Query 042328
Match_columns 156
No_of_seqs 116 out of 1189
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02790 Kelch-like protein; P 99.9 7.6E-27 1.6E-31 186.4 9.7 122 1-129 41-167 (480)
2 PHA02713 hypothetical protein; 99.9 8.3E-25 1.8E-29 177.3 12.6 121 1-129 46-168 (557)
3 PHA03098 kelch-like protein; P 99.9 1.4E-24 3.1E-29 175.4 11.9 119 1-129 31-150 (534)
4 KOG4441 Proteins containing BT 99.9 2.6E-24 5.6E-29 174.4 11.2 123 1-129 56-179 (571)
5 KOG4350 Uncharacterized conser 99.8 2.7E-20 5.8E-25 141.5 7.5 126 1-130 64-191 (620)
6 KOG2075 Topoisomerase TOP1-int 99.7 2.7E-17 5.8E-22 127.2 10.9 135 1-142 139-275 (521)
7 KOG4682 Uncharacterized conser 99.7 8.5E-17 1.8E-21 122.2 11.1 119 3-127 90-213 (488)
8 KOG0783 Uncharacterized conser 99.6 1.3E-15 2.9E-20 124.2 8.0 124 1-128 731-859 (1267)
9 PF00651 BTB: BTB/POZ domain; 99.5 7.1E-15 1.5E-19 95.4 3.7 77 1-83 31-110 (111)
10 KOG4591 Uncharacterized conser 99.5 9.9E-14 2.1E-18 97.0 8.0 130 1-140 89-218 (280)
11 smart00225 BTB Broad-Complex, 99.5 1.2E-13 2.5E-18 85.5 5.5 71 1-77 19-90 (90)
12 KOG0511 Ankyrin repeat protein 98.7 1.7E-07 3.7E-12 71.7 9.2 123 3-129 312-443 (516)
13 KOG1987 Speckle-type POZ prote 98.2 6.6E-06 1.4E-10 62.2 6.7 122 1-128 120-247 (297)
14 KOG2838 Uncharacterized conser 98.1 1.8E-06 3.8E-11 63.7 2.3 91 1-93 271-397 (401)
15 KOG2716 Polymerase delta-inter 98.0 3E-05 6.5E-10 56.3 6.9 76 4-83 27-104 (230)
16 PF07707 BACK: BTB And C-termi 97.8 6.2E-05 1.3E-09 47.7 5.6 41 89-129 1-41 (103)
17 KOG3473 RNA polymerase II tran 97.7 0.00011 2.3E-09 45.9 5.3 66 1-68 36-111 (112)
18 PF11822 DUF3342: Domain of un 97.5 0.00012 2.6E-09 55.4 3.4 76 5-85 28-105 (317)
19 smart00875 BACK BTB And C-term 97.4 0.0003 6.5E-09 44.1 4.0 41 89-129 1-41 (101)
20 smart00512 Skp1 Found in Skp1 96.8 0.0026 5.7E-08 40.7 4.6 40 2-45 22-63 (104)
21 KOG1665 AFH1-interacting prote 96.4 0.0071 1.5E-07 43.8 4.6 69 6-79 35-106 (302)
22 KOG1724 SCF ubiquitin ligase, 95.9 0.045 9.7E-07 37.9 6.7 81 3-87 26-130 (162)
23 KOG0783 Uncharacterized conser 95.9 0.018 3.8E-07 49.1 5.4 47 1-49 578-635 (1267)
24 PF02214 BTB_2: BTB/POZ domain 95.7 0.0029 6.4E-08 39.5 0.1 66 5-76 23-94 (94)
25 KOG2714 SETA binding protein S 95.4 0.032 7E-07 44.0 4.8 65 5-74 36-102 (465)
26 KOG1778 CREB binding protein/P 95.2 0.028 6.1E-07 43.1 3.9 128 2-134 47-176 (319)
27 PF01466 Skp1: Skp1 family, di 94.1 0.11 2.3E-06 31.4 3.9 47 53-99 12-61 (78)
28 PF03931 Skp1_POZ: Skp1 family 93.6 0.13 2.8E-06 29.6 3.5 37 2-44 21-58 (62)
29 COG5201 SKP1 SCF ubiquitin lig 92.4 1.2 2.5E-05 29.7 6.9 65 22-88 39-126 (158)
30 KOG2075 Topoisomerase TOP1-int 92.3 0.37 8E-06 38.8 5.3 59 83-144 184-247 (521)
31 KOG2838 Uncharacterized conser 91.9 0.23 5E-06 37.3 3.6 69 1-71 150-220 (401)
32 KOG2715 Uncharacterized conser 88.7 0.78 1.7E-05 32.0 3.7 58 22-83 64-121 (210)
33 PF11822 DUF3342: Domain of un 87.9 0.23 5.1E-06 38.0 0.9 41 83-123 71-111 (317)
34 KOG0511 Ankyrin repeat protein 86.3 2.1 4.6E-05 33.8 5.3 68 1-76 170-238 (516)
35 PF00651 BTB: BTB/POZ domain; 85.3 2 4.3E-05 26.9 4.2 31 85-115 80-110 (111)
36 PF07707 BACK: BTB And C-termi 80.5 4.3 9.4E-05 25.0 4.3 60 58-117 2-75 (103)
37 KOG4682 Uncharacterized conser 79.7 1.6 3.6E-05 34.6 2.5 32 53-84 171-202 (488)
38 PHA02713 hypothetical protein; 70.9 11 0.00023 31.5 5.2 34 83-116 90-123 (557)
39 smart00875 BACK BTB And C-term 70.6 15 0.00033 22.2 4.9 58 59-116 3-74 (101)
40 KOG2723 Uncharacterized conser 66.0 21 0.00046 26.1 5.3 46 33-78 59-104 (221)
41 PHA03098 kelch-like protein; P 64.5 8.8 0.00019 31.5 3.5 33 84-116 73-105 (534)
42 PHA02790 Kelch-like protein; P 57.3 11 0.00024 30.7 2.9 43 74-116 75-120 (480)
43 PF01466 Skp1: Skp1 family, di 53.4 39 0.00084 20.1 4.2 35 83-117 10-44 (78)
44 KOG3840 Uncharaterized conserv 53.1 11 0.00025 29.0 2.1 47 22-71 139-186 (438)
45 KOG4441 Proteins containing BT 42.8 56 0.0012 27.5 4.9 33 83-115 101-133 (571)
46 PF02637 GatB_Yqey: GatB domai 37.9 1.2E+02 0.0027 20.2 6.3 70 29-119 40-109 (148)
47 PRK00927 tryptophanyl-tRNA syn 37.7 1.9E+02 0.0042 22.4 8.3 50 99-151 268-317 (333)
48 TIGR02425 decarb_PcaC 4-carbox 31.4 1.5E+02 0.0033 19.4 9.7 73 25-99 27-102 (123)
49 PRK12282 tryptophanyl-tRNA syn 27.6 3E+02 0.0065 21.5 8.5 108 22-151 203-316 (333)
50 KOG1077 Vesicle coat complex A 26.9 1.1E+02 0.0024 26.8 4.1 67 28-107 398-464 (938)
51 TIGR00133 gatB glutamyl-tRNA(G 22.1 4.6E+02 0.01 21.7 7.8 71 29-120 369-439 (478)
No 1
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=7.6e-27 Score=186.42 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=114.0
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeee--CCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTT--MEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCL 77 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l--~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 77 (156)
||+|+||++|| ++++|+.+ +|.+ .+++ +.+++.+|+|+|||++.+ +.++|++++.+|++||++.+++.|.
T Consensus 41 Aa~S~YFraMF~~~~~Es~~---~v~~~~~~v~--~~~l~~lldy~YTg~l~i--t~~nV~~ll~aA~~Lqi~~v~~~C~ 113 (480)
T PHA02790 41 KKLSPYFRTHLRQKYTKNKD---PVTRVCLDLD--IHSLTSIVIYSYTGKVYI--DSHNVVNLLRASILTSVEFIIYTCI 113 (480)
T ss_pred hhcCHHHHHHhcCCcccccc---ceEEEecCcC--HHHHHHHHHhheeeeEEE--ecccHHHHHHHHHHhChHHHHHHHH
Confidence 68999999999 99999954 4555 3899 999999999999999999 9999999999999999999999999
Q ss_pred HHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcc--hhHHHHH
Q 042328 78 HHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFS--DKYEESA 129 (156)
Q Consensus 78 ~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~--~~f~~l~ 129 (156)
++|.++++++||+.++.+|+.|++.+|.+.|.+||.+||.++.++ ++|..|+
T Consensus 114 ~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 114 NFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred HHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 999999999999999999999999999999999999999999986 7887754
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=8.3e-25 Score=177.29 Aligned_cols=121 Identities=14% Similarity=0.212 Sum_probs=114.0
Q ss_pred CcCcHHHHHhh-cCCCCCC-CCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPI-SSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 78 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~-~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~ 78 (156)
||+|+||++|| ++|+|.. + .+|.|++++ +.+++.+|+|+|||. + +.+++++++.+|++|+++.|++.|.+
T Consensus 46 aa~S~YF~amF~~~~~e~~~~--~~v~l~~v~--~~~~~~ll~y~Yt~~--i--~~~nv~~ll~aA~~lqi~~l~~~C~~ 117 (557)
T PHA02713 46 AAGSKYFRTLFTTPMIIRDLV--TRVNLQMFD--KDAVKNIVQYLYNRH--I--SSMNVIDVLKCADYLLIDDLVTDCES 117 (557)
T ss_pred hhcCHHHHHHhcCCchhhccC--ceEEeccCC--HHHHHHHHHHhcCCC--C--CHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 68999999999 9999864 6 789999999 999999999999986 4 67899999999999999999999999
Q ss_pred HHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHH
Q 042328 79 HMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESA 129 (156)
Q Consensus 79 ~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~ 129 (156)
+|.++++++||+.++.++..+++..|.+.|.+||.+||.++.++++|.+|+
T Consensus 118 ~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~ 168 (557)
T PHA02713 118 YIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTV 168 (557)
T ss_pred HHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCC
Confidence 999999999999999988888888899999999999999999999999864
No 3
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=175.35 Aligned_cols=119 Identities=17% Similarity=0.352 Sum_probs=114.0
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| ++|+ + ..|.+++ + +++|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|+..|+++
T Consensus 31 aa~S~yF~~mf~~~~~---~--~~i~l~~-~--~~~~~~~l~y~Ytg~~~i--~~~~~~~ll~~A~~l~~~~l~~~C~~~ 100 (534)
T PHA03098 31 SSSSEYFKKMFKNNFK---E--NEINLNI-D--YDSFNEVIKYIYTGKINI--TSNNVKDILSIANYLIIDFLINLCINY 100 (534)
T ss_pred HhhhHHHHHHHhCCCC---C--ceEEecC-C--HHHHHHHHHHhcCCceEE--cHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 57899999999 8888 4 6799999 9 999999999999999998 899999999999999999999999999
Q ss_pred HhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHH
Q 042328 80 MPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESA 129 (156)
Q Consensus 80 l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~ 129 (156)
|...++.+||+.++.+|..|++.+|.+.|.+||.+||.++.++++|.+|+
T Consensus 101 l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~ 150 (534)
T PHA03098 101 IIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLS 150 (534)
T ss_pred HHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCC
Confidence 99999999999999999999999999999999999999999999998875
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=2.6e-24 Score=174.40 Aligned_cols=123 Identities=20% Similarity=0.300 Sum_probs=120.4
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
||+|+||++|| ++++|+.+ .+|.+.+++ +.+++.+++|+||+.+.+ +.++|++|+.+|+++|++.+...|.++
T Consensus 56 Aa~S~YFraMFt~~l~e~~~--~~i~l~~v~--~~~l~~ll~y~Yt~~i~i--~~~nVq~ll~aA~~lQi~~v~~~C~~f 129 (571)
T KOG4441|consen 56 AACSPYFRAMFTSGLKESKQ--KEINLEGVD--PETLELLLDYAYTGKLEI--SEDNVQELLEAASLLQIPEVVDACCEF 129 (571)
T ss_pred HhccHHHHHHhcCCcccccc--eEEEEecCC--HHHHHHHHHHhhcceEEe--chHhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 68999999999 99999999 999999999 999999999999999999 999999999999999999999999999
Q ss_pred HhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHH
Q 042328 80 MPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESA 129 (156)
Q Consensus 80 l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~ 129 (156)
|..+++++||+.+..+|+.|++.+|.+.+..|+.+||.++..+++|..|+
T Consensus 130 L~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~ 179 (571)
T KOG4441|consen 130 LESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLS 179 (571)
T ss_pred HHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCC
Confidence 99999999999999999999999999999999999999999999999964
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.82 E-value=2.7e-20 Score=141.51 Aligned_cols=126 Identities=21% Similarity=0.340 Sum_probs=118.8
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccc-hHHHHHHHHHhccccCchHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREK-LQKHVVGLFAAGDNYEIEYLREVCLH 78 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~-~~~~~~~ll~~A~~~~~~~l~~~c~~ 78 (156)
|+||+||++|+ |||.|+.+ ..|.+++-. ..+|..+|+|+|||++.... ..+...+.|.+|++|+++.|..+..+
T Consensus 64 AaRs~yFRAlLYgGm~Es~q--~~ipLq~t~--~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSe 139 (620)
T KOG4350|consen 64 AARSSYFRALLYGGMQESHQ--QLIPLQETN--SEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISE 139 (620)
T ss_pred HHHHHHHHHHHhhhhhhhhh--ccccccccc--HHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 68999999999 99999999 999999999 99999999999999998732 45667899999999999999999999
Q ss_pred HHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHHh
Q 042328 79 HMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESAS 130 (156)
Q Consensus 79 ~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~ 130 (156)
++...+..+|++.++..|..|++.+|.+.|+.|.-+|..+++..++|..|+.
T Consensus 140 Yl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk 191 (620)
T KOG4350|consen 140 YLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSK 191 (620)
T ss_pred HHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhH
Confidence 9999999999999999999999999999999999999999999999998875
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.73 E-value=2.7e-17 Score=127.18 Aligned_cols=135 Identities=18% Similarity=0.220 Sum_probs=119.8
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|..|.+|.+|| |++.++.. .+|.++|++ |.+|..+|+|+|++.+.+ ..++++.++.+|++|.++.|.+.|.++
T Consensus 139 a~gS~VFdaMf~g~~a~~~s--~ei~lpdve--paaFl~~L~flYsdev~~--~~dtvi~tl~~AkKY~VpaLer~CVkf 212 (521)
T KOG2075|consen 139 ADGSDVFDAMFYGGLAEDAS--LEIRLPDVE--PAAFLAFLRFLYSDEVKL--AADTVITTLYAAKKYLVPALERQCVKF 212 (521)
T ss_pred hcchHHHHHHhccCcccccC--ceeecCCcC--hhHhHHHHHHHhcchhhh--hHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45799999999 99999977 899999999 999999999999999998 999999999999999999999999999
Q ss_pred HhhhCChhhHHHHHHH-HhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHHhhCcchHHHHHHH
Q 042328 80 MPASFQSSNAIDFLRI-GYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRG 142 (156)
Q Consensus 80 l~~~l~~~n~~~~l~~-a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~l~~~~~~~ 142 (156)
|..++.++|....+.. |..++-++|...|++-|..++...+..++|.+.... .+.+.++++.
T Consensus 213 lr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~-~dt~~evl~r 275 (521)
T KOG2075|consen 213 LRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST-RDTYEEVLRR 275 (521)
T ss_pred HHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH-HHHHHHHHhh
Confidence 9999888887766655 999999999999999999999999999999988643 3444444443
No 7
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.72 E-value=8.5e-17 Score=122.16 Aligned_cols=119 Identities=16% Similarity=0.222 Sum_probs=109.7
Q ss_pred CcHHHHHhh-cCCCCCCCCCCCeee----CCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHH
Q 042328 3 RSSILKDCL-DGKLLPISSTDGMTT----MEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCL 77 (156)
Q Consensus 3 ~S~yF~~mf-~~~~e~~~~~~~i~l----~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 77 (156)
.|+||++|| |.|+|+.. +.|.+ |+|+ ..+++.++.-+|.+++.+ ..+.+.+++++|..++++++...|.
T Consensus 90 QS~yf~smf~Gtw~es~~--~iIqleI~Dp~Id--~~al~~a~gsLY~dEveI--~l~dv~gvlAaA~~lqldgl~qrC~ 163 (488)
T KOG4682|consen 90 QSEYFKSMFSGTWKESSM--NIIQLEIPDPNID--VVALQVAFGSLYRDEVEI--KLSDVVGVLAAACLLQLDGLIQRCG 163 (488)
T ss_pred ccHHHHHHhccccChhhC--ceEEEEcCCCccc--HHHHHHHHhhhhhhheec--cHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 699999999 99999998 55444 3589 999999999999999999 9999999999999999999999999
Q ss_pred HHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHH
Q 042328 78 HHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEE 127 (156)
Q Consensus 78 ~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~ 127 (156)
+.+++.+++++++.++..+..|++..+.+.|.+++..|+-.+....-+.+
T Consensus 164 evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~e 213 (488)
T KOG4682|consen 164 EVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKE 213 (488)
T ss_pred HHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999877664444
No 8
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.62 E-value=1.3e-15 Score=124.22 Aligned_cols=124 Identities=17% Similarity=0.230 Sum_probs=106.4
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHcc-CCCCcc---chHHHHHHHHHhccccCchHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYT-GSLPRE---KLQKHVVGLFAAGDNYEIEYLREV 75 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt-~~~~~~---~~~~~~~~ll~~A~~~~~~~l~~~ 75 (156)
+||++||+.|| ..|.|+.. ..+....+. .+.+..+|+|+|+ +..... ...++...++.+||.|.+..|+..
T Consensus 731 ~aRlEYF~smf~~~w~E~sS--~t~~~~p~~--~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~I 806 (1267)
T KOG0783|consen 731 SARLEYFSSMFQFVWMESSS--ITVNLSPLT--VEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSI 806 (1267)
T ss_pred eeHHHHHHHHHHHHHhhhcc--ceeecCcch--HHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 47899999999 99999977 556666677 8999999999995 333321 145678899999999999999999
Q ss_pred HHHHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHH
Q 042328 76 CLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEES 128 (156)
Q Consensus 76 c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l 128 (156)
|+..|.+.++..++..++.+|..|++.+|+..|++||+.|+..++......+.
T Consensus 807 ce~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~ 859 (1267)
T KOG0783|consen 807 CEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEW 859 (1267)
T ss_pred HHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhh
Confidence 99999999999999999999999999999999999999999988776544443
No 9
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.53 E-value=7.1e-15 Score=95.36 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=69.3
Q ss_pred CcCcHHHHHhh-cC-CCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccch-HHHHHHHHHhccccCchHHHHHHH
Q 042328 1 AARSSILKDCL-DG-KLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKL-QKHVVGLFAAGDNYEIEYLREVCL 77 (156)
Q Consensus 1 aa~S~yF~~mf-~~-~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~-~~~~~~ll~~A~~~~~~~l~~~c~ 77 (156)
+++|+||+.|| ++ +++... .++.+++++ +.+|..+++|+|+|.+.+ + .+++.+++.+|++|+++.|+..|.
T Consensus 31 ~~~S~~F~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~~~l~~~Y~~~~~~--~~~~~~~~ll~lA~~~~~~~L~~~~~ 104 (111)
T PF00651_consen 31 AARSPYFRNLFEGSKFKESTV--PEISLPDVS--PEAFEAFLEYMYTGEIEI--NSDENVEELLELADKLQIPELKKACE 104 (111)
T ss_dssp HHHBHHHHHHHTTTTSTTSSE--EEEEETTSC--HHHHHHHHHHHHHSEEEE--E-TTTHHHHHHHHHHTTBHHHHHHHH
T ss_pred hccchhhhhcccccccccccc--ccccccccc--ccccccccccccCCcccC--CHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 46899999999 66 566665 578899999 999999999999999998 6 889999999999999999999999
Q ss_pred HHHhhh
Q 042328 78 HHMPAS 83 (156)
Q Consensus 78 ~~l~~~ 83 (156)
++|.++
T Consensus 105 ~~l~~~ 110 (111)
T PF00651_consen 105 KFLQES 110 (111)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 998765
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.50 E-value=9.9e-14 Score=97.03 Aligned_cols=130 Identities=18% Similarity=0.287 Sum_probs=105.7
Q ss_pred CcCcHHHHHhhcCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHH
Q 042328 1 AARSSILKDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHM 80 (156)
Q Consensus 1 aa~S~yF~~mf~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 80 (156)
||||.+++-- ++..|. . ....++|.+ +++|+..++|+||+.++.-.++++...+.+.|++|+++-|++.|++-+
T Consensus 89 AARsD~Wkfa-N~~dek-s--e~~~~dDad--~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l 162 (280)
T KOG4591|consen 89 AARSDFWKFA-NGGDEK-S--EELDLDDAD--FEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGL 162 (280)
T ss_pred hhhcchhhhc-cCCCcc-h--hhhcccccC--HHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666322 221222 2 457788999 999999999999999998778889999999999999999999999999
Q ss_pred hhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHHhhCcchHHHHH
Q 042328 81 PASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLIT 140 (156)
Q Consensus 81 ~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~l~~~~~ 140 (156)
...+.++||+.++++|...+..+|...|...|..+|.++- ..+|.++ .|.++-.++
T Consensus 163 ~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~FaqM---s~aLLYklI 218 (280)
T KOG4591|consen 163 GALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFAQM---SAALLYKLI 218 (280)
T ss_pred hhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHHhc---cHHHHHHHH
Confidence 9999999999999999999999999999999999888773 3445544 345554443
No 11
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.46 E-value=1.2e-13 Score=85.53 Aligned_cols=71 Identities=30% Similarity=0.357 Sum_probs=64.8
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCL 77 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 77 (156)
+++|+||+.|| +++.+... ..+.+++++ +.+|..+++|+|++++.+ +..++.+++.+|++|+++.|...|+
T Consensus 19 ~~~s~~f~~~~~~~~~~~~~--~~i~l~~~~--~~~f~~~l~~ly~~~~~~--~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 19 AACSPYFKALFSGDFKESKK--SEIYLDDVS--PEDFRALLEFLYTGKLDL--PEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred hhcCHHHHHHHcCCCccCCC--CEEEecCCC--HHHHHHHHHeecCceeec--CHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 46799999999 88887766 889999999 999999999999999988 7779999999999999999999884
No 12
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.68 E-value=1.7e-07 Score=71.71 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=89.9
Q ss_pred CcHHHHHhh-cCCCCCC--CCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchH---HHHHH
Q 042328 3 RSSILKDCL-DGKLLPI--SSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEY---LREVC 76 (156)
Q Consensus 3 ~S~yF~~mf-~~~~e~~--~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~---l~~~c 76 (156)
|.+||+.|| |.+.|+. .-.....+|+.. ..+.+.+++|+|++..++ ..+-+.+++..|+++.+.. |+.+.
T Consensus 312 R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi--~~~~A~dvll~ad~lal~~dr~Lkt~a 387 (516)
T KOG0511|consen 312 RVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDI--IFDVASDVLLFADKLALADDRLLKTAA 387 (516)
T ss_pred HHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccc--hHHHHhhHHHHhhHhhhhhhhhhhhhh
Confidence 578999999 9999854 212456677888 899999999999999998 8889999999999987762 34444
Q ss_pred HHHHhhh---CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHH
Q 042328 77 LHHMPAS---FQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESA 129 (156)
Q Consensus 77 ~~~l~~~---l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~ 129 (156)
...|.+. ++.-++.+++.++.......|...+..++..++..++..+++....
T Consensus 388 s~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~ 443 (516)
T KOG0511|consen 388 SAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSL 443 (516)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 4444433 3344566777777777777777777777777777777777666643
No 13
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.16 E-value=6.6e-06 Score=62.23 Aligned_cols=122 Identities=22% Similarity=0.181 Sum_probs=98.5
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHH---HHHHHhccccCchHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHV---VGLFAAGDNYEIEYLREVC 76 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~---~~ll~~A~~~~~~~l~~~c 76 (156)
+++|++|+.|+ ....+... ..+.+.+.+ +..++.+..|.|+..-.. ..+.. ..++..+.+++.+.++..|
T Consensus 120 ~a~~~V~~~~~~~d~~~~~~--~~~~~~d~~--~~~~~~~~~F~~~~s~~~--~~~~~~~~~~~~a~~f~~~~~~lk~~~ 193 (297)
T KOG1987|consen 120 VARSEVFEAMGKSDVFKESS--KLITLLEEK--PEVLEALNGFQVLPSQVS--SVERIFEKHPDLAAAFKYKNRHLKLAC 193 (297)
T ss_pred Eeeecceeeecccccchhcc--ccccccccc--hhhHhhhceEEEeccchH--HHHHhhcCChhhhhccccccHHHHHHH
Confidence 46788999999 66555555 556888888 999999999999855443 33344 3888999999999999999
Q ss_pred HHHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHH--hHHHHhcchhHHHH
Q 042328 77 LHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVK--NVEELVFSDKYEES 128 (156)
Q Consensus 77 ~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~--~~~~v~~~~~f~~l 128 (156)
...+...+...++...+..+..++...+...+..++.. ++.++....++...
T Consensus 194 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~ 247 (297)
T KOG1987|consen 194 MPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKE 247 (297)
T ss_pred HHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHH
Confidence 99999999999988999999999999999999999986 77777655554433
No 14
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.09 E-value=1.8e-06 Score=63.74 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=64.1
Q ss_pred CcCcHHHHHhh-cCCCCCCC-------CCCCeeeCC-CCCcHHHHH-HHhhhHccCCCCccc------------------
Q 042328 1 AARSSILKDCL-DGKLLPIS-------STDGMTTME-VAEEGEVLK-ALVDFLYTGSLPREK------------------ 52 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~-------~~~~i~l~~-~~~~~~~~~-~ll~~~Yt~~~~~~~------------------ 52 (156)
|+||++|+.++ ...++..+ .+..|.+++ +- |.+|. .+|+++||+.++...
T Consensus 271 aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~--PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAit 348 (401)
T KOG2838|consen 271 AARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIF--PKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAIT 348 (401)
T ss_pred HhhhHHHHHHHHHHhhcccccccccccCCceeechhhhc--chhhhhhhhhhheecccchhhcccCCcccccHHHHHHHH
Confidence 68999999999 55544422 124566665 45 56665 458999998776410
Q ss_pred --------hHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHHHH
Q 042328 53 --------LQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFL 93 (156)
Q Consensus 53 --------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l 93 (156)
.-..+++|+++|-+|.++.|.+.|++.+......++....+
T Consensus 349 naGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~cL 397 (401)
T KOG2838|consen 349 NAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNGCL 397 (401)
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 12557889999999999999999999988877766654433
No 15
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.99 E-value=3e-05 Score=56.31 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=61.1
Q ss_pred cHHHHHhh-cCCC-CCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHHh
Q 042328 4 SSILKDCL-DGKL-LPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMP 81 (156)
Q Consensus 4 S~yF~~mf-~~~~-e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 81 (156)
..+|++|+ +.+. +... ...|-| |=+ |.-|..+|+||-.|++....+...+.+|+.-|.+|.+++|.+.|+..+.
T Consensus 27 dg~fk~m~e~~i~~~~d~-s~~IFI-DRS--pKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~ 102 (230)
T KOG2716|consen 27 DGFFKTMLETDIPVEKDE-SGCIFI-DRS--PKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIA 102 (230)
T ss_pred hhHHHHHhhcCCccccCC-cCcEEe-cCC--hhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 35899999 7664 2222 133444 667 9999999999998888876788999999999999999999999999766
Q ss_pred hh
Q 042328 82 AS 83 (156)
Q Consensus 82 ~~ 83 (156)
..
T Consensus 103 ~~ 104 (230)
T KOG2716|consen 103 RL 104 (230)
T ss_pred hc
Confidence 54
No 16
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.82 E-value=6.2e-05 Score=47.74 Aligned_cols=41 Identities=37% Similarity=0.596 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHH
Q 042328 89 AIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESA 129 (156)
Q Consensus 89 ~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~ 129 (156)
|+.++.+|..|++.+|.+.|.+||.+||.++..+++|.+++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~ 41 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELP 41 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCC
Confidence 78999999999999999999999999999999999998865
No 17
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.74 E-value=0.00011 Score=45.94 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=51.1
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhH-----ccCC-C---CccchHHHHHHHHHhccccC
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFL-----YTGS-L---PREKLQKHVVGLFAAGDNYE 68 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~-----Yt~~-~---~~~~~~~~~~~ll~~A~~~~ 68 (156)
|.-|.-.++|| |+...+....+++.+++++ ..+++.+.+|+ |++. . +.++.++.+++||.+|+++.
T Consensus 36 AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 36 AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred hhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 34588899999 7765554433889999999 99999999997 5554 1 12348899999999999875
No 18
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.45 E-value=0.00012 Score=55.43 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=59.7
Q ss_pred HHHHHhh-cCCCCCCCCCCCeeeC-CCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHHhh
Q 042328 5 SILKDCL-DGKLLPISSTDGMTTM-EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPA 82 (156)
Q Consensus 5 ~yF~~mf-~~~~e~~~~~~~i~l~-~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~ 82 (156)
.||+..+ ....++.. ...|.|. .-| -.+|+=+++|+......+ +++||..++.-|++++|+.|.+.|..|+..
T Consensus 28 ~YF~~~l~~~~~~~~~-~~~idisVhCD--v~iF~WLm~yv~~~~p~l--~~~NvvsIliSS~FL~M~~Lve~cl~y~~~ 102 (317)
T PF11822_consen 28 RYFAEYLSRYINDSQR-WEEIDISVHCD--VHIFEWLMRYVKGEPPSL--TPSNVVSILISSEFLQMESLVEECLQYCHD 102 (317)
T ss_pred HHHHHHHhhcccccCc-CCCcceEEecC--hhHHHHHHHHhhcCCCcC--CcCcEEEeEehhhhhccHHHHHHHHHHHHH
Confidence 5899999 53333322 1445554 467 889999999999876666 999999999999999999999999999876
Q ss_pred hCC
Q 042328 83 SFQ 85 (156)
Q Consensus 83 ~l~ 85 (156)
+++
T Consensus 103 ~~~ 105 (317)
T PF11822_consen 103 HMS 105 (317)
T ss_pred hHH
Confidence 643
No 19
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.37 E-value=0.0003 Score=44.15 Aligned_cols=41 Identities=32% Similarity=0.491 Sum_probs=37.3
Q ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHH
Q 042328 89 AIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESA 129 (156)
Q Consensus 89 ~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~ 129 (156)
|+.++.+|..|++..|.+.|.+||.+|+..+.++++|..++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~ 41 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELS 41 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCC
Confidence 46788899999999999999999999999999999998874
No 20
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.85 E-value=0.0026 Score=40.68 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=30.6
Q ss_pred cCcHHHHHhh-cCCCC-CCCCCCCeeeCCCCCcHHHHHHHhhhHcc
Q 042328 2 ARSSILKDCL-DGKLL-PISSTDGMTTMEVAEEGEVLKALVDFLYT 45 (156)
Q Consensus 2 a~S~yF~~mf-~~~~e-~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt 45 (156)
..|..++.|+ +...+ ... ..|.+++++ ..++..+++|++.
T Consensus 22 ~~S~~i~~~l~~~~~~~~~~--~~Ipl~~v~--~~~L~~Vi~yc~~ 63 (104)
T smart00512 22 RQSKTIKAMIEDLGVDDENN--NPIPLPNVT--SKILSKVIEYCEH 63 (104)
T ss_pred HHHHHHHHHHHccCcccCCC--CCccCCCcC--HHHHHHHHHHHHH
Confidence 3588899999 43222 222 589999999 9999999999964
No 21
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.38 E-value=0.0071 Score=43.84 Aligned_cols=69 Identities=13% Similarity=0.301 Sum_probs=53.5
Q ss_pred HHHHhh-c-CC-CCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 6 ILKDCL-D-GK-LLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 6 yF~~mf-~-~~-~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
-..+|| + ++ .+... ....+-|=+ |..|+.+|.|+-.|.++. .+.-++.++++.|++|++-+|+.+.++.
T Consensus 35 MLa~MF~~~g~~~~~d~--kGa~lIDRs--p~yFepIlNyLr~Gq~~~-~s~i~~lgvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 35 MLAAMFSGRGAMCQEDK--KGAVLIDRS--PKYFEPILNYLRDGQIPS-LSDIDCLGVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred HHHHHHccCCCcccccc--CceEEEccC--chhhHHHHHHHhcCceee-cCCccHHHHHHHhhHHhhHhHHhHHhhh
Confidence 456788 2 22 22222 445666778 999999999999999886 4556889999999999999999998883
No 22
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.045 Score=37.94 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=55.1
Q ss_pred CcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCC---------------c--------cchHHHHH
Q 042328 3 RSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLP---------------R--------EKLQKHVV 58 (156)
Q Consensus 3 ~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~---------------~--------~~~~~~~~ 58 (156)
.|....+++ ...-.... ..|.++++. ..+|..++.|++.-.-. + -.+...+.
T Consensus 26 ~s~~i~~~~~~~~~~~~~--~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLf 101 (162)
T KOG1724|consen 26 QSQTISAHMIEDGCADEN--DPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLF 101 (162)
T ss_pred HhHHHHHHHHHcCCCccC--CccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHH
Confidence 456666777 22122222 369999999 99999999999862211 0 01235678
Q ss_pred HHHHhccccCchHHHHHHHHHHhhhCChh
Q 042328 59 GLFAAGDNYEIEYLREVCLHHMPASFQSS 87 (156)
Q Consensus 59 ~ll~~A~~~~~~~l~~~c~~~l~~~l~~~ 87 (156)
+++.+|+++.+++|...|.+.+..-+...
T Consensus 102 dli~AAnyLdi~gLl~~~ck~va~mikgk 130 (162)
T KOG1724|consen 102 DLILAANYLDIKGLLDLTCKTVANMIKGK 130 (162)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHccC
Confidence 88999999999999988888766655433
No 23
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=95.92 E-value=0.018 Score=49.12 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=34.1
Q ss_pred CcCcHHHHHhh-cCCCCCCC----------CCCCeeeCCCCCcHHHHHHHhhhHccCCCC
Q 042328 1 AARSSILKDCL-DGKLLPIS----------STDGMTTMEVAEEGEVLKALVDFLYTGSLP 49 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~----------~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~ 49 (156)
++||++|+.+| ...+.+.. .-..|.++++. |..|+.+|+|+||+..-
T Consensus 578 ~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt~~ 635 (1267)
T KOG0783|consen 578 CARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDTLL 635 (1267)
T ss_pred EeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccccc
Confidence 57999999999 43333222 11235577899 99999999999998543
No 24
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.70 E-value=0.0029 Score=39.54 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=42.5
Q ss_pred HHHHHhh-cC---CCCCCCCCCCeeeCCCCCcHHHHHHHhhhHcc-CCCCccchHHHHHHHHHhccccCchHH-HHHH
Q 042328 5 SILKDCL-DG---KLLPISSTDGMTTMEVAEEGEVLKALVDFLYT-GSLPREKLQKHVVGLFAAGDNYEIEYL-REVC 76 (156)
Q Consensus 5 ~yF~~mf-~~---~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt-~~~~~~~~~~~~~~ll~~A~~~~~~~l-~~~c 76 (156)
.+|..|+ ++ ...... ..+-+ |=+ |..|+.+|+|+.+ +.++. .+......++.-|++|+++.+ .+.|
T Consensus 23 s~l~~~~~~~~~~~~~~~~--~~~fi-DRd--p~~F~~IL~ylr~~~~l~~-~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 23 SLLARLFSGERSDDYDDDD--GEYFI-DRD--PELFEYILNYLRTGGKLPI-PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp STTTSHHHTGHGGGEETTT--TEEEE-SS---HHHHHHHHHHHHHTSSB----TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ChhhhHHhhccccccCCcc--ceEEe-ccC--hhhhhHHHHHHhhcCccCC-CCchhHHHHHHHHHHcCCCccccCCC
Confidence 4666777 43 112222 44544 678 9999999999999 55554 225567889999999999988 5555
No 25
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.40 E-value=0.032 Score=44.02 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=50.8
Q ss_pred HHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHH-hccccCchHHHH
Q 042328 5 SILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFA-AGDNYEIEYLRE 74 (156)
Q Consensus 5 ~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~-~A~~~~~~~l~~ 74 (156)
.+|.+++ +.|...... ....+-|=+ |+.|..+|.|+-||+++. +.-....++. -|.+|++..+.+
T Consensus 36 SffsaL~s~~~~s~~~~-~~~iFIDRD--PdlFaviLn~LRTg~L~~--~g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 36 SFFSALLSGRINSLKDE-SGAIFIDRD--PDLFAVILNLLRTGDLDA--SGVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred hHHHHHhcCccccccCC-CCceEecCC--chHHHHHHHHHhcCCCCC--ccCchhhhhhhhhhhcCcHHHHH
Confidence 5899999 777544331 333444678 999999999999999998 7666666666 999999999876
No 26
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=95.19 E-value=0.028 Score=43.10 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=99.2
Q ss_pred cCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHH
Q 042328 2 ARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHM 80 (156)
Q Consensus 2 a~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 80 (156)
..|+.|..+. ..-..+.. ..+.+-.++ ...+..+.+++|.+ +...........++.+...+.++..+..|...+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~~~d~~~~~ 121 (319)
T KOG1778|consen 47 PASPVFKKVLKQPCRKSLV--KGNKILGVP--CKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQPKADCDPIL 121 (319)
T ss_pred ccchHHHHHHhhhcchhhh--hcceeeccc--ccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCccccCCccc
Confidence 3456666665 44222223 566777788 89999999999976 665455677888999989999999999999988
Q ss_pred hh-hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHHhhCcc
Q 042328 81 PA-SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPH 134 (156)
Q Consensus 81 ~~-~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~ 134 (156)
.. .++..+++..+..+..+....|..++...+...+....+++.........+.
T Consensus 122 ~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~c~ 176 (319)
T KOG1778|consen 122 ECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPICK 176 (319)
T ss_pred cchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCccc
Confidence 77 5778899999999999999999999999999999999887666555444333
No 27
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=94.10 E-value=0.11 Score=31.44 Aligned_cols=47 Identities=13% Similarity=0.285 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhh---HHHHHHHHhhC
Q 042328 53 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSN---AIDFLRIGYNY 99 (156)
Q Consensus 53 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n---~~~~l~~a~~~ 99 (156)
+.+.+.+|+.+|++++++.|...|...+...+...+ +-.++.+...+
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~ 61 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDL 61 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TS
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCC
Confidence 566889999999999999999999998877665444 33444444433
No 28
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.65 E-value=0.13 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.4
Q ss_pred cCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHc
Q 042328 2 ARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLY 44 (156)
Q Consensus 2 a~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Y 44 (156)
..|..++.|+ +...+. ..|.+++++ ..++..+++|++
T Consensus 21 ~~S~~i~~ml~~~~~~~----~~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 21 KQSKTIKNMLEDLGDED----EPIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp TTSHHHHHHHHCTCCCG----TEEEETTS---HHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccc----cccccCccC--HHHHHHHHHHHH
Confidence 4689999999 432222 258999999 999999999986
No 29
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=1.2 Score=29.67 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=46.4
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHcc--CCCCcc---------------------chHHHHHHHHHhccccCchHHHHHHHH
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYT--GSLPRE---------------------KLQKHVVGLFAAGDNYEIEYLREVCLH 78 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt--~~~~~~---------------------~~~~~~~~ll~~A~~~~~~~l~~~c~~ 78 (156)
..+..+++. ..+|..+++|+-. ++...+ .+.+...++..+|+++.++.|...|..
T Consensus 39 ~p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCK 116 (158)
T COG5201 39 YPIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCK 116 (158)
T ss_pred CCCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHH
Confidence 446777888 9999999999843 222110 122556778889999999999999988
Q ss_pred HHhhhCChhh
Q 042328 79 HMPASFQSSN 88 (156)
Q Consensus 79 ~l~~~l~~~n 88 (156)
.+..-+...+
T Consensus 117 ivaemirgkS 126 (158)
T COG5201 117 IVAEMIRGKS 126 (158)
T ss_pred HHHHHHccCC
Confidence 8776655444
No 30
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=92.33 E-value=0.37 Score=38.84 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=47.1
Q ss_pred hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHHh-----hCcchHHHHHHHHh
Q 042328 83 SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESAS-----AFPHLCVLITRGCF 144 (156)
Q Consensus 83 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~-----~~~~l~~~~~~~~~ 144 (156)
.+.++|++.++..|..|....|.+.|.+|+.++... ..+|..|++ ..|+++..+++.+-
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q~A~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQRAKLFDEPSLISICLEVID 247 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 357899999999999999999999999999987654 456777765 57887777666543
No 31
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.93 E-value=0.23 Score=37.32 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=45.4
Q ss_pred CcCcHHHHHhhcCCCCCCC-CCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchH-HHHHHHHHhccccCchH
Q 042328 1 AARSSILKDCLDGKLLPIS-STDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQ-KHVVGLFAAGDNYEIEY 71 (156)
Q Consensus 1 aa~S~yF~~mf~~~~e~~~-~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~-~~~~~ll~~A~~~~~~~ 71 (156)
|+|+|+|+.+.+.-.+... -.-.+..-+++ .++|+.+|+|+|+|....++.. +++.-|-.+..-||.+.
T Consensus 150 aaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 150 AARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred HhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCch
Confidence 5799999998822222221 00234556799 9999999999999888763322 45556666666666653
No 32
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.68 E-value=0.78 Score=31.97 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=49.2
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHHhhh
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPAS 83 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 83 (156)
..-.+-|=+ |..|.-+|+|+-.|++.. +.-.-.++|.-|++|.++.|.....+.|...
T Consensus 64 tGAYlIDRD--P~~FgpvLNylRhgklvl--~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 64 TGAYLIDRD--PFYFGPVLNYLRHGKLVL--NKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred cCceEeccC--cchHHHHHHHHhcchhhh--hhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 345666778 999999999999999998 6555678999999999999999888887765
No 33
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=87.87 E-value=0.23 Score=37.98 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=37.7
Q ss_pred hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcch
Q 042328 83 SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSD 123 (156)
Q Consensus 83 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~ 123 (156)
.++++|++.++--+....++.|.+.|+.|+..|+.+++.++
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC
Confidence 47899999999999999999999999999999999998754
No 34
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.26 E-value=2.1 Score=33.77 Aligned_cols=68 Identities=15% Similarity=0.021 Sum_probs=45.6
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVC 76 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c 76 (156)
++||++|..-+ ..|...+ +|+-..+- +.+|..+++|+|-+.-.+ ..+..-.|+.+..+|+.+.+....
T Consensus 170 ~arSs~~~~k~v~~~~~~h----eI~~~~v~--~~~f~~flk~lyl~~na~--~~~qynallsi~~kF~~e~l~~~~ 238 (516)
T KOG0511|consen 170 EARSSNYFPKDVMFYVQGH----EIEAHRVI--LSAFSPFLKQLYLNTNAE--WKDQYNALLSIEVKFSKEKLSLEI 238 (516)
T ss_pred HhhhcccCchhhhhccccC----chhhhhhh--HhhhhHHHHHHHHhhhhh--hhhHHHHHHhhhhhccHHHhHHHH
Confidence 35677665555 4443332 24334566 899999999999753333 445568899999999998876543
No 35
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=85.33 E-value=2 Score=26.95 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=28.2
Q ss_pred ChhhHHHHHHHHhhCCcHHHHHHHHHHHHHh
Q 042328 85 QSSNAIDFLRIGYNYQLDELRDASLNFIVKN 115 (156)
Q Consensus 85 ~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 115 (156)
+.+++..++.+|..++.+.|.+.|..++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3788999999999999999999999999875
No 36
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=80.48 E-value=4.3 Score=25.04 Aligned_cols=60 Identities=23% Similarity=0.440 Sum_probs=40.5
Q ss_pred HHHHHhccccCchHHHHHHHHHHhhhCC------------hhhHHHHHHHHhh--CCcHHHHHHHHHHHHHhHH
Q 042328 58 VGLFAAGDNYEIEYLREVCLHHMPASFQ------------SSNAIDFLRIGYN--YQLDELRDASLNFIVKNVE 117 (156)
Q Consensus 58 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~------------~~n~~~~l~~a~~--~~~~~L~~~~~~~i~~~~~ 117 (156)
.+++..|+.|+.+.|...|.+++..+.. .+....++.--.. .+-.++.+.+.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 4688999999999999999999887632 2233333332222 2335688889999987765
No 37
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=79.74 E-value=1.6 Score=34.60 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhccccCchHHHHHHHHHHhhhC
Q 042328 53 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASF 84 (156)
Q Consensus 53 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 84 (156)
+++++...+++|.+||++.+++.|.+++..++
T Consensus 171 spkta~~yYea~ckYgle~vk~kc~ewl~~nl 202 (488)
T KOG4682|consen 171 SPKTACGYYEAACKYGLESVKKKCLEWLLNNL 202 (488)
T ss_pred ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77899999999999999999999999987763
No 38
>PHA02713 hypothetical protein; Provisional
Probab=70.85 E-value=11 Score=31.51 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.0
Q ss_pred hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhH
Q 042328 83 SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNV 116 (156)
Q Consensus 83 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 116 (156)
.++.+|+.+++..|..+..+.+.+.|.+|+.+++
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l 123 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT 123 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 4788999999999999999999999999998654
No 39
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=70.60 E-value=15 Score=22.17 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=35.7
Q ss_pred HHHHhccccCchHHHHHHHHHHhhhCC------------hhhHHHHHHHHhhC--CcHHHHHHHHHHHHHhH
Q 042328 59 GLFAAGDNYEIEYLREVCLHHMPASFQ------------SSNAIDFLRIGYNY--QLDELRDASLNFIVKNV 116 (156)
Q Consensus 59 ~ll~~A~~~~~~~l~~~c~~~l~~~l~------------~~n~~~~l~~a~~~--~~~~L~~~~~~~i~~~~ 116 (156)
+++..|+.|+.+.|...|.+++..+.. .+....++.--... +-..+.+.+.+|+..+.
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCH
Confidence 567788999999999999999877521 12222222211111 23456677777777654
No 40
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=66.02 E-value=21 Score=26.13 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=36.7
Q ss_pred HHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHH
Q 042328 33 GEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 78 (156)
Q Consensus 33 ~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~ 78 (156)
-..|+-+|.|+-+....+...-.++..|+.-|++|+++.+.....+
T Consensus 59 G~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 59 GFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred cchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhc
Confidence 7899999999998666663344678899999999999977765544
No 41
>PHA03098 kelch-like protein; Provisional
Probab=64.52 E-value=8.8 Score=31.48 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=30.2
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKNV 116 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 116 (156)
++.+|+.+++..|..+.++.|.+.|.+|+.+++
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l 105 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKII 105 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 678899999999999999999999999998654
No 42
>PHA02790 Kelch-like protein; Provisional
Probab=57.31 E-value=11 Score=30.71 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=34.5
Q ss_pred HHHHHHHhh---hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhH
Q 042328 74 EVCLHHMPA---SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNV 116 (156)
Q Consensus 74 ~~c~~~l~~---~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 116 (156)
+...+++-. .++.+|+-+++..|.....+.+.+.|.+|+.+++
T Consensus 75 ~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l 120 (480)
T PHA02790 75 TSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDF 120 (480)
T ss_pred HHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhC
Confidence 344445533 3678999999999999999999999999999653
No 43
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=53.40 E-value=39 Score=20.09 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=28.1
Q ss_pred hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHH
Q 042328 83 SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVE 117 (156)
Q Consensus 83 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 117 (156)
.++.+..++++..|.-.+...|.+.|.+.|...+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 55777889999999999999999999999986654
No 44
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=53.06 E-value=11 Score=28.96 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=36.6
Q ss_pred CCeee-CCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchH
Q 042328 22 DGMTT-MEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEY 71 (156)
Q Consensus 22 ~~i~l-~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~ 71 (156)
.+..+ +++. ..+|+.+|+|--+|.+.. .+.-.+.+|-++.|++.++.
T Consensus 139 gEyeVAdGi~--s~vFRAILdYYksG~iRC-P~~vSvpELrEACDYLlipF 186 (438)
T KOG3840|consen 139 DEFEVADGMT--SSCFRAILDYYQSGTMRC-PSSVSVSELREACDYLLVPF 186 (438)
T ss_pred Cceehhcchh--HHHHHHHHHHHhcCceeC-CCCCchHHHHhhcceEEeec
Confidence 44544 4699 999999999988888876 34457788999999987764
No 45
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=42.78 E-value=56 Score=27.45 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=30.1
Q ss_pred hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHh
Q 042328 83 SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKN 115 (156)
Q Consensus 83 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 115 (156)
.++.+|+..++..|..+++..+.+.|.+|+.++
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 367789999999999999999999999999964
No 46
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=37.95 E-value=1.2e+02 Score=20.23 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHHHHHHHhhCCcHHHHHHH
Q 042328 29 VAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDAS 108 (156)
Q Consensus 29 ~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~ 108 (156)
++ |..|..+++.+..|.+.. ..+.. .....+...-++..++.-..+....+-.++...|
T Consensus 40 i~--~~~l~~li~l~~~~~Is~----~~ak~---------------ll~~~~~~~~~~~~ii~~~~l~~i~d~~el~~~v 98 (148)
T PF02637_consen 40 IS--PEHLAELINLLEDGKISK----KSAKE---------------LLRELLENGKSPEEIIEENGLWQISDEEELEALV 98 (148)
T ss_dssp ST--HHHHHHHHHHHHTTSSGH----HHHHH---------------HHHHHHHHTS-HHHHHHHTT---B--CCHHHHHH
T ss_pred CC--HHHHHHHHHHHHcCCCCH----HHHHH---------------HHHHHHHcCCCHHHHHHHcCCCcCCCHHHHHHHH
Confidence 66 788888888777776654 12222 2222222334455555555555555557788888
Q ss_pred HHHHHHhHHHH
Q 042328 109 LNFIVKNVEEL 119 (156)
Q Consensus 109 ~~~i~~~~~~v 119 (156)
.+.+..|-..+
T Consensus 99 ~~vi~~n~~~v 109 (148)
T PF02637_consen 99 EEVIAENPKEV 109 (148)
T ss_dssp HHHHHC-HHHH
T ss_pred HHHHHHCHHHH
Confidence 88888775555
No 47
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=37.70 E-value=1.9e+02 Score=22.43 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHHHHhHHHHhcchhHHHHHhhCcchHHHHHHHHhcccccch
Q 042328 99 YQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMGANRRA 151 (156)
Q Consensus 99 ~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~ 151 (156)
.+..+++..+.+.|.+.+..+ .+.|.++. .+|+.+.++++.-.++.+..|
T Consensus 268 ~~~~~lK~~la~~i~~~l~pi--re~~~~~~-~~~~~~~~il~~G~~~a~~~a 317 (333)
T PRK00927 268 KGYGDFKKDLAEAVVEFLAPI--RERYEELL-ADPAYLDEILAEGAEKARAVA 317 (333)
T ss_pred CChHHHHHHHHHHHHHHHHHH--HHHHHHHH-cCHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777766 44555555 477788888887776665554
No 48
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=31.41 E-value=1.5e+02 Score=19.36 Aligned_cols=73 Identities=10% Similarity=0.025 Sum_probs=46.5
Q ss_pred eeCCCCCcHHHHHHHhhhHccCCCC---ccchHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHHHHHHHhhC
Q 042328 25 TTMEVAEEGEVLKALVDFLYTGSLP---REKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNY 99 (156)
Q Consensus 25 ~l~~~~~~~~~~~~ll~~~Yt~~~~---~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~a~~~ 99 (156)
.+.+++ |+..+.+.+|.|.+-.. ++........+-.++-.=+.+.++.+...-+...++++-+..++..+..|
T Consensus 27 ~~~~~~--p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y 102 (123)
T TIGR02425 27 ATTDFD--QPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIY 102 (123)
T ss_pred cccccC--HHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 456788 99888888998862221 21133334444333444355677777777777778888887777766665
No 49
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=27.59 E-value=3e+02 Score=21.48 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=54.4
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHccCCCCc------cchHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHHHHHH
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYTGSLPR------EKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRI 95 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~ 95 (156)
+.|.|.|-+ .++.+.+.+ .||+...+ .....++..++..-.. .-..+.+...++-
T Consensus 203 ~~I~L~D~p--e~I~kKI~~-A~td~~~~~~~~~~~~~~~~l~~~~~~f~~-~~~~~e~l~~~y~--------------- 263 (333)
T PRK12282 203 NAIYLSDDA--DTIKKKVMS-MYTDPNHIRVEDPGKVEGNVVFTYLDAFDP-DKAEVAELKAHYQ--------------- 263 (333)
T ss_pred CeeeeeCCH--HHHHHHHHh-CcCCCCCccCCCCCCCCcChHHHHHHHhCC-CCchHHHHHHHHh---------------
Confidence 568888766 677777777 88864221 1122344444444200 0001111111110
Q ss_pred HhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHHhhCcchHHHHHHHHhcccccch
Q 042328 96 GYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCFMGANRRA 151 (156)
Q Consensus 96 a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~ 151 (156)
....+..+++..+.+.|.+.+..+ .+.+.++. .+|+.+.++++.-.++.+..|
T Consensus 264 ~g~~~~~dlK~~lae~i~~~l~pi--rer~~~~~-~~~~~~~~vl~~G~~ka~~~A 316 (333)
T PRK12282 264 RGGLGDVKCKRYLEEVLQELLAPI--RERRAEFA-KDPGYVLEILKAGSEKAREVA 316 (333)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHH-cCHHHHHHHHHHHHHHHHHHH
Confidence 123455567777777777666655 23333433 466777777776665554443
No 50
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.94 E-value=1.1e+02 Score=26.75 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=36.0
Q ss_pred CCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHHHHHHHhhCCcHHHHHH
Q 042328 28 EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDA 107 (156)
Q Consensus 28 ~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~ 107 (156)
|+++-..+...+|.|+-|.+..+ .++.+..+-.+|.+|-.+- ..=++-.+.++.+|..|..++..-+
T Consensus 398 D~~Nak~IV~elLqYL~tAd~si--reeivlKvAILaEKyAtDy-----------~WyVdviLqLiriagd~vsdeVW~R 464 (938)
T KOG1077|consen 398 DVSNAKQIVAELLQYLETADYSI--REEIVLKVAILAEKYATDY-----------SWYVDVILQLIRIAGDYVSDEVWYR 464 (938)
T ss_pred chhhHHHHHHHHHHHHhhcchHH--HHHHHHHHHHHHHHhcCCc-----------chhHHHHHHHHHHhcccccHHHHHH
Confidence 44433466677777776655555 6666666666666663321 1112334455566665555444333
No 51
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=22.15 E-value=4.6e+02 Score=21.74 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=36.1
Q ss_pred CCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHHHHHHHhhCCcHHHHHHH
Q 042328 29 VAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDAS 108 (156)
Q Consensus 29 ~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~ 108 (156)
++ |..+..++..+..|.+.. ..+. ......+....++...+.-..+....+..++...|
T Consensus 369 l~--p~~l~~Li~lv~~g~Is~----~~ak---------------~vl~~~~~~~~~~~~ii~~~gl~~isd~~~l~~iv 427 (478)
T TIGR00133 369 LK--PSDLAELIKLIKEGKISG----KSAK---------------QLIEEMLENGGDPSKLIEELGLEQISDEKELIKII 427 (478)
T ss_pred CC--HHHHHHHHHHHHcCCCcH----HHHH---------------HHHHHHHhcCCCHHHHHHhcCCcccCCHHHHHHHH
Confidence 56 777777777776666654 1112 22222222223344444443333333444677777
Q ss_pred HHHHHHhHHHHh
Q 042328 109 LNFIVKNVEELV 120 (156)
Q Consensus 109 ~~~i~~~~~~v~ 120 (156)
.+.+..|-..+.
T Consensus 428 ~evl~~np~~v~ 439 (478)
T TIGR00133 428 EEVIKENPKEVE 439 (478)
T ss_pred HHHHHHCHHHHH
Confidence 777776665553
Done!