BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042328
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 32 EGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAID 91
E EV K ++ F+YTG P L K L AA D Y +E L+ +C + ++ NA +
Sbjct: 222 EPEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAE 279
Query: 92 FLRIGYNYQLDELRDASLNFI 112
L + + D+L+ +++FI
Sbjct: 280 ILILADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 32 EGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAID 91
E EV K ++ F+YTG P L K L AA D Y +E L+ +C + ++ NA +
Sbjct: 73 EPEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAE 130
Query: 92 FLRIGYNYQLDELR 105
L + + D+L+
Sbjct: 131 ILILADLHSADQLK 144
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 32 EGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAID 91
E EV K F+YTG P + A Y +E L+ C + ++ NA +
Sbjct: 82 EPEVFKEXXCFIYTGKAPNLDKXADDLLAAAD--KYALERLKVXCEDALCSNLSVENAAE 139
Query: 92 FLRIGYNYQLDELRDASLNFI 112
L + + D+L+ +++FI
Sbjct: 140 ILILADLHSADQLKTQAVDFI 160
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse,
Truncated 37 Residues From The C-Terminus, To 1.6
Angstrom Resolution
Length = 424
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 KDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPR 50
KD LD K+ +SS+D VA+ G++LK + +L +LPR
Sbjct: 21 KDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWL--KALPR 61
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
Length = 471
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 KDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPR 50
KD LD K+ +SS+D VA+ G++LK + +L +LPR
Sbjct: 31 KDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWL--KALPR 71
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
Length = 461
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 KDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPR 50
KD LD K+ +SS+D VA+ G++LK + +L +LPR
Sbjct: 21 KDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWL--KALPR 61
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At
2.1 Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At
2.1 Angstroms Resolution
Length = 421
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 KDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPR 50
KD LD K+ +SS+D VA+ G++LK + +L +LPR
Sbjct: 15 KDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWL--KALPR 55
>pdb|1S2J|A Chain A, Crystal Structure Of The Drosophila Pattern-Recognition
Receptor Pgrp-Sa
pdb|1S2J|B Chain B, Crystal Structure Of The Drosophila Pattern-Recognition
Receptor Pgrp-Sa
Length = 209
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 49 PREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYN---YQLDEL- 104
P KL++ G + G +Y++ +R V +HH + + S + I N Y +EL
Sbjct: 38 PTIKLKRQWGGKPSLGLHYQVRPIRYVVIHHT-VTGECSGLLKCAEILQNMQAYHQNELD 96
Query: 105 -RDASLNFIVKN 115
D S NF++ N
Sbjct: 97 FNDISYNFLIGN 108
>pdb|1SXR|A Chain A, Drosophila Peptidoglycan Recognition Protein (Pgrp)-Sa
pdb|1SXR|B Chain B, Drosophila Peptidoglycan Recognition Protein (Pgrp)-Sa
Length = 183
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 49 PREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYN---YQLDEL- 104
P KL++ G + G +Y++ +R V +HH + + S + I N Y +EL
Sbjct: 12 PTIKLKRQWGGKPSLGLHYQVRPIRYVVIHHT-VTGECSGLLKCAEILQNMQAYHQNELD 70
Query: 105 -RDASLNFIVKN 115
D S NF++ N
Sbjct: 71 FNDISYNFLIGN 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,518,900
Number of Sequences: 62578
Number of extensions: 171331
Number of successful extensions: 352
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 12
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)