999999999999988
Q ss_pred Ccc-ccCCCCCCEEeecCCCCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccc
Q 042327 575 PLG-ISKLVSLQQLDLSYSSIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDS 652 (911)
Q Consensus 575 p~~-i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 652 (911)
|.. ++++++|++|++++|.++.+|.. +.++++|++|++++| .+..+|...++++++|++|++++|.....
T Consensus 125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------- 196 (272)
T 3rfs_A 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSV------- 196 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC-------
T ss_pred CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCcc-------
Confidence 654 78999999999999999988866 578999999999999 57788877689999999999999854322
Q ss_pred cccCCchhHHHhhcCCCCCceEEEEEcc
Q 042327 653 ILFGGEEVLAEELLGLESLEVLTFTLRS 680 (911)
Q Consensus 653 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 680 (911)
....+..+++|+.|+++.|.
T Consensus 197 --------~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 197 --------PDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp --------CTTTTTTCTTCCEEECCSSC
T ss_pred --------CHHHHhCCcCCCEEEccCCC
Confidence 22346778889988887654
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=1.8e-15 Score=160.20 Aligned_cols=200 Identities=21% Similarity=0.224 Sum_probs=152.1
Q ss_pred CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCCCccccccccCCccccE
Q 042327 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSSIKELPRELYALVNLKC 609 (911)
Q Consensus 531 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~ 609 (911)
+.++++++.++++++.++.+|..+ .+.|++|+|++|.++.+ |..+.++++|++|++++|.++.+|.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 456789999999999999999874 36899999999999976 56799999999999999999999865 78999999
Q ss_pred EeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHh
Q 042327 610 LNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILI 689 (911)
Q Consensus 610 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~ 689 (911)
|++++| .+..+|.. +.++++|++|++++|....+ ....+..+++|+.|+++.|.
T Consensus 82 L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l---------------~~~~~~~l~~L~~L~L~~N~--------- 135 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSL---------------PLGALRGLGELQELYLKGNE--------- 135 (290)
T ss_dssp EECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCC---------------CSSTTTTCTTCCEEECTTSC---------
T ss_pred EECCCC-cCCcCchh-hccCCCCCEEECCCCcCccc---------------CHHHHcCCCCCCEEECCCCC---------
Confidence 999999 67889875 78999999999998754322 22345666777777665333
Q ss_pred hccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccc
Q 042327 690 SHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKD 769 (911)
Q Consensus 690 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 769 (911)
++.++...+..+++|+.|+++++ .++.++..... .+++|+.|+|++| .++.
T Consensus 136 ------------------l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~---------~l~~L~~L~L~~N-~l~~ 186 (290)
T 1p9a_G 136 ------------------LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLN---------GLENLDTLLLQEN-SLYT 186 (290)
T ss_dssp ------------------CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTT---------TCTTCCEEECCSS-CCCC
T ss_pred ------------------CCccChhhcccccCCCEEECCCC-cCCccCHHHhc---------CcCCCCEEECCCC-cCCc
Confidence 23333345567788888888775 46655544333 5788888888888 5666
Q ss_pred ccc-cccCCCccEEEEecCcc
Q 042327 770 LTF-LVFAPNLKYAEILNCPA 789 (911)
Q Consensus 770 l~~-l~~l~~L~~L~L~~c~~ 789 (911)
+|. +..+++|+.|+|.+|+.
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCB
T ss_pred cChhhcccccCCeEEeCCCCc
Confidence 653 55667888888887653
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.3e-16 Score=173.65 Aligned_cols=220 Identities=15% Similarity=0.111 Sum_probs=134.1
Q ss_pred ceEeecccccccccCCCCCC--CCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc--cCccccCCCCCCEEeec
Q 042327 515 VRRLSLMQNEITNLKEIPTC--PHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS--FPLGISKLVSLQQLDLS 590 (911)
Q Consensus 515 l~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~ 590 (911)
+++++++++.+.. ..+..+ ++++.|++++|.+...++. +..+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4566666665442 113333 6788888888876666655 3457888888888887762 67777888888888888
Q ss_pred CCCCc-cccccccCCccccEEeccccccccc--cChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcC
Q 042327 591 YSSIK-ELPRELYALVNLKCLNLEHAEELIT--IPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLG 667 (911)
Q Consensus 591 ~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 667 (911)
+|.++ ..|..+.++++|++|++++|..++. +|.. +.++++|++|++++|.... .......+..
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~-------------~~~~~~~~~~ 192 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFT-------------EKHVQVAVAH 192 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCC-------------HHHHHHHHHH
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcC-------------hHHHHHHHHh
Confidence 88777 5667777788888888888754442 4443 6778888888888762211 1223455667
Q ss_pred CC-CCceEEEEEcch----hhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeecccc
Q 042327 668 LE-SLEVLTFTLRSV----RALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKR 742 (911)
Q Consensus 668 l~-~L~~L~l~~~~~----~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 742 (911)
++ +|+.|+++.|.. ..+.. .+..+++|+.|++++|..++...+....
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~----------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLST----------------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHH----------------------------HHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred cccCCCEEEeCCCcccCCHHHHHH----------------------------HHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 77 888888776632 11211 1223455555666555433322222222
Q ss_pred ccccCCCCCccCcccEEEeeccccccc--ccccccCCCccEEEEecC
Q 042327 743 LVQATRQPCVFHGLHTVHIEVCLTLKD--LTFLVFAPNLKYAEILNC 787 (911)
Q Consensus 743 ~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c 787 (911)
.+++|+.|+|++|..+.+ +..+..+++|+.|+|++|
T Consensus 245 ---------~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 ---------QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ---------GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ---------CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 456666666666643322 223555666666666665
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=2.3e-16 Score=186.27 Aligned_cols=302 Identities=14% Similarity=0.152 Sum_probs=161.6
Q ss_pred ccccceEeecccccccc-----cCCC-CCCCCccEEEccCCCCCCcChh----HHhcCCcccEEEccCC-CCcccCcccc
Q 042327 511 EWENVRRLSLMQNEITN-----LKEI-PTCPHLLTLFLDNNESLKIPND----FFQYMHSLKVLNLSRI-KLKSFPLGIS 579 (911)
Q Consensus 511 ~~~~l~~L~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~L~~~-~i~~lp~~i~ 579 (911)
.+++|++|++.+|.+.+ ++.+ ..+++|++|++++|. ..+... ++..+++|++|++++| .++.+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 56788888888877554 2222 367788888888875 233322 2345688888888887 5556666667
Q ss_pred CCCCCCEEeecCCC-------Ccc------------------------ccccccCCccccEEeccccccccc-cChhhhc
Q 042327 580 KLVSLQQLDLSYSS-------IKE------------------------LPRELYALVNLKCLNLEHAEELIT-IPQQVIS 627 (911)
Q Consensus 580 ~l~~L~~L~L~~~~-------i~~------------------------lp~~~~~l~~L~~L~l~~~~~l~~-lp~~~i~ 627 (911)
++++|++|+++.+. +.. +|..+..+++|++|++++|. +.. .....+.
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~ 311 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLC 311 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHT
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHh
Confidence 77777777754432 112 33333345556666665553 221 1112234
Q ss_pred CCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEE---------cchhhHHHHHhhccccccce
Q 042327 628 NFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTL---------RSVRALQLILISHKLRSCTQ 698 (911)
Q Consensus 628 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~---------~~~~~l~~l~~~~~~~~~l~ 698 (911)
++++|++|++.+|.. ......-...+++|+.|++.. +.+.... +......+++++
T Consensus 312 ~~~~L~~L~l~~~~~---------------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~-l~~l~~~~~~L~ 375 (594)
T 2p1m_B 312 QCPKLQRLWVLDYIE---------------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG-LVSVSMGCPKLE 375 (594)
T ss_dssp TCTTCCEEEEEGGGH---------------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH-HHHHHHHCTTCC
T ss_pred cCCCcCEEeCcCccC---------------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH-HHHHHHhchhHH
Confidence 556666666655411 111111222356666666632 1221111 111111134555
Q ss_pred eeEecccCCCCccccCChh-cccccceEEEc-----ccCCccceeeccccccccCCCCCccCcccEEEeeccccccc--c
Q 042327 699 ALFLQSFNDSTSLDVSPLA-DLKHLYRLRVF-----GCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKD--L 770 (911)
Q Consensus 699 ~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~-----~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l 770 (911)
.|.+ +|+.++...+..+. .+++|+.|+++ +|+.++..+.+.. . ......+++|+.|+|++ .+.+ +
T Consensus 376 ~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~---~~l~~~~~~L~~L~L~~--~l~~~~~ 448 (594)
T 2p1m_B 376 SVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG-F---GAIVEHCKDLRRLSLSG--LLTDKVF 448 (594)
T ss_dssp EEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH-H---HHHHHHCTTCCEEECCS--SCCHHHH
T ss_pred HHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH-H---HHHHhhCCCccEEeecC--cccHHHH
Confidence 5533 33444433333332 46777777777 4555553221100 0 00011467888888865 3333 3
Q ss_pred ccccc-CCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCC--CCCCCCCccEEeeCCC
Q 042327 771 TFLVF-APNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYW--KPLSLPQLKEMKVDGC 847 (911)
Q Consensus 771 ~~l~~-l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~l~~C 847 (911)
+.+.. +++|+.|+|++|......+. . -...+++|+.|+|++|+. ..... ....+++|+.|++++|
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~--------~---l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMH--------H---VLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHH--------H---HHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESS
T ss_pred HHHHHhchhccEeeccCCCCcHHHHH--------H---HHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCC
Confidence 33444 78888888888764222211 0 124579999999999885 32211 2345789999999999
Q ss_pred CC
Q 042327 848 FG 849 (911)
Q Consensus 848 ~~ 849 (911)
+.
T Consensus 517 ~~ 518 (594)
T 2p1m_B 517 SV 518 (594)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=2.8e-16 Score=185.53 Aligned_cols=318 Identities=14% Similarity=0.099 Sum_probs=175.2
Q ss_pred cccceEeecccc-cccc--cCCC-CCCCCccEEEccCCCCCCcChhHH----hcCCcccEEEccCCC--Cc--ccCcccc
Q 042327 512 WENVRRLSLMQN-EITN--LKEI-PTCPHLLTLFLDNNESLKIPNDFF----QYMHSLKVLNLSRIK--LK--SFPLGIS 579 (911)
Q Consensus 512 ~~~l~~L~l~~~-~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~L~~~~--i~--~lp~~i~ 579 (911)
+++|++|++.+| .+.. ++.+ ..+++|++|++++|.+.......+ ..+++|++|++++|. ++ .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 467777777766 3333 3332 357777777777776544333222 245677777777775 22 2222234
Q ss_pred CCCCCCEEeecCC-CCccccccccCCccccEEecccccc------ccccChhhhc------------------------C
Q 042327 580 KLVSLQQLDLSYS-SIKELPRELYALVNLKCLNLEHAEE------LITIPQQVIS------------------------N 628 (911)
Q Consensus 580 ~l~~L~~L~L~~~-~i~~lp~~~~~l~~L~~L~l~~~~~------l~~lp~~~i~------------------------~ 628 (911)
++++|++|++++| .+..+|..+.++++|++|+++++.. +..++.. +. .
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA-LSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH-HHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH-HhcCCCcccccCCcccchhhHHHHHHh
Confidence 5677777777777 5556666677777777777554421 1111111 22 3
Q ss_pred CccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecc----
Q 042327 629 FSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQS---- 704 (911)
Q Consensus 629 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~---- 704 (911)
+++|++|++++|... .......+..+++|+.|.++.+ ... ..+......+++++.|.+.+
T Consensus 288 ~~~L~~L~L~~~~l~--------------~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQ--------------SYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp HTTCCEEECTTCCCC--------------HHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEEECSCTT
T ss_pred hCCCCEEEccCCCCC--------------HHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEEecCccc
Confidence 445555555544311 1122333567788888888765 221 11222222346778887743
Q ss_pred ----cCCCCccccCChh-cccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEee-----cccccccccc--
Q 042327 705 ----FNDSTSLDVSPLA-DLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIE-----VCLTLKDLTF-- 772 (911)
Q Consensus 705 ----~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~-----~c~~l~~l~~-- 772 (911)
+..++...+..+. .+++|+.|.+ +|+.+.......... .+++|+.|+|+ +|..++..+.
T Consensus 352 g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~--------~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 352 VMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIAR--------NRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp CSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHH--------HCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred ccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHh--------hCCCcceeEeecccCCCcccccCCchhh
Confidence 3333333322332 3678888854 455554322222210 47889999998 5666664332
Q ss_pred -----cccCCCccEEEEecCcchhHHhccCCCCCcccccCCCC-cccccceeccCCCCccCccCC-C-CCCCCCccEEee
Q 042327 773 -----LVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLN-PFAKLHYLGLVNLPNLRSIYW-K-PLSLPQLKEMKV 844 (911)
Q Consensus 773 -----l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~L~~i~~-~-~~~~~~L~~L~l 844 (911)
+..+++|+.|+|++ .+.+... ..+. .+++|+.|+|++|. +..... . ...+|+|+.|++
T Consensus 423 ~~~~l~~~~~~L~~L~L~~--~l~~~~~-----------~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG--LLTDKVF-----------EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS--SCCHHHH-----------HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHhhCCCccEEeecC--cccHHHH-----------HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEEC
Confidence 55688899999966 3332211 0122 37899999999876 322111 1 135899999999
Q ss_pred CCCCCCCCCCC--CC--CCCCCcceEEEcc
Q 042327 845 DGCFGLKKLPL--KC--NSAQEQTIVVHGD 870 (911)
Q Consensus 845 ~~C~~L~~lP~--~~--~~~l~~L~~~~~~ 870 (911)
++|+. +..+. .. ...|+.|.+.+|.
T Consensus 489 ~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 489 RDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp ESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred cCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 99976 32111 11 1245566665554
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=5.1e-16 Score=172.39 Aligned_cols=140 Identities=15% Similarity=0.081 Sum_probs=78.8
Q ss_pred CCCCCCccEEEccCCCCCCcChh----HHhcCCcccEEEccCCCCc----ccCccc-------cCCCCCCEEeecCCCCc
Q 042327 531 IPTCPHLLTLFLDNNESLKIPND----FFQYMHSLKVLNLSRIKLK----SFPLGI-------SKLVSLQQLDLSYSSIK 595 (911)
Q Consensus 531 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~L~~~~i~----~lp~~i-------~~l~~L~~L~L~~~~i~ 595 (911)
+..+++|++|++++|.+...... .+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 44566777777777765443222 2445677777777776444 233333 56677777777777666
Q ss_pred c-----ccccccCCccccEEeccccccccccChhh----hcCC---------ccccEEEcccccccccccccccccccCC
Q 042327 596 E-----LPRELYALVNLKCLNLEHAEELITIPQQV----ISNF---------SRLHVLRMYGTVSLNFLESLKDSILFGG 657 (911)
Q Consensus 596 ~-----lp~~~~~l~~L~~L~l~~~~~l~~lp~~~----i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 657 (911)
. +|..+.++++|++|++++|. ++..+... +..+ ++|++|++++|..... .
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-----------~ 175 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-----------S 175 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-----------G
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-----------H
Confidence 4 66666777777777777773 33221111 2233 6777777776643210 0
Q ss_pred chhHHHhhcCCCCCceEEEEEcchh
Q 042327 658 EEVLAEELLGLESLEVLTFTLRSVR 682 (911)
Q Consensus 658 ~~~~~~~l~~l~~L~~L~l~~~~~~ 682 (911)
.......+..+++|+.|+++.|.+.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCC
Confidence 1112234556666777766665554
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=8e-15 Score=152.05 Aligned_cols=171 Identities=22% Similarity=0.275 Sum_probs=140.9
Q ss_pred EEEEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc
Q 042327 495 FLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK 572 (911)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 572 (911)
.+...+..+..+|.. -.++++.|++++|.+..++. +..+++|++|++++|.+..+++..|..+++|++|+|++|.++
T Consensus 18 ~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 18 EVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp EEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred EEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 345556666666642 23689999999999988754 788999999999999999999888999999999999999999
Q ss_pred ccC-ccccCCCCCCEEeecCCCCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccc
Q 042327 573 SFP-LGISKLVSLQQLDLSYSSIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLK 650 (911)
Q Consensus 573 ~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 650 (911)
.+| ..+..+++|++|+|++|+++.+|.. +..+++|++|++++| .+..+|...++++++|++|++++|....+
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----- 170 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV----- 170 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC-----
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc-----
Confidence 876 4568999999999999999998876 477999999999999 67888886689999999999999854322
Q ss_pred cccccCCchhHHHhhcCCCCCceEEEEEcchh
Q 042327 651 DSILFGGEEVLAEELLGLESLEVLTFTLRSVR 682 (911)
Q Consensus 651 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 682 (911)
....+..+++|+.|+++.|.+.
T Consensus 171 ----------~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 ----------PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ----------CTTTTTTCTTCCEEECCSCCBC
T ss_pred ----------CHHHHhCCCCCCEEEeeCCcee
Confidence 2245677889999999877653
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=4.1e-15 Score=157.65 Aligned_cols=152 Identities=22% Similarity=0.352 Sum_probs=123.3
Q ss_pred CCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCE
Q 042327 507 PDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQ 586 (911)
Q Consensus 507 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 586 (911)
.....+++++.|++.+|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+| .++.+++|++
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKS 116 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCE
T ss_pred cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-hhccCCCCCE
Confidence 3445677899999999999888888889999999999998888876 788999999999999998876 4889999999
Q ss_pred EeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhc
Q 042327 587 LDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELL 666 (911)
Q Consensus 587 L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 666 (911)
|++++|.++.++ .+..+++|++|++++| .+..++. ++++++|++|++++|..... . .+.
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~---------------~--~l~ 175 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI---------------V--PLA 175 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC---------------G--GGT
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc---------------h--hhc
Confidence 999999998875 6888999999999988 5666743 88999999999998754321 1 167
Q ss_pred CCCCCceEEEEEcchh
Q 042327 667 GLESLEVLTFTLRSVR 682 (911)
Q Consensus 667 ~l~~L~~L~l~~~~~~ 682 (911)
.+++|+.|+++.|.+.
T Consensus 176 ~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHIS 191 (291)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred CCCccCEEECCCCcCC
Confidence 7788888887755443
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.58 E-value=3.1e-14 Score=155.81 Aligned_cols=292 Identities=13% Similarity=0.073 Sum_probs=177.6
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc------CHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL------RVEYIQEVI 227 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~~i 227 (911)
+.++||+.+++++.+++..+ +++.|+|++|+|||||++.++++. . .+|+.+.... +...+...+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 56899999999999988754 799999999999999999999875 1 6788776543 566677777
Q ss_pred HHHcCCC--------------C--CcccccCHHHHHHHHHHHccC-CcEEEEEcccccccc---------cccccccCCC
Q 042327 228 AKQMGFF--------------D--DSWRAKSVEEKALEIFNSLSE-KKFVLLLDDVWERVD---------LTKVGVPLPR 281 (911)
Q Consensus 228 ~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~~~~~~~~ 281 (911)
.+.+... . .........+....+.+..+. ++++|||||++...+ +..+.....
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~- 160 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD- 160 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-
Confidence 6665420 0 000123455666666655543 489999999975432 111211111
Q ss_pred CCCCCcEEEEEcCchhH-hhh---------c--cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcC
Q 042327 282 PKNMASKVVFTTRSEEV-CGF---------M--EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECG 349 (911)
Q Consensus 282 ~~~~~s~iivTtR~~~v-~~~---------~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~ 349 (911)
...+.++|+|++.... ... + .....+++.+|+.+|+.+++.+.+.......+ .+.+..+++.|+
T Consensus 161 -~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tg 236 (350)
T 2qen_A 161 -SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLD 236 (350)
T ss_dssp -HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHT
T ss_pred -hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhC
Confidence 1247889999887643 211 1 11247899999999999999876543221111 246789999999
Q ss_pred CChhHHHHHHhhhcCCCCHHHHHH-HHHHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhccCCCCcccCHHH
Q 042327 350 GLPLALITIGRAMACKKTPEEWRY-AIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCSLYPEDYCISKEN 428 (911)
Q Consensus 350 g~Plai~~~~~~l~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~ 428 (911)
|+|+++..++..+....+...+.. ..+....... ..+. .+.+ + ++ ..+..+..++. + ..+...
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~---~l~~-~-~~-~~~~~l~~la~---g-~~~~~~ 300 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIM------GELE---ELRR-R-SP-RYVDILRAIAL---G-YNRWSL 300 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------HHHH---HHHH-H-CH-HHHHHHHHHHT---T-CCSHHH
T ss_pred CCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH------HHHH---HHHh-C-Ch-hHHHHHHHHHh---C-CCCHHH
Confidence 999999998865432122222211 1111100000 0111 1112 2 55 68888888887 2 234455
Q ss_pred HHHHHHhcCCcccCccchhhhhHHHHHHHHHHhccccccCCCeeecchhHHHHH
Q 042327 429 LIDCWIGEGLLNESDRFGEQNQGYFILGILLHACLLEEGGDGEVKMHDVIRDMS 482 (911)
Q Consensus 429 li~~wiaeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~mhdlv~~~a 482 (911)
+....-+.. - .........+++.|.+.+++......+...|.+++++.
T Consensus 301 l~~~~~~~~-~-----~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 301 IRDYLAVKG-T-----KIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHTT-C-----CCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred HHHHHHHHh-C-----CCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence 544332210 0 01234566789999999999875333334577887764
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.7e-15 Score=147.46 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=130.4
Q ss_pred cccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc-cCccccCCCCCCEEe
Q 042327 510 REWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS-FPLGISKLVSLQQLD 588 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~ 588 (911)
..+++++.|++++|.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 567899999999999999888899999999999999877665 37889999999999999985 688999999999999
Q ss_pred ecCCCCcc-ccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcC
Q 042327 589 LSYSSIKE-LPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLG 667 (911)
Q Consensus 589 L~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 667 (911)
+++|.++. .|..+..+++|++|++++|..++.+|. +..+++|++|++++|.... ...+..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~~~l~~ 179 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------YRGIED 179 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------CTTGGG
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------hHHhcc
Confidence 99999995 677899999999999999965888874 8999999999999985432 125778
Q ss_pred CCCCceEEEEEcchh
Q 042327 668 LESLEVLTFTLRSVR 682 (911)
Q Consensus 668 l~~L~~L~l~~~~~~ 682 (911)
+++|+.|+++.|.+.
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 899999999887754
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=2.8e-15 Score=174.31 Aligned_cols=119 Identities=23% Similarity=0.294 Sum_probs=60.4
Q ss_pred ceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCC
Q 042327 515 VRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 515 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i 594 (911)
+..+.+..+.+..+..+..+++|+.|++++|.+..++. +..+++|+.|+|++|.++.+|. ++.+++|++|+|++|.+
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 33334444444443334445555555555555555442 4455555555555555555543 55555555555555555
Q ss_pred ccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccc
Q 042327 595 KELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 595 ~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
+.+| .+..+++|++|+|++| .+..+|. +..+++|+.|++++|
T Consensus 100 ~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 100 KDLS-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNN 141 (605)
T ss_dssp CCCT-TSTTCTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSS
T ss_pred CCCh-hhccCCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCC
Confidence 5544 4555555555555555 3344432 455555555555554
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=9e-14 Score=152.59 Aligned_cols=289 Identities=12% Similarity=0.101 Sum_probs=171.9
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-----cCHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-----LRVEYIQEVIA 228 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~ 228 (911)
+.++||+++++.+.+ +.. +++.|+|++|+|||||++.+.+.. . . ..+|+.+... .+...++..+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 568999999999999 765 699999999999999999999886 2 2 2578887653 34445555544
Q ss_pred HHcC--------------C------CCC--cc-----cccCHHHHHHHHHHHccCCcEEEEEccccccc-----cccccc
Q 042327 229 KQMG--------------F------FDD--SW-----RAKSVEEKALEIFNSLSEKKFVLLLDDVWERV-----DLTKVG 276 (911)
Q Consensus 229 ~~l~--------------~------~~~--~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~~ 276 (911)
+.+. . ... .. .......+...+.+.-+ ++++|||||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 4331 0 000 00 02234555555554433 49999999996532 222221
Q ss_pred ccCCCCCCCCcEEEEEcCchhHhh-h---------c-cc-cceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHH
Q 042327 277 VPLPRPKNMASKVVFTTRSEEVCG-F---------M-EA-HRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTV 344 (911)
Q Consensus 277 ~~~~~~~~~~s~iivTtR~~~v~~-~---------~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i 344 (911)
..+. ....+.++|+|++...... . + +. ...+.+.+|+.+|+.+++...+....... ... ..|
T Consensus 162 ~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~----~~i 235 (357)
T 2fna_A 162 AYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KDY----EVV 235 (357)
T ss_dssp HHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CCH----HHH
T ss_pred HHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-CcH----HHH
Confidence 1111 1124678999999765321 1 1 11 25789999999999999988653211111 121 789
Q ss_pred HHHcCCChhHHHHHHhhhcCCCCHHHHHH-HHHHHhhcccCCCCCCCcccchhh-hcc--CCCCchhhhhHhhhhccCCC
Q 042327 345 ARECGGLPLALITIGRAMACKKTPEEWRY-AIQLLSSSASQFPGFGEGVYPLLK-FSY--DSLPNDTIRSCLLYCSLYPE 420 (911)
Q Consensus 345 ~~~c~g~Plai~~~~~~l~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~v~~~l~-~sy--~~L~~~~~k~cfl~~~~fp~ 420 (911)
++.|+|+|+++..++..+....+...|.. ..+.... .+...+. +.+ ..+|+ ..+..+..++.-+
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~g~- 303 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARK-RYLNIMRTLSKCG- 303 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTTCB-
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccH-HHHHHHHHHHcCC-
Confidence 99999999999999876643233333322 1111100 0111111 111 15676 6888888888721
Q ss_pred CcccCHHHHHHHHH-hcCCcccCccchhhhhHHHHHHHHHHhccccccCCCeeecchhHHHH
Q 042327 421 DYCISKENLIDCWI-GEGLLNESDRFGEQNQGYFILGILLHACLLEEGGDGEVKMHDVIRDM 481 (911)
Q Consensus 421 ~~~i~~~~li~~wi-aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~mhdlv~~~ 481 (911)
+...+....- ..|. .........+++.|.+.+++......+...|++++++
T Consensus 304 ----~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 304 ----KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp ----CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred ----CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 4444432210 1120 0123456678999999999987543333467888875
No 100
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=3.3e-14 Score=159.39 Aligned_cols=296 Identities=14% Similarity=0.092 Sum_probs=178.9
Q ss_pred CcccchhhHHHHHHHHH-c----C--CCCeEEEE--EcCCCCcHHHHHHHHHhhcccC--CCCCc-eEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCI-V----E--DPAVIIGI--YGMGGVGKTTLLTHINNKFLEG--PNTFD-CVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~F~-~~~wv~vs~~~~~~ 221 (911)
+.++||+.+++++.+++ . . .....+.| +|++|+||||||+.+++..... ...|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56999999999998888 3 2 24556777 9999999999999999876210 01122 36788877778889
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHcc--CCcEEEEEccccccc--------ccccccccCCC--CCC--CCc
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS--EKKFVLLLDDVWERV--------DLTKVGVPLPR--PKN--MAS 287 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~~~~~~--~~~--~~s 287 (911)
.++..++.+++..... ...+..+....+.+.+. +++++|||||++... .+..+...+.. ..+ ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999998754321 12345556666666664 679999999997532 12222111110 112 445
Q ss_pred EEEEEcCchhHhhhcc---------ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcC------CCh
Q 042327 288 KVVFTTRSEEVCGFME---------AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECG------GLP 352 (911)
Q Consensus 288 ~iivTtR~~~v~~~~~---------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~------g~P 352 (911)
.||+||+...+...+. ....+.+.+++.++++++|...+...... ..--.+....|++.|+ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcH
Confidence 6888887655322111 12239999999999999998664311100 0111356788999999 999
Q ss_pred hHHHHHHhhh-----cCC---CCHHHHHHHHHHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhccCC--CCc
Q 042327 353 LALITIGRAM-----ACK---KTPEEWRYAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCSLYP--EDY 422 (911)
Q Consensus 353 lai~~~~~~l-----~~~---~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp--~~~ 422 (911)
..+..+.... ... -+.+.+..+...... ...+.-++..||. +.+.++..++.+. .+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCC
Confidence 7665554321 111 123333332221100 2334557788998 7888888887653 233
Q ss_pred ccCHHHHHHHHH--h-cCCcccCccchhhhhHHHHHHHHHHhcccccc
Q 042327 423 CISKENLIDCWI--G-EGLLNESDRFGEQNQGYFILGILLHACLLEEG 467 (911)
Q Consensus 423 ~i~~~~li~~wi--a-eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (911)
.++...+...+. + . .... ..........+++.|...+++...
T Consensus 327 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLT-MYNV--KPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SBCHHHHHHHHHHHHHH-HSCC--CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHHHHHHh-hcCC--CCCCHHHHHHHHHHHHhCCCEEee
Confidence 555655554442 2 1 0000 011234456789999999999764
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=2.9e-14 Score=147.80 Aligned_cols=127 Identities=19% Similarity=0.239 Sum_probs=106.3
Q ss_pred cceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEeecCC
Q 042327 514 NVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYS 592 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~ 592 (911)
..+++++.++.+..+|... .++|+.|++++|.+..+++..|.++++|++|+|++|.++.++ ..+.++++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 5678888888888876522 268999999999998888888899999999999999998765 45788999999999999
Q ss_pred CCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccc
Q 042327 593 SIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 593 ~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
.++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++++|..
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcC
Confidence 99988754 577999999999998 67788877678899999999988743
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=7.8e-15 Score=161.11 Aligned_cols=259 Identities=14% Similarity=0.077 Sum_probs=146.9
Q ss_pred eccccccccc-CCC-CCCCCccEEEccCCCCCCcCh----hHHhcCC-cccEEEccCCCCccc-CccccCC-----CCCC
Q 042327 519 SLMQNEITNL-KEI-PTCPHLLTLFLDNNESLKIPN----DFFQYMH-SLKVLNLSRIKLKSF-PLGISKL-----VSLQ 585 (911)
Q Consensus 519 ~l~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~i~~l-p~~i~~l-----~~L~ 585 (911)
.++.|.+.+. +.+ ...++|++|++++|.+...+. ..+..++ +|++|+|++|.++.. +..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 4455555543 333 334458888888888777776 5677777 788888888877754 4444443 7888
Q ss_pred EEeecCCCCcccccc-----ccCC-ccccEEeccccccccccChhhh----cC-CccccEEEcccccccccccccccccc
Q 042327 586 QLDLSYSSIKELPRE-----LYAL-VNLKCLNLEHAEELITIPQQVI----SN-FSRLHVLRMYGTVSLNFLESLKDSIL 654 (911)
Q Consensus 586 ~L~L~~~~i~~lp~~-----~~~l-~~L~~L~l~~~~~l~~lp~~~i----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~ 654 (911)
+|+|++|.++..+.. +..+ ++|++|++++| .++..+...+ .. .++|++|++++|.....
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--------- 153 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK--------- 153 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS---------
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH---------
Confidence 888888887754322 3444 78888888887 4566554333 33 35788888887743311
Q ss_pred cCCchhHHHhhcCCC-CCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcc-cccceEEEcccCC
Q 042327 655 FGGEEVLAEELLGLE-SLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADL-KHLYRLRVFGCRK 732 (911)
Q Consensus 655 ~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 732 (911)
+.......+..++ +|+.|+++.|.+......... ..+..+ ++|+.|++++|.
T Consensus 154 --~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~-----------------------~~l~~~~~~L~~L~Ls~N~- 207 (362)
T 3goz_A 154 --SSDELIQILAAIPANVNSLNLRGNNLASKNCAELA-----------------------KFLASIPASVTSLDLSANL- 207 (362)
T ss_dssp --CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH-----------------------HHHHTSCTTCCEEECTTSC-
T ss_pred --HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH-----------------------HHHHhCCCCCCEEECCCCC-
Confidence 0122344455554 777777766655432110000 012233 477777777653
Q ss_pred ccceeeccccccccCCCCC-ccCcccEEEeecccccccccc------cccCCCccEEEEecCcchhHHhccCCCCCcccc
Q 042327 733 LEELKMDYKRLVQATRQPC-VFHGLHTVHIEVCLTLKDLTF------LVFAPNLKYAEILNCPAMEEIISAGKFADVPEV 805 (911)
Q Consensus 733 l~~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~~------l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~ 805 (911)
+......... .... ..++|+.|+|++| .+.+.+. +..+++|+.|+|++|.. ..+.. .....+
T Consensus 208 i~~~~~~~l~-----~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l-~~i~~----~~~~~l 276 (362)
T 3goz_A 208 LGLKSYAELA-----YIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSK----EQCKAL 276 (362)
T ss_dssp GGGSCHHHHH-----HHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHH-TTCCH----HHHHHH
T ss_pred CChhHHHHHH-----HHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCc-cccCH----HHHHHH
Confidence 4331111000 0000 1357888888888 5555322 45678888888888751 10000 000011
Q ss_pred cCCCCcccccceeccCCCC
Q 042327 806 MGNLNPFAKLHYLGLVNLP 824 (911)
Q Consensus 806 ~~~~~~~~~L~~L~L~~~~ 824 (911)
...+..+++|+.|++++++
T Consensus 277 ~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HTTSTTCCEEEEECTTSCB
T ss_pred HHHhccCCceEEEecCCCc
Confidence 1246677888888888865
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=3.1e-14 Score=150.89 Aligned_cols=165 Identities=23% Similarity=0.354 Sum_probs=143.0
Q ss_pred EEEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc
Q 042327 495 FLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF 574 (911)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 574 (911)
.+...+..+..++.+..+++++.|++++|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.++.+
T Consensus 50 ~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~ 127 (291)
T 1h6t_A 50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI 127 (291)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCC
T ss_pred EEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCC
Confidence 3455566677777888899999999999999998889999999999999999988765 88999999999999999988
Q ss_pred CccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccc
Q 042327 575 PLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSIL 654 (911)
Q Consensus 575 p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 654 (911)
+ .+..+++|++|++++|+++.+ ..+..+++|++|++++| .+..++. +..+++|++|++++|....
T Consensus 128 ~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~---------- 192 (291)
T 1h6t_A 128 N-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD---------- 192 (291)
T ss_dssp G-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB----------
T ss_pred h-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCC----------
Confidence 5 788999999999999999998 47899999999999999 6777776 8999999999999985432
Q ss_pred cCCchhHHHhhcCCCCCceEEEEEcchhh
Q 042327 655 FGGEEVLAEELLGLESLEVLTFTLRSVRA 683 (911)
Q Consensus 655 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 683 (911)
...+..+++|+.|+++.|.+..
T Consensus 193 -------l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -------LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -------CGGGTTCTTCSEEEEEEEEEEC
T ss_pred -------ChhhccCCCCCEEECcCCcccC
Confidence 2347889999999999887643
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=1.1e-14 Score=169.23 Aligned_cols=171 Identities=22% Similarity=0.306 Sum_probs=137.4
Q ss_pred CCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCE
Q 042327 507 PDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQ 586 (911)
Q Consensus 507 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 586 (911)
.....+++|+.|++.+|.+..++.+..+++|+.|+|++|.+..+++ +..+++|++|+|++|.++.+| .++.+++|++
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 3455677899999999999988888999999999999999888877 788999999999999998877 7889999999
Q ss_pred EeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhc
Q 042327 587 LDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELL 666 (911)
Q Consensus 587 L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 666 (911)
|+|++|.+..+| .+..+++|+.|+|++| .+..++. ++.+++|+.|++++|..... .+ +.
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~~---------------~~--l~ 172 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI---------------VP--LA 172 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCCC---------------GG--GT
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCCc---------------hh--hc
Confidence 999999999876 5888999999999998 5677743 88999999999998854321 11 77
Q ss_pred CCCCCceEEEEEcchhhHHHHHhhccccccceeeEeccc
Q 042327 667 GLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSF 705 (911)
Q Consensus 667 ~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~ 705 (911)
.+++|+.|+++.|.+..++. ...+++|+.|.++++
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~~----l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQ 207 (605)
T ss_dssp TCTTCCEEECCSSCCCBCGG----GTTCTTCSEEECCSE
T ss_pred cCCCCCEEECcCCCCCCChH----HccCCCCCEEEccCC
Confidence 88899999998877665422 122445666666654
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=3.6e-14 Score=144.62 Aligned_cols=143 Identities=27% Similarity=0.403 Sum_probs=109.9
Q ss_pred EEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc
Q 042327 497 VYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF 574 (911)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 574 (911)
...+..+..+|. .-.+++++|++++|.+..++. +..+++|++|++++|.+..++...|..+++|++|+|++|.++.+
T Consensus 25 ~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 25 DCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp ECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 334445555554 223678888888888877633 67788888888888888888877778888888888888888877
Q ss_pred Ccc-ccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccc
Q 042327 575 PLG-ISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 575 p~~-i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 641 (911)
|.. +..+++|++|+|++|+++.+|..+..+++|++|++++| .+..+|...+..+++|++|++.+|.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 654 57788888888888888888888888888888888887 5677776667888888888888764
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=2.5e-15 Score=161.23 Aligned_cols=139 Identities=15% Similarity=0.088 Sum_probs=78.2
Q ss_pred CCccEEEccCCCCCCcCh-h--HHhcCCcccEEEccCCCCc-ccCccc--cCCCCCCEEeecCCCCccc-c----ccccC
Q 042327 535 PHLLTLFLDNNESLKIPN-D--FFQYMHSLKVLNLSRIKLK-SFPLGI--SKLVSLQQLDLSYSSIKEL-P----RELYA 603 (911)
Q Consensus 535 ~~L~~L~l~~~~~~~~~~-~--~~~~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~i~~l-p----~~~~~ 603 (911)
..++.|.+.++.+....- . -+..+++|++|++++|.++ ..|..+ +++++|++|++++|.++.. | ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 345666666654422100 0 0122455777777777776 345555 6777777777777777642 1 23345
Q ss_pred CccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhh
Q 042327 604 LVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRA 683 (911)
Q Consensus 604 l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 683 (911)
+++|++|++++| .+..++...++++++|++|++++|...... .......+..+++|+.|+++.|.++.
T Consensus 144 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 144 KPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGER-----------GLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp CSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHH-----------HHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred ccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccch-----------hhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 777777777777 445555544677777777777776422100 00001112456677777777666654
Q ss_pred HH
Q 042327 684 LQ 685 (911)
Q Consensus 684 l~ 685 (911)
++
T Consensus 212 l~ 213 (310)
T 4glp_A 212 PT 213 (310)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 107
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.53 E-value=1.3e-14 Score=127.64 Aligned_cols=83 Identities=8% Similarity=0.092 Sum_probs=74.0
Q ss_pred cchhHHHHhHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHH
Q 042327 9 VSCDAIFSRCLDCTVTRAAYISELQANIDALRTERQRLIEARNDVLRKVAAAEQQR-MRRLNKVQGWLSRVEAVEADADK 87 (911)
Q Consensus 9 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~-~~~~~~v~~Wl~~v~~~~~~~ed 87 (911)
|+|+++++||.+++.+|+.++.||+++++.|+++|+.|+++|.| |+++. ...+++|+.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999998 55542 23468999999999999999999
Q ss_pred HHHhChhhhhc
Q 042327 88 LIRDSPQEIEK 98 (911)
Q Consensus 88 ~ld~~~~~~~~ 98 (911)
++|+|.++...
T Consensus 74 ~iD~f~~~~~~ 84 (115)
T 3qfl_A 74 VVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999987753
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=2.6e-14 Score=148.92 Aligned_cols=156 Identities=22% Similarity=0.279 Sum_probs=132.3
Q ss_pred cccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCC
Q 042327 503 LTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLV 582 (911)
Q Consensus 503 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~ 582 (911)
+..++.+..+++++.|++.+|.+..++.+..+++|++|++++|.+..+++ +..+++|++|+|++|.++.+|.... .
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~ 106 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--A 106 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--S
T ss_pred cccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--C
Confidence 34445567788999999999999999888899999999999999999887 8889999999999999998875443 8
Q ss_pred CCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHH
Q 042327 583 SLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLA 662 (911)
Q Consensus 583 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (911)
+|++|++++|.++.+| .+.++++|++|++++| .+..+|. ++.+++|++|++++|.... .
T Consensus 107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~-----------------~ 165 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN-----------------T 165 (263)
T ss_dssp SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB-----------------C
T ss_pred cccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc-----------------h
Confidence 9999999999999987 5889999999999998 5777874 8999999999999885431 1
Q ss_pred HhhcCCCCCceEEEEEcchhh
Q 042327 663 EELLGLESLEVLTFTLRSVRA 683 (911)
Q Consensus 663 ~~l~~l~~L~~L~l~~~~~~~ 683 (911)
..+..+++|+.|+++.|.+..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHhccCCCCCEEeCCCCcccC
Confidence 457788999999999877643
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=9.1e-14 Score=140.58 Aligned_cols=127 Identities=28% Similarity=0.328 Sum_probs=68.7
Q ss_pred ccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCcc-ccCCCCCCEEee
Q 042327 513 ENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLG-ISKLVSLQQLDL 589 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L 589 (911)
++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.|+.+|.. +.++++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 35555555555555543 245555555555555555555444455555555555555555555443 345555555555
Q ss_pred cCCCCccc-cccccCCccccEEeccccccccccChhhhcCCccccEEEcccc
Q 042327 590 SYSSIKEL-PRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 590 ~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
++|.++.+ |..+..+++|++|+|++| .+..++.+.+..+++|++|++++|
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 55555544 233445555555555555 344455444555555555555554
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=1.2e-14 Score=161.45 Aligned_cols=239 Identities=18% Similarity=0.166 Sum_probs=165.4
Q ss_pred ccccccceEeeccccccccc------CCCCCCCCccEEEccCCCCCCc----ChhH------HhcCCcccEEEccCCCCc
Q 042327 509 VREWENVRRLSLMQNEITNL------KEIPTCPHLLTLFLDNNESLKI----PNDF------FQYMHSLKVLNLSRIKLK 572 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~----~~~~------~~~l~~L~~L~L~~~~i~ 572 (911)
+..++++++|++++|.+... ..+..+++|++|++++|.+..+ |..+ +..+++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34567899999999988763 2367899999999999865433 3332 468899999999999988
Q ss_pred c-----cCccccCCCCCCEEeecCCCCcc-----ccccccCC---------ccccEEeccccccc-cccCh--hhhcCCc
Q 042327 573 S-----FPLGISKLVSLQQLDLSYSSIKE-----LPRELYAL---------VNLKCLNLEHAEEL-ITIPQ--QVISNFS 630 (911)
Q Consensus 573 ~-----lp~~i~~l~~L~~L~L~~~~i~~-----lp~~~~~l---------~~L~~L~l~~~~~l-~~lp~--~~i~~l~ 630 (911)
. +|..+.++++|++|+|++|.++. ++..+..+ ++|++|++++|... ..+|. ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 78889999999999999999873 34445455 89999999999432 23442 2377899
Q ss_pred cccEEEcccccccccccccccccccCCchhHHH-hhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCC
Q 042327 631 RLHVLRMYGTVSLNFLESLKDSILFGGEEVLAE-ELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDST 709 (911)
Q Consensus 631 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~ 709 (911)
+|++|++++|..... + ...... .+..+++|+.|+++.|.+.........
T Consensus 188 ~L~~L~L~~n~l~~~----------g-~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~------------------- 237 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPE----------G-IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA------------------- 237 (386)
T ss_dssp TCCEEECCSSCCCHH----------H-HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-------------------
T ss_pred CcCEEECcCCCCCHh----------H-HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-------------------
Confidence 999999999854310 0 111233 778899999999998887532110000
Q ss_pred ccccCChhcccccceEEEcccCCcccee----eccccccccCCCCCccCcccEEEeeccccccc-----ccc-c-ccCCC
Q 042327 710 SLDVSPLADLKHLYRLRVFGCRKLEELK----MDYKRLVQATRQPCVFHGLHTVHIEVCLTLKD-----LTF-L-VFAPN 778 (911)
Q Consensus 710 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~----~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~~-l-~~l~~ 778 (911)
..+..+++|+.|++++|. +.... +.... .+.+++|+.|+|++| .+.. ++. + ..+++
T Consensus 238 ----~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~-------~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 238 ----IALKSWPNLRELGLNDCL-LSARGAAAVVDAFS-------KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp ----HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHH-------TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTT
T ss_pred ----HHHccCCCcCEEECCCCC-CchhhHHHHHHHHh-------hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCC
Confidence 123455778888887764 33221 11110 013788899999888 4554 543 4 56889
Q ss_pred ccEEEEecCcch
Q 042327 779 LKYAEILNCPAM 790 (911)
Q Consensus 779 L~~L~L~~c~~l 790 (911)
|+.|+|++|+.-
T Consensus 305 L~~L~l~~N~l~ 316 (386)
T 2ca6_A 305 LLFLELNGNRFS 316 (386)
T ss_dssp CCEEECTTSBSC
T ss_pred ceEEEccCCcCC
Confidence 999999887643
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=1.1e-14 Score=159.97 Aligned_cols=258 Identities=14% Similarity=0.059 Sum_probs=168.0
Q ss_pred EEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-----ccccCCC-CCCEEeecCCCCccc-cccccCC-----cc
Q 042327 539 TLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-----LGISKLV-SLQQLDLSYSSIKEL-PRELYAL-----VN 606 (911)
Q Consensus 539 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~~~~l-----~~ 606 (911)
.+.++.|.+....+.++...++|++|+|++|.++..+ ..+.+++ +|++|+|++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3567888888777777777777999999999998765 5677888 899999999998855 4455554 89
Q ss_pred ccEEeccccccccccChhh----hcCC-ccccEEEcccccccccccccccccccCCchhHHHhhcCC-CCCceEEEEEcc
Q 042327 607 LKCLNLEHAEELITIPQQV----ISNF-SRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGL-ESLEVLTFTLRS 680 (911)
Q Consensus 607 L~~L~l~~~~~l~~lp~~~----i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 680 (911)
|++|++++|. ++..+... +..+ ++|++|++++|..... ........+..+ ++|+.|+++.|.
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-----------~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-----------SSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-----------CHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-----------HHHHHHHHHHhCCCceeEEEccCCc
Confidence 9999999984 55555432 3344 8899999998854321 012223345553 578888887766
Q ss_pred hhhHH--HHHhhccccccceeeEecccCCCCccccCChhcc-cccceEEEcccCCccceeeccccccccCCCCCcc-Ccc
Q 042327 681 VRALQ--LILISHKLRSCTQALFLQSFNDSTSLDVSPLADL-KHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVF-HGL 756 (911)
Q Consensus 681 ~~~l~--~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l-~~L 756 (911)
+.... .+. ..+..+ ++|+.|++++|. +....+..... ....+ ++|
T Consensus 150 l~~~~~~~l~-------------------------~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~-----~l~~~~~~L 198 (362)
T 3goz_A 150 LGIKSSDELI-------------------------QILAAIPANVNSLNLRGNN-LASKNCAELAK-----FLASIPASV 198 (362)
T ss_dssp GGGSCHHHHH-------------------------HHHHTSCTTCCEEECTTSC-GGGSCHHHHHH-----HHHTSCTTC
T ss_pred CCHHHHHHHH-------------------------HHHhcCCccccEeeecCCC-CchhhHHHHHH-----HHHhCCCCC
Confidence 55211 110 112223 388888888863 44333221110 00034 599
Q ss_pred cEEEeeccccccc-----cc-cccc-CCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCC-----
Q 042327 757 HTVHIEVCLTLKD-----LT-FLVF-APNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLP----- 824 (911)
Q Consensus 757 ~~L~L~~c~~l~~-----l~-~l~~-l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~----- 824 (911)
+.|+|++| .+.+ ++ .+.. .++|+.|+|++|.. ++... ..+...+..+++|+.|+|++|.
T Consensus 199 ~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~-------~~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 199 TSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSL-------ENLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp CEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCH-------HHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred CEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHH-------HHHHHHHhcCCCccEEEeccCCccccC
Confidence 99999999 4665 33 2444 46999999999753 22110 0111145678999999999975
Q ss_pred --ccCccCCCCCCCCCccEEeeCCCC
Q 042327 825 --NLRSIYWKPLSLPQLKEMKVDGCF 848 (911)
Q Consensus 825 --~L~~i~~~~~~~~~L~~L~l~~C~ 848 (911)
.+..++.....+++|+.|++++++
T Consensus 270 ~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 270 KEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHHHhccCCceEEEecCCCc
Confidence 133344456678899999999964
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=8e-14 Score=138.51 Aligned_cols=145 Identities=21% Similarity=0.303 Sum_probs=126.2
Q ss_pred cEEEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 494 NFLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
..+...+..+..++.+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 34556667777777888899999999999999888889999999999999999887444458889999999999999985
Q ss_pred -cCccccCCCCCCEEeecCCC-CccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccc
Q 042327 574 -FPLGISKLVSLQQLDLSYSS-IKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 574 -lp~~i~~l~~L~~L~L~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
.|..++.+++|++|++++|. ++.+| .+..+++|++|++++| .+..++. +..+++|++|++++|..
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC--
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCccc
Confidence 67889999999999999997 99998 7899999999999999 5777873 89999999999998753
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=6.7e-14 Score=141.56 Aligned_cols=149 Identities=19% Similarity=0.274 Sum_probs=126.9
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i 594 (911)
+.+++.++.+..+|.-. .++|+.|++++|.+..+++..|..+++|++|+|++|.++.+ |..+.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 46788888888876521 27899999999999999998899999999999999999977 78899999999999999999
Q ss_pred ccccccc-cCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCce
Q 042327 595 KELPREL-YALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEV 673 (911)
Q Consensus 595 ~~lp~~~-~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 673 (911)
+.+|..+ ..+++|++|++++| .+..++...+..+++|++|++++|....+ ....+..+++|+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTI---------------AKGTFSPLRAIQT 156 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTCCE
T ss_pred CccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEE---------------CHHHHhCCCCCCE
Confidence 9998774 67999999999999 67778766699999999999999865432 2234677889999
Q ss_pred EEEEEcch
Q 042327 674 LTFTLRSV 681 (911)
Q Consensus 674 L~l~~~~~ 681 (911)
|+++.|.+
T Consensus 157 L~L~~N~~ 164 (220)
T 2v9t_B 157 MHLAQNPF 164 (220)
T ss_dssp EECCSSCE
T ss_pred EEeCCCCc
Confidence 99987765
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=139.49 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=61.9
Q ss_pred cceEeecccccccccCC---CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEEee
Q 042327 514 NVRRLSLMQNEITNLKE---IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQLDL 589 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L 589 (911)
.++.|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|. .++++++|++|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34455555555544421 3445555555555555555554445555555555555555554432 2445555555555
Q ss_pred cCCCCccc-cccccCCccccEEeccccccccccChhhhcCCccccEEEcccc
Q 042327 590 SYSSIKEL-PRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 590 ~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
++|.++.+ |..+..+++|++|++++| .+..+++..+..+++|++|++++|
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 55555544 333444555555555554 334443333455555555555544
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.2e-13 Score=136.70 Aligned_cols=142 Identities=28% Similarity=0.421 Sum_probs=108.3
Q ss_pred EeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC
Q 042327 498 YAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP 575 (911)
Q Consensus 498 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 575 (911)
..+.++..+|. ...+++++|++++|.+..++. +..+++|++|++++|.+..++...|..+++|++|++++|.++.+|
T Consensus 14 c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 14 CYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 33444544443 234578888888888877754 677888888888888888888877788888888888888888776
Q ss_pred cc-ccCCCCCCEEeecCCCCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEccccc
Q 042327 576 LG-ISKLVSLQQLDLSYSSIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 576 ~~-i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 641 (911)
.. ++++++|++|++++|.++.+|.. +.++++|++|++++| .+..+|...+.++++|++|++++|.
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 54 57888888888888888877765 567888888888887 5667777667788888888888763
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=139.23 Aligned_cols=150 Identities=16% Similarity=0.240 Sum_probs=125.5
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcC-hhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEEeecCCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIP-NDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQLDLSYSS 593 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~ 593 (911)
+.+++++|.+..+|.. -.+.++.|++++|.+..++ ...|..+++|++|+|++|.|+.++. .+.++++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 5789999998888652 2356799999999999884 5668999999999999999998865 79999999999999999
Q ss_pred Ccccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCc
Q 042327 594 IKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLE 672 (911)
Q Consensus 594 i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 672 (911)
++.+|.. +..+++|++|++++| .+..+++..+.++++|++|++++|....+ .+..+..+++|+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~ 156 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV---------------APGAFDTLHSLS 156 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB---------------CTTTTTTCTTCC
T ss_pred cCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE---------------CHHHhcCCCCCC
Confidence 9988765 778999999999999 56777655689999999999999854322 345677889999
Q ss_pred eEEEEEcchh
Q 042327 673 VLTFTLRSVR 682 (911)
Q Consensus 673 ~L~l~~~~~~ 682 (911)
.|+++.|.+.
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 9999887653
No 117
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=5.2e-14 Score=150.97 Aligned_cols=198 Identities=16% Similarity=0.090 Sum_probs=121.7
Q ss_pred ccceEeeccccccccc-CC-C--CCCCCccEEEccCCCCCCcCh----hHHhcCCcccEEEccCCCCcccC-ccccCCCC
Q 042327 513 ENVRRLSLMQNEITNL-KE-I--PTCPHLLTLFLDNNESLKIPN----DFFQYMHSLKVLNLSRIKLKSFP-LGISKLVS 583 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~-~~-~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~ 583 (911)
+++++|++++|.+... +. + ..+++|++|++++|.+....+ ..+..+++|++|+|++|.++.+| ..++++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4577788887777654 22 3 667788888888887654322 22346778888888888777554 56777888
Q ss_pred CCEEeecCCCCcc---cccc--ccCCccccEEeccccccccccChh---hhcCCccccEEEccccccccccccccccccc
Q 042327 584 LQQLDLSYSSIKE---LPRE--LYALVNLKCLNLEHAEELITIPQQ---VISNFSRLHVLRMYGTVSLNFLESLKDSILF 655 (911)
Q Consensus 584 L~~L~L~~~~i~~---lp~~--~~~l~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 655 (911)
|++|+|++|++.. ++.. +..+++|++|++++| .++.+|.. .++.+++|++|++++|.....
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------- 239 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRAT---------- 239 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC----------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCcc----------
Confidence 8888888887653 4332 356778888888877 45544432 346677888888887743321
Q ss_pred CCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccc
Q 042327 656 GGEEVLAEELLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEE 735 (911)
Q Consensus 656 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 735 (911)
.......+..+++|+.|+++.|.+. .++. .+ .++|+.|+++++ .++.
T Consensus 240 --~p~~~~~~~~~~~L~~L~Ls~N~l~---------------------------~lp~-~~--~~~L~~L~Ls~N-~l~~ 286 (310)
T 4glp_A 240 --VNPSAPRCMWSSALNSLNLSFAGLE---------------------------QVPK-GL--PAKLRVLDLSSN-RLNR 286 (310)
T ss_dssp --CCSCCSSCCCCTTCCCEECCSSCCC---------------------------SCCS-CC--CSCCSCEECCSC-CCCS
T ss_pred --chhhHHhccCcCcCCEEECCCCCCC---------------------------chhh-hh--cCCCCEEECCCC-cCCC
Confidence 0001111222356666666544433 2221 12 268888888875 3554
Q ss_pred eeeccccccccCCCCCccCcccEEEeeccc
Q 042327 736 LKMDYKRLVQATRQPCVFHGLHTVHIEVCL 765 (911)
Q Consensus 736 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 765 (911)
++. .. .+++|+.|+|++|+
T Consensus 287 ~~~--~~---------~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 287 APQ--PD---------ELPEVDNLTLDGNP 305 (310)
T ss_dssp CCC--TT---------SCCCCSCEECSSTT
T ss_pred Cch--hh---------hCCCccEEECcCCC
Confidence 322 11 67889999998884
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=3.4e-14 Score=147.99 Aligned_cols=168 Identities=20% Similarity=0.246 Sum_probs=137.7
Q ss_pred cccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEee
Q 042327 510 REWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDL 589 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 589 (911)
..+.++..+.+..+.+..++.+..+++|++|++++|.+..++ . +..+++|++|+|++|.++.+|. ++++++|++|++
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 356678888899999988888889999999999999999887 3 7889999999999999999987 999999999999
Q ss_pred cCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCC
Q 042327 590 SYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLE 669 (911)
Q Consensus 590 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 669 (911)
++|+++.+|.... ++|++|++++| .+..+|. +.++++|++|++++|....+ ..+..++
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~~-----------------~~l~~l~ 150 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKSI-----------------VMLGFLS 150 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCBC-----------------GGGGGCT
T ss_pred CCCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCCC-----------------hHHccCC
Confidence 9999999886444 99999999999 6777764 89999999999999854321 2477788
Q ss_pred CCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccC
Q 042327 670 SLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCR 731 (911)
Q Consensus 670 ~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 731 (911)
+|+.|+++.|.+..+ ..+..+++|+.|+++++.
T Consensus 151 ~L~~L~L~~N~i~~~-----------------------------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT-----------------------------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCEEECTTSCCCBC-----------------------------TTSTTCCCCCEEEEEEEE
T ss_pred CCCEEECCCCcCcch-----------------------------HHhccCCCCCEEeCCCCc
Confidence 888888875544322 245567788888887753
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2e-13 Score=149.71 Aligned_cols=171 Identities=20% Similarity=0.260 Sum_probs=130.5
Q ss_pred EEEEeCCccccCCCccccccceEeecccccccccCC--CC-CCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCC
Q 042327 495 FLVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IP-TCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 571 (911)
.+...+..+..+|. .-...++.|+|++|.+..++. +. .+++|++|++++|.+..+++..|..+++|++|+|++|.+
T Consensus 22 ~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 34555666666664 224568899999999888754 45 889999999999999999888888999999999999999
Q ss_pred cccCc-cccCCCCCCEEeecCCCCccc-cccccCCccccEEeccccccccccChhhh---cCCccccEEEcccccccccc
Q 042327 572 KSFPL-GISKLVSLQQLDLSYSSIKEL-PRELYALVNLKCLNLEHAEELITIPQQVI---SNFSRLHVLRMYGTVSLNFL 646 (911)
Q Consensus 572 ~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~i---~~l~~L~~L~l~~~~~~~~~ 646 (911)
+.+|. .+.++++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|...+ ..+++|++|++++|....+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l- 178 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKL- 178 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCC-
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-
Confidence 88754 578899999999999999977 556788999999999998 6788888755 5789999999998754322
Q ss_pred cccccccccCCchhHHHhhcCCCC--CceEEEEEcchh
Q 042327 647 ESLKDSILFGGEEVLAEELLGLES--LEVLTFTLRSVR 682 (911)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 682 (911)
....+..++. |+.|+++.|.+.
T Consensus 179 --------------~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 --------------PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --------------CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred --------------CHHHhhhccHhhcceEEecCCCcc
Confidence 2234445554 367777776653
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=2.5e-13 Score=138.37 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=127.4
Q ss_pred cceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCcc-ccCCCCCCEEeecCC
Q 042327 514 NVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLG-ISKLVSLQQLDLSYS 592 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 592 (911)
..+.++.+++.+..+|.. -.++|++|++++|.+..+++..|..+++|++|+|++|.++.+|.. +.++++|++|+|++|
T Consensus 20 s~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 455688888888888762 238999999999999999888899999999999999999988754 689999999999999
Q ss_pred CCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCC
Q 042327 593 SIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESL 671 (911)
Q Consensus 593 ~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 671 (911)
.++.+|.. +..+++|++|++++| .+..+|.. +.++++|++|++++|....+ ....+..+++|
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L 161 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI---------------PHGAFDRLSSL 161 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC---------------CTTTTTTCTTC
T ss_pred cCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc---------------CHHHHhCCCCC
Confidence 99999876 578999999999999 67899987 79999999999999854322 22446778899
Q ss_pred ceEEEEEcchh
Q 042327 672 EVLTFTLRSVR 682 (911)
Q Consensus 672 ~~L~l~~~~~~ 682 (911)
+.|+++.|.+.
T Consensus 162 ~~L~l~~N~~~ 172 (229)
T 3e6j_A 162 THAYLFGNPWD 172 (229)
T ss_dssp CEEECTTSCBC
T ss_pred CEEEeeCCCcc
Confidence 99998877643
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.1e-13 Score=134.80 Aligned_cols=128 Identities=21% Similarity=0.239 Sum_probs=69.7
Q ss_pred cccccceEeecccccccccCCCCCCC-CccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccc-cCCCCCCEE
Q 042327 510 REWENVRRLSLMQNEITNLKEIPTCP-HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGI-SKLVSLQQL 587 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L 587 (911)
..+.+++.|++++|.+..++.+..+. +|++|++++|.+..++ .+..+++|++|+|++|.++.+|..+ +.+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 33445666666666555554444433 5666666666555542 2455556666666666555555443 555566666
Q ss_pred eecCCCCccccc--cccCCccccEEeccccccccccChh---hhcCCccccEEEcccc
Q 042327 588 DLSYSSIKELPR--ELYALVNLKCLNLEHAEELITIPQQ---VISNFSRLHVLRMYGT 640 (911)
Q Consensus 588 ~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~ 640 (911)
++++|.++.+|. .+..+++|++|++++| .+..+|.. ++..+++|+.|++++|
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 666665555554 4555556666666555 33444442 3455555555555544
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=1e-12 Score=150.97 Aligned_cols=112 Identities=22% Similarity=0.373 Sum_probs=82.5
Q ss_pred cceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCC
Q 042327 514 NVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSS 593 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 593 (911)
+++.|++++|.+..+|... +++|++|++++|.+..+| ..+++|++|+|++|.|+.+|. +.+ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6777888888777766521 367888888888877777 336778888888888887776 554 78888888888
Q ss_pred CccccccccCCccccEEeccccccccccChhhhcCCccccEEEccccc
Q 042327 594 IKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 594 i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 641 (911)
++.+|. .+++|++|++++| .++.+|. .+++|++|++++|.
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSC
T ss_pred CCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCC
Confidence 887776 5778888888877 4566765 46777777777763
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=2.1e-13 Score=128.80 Aligned_cols=124 Identities=27% Similarity=0.277 Sum_probs=104.3
Q ss_pred cccceEeeccccccc--ccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc-cCccccCCCCCCEE
Q 042327 512 WENVRRLSLMQNEIT--NLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS-FPLGISKLVSLQQL 587 (911)
Q Consensus 512 ~~~l~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L 587 (911)
.++++.|++++|.+. .++. +..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 368899999999888 5655 57889999999999988877 447889999999999999987 78777789999999
Q ss_pred eecCCCCcccc--ccccCCccccEEeccccccccccCh---hhhcCCccccEEEcc
Q 042327 588 DLSYSSIKELP--RELYALVNLKCLNLEHAEELITIPQ---QVISNFSRLHVLRMY 638 (911)
Q Consensus 588 ~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~ 638 (911)
++++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 99999999875 77888999999999998 5677775 458889999998875
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=7.4e-13 Score=132.84 Aligned_cols=148 Identities=27% Similarity=0.347 Sum_probs=122.5
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCcc-ccCCCCCCEEeecCCCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLG-ISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~i 594 (911)
+.+...++.+..+|. .-.++|++|++++|.+..+++..|..+++|++|++++|.++.+|.. +..+++|++|++++|++
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 456777777777654 2356899999999999999998899999999999999999988764 68999999999999999
Q ss_pred cccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCce
Q 042327 595 KELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEV 673 (911)
Q Consensus 595 ~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 673 (911)
+.+|.. +.++++|++|++++| .+..+|...+.++++|++|++++|....+ ....+..+++|+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---------------~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSV---------------PDGVFDRLTSLQY 152 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTCCE
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCcccee---------------CHHHhccCCCccE
Confidence 998866 578999999999999 67888887689999999999999854322 2233667888888
Q ss_pred EEEEEcc
Q 042327 674 LTFTLRS 680 (911)
Q Consensus 674 L~l~~~~ 680 (911)
|+++.|.
T Consensus 153 L~l~~N~ 159 (208)
T 2o6s_A 153 IWLHDNP 159 (208)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 8887654
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=3.2e-13 Score=130.43 Aligned_cols=127 Identities=24% Similarity=0.279 Sum_probs=99.8
Q ss_pred ccceEeeccccccc--ccCC-CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc-cCccccCCCCCCEEe
Q 042327 513 ENVRRLSLMQNEIT--NLKE-IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS-FPLGISKLVSLQQLD 588 (911)
Q Consensus 513 ~~l~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~ 588 (911)
+++++|++++|.+. .++. +..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57888888888887 6665 47788888888888887777 347778888888888888886 676667788888888
Q ss_pred ecCCCCcccc--ccccCCccccEEeccccccccccCh---hhhcCCccccEEEcccccc
Q 042327 589 LSYSSIKELP--RELYALVNLKCLNLEHAEELITIPQ---QVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 589 L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~ 642 (911)
+++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 8888888776 67778888888888888 5566665 4478888888888887743
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=4.3e-13 Score=147.01 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=125.1
Q ss_pred ceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHh-cCCcccEEEccCCCCcccC-ccccCCCCCCEEeecCC
Q 042327 515 VRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQ-YMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYS 592 (911)
Q Consensus 515 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~ 592 (911)
-+.+++.++.+..+|.. -.+.++.|++++|.+..++...|. .+++|++|+|++|.|+.+| ..+.++++|++|+|++|
T Consensus 20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 35788999988888752 235699999999999999988887 8999999999999999886 56999999999999999
Q ss_pred CCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCC
Q 042327 593 SIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESL 671 (911)
Q Consensus 593 ~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 671 (911)
+++.+|.. +..+++|++|+|++| .+..++...+.++++|++|++++|....+ ....+..+..+++|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l------------~~~~~~~~~~l~~L 165 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRF------------PVELIKDGNKLPKL 165 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSC------------CGGGTC----CTTC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCee------------CHHHhcCcccCCcC
Confidence 99988764 678999999999999 56777666699999999999999865432 11122223668889
Q ss_pred ceEEEEEcchhhH
Q 042327 672 EVLTFTLRSVRAL 684 (911)
Q Consensus 672 ~~L~l~~~~~~~l 684 (911)
+.|+++.|.+..+
T Consensus 166 ~~L~L~~N~l~~l 178 (361)
T 2xot_A 166 MLLDLSSNKLKKL 178 (361)
T ss_dssp CEEECCSSCCCCC
T ss_pred CEEECCCCCCCcc
Confidence 9999987776543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=6.8e-13 Score=129.10 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=118.3
Q ss_pred ccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccc-cC
Q 042327 525 ITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPREL-YA 603 (911)
Q Consensus 525 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~-~~ 603 (911)
+...+.+.++++|+.|++++|.+..++. +....++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+ ..
T Consensus 9 i~~~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 9 IEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp HHTSCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred HHHHHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 3444567788999999999999988854 344445999999999999988 58999999999999999999998776 88
Q ss_pred CccccEEeccccccccccCh-hhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchh
Q 042327 604 LVNLKCLNLEHAEELITIPQ-QVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVR 682 (911)
Q Consensus 604 l~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 682 (911)
+++|++|++++| .++.+|. ..+..+++|++|++++|..... .......+..+++|+.|+++.+...
T Consensus 87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~------------~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCc------------HhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999999 5688886 2388999999999999865422 1112234778899999999988876
Q ss_pred hHH
Q 042327 683 ALQ 685 (911)
Q Consensus 683 ~l~ 685 (911)
...
T Consensus 154 ~~~ 156 (176)
T 1a9n_A 154 ERQ 156 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=7.9e-12 Score=120.54 Aligned_cols=129 Identities=26% Similarity=0.277 Sum_probs=111.1
Q ss_pred cEEEEeCCccc--cCCC-ccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCC
Q 042327 494 NFLVYAGVGLT--KAPD-VREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIK 570 (911)
Q Consensus 494 ~~~~~~~~~~~--~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 570 (911)
..+...+..+. .+|. +..+++|+.|++++|.+..++.+..+++|++|++++|.+...++..+..+++|++|++++|.
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 106 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc
Confidence 34555555665 5554 47889999999999999988778999999999999999988666668889999999999999
Q ss_pred CcccC--ccccCCCCCCEEeecCCCCccccc----cccCCccccEEeccccccccccCh
Q 042327 571 LKSFP--LGISKLVSLQQLDLSYSSIKELPR----ELYALVNLKCLNLEHAEELITIPQ 623 (911)
Q Consensus 571 i~~lp--~~i~~l~~L~~L~L~~~~i~~lp~----~~~~l~~L~~L~l~~~~~l~~lp~ 623 (911)
++.+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++| ....+|.
T Consensus 107 l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 107 LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 99876 789999999999999999999987 7888999999999999 5566765
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=5.4e-12 Score=124.54 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=105.6
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChh-HHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPND-FFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSS 593 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~ 593 (911)
+.++++++.+..+|... ..+|++|++++|.+..+++. .|..+++|++|+|++|.++.+ |..++++++|++|+|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 67888999888887621 23899999999999888864 588999999999999999977 7789999999999999999
Q ss_pred Ccccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccc
Q 042327 594 IKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 594 i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
++.+|.. +..+++|++|++++| .+..+++..+..+++|++|++++|..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 9988765 778999999999999 45666544589999999999998753
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=8.4e-12 Score=123.07 Aligned_cols=124 Identities=19% Similarity=0.321 Sum_probs=105.5
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEeecCCCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i 594 (911)
+.++++++.+..+|.. -.++|++|++++|.+..+|. .|..+++|++|+|++|.|+.++ ..+.++++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4678888888887652 23689999999999998884 5888999999999999999875 4689999999999999999
Q ss_pred ccccc-cccCCccccEEeccccccccccChhhhcCCccccEEEcccccc
Q 042327 595 KELPR-ELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 595 ~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
+.+|. .+..+++|++|+|++| .+..+|.+.+..+++|++|++++|..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 98875 5788999999999998 67888887788999999999998743
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=8e-12 Score=121.63 Aligned_cols=126 Identities=22% Similarity=0.340 Sum_probs=106.5
Q ss_pred ceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCcc-ccCCCCCCEEeecCCC
Q 042327 515 VRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLG-ISKLVSLQQLDLSYSS 593 (911)
Q Consensus 515 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 593 (911)
.+.+++.++.+..+|. .-.++|+.|++++|.+..+++..|..+++|++|++++|.++.+|.. ++++++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4567788888877764 2347899999999999999988888999999999999999988754 6889999999999999
Q ss_pred Ccccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccc
Q 042327 594 IKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 594 i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
++.+|.. +.++++|++|++++| .+..+|...+..+++|++|++++|..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 9988875 578999999999998 67788887678899999999998753
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=6.1e-11 Score=131.30 Aligned_cols=289 Identities=16% Similarity=0.002 Sum_probs=174.8
Q ss_pred CcccchhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhcccC----CCC-CceEEEEEeCCcc-CHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKFLEG----PNT-FDCVIWVVVSKDL-RVEYI 223 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~-F~~~~wv~vs~~~-~~~~~ 223 (911)
+.++||+++++++.+++.. +..+.+.|+|++|+||||+|+.+++..... ... ....+|+.++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5689999999998876643 446789999999999999999999875211 011 3457888887777 88888
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc--cccc-cccCCCCCCCCcEEEEEcCchhHhh
Q 042327 224 QEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD--LTKV-GVPLPRPKNMASKVVFTTRSEEVCG 300 (911)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~-~~~~~~~~~~~s~iivTtR~~~v~~ 300 (911)
+..++.++..................+.+.+..++.+|||||++.... +... ...+.... .+..||+||+......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 899888873211111233445667777788877777999999965321 1222 11121012 5788999998753211
Q ss_pred hc------cccceEEeccCCHHHHHHHHHHHhcC--cccCCCccHHHHHHHHHHHcC---CChh-HHHHHHhhh--c---
Q 042327 301 FM------EAHRKFKMVCLSDNDSWDLFQQKVGK--EILNSHPDILELAQTVARECG---GLPL-ALITIGRAM--A--- 363 (911)
Q Consensus 301 ~~------~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~l~~~~~~i~~~c~---g~Pl-ai~~~~~~l--~--- 363 (911)
.+ .....+.+++++.++..+++...+.. .....++ +....+++.|+ |.|. |+..+-.+. .
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 11 11238999999999999999987632 1111222 34567777777 8887 444433222 1
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhccCCCC-cccCHHHHHHHHHhcCCcccC
Q 042327 364 CKKTPEEWRYAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCSLYPED-YCISKENLIDCWIGEGLLNES 442 (911)
Q Consensus 364 ~~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~-~~i~~~~li~~wiaeg~i~~~ 442 (911)
..-+.+.+..++..... ..+..++..|+. +.|..+...+. -+. ..+. +......-..| +
T Consensus 256 ~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~--- 315 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-Q--- 315 (384)
T ss_dssp SCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-C---
T ss_pred CccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-C---
Confidence 12456677666554322 234556677887 55555554554 111 1111 11111111112 1
Q ss_pred ccchhhhhHHHHHHHHHHhcccccc
Q 042327 443 DRFGEQNQGYFILGILLHACLLEEG 467 (911)
Q Consensus 443 ~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (911)
..........++..|...++++..
T Consensus 316 -~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 -KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 112345667789999999999863
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=1.8e-12 Score=149.85 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=66.3
Q ss_pred CccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEEecccc
Q 042327 536 HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHA 615 (911)
Q Consensus 536 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~ 615 (911)
.|++|++++|.++.+|. ++.+++|++|+|++|.++.+|..++++++|++|+|++|.++.+| .++++++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 36666666666666654 56666666666666666666666666666666666666666666 6666666666666666
Q ss_pred cccccc--ChhhhcCCccccEEEcccccc
Q 042327 616 EELITI--PQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 616 ~~l~~l--p~~~i~~l~~L~~L~l~~~~~ 642 (911)
.+..+ |.. ++++++|++|++++|..
T Consensus 519 -~l~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 519 -RLQQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -CCCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred -CCCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 44555 443 66666666666666643
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.28 E-value=5e-11 Score=132.15 Aligned_cols=291 Identities=14% Similarity=0.066 Sum_probs=174.4
Q ss_pred CcccchhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCceEEEEEeCCccCHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGP---NTFDCVIWVVVSKDLRVEYIQEV 226 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~ 226 (911)
+.++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++...... +.-...+|+.+....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5689999999999998843 4567899999999999999999998762100 01234678888888888899999
Q ss_pred HHHHcCCCCCcccccCHHHHHHHHHHHc--cCCcEEEEEcccccccc----cccc---cccCCCCC-CCCcEEEEEcCch
Q 042327 227 IAKQMGFFDDSWRAKSVEEKALEIFNSL--SEKKFVLLLDDVWERVD----LTKV---GVPLPRPK-NMASKVVFTTRSE 296 (911)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~----~~~~---~~~~~~~~-~~~s~iivTtR~~ 296 (911)
++.+++..... ......+....+.+.+ .+++.+|||||++.... .+.+ ........ ..+..+|.||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99999754321 2334566666666666 45689999999965321 1111 11111011 3456788888765
Q ss_pred hHhhhc-----c--ccceEEeccCCHHHHHHHHHHHhcC--cccCCCccHHHHHHHHHHHcC---CChhH-HHHHHhhhc
Q 042327 297 EVCGFM-----E--AHRKFKMVCLSDNDSWDLFQQKVGK--EILNSHPDILELAQTVARECG---GLPLA-LITIGRAMA 363 (911)
Q Consensus 297 ~v~~~~-----~--~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~l~~~~~~i~~~c~---g~Pla-i~~~~~~l~ 363 (911)
.....+ . ....+.+++++.++..+++...+.. .....++ +....+++.++ |.|.. +..+..+..
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 321111 1 1147899999999999999987532 1111222 34567777777 99943 333322211
Q ss_pred -----C--CCCHHHHHHHHHHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhc-cCCCCcccCHHHHHHHHHh
Q 042327 364 -----C--KKTPEEWRYAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCS-LYPEDYCISKENLIDCWIG 435 (911)
Q Consensus 364 -----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~-~fp~~~~i~~~~li~~wia 435 (911)
+ .-+.+.+..+...... ..+.-++..||. +.+..+...+ ++-....+....+.+....
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 1 1255666665544322 134456678887 4555554444 3332224444544333211
Q ss_pred ----cCCcccCccchhhhhHHHHHHHHHHhcccccc
Q 042327 436 ----EGLLNESDRFGEQNQGYFILGILLHACLLEEG 467 (911)
Q Consensus 436 ----eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (911)
.| + ..........+++.|...++++..
T Consensus 321 ~~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLG-L----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 12 1 112335667788999999998873
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=1.3e-11 Score=141.72 Aligned_cols=129 Identities=21% Similarity=0.281 Sum_probs=81.3
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP 575 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 575 (911)
+...++.+..+|.. -+++++.|++++|.+..+| ..+++|++|++++|.++.+|. +.. +|++|+|++|.++.+|
T Consensus 64 L~Ls~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp 136 (571)
T 3cvr_A 64 LQLNRLNLSSLPDN-LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLP 136 (571)
T ss_dssp EECCSSCCSCCCSC-CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCC
T ss_pred EEeCCCCCCccCHh-HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCC
Confidence 33444444444431 1356777777777776666 446677777777777666665 332 6777777777777666
Q ss_pred ccccCCCCCCEEeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccc
Q 042327 576 LGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 576 ~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. +. ++|++|++++|..
T Consensus 137 ~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 137 E---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLL 192 (571)
T ss_dssp C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCC
T ss_pred C---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCC
Confidence 5 56677777777777776665 4566777777776 4555665 43 6677777776643
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=2.3e-11 Score=114.59 Aligned_cols=120 Identities=25% Similarity=0.243 Sum_probs=103.0
Q ss_pred EEEEeCCccc--cCCC-ccccccceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCC
Q 042327 495 FLVYAGVGLT--KAPD-VREWENVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKL 571 (911)
Q Consensus 495 ~~~~~~~~~~--~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 571 (911)
.+...+..+. .+|. +..+++++.|++++|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCC
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcC
Confidence 4445555555 4443 477899999999999999887789999999999999999886666788899999999999999
Q ss_pred cccC--ccccCCCCCCEEeecCCCCccccc----cccCCccccEEeccc
Q 042327 572 KSFP--LGISKLVSLQQLDLSYSSIKELPR----ELYALVNLKCLNLEH 614 (911)
Q Consensus 572 ~~lp--~~i~~l~~L~~L~L~~~~i~~lp~----~~~~l~~L~~L~l~~ 614 (911)
+.+| ..++.+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9875 889999999999999999998886 678899999999863
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=2.4e-10 Score=126.75 Aligned_cols=290 Identities=14% Similarity=0.083 Sum_probs=176.7
Q ss_pred CcccchhhHHHHHHHHHcC----CCCe--EEEEEcCCCCcHHHHHHHHHhhcccCCCC-CceEEEEEeCCccCHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE----DPAV--IIGIYGMGGVGKTTLLTHINNKFLEGPNT-FDCVIWVVVSKDLRVEYIQEV 226 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~ 226 (911)
+.++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++.. . .. -..++++.++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~--~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-K--DKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-T--TSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-h--hhcCeeEEEEeCccCCCHHHHHHH
Confidence 5699999999999888864 3334 89999999999999999999987 2 22 135678888888888899999
Q ss_pred HHHHcCCCCCcccccCHHHHHHHHHHHcc--CCcEEEEEcccccc--cccccccccCCCCCC---CCcEEEEEcCchhHh
Q 042327 227 IAKQMGFFDDSWRAKSVEEKALEIFNSLS--EKKFVLLLDDVWER--VDLTKVGVPLPRPKN---MASKVVFTTRSEEVC 299 (911)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~---~~s~iivTtR~~~v~ 299 (911)
++..++..... ......+....+.+.+. +++.+|||||++.. ..+..+...+..... .+..||+||+.....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99998754321 22345555666655553 56899999999653 222333222220111 467788888776443
Q ss_pred hhcc-------ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHc---------CCChhHHHHHHhh-h
Q 042327 300 GFME-------AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVAREC---------GGLPLALITIGRA-M 362 (911)
Q Consensus 300 ~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c---------~g~Plai~~~~~~-l 362 (911)
..+. ....+.+.+++.++..+++...+.... ....--.+....+++.+ +|.|..+..+... .
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 2221 123699999999999999988764211 00011135677888999 7887654443322 1
Q ss_pred c-----CC--CCHHHHHHHHHHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhccCC---CCcccCHHHHHHH
Q 042327 363 A-----CK--KTPEEWRYAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCSLYP---EDYCISKENLIDC 432 (911)
Q Consensus 363 ~-----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp---~~~~i~~~~li~~ 432 (911)
. +. -+.+....+..... ...+.-.+..||. +.+.++..++.+. .+..++...+...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 1 11 12222222222111 1123334566777 6676666666543 2224555666554
Q ss_pred HHh----cCCcccCccchhhhhHHHHHHHHHHhcccccc
Q 042327 433 WIG----EGLLNESDRFGEQNQGYFILGILLHACLLEEG 467 (911)
Q Consensus 433 wia----eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (911)
+-. .|.. .-.......++.+|...+++...
T Consensus 318 ~~~~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 318 YKIVCEEYGER-----PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEe
Confidence 432 1211 11235567789999999999873
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=1.2e-11 Score=142.87 Aligned_cols=121 Identities=22% Similarity=0.263 Sum_probs=108.5
Q ss_pred cceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCC
Q 042327 514 NVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSS 593 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 593 (911)
.++.|++++|.+..+|.+..+++|++|++++|.+..+|.. ++.+++|++|+|++|.|+.+| .++++++|++|+|++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 5889999999999999999999999999999999999875 889999999999999999999 89999999999999999
Q ss_pred Cccc--cccccCCccccEEeccccccccccChh---hhcCCccccEEEc
Q 042327 594 IKEL--PRELYALVNLKCLNLEHAEELITIPQQ---VISNFSRLHVLRM 637 (911)
Q Consensus 594 i~~l--p~~~~~l~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l 637 (911)
++.+ |..++++++|+.|++++| .+..+|+. ++..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 9988 899999999999999999 46666542 2445888888863
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=121.97 Aligned_cols=125 Identities=19% Similarity=0.234 Sum_probs=107.7
Q ss_pred cEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccc-cccCCccccEEeccccc
Q 042327 538 LTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPR-ELYALVNLKCLNLEHAE 616 (911)
Q Consensus 538 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 616 (911)
++++++++.+..+|..+ ..+|++|+|++|.++.+|..+.++++|++|+|++|.|+.++. .+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 68999999999999764 368999999999999999999999999999999999998875 5788999999999999
Q ss_pred cccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcch
Q 042327 617 ELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSV 681 (911)
Q Consensus 617 ~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 681 (911)
.+..+|...+.++++|++|++++|....+ ....+..+++|+.|+++.|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVV---------------PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBC---------------CTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCee---------------ChhhhhcCccccEEEeCCCCe
Confidence 67888877799999999999999864422 223467788999999987765
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.1e-11 Score=147.95 Aligned_cols=108 Identities=27% Similarity=0.321 Sum_probs=56.9
Q ss_pred CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEE
Q 042327 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCL 610 (911)
Q Consensus 531 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 610 (911)
+..+++|++|+|++|.+..+|..++ .+++|++|+|++|.|+.+|..+++|++|++|+|++|.|+.+|..+++|++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 3445555555555555555554433 455555555555555555555555555555555555555555555555555555
Q ss_pred eccccccccccChhhhcCCccccEEEccccc
Q 042327 611 NLEHAEELITIPQQVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 611 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 641 (911)
+|++| .++.+|.. +++|++|++|++++|.
T Consensus 299 ~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 299 YFFDN-MVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp ECCSS-CCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred ECCCC-CCCccChh-hhcCCCccEEeCCCCc
Confidence 55555 34455554 5555555555555543
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=5.1e-11 Score=132.06 Aligned_cols=293 Identities=12% Similarity=0.070 Sum_probs=169.6
Q ss_pred CCcccchhhHHHHHHHHHc----CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHH
Q 042327 153 DPTVVGLESTLQKVWRCIV----EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIA 228 (911)
Q Consensus 153 ~~~~vGr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 228 (911)
++.++||+.+++.+.+++. ......+.|+|++|+||||||+.+++........-..++|+.+....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999887 345678999999999999999999987621100023567888777778888888888
Q ss_pred HHcCCCCCcccccCHHHHHHHHHHHcc--CCcEEEEEccccccc------ccccccccCCCCCCCCcEEEEEcCchhHhh
Q 042327 229 KQMGFFDDSWRAKSVEEKALEIFNSLS--EKKFVLLLDDVWERV------DLTKVGVPLPRPKNMASKVVFTTRSEEVCG 300 (911)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~~~~~~~~~s~iivTtR~~~v~~ 300 (911)
.+++..... ...+..+....+.+.+. +++.+|||||++... .+..+...+......+..+|+||+......
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 887653321 22345555566666554 458999999996532 122222111100234567788888664322
Q ss_pred hcc-------ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcC---CChhHHHHH-Hhhhc-----C
Q 042327 301 FME-------AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECG---GLPLALITI-GRAMA-----C 364 (911)
Q Consensus 301 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~---g~Plai~~~-~~~l~-----~ 364 (911)
.+. ....+.+++++.++..+++.+.+.... ....--.+....+++.++ |.|..+..+ ..+.. +
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 211 114799999999999999998653211 001112345666777777 999844333 22211 1
Q ss_pred --CCCHHHHHHHHHHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhccCCC-C-cccCHHHHHHHH--Hh--c
Q 042327 365 --KKTPEEWRYAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCSLYPE-D-YCISKENLIDCW--IG--E 436 (911)
Q Consensus 365 --~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~-~-~~i~~~~li~~w--ia--e 436 (911)
.-+.+..+.+...... ..+.-++..+|. +.+..+..++...+ + ..+....+.+.. ++ .
T Consensus 257 ~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIER-------------DRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp CSSCCHHHHHHHHHHHHH-------------HHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1245555554443221 234445667776 55555544442111 1 123333332221 11 1
Q ss_pred CCcccCccchhhhhHHHHHHHHHHhccccc
Q 042327 437 GLLNESDRFGEQNQGYFILGILLHACLLEE 466 (911)
Q Consensus 437 g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~ 466 (911)
| +. .........+++.|...++++.
T Consensus 323 g-~~----~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 323 G-VE----AVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp T-CC----CCCHHHHHHHHHHHHHHTSEEE
T ss_pred C-CC----CCCHHHHHHHHHHHHhCCCEEE
Confidence 1 11 1122456678899999999875
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=7.1e-11 Score=116.44 Aligned_cols=122 Identities=25% Similarity=0.284 Sum_probs=104.5
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccCC---CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCc
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE---IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLK 572 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~ 572 (911)
+...+..++.+|. .-..+++.|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|+|++|.++
T Consensus 13 l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 13 VDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp EECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred EEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC
Confidence 4455666666665 223489999999999998854 789999999999999999998888999999999999999999
Q ss_pred ccCc-cccCCCCCCEEeecCCCCccc-cccccCCccccEEeccccccc
Q 042327 573 SFPL-GISKLVSLQQLDLSYSSIKEL-PRELYALVNLKCLNLEHAEEL 618 (911)
Q Consensus 573 ~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l 618 (911)
.+|. .+.++++|++|+|++|+++.+ |..+..+++|++|++++|...
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8754 589999999999999999976 677889999999999999543
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=8.3e-11 Score=114.39 Aligned_cols=123 Identities=27% Similarity=0.385 Sum_probs=104.7
Q ss_pred EEEeCCccccCCCccccccceEeecccccccccCC--CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc
Q 042327 496 LVYAGVGLTKAPDVREWENVRRLSLMQNEITNLKE--IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS 573 (911)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 573 (911)
+...+..+..+|. ...++++.|++++|.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++|.++.
T Consensus 12 l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 90 (177)
T 2o6r_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90 (177)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc
Confidence 3344555666553 334799999999999998765 6889999999999999999999888999999999999999998
Q ss_pred cCcc-ccCCCCCCEEeecCCCCccccccc-cCCccccEEecccccccc
Q 042327 574 FPLG-ISKLVSLQQLDLSYSSIKELPREL-YALVNLKCLNLEHAEELI 619 (911)
Q Consensus 574 lp~~-i~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~~~l~ 619 (911)
+|.. +.++++|++|++++|.++.+|..+ ..+++|++|++++|....
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8765 689999999999999999998875 679999999999995433
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=9.8e-13 Score=130.71 Aligned_cols=107 Identities=24% Similarity=0.302 Sum_probs=74.1
Q ss_pred CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEE
Q 042327 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCL 610 (911)
Q Consensus 531 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L 610 (911)
+..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+| .+..+++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 456677777777777766666 366677777777777777777766666677777777777777766 56677777777
Q ss_pred eccccccccccCh-hhhcCCccccEEEccccc
Q 042327 611 NLEHAEELITIPQ-QVISNFSRLHVLRMYGTV 641 (911)
Q Consensus 611 ~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 641 (911)
++++| .+..+|. ..+..+++|++|++++|.
T Consensus 121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 77776 4555543 236677777777777664
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=1.7e-11 Score=146.23 Aligned_cols=152 Identities=22% Similarity=0.274 Sum_probs=98.4
Q ss_pred ccceEeecccccccccCC-CCCCCCccEE-----EccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCE
Q 042327 513 ENVRRLSLMQNEITNLKE-IPTCPHLLTL-----FLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQ 586 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L-----~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 586 (911)
+.+++|+|..|.+...+. +.....|+.+ ++..|.+. +++..|..+..|++|+|++|.+..+|..+.++++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 467888888887766432 2222333333 33334343 5566788999999999999999999999999999999
Q ss_pred EeecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhc
Q 042327 587 LDLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELL 666 (911)
Q Consensus 587 L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 666 (911)
|+|++|.|+.+|..+++|++|++|+|++| .+..+|.. +++|++|++|++++|.... .+..++
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~----------------lp~~~~ 313 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVTT----------------LPWEFG 313 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCCC----------------CCSSTT
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCCc----------------cChhhh
Confidence 99999999999999999999999999999 57799987 8999999999999985432 234588
Q ss_pred CCCCCceEEEEEcchhh
Q 042327 667 GLESLEVLTFTLRSVRA 683 (911)
Q Consensus 667 ~l~~L~~L~l~~~~~~~ 683 (911)
.+++|+.|+++.|.+..
T Consensus 314 ~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SCTTCCCEECTTSCCCS
T ss_pred cCCCccEEeCCCCccCC
Confidence 89999999999988763
No 146
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.11 E-value=6.2e-10 Score=114.60 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=114.5
Q ss_pred CcccchhhHHHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++... ....+.. ..+. .... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~---~~~~---~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCG---VCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS---SCCS---CSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC---CCCc---ccHH-HHHHhccCC
Confidence 358999999999999987643 35889999999999999999998762 1111100 0000 0000 001110000
Q ss_pred CCC---CcccccCHHHHHHHHHHHc-----cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchhHh-h-
Q 042327 233 FFD---DSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEEVC-G- 300 (911)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~v~-~- 300 (911)
... ........+ ....+.+.+ .+++.+||+||++.. ..+..+...+. ....+..+|+||+..... .
T Consensus 95 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 95 VDLIEIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp SSEEEEETTCGGGHH-HHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHH-SCCTTEEEEEEESCGGGSCHH
T ss_pred cceEEecCcccccHH-HHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHh-cCCCceEEEEEeCChHhCCHH
Confidence 000 000001111 122222222 356899999999652 33444433333 234577888888765421 1
Q ss_pred hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhh
Q 042327 301 FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRA 361 (911)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~ 361 (911)
.......+++++++.++..+++...+.......+ .+....|++.|+|.|..+..+...
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1122467899999999999999987753321112 345778999999999988776543
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=1.3e-10 Score=112.24 Aligned_cols=99 Identities=25% Similarity=0.355 Sum_probs=57.2
Q ss_pred eEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCcc-ccCCCCCCEEeecCCCC
Q 042327 516 RRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLG-ISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 516 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~i 594 (911)
+.++++++.+..+|.-. .++|++|++++|.+..+++..|.++++|++|+|++|.|+.+|.. +.++++|++|+|++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 45555555555554411 25566666666666666555556666666666666666655544 35566666666666666
Q ss_pred cccccc-ccCCccccEEecccc
Q 042327 595 KELPRE-LYALVNLKCLNLEHA 615 (911)
Q Consensus 595 ~~lp~~-~~~l~~L~~L~l~~~ 615 (911)
+.+|.. +..+++|++|++++|
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS
T ss_pred ceeCHHHhccccCCCEEEeCCC
Confidence 655554 455666666666655
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=1.9e-10 Score=111.07 Aligned_cols=102 Identities=22% Similarity=0.301 Sum_probs=91.2
Q ss_pred ccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCCCccccccc-cCCccccEEeccc
Q 042327 537 LLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSSIKELPREL-YALVNLKCLNLEH 614 (911)
Q Consensus 537 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~ 614 (911)
-+.+++++|.+..+|..+ ..+|++|+|++|.|+.+ |..++++++|++|+|++|+++.+|..+ .++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999999999864 38899999999999987 667899999999999999999998875 7899999999999
Q ss_pred cccccccChhhhcCCccccEEEcccccc
Q 042327 615 AEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 615 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
| .+..+|.+.+.++++|++|++++|..
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCc
Confidence 8 67889987789999999999999853
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=2e-10 Score=110.68 Aligned_cols=99 Identities=22% Similarity=0.346 Sum_probs=53.3
Q ss_pred cEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCCCccccccc-cCCccccEEecccc
Q 042327 538 LTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSSIKELPREL-YALVNLKCLNLEHA 615 (911)
Q Consensus 538 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~ 615 (911)
+++++++|.+..+|..+ .++|++|+|++|.|+.+ |..++++++|++|+|++|+++.+|... ..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555555555432 24555555555555544 334555555555555555555555443 45555555555555
Q ss_pred ccccccChhhhcCCccccEEEcccc
Q 042327 616 EELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 616 ~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
.+..+|.+.+.++++|++|++++|
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 345555544555556666665554
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.08 E-value=3e-09 Score=117.27 Aligned_cols=119 Identities=15% Similarity=0.206 Sum_probs=84.9
Q ss_pred cceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEeec
Q 042327 514 NVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLS 590 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 590 (911)
.++.+.+.+ .+..++ .|.++ +|+.+.+..+ +..++...|.++ +|+.+.+.. .++.++ ..+.+|.+|+.++++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 444444443 233342 25555 6888888766 777777777774 688888876 566663 567788888888888
Q ss_pred CCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEccc
Q 042327 591 YSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYG 639 (911)
Q Consensus 591 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 639 (911)
+|+++.+|.......+|+.+.+..+ +..++..++.++++|+.+.+..
T Consensus 189 ~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 189 KTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred CCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 8888888877777788888888754 6778877788888888888765
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=3.9e-10 Score=121.71 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=39.7
Q ss_pred ccccCChhcccccc-eEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccccc--ccccCCCccEEE
Q 042327 710 SLDVSPLADLKHLY-RLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT--FLVFAPNLKYAE 783 (911)
Q Consensus 710 ~~~~~~l~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~ 783 (911)
.++...|.++++|+ .+.+.+ .++.+....+. .+++|+.|++.++ .++.++ .+..+++|+.|.
T Consensus 263 ~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~---------~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 263 TIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM---------GCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECTTTTTTCTTCCEEEEECT--TCCEECTTTTT---------TCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred eehHHHhhCChhccEEEEEcc--cceEEchhhhh---------CCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 33345566777777 777765 46655544444 5777888887666 566554 366777777764
No 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.06 E-value=1.1e-09 Score=110.75 Aligned_cols=182 Identities=12% Similarity=0.084 Sum_probs=113.5
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-ceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF-DCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
..++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHHhc
Confidence 45899999999999999876655699999999999999999988751 1112 12344444433333222222211111
Q ss_pred CCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchhHh--hhccccceE
Q 042327 233 FFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSEEVC--GFMEAHRKF 308 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~~v~--~~~~~~~~~ 308 (911)
.. ..-.+++.+||+||++... ....+...+. ....+.++|+||+..... ........+
T Consensus 95 ~~-----------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 95 TA-----------------PIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp SC-----------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cc-----------------CCCccCceEEEEeChhhcCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 00 0113578999999996532 2333332222 234567888888765421 111223478
Q ss_pred EeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 309 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
.+.+++.++..+++.+.+.......+ .+....+++.++|.|..+..+
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999987743221111 245678889999999865544
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=4.2e-10 Score=108.31 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=90.2
Q ss_pred cceEeecccccccccCCCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCcc-ccCCCCCCEEeecCC
Q 042327 514 NVRRLSLMQNEITNLKEIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLG-ISKLVSLQQLDLSYS 592 (911)
Q Consensus 514 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 592 (911)
..+.+++++|.+..+|.-. .++|++|++++|.+..+++..|.++++|++|+|++|.|+.+|.. +.++++|++|+|++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3467899999998887522 38999999999999999888899999999999999999988765 589999999999999
Q ss_pred CCcccccc-ccCCccccEEeccccc
Q 042327 593 SIKELPRE-LYALVNLKCLNLEHAE 616 (911)
Q Consensus 593 ~i~~lp~~-~~~l~~L~~L~l~~~~ 616 (911)
+++.+|.. +.++++|++|+|++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99999875 7789999999999985
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=6.8e-10 Score=119.79 Aligned_cols=285 Identities=13% Similarity=0.058 Sum_probs=142.1
Q ss_pred cccceEeecccccc-cccCCCCC-CCCccEEEccCCCCC--CcChhHHhcCCcccEEEccCCCCcccCccccC-------
Q 042327 512 WENVRRLSLMQNEI-TNLKEIPT-CPHLLTLFLDNNESL--KIPNDFFQYMHSLKVLNLSRIKLKSFPLGISK------- 580 (911)
Q Consensus 512 ~~~l~~L~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~------- 580 (911)
+.+++.|.+.++-- .++..+.. +++|++|+|++|.+. ..+...+ +.++.+.+..+.|. +..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~--~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP--AYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC--TTTTEEEETTEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC--HHHhccccccccc
Confidence 44566666654311 11111222 667777777777655 2222211 22344444444211 122334
Q ss_pred -CCCCCEEeecCCCCcccccc-ccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCc
Q 042327 581 -LVSLQQLDLSYSSIKELPRE-LYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGE 658 (911)
Q Consensus 581 -l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 658 (911)
|.+|+.|+|.+ .++.++.. +.+|++|+.|++++| .+..++..++..+.++..+.......... ..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~-----------~~ 165 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRF-----------KN 165 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHT-----------ST
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhc-----------cc
Confidence 66666666666 56666543 445666666666665 34455655566655555554443110000 00
Q ss_pred hhHHHhhcCCCCCc-eEEEEEcchhhHHHHHhh-ccccccceeeEecccCCCCccccCChh-cccccceEEEcccCCccc
Q 042327 659 EVLAEELLGLESLE-VLTFTLRSVRALQLILIS-HKLRSCTQALFLQSFNDSTSLDVSPLA-DLKHLYRLRVFGCRKLEE 735 (911)
Q Consensus 659 ~~~~~~l~~l~~L~-~L~l~~~~~~~l~~l~~~-~~~~~~l~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~ 735 (911)
......+..+..|+ .+.+ .....++..... .-....+..+.+.+. +...+...+. .+++|+.|+|.++ .++.
T Consensus 166 ~i~~~~f~~~~~L~~~i~~--~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~ 240 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQV--GAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATT 240 (329)
T ss_dssp TTTTSCEEESCCCEEEEEE--CTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCE
T ss_pred cccccccccccccceeEEe--cCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-Ccce
Confidence 00111122333443 2222 122222221111 111223333333331 1111111111 2677888888764 3666
Q ss_pred eeeccccccccCCCCCccCcccEEEeeccccccccc--ccccCCCcc-EEEEecCcchhHHhccCCCCCcccccCCCCcc
Q 042327 736 LKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKDLT--FLVFAPNLK-YAEILNCPAMEEIISAGKFADVPEVMGNLNPF 812 (911)
Q Consensus 736 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 812 (911)
++...+. .+++|+.|+|.++ ++.++ .+..+++|+ .|.+.+ .++.|.. ..+.++
T Consensus 241 I~~~aF~---------~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c 296 (329)
T 3sb4_A 241 IPDFTFA---------QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGC 296 (329)
T ss_dssp ECTTTTT---------TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTC
T ss_pred ecHhhhh---------CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCC
Confidence 6555444 6778888888775 66655 377788888 888876 4444432 267788
Q ss_pred cccceeccCCCCccCccCC-CCCCCCCccEEee
Q 042327 813 AKLHYLGLVNLPNLRSIYW-KPLSLPQLKEMKV 844 (911)
Q Consensus 813 ~~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~l 844 (911)
++|+.+++.+ +.++.++. .+..+++|+.++.
T Consensus 297 ~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 8899998876 56777765 3556777777753
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=1.4e-11 Score=122.34 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=106.1
Q ss_pred ccEEEccCC--CCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCccccccccCCccccEEeccc
Q 042327 537 LLTLFLDNN--ESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKELPRELYALVNLKCLNLEH 614 (911)
Q Consensus 537 L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~l~~ 614 (911)
|+.+.+.++ .++.+|. .+..+++|++|++++|.++.+| .+.++++|++|++++|.++.+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 444444443 4556665 4888999999999999999999 99999999999999999999998888899999999999
Q ss_pred cccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhH
Q 042327 615 AEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRAL 684 (911)
Q Consensus 615 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 684 (911)
| .+..+|. +.++++|++|++++|.... ......+..+++|+.|+++.|.+...
T Consensus 103 N-~l~~l~~--~~~l~~L~~L~l~~N~i~~--------------~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 103 N-QIASLSG--IEKLVNLRVLYMSNNKITN--------------WGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp E-ECCCHHH--HHHHHHSSEEEESEEECCC--------------HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred C-cCCcCCc--cccCCCCCEEECCCCcCCc--------------hhHHHHHhcCCCCCEEEecCCccccc
Confidence 9 6777874 8999999999999985432 12335788999999999998877554
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=3.1e-08 Score=109.20 Aligned_cols=264 Identities=16% Similarity=0.164 Sum_probs=178.6
Q ss_pred CCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCc-cccCCCCCCEEeecCCCCccccc-cccCCccccEE
Q 042327 533 TCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPL-GISKLVSLQQLDLSYSSIKELPR-ELYALVNLKCL 610 (911)
Q Consensus 533 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L 610 (911)
.+..++.+.+.++ ++.++...|.++ +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .++.++. .+.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3577888888764 778888888885 7999999876 777754 4555 4799999986 6887764 46679999999
Q ss_pred eccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHHHhh
Q 042327 611 NLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLILIS 690 (911)
Q Consensus 611 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l~~~ 690 (911)
++.+| .+..+|.+.+. .++|+.+.+..+. . ......+.++++|+.+.+..
T Consensus 186 ~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~l-~---------------~I~~~aF~~~~~L~~l~l~~------------ 235 (401)
T 4fdw_A 186 DLSKT-KITKLPASTFV-YAGIEEVLLPVTL-K---------------EIGSQAFLKTSQLKTIEIPE------------ 235 (401)
T ss_dssp ECTTS-CCSEECTTTTT-TCCCSEEECCTTC-C---------------EECTTTTTTCTTCCCEECCT------------
T ss_pred ecCCC-cceEechhhEe-ecccCEEEeCCch-h---------------eehhhHhhCCCCCCEEecCC------------
Confidence 99987 68889988776 6899999987531 1 11234567778888776641
Q ss_pred ccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccc---
Q 042327 691 HKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTL--- 767 (911)
Q Consensus 691 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l--- 767 (911)
+++.+....|.+ .+|+.+.|. +.++.+....+. .+++|+.+.+.++...
T Consensus 236 ----------------~l~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~aF~---------~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 236 ----------------NVSTIGQEAFRE-SGITTVKLP--NGVTNIASRAFY---------YCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp ----------------TCCEECTTTTTT-CCCSEEEEE--TTCCEECTTTTT---------TCTTCCEEEEESSCCCCCT
T ss_pred ----------------CccCcccccccc-CCccEEEeC--CCccEEChhHhh---------CCCCCCEEEeCCccccCCc
Confidence 122333334444 578888884 346655544444 6788888888776321
Q ss_pred -cccc--ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCC-CCCCCCccEEe
Q 042327 768 -KDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWK-PLSLPQLKEMK 843 (911)
Q Consensus 768 -~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~ 843 (911)
..++ .+..+++|+.+.|.+ .++.|.. ..+.++++|+.+.|.. +++.+... +..+ +|+.|+
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-----------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE--SIRILGQ-----------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVK 351 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT--TCCEECT-----------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEE
T ss_pred ccEECHHHhhCCccCCeEEeCC--ceEEEhh-----------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEE
Confidence 1233 367788899888874 3444422 2577788999999964 47777653 5566 899999
Q ss_pred eCCCCCCCCCCCCCCCCC-CcceEEEcccccccc
Q 042327 844 VDGCFGLKKLPLKCNSAQ-EQTIVVHGDKTWWIN 876 (911)
Q Consensus 844 l~~C~~L~~lP~~~~~~l-~~L~~~~~~~~~~~~ 876 (911)
+.++ .+..++......+ ..+..+..+....+.
T Consensus 352 l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 352 VEGT-TPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp ECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred EcCC-CCcccccccccCCCCCccEEEeCHHHHHH
Confidence 9884 6666666555544 355556665544433
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=7.5e-09 Score=111.35 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=112.5
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-ceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF-DCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+ ...+++..+.......+ +++++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 45899999999999999887665599999999999999999998851 1111 12344443332222211 11111110
Q ss_pred CCCCcccccCHHHHHHHHHHHc-cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchhH-h-hhccccce
Q 042327 233 FFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEEV-C-GFMEAHRK 307 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~v-~-~~~~~~~~ 307 (911)
.. ...+ .+++.++|+||++.. ..+..+...+. ....++.+|+||+...- . ........
T Consensus 98 ~~----------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 98 QK----------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTME-LYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HB----------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred hc----------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHh-ccCCCceEEEEeCChhhchhHHHhhceE
Confidence 00 0012 456899999999753 22333333332 22356788888876432 1 11123358
Q ss_pred EEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhH-HHHHH
Q 042327 308 FKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLA-LITIG 359 (911)
Q Consensus 308 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pla-i~~~~ 359 (911)
+++.+++.++..+++...+.......+ .+....+++.|+|.|.. +..+.
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999987643221111 24567899999999954 44443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=9.2e-09 Score=111.88 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=60.1
Q ss_pred eecccc-cccccCCCCCCCCccEEEccC-CCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEeecCCCC
Q 042327 518 LSLMQN-EITNLKEIPTCPHLLTLFLDN-NESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSSI 594 (911)
Q Consensus 518 L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i 594 (911)
++++++ .+..+|.+..+++|+.|+|++ |.+..+++..|.++++|++|+|++|.|+.+| ..+++|++|++|+|++|++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 455554 555555556666666666664 6666666666666666666666666666553 3456666666666666666
Q ss_pred ccccccccCCccccEEecccc
Q 042327 595 KELPRELYALVNLKCLNLEHA 615 (911)
Q Consensus 595 ~~lp~~~~~l~~L~~L~l~~~ 615 (911)
+.+|..+.....|+.|+|.+|
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSS
T ss_pred ceeCHHHcccCCceEEEeeCC
Confidence 666655444333666666665
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=8.4e-08 Score=103.11 Aligned_cols=272 Identities=15% Similarity=0.080 Sum_probs=138.6
Q ss_pred CcccchhhHHHHHHHHHcC-----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE-----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIA 228 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 228 (911)
+.++|++..++.+..++.. .....|.|+|++|+||||+|+.+++.. ... .+++.++......++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHH---
Confidence 4589999998888777752 244678899999999999999999876 222 23444333222222211
Q ss_pred HHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCC-------CC----------CCCCcEE
Q 042327 229 KQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLP-------RP----------KNMASKV 289 (911)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~-------~~----------~~~~s~i 289 (911)
.+...+ .++.+|+|||+.... ....+...+. .. ...+..+
T Consensus 83 --------------------~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 83 --------------------ILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp --------------------HHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred --------------------HHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 111111 245688888885431 1111100000 00 0123567
Q ss_pred EEEcCchh-Hhhhc-c-ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHhhhcC--
Q 042327 290 VFTTRSEE-VCGFM-E-AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGRAMAC-- 364 (911)
Q Consensus 290 ivTtR~~~-v~~~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~~l~~-- 364 (911)
|.||.... +...+ . ....+.+.+++.+|..+++.+.+.......+ .+....+++.++|.|..+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 76666432 11111 1 1357899999999999999887754332222 356778999999999887766543321
Q ss_pred ----C--CCHHHHHHHHHHHhhcccCCCCCCCcccchhhhccCCCCchhhhhHhhhhccCCCCcccCHHHHHH----HHH
Q 042327 365 ----K--KTPEEWRYAIQLLSSSASQFPGFGEGVYPLLKFSYDSLPNDTIRSCLLYCSLYPEDYCISKENLID----CWI 434 (911)
Q Consensus 365 ----~--~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~----~wi 434 (911)
. -+.+....+...+..........+..+...+.-.|..-|. .....-..+ .+++..+-+ +-+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~l-------gi~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATAL-------SEDPGTLEEVHEPYLI 290 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHT-------TSCHHHHHHHTHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHh-------CCCHHHHHHHHhHHHH
Confidence 1 2344444443332211000000000111111112211111 122222222 233443332 345
Q ss_pred hcCCccc-CccchhhhhHHHHHH-HHHHhccccc
Q 042327 435 GEGLLNE-SDRFGEQNQGYFILG-ILLHACLLEE 466 (911)
Q Consensus 435 aeg~i~~-~~~~~~~~~~~~~l~-~L~~~~ll~~ 466 (911)
..|++.. ..+....+.+..|++ ++.+|+++|+
T Consensus 291 ~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 291 RQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 5788865 445667788888887 7888888875
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=2.7e-08 Score=108.21 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=87.7
Q ss_pred cEEEccCC-CCCCcChhHHhcCCcccEEEccC-CCCcccC-ccccCCCCCCEEeecCCCCccccc-cccCCccccEEecc
Q 042327 538 LTLFLDNN-ESLKIPNDFFQYMHSLKVLNLSR-IKLKSFP-LGISKLVSLQQLDLSYSSIKELPR-ELYALVNLKCLNLE 613 (911)
Q Consensus 538 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~l~ 613 (911)
..++++++ .+..+|. +..+.+|++|+|++ |.|+.+| ..+++|.+|++|+|++|+|+.+|. .+.+|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 8999998 88899999999996 9999887 579999999999999999998866 56889999999999
Q ss_pred ccccccccChhhhcCCccccEEEcccccc
Q 042327 614 HAEELITIPQQVISNFSRLHVLRMYGTVS 642 (911)
Q Consensus 614 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 642 (911)
+| .+..+|...+..++ |+.|++.+|..
T Consensus 89 ~N-~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SS-CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CC-ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 98 67889987666666 99999998753
No 161
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=5.2e-08 Score=104.89 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=111.5
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-ceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF-DCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+.......+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~-------- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIR-------- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTTH--------
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHHH--------
Confidence 45899999999999999877666699999999999999999998851 1111 123333333211111110
Q ss_pred CCCCcccccCHHHHHHHHHHH--c-cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchhH-hh-hcccc
Q 042327 233 FFDDSWRAKSVEEKALEIFNS--L-SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEEV-CG-FMEAH 305 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~v-~~-~~~~~ 305 (911)
+........ + .+++.++|+||++.. ..+..+...+. ....+.++|+||....- .. .....
T Consensus 95 ------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 95 ------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp ------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred ------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCCccccCHHHHhhC
Confidence 011111111 1 257889999999753 22333333322 22346788888876532 11 11123
Q ss_pred ceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHHh
Q 042327 306 RKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIGR 360 (911)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~~ 360 (911)
..+.+.+++.++...++...+.......+ .+....+++.++|.|..+..+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 47899999999999999887754321112 34667888999999986655443
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.64 E-value=3.4e-07 Score=95.92 Aligned_cols=170 Identities=9% Similarity=0.034 Sum_probs=104.9
Q ss_pred cccchhhHHHHHHHHHc----CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCC--CC--ceEEEEEeCCccCHHHHHHH
Q 042327 155 TVVGLESTLQKVWRCIV----EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPN--TF--DCVIWVVVSKDLRVEYIQEV 226 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~F--~~~~wv~vs~~~~~~~~~~~ 226 (911)
.+.||+++++++...|. .+..+.+.|+|++|+|||++|+.|+++...... .. -..+.|.+....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 37899999999987665 457788999999999999999999998732111 11 13567777777888899999
Q ss_pred HHHHcCCCCCcccccCHHHHHHHHHHHc---cCCcEEEEEcccccccccccccccC--CCCCCCCcEEEEEcCchhH---
Q 042327 227 IAKQMGFFDDSWRAKSVEEKALEIFNSL---SEKKFVLLLDDVWERVDLTKVGVPL--PRPKNMASKVVFTTRSEEV--- 298 (911)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~~--~~~~~~~s~iivTtR~~~v--- 298 (911)
|++++...... ..... +....+.+.+ .+++++++||+++...+-+.+...+ +........||.++...+.
T Consensus 101 I~~~L~g~~~~-~~~~~-~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLC-GDISL-EALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC---CCCCH-HHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCC-chHHH-HHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 99999643211 11222 3333344433 4678999999996543211111111 1011112234444433221
Q ss_pred ------hhhccccceEEeccCCHHHHHHHHHHHhc
Q 042327 299 ------CGFMEAHRKFKMVCLSDNDSWDLFQQKVG 327 (911)
Q Consensus 299 ------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (911)
...++ ...+.+.+++.+|-.+++.+++.
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11111 24689999999999999998763
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=6.3e-09 Score=113.52 Aligned_cols=160 Identities=17% Similarity=0.108 Sum_probs=105.7
Q ss_pred ccceEeecccccccccC-----C-C-CCCCCccEEEccCCCCCCcC-hhHHhcCCcccEEEccCCCCccc-----Cccc-
Q 042327 513 ENVRRLSLMQNEITNLK-----E-I-PTCPHLLTLFLDNNESLKIP-NDFFQYMHSLKVLNLSRIKLKSF-----PLGI- 578 (911)
Q Consensus 513 ~~l~~L~l~~~~~~~~~-----~-~-~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~l-----p~~i- 578 (911)
++++.|++++|.+.... . + ..+++|+.|++++|.+.... ..++..+++|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46778888888776521 1 1 23468999999998765432 23344567889999999988632 2222
Q ss_pred cCCCCCCEEeecCCCCcc-----ccccccCCccccEEeccccccccccC----hhhhcCCccccEEEccccccccccccc
Q 042327 579 SKLVSLQQLDLSYSSIKE-----LPRELYALVNLKCLNLEHAEELITIP----QQVISNFSRLHVLRMYGTVSLNFLESL 649 (911)
Q Consensus 579 ~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~lp----~~~i~~l~~L~~L~l~~~~~~~~~~~~ 649 (911)
...++|++|+|++|.++. ++..+..+++|++|+|++|. ++... ...+...++|++|++++|.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~---- 226 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT---- 226 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH----
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH----
Confidence 346789999999988863 55556778889999998884 44322 12256778899999888754311
Q ss_pred ccccccCCchhHHHhhcCCCCCceEEEEEcchhhH
Q 042327 650 KDSILFGGEEVLAEELLGLESLEVLTFTLRSVRAL 684 (911)
Q Consensus 650 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 684 (911)
+ .......+...++|+.|+++.|.+...
T Consensus 227 ------g-~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 227 ------A-ALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp ------H-HHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred ------H-HHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 0 122445566778888888888877543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=1.1e-06 Score=96.94 Aligned_cols=304 Identities=13% Similarity=0.087 Sum_probs=154.7
Q ss_pred ccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCC
Q 042327 509 VREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQ 585 (911)
Q Consensus 509 ~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~ 585 (911)
+.++.+|+.+.+.. .+..+. .|.+|++|+.+.+.++ +..++...|.++..|+.+.+..+ +..+ ...+.++..+.
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 55666777777653 344443 2666777777777644 55666666666666666555433 2222 12233332221
Q ss_pred EEeecCCCCcccc-ccccCCccccEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHh
Q 042327 586 QLDLSYSSIKELP-RELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEE 664 (911)
Q Consensus 586 ~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (911)
.. +. ..+..+. ..+.++.+|+.+.+.++ +..++.+++.++++|+.+.+..+... + ....
T Consensus 144 ~~-~~-~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~-I---------------~~~~ 203 (394)
T 4fs7_A 144 IT-IP-EGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKI-I---------------RDYC 203 (394)
T ss_dssp EE-CC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCE-E---------------CTTT
T ss_pred cc-cC-ccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceE-e---------------Cchh
Confidence 11 11 1122222 23456777888877654 45677666777777877777643110 0 1122
Q ss_pred hcCCCCCceEEEEEcchhhHHHHHhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeecccccc
Q 042327 665 LLGLESLEVLTFTLRSVRALQLILISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLV 744 (911)
Q Consensus 665 l~~l~~L~~L~l~~~~~~~l~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 744 (911)
+..+..|+.+.+..+.. .+.. ..-....++.+.+.. ..+.+.-..+..+..|+.+.+... +..+......
T Consensus 204 F~~~~~L~~i~~~~~~~-~i~~---~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~-- 273 (394)
T 4fs7_A 204 FAECILLENMEFPNSLY-YLGD---FALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFY-- 273 (394)
T ss_dssp TTTCTTCCBCCCCTTCC-EECT---TTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTT--
T ss_pred hccccccceeecCCCce-Eeeh---hhcccCCCceEEECC--CceecccccccccccceeEEcCCC--cceeeccccc--
Confidence 33444444443321100 0000 000112333443322 223333345556667777776532 3323222222
Q ss_pred ccCCCCCccCcccEEEeecccccccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCC
Q 042327 745 QATRQPCVFHGLHTVHIEVCLTLKDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLP 824 (911)
Q Consensus 745 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 824 (911)
.+..|+.+.+.... +. -..+..+.+|+.+.+.+ .++.|.. ..+.++.+|+.+.|.+
T Consensus 274 -------~~~~l~~~~~~~~~-i~-~~~F~~~~~L~~i~l~~--~i~~I~~-----------~aF~~c~~L~~i~lp~-- 329 (394)
T 4fs7_A 274 -------NCSGLKKVIYGSVI-VP-EKTFYGCSSLTEVKLLD--SVKFIGE-----------EAFESCTSLVSIDLPY-- 329 (394)
T ss_dssp -------TCTTCCEEEECSSE-EC-TTTTTTCTTCCEEEECT--TCCEECT-----------TTTTTCTTCCEECCCT--
T ss_pred -------cccccceeccCcee-ec-ccccccccccccccccc--ccceech-----------hhhcCCCCCCEEEeCC--
Confidence 45556665554321 11 11245667788777754 2333322 1466677888888753
Q ss_pred ccCccCC-CCCCCCCccEEeeCCCCCCCCCCCCCCCCCCcceEEEccc
Q 042327 825 NLRSIYW-KPLSLPQLKEMKVDGCFGLKKLPLKCNSAQEQTIVVHGDK 871 (911)
Q Consensus 825 ~L~~i~~-~~~~~~~L~~L~l~~C~~L~~lP~~~~~~l~~L~~~~~~~ 871 (911)
.++.|.. .+..+.+|+.+.+.. +++.++......+.+|+.+..+.
T Consensus 330 ~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 330 LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 3666654 355677888887754 37777776666667777666653
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.49 E-value=4.6e-07 Score=97.02 Aligned_cols=179 Identities=12% Similarity=0.116 Sum_probs=110.8
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCc-eEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFD-CVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...+. ..+.+..+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH-----------
Confidence 35899999999999988877665699999999999999999998751 11111 12333333211100
Q ss_pred CCCCcccccCHHHHHHHHHHH--c-cCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchh-Hh-hhcccc
Q 042327 233 FFDDSWRAKSVEEKALEIFNS--L-SEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEE-VC-GFMEAH 305 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~-v~-~~~~~~ 305 (911)
...+........ + .+++.++|+||++.. .....+...+. ....+..+|+||.... +. ......
T Consensus 84 ---------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 84 ---------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp ---------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS-SSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred ---------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcchHHHhhC
Confidence 111111111111 1 256889999999653 22344444443 3345678888876543 11 111223
Q ss_pred ceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 306 RKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
..+++.+++.++...++...+.......+ .+....+++.++|.+..+...
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999999887754332222 245677888999998765443
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=4.5e-08 Score=106.80 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=94.5
Q ss_pred CCCccEEEccCCCCCCcChhHHhcC-----CcccEEEccCCCCcc--cCccccCCCCCCEEeecCCCCccc-----cccc
Q 042327 534 CPHLLTLFLDNNESLKIPNDFFQYM-----HSLKVLNLSRIKLKS--FPLGISKLVSLQQLDLSYSSIKEL-----PREL 601 (911)
Q Consensus 534 ~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~i~~l-----p~~~ 601 (911)
.++|+.|++++|.++......+..+ .+|++|+|++|.++. +..-...+.+|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999998776544444333 689999999998873 222234567899999999988743 2222
Q ss_pred -cCCccccEEeccccccccc-----cChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEE
Q 042327 602 -YALVNLKCLNLEHAEELIT-----IPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLT 675 (911)
Q Consensus 602 -~~l~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 675 (911)
...++|++|+|++|. ++. ++.. +..+++|++|++++|..... + .......+...++|+.|+
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~----------g-~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDE----------G-LELLAAQLDRNRQLQELN 217 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHH----------H-HHHHHHHGGGCSCCCEEE
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcH----------H-HHHHHHHHhcCCCcCeEE
Confidence 246789999999984 443 3332 57788999999998854311 0 122345667778899999
Q ss_pred EEEcchhhH
Q 042327 676 FTLRSVRAL 684 (911)
Q Consensus 676 l~~~~~~~l 684 (911)
++.|.+...
T Consensus 218 Ls~N~i~~~ 226 (372)
T 3un9_A 218 VAYNGAGDT 226 (372)
T ss_dssp CCSSCCCHH
T ss_pred CCCCCCCHH
Confidence 888877653
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.46 E-value=2.1e-07 Score=91.31 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=41.4
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++||+..++++.+.+.....+.+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987766778999999999999999998876
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.44 E-value=1.4e-06 Score=95.48 Aligned_cols=194 Identities=14% Similarity=0.103 Sum_probs=109.4
Q ss_pred CcccchhhHHHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++|++..++.+.+.+..++ .+.+.|+|+.|+||||+|+.+++.. .....+. ...+........+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 358999999999999887654 3578899999999999999998876 2111110 000000000111111000
Q ss_pred C-----CC-CcccccCHHHHHHHHHHH-ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchh-Hh-hh
Q 042327 233 F-----FD-DSWRAKSVEEKALEIFNS-LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEE-VC-GF 301 (911)
Q Consensus 233 ~-----~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~-v~-~~ 301 (911)
. .. .........+....+... ..+++.++|+||++.. ..+..+...+. ....+..+|++|.... +. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le-~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHH-SCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHh-cCCCceEEEEEeCChHhCcHHH
Confidence 0 00 000111222222222111 2356789999999643 22333333332 2234567777776443 11 11
Q ss_pred ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 302 MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
......+++.+++.++..+++.+.+.......+ .+....+++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 223467899999999999999877643221111 2456789999999998776554
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.33 E-value=3.9e-07 Score=93.14 Aligned_cols=173 Identities=10% Similarity=0.087 Sum_probs=101.0
Q ss_pred Ccccch---hhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHH
Q 042327 154 PTVVGL---ESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 154 ~~~vGr---~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
+.++|. +..++.+..+......+.+.|+|++|+||||+|+.+++... .....+.|+.++...+. +.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~- 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STA- 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGG-
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHH-
Confidence 346763 34556666666555667899999999999999999998872 12334567765442110 000
Q ss_pred cCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc----cccccccCCCCCCCC-cEEEEEcCchh--------
Q 042327 231 MGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD----LTKVGVPLPRPKNMA-SKVVFTTRSEE-------- 297 (911)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~~~~~~~-s~iivTtR~~~-------- 297 (911)
..+.+ .++.+||+||++.... ...+...+......+ .++|+||+...
T Consensus 98 -------------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 98 -------------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp -------------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred -------------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 00111 3456899999964321 111211111000112 25777776432
Q ss_pred -HhhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 298 -VCGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 298 -v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
+...+.....+.+.+++.++..+++.+.+.......+ .+....+++.++|.+-.+..+.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 1122222368899999999999999987743221122 3566788899999887665543
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.30 E-value=7.1e-06 Score=90.53 Aligned_cols=78 Identities=13% Similarity=0.208 Sum_probs=40.2
Q ss_pred ccCcccEEEeeccccccccc--ccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCcc
Q 042327 752 VFHGLHTVHIEVCLTLKDLT--FLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSI 829 (911)
Q Consensus 752 ~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i 829 (911)
.+++|+.+.+.. .++.++ .+..+.+|+.+.|.+ .++.|.. ..+.++.+|+.+.|.. +++.|
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-----------~aF~~C~~L~~i~ip~--sv~~I 348 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-----------DAFAGCEQLERIAIPS--SVTKI 348 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-----------TTTTTCTTCCEEEECT--TCCBC
T ss_pred cccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH-----------hHhhCCCCCCEEEECc--ccCEE
Confidence 455666666642 344443 255566666666643 2333311 1455666666666642 34444
Q ss_pred CC-CCCCCCCccEEeeCC
Q 042327 830 YW-KPLSLPQLKEMKVDG 846 (911)
Q Consensus 830 ~~-~~~~~~~L~~L~l~~ 846 (911)
.. .+..+++|+.+++.+
T Consensus 349 ~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CGGGGTTCTTCCEEEESS
T ss_pred hHhHhhCCCCCCEEEECC
Confidence 33 244566666666553
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.26 E-value=3.1e-06 Score=94.27 Aligned_cols=182 Identities=18% Similarity=0.127 Sum_probs=103.9
Q ss_pred ccc-chhh--HHHHHHHHHcCCC-CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHH
Q 042327 155 TVV-GLES--TLQKVWRCIVEDP-AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 155 ~~v-Gr~~--~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
.|+ |... ....+.......+ ...+.|+|++|+||||||+.+++.... ...-..++++++.. +...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~~------~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSEK------FLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHHH------HHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHHH------HHHHHHHH
Confidence 344 6433 2334444444433 678999999999999999999987621 11012345554332 33344443
Q ss_pred cCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc----cccccccCCCCCCCCcEEEEEcCch---------h
Q 042327 231 MGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD----LTKVGVPLPRPKNMASKVVFTTRSE---------E 297 (911)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~~~~~~~s~iivTtR~~---------~ 297 (911)
+... .. ..+.+.+..+.-+|+|||++.... .+.+...+......|..||+||.+. .
T Consensus 179 ~~~~-------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 3211 11 122333343667999999964321 1222222210123467888888763 2
Q ss_pred HhhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHH
Q 042327 298 VCGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALIT 357 (911)
Q Consensus 298 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~ 357 (911)
+...+.....+.+++++.++..+++.+.+.......++ +....|++.++|.+-.+..
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 22333334678999999999999999887432222222 3466788899998865543
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=5.1e-06 Score=94.73 Aligned_cols=187 Identities=13% Similarity=0.111 Sum_probs=107.2
Q ss_pred CcccchhhHHHHHHHHHcC-----------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC
Q 042327 154 PTVVGLESTLQKVWRCIVE-----------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK 216 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~ 216 (911)
.+++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. . + .++.+.++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~----~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-G----Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-T----C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-C----C-CEEEEeCCC
Confidence 4589999999999999865 134789999999999999999999986 1 1 234455554
Q ss_pred ccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHH--HHHccCCcEEEEEcccccccc-----cccccccCCCCCCCCcEE
Q 042327 217 DLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEI--FNSLSEKKFVLLLDDVWERVD-----LTKVGVPLPRPKNMASKV 289 (911)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l--~~~l~~k~~LlVlDdv~~~~~-----~~~~~~~~~~~~~~~s~i 289 (911)
..... +....+....... ......... .....+++.+|+||+++.... +..+...+. ..+..|
T Consensus 113 ~~~~~-~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~---~~~~~i 182 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPL 182 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCE
T ss_pred cchHH-HHHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH---hcCCCE
Confidence 44433 2222222111000 000000000 001236788999999965321 122222111 123345
Q ss_pred EEEcCchh---HhhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC-hhHHHHHH
Q 042327 290 VFTTRSEE---VCGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL-PLALITIG 359 (911)
Q Consensus 290 ivTtR~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~-Plai~~~~ 359 (911)
|+++.... +.........+.+++++.++..+.+.+.+.......++ +....|++.++|. +-++..+.
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 65554432 22222334578999999999999998876433222222 3466788999995 45555543
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.23 E-value=6.4e-06 Score=86.40 Aligned_cols=177 Identities=16% Similarity=0.183 Sum_probs=101.3
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+.++|.+..++++.+.+.. ...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-...
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~~ 90 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVKK 90 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCCC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHHh
Confidence 4589999999998877632 345679999999999999999999886 222 223332221100
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc------------c----cccccccCC-CCC
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV------------D----LTKVGVPLP-RPK 283 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~~~-~~~ 283 (911)
............+......++.+|+|||++... . +..+...+. ...
T Consensus 91 -----------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 91 -----------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -----------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -----------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 001111112222222334567899999995420 0 111111110 012
Q ss_pred CCCcEEEEEcCchhHhh-----hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCC-ChhHHHH
Q 042327 284 NMASKVVFTTRSEEVCG-----FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGG-LPLALIT 357 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g-~Plai~~ 357 (911)
..+..||.||....... .......+.++..+.++..+++...+.......+.. ...+++.+.| .|-.|..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 34567888887554321 112234789999999999999998875543222223 3456677776 4544443
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=8.5e-07 Score=83.76 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=52.4
Q ss_pred ccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccccc--ccccccC----CCccEEEEecCcchhHHh
Q 042327 721 HLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTLKD--LTFLVFA----PNLKYAEILNCPAMEEII 794 (911)
Q Consensus 721 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l----~~L~~L~L~~c~~l~~i~ 794 (911)
.|+.|++++|. +++....... .+++|++|+|++|..+++ +..+..+ ++|++|+|++|+.+++-.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~---------~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME---------GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT---------TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhc---------CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 56777777765 4433332222 567777777777766665 2334432 467777777777666542
Q ss_pred ccCCCCCcccccCCCCcccccceeccCCCCccCcc
Q 042327 795 SAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSI 829 (911)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i 829 (911)
. ..+..+++|+.|+|++|+.+++.
T Consensus 132 l-----------~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 132 I-----------IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp H-----------HHGGGCTTCCEEEEESCTTCCCH
T ss_pred H-----------HHHhcCCCCCEEECCCCCCCCch
Confidence 1 13445677777777777777653
No 175
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=5.2e-06 Score=90.17 Aligned_cols=193 Identities=11% Similarity=0.154 Sum_probs=109.0
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-ceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF-DCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
..++|++..++.+..++..+....+.|+|+.|+||||+|+.+.+... ....+ ..++.+..+.......+...+.....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY-GPDLMKSRILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH-HHHHHTTSEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC-CCcccccceEEEccccccchHHHHHHHHHHhh
Confidence 45899999999999999877555589999999999999999988751 00001 12333443332233222111111100
Q ss_pred CCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEEcCchh-Hhhh-ccccceE
Q 042327 233 FFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFTTRSEE-VCGF-MEAHRKF 308 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivTtR~~~-v~~~-~~~~~~~ 308 (911)
.... ..... .....-.+++-+|++|++.... ....+...+. ......++|++|.... +... ......+
T Consensus 116 ~~~~--~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 116 LTVS--KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTME-TYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp SCCC--CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hccc--ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHH-hcCCCceEEEEeCchhhCcchhhccCceE
Confidence 0000 00000 0001112456799999986432 1222322222 1223566777765443 2111 1123478
Q ss_pred EeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 309 KMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 309 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
.+.+++.++....+.+.+.......+ .+....|++.++|.|..+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999887754332222 356788999999999865444
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=8.8e-07 Score=83.66 Aligned_cols=87 Identities=9% Similarity=0.091 Sum_probs=56.7
Q ss_pred CcccEEEeeccccccc--ccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCc----ccccceeccCCCCccC
Q 042327 754 HGLHTVHIEVCLTLKD--LTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNP----FAKLHYLGLVNLPNLR 827 (911)
Q Consensus 754 ~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~L~ 827 (911)
.+|++|+|++|. +++ +..+..+++|+.|+|++|..+++-... .+.. .++|+.|+|++|++++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-----------~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-----------RLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-----------HHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-----------HHHhcccccCCCCEEEcCCCCcCC
Confidence 457888888874 554 445667788888888888776654210 1222 3568888888887776
Q ss_pred ccCC-CCCCCCCccEEeeCCCCCCCC
Q 042327 828 SIYW-KPLSLPQLKEMKVDGCFGLKK 852 (911)
Q Consensus 828 ~i~~-~~~~~~~L~~L~l~~C~~L~~ 852 (911)
+-.. ....+++|+.|++++|++++.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 5322 133577888888888877775
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.17 E-value=2.4e-05 Score=81.31 Aligned_cols=196 Identities=15% Similarity=0.137 Sum_probs=103.8
Q ss_pred CcccchhhHHHHHHH-------HHc---CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHH
Q 042327 154 PTVVGLESTLQKVWR-------CIV---EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYI 223 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~-------~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 223 (911)
+.++|....+++++. .+. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------
Confidence 346777766665555 332 3456789999999999999999999986 2222 22222211
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc-----------ccc-ccccccCCC--CCCCCcEE
Q 042327 224 QEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER-----------VDL-TKVGVPLPR--PKNMASKV 289 (911)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~-~~~~~~~~~--~~~~~s~i 289 (911)
+.... ...........+......+..+|+|||++.. ..+ ..+...+.. .......|
T Consensus 101 -------~~g~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 -------MIGFS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -------CTTCC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -------hcCCc---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00000 0000111222222333467889999998542 011 111111110 12234456
Q ss_pred EEEcCchhHhhh---cc-ccceEEeccCCH-HHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCC------ChhHHHHH
Q 042327 290 VFTTRSEEVCGF---ME-AHRKFKMVCLSD-NDSWDLFQQKVGKEILNSHPDILELAQTVARECGG------LPLALITI 358 (911)
Q Consensus 290 ivTtR~~~v~~~---~~-~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g------~Plai~~~ 358 (911)
|.||........ .+ ....+.+++++. ++...++.+... .+ .+....+++.+.| .+-++..+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 777776644322 11 145688899988 666666655321 11 2346678888877 44444444
Q ss_pred HhhhcCCCCHHHHHHHHHHHhh
Q 042327 359 GRAMACKKTPEEWRYAIQLLSS 380 (911)
Q Consensus 359 ~~~l~~~~~~~~w~~~~~~l~~ 380 (911)
-.+.. ......+..++..+..
T Consensus 243 ~~a~~-~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 243 EMSLQ-MDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHHTT-SCGGGHHHHHHHHHHH
T ss_pred HHHhh-hchHHHHHHHHHHHHH
Confidence 43332 2344566666665544
No 178
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=3.3e-05 Score=85.17 Aligned_cols=284 Identities=10% Similarity=0.042 Sum_probs=155.6
Q ss_pred CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccC-ccccCCCCCCEEeecCCCCcccccc-ccCCccc
Q 042327 530 EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFP-LGISKLVSLQQLDLSYSSIKELPRE-LYALVNL 607 (911)
Q Consensus 530 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L 607 (911)
.|.+|.+|+.+.+..+ ++.++...|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++.++.. +.++..+
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 4788999999999754 78888888999999999999765 66664 45777888888777654 5544433 3334333
Q ss_pred cEEeccccccccccChhhhcCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEEEEcchhhHHHH
Q 042327 608 KCLNLEHAEELITIPQQVISNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTFTLRSVRALQLI 687 (911)
Q Consensus 608 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~l 687 (911)
...... ....+...++.++++|+.+.+..+.. .+ ....+.++.+|+.+.+..+ +..+...
T Consensus 143 ~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~~~-~I---------------~~~~F~~c~~L~~i~l~~~-~~~I~~~ 202 (394)
T 4fs7_A 143 EITIPE---GVTVIGDEAFATCESLEYVSLPDSME-TL---------------HNGLFSGCGKLKSIKLPRN-LKIIRDY 202 (394)
T ss_dssp EEECCT---TCCEECTTTTTTCTTCCEEECCTTCC-EE---------------CTTTTTTCTTCCBCCCCTT-CCEECTT
T ss_pred ccccCc---cccccchhhhcccCCCcEEecCCccc-ee---------------ccccccCCCCceEEEcCCC-ceEeCch
Confidence 333322 23456666688999999998875321 11 1234566677776655311 1110000
Q ss_pred HhhccccccceeeEecccCCCCccccCChhcccccceEEEcccCCccceeeccccccccCCCCCccCcccEEEeeccccc
Q 042327 688 LISHKLRSCTQALFLQSFNDSTSLDVSPLADLKHLYRLRVFGCRKLEELKMDYKRLVQATRQPCVFHGLHTVHIEVCLTL 767 (911)
Q Consensus 688 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l 767 (911)
.. ..+..++.+.+.. ...... .......+|+.+.+.. .+..+...... .+.+|+.+.+..+..-
T Consensus 203 ~F--~~~~~L~~i~~~~--~~~~i~-~~~~~~~~l~~i~ip~--~~~~i~~~~f~---------~~~~l~~~~~~~~~~~ 266 (394)
T 4fs7_A 203 CF--AECILLENMEFPN--SLYYLG-DFALSKTGVKNIIIPD--SFTELGKSVFY---------GCTDLESISIQNNKLR 266 (394)
T ss_dssp TT--TTCTTCCBCCCCT--TCCEEC-TTTTTTCCCCEEEECT--TCCEECSSTTT---------TCSSCCEEEECCTTCE
T ss_pred hh--ccccccceeecCC--CceEee-hhhcccCCCceEEECC--Cceeccccccc---------ccccceeEEcCCCcce
Confidence 00 0011111111111 000000 0111234555555532 22222222211 4566777777554111
Q ss_pred ccccccccCCCccEEEEecCcchhHHhccCCCCCcccccCCCCcccccceeccCCCCccCccCCC-CCCCCCccEEeeCC
Q 042327 768 KDLTFLVFAPNLKYAEILNCPAMEEIISAGKFADVPEVMGNLNPFAKLHYLGLVNLPNLRSIYWK-PLSLPQLKEMKVDG 846 (911)
Q Consensus 768 ~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~l~~ 846 (911)
-.-..+..+++|+.+...... +. . ..+..+.+|+.+.+.+ +++.|... +..+++|+.+++.+
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~-i~---~-----------~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVI-VP---E-----------KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSE-EC---T-----------TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT
T ss_pred eeccccccccccceeccCcee-ec---c-----------cccccccccccccccc--ccceechhhhcCCCCCCEEEeCC
Confidence 111235566777776665421 11 1 1466778888888864 46666543 55678899888853
Q ss_pred CCCCCCCCCCCCCCCCcceEEEccc
Q 042327 847 CFGLKKLPLKCNSAQEQTIVVHGDK 871 (911)
Q Consensus 847 C~~L~~lP~~~~~~l~~L~~~~~~~ 871 (911)
+++.++......+.+|+.+..+.
T Consensus 330 --~v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 330 --LVEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp --TCCEECTTTTTTCTTCCEECCCT
T ss_pred --cccEEhHHhccCCCCCCEEEECc
Confidence 47777766666666666665543
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=4.1e-06 Score=90.42 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=42.1
Q ss_pred CCCCCccEEEccCCCCC---------CcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEEeecCCCCcc-ccccc
Q 042327 532 PTCPHLLTLFLDNNESL---------KIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQLDLSYSSIKE-LPREL 601 (911)
Q Consensus 532 ~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~~ 601 (911)
..+++|+.|.+.++... .-...++..+++|+.|+|++|.-..+|. +. +++|++|+|..|.+.. ....+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 34566777766543211 0122445666777777777662123333 32 5677777776666541 11122
Q ss_pred c--CCccccEEecc
Q 042327 602 Y--ALVNLKCLNLE 613 (911)
Q Consensus 602 ~--~l~~L~~L~l~ 613 (911)
. .+++|++|+|+
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 2 46667776664
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.11 E-value=2.7e-05 Score=86.39 Aligned_cols=174 Identities=17% Similarity=0.146 Sum_probs=102.5
Q ss_pred CcccchhhHH---HHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHHHH
Q 042327 154 PTVVGLESTL---QKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVIAK 229 (911)
Q Consensus 154 ~~~vGr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~ 229 (911)
+.++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+.+.. ...| +.++.. .....+ +.++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~~- 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REAI- 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHHH-
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHHH-
Confidence 4589998887 677778877777889999999999999999999986 2222 222221 122211 1111
Q ss_pred HcCCCCCcccccCHHHHHHHHH-HHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEE-EEcCchh--H-hhhc
Q 042327 230 QMGFFDDSWRAKSVEEKALEIF-NSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVV-FTTRSEE--V-CGFM 302 (911)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~ii-vTtR~~~--v-~~~~ 302 (911)
.... ....+++.+|+||+++.. ...+.+...+. .+ ...+| .||.+.. + ....
T Consensus 96 ------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le--~~-~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 96 ------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE--DG-TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp ------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHH--TT-SCEEEEEESSCGGGSSCHHHH
T ss_pred ------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh--cC-ceEEEecCCCCcccccCHHHh
Confidence 1111 112467889999999643 22333333332 12 23344 3555543 1 1222
Q ss_pred cccceEEeccCCHHHHHHHHHHHhcCcccC---CC-ccHHHHHHHHHHHcCCChhHHHHH
Q 042327 303 EAHRKFKMVCLSDNDSWDLFQQKVGKEILN---SH-PDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~---~~-~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
....++.+++++.++...++.+.+...... .. .--.+....+++.++|.+-.+..+
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 334578899999999999999877541100 00 112345677888899987655443
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=1.2e-05 Score=87.22 Aligned_cols=195 Identities=10% Similarity=0.085 Sum_probs=102.8
Q ss_pred CcccchhhHHHHHHHHH-cCCCCeEEEEEcCCCCcHHHHHHHHHhhcccC-CC--CCce--------------------E
Q 042327 154 PTVVGLESTLQKVWRCI-VEDPAVIIGIYGMGGVGKTTLLTHINNKFLEG-PN--TFDC--------------------V 209 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--~F~~--------------------~ 209 (911)
+.++|.+..++.+.+++ ..+....+.|+|+.|+||||+|+.++...... .+ .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45899999999998888 66555459999999999999999998853110 01 1111 1
Q ss_pred EEEEeCCcc-CHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCCCCCCC
Q 042327 210 IWVVVSKDL-RVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMA 286 (911)
Q Consensus 210 ~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 286 (911)
+.+..+... ......+++++.+.... ...... .+ ..+.+++-++|+|++.... ....+...+. ....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le-~~~~~ 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQME------QVDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTME-KYSKN 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTT------C--------------CCEEEEEECTTSSCHHHHHHHHHHHH-HSTTT
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhc------cccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHH-hhcCC
Confidence 111111100 00001122222221100 000000 00 0023467799999996521 1222222221 11235
Q ss_pred cEEEEEcCchh-Hh-hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 287 SKVVFTTRSEE-VC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 287 s~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
..+|++|.+.. +. ...+....+++.+++.++..+.+.+.+.......+. .+....|++.++|.+..+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 77777776542 21 112233678999999999999998876433211110 1456788899999887655443
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.07 E-value=3.7e-05 Score=79.36 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=97.2
Q ss_pred CcccchhhHHHHHHHHHc---C---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIV---E---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..++.+.+.+. . ...+.|.|+|++|+|||++|+.+++.. ... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh-
Confidence 458999888777755442 1 233568899999999999999999986 222 234443331110
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc-------------cc----ccccccCCC-CC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV-------------DL----TKVGVPLPR-PK 283 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~----~~~~~~~~~-~~ 283 (911)
............+.......+.+|+|||++... .. ..+...+.. ..
T Consensus 79 ----------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 79 ----------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ----------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ----------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 001111122222222334567899999996431 11 111111110 12
Q ss_pred CCCcEEEEEcCchhHh-h-hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHH
Q 042327 284 NMASKVVFTTRSEEVC-G-FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALIT 357 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~-~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~ 357 (911)
..+..||.||...... . .. .....+.++..+.++-.+++...+...... .........+++.+.|.+- .|..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHHHH
Confidence 2355677777654321 1 11 123567888999999999998876433211 1222234678888887643 4433
Q ss_pred H
Q 042327 358 I 358 (911)
Q Consensus 358 ~ 358 (911)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.06 E-value=8.8e-06 Score=86.50 Aligned_cols=154 Identities=13% Similarity=0.179 Sum_probs=85.2
Q ss_pred cccchhhHHHHHHHHHc---------------CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC
Q 042327 155 TVVGLESTLQKVWRCIV---------------EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR 219 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~ 219 (911)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.... .......-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH--
Confidence 47899888888776543 234457899999999999999988887621 111111112333211
Q ss_pred HHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccc-----------cccccccccCCCCCCCCcE
Q 042327 220 VEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER-----------VDLTKVGVPLPRPKNMASK 288 (911)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~~~~~~~~~s~ 288 (911)
.+... ............+... +.-+|+||+++.. .....+...+. ....+..
T Consensus 109 ----------~l~~~---~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~ 171 (309)
T 3syl_A 109 ----------DLVGQ---YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NNRDDLV 171 (309)
T ss_dssp ----------GTCCS---STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-HCTTTCE
T ss_pred ----------Hhhhh---cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-cCCCCEE
Confidence 00000 0011111122222222 3459999999732 11122222222 2334567
Q ss_pred EEEEcCchhHhh-------hc-cccceEEeccCCHHHHHHHHHHHhcC
Q 042327 289 VVFTTRSEEVCG-------FM-EAHRKFKMVCLSDNDSWDLFQQKVGK 328 (911)
Q Consensus 289 iivTtR~~~v~~-------~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 328 (911)
||.||....... .. .....+.+++++.++-.+++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 888876543211 01 12367899999999999999887643
No 184
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=8.6e-05 Score=81.78 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=49.4
Q ss_pred CCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCccc-CccccCCCCCCEEeecCCCCccccccccCCccccE
Q 042327 531 IPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSF-PLGISKLVSLQQLDLSYSSIKELPRELYALVNLKC 609 (911)
Q Consensus 531 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~ 609 (911)
|..|.+|+.+.+..+ +..++...|..+..|+.+.+..+ +..+ ...+..+.+|+.+.+..+ ++.+........+|+.
T Consensus 110 F~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~ 186 (394)
T 4gt6_A 110 FMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQ 186 (394)
T ss_dssp TTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSE
T ss_pred chhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeE
Confidence 344444444444332 33444444555555555555432 2222 223445555666655443 4444444444455666
Q ss_pred EeccccccccccChhhhcCCccccEEEcc
Q 042327 610 LNLEHAEELITIPQQVISNFSRLHVLRMY 638 (911)
Q Consensus 610 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 638 (911)
+.+..+ +..+....+..+.+|......
T Consensus 187 i~ip~~--~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 187 IHIPAK--VTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp EEECTT--CCEECTTTTTTCTTCCEEEEC
T ss_pred EEECCc--ccccccchhhhccccceeccc
Confidence 666543 334444445666666655443
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.99 E-value=9.2e-05 Score=80.06 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=101.8
Q ss_pred CcccchhhHHHHHHHHHcC------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIVE------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
+.++|.+..++.+.+.+.. ...+.|.|+|+.|+|||++|+.+++.. .. ..+.+.++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhcc-
Confidence 4589999999988877631 245688999999999999999999876 22 2344444322110
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHH-HccCCcEEEEEcccccccc-------------cccccccCC---CCCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFN-SLSEKKFVLLLDDVWERVD-------------LTKVGVPLP---RPKN 284 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~---~~~~ 284 (911)
+.. ........+.. .-..++.+|+||+++.... ...+...+. ....
T Consensus 157 ----------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 157 ----------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ----------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ----------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 000 11122222222 2235678999999953210 111111111 0112
Q ss_pred CCcEEEEEcCchhHh-hh--ccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCC-ChhHHHHHH
Q 042327 285 MASKVVFTTRSEEVC-GF--MEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGG-LPLALITIG 359 (911)
Q Consensus 285 ~~s~iivTtR~~~v~-~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g-~Plai~~~~ 359 (911)
.+..||.||...... .. -.....+.+...+.++..+++...+........ .+....+++.+.| .+-.+..+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566677554221 11 122346788888999999998887644321111 2456778888888 555665554
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.98 E-value=0.00021 Score=75.90 Aligned_cols=180 Identities=16% Similarity=0.169 Sum_probs=101.5
Q ss_pred CcccchhhHHHHHHHHHcC------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIVE------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..++.+.+.+.. ...+.|.++|++|+|||+||+.+++.. . .. ..+.+..+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 4589999988888776631 134678999999999999999999875 1 11 223333332110
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHH-HccCCcEEEEEcccccccc-------------cccccccCCC--CCCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFN-SLSEKKFVLLLDDVWERVD-------------LTKVGVPLPR--PKNM 285 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~--~~~~ 285 (911)
.+...... ....+.+ .-..++.+|+||+++.... ...+...+.. ....
T Consensus 85 ---------------~~~g~~~~-~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWLGESEK-LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSCCSCHH-HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhhhHHHH-HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 00111222 2222322 2345788999999964310 0011111100 1133
Q ss_pred CcEEEEEcCchhHhh---hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC-hhHHHHHH
Q 042327 286 ASKVVFTTRSEEVCG---FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL-PLALITIG 359 (911)
Q Consensus 286 ~s~iivTtR~~~v~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~-Plai~~~~ 359 (911)
+..||.||....... .-.....+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 455666665443211 0123456788888999999999887754321111 23456788889886 54455554
No 187
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=7.1e-06 Score=88.51 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=60.6
Q ss_pred CCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcc-cCccc--cCCCCCCEEeecCC--------CCcccccc
Q 042327 532 PTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKS-FPLGI--SKLVSLQQLDLSYS--------SIKELPRE 600 (911)
Q Consensus 532 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~i--~~l~~L~~L~L~~~--------~i~~lp~~ 600 (911)
..+|+|+.|.+++|.-..+++ +. +++|+.|+|..|.++. ....+ ..+++|++|+|+.+ .+..+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 344556666665552112222 22 5556666666555431 11122 24556666665421 12122111
Q ss_pred c--cCCccccEEeccccccccccChhhh--cCCccccEEEcccccccccccccccccccCCchhHHHhhcCCCCCceEEE
Q 042327 601 L--YALVNLKCLNLEHAEELITIPQQVI--SNFSRLHVLRMYGTVSLNFLESLKDSILFGGEEVLAEELLGLESLEVLTF 676 (911)
Q Consensus 601 ~--~~l~~L~~L~l~~~~~l~~lp~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 676 (911)
+ ..+++|++|++++|......+..+. ..+++|++|+++.|..... + .......+..+++|+.|++
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~----------G-~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE----------G-ARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH----------H-HHHHHTTHHHHTTCSEEEC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH----------H-HHHHHhhcccCCcceEEEC
Confidence 2 2355666666665532211111111 2455666666665432210 0 1223444445566666666
Q ss_pred EEcchh
Q 042327 677 TLRSVR 682 (911)
Q Consensus 677 ~~~~~~ 682 (911)
+.|.+.
T Consensus 315 ~~n~i~ 320 (362)
T 2ra8_A 315 KYNYLS 320 (362)
T ss_dssp CSBBCC
T ss_pred CCCcCC
Confidence 666554
No 188
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=2e-06 Score=87.90 Aligned_cols=82 Identities=26% Similarity=0.218 Sum_probs=52.6
Q ss_pred hcCCcccEEEccCCCCccc---CccccCCCCCCEEeecCCCCccccccccCCc--cccEEeccccccccccCh------h
Q 042327 556 QYMHSLKVLNLSRIKLKSF---PLGISKLVSLQQLDLSYSSIKELPRELYALV--NLKCLNLEHAEELITIPQ------Q 624 (911)
Q Consensus 556 ~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~~~~l~--~L~~L~l~~~~~l~~lp~------~ 624 (911)
.++++|+.|+|++|.|+.+ |..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|+....+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4567777777777776654 344556777777777777777652 344444 777777777754444441 3
Q ss_pred hhcCCccccEEEcc
Q 042327 625 VISNFSRLHVLRMY 638 (911)
Q Consensus 625 ~i~~l~~L~~L~l~ 638 (911)
++..+++|+.|+-.
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 35677777777543
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.94 E-value=0.00017 Score=75.93 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=99.7
Q ss_pred CcccchhhHHHHHHHHHcC------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIVE------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
+.++|.+..++.+.+.+.. ...+.|.|+|++|+||||+|+.+++.. ... .+.+.++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 4589999999988877632 235688999999999999999999886 222 23344332111
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHH-HccCCcEEEEEccccccccc-------------cccc---ccCCC-CC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFN-SLSEKKFVLLLDDVWERVDL-------------TKVG---VPLPR-PK 283 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~-------------~~~~---~~~~~-~~ 283 (911)
. ...........+.. ....++.+|+||+++....- ..+. ..++. ..
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 01112222222222 22456789999999643110 0010 11110 11
Q ss_pred CCCcEEEEEcCchhH-----hhhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHH
Q 042327 284 NMASKVVFTTRSEEV-----CGFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALIT 357 (911)
Q Consensus 284 ~~~s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~ 357 (911)
+.+..||.||..... .. .....+.+...+.++...++...+.......+ .+....+++.+.|.+- ++..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 234566777765432 22 22356777777888888888876643321111 2356678888988775 4544
Q ss_pred HH
Q 042327 358 IG 359 (911)
Q Consensus 358 ~~ 359 (911)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.94 E-value=4.3e-05 Score=83.34 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=36.9
Q ss_pred CcccchhhHHHH---HHHHHcCCCC--eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQK---VWRCIVEDPA--VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~---l~~~l~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999988766 4555555433 589999999999999999999987
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.93 E-value=0.00013 Score=77.81 Aligned_cols=179 Identities=18% Similarity=0.164 Sum_probs=102.5
Q ss_pred CcccchhhHHHHHHHHHc----------C--CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIV----------E--DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
+.++|.+..++.+.+.+. . ...+.|.++|++|+|||++|+.+++.. ...| +.+..+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~~~----- 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSSD----- 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEHHH-----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEchHH-----
Confidence 458999999999988772 1 124578999999999999999999986 2222 2332211
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHH-ccCCcEEEEEcccccccc-------------cccccccCCC--CCCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS-LSEKKFVLLLDDVWERVD-------------LTKVGVPLPR--PKNM 285 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~--~~~~ 285 (911)
+ .... ....+.....+.+. -..++.+|+||+++.... ...+...+.. ....
T Consensus 87 -l----~~~~--------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 87 -L----VSKW--------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp -H----HTTT--------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred -H----hhcc--------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1 1000 01122223333322 245678999999964311 1111111100 1234
Q ss_pred CcEEEEEcCchhHhh---hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCC-ChhHHHHHH
Q 042327 286 ASKVVFTTRSEEVCG---FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGG-LPLALITIG 359 (911)
Q Consensus 286 ~s~iivTtR~~~v~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g-~Plai~~~~ 359 (911)
+..||.||....... .-.....+.+...+.++-.+++...+........ ......+++.+.| .+-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666776543211 0123456788889999999999988765431111 2345678888887 454555444
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=4.4e-05 Score=82.15 Aligned_cols=177 Identities=12% Similarity=0.165 Sum_probs=101.7
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCc-eEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFD-CVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
..++|.+..++.+...+..++.+.+.++|+.|+||||+|+.+++... ...+. .+.-+..+.......+.. +
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~-~----- 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRN-Q----- 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHT-H-----
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHH-H-----
Confidence 34789888889998888877665589999999999999999998862 11111 122222222111111111 1
Q ss_pred CCCCcccccCHHHHHHHHHHH---ccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchh-Hhh-hcccc
Q 042327 233 FFDDSWRAKSVEEKALEIFNS---LSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEE-VCG-FMEAH 305 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~---l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~-v~~-~~~~~ 305 (911)
...+.+. +.+.+-++|+|+++.. .....+...+. ......++|++|.... +.. ..+..
T Consensus 97 --------------i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 --------------IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIE-RYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp --------------HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred --------------HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEecCccccchhHHhhc
Confidence 1111110 1234678999999542 12222222221 1123566777765432 111 11223
Q ss_pred ceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHH
Q 042327 306 RKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALI 356 (911)
Q Consensus 306 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~ 356 (911)
..+.+.+++.++..+.+.+.+.......+ .+..+.+++.++|.+--+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 47889999999999988877643321122 2456788889999886443
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.93 E-value=5.8e-05 Score=80.64 Aligned_cols=166 Identities=16% Similarity=0.119 Sum_probs=92.0
Q ss_pred HHHHHHHHcCC--CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccc
Q 042327 163 LQKVWRCIVED--PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRA 240 (911)
Q Consensus 163 ~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (911)
...+...+... ....+.|+|++|+||||||+.+++..... . ..++++++. .+...+...+..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~~------~~~~~~~~~~~~------- 86 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSAD------DFAQAMVEHLKK------- 86 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEHH------HHHHHHHHHHHH-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEHH------HHHHHHHHHHHc-------
Confidence 34444555443 34678999999999999999999876211 1 234455432 223333333210
Q ss_pred cCHHHHHHHHHHHccCCcEEEEEcccccccc----cccccccCCCCCCCCcEEEEEcCchh---------Hhhhccccce
Q 042327 241 KSVEEKALEIFNSLSEKKFVLLLDDVWERVD----LTKVGVPLPRPKNMASKVVFTTRSEE---------VCGFMEAHRK 307 (911)
Q Consensus 241 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~~~~~~~s~iivTtR~~~---------v~~~~~~~~~ 307 (911)
...... .+.+ .+.-+|+|||+..... ...+...+......+..||+||.... +...+.....
T Consensus 87 ~~~~~~----~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 87 GTINEF----RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp TCHHHH----HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred CcHHHH----HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 111111 1222 2356999999965321 12222221101123567888876431 2222233357
Q ss_pred EEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhH
Q 042327 308 FKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLA 354 (911)
Q Consensus 308 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pla 354 (911)
+.+++ +.++..+++...+.......+ .+....+++.+ |..-.
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 89999 999999999988743222222 34567788888 76643
No 194
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.91 E-value=0.00013 Score=78.13 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCceEEEEEeCCccC
Q 042327 160 ESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGP-------------------NTFDCVIWVVVSKDLR 219 (911)
Q Consensus 160 ~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~vs~~~~ 219 (911)
+...+.+.+.+..++. +.+.++|+.|+||||+|+.+.+...... .++| ..++.....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~-- 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG-- 84 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT--
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc--
Confidence 4556777777776654 5799999999999999999988762111 0122 122221100
Q ss_pred HHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-----cCCcEEEEEccccccc--ccccccccCCCCCCCCcEEEEE
Q 042327 220 VEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-----SEKKFVLLLDDVWERV--DLTKVGVPLPRPKNMASKVVFT 292 (911)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~s~iivT 292 (911)
......++.. .+.+.+ .+++-++|+|+++... ....+...+. ....++.+|++
T Consensus 85 ------------------~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lE-ep~~~~~~Il~ 144 (334)
T 1a5t_A 85 ------------------KNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLE-EPPAETWFFLA 144 (334)
T ss_dssp ------------------CSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHT-SCCTTEEEEEE
T ss_pred ------------------CCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhc-CCCCCeEEEEE
Confidence 0111222222 222222 3567899999996532 2233333333 23346677777
Q ss_pred cCchh-Hh-hhccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHHH
Q 042327 293 TRSEE-VC-GFMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITIG 359 (911)
Q Consensus 293 tR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~~ 359 (911)
|.+.. +. ...+....+++.+++.++..+.+.+... .+ .+.+..+++.++|.|..+..+.
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 76653 22 2223345789999999999999987751 11 2345778999999998765543
No 195
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.90 E-value=5.7e-05 Score=80.73 Aligned_cols=174 Identities=10% Similarity=0.077 Sum_probs=98.6
Q ss_pred CcccchhhHHHHHHHHHcCCCC-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcC
Q 042327 154 PTVVGLESTLQKVWRCIVEDPA-VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMG 232 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 232 (911)
+.++|.+..++.+.+++..+.. +++.+.|+.|+||||+|+.+++.. . ...+.+..+.. ....+...+.....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i~~~~~~~~~ 98 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFVRGPLTNFAS 98 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHHHTHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHHHHHHHHHHh
Confidence 4589999999999999987544 567777889999999999999886 1 22344444332 12211111111000
Q ss_pred CCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc---ccccccccCCCCCCCCcEEEEEcCchhH-hh-hccccce
Q 042327 233 FFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV---DLTKVGVPLPRPKNMASKVVFTTRSEEV-CG-FMEAHRK 307 (911)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~~~~~~~~~~~~~s~iivTtR~~~v-~~-~~~~~~~ 307 (911)
. ....+++-++++||++... ....+...+. ....+.++|+||....- .. ..+....
T Consensus 99 ~------------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le-~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 99 A------------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFME-AYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp B------------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHH-HHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred h------------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHH-hCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 0 0112467899999997543 2222222221 11235678888876541 11 1112247
Q ss_pred EEeccCCHHHHHHHHH-------HHhcCcccCCCccHHHHHHHHHHHcCCChhHH
Q 042327 308 FKMVCLSDNDSWDLFQ-------QKVGKEILNSHPDILELAQTVARECGGLPLAL 355 (911)
Q Consensus 308 ~~l~~L~~~e~~~Lf~-------~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai 355 (911)
+.+++++.++-.+++. +.+.......++ .+....+++.++|.+..+
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHH
Confidence 8999999888544332 222222111111 255677888888876543
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.89 E-value=0.00015 Score=78.30 Aligned_cols=180 Identities=17% Similarity=0.119 Sum_probs=100.1
Q ss_pred CcccchhhHHHHHHHHHcC------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIVE------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..++.+.+.+.. ...+.|.|+|++|+|||+||+.+++.. ...| +.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~---~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEeeHH------
Confidence 4589999999988877621 123468899999999999999999987 2222 223222
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc-------------cccccccCCC--CCCCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD-------------LTKVGVPLPR--PKNMA 286 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~--~~~~~ 286 (911)
++ .... ...........+...-..++.+|+||+++.... ...+...+.. ....+
T Consensus 119 ~l----~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 DL----VSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp HH----HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred HH----hhhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 11 1110 011122222222222245789999999964310 1111111100 11234
Q ss_pred cEEEEEcCchhHhh---hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCC-ChhHHHHHH
Q 042327 287 SKVVFTTRSEEVCG---FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGG-LPLALITIG 359 (911)
Q Consensus 287 s~iivTtR~~~v~~---~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g-~Plai~~~~ 359 (911)
..||.||....... .-.....+.+...+.++-.+++...+........ ......|++.+.| .+-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666776543210 1123456788888999999999887754431111 2345678888888 454555443
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.89 E-value=0.00021 Score=78.29 Aligned_cols=180 Identities=13% Similarity=0.079 Sum_probs=98.6
Q ss_pred CcccchhhHHHHHHHHHcC------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIVE------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
+.++|.+..++.+.+++.. ...+.|.|+|..|+|||++|+.+++.. ... .+.+.++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NAT---FFNISAASLTSK- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCE---EEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCc---EEEeeHHHhhcc-
Confidence 4589999999999887721 234688999999999999999998876 222 233333221110
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--------c-----cccccccC---CCCCCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--------D-----LTKVGVPL---PRPKNM 285 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~~---~~~~~~ 285 (911)
. ...........+...-...+.+|+||+++... . ...+...+ ......
T Consensus 188 -~---------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 188 -Y---------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred -c---------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 01111112222222223456899999996430 0 00111100 101123
Q ss_pred CcEEEEEcCchhHh-hh-c-cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChh-HHHHHH
Q 042327 286 ASKVVFTTRSEEVC-GF-M-EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPL-ALITIG 359 (911)
Q Consensus 286 ~s~iivTtR~~~v~-~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pl-ai~~~~ 359 (911)
...||.||...... .. . .....+.+...+.++..+++...+........ .+....+++.+.|..- +|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566666543321 11 1 22346788889999999999887754321111 2356788888888544 554443
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.88 E-value=1.5e-05 Score=77.36 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=41.3
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++||+.+++.+.+.+.......+.|+|.+|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987767778999999999999999998876
No 199
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.86 E-value=3.8e-05 Score=82.69 Aligned_cols=171 Identities=15% Similarity=0.067 Sum_probs=99.1
Q ss_pred CcccchhhHHHHHHHHHcC-----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE-----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIA 228 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 228 (911)
+.++|++..++++..++.. .....|.|+|++|+|||++|+.+++.. ...| +.+.++......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~------- 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSG------- 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHH-------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchh-------
Confidence 4589999999988887753 344678999999999999999998876 2232 233332221111
Q ss_pred HHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCC-----------------CCCCCcEE
Q 042327 229 KQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPR-----------------PKNMASKV 289 (911)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~-----------------~~~~~s~i 289 (911)
.....+.. ..+..+|+||++.... ....+...+.. ...++..+
T Consensus 96 ----------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 96 ----------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ----------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ----------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11111111 2345678888886431 01111000000 01113566
Q ss_pred EEEcCchhH-hhh-c-cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 290 VFTTRSEEV-CGF-M-EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 290 ivTtR~~~v-~~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
|.||..... ... . .....+.+.+++.++...++.+.+...... --.+....+++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHH
Confidence 666665332 111 1 123578999999999999998876432211 11355677888899998655443
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.82 E-value=1.1e-05 Score=78.17 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=38.3
Q ss_pred CCCCCccEEEccCC-CCCCcC----hhHHhcCCcccEEEccCCCCcc-----cCccccCCCCCCEEeecCCCCcc-----
Q 042327 532 PTCPHLLTLFLDNN-ESLKIP----NDFFQYMHSLKVLNLSRIKLKS-----FPLGISKLVSLQQLDLSYSSIKE----- 596 (911)
Q Consensus 532 ~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i~~----- 596 (911)
...++|++|++++| .+..-. ...+...++|++|+|++|.|.. +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 44556666666665 543211 1123334555666666555542 22333344455555555555542
Q ss_pred ccccccCCccccEEec
Q 042327 597 LPRELYALVNLKCLNL 612 (911)
Q Consensus 597 lp~~~~~l~~L~~L~l 612 (911)
+...+...++|++|+|
T Consensus 113 l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 113 LVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHGGGGCSSCCEEEC
T ss_pred HHHHHHhCCCceEEEe
Confidence 3333444444555554
No 201
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.80 E-value=8.2e-06 Score=79.18 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=80.3
Q ss_pred cccceEeecccc-cccc-----c-CCCCCCCCccEEEccCCCCCCcC----hhHHhcCCcccEEEccCCCCcc-----cC
Q 042327 512 WENVRRLSLMQN-EITN-----L-KEIPTCPHLLTLFLDNNESLKIP----NDFFQYMHSLKVLNLSRIKLKS-----FP 575 (911)
Q Consensus 512 ~~~l~~L~l~~~-~~~~-----~-~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~i~~-----lp 575 (911)
.+.+++|+|++| .+.. + ..+...++|++|+|++|.+..-. ...+...+.|++|+|++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 468999999998 7754 1 23567899999999999876432 2235567899999999999884 56
Q ss_pred ccccCCCCCCEEee--cCCCCcc-----ccccccCCccccEEecccc
Q 042327 576 LGISKLVSLQQLDL--SYSSIKE-----LPRELYALVNLKCLNLEHA 615 (911)
Q Consensus 576 ~~i~~l~~L~~L~L--~~~~i~~-----lp~~~~~l~~L~~L~l~~~ 615 (911)
..+...++|++|+| ++|.|.. +...+...++|++|++++|
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 67888899999999 8898873 4455566678888888877
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.79 E-value=0.00047 Score=76.73 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=100.5
Q ss_pred CcccchhhHHHHHHHHHc------------CCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIV------------EDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..++.+.+.+. ....+.|.++|++|+|||+||+.+++.. . .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~-----~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS-----TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS-----EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC-----CEEEEeHHH---
Confidence 458999999988887762 1234688999999999999999999985 1 11 223333221
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc-------------cccccccCCC--CCCCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD-------------LTKVGVPLPR--PKNMA 286 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~--~~~~~ 286 (911)
+.... .+. .......+... .-..++.+|+||+++.... ...+...+.. ....+
T Consensus 204 -l~~~~---~g~-----~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LVSKW---LGE-----SEKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HHhhh---cch-----HHHHHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11100 110 11122222222 2235678999999964310 0111111210 12345
Q ss_pred cEEEEEcCchhHhh--hc-cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC-hhHHHHHH
Q 042327 287 SKVVFTTRSEEVCG--FM-EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL-PLALITIG 359 (911)
Q Consensus 287 s~iivTtR~~~v~~--~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~-Plai~~~~ 359 (911)
..||.||....... .. .....+.+...+.++-..++...+........ ......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66777776543211 01 23356778888888888999887754321111 23456788889884 54555443
No 203
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.77 E-value=0.001 Score=72.60 Aligned_cols=124 Identities=11% Similarity=0.199 Sum_probs=73.9
Q ss_pred cccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCCEE
Q 042327 510 REWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQQL 587 (911)
Q Consensus 510 ~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 587 (911)
....+++.+.+.. .++.++ .|.+|.+|+.+.+..+ ++.++...|.++ .|..+.+.. +++.++...-...+|+.+
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEE
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccc
Confidence 3345666666653 344443 3777888888888654 667777777766 466666543 355554433333477888
Q ss_pred eecCCCCccccccccCCccccEEeccccccccccChhhhcCCccccEEEcccc
Q 042327 588 DLSYSSIKELPRELYALVNLKCLNLEHAEELITIPQQVISNFSRLHVLRMYGT 640 (911)
Q Consensus 588 ~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 640 (911)
.+..+ ++.+......-.+|..+.+..+ +..+....+..+.+|+...+..+
T Consensus 119 ~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp ECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred cCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 77654 4445444443345666665543 45555555677777777766543
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.76 E-value=0.00016 Score=76.16 Aligned_cols=174 Identities=13% Similarity=0.164 Sum_probs=97.8
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
++++|.+..++++.+++.. ...+.|.|+|++|+||||+|+.+++.. ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 4589999888888776642 345679999999999999999999986 222 22222 1
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc------------c----cccccccCCC-CC
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV------------D----LTKVGVPLPR-PK 283 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~~~~-~~ 283 (911)
.++.... .+.. .......+.......+.+|+||+++... . ...+...+.. ..
T Consensus 83 ~~l~~~~---~g~~--------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGES--------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTTC--------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCch--------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2222221 1111 1112222222334567999999996310 0 1111111110 12
Q ss_pred CCCcEEEEEcCchhHh-h-hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhH
Q 042327 284 NMASKVVFTTRSEEVC-G-FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLA 354 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~-~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Pla 354 (911)
..+..||.||...... . .+ .....+.+...+.++-.+++...+.......+..+. .+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCHH
Confidence 3356777777665422 1 11 223578899999999899988877543322222333 455567776543
No 205
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=3.6e-05 Score=78.52 Aligned_cols=78 Identities=31% Similarity=0.328 Sum_probs=51.0
Q ss_pred CCCccEEEccCCCCCCcCh--hHHhcCCcccEEEccCCCCcccCccccCCC--CCCEEeecCCCCcc-cc-------ccc
Q 042327 534 CPHLLTLFLDNNESLKIPN--DFFQYMHSLKVLNLSRIKLKSFPLGISKLV--SLQQLDLSYSSIKE-LP-------REL 601 (911)
Q Consensus 534 ~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~i~~-lp-------~~~ 601 (911)
+++|++|+|++|.+..++. ..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|.+.. +| ..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 4556666666666555432 34667888888888888777652 344444 78888888887763 43 235
Q ss_pred cCCccccEEec
Q 042327 602 YALVNLKCLNL 612 (911)
Q Consensus 602 ~~l~~L~~L~l 612 (911)
..+++|+.||=
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 66888888863
No 206
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00035 Score=74.94 Aligned_cols=171 Identities=17% Similarity=0.206 Sum_probs=99.0
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ...| +.|..+.-.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~sk 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQK 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSCS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhcc
Confidence 4578999888888665531 235678899999999999999999997 2333 34443322110
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH-ccCCcEEEEEccccccc----------c------cccccccCCC-C
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS-LSEKKFVLLLDDVWERV----------D------LTKVGVPLPR-P 282 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~----------~------~~~~~~~~~~-~ 282 (911)
+... .+...+.+... -+..+++|++|+++... + ...+...+.. .
T Consensus 222 -----------------~vGe-se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 222 -----------------YIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp -----------------STTH-HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred -----------------ccch-HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0111 12223333322 24578999999996421 0 0011111110 1
Q ss_pred CCCCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh
Q 042327 283 KNMASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 283 ~~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
...+-.||.||...+... .+ .....+.++.-+.++-.++|+.+........+.++ ..+++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 234556777776654321 11 34567888888888889999877755432233334 45667777753
No 207
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.67 E-value=0.00027 Score=79.21 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=82.0
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCC--CCC-c-eEEEEEeCCccCHHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGP--NTF-D-CVIWVVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F-~-~~~wv~vs~~~~~~~~~~~i~~ 229 (911)
+.++||+.+++.++..+......-+.++|.+|+|||++|+.++....... ... + .++.+.++. .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------------~ 247 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------K 247 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc------------c
Confidence 34899999999999999776566778999999999999999998852110 001 1 122222220 0
Q ss_pred HcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHh-------hhc
Q 042327 230 QMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVC-------GFM 302 (911)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~-------~~~ 302 (911)
..+ . .......+... .-..++.+|++|. .......+...+. ....++|.||...... ...
T Consensus 248 ~~g----~-~e~~~~~~~~~---~~~~~~~iLfiD~--~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 248 YRG----E-FEDRLKKVMDE---IRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ----------CTTHHHHHHH---HHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ccc----h-HHHHHHHHHHH---HHhcCCeEEEEeC--chhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 000 0 01112222222 2235678899991 1111122222222 2245666666544311 111
Q ss_pred cccceEEeccCCHHHHHHHHHHHhc
Q 042327 303 EAHRKFKMVCLSDNDSWDLFQQKVG 327 (911)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (911)
.....+.+++.+.++..+++.....
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHH
Confidence 1224689999999999999987654
No 208
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=0.00027 Score=74.00 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=88.8
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCC
Q 042327 158 GLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGP-NTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFD 235 (911)
Q Consensus 158 Gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 235 (911)
|-+..++.+.+.+..++.+.+.++|+.|+||||+|+.+.+...... .+.+ ..++..+. ...++.+ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 3455677788888777778999999999999999999987531111 2333 34454432 2233222 22333332111
Q ss_pred CcccccCHHHHHHHHHHHccCCcEEEEEcccccc--cccccccccCCCCCCCCcEEEEEcCch-hHhhhccccceEEecc
Q 042327 236 DSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSE-EVCGFMEAHRKFKMVC 312 (911)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~-~v~~~~~~~~~~~l~~ 312 (911)
..+++-++|+|+++.. .....+...+. .....+.+|++|.+. .+....... .+++++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LE-ep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALE-EPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH-SCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHh-CCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 1245678999999643 22333433333 223466777766544 343333444 899999
Q ss_pred CCHHHHHHHHHHHh
Q 042327 313 LSDNDSWDLFQQKV 326 (911)
Q Consensus 313 L~~~e~~~Lf~~~~ 326 (911)
+++++..+.+.+..
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 209
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00047 Score=75.30 Aligned_cols=171 Identities=15% Similarity=0.246 Sum_probs=98.2
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++.|.+..+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 4578999888887665531 245789999999999999999999997 222 23444333211
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHH-HccCCcEEEEEccccccc--------c--------cccccccCCC-C
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN-SLSEKKFVLLLDDVWERV--------D--------LTKVGVPLPR-P 282 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--------~--------~~~~~~~~~~-~ 282 (911)
.+... .+.....+.. .-...+++|++|+++... . +..+...+.. .
T Consensus 254 ----------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 ----------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ----------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ----------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 00111 1222233332 234578999999996321 0 0011111110 2
Q ss_pred CCCCcEEEEEcCchhHhh--hcc---ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh
Q 042327 283 KNMASKVVFTTRSEEVCG--FME---AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 283 ~~~~s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
...+..||.||...+... .+. -...+.++.-+.++-.++|..+........+.++ ..+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 234567888887665421 112 3456788888888888888877654332223334 45667777643
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.55 E-value=0.00041 Score=77.70 Aligned_cols=178 Identities=15% Similarity=0.173 Sum_probs=100.0
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
..++|.+..++++.+.+.. ...+-|.|+|.+|+|||++|+.+++.. ...| +.+.++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~f---v~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEE---EEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCE---EEEEchH----
Confidence 3589999999888776641 344578999999999999999998875 2222 3333211
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc-------------cccccccCCC-CCCCC
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD-------------LTKVGVPLPR-PKNMA 286 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~-~~~~~ 286 (911)
+...+ ...........+.....+++.+|+||+++.... ...+...+.. ....+
T Consensus 274 ------l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 ------IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp ------HHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred ------hhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 11111 011112223333344456788999999942110 0111111110 12234
Q ss_pred cEEEEEcCchhH-hhhc----cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC-hhHHHHH
Q 042327 287 SKVVFTTRSEEV-CGFM----EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL-PLALITI 358 (911)
Q Consensus 287 s~iivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~-Plai~~~ 358 (911)
..||.||..... -..+ .....+.+...+.++-.+++...+.......+..+ .++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 566667765532 1111 23346889999999999999988754432233333 3456667664 4444443
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.001 Score=72.33 Aligned_cols=170 Identities=19% Similarity=0.265 Sum_probs=97.6
Q ss_pred CcccchhhHHHHHHHHHc----C---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIV----E---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++.|.+..+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ...| +.|..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~f---i~vs~s~L~s- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATF---IRVIGSELVQ- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCC-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCe---EEEEhHHhhc-
Confidence 357898988888876542 1 346788999999999999999999987 2222 3343332111
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHH-HccCCcEEEEEcccccccc----------------cccccccCCC-C
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN-SLSEKKFVLLLDDVWERVD----------------LTKVGVPLPR-P 282 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~~-~ 282 (911)
.+... .+...+.+.. .-...+++|++|+++.... ...+...+.. .
T Consensus 282 ----------------k~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 282 ----------------KYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp ----------------CSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred ----------------ccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 00111 1222333332 2345789999999963210 0001111110 1
Q ss_pred CCCCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 283 KNMASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 283 ~~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
...+..||.||...+... .+ .....+.+..-+.++-.++|+.+........+-++ ..|++.|.|.
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 233456677776554321 11 23567888888888888999877754432223333 4566778775
No 212
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.48 E-value=0.0002 Score=86.86 Aligned_cols=154 Identities=13% Similarity=0.219 Sum_probs=84.3
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhccc--CCCCC--ceEEEEEeCCccCHHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLE--GPNTF--DCVIWVVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~F--~~~~wv~vs~~~~~~~~~~~i~~ 229 (911)
+.++||+.+++++++.+.......+.++|.+|+||||+|+.+++.... +.... ..++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 348999999999999998766666889999999999999999887521 11111 1234443322100
Q ss_pred HcCCCCCcccccCHHHHHHHHHHHcc--CCcEEEEEccccccc---c----cc---cccccCCCCCCCCcEEEEEcCchh
Q 042327 230 QMGFFDDSWRAKSVEEKALEIFNSLS--EKKFVLLLDDVWERV---D----LT---KVGVPLPRPKNMASKVVFTTRSEE 297 (911)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~----~~---~~~~~~~~~~~~~s~iivTtR~~~ 297 (911)
+.. ...........+.+.+. +++.+|++|++.... . ++ .+...+. ..+..+|.||....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCchH
Confidence 000 01122333333333332 368999999996432 0 11 1111111 12344565555433
Q ss_pred H------hhhccccceEEeccCCHHHHHHHHHHHh
Q 042327 298 V------CGFMEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 298 v------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
. .........+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 2 1111222458999999999999997543
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.47 E-value=0.00094 Score=80.19 Aligned_cols=155 Identities=15% Similarity=0.247 Sum_probs=90.4
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCC---CCceEEEE-EeCCccCHHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPN---TFDCVIWV-VVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~F~~~~wv-~vs~~~~~~~~~~~i~~ 229 (911)
+.++||+.+++++++.+......-+.|+|.+|+||||+|+.+++......- ...+.++. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 348999999999999998766677889999999999999999887521110 12333322 11110
Q ss_pred HcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccccc--------c--cccccccCCCCCCCCcEEEEEcCchhH
Q 042327 230 QMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERV--------D--LTKVGVPLPRPKNMASKVVFTTRSEEV 298 (911)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~--~~~~~~~~~~~~~~~s~iivTtR~~~v 298 (911)
.... . .....+.....+.+.+ ..++.+|++||+.... . ...+..++. ...+..+|.+|.....
T Consensus 254 -~~~~--~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l--~~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 -LAGT--K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEF 327 (758)
T ss_dssp --CCC--C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS--SSCCCEEEEEECHHHH
T ss_pred -hccc--c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH--hCCCeEEEEEeCchHH
Confidence 0000 0 1123333334444444 3467899999996431 1 111122222 2234567777765442
Q ss_pred hhh-------ccccceEEeccCCHHHHHHHHHHHh
Q 042327 299 CGF-------MEAHRKFKMVCLSDNDSWDLFQQKV 326 (911)
Q Consensus 299 ~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 326 (911)
... ......+.+...+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111 1112368899999999998887654
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00067 Score=73.92 Aligned_cols=170 Identities=20% Similarity=0.298 Sum_probs=91.7
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.|..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEE---EEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe---EEEecchhhc-
Confidence 4578999988888775531 245679999999999999999999987 2222 3444333211
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHH-HccCCcEEEEEcccccc--------cc--------cccccccCCC-C
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN-SLSEKKFVLLLDDVWER--------VD--------LTKVGVPLPR-P 282 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--------~~--------~~~~~~~~~~-~ 282 (911)
.+... .+...+.+.. .-...++++++|+++.. .. ...+...+.. .
T Consensus 245 ----------------~~~Ge-~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 245 ----------------KYLGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp ----------------SSCSH-HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred ----------------cccch-hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 00111 1222222322 22457899999998521 00 0111111100 1
Q ss_pred CCCCcEEEEEcCchhHh--hhc---cccceEEeccCCH-HHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 283 KNMASKVVFTTRSEEVC--GFM---EAHRKFKMVCLSD-NDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 283 ~~~~s~iivTtR~~~v~--~~~---~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
...+-.||.||...+.. ..+ .....+.+..++. ++-..+|...........+.++ ..+++.+.|.
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 23455677777655431 111 2234677766654 4445566665543322223334 4566777764
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00078 Score=72.49 Aligned_cols=170 Identities=19% Similarity=0.242 Sum_probs=96.3
Q ss_pred CcccchhhHHHHHHHHHc----C---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIV----E---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++.|.+..+++|.+.+. . ...+-|.++|++|+|||.||+++++.. ...| +.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~s- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELIQ- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGCC-
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhhh-
Confidence 457889988888866553 1 235789999999999999999999997 2222 3333322110
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH-ccCCcEEEEEcccccccc----------------cccccccCCC-C
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS-LSEKKFVLLLDDVWERVD----------------LTKVGVPLPR-P 282 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~~-~ 282 (911)
.+.. ..+...+.+... -+..+++|++|+++.... ...+...+.. .
T Consensus 255 ----------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 255 ----------------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp ----------------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred ----------------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0011 122233333332 245689999999863210 0011111100 2
Q ss_pred CCCCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 283 KNMASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 283 ~~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
...+..||.||...+... .+ .....+.+..-+.++-.++|..+........+.++ ..+++.+.|.
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 234556777776655422 11 22346778877888888888877754432333344 3566777764
No 216
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00042 Score=75.55 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=95.8
Q ss_pred CcccchhhHHHHHHHHHc----C---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIV----E---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++.|.+..+++|.+.+. . ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh-
Confidence 457899998888876542 1 245789999999999999999999997 222 23343332111
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH-ccCCcEEEEEcccccc-------cc---------cccccccCCC-C
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS-LSEKKFVLLLDDVWER-------VD---------LTKVGVPLPR-P 282 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~-------~~---------~~~~~~~~~~-~ 282 (911)
.+.. ..+...+.+... -...+++|++|+++.. .. ...+...+.. .
T Consensus 254 ----------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 ----------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ----------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ----------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0011 112223333322 2346899999998521 00 0111111110 1
Q ss_pred CCCCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 283 KNMASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 283 ~~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
...+-.||.||...+... .+ .-...+.++.-+.++-.++|+.+........+-++ ..+++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 233456677887655321 11 23457788888888888888766543222222333 4566777774
No 217
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.47 E-value=3.6e-05 Score=74.31 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHcC---CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 042327 159 LESTLQKVWRCIVE---DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFD 235 (911)
Q Consensus 159 r~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 235 (911)
....++.+.+++.+ .....+.|+|+.|+||||||+.+++......+ + .+++++ ..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~-~~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-I-RGYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-C-CCCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-eEEEEE------HHHHHHHHHHHhcCch
Confidence 34445555555543 24578999999999999999999988621111 1 123333 3444444443332111
Q ss_pred CcccccCHHHHHHHHHHHccCCcEEEEEccccc--ccccc--cccccCCCCCCCCcEEEEEcCc
Q 042327 236 DSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWE--RVDLT--KVGVPLPRPKNMASKVVFTTRS 295 (911)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~~~~~~~~~~~~~s~iivTtR~ 295 (911)
. . ..... +. +.-+|||||++. ...|. .+...+......|..+|+||..
T Consensus 91 ----~-~--~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 ----D-T--KFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----C-S--HHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----H-H--HHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 1 12222 22 456899999973 22332 1111111011246788888874
No 218
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.45 E-value=0.0001 Score=68.11 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=35.2
Q ss_pred cccchhhHHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|+...++++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999888887742 233457799999999999999999875
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.42 E-value=0.00089 Score=80.23 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=82.9
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC--ceEEEEEeCCccCHHHHHHHHHHHc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF--DCVIWVVVSKDLRVEYIQEVIAKQM 231 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l 231 (911)
+.++||+.+++++...+......-+.++|.+|+|||++|+.+++........+ ...-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 34899999999999999776666688999999999999999988852111111 1111111111
Q ss_pred CCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccccccccccCCCCCCCCcEEEEEcCchhHh-------hhccc
Q 042327 232 GFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVDLTKVGVPLPRPKNMASKVVFTTRSEEVC-------GFMEA 304 (911)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~s~iivTtR~~~v~-------~~~~~ 304 (911)
+.............. +...-..++.+|++|. ..+......+.. .....++|.||...... .....
T Consensus 245 g~~~~G~~e~~l~~~---~~~~~~~~~~iLfiD~---~~~~~~~L~~~l--~~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKV---MDEIRQAGNIILFIDA---AIDASNILKPSL--ARGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp --------CTTHHHH---HHHHHTCCCCEEEECC-----------CCCT--TSSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred cccccchHHHHHHHH---HHHHHhcCCEEEEEcC---chhHHHHHHHHH--hcCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 000000001122222 2223336778999992 222222222221 23345677666654410 11112
Q ss_pred cceEEeccCCHHHHHHHHHHHhc
Q 042327 305 HRKFKMVCLSDNDSWDLFQQKVG 327 (911)
Q Consensus 305 ~~~~~l~~L~~~e~~~Lf~~~~~ 327 (911)
...+.++..+.++..+++.....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 25689999999999999987654
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.38 E-value=0.002 Score=65.94 Aligned_cols=176 Identities=16% Similarity=0.122 Sum_probs=92.6
Q ss_pred CcccchhhHHHHHHHHH---cC---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCI---VE---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..++++.+.+ .. ...+-|.|+|+.|+||||+|+.+++.. ...| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 45899988877765443 22 123458899999999999999999886 2222 3333222110
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc----------------cccccccCCC-CCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD----------------LTKVGVPLPR-PKN 284 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~~-~~~ 284 (911)
. ............+.......+.++++|+++.... ...+...+.. ...
T Consensus 84 --------~-------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------M-------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------S-------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------H-------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 0111222222333333345678999999942110 0011100100 112
Q ss_pred CCcEEEEEcCchhHh-hh-c---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCC-ChhHHH
Q 042327 285 MASKVVFTTRSEEVC-GF-M---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGG-LPLALI 356 (911)
Q Consensus 285 ~~s~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g-~Plai~ 356 (911)
.+..||.||...... .. . .....+.+...+.++-.+++.............. ...++..+.| .+--+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 345677777655421 11 1 1234677777788888888877664332222222 2346667777 554444
No 221
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.36 E-value=0.0051 Score=67.04 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=64.9
Q ss_pred CccccccceEeecccccccccC--CCCCCCCccEEEccCCCCCCcChhHHhcCCcccEEEccCCCCcccCccccCCCCCC
Q 042327 508 DVREWENVRRLSLMQNEITNLK--EIPTCPHLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIKLKSFPLGISKLVSLQ 585 (911)
Q Consensus 508 ~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 585 (911)
.+.++.+|+.+.+..+ +..+. .|.+| +|..+.+..+ +..++...|... +|+.+.+..+ ++.+....-...+|.
T Consensus 64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~~l~ 138 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNSSVK 138 (379)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCC
T ss_pred HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-cccccccccccceee
Confidence 4778899999999754 55553 36677 6777777654 777888878764 7999998765 344433322233566
Q ss_pred EEeecCCCCccccc-cccCCccccEEecccc
Q 042327 586 QLDLSYSSIKELPR-ELYALVNLKCLNLEHA 615 (911)
Q Consensus 586 ~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~ 615 (911)
.+.+..+ ++.+.. .+..+.+|+.+.+..+
T Consensus 139 ~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 139 RIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp EEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred eeeccce-eeccccchhcccccccccccccc
Confidence 6666543 444432 3445677777766554
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.30 E-value=0.0013 Score=69.46 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=37.7
Q ss_pred CcccchhhHHHHHHHHHcC--------------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE--------------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|.+..++.+...+.. .....+.++|.+|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999998888776643 234568899999999999999999886
No 223
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.28 E-value=0.0026 Score=67.90 Aligned_cols=171 Identities=17% Similarity=0.146 Sum_probs=90.4
Q ss_pred CcccchhhHHHHHHHHHcC-----CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHH
Q 042327 154 PTVVGLESTLQKVWRCIVE-----DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIA 228 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 228 (911)
+.++|.+..++.+-..+.. .....+.++|+.|+||||||+.+++.. ...|. ....+-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCH--------
Confidence 3478888777777655542 234679999999999999999999986 22221 1111100011
Q ss_pred HHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--ccccccccCCCC-------CC----------CCcEE
Q 042327 229 KQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--DLTKVGVPLPRP-------KN----------MASKV 289 (911)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~~~~~-------~~----------~~s~i 289 (911)
.+.. .+...+. ++-++++|++.... ..+.+...+... .+ ....+
T Consensus 91 ---------------~~l~-~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 91 ---------------GDMA-AILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ---------------HHHH-HHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ---------------HHHH-HHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1111 1111222 33466778774321 111110000000 00 01222
Q ss_pred E-EEcCchhHhhhcc--ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHHH
Q 042327 290 V-FTTRSEEVCGFME--AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALITI 358 (911)
Q Consensus 290 i-vTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~~ 358 (911)
+ .|++...+...+. ....+.+++.+.++-.+++.+.+...... .-.+.+..|++.++|.|-.+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~---~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE---IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHhcCCChHHHHHH
Confidence 2 3444333221111 12357899999999999999876422211 12356788999999999765444
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.27 E-value=4.3e-05 Score=70.91 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=35.7
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK 216 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~ 216 (911)
.++|.... .+..+..-....++|+|..|+|||||++.++.... .. .+ .++++....
T Consensus 19 f~~g~n~~---~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 19 FLGTENAE---LVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQAL-EA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSCCTHH---HHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHH-TT-TC-CEEEEETTT
T ss_pred cCcCccHH---HHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHH-hc-CC-cEEEEcHHH
Confidence 34454433 23333332556899999999999999999999872 21 11 256665443
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.26 E-value=0.00038 Score=68.47 Aligned_cols=113 Identities=23% Similarity=0.140 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCC----CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc
Q 042327 162 TLQKVWRCIVED----PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS 237 (911)
Q Consensus 162 ~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 237 (911)
.++.+.+++... ....+.|+|.+|+||||||+.+++... .....+++++++ ++...+......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~---- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHHHHHHHhcc----
Confidence 444555555432 126899999999999999999999872 223345666543 344444433211
Q ss_pred ccccCHHHHHHHHHHHccCCcEEEEEccccc--cccccc--ccc-cCCCCCCCCcEEEEEcCc
Q 042327 238 WRAKSVEEKALEIFNSLSEKKFVLLLDDVWE--RVDLTK--VGV-PLPRPKNMASKVVFTTRS 295 (911)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~--~~~-~~~~~~~~~s~iivTtR~ 295 (911)
.........+. .. -+|||||++. ..+|.. +.. .+......+.++|+||..
T Consensus 104 ---~~~~~~~~~~~----~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIK----KV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHH----HS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhc----CC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11122222222 22 3899999954 233332 211 111011235568888874
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.24 E-value=0.00021 Score=73.95 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=35.4
Q ss_pred CcccchhhHHHHHHHHHc---C---------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIV---E---------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 458999888777766553 1 122347799999999999999999986
No 227
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.21 E-value=0.002 Score=71.47 Aligned_cols=172 Identities=12% Similarity=0.134 Sum_probs=94.8
Q ss_pred CcccchhhHHHHHHHHH---cCC---------CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCI---VED---------PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..++++.+.+ ... -.+-|.|+|++|+||||||+.+++.. ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 45899988777765543 221 12458899999999999999999986 2233 33333322110
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc----------------cccccccCCC-CCC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD----------------LTKVGVPLPR-PKN 284 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~~~~-~~~ 284 (911)
. ...........+.......+.+|+||+++.... ...+...+.. ...
T Consensus 89 ---------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ---------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ---------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ---------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 011112222233334456789999999954210 1111111100 112
Q ss_pred CCcEEEEEcCchhHhh--hcc---ccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh
Q 042327 285 MASKVVFTTRSEEVCG--FME---AHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
.+..||.||...+... ... ....+.+...+.++-.+++...+.......+..+ ..+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhH----HHHHHhcCCCc
Confidence 3556777777665422 111 2347788888888888888776654322222222 34677777766
No 228
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.09 E-value=0.00015 Score=66.81 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=33.5
Q ss_pred cccchhhHHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|++..++++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 478998888888777643 233457799999999999999988865
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.00 E-value=0.0028 Score=74.51 Aligned_cols=171 Identities=14% Similarity=0.168 Sum_probs=96.4
Q ss_pred cccchhhHHHHHHHHHc----C---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 155 TVVGLESTLQKVWRCIV----E---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++.|.+..+++|.+.+. . ...+-|.++|++|+|||+||++++++. ..+ .+.|..+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 46788888877766542 1 235689999999999999999999987 222 23443221
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEccccccc--------cc-----ccccccCCC-CCCCCc
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERV--------DL-----TKVGVPLPR-PKNMAS 287 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~-----~~~~~~~~~-~~~~~s 287 (911)
+... +.......+...+....+..+.+|+||+++... +. .++...+.. ....+-
T Consensus 274 -----l~sk-------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -----IMSK-------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----HHSS-------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -----hhcc-------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 1110 011122223333334445678999999996421 00 011111100 112234
Q ss_pred EEEEEcCchhHh-hhc----cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh
Q 042327 288 KVVFTTRSEEVC-GFM----EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 288 ~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
.||.||...+.. ..+ .....+.+..-+.++-.++|...........+.++ ..+++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 566666655431 111 23457888888888888888877654432333333 45677787764
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.97 E-value=0.0016 Score=68.83 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=43.3
Q ss_pred cccchhhHHHHHHHHHcCC---------CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc
Q 042327 155 TVVGLESTLQKVWRCIVED---------PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD 217 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~ 217 (911)
.++|.+..++.+...+... ....+.++|..|+||||+|+.+++... ..-...+.+.++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEY 86 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGGC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeecccc
Confidence 4789999888887776532 236899999999999999999998862 11123455555543
No 231
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.97 E-value=0.0027 Score=71.02 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHHH---HHcCC--CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWR---CIVED--PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~---~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|.+..++.+.. .+..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 468999988776544 44333 23578899999999999999999886
No 232
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.76 E-value=0.011 Score=67.44 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=35.1
Q ss_pred cccchhhHHHHHHHHHc------CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIV------EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+++|.+..++.+.+.+. .....++.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47888877776654432 1245689999999999999999999886
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.58 E-value=0.0037 Score=74.84 Aligned_cols=153 Identities=12% Similarity=0.121 Sum_probs=84.2
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+.++|.+..++++.+++.. .....|.|+|.+|+||||||+.++... ...| +.+..+.-
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~l--- 274 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPEI--- 274 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHHH---
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchHh---
Confidence 3478998888888776642 234679999999999999999998876 2222 33332111
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHccCCcEEEEEcccccccc-------------cccccccCCC-CCCCC
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLSEKKFVLLLDDVWERVD-------------LTKVGVPLPR-PKNMA 286 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~-~~~~~ 286 (911)
. +.. ...........+.......+.++++|++..... ...+...+.. ....+
T Consensus 275 -------~---~~~----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 275 -------M---SKL----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -------S---SSS----TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred -------h---hhh----hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 0 000 011111222223333345678999999943210 0111111100 11234
Q ss_pred cEEEEEcCchhHh-hhc----cccceEEeccCCHHHHHHHHHHHhcCc
Q 042327 287 SKVVFTTRSEEVC-GFM----EAHRKFKMVCLSDNDSWDLFQQKVGKE 329 (911)
Q Consensus 287 s~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 329 (911)
..+|.||...... ..+ .....+.+...+.++-.+++...+...
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 5666666654321 111 123457788888899889888766443
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.55 E-value=0.031 Score=57.38 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=81.3
Q ss_pred CcccchhhHHHHHHHHHc----C---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIV----E---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
+++.|.++.++++.+.+. . .-.+-+.++|+.|+||||||+.++... . . ..+.+..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh
Confidence 457888888777766442 1 112339999999999999999999986 2 1 2344443221110
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEcccccccc---------ccc----ccccCCC-CCCC
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERVD---------LTK----VGVPLPR-PKNM 285 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------~~~----~~~~~~~-~~~~ 285 (911)
...........+.+.. ...+.++++|+++.... ... +...+.. ....
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000111222333322 34678999999954210 000 0001110 1122
Q ss_pred CcEEEEEcCchhHhhh--c---cccceEEeccCCHHHHHHHHHHHhc
Q 042327 286 ASKVVFTTRSEEVCGF--M---EAHRKFKMVCLSDNDSWDLFQQKVG 327 (911)
Q Consensus 286 ~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 327 (911)
..-++.+|...++... . .-...+.+...+.++-.+++.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3455666766655321 1 2355778888888888889887663
No 235
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.53 E-value=0.0012 Score=79.17 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=43.0
Q ss_pred CcccchhhHHHHHHHHHcC---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC
Q 042327 154 PTVVGLESTLQKVWRCIVE---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK 216 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~ 216 (911)
..++|.+..++.+.+.+.. .....+.++|+.|+|||++|+.+++... ..-...+.+.++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 4589999988888777752 1223799999999999999999998862 1122345555554
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.51 E-value=0.01 Score=61.33 Aligned_cols=171 Identities=13% Similarity=0.136 Sum_probs=86.5
Q ss_pred CcccchhhHHHHHHHHHc---C---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCIV---E---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..++++.+... . .-.+-+.|+|+.|+||||||+.++... .. ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecHH------
Confidence 457898877666544332 1 111238999999999999999999886 22 22333321
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccccc------------cc----ccccccCCCCC-
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERV------------DL----TKVGVPLPRPK- 283 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~~----~~~~~~~~~~~- 283 (911)
. +.... . . ........+.+.. ...+.++|+||++... .+ ..+...+....
T Consensus 108 ~----~~~~~-~------~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 D----FVEMF-V------G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp H----HHHST-T------T-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred H----HHHHH-h------h-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 1 11100 0 0 0111222223322 2456899999994210 01 11111111011
Q ss_pred CCCcEEEEEcCchhHhh-----hccccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh
Q 042327 284 NMASKVVFTTRSEEVCG-----FMEAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
....-++.||....+.. .......+.+...+.++-.+++...+.......+..+ ..+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL----ALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCH----HHHHHHcCCCC
Confidence 12234445565554321 1123457888888888888888776643221222222 34566666644
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.47 E-value=0.011 Score=60.08 Aligned_cols=170 Identities=15% Similarity=0.176 Sum_probs=86.0
Q ss_pred CcccchhhHHHHHHHHH---cC---------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCI---VE---------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..+.++.+.. .. .-.+-+.|+|+.|+||||||+.++... .. ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeHH------
Confidence 45788877665554332 21 112238999999999999999999886 22 22333221
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccccc------------c----cccccccCCC-CC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWERV------------D----LTKVGVPLPR-PK 283 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~~~~-~~ 283 (911)
. +.... . . ........+.+.. ...+.++++||++... . ...+...+.. ..
T Consensus 84 ~----~~~~~-~------~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 D----FVEMF-V------G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp H----HHHSC-T------T-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred H----HHHHH-h------h-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1 11110 0 0 0112222333333 3456899999994210 0 0111111110 11
Q ss_pred CCCcEEEEEcCchhHhhh--c---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCC
Q 042327 284 NMASKVVFTTRSEEVCGF--M---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGL 351 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~ 351 (911)
....-++.||....+... . .....+.++..+.++-.+++...+.......+..+ ..+++.+.|.
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~G~ 220 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL----ALLAKRTPGF 220 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCH----HHHHHHcCCC
Confidence 122345556665554221 1 23456788888888888888776543221222222 3466666664
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.38 E-value=0.018 Score=64.31 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=88.8
Q ss_pred CcccchhhHHHHHHHHH---cCC---------CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHH
Q 042327 154 PTVVGLESTLQKVWRCI---VED---------PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVE 221 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~ 221 (911)
++++|.+..+.++.+.. ... -.+-|.|+|+.|+||||||+.++... ... .+.+..+.-...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~---~i~i~g~~~~~~- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASGSDFVEM- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCC---EEEEEGGGGTSS-
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEehhHHHHh-
Confidence 45899988776665443 221 12348999999999999999999886 222 234443321100
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHHHcc-CCcEEEEEcccccccc----------------cccccccCCC-CC
Q 042327 222 YIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSLS-EKKFVLLLDDVWERVD----------------LTKVGVPLPR-PK 283 (911)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~----------------~~~~~~~~~~-~~ 283 (911)
. . .........+.+... ..+.++++|+++.... ...+...+.. ..
T Consensus 104 ------------~----~-g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 104 ------------F----V-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp ------------C----T-THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred ------------h----h-hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 0 001111222222222 2457999999953210 0111111110 11
Q ss_pred CCCcEEEEEcCchhHhh--hc---cccceEEeccCCHHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCCh
Q 042327 284 NMASKVVFTTRSEEVCG--FM---EAHRKFKMVCLSDNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLP 352 (911)
Q Consensus 284 ~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~P 352 (911)
..+..|+.||...++.. .. .....+.+...+.++-.+++..++.......+.. ...+++.+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 23345666666665422 11 2345778888888888888876654322111111 234566666654
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.32 E-value=0.0019 Score=66.72 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=45.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEe--CCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVV--SKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
.+++.|+|++|+||||||.+++... . ..++|++. .+.. .. ...+.++....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~v-------------~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEPL-------------SG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCSS-------------TT-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhhh-------------hh-----hhcCHHHHHHHHHH
Confidence 4678899999999999999988752 1 12345555 2221 10 01345666666666
Q ss_pred HccCCcEEEEEccccc
Q 042327 253 SLSEKKFVLLLDDVWE 268 (911)
Q Consensus 253 ~l~~k~~LlVlDdv~~ 268 (911)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 676666 999999943
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.28 E-value=0.0098 Score=58.95 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=53.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc----------ccccCH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS----------WRAKSV 243 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~~~~ 243 (911)
.-.++.|+|.+|+||||||..++. . . -..++|++.....+...+.. +.+..+...+. ......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 456999999999999999999887 3 1 14678888776555555443 33333321100 011112
Q ss_pred HHHHHHHHHHccCCcEEEEEcccc
Q 042327 244 EEKALEIFNSLSEKKFVLLLDDVW 267 (911)
Q Consensus 244 ~~~~~~l~~~l~~k~~LlVlDdv~ 267 (911)
.+....++..+..+.-+||+|.+-
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcH
Confidence 334445555554457799999984
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.14 E-value=0.01 Score=62.98 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=57.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
.-.++.|+|.+|+||||||..++..... .-..++|++....++.. .+++++...+.. ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 4579999999999999999999887621 12357888877766654 556666543221 234455555555
Q ss_pred HHHcc-CCcEEEEEcccc
Q 042327 251 FNSLS-EKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (911)
...++ .+.-++|+|.+-
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 54443 455689999984
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.12 E-value=0.014 Score=58.92 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCceEEEEEeCCccCHHHHHHHHHHHcCCCCC----c---ccccC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPN----TFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDD----S---WRAKS 242 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 242 (911)
.-.++.|+|.+|+|||||++.+.... .... .-..++|+.....+....+ ..+++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCC
Confidence 45799999999999999999988853 1111 2357889987775555444 334455554320 0 01122
Q ss_pred HHH---HHHHHHHHcc-CCcEEEEEcccc
Q 042327 243 VEE---KALEIFNSLS-EKKFVLLLDDVW 267 (911)
Q Consensus 243 ~~~---~~~~l~~~l~-~k~~LlVlDdv~ 267 (911)
..+ ....+.+.+. .+.-+||+|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 222 2233444443 467799999984
No 243
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.07 E-value=0.0059 Score=63.67 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+.+.++|++|+|||+||+.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999987
No 244
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.91 E-value=0.025 Score=59.81 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=58.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc-------ccccC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPN----TFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS-------WRAKS 242 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 242 (911)
...++.|+|.+|+||||||..++... .... .-..++|++....++...+. .+++.++...+. ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCC
Confidence 45799999999999999999988764 1110 13478999988877776655 345666543210 01122
Q ss_pred HH---HHHHHHHHHcc--CCcEEEEEcccc
Q 042327 243 VE---EKALEIFNSLS--EKKFVLLLDDVW 267 (911)
Q Consensus 243 ~~---~~~~~l~~~l~--~k~~LlVlDdv~ 267 (911)
.+ +....+...++ .+.-+||+|.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 22 23444444543 456789999883
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.78 E-value=0.033 Score=59.31 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCceEEEEEeCCccCHHHHHHHHHHHcCCCCC---------c-cc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPN----TFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDD---------S-WR 239 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~-~~ 239 (911)
...++.|+|.+|+||||||..++... .... .-..++|++....++...+. .+++.++.... . ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 55799999999999999999988764 1111 23578999988877776654 34555554321 0 00
Q ss_pred ccCHHHHHHHHHHHcc---CCcEEEEEccc
Q 042327 240 AKSVEEKALEIFNSLS---EKKFVLLLDDV 266 (911)
Q Consensus 240 ~~~~~~~~~~l~~~l~---~k~~LlVlDdv 266 (911)
.....++...+.+.+. .+.-+||+|.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 1112233333444443 45668888988
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.77 E-value=0.0041 Score=61.35 Aligned_cols=114 Identities=17% Similarity=-0.039 Sum_probs=64.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNS 253 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (911)
...++.|+|..|+||||++..+.++.. .+-..++.+...... + -...|++.++............+..+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 457899999999999999998888772 222234444333221 1 1224455555433222223344555566655
Q ss_pred ccCCcE-EEEEcccccc--cccccccccCCCCCCCCcEEEEEcCchh
Q 042327 254 LSEKKF-VLLLDDVWER--VDLTKVGVPLPRPKNMASKVVFTTRSEE 297 (911)
Q Consensus 254 l~~k~~-LlVlDdv~~~--~~~~~~~~~~~~~~~~~s~iivTtR~~~ 297 (911)
+.+.++ +||+|.+... ...+.+. .+. ..|..||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~---~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILA---ENGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHH---HTTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHH---hCCCeEEEEecccc
Confidence 554544 9999999532 1122221 111 13678888888543
No 247
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.76 E-value=0.029 Score=57.69 Aligned_cols=87 Identities=10% Similarity=0.102 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHH-HHHHH
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEK-ALEIF 251 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 251 (911)
.++-|.|.+|+||||||.++.....+ ...-..++||+....++.. .+++++...+.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999888776521 1112468999988887754 367777654321 23344554 33222
Q ss_pred HH--c-cCCcEEEEEccccc
Q 042327 252 NS--L-SEKKFVLLLDDVWE 268 (911)
Q Consensus 252 ~~--l-~~k~~LlVlDdv~~ 268 (911)
.. + .++.-++|+|-+-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 3 45678999999943
No 248
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.70 E-value=0.0069 Score=63.93 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=34.5
Q ss_pred HHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc
Q 042327 165 KVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL 218 (911)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~ 218 (911)
++++.+.. ..-..++|+|..|+|||||++.+.+........+++ +++-+.+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 44555543 455689999999999999999987764111123444 356666543
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.70 E-value=0.0063 Score=58.15 Aligned_cols=118 Identities=19% Similarity=0.080 Sum_probs=60.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC---ccCHHHHHHHHHH---HcCCCCCcccccC------
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK---DLRVEYIQEVIAK---QMGFFDDSWRAKS------ 242 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~---~l~~~~~~~~~~~------ 242 (911)
...|-|++..|.||||.|-.+.-+. ..+=-.+.++.... ......++..+.- +++... .+...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf-~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGF-TWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTC-CCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccccc-ccCCCCcHHHHH
Confidence 3566777777799999999887776 22223455554433 2233344433310 000000 011111
Q ss_pred -HHHHHHHHHHHccCCcE-EEEEccccc-----ccccccccccCCCCCCCCcEEEEEcCchh
Q 042327 243 -VEEKALEIFNSLSEKKF-VLLLDDVWE-----RVDLTKVGVPLPRPKNMASKVVFTTRSEE 297 (911)
Q Consensus 243 -~~~~~~~l~~~l~~k~~-LlVlDdv~~-----~~~~~~~~~~~~~~~~~~s~iivTtR~~~ 297 (911)
.......+++.+.+.+| |||||++-. ..+.+++...+. .......||+|+|...
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCCc
Confidence 12223345566655555 999999832 222333322222 2334678999999863
No 250
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.66 E-value=0.025 Score=60.56 Aligned_cols=86 Identities=21% Similarity=0.150 Sum_probs=57.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc---ccccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS---WRAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 250 (911)
...++.|.|.+|+||||||..+...... .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 4568999999999999999998877521 12368999988776654 24555553221 1223456666555
Q ss_pred HHHcc-CCcEEEEEcccc
Q 042327 251 FNSLS-EKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (911)
....+ .+.-+||+|.+-
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 55544 345589999983
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.63 E-value=0.0071 Score=63.45 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHcCC---CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 160 ESTLQKVWRCIVED---PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 160 ~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+.+.+++... ....+.|+|..|+|||+||+.+++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444555565531 24688999999999999999999986
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.60 E-value=0.025 Score=60.30 Aligned_cols=86 Identities=22% Similarity=0.203 Sum_probs=56.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
.-.++.|+|.+|+||||||..+...... .-..++|++....++.. .++.++...+.. ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4579999999999999999998876521 12468899988776653 355566443211 223455555544
Q ss_pred HHHcc-CCcEEEEEcccc
Q 042327 251 FNSLS-EKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l~-~k~~LlVlDdv~ 267 (911)
..... .+.-+||+|.+-
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 44443 345699999984
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.47 E-value=0.017 Score=69.09 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHHHHcC---------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE---------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578998888888776642 123479999999999999999999886
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.46 E-value=0.015 Score=56.78 Aligned_cols=41 Identities=24% Similarity=0.493 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHcC---CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 159 LESTLQKVWRCIVE---DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 159 r~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|++.++++.+.+.. ....+|+|+|..|+||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55667777777754 356799999999999999999998765
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.37 E-value=0.03 Score=59.65 Aligned_cols=86 Identities=21% Similarity=0.154 Sum_probs=54.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
...++.|.|.+|+||||||..++..... .-..++|++....++.. .++.++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4579999999999999999998877521 12368899988777643 245555433211 122344444444
Q ss_pred HHHc-cCCcEEEEEcccc
Q 042327 251 FNSL-SEKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l-~~k~~LlVlDdv~ 267 (911)
.... ..+.-+||+|.+-
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 4333 2445589999983
No 256
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.32 E-value=0.015 Score=59.53 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=33.8
Q ss_pred cccchhhHHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.+..+.++.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 478998888887766542 233567799999999999999999876
No 257
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.23 E-value=0.023 Score=50.78 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=13.2
Q ss_pred CCEEeecCCCCccccccc-cCCccccEEecccc
Q 042327 584 LQQLDLSYSSIKELPREL-YALVNLKCLNLEHA 615 (911)
Q Consensus 584 L~~L~L~~~~i~~lp~~~-~~l~~L~~L~l~~~ 615 (911)
|++|+|++|+|+.+|... ..+++|+.|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 444444444444443332 22444444444443
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.20 E-value=0.039 Score=58.34 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCC----------CCC----ceEEEEEeCCccCHHHHHHHHHHHcCCCCCc--
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGP----------NTF----DCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS-- 237 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-- 237 (911)
.-.++.|+|.+|+||||+|..++... ... ..- ..++|++....++...+.. +++.++...+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 45799999999999999999987653 111 111 4789999888877776653 45556543210
Q ss_pred -----ccccCHH---HHHHHHHHHcc--CCcEEEEEccc
Q 042327 238 -----WRAKSVE---EKALEIFNSLS--EKKFVLLLDDV 266 (911)
Q Consensus 238 -----~~~~~~~---~~~~~l~~~l~--~k~~LlVlDdv 266 (911)
....+.+ +....+.+.+. .+.-+||+|.+
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 23334444444 34568888888
No 259
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.15 E-value=0.026 Score=68.37 Aligned_cols=45 Identities=29% Similarity=0.391 Sum_probs=36.5
Q ss_pred cccchhhHHHHHHHHHcCC---------CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVED---------PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.+..++.+...+... ....+.|+|..|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999888887766421 23589999999999999999998876
No 260
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.08 E-value=0.08 Score=56.49 Aligned_cols=162 Identities=9% Similarity=-0.107 Sum_probs=95.2
Q ss_pred HHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcccccCHHHH
Q 042327 167 WRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSWRAKSVEEK 246 (911)
Q Consensus 167 ~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 246 (911)
.+.+...-.++..++|..|.||++.++.+.+... ...|+....+.+....+..++..
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~--------------------- 66 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFS--------------------- 66 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHH---------------------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHH---------------------
Confidence 3334333457899999999999999999887651 12343222222333333333322
Q ss_pred HHHHHH-HccCCcEEEEEccccc---ccccccccccCCCCCCCCcEEEEEcCc-------hhHhhh-ccccceEEeccCC
Q 042327 247 ALEIFN-SLSEKKFVLLLDDVWE---RVDLTKVGVPLPRPKNMASKVVFTTRS-------EEVCGF-MEAHRKFKMVCLS 314 (911)
Q Consensus 247 ~~~l~~-~l~~k~~LlVlDdv~~---~~~~~~~~~~~~~~~~~~s~iivTtR~-------~~v~~~-~~~~~~~~l~~L~ 314 (911)
.+.. -+-+++-++|+|+++. ...++.+...+. ....++.+|++|.. ..+... ......++..+++
T Consensus 67 --~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le-~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 67 --LCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG-LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp --HHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHT-TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred --HhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHh-cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 2211 1235566888999854 233444444443 23346777766543 123322 2345678999999
Q ss_pred HHHHHHHHHHHhcCcccCCCccHHHHHHHHHHHcCCChhHHHH
Q 042327 315 DNDSWDLFQQKVGKEILNSHPDILELAQTVARECGGLPLALIT 357 (911)
Q Consensus 315 ~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~g~Plai~~ 357 (911)
.++....+.+.+.......+ .+.+..+++.++|...++..
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 99999888877643321111 25677888999998877655
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.05 E-value=0.019 Score=56.38 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 162 TLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 162 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
-.++|.+.+.. ....+|+|+|..|+|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555543 456899999999999999999998876
No 262
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.96 E-value=0.047 Score=54.44 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK 216 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~ 216 (911)
.-.+++|+|..|+|||||++.++..... .-..++|+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc
Confidence 3468999999999999999998866511 112466665433
No 263
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.81 E-value=0.024 Score=59.25 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=36.6
Q ss_pred CcccchhhHHHHHHHHHcC--CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE--DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|+...+.++.+.+.. .....|.|+|..|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3579999888888777653 334567799999999999999999875
No 264
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.79 E-value=0.094 Score=52.10 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=37.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhccc--CC-CCCceEEEEEeCCccCHHHHHHHHHHHcCC
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLE--GP-NTFDCVIWVVVSKDLRVEYIQEVIAKQMGF 233 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 233 (911)
.-.+++|+|..|+|||||++.++..... .. ..-..++|+.......... ...+.+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 4579999999999999999999874311 00 1234578887655444333 3344444443
No 265
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.78 E-value=0.072 Score=58.23 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHH
Q 042327 167 WRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAK 229 (911)
Q Consensus 167 ~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~ 229 (911)
++.|.. .+-..++|+|..|+|||||+..+..... ...-+.++++-+.+.. ...++++++..
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 444433 2234689999999999999999887751 1122445666666644 34555555543
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.77 E-value=0.074 Score=55.15 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMGFFDDSWRAKSVEEKALEIFN 252 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (911)
+..+|+|+|.+|+||||++..++.......+ ..+..+.... .....+.+....+..+.... ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 3569999999999999999998877621111 2355555432 22233334444444443321 1123334433343
Q ss_pred HccCCcEEEEEccc
Q 042327 253 SLSEKKFVLLLDDV 266 (911)
Q Consensus 253 ~l~~k~~LlVlDdv 266 (911)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 33457788843
No 267
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.73 E-value=0.016 Score=55.17 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999986
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.69 E-value=0.062 Score=57.26 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCC----ceEEEEEeCCccCHHHHHHHHHHHcCCCCCc----------cc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTF----DCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS----------WR 239 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~ 239 (911)
.-.++.|+|..|+|||||+..++... ...... ..++|++....+....+ ..+++..+...+. ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 56899999999999999999988765 111011 24589987665544433 3455554432110 00
Q ss_pred ccCHHHHHHHHHHHcc------CCcEEEEEcccc
Q 042327 240 AKSVEEKALEIFNSLS------EKKFVLLLDDVW 267 (911)
Q Consensus 240 ~~~~~~~~~~l~~~l~------~k~~LlVlDdv~ 267 (911)
.....+....+...+. .+.-+||+|.+-
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 1112233334444443 467799999984
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.69 E-value=0.033 Score=58.50 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=33.3
Q ss_pred cchhhHHHHHHHHHc----CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 157 VGLESTLQKVWRCIV----EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 157 vGr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
|+.+.-.+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455666666666653 3556779999999999999999988875
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.66 E-value=0.017 Score=54.59 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999886
No 271
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.62 E-value=0.18 Score=54.87 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred HHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCC------CC
Q 042327 165 KVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFF------DD 236 (911)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~ 236 (911)
++++.+.. .+-..++|+|..|+|||+|+..+.+... +.+-+.++++-+.+.. ...++.+++...-... ..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 44555544 3456789999999999999999988751 3445677888777754 4567777777653322 10
Q ss_pred ----cccccCHHH------HHHHHHHHc---cCCcEEEEEccc
Q 042327 237 ----SWRAKSVEE------KALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 237 ----~~~~~~~~~------~~~~l~~~l---~~k~~LlVlDdv 266 (911)
.....+... ..-.+.+++ +++.+||++||+
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 001112111 111233333 578999999998
No 272
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.59 E-value=0.055 Score=48.29 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=17.4
Q ss_pred CccEEEccCCCCCCcChhHHhcCCcccEEEccCCC
Q 042327 536 HLLTLFLDNNESLKIPNDFFQYMHSLKVLNLSRIK 570 (911)
Q Consensus 536 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 570 (911)
+|+.|+|++|.++.++.+.|..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34555555555555555444445555555554443
No 273
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.59 E-value=0.11 Score=56.73 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988776
No 274
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.58 E-value=0.11 Score=56.05 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCc-------ccccCH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLE---GPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDS-------WRAKSV 243 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (911)
.-.++.|+|..|+|||||+..++-.... ....-..++|++....+....+ +.+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 4579999999999999999976533201 0112356889987776665544 3466666653210 011122
Q ss_pred H---HHHHHHHHHc-cCCcEEEEEcccc
Q 042327 244 E---EKALEIFNSL-SEKKFVLLLDDVW 267 (911)
Q Consensus 244 ~---~~~~~l~~~l-~~k~~LlVlDdv~ 267 (911)
. +....+.+.+ ..+.-+||+|.+-
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 2222333333 2456788999873
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.55 E-value=0.018 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|+|+|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.49 E-value=0.021 Score=55.62 Aligned_cols=26 Identities=38% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 277
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.45 E-value=0.025 Score=60.09 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35899999998888777654 358899999999999999999876
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.32 E-value=0.025 Score=54.53 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|+|+.|+||||+++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998764
No 279
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.29 E-value=0.052 Score=52.04 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=18.3
Q ss_pred cCCcccEEEccCCCCcc-----cCccccCCCCCCEEeecCCCCc
Q 042327 557 YMHSLKVLNLSRIKLKS-----FPLGISKLVSLQQLDLSYSSIK 595 (911)
Q Consensus 557 ~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~i~ 595 (911)
.-+.|+.|+|++|.|.. +...+..-+.|++|+|++|.|.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455555555555541 2222333344555555555544
No 280
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.28 E-value=0.041 Score=52.78 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=77.3
Q ss_pred HhcCCcccEEEccCC-CCc-----ccCccccCCCCCCEEeecCCCCc-----cccccccCCccccEEeccccccccccCh
Q 042327 555 FQYMHSLKVLNLSRI-KLK-----SFPLGISKLVSLQQLDLSYSSIK-----ELPRELYALVNLKCLNLEHAEELITIPQ 623 (911)
Q Consensus 555 ~~~l~~L~~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 623 (911)
...-+.|+.|+|+++ .|. .+-..+..-.+|+.|+|++|.|. .+-..+..-+.|++|+|++|. ++.-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHH
Confidence 344567888888775 664 24456667789999999999987 344455556789999999984 432111
Q ss_pred ----hhhcCCccccEEEcccccccccccccccccccCC--chhHHHhhcCCCCCceEEEEEcchh
Q 042327 624 ----QVISNFSRLHVLRMYGTVSLNFLESLKDSILFGG--EEVLAEELLGLESLEVLTFTLRSVR 682 (911)
Q Consensus 624 ----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 682 (911)
..+..-+.|++|+++++....+ +. .......|..-+.|..|+++++...
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~i----------g~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVL----------GNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCC----------CHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCc----------CHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1245667799999986532011 10 1234566777788999998877654
No 281
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.26 E-value=0.13 Score=56.27 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=63.0
Q ss_pred HHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCC-------CC
Q 042327 166 VWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFF-------DD 236 (911)
Q Consensus 166 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~ 236 (911)
+++.+.. .+-..++|.|..|+|||+|+..+.+.. .+.+-+.++++-+.+.. ...++.+++...-.+. ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3455543 345678999999999999999998875 13456788888887755 4667777777642222 00
Q ss_pred c----ccccCH------HHHHHHHHHHc---cCCcEEEEEccc
Q 042327 237 S----WRAKSV------EEKALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 237 ~----~~~~~~------~~~~~~l~~~l---~~k~~LlVlDdv 266 (911)
. ....+. ....-.+.+++ +++.+|+++||+
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 011111 12222344555 468999999998
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.25 E-value=0.023 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 283
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.25 E-value=0.18 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.++|.+|+||||++..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988777
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.23 E-value=0.025 Score=53.85 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 042327 176 VIIGIYGMGGVGKTTLLTHINN 197 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~ 197 (911)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999988
No 285
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.21 E-value=0.025 Score=54.07 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.18 E-value=0.021 Score=54.00 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 287
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.13 E-value=0.042 Score=54.55 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 163 LQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 163 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444444444567899999999999999999988875
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.13 E-value=0.031 Score=54.36 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 172 EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 172 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.....+|+|+|+.|+||||+++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999998876
No 289
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.12 E-value=0.038 Score=61.75 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=37.0
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.+..++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 5899999998888777654 468899999999999999999876
No 290
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.12 E-value=0.03 Score=53.79 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.|+|+.|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999886
No 291
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.05 E-value=0.046 Score=58.93 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=36.5
Q ss_pred cccchhhHHHHHHHHHc-------------C--CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIV-------------E--DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899988888877772 1 134578999999999999999999886
No 292
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.04 E-value=0.0051 Score=59.03 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++.|+|..|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997766655
No 293
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.00 E-value=0.074 Score=55.14 Aligned_cols=89 Identities=18% Similarity=0.096 Sum_probs=49.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHHHHHcCCCCCc-ccccCHHHHHHHHHH
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVIAKQMGFFDDS-WRAKSVEEKALEIFN 252 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 252 (911)
..+|+++|.+|+||||++..++..... .-..+.++..... ....+.++...+..+...-. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 579999999999999999998877621 1224555554322 22233344445555442110 012344444444444
Q ss_pred HccCCcE-EEEEccc
Q 042327 253 SLSEKKF-VLLLDDV 266 (911)
Q Consensus 253 ~l~~k~~-LlVlDdv 266 (911)
.++.+.| ++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4442233 6777765
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.97 E-value=0.029 Score=54.10 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 295
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.93 E-value=0.024 Score=55.33 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.84 E-value=0.034 Score=54.15 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998875
No 297
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.83 E-value=0.052 Score=58.82 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=34.8
Q ss_pred cccchhhHHHHHHHHHc------------------------------CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIV------------------------------EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~------------------------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.+..++.+...+. ......+.++|+.|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 47888888777766551 1123568899999999999999999876
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.82 E-value=0.029 Score=53.51 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|.|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.81 E-value=0.032 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 300
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.81 E-value=0.051 Score=56.14 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999988776
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.76 E-value=0.037 Score=52.49 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 302
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.75 E-value=0.16 Score=55.16 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|.|+|.+|+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998877
No 303
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.73 E-value=0.026 Score=53.92 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.|.|+|+.|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998875
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.72 E-value=0.038 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 305
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.70 E-value=0.043 Score=54.29 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=31.9
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 158 GLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 158 Gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++..+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334445555555544577899999999999999999988875
No 306
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.68 E-value=0.24 Score=51.98 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC-ccCHHHHHHHHHHHcC
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK-DLRVEYIQEVIAKQMG 232 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~ 232 (911)
.+..+++|+|+.|+||||+++.++..... .. ..+.++...- .....+.+....+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~-g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN--HG-FSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH--TT-CCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cC-CEEEEEeecccccchHHHHHHHHHHcC
Confidence 45689999999999999999998877621 11 2344443221 1233444555566665
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.67 E-value=0.035 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|+|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.65 E-value=0.03 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..|.|+|+.|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999886
No 309
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.64 E-value=0.16 Score=53.22 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=37.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
.-.++.|.|.+|+||||+|..++... ...+ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 45789999999999999999988775 2222 567887755 4455666555544
No 310
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.63 E-value=0.037 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 311
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.63 E-value=0.1 Score=54.25 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH--HHHHHHHHHHcCCCCCc-ccccCHHHH-HHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV--EYIQEVIAKQMGFFDDS-WRAKSVEEK-ALE 249 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 249 (911)
...+|+|+|.+|+||||++..++..... .-..+.++... .+.. .+-+...++..++..-. ....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~---~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD---EGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh---cCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 4579999999999999999999887621 11234555432 2222 12233445555432100 011223332 223
Q ss_pred HHHHccCCcEEEEEccc
Q 042327 250 IFNSLSEKKFVLLLDDV 266 (911)
Q Consensus 250 l~~~l~~k~~LlVlDdv 266 (911)
+...+..+.-++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44444455557888866
No 312
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.61 E-value=0.036 Score=54.05 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 313
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.61 E-value=0.033 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998876
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.56 E-value=0.037 Score=53.98 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 315
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.53 E-value=0.043 Score=53.73 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998876
No 316
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.53 E-value=0.039 Score=55.70 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|+|+.|+|||||++.+.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999776
No 317
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.50 E-value=0.042 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999764
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.48 E-value=0.044 Score=52.49 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
....|+|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 319
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.48 E-value=0.029 Score=60.19 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=34.3
Q ss_pred CcccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|.+..++.+..........-|.|+|..|+|||++|+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3489988866655444433333348899999999999999999876
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.42 E-value=0.043 Score=53.09 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 321
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.40 E-value=0.043 Score=52.15 Aligned_cols=23 Identities=48% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|+|..|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998775
No 322
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.40 E-value=0.041 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHIN 196 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~ 196 (911)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999644
No 323
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.39 E-value=0.035 Score=53.28 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.38 E-value=0.044 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.37 E-value=0.051 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999875
No 326
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.35 E-value=0.048 Score=53.47 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|.|.|++|+||||.|+.+.+++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999987
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.35 E-value=0.041 Score=54.71 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 328
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.34 E-value=0.047 Score=53.56 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 329
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.34 E-value=0.12 Score=51.89 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD 217 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~ 217 (911)
.-.++.|.|.+|+||||||..++..... .-..++|++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 4568999999999999999887665421 1235777775543
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.32 E-value=0.034 Score=53.26 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|+|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.30 E-value=0.042 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 042327 176 VIIGIYGMGGVGKTTLLTHINN 197 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~ 197 (911)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 332
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.29 E-value=0.094 Score=61.74 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=56.2
Q ss_pred CcccchhhHHHHHHHHHcC-------------CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 154 PTVVGLESTLQKVWRCIVE-------------DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
..+.|.+..++++.+.+.- ...+-|.++|++|.|||.+|+++++.. ... ++.++..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~~~--- 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIKGP--- 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECCHH---
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEeccc---
Confidence 4567888888887665531 123567899999999999999999987 222 2333321
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHHHc-cCCcEEEEEccccc
Q 042327 221 EYIQEVIAKQMGFFDDSWRAKSVEEKALEIFNSL-SEKKFVLLLDDVWE 268 (911)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 268 (911)
+++... ...++. ..+.+.+.- +..+.+|+||+++.
T Consensus 546 -----~l~s~~-------vGese~-~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 546 -----ELLTMW-------FGESEA-NVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp -----HHHTTT-------CSSCHH-HHHHHHHHHHTTCSEEEECSCGGG
T ss_pred -----hhhccc-------cchHHH-HHHHHHHHHHHcCCceeechhhhH
Confidence 111111 122333 344444433 55789999999953
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.28 E-value=0.048 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.25 E-value=0.048 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 335
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.25 E-value=0.47 Score=49.80 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQ 230 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 230 (911)
...++.|.|.+|+||||+|..++..... .-..++|++.- .+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 4568999999999999999998887622 22356676553 4455666555443
No 336
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.21 E-value=0.054 Score=52.66 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999998875
No 337
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.20 E-value=0.049 Score=56.96 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK 216 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~ 216 (911)
++.+||+|.|-|||||||.+-.+..-..+ . -..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~-~--GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L--GKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH-C--CCeEEEEecCC
Confidence 46799999999999999999887766521 1 12356666553
No 338
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.20 E-value=0.053 Score=53.03 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999988764
No 339
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.17 E-value=0.31 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999999988776
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.17 E-value=0.045 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 341
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.17 E-value=0.079 Score=54.74 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 342
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.15 E-value=0.04 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.13 E-value=0.053 Score=50.68 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35799999999999999999998876
No 344
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.12 E-value=0.05 Score=53.14 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 042327 176 VIIGIYGMGGVGKTTLLTHINN 197 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~ 197 (911)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.11 E-value=0.055 Score=52.03 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998775
No 346
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.10 E-value=0.05 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.525 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 347
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.09 E-value=0.16 Score=65.35 Aligned_cols=86 Identities=22% Similarity=0.191 Sum_probs=58.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
..++|.|+|++|+|||+||.++.... ...=..++|+++...++... ++.++...+.. ...+.++..+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 56799999999999999999998876 22334688888888777665 45555332211 122344555555
Q ss_pred HHHc-cCCcEEEEEcccc
Q 042327 251 FNSL-SEKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l-~~k~~LlVlDdv~ 267 (911)
++.. +.+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5443 3466799999994
No 348
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.05 E-value=0.042 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 349
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.05 E-value=0.24 Score=52.23 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc
Q 042327 164 QKVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD 217 (911)
Q Consensus 164 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~ 217 (911)
-++++.+.. .+-..++|+|..|+|||+|+..+.+........+.+ +++-+.+.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 356666654 445678999999999999999988865111123333 45655554
No 350
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.04 E-value=0.057 Score=54.70 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55789999999999999999998865
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.01 E-value=0.053 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.00 E-value=0.053 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 353
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.97 E-value=0.058 Score=51.89 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+|+|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998874
No 354
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.96 E-value=0.063 Score=58.60 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=36.0
Q ss_pred CcccchhhHHHHHHHHHcC--------------CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVE--------------DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++|.+..++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578988888877655521 123568899999999999999999986
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.93 E-value=0.053 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|.|+|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999876
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.88 E-value=0.055 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 357
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.85 E-value=0.062 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|.|+|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.83 E-value=0.04 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=18.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998876
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.73 E-value=0.059 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999875
No 360
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.70 E-value=0.091 Score=50.37 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=27.8
Q ss_pred HHHHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 163 LQKVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 163 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+..+..++.+ .....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444455543 234479999999999999999998886
No 361
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.68 E-value=0.1 Score=54.53 Aligned_cols=43 Identities=30% Similarity=0.298 Sum_probs=30.1
Q ss_pred cchhhHHHHHHHHHcC----CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 157 VGLESTLQKVWRCIVE----DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 157 vGr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|-...+..+...+.. ....+|+|.|..|+||||+|+.+..-.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444444444433332 245699999999999999999987765
No 362
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.65 E-value=0.06 Score=52.65 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44689999999999999999998875
No 363
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.64 E-value=0.07 Score=55.75 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+|+|+|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 356799999999999999999998866
No 364
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.62 E-value=0.072 Score=49.38 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..-.+++|+|..|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455799999999999999999998765
No 365
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.56 E-value=0.067 Score=52.43 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 366
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.56 E-value=0.076 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999988764
No 367
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.52 E-value=0.094 Score=53.12 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.52 E-value=0.039 Score=54.24 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|+|.|..|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998876
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.46 E-value=0.065 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|.|.|+.|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 370
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.46 E-value=0.066 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 371
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.42 E-value=0.071 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 372
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.39 E-value=0.12 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|.|.|+.|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998876
No 373
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.38 E-value=0.058 Score=53.23 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 374
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.38 E-value=0.071 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 375
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.37 E-value=0.34 Score=53.32 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998776
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.33 E-value=0.073 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998875
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.33 E-value=0.073 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 378
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.32 E-value=0.076 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.483 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|.|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999886
No 379
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.26 E-value=0.52 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|+|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 380
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.17 E-value=0.29 Score=50.65 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCCcc-cccCHHHHHHHHHH
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDDSW-RAKSVEEKALEIFN 252 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 252 (911)
..+++|+|.+|+||||++..++..... .-..+.++...-.. .....+....+..++..-.. ...+..++.....+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999998887621 11234555432211 11122334445544332100 12344444333333
Q ss_pred Hc-cCCcEEEEEccc
Q 042327 253 SL-SEKKFVLLLDDV 266 (911)
Q Consensus 253 ~l-~~k~~LlVlDdv 266 (911)
.+ ..+.=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 33 234447788876
No 381
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.11 E-value=0.056 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++++|+|..|+|||||++.+..-+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999988776
No 382
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.09 E-value=0.087 Score=51.89 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998875
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.96 E-value=0.099 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 384
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.93 E-value=0.091 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+..+|+|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35699999999999999999998776
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.90 E-value=0.078 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999887
No 386
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.90 E-value=0.22 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
-|+|-|.-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999987
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.89 E-value=0.091 Score=51.53 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+|.|+|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998876
No 388
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.83 E-value=0.078 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+++|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988775
No 389
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.80 E-value=0.091 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|.|.|++|+||||+|+.+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987
No 390
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.79 E-value=0.32 Score=53.35 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=55.3
Q ss_pred HHHHHHcC-CCCeEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCc-eEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----
Q 042327 165 KVWRCIVE-DPAVIIGIYGMGGVGKTTLL-THINNKFLEGPNTFD-CVIWVVVSKDL-RVEYIQEVIAKQMGFFDD---- 236 (911)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~---- 236 (911)
+.++.+.. .+-..++|+|..|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++.+.+...-.+...
T Consensus 164 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 34555543 34457899999999999996 4666654 245 34667676644 456777776653211100
Q ss_pred cccccCH-HHH-----HHHHHHHc--cCCcEEEEEccc
Q 042327 237 SWRAKSV-EEK-----ALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 237 ~~~~~~~-~~~-----~~~l~~~l--~~k~~LlVlDdv 266 (911)
.....+. ... .-.+.+++ +++.+|+++||+
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 0011111 111 11233333 579999999998
No 391
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.72 E-value=0.097 Score=54.84 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.71 E-value=0.093 Score=51.97 Aligned_cols=25 Identities=16% Similarity=0.487 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 393
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.70 E-value=0.078 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 394
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.69 E-value=0.29 Score=53.65 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=55.6
Q ss_pred HHHHHcC-CCCeEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCc-eEEEEEeCCcc-CHHHHHHHHHHHcCCCCCc----
Q 042327 166 VWRCIVE-DPAVIIGIYGMGGVGKTTLL-THINNKFLEGPNTFD-CVIWVVVSKDL-RVEYIQEVIAKQMGFFDDS---- 237 (911)
Q Consensus 166 l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~---- 237 (911)
.++.+.. .+-..++|+|..|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++.+.+...-.+....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 4455543 34456899999999999996 4677764 234 34667676644 4567777776543221100
Q ss_pred ccccCHHHH------HHHHHHHc--cCCcEEEEEccc
Q 042327 238 WRAKSVEEK------ALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 238 ~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv 266 (911)
....+.... .-.+.+++ +++.+|+++||+
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 011111111 11233333 589999999998
No 395
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.63 E-value=0.11 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 396
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.62 E-value=0.098 Score=52.33 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.. .+++|+|+.|+|||||++.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999988764
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.60 E-value=0.1 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINN 197 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~ 197 (911)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 398
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.53 E-value=0.17 Score=54.87 Aligned_cols=100 Identities=11% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCC--------CCCc-eEEEEEeCCc-cCHHHHHHHHHHHcCCC
Q 042327 166 VWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGP--------NTFD-CVIWVVVSKD-LRVEYIQEVIAKQMGFF 234 (911)
Q Consensus 166 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~F~-~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 234 (911)
.++.+.. .+-..++|.|..|+|||+|+..+.+.. ... ++-+ .++++-+.+. ..+.++.+++.+.-.+.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 3444433 234567899999999999999998876 221 1112 5566666654 34566666655431010
Q ss_pred C-----CcccccCHHHH-----HHHHHHHc---cCCcEEEEEccc
Q 042327 235 D-----DSWRAKSVEEK-----ALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 235 ~-----~~~~~~~~~~~-----~~~l~~~l---~~k~~LlVlDdv 266 (911)
. ...+....... .-.+.+++ +++.+|+++||+
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 0 00011122211 22344554 378999999998
No 399
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.52 E-value=0.1 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.46 E-value=0.098 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..|.|.|+.|+||||+|+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999886
No 401
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.38 E-value=0.1 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.34 E-value=0.11 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINN 197 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~ 197 (911)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999883
No 403
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.33 E-value=0.11 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 404
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.33 E-value=0.092 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 405
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.31 E-value=0.11 Score=51.92 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999988764
No 406
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.26 E-value=0.26 Score=53.41 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=56.4
Q ss_pred HHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCc----eEEEEEeCCc-cCHHHHHHHHHHHcCCCCC---
Q 042327 166 VWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFD----CVIWVVVSKD-LRVEYIQEVIAKQMGFFDD--- 236 (911)
Q Consensus 166 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~----~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~--- 236 (911)
.++.+.. .+-..++|.|..|+|||+|+..+.+.. .. +-+ .++++-+.+. ..+.++.+++...-.+...
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV 217 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA-TV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMF 217 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH-Hh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEE
Confidence 3444433 233457899999999999999999886 22 222 5666666654 3456777766553111000
Q ss_pred -cccccCHHH------HHHHHHHHc---cCCcEEEEEccc
Q 042327 237 -SWRAKSVEE------KALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 237 -~~~~~~~~~------~~~~l~~~l---~~k~~LlVlDdv 266 (911)
.....+... ..-.+.+++ +++.+|+++||+
T Consensus 218 ~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 218 MNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 001112111 112344554 378999999999
No 407
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.21 E-value=0.16 Score=53.01 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD 217 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~ 217 (911)
...++|+|+|-||+||||+|..++....+ . -..++-|+....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~--G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L--GKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C--CCeEEEEeCCCC
Confidence 46789999999999999999998887622 1 224666666543
No 408
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.20 E-value=0.11 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINN 197 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~ 197 (911)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999999873
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.18 E-value=0.31 Score=52.01 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=29.0
Q ss_pred HHHHHHHHc--CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 163 LQKVWRCIV--EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 163 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..++++.+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3567899999999999999999987765
No 410
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.18 E-value=0.13 Score=53.51 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+++|+|..|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998876
No 411
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.17 E-value=0.12 Score=53.91 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+|+|+|..|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998865
No 412
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.14 E-value=0.26 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+|.|.|+.|+||||+|+.+++..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 413
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.13 E-value=0.076 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=16.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHIN-NKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 199 (911)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 414
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.12 E-value=0.15 Score=59.01 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=37.1
Q ss_pred cccchhhHHHHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 155 TVVGLESTLQKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 155 ~~vGr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.+..++.+...+..+ ..+.|+|..|+||||||+.+....
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 4799988888887777665 578999999999999999999876
No 415
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.06 E-value=0.12 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999886
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.03 E-value=0.24 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....|+|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999988
No 417
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.97 E-value=0.12 Score=51.60 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999997764
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.96 E-value=0.12 Score=51.57 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|.|.|+.|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 419
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.91 E-value=0.089 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
-.+++|+|+.|+|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.80 E-value=0.13 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999876
No 421
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.79 E-value=0.14 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998875
No 422
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.78 E-value=0.28 Score=53.79 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=50.2
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCc-eEEEEEeCCcc-CHHHHHHHHHHHcCC--------CCCccccc-
Q 042327 174 PAVIIGIYGMGGVGKTTLL-THINNKFLEGPNTFD-CVIWVVVSKDL-RVEYIQEVIAKQMGF--------FDDSWRAK- 241 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~--------~~~~~~~~- 241 (911)
+-..++|+|..|+|||+|| ..+.+.. . -+ .++++-+.+.. .+.++.+.+...-.+ ..+.....
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 3456889999999999996 4666654 2 34 35667676644 455666655442111 01110000
Q ss_pred -----CHHHHHHHHHHHccCCcEEEEEccc
Q 042327 242 -----SVEEKALEIFNSLSEKKFVLLLDDV 266 (911)
Q Consensus 242 -----~~~~~~~~l~~~l~~k~~LlVlDdv 266 (911)
..-..++.++. +++.+|+++||+
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 01122333443 589999999998
No 423
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.75 E-value=0.11 Score=52.98 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44689999999999999999987654
No 424
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.71 E-value=0.13 Score=52.27 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999987754
No 425
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.64 E-value=0.56 Score=51.25 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=55.3
Q ss_pred HHHHHcC-CCCeEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCCc----c
Q 042327 166 VWRCIVE-DPAVIIGIYGMGGVGKTTLL-THINNKFLEGPNTFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDDS----W 238 (911)
Q Consensus 166 l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~ 238 (911)
.++.+.. .+-..++|.|..|+|||+|| ..+.+.. ..-..++++-+.+.. .+.++.+.+.+.-.+...- .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4455543 34456899999999999996 5666643 222245777777754 4567777765542221100 0
Q ss_pred cccCHHHH------HHHHHHHc--cCCcEEEEEccc
Q 042327 239 RAKSVEEK------ALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 239 ~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv 266 (911)
...+.... .-.+.+++ +++.+||++||+
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 11111111 11222333 589999999998
No 426
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.62 E-value=0.12 Score=51.74 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999988764
No 427
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.58 E-value=0.13 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
.-.+++|+|..|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999874
No 428
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.58 E-value=0.12 Score=51.27 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 429
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.55 E-value=0.1 Score=51.02 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987764
No 430
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.54 E-value=0.49 Score=52.28 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=41.8
Q ss_pred HHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC-HHHHHHHH
Q 042327 165 KVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR-VEYIQEVI 227 (911)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 227 (911)
++++.+.. .+-..++|.|..|+|||+|+..+.+.. +-+.++++-+.+... ..++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 44555543 345678999999999999999988764 235788888887654 45666654
No 431
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.51 E-value=0.14 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45799999999999999999987654
No 432
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.50 E-value=0.4 Score=52.63 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=56.8
Q ss_pred HHHHHHcC-CCCeEEEEEcCCCCcHHHHH-HHHHhhccc---CCCCCc-eEEEEEeCCcc-CHHHHHHHHHHHcCCCCC-
Q 042327 165 KVWRCIVE-DPAVIIGIYGMGGVGKTTLL-THINNKFLE---GPNTFD-CVIWVVVSKDL-RVEYIQEVIAKQMGFFDD- 236 (911)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~---~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~- 236 (911)
+.++.+.. .+-..++|+|..|+|||+|| ..+.+.... ...+-+ .++++-+.+.. .+.++.+.+...-.+...
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 34555543 34456899999999999995 566666510 012334 46777777654 466777777653211100
Q ss_pred ---cccccCHH-HH-----HHHHHHHc--cCCcEEEEEccc
Q 042327 237 ---SWRAKSVE-EK-----ALEIFNSL--SEKKFVLLLDDV 266 (911)
Q Consensus 237 ---~~~~~~~~-~~-----~~~l~~~l--~~k~~LlVlDdv 266 (911)
.....+.. .. .-.+.+++ +++.+|+++||+
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 00111111 11 11233333 589999999998
No 433
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.49 E-value=0.12 Score=52.25 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999987754
No 434
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.44 E-value=0.13 Score=52.43 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999998764
No 435
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.42 E-value=0.15 Score=51.14 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999987653
No 436
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.39 E-value=0.14 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
.-.+++|+|..|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 437
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.38 E-value=0.15 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999988764
No 438
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.36 E-value=0.13 Score=51.70 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987764
No 439
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.23 E-value=0.15 Score=51.47 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987654
No 440
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.21 E-value=0.17 Score=53.68 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998876
No 441
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.16 E-value=0.24 Score=50.24 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+++|+|+.|+||||+++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 455799999999999999999987765
No 442
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.13 E-value=0.17 Score=51.38 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998776
No 443
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.11 E-value=0.32 Score=53.01 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=58.0
Q ss_pred HHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCC--CCceEEEEEeCCcc-CHHHHHHHHHHHcCCCCC----c
Q 042327 166 VWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPN--TFDCVIWVVVSKDL-RVEYIQEVIAKQMGFFDD----S 237 (911)
Q Consensus 166 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~ 237 (911)
+++.+.. .+-..++|.|..|+|||+|+..+++.. ...+ .=+.++++-+.+.. ...++.+++...-.+... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 3454443 334567889999999999999999886 2211 11456666666643 456777777654211100 0
Q ss_pred ccccCHHH------HHHHHHHHc---cCCcEEEEEccc
Q 042327 238 WRAKSVEE------KALEIFNSL---SEKKFVLLLDDV 266 (911)
Q Consensus 238 ~~~~~~~~------~~~~l~~~l---~~k~~LlVlDdv 266 (911)
....+... ..-.+.+++ +++.+|+++||+
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 01111111 122344454 368999999998
No 444
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.05 E-value=0.16 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999987754
No 445
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.05 E-value=0.18 Score=51.90 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|.|+|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999876
No 446
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.05 E-value=0.16 Score=51.50 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45699999999999999999987754
No 447
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.02 E-value=0.14 Score=51.38 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999988765
No 448
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.98 E-value=0.19 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988763
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.95 E-value=0.17 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999998853
No 450
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.94 E-value=0.18 Score=52.14 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456799999999999999999988764
No 451
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.83 E-value=0.17 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999987654
No 452
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.82 E-value=0.15 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 453
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.79 E-value=0.15 Score=52.20 Aligned_cols=26 Identities=38% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 454
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.78 E-value=0.18 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 455
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.76 E-value=0.55 Score=60.53 Aligned_cols=86 Identities=22% Similarity=0.186 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
.-+++.|.|.+|+||||||..++.... ..-..++|++.....+... ++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 457999999999999999999988772 1224688998877776542 56666543221 234556665555
Q ss_pred HHHc-cCCcEEEEEcccc
Q 042327 251 FNSL-SEKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l-~~k~~LlVlDdv~ 267 (911)
.... +.+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 5443 3455699999984
No 456
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.75 E-value=0.45 Score=46.45 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|.|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999887
No 457
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.74 E-value=0.6 Score=51.82 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHHHHcC-CCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCc-cCHHHHHHHH
Q 042327 165 KVWRCIVE-DPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKD-LRVEYIQEVI 227 (911)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i 227 (911)
++++.|.. .+-..++|.|..|+|||+|+..+.+.. +-+.++++-+.+. ....++++++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 34555544 355679999999999999999998874 2356778877765 3445555554
No 458
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.67 E-value=0.18 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..|+|+|..|+|||||++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 568999999999999999998763
No 459
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.60 E-value=0.84 Score=51.33 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAK 229 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 229 (911)
.-.++.|.|.+|+||||+|..++.+. .. .+-..++|++... +..++...++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~-a~-~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW-GT-AMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH-TT-TSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH-HH-hcCCcEEEEeccC--CHHHHHHHHHH
Confidence 45789999999999999999998876 21 1123577876644 45566665543
No 460
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.58 E-value=0.15 Score=48.56 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 042327 177 IIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998774
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.57 E-value=0.21 Score=49.90 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|+|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998876
No 462
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.53 E-value=0.099 Score=54.05 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=20.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+..+|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 463
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.50 E-value=0.38 Score=50.97 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=32.6
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccC
Q 042327 171 VEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLR 219 (911)
Q Consensus 171 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~ 219 (911)
.....+++.+.|.||+||||+|..++..... ...-..++-|+.....+
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~-~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLAL-AQPNEQFLLISTDPAHN 61 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCC
Confidence 3456689999999999999999998877620 01223466666654433
No 464
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.49 E-value=0.22 Score=52.19 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988776
No 465
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.45 E-value=0.16 Score=50.44 Aligned_cols=25 Identities=36% Similarity=0.415 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998765
No 466
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.44 E-value=0.46 Score=49.97 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=33.6
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCH
Q 042327 171 VEDPAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRV 220 (911)
Q Consensus 171 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~ 220 (911)
.....+++.+.|.||+||||+|..++.... ..-..++-|+.....+.
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l 58 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNL 58 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCCh
Confidence 344568889999999999999999888772 22335666766544433
No 467
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.39 E-value=0.2 Score=54.89 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998875
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.28 E-value=0.23 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 469
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.27 E-value=0.49 Score=46.95 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEE
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWV 212 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 212 (911)
...|.|.|+.|+||||+++.+.+... ...+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence 46899999999999999999998872 2345534443
No 470
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.24 E-value=0.53 Score=51.15 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 172 EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 172 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.....+++|+|+.|+||||+++.+....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 4556799999999999999999998876
No 471
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.22 E-value=0.12 Score=59.35 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=33.1
Q ss_pred CcccchhhHHHHHHHHHcCCCCe-----------EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 154 PTVVGLESTLQKVWRCIVEDPAV-----------IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 154 ~~~vGr~~~~~~l~~~l~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.++|.+..+..+...+..+..+ -|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 44678777666655444433211 58899999999999999988775
No 472
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.17 E-value=0.51 Score=60.03 Aligned_cols=86 Identities=21% Similarity=0.154 Sum_probs=58.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
.-+++.|.|.+|+||||||.+++..... .-..++|++.....+.. .++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 4579999999999999999998877622 22468899888877654 256666543321 233455555555
Q ss_pred HHHc-cCCcEEEEEcccc
Q 042327 251 FNSL-SEKKFVLLLDDVW 267 (911)
Q Consensus 251 ~~~l-~~k~~LlVlDdv~ 267 (911)
.... +.+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHhcCCCEEEECCHH
Confidence 5443 3455699999984
No 473
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.16 E-value=0.2 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999987664
No 474
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.15 E-value=0.2 Score=47.68 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
-+.|.|.|..|+||||||..+..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998775
No 475
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.13 E-value=0.2 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 042327 177 IIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 177 vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.++|+|..|+|||||.+.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 476
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.98 E-value=0.49 Score=46.13 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..|.|.|..|+||||+++.+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999887
No 477
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.92 E-value=0.2 Score=50.87 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 175 AVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 175 ~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
-.+++|+|..|+|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998764
No 478
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.92 E-value=0.21 Score=46.32 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
-.|.|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999988754
No 479
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.82 E-value=0.23 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 480
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.81 E-value=0.4 Score=45.82 Aligned_cols=26 Identities=35% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988764
No 481
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.76 E-value=0.25 Score=52.93 Aligned_cols=27 Identities=22% Similarity=0.031 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999865
No 482
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.76 E-value=0.38 Score=49.01 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCC
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSK 216 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~ 216 (911)
++|+|.|-||+||||+|..++.... .. -..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-AM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-TT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-HC--CCcEEEEcCCC
Confidence 5788899999999999999888872 12 22466666543
No 483
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.66 E-value=0.23 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999988764
No 484
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.61 E-value=0.32 Score=54.10 Aligned_cols=43 Identities=9% Similarity=0.032 Sum_probs=31.7
Q ss_pred cchhhHHHHHHHHHc--CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 157 VGLESTLQKVWRCIV--EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 157 vGr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
+.|.+..+.+.+... .....+|.+.|+.|+||||+|+.+....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 445444444445442 2355789999999999999999999998
No 485
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.58 E-value=0.2 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 55799999999999999999987654
No 486
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.57 E-value=0.22 Score=51.24 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.++.|+|.+|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999988654
No 487
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.54 E-value=0.38 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
-.|.+.|.||+||||+|..+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 358889999999999998888876
No 488
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.50 E-value=0.6 Score=59.38 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhcccCCCCCceEEEEEeCCccCHHHHHHHHHHHcCCCCCcc---cccCHHHHHHHH
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKFLEGPNTFDCVIWVVVSKDLRVEYIQEVIAKQMGFFDDSW---RAKSVEEKALEI 250 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 250 (911)
+-++|-|+|+.|+||||||.++.... +..=..++|+.+-+..+... ++.+++..+.. .....++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45899999999999999999988765 33446789999888887764 78888766542 233444444444
Q ss_pred HHHcc-CCcEEEEEccc
Q 042327 251 FNSLS-EKKFVLLLDDV 266 (911)
Q Consensus 251 ~~~l~-~k~~LlVlDdv 266 (911)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 44443 45568999998
No 489
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.42 E-value=0.43 Score=45.36 Aligned_cols=34 Identities=26% Similarity=0.564 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 164 QKVWRCIVEDPAVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 164 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
.++.+ +.......|+|+|..|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33445677899999999999999998854
No 490
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.38 E-value=0.28 Score=46.44 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 042327 173 DPAVIIGIYGMGGVGKTTLLTHINNK 198 (911)
Q Consensus 173 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 198 (911)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998765
No 491
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.36 E-value=0.24 Score=50.97 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|..|+|||||++.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999987764
No 492
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.35 E-value=0.25 Score=52.82 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 493
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.25 E-value=0.25 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988654
No 494
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.23 E-value=0.25 Score=48.57 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
-.++|.|++|+||||+|+.+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999887
No 495
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.15 E-value=0.24 Score=46.42 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468999999999999999987654
No 496
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.13 E-value=0.25 Score=52.34 Aligned_cols=26 Identities=42% Similarity=0.526 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44689999999999999999998765
No 497
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.06 E-value=0.3 Score=47.42 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 172 EDPAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 172 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..+.-.|+|+|.+|+|||||+..+.+..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3445678899999999999999887654
No 498
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.03 E-value=0.25 Score=51.27 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|.+|+|||||++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988776
No 499
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.00 E-value=0.26 Score=52.22 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 174 PAVIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 174 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45799999999999999999987654
No 500
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.99 E-value=0.26 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 042327 176 VIIGIYGMGGVGKTTLLTHINNKF 199 (911)
Q Consensus 176 ~vi~I~G~gGiGKTtLa~~v~~~~ 199 (911)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
Done!