Query 042328
Match_columns 156
No_of_seqs 116 out of 1189
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3htm_A Speckle-type POZ protei 99.9 1.7E-26 5.7E-31 160.4 9.7 117 1-123 54-171 (172)
2 3hve_A Gigaxonin; ubiquitin, c 99.9 1.7E-26 5.7E-31 169.9 10.0 123 1-129 51-176 (256)
3 3i3n_A Kelch-like protein 11; 99.9 2E-26 6.8E-31 171.5 6.2 123 1-129 55-184 (279)
4 3hqi_A Speckle-type POZ protei 99.9 3.9E-25 1.3E-29 166.8 10.4 118 1-124 194-312 (312)
5 4eoz_A Speckle-type POZ protei 99.9 3.6E-23 1.2E-27 139.7 1.4 100 1-106 45-145 (145)
6 2vkp_A BTB/POZ domain-containi 99.8 5E-19 1.7E-23 114.0 5.3 77 1-84 32-109 (109)
7 2if5_A Zinc finger and BTB dom 99.8 7.5E-19 2.6E-23 115.1 5.5 74 1-80 45-119 (120)
8 1r29_A B-cell lymphoma 6 prote 99.7 2.5E-18 8.7E-23 113.6 5.5 76 1-83 49-126 (127)
9 2z8h_A Transcription regulator 99.7 2.4E-18 8.2E-23 115.4 3.7 80 1-88 56-137 (138)
10 2ppi_A Gigaxonin; BTB domain, 99.7 3.3E-18 1.1E-22 115.5 4.1 74 1-80 67-143 (144)
11 3b84_A Zinc finger and BTB dom 99.7 5.9E-18 2E-22 110.8 3.8 73 1-83 44-117 (119)
12 2yy9_A Zinc finger and BTB dom 99.7 7.4E-18 2.5E-22 112.6 2.9 77 1-87 45-122 (135)
13 1buo_A POZ domain, protein (pr 99.7 3.5E-17 1.2E-21 107.3 5.7 72 1-83 48-120 (121)
14 2vpk_A Myoneurin; transcriptio 99.7 3.3E-17 1.1E-21 106.6 5.2 71 1-81 42-115 (116)
15 2q81_A MIZ-1 protein; BTB/POZ 99.6 1.2E-16 4.2E-21 104.4 3.9 70 1-81 47-117 (119)
16 3ohu_A Transcription regulator 99.6 1.7E-17 5.8E-22 109.4 -1.9 72 1-80 52-125 (125)
17 3ga1_A Nucleus accumbens-assoc 99.6 3.9E-17 1.3E-21 108.2 -0.3 73 1-83 53-127 (129)
18 2ihc_A Transcription regulator 99.6 2.3E-17 8E-22 108.6 -2.0 73 1-81 49-123 (124)
19 3fkc_A Transcriptional regulat 99.5 1.8E-14 6.1E-19 93.7 4.8 63 1-74 51-115 (116)
20 3m5b_A Zinc finger and BTB dom 99.5 1.8E-14 6.2E-19 94.1 3.4 68 1-82 50-117 (119)
21 2ast_A S-phase kinase-associat 99.4 3.6E-13 1.2E-17 92.2 7.1 84 1-90 20-132 (159)
22 4ajy_C Transcription elongatio 99.1 1.3E-10 4.6E-15 73.0 4.4 62 1-68 21-96 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 6.7E-10 2.3E-14 74.4 7.1 81 1-91 21-128 (141)
24 2p1m_A SKP1-like protein 1A; F 98.9 1E-09 3.4E-14 75.0 2.8 93 1-100 23-144 (160)
25 2eqx_A Kelch repeat and BTB do 98.7 1.9E-08 6.4E-13 63.9 5.3 51 80-130 4-54 (105)
26 3v7d_A Suppressor of kinetocho 98.3 2.6E-06 8.8E-11 58.5 7.3 84 1-88 26-137 (169)
27 1hv2_A Elongin C, ELC1; protei 98.2 1.5E-06 5.2E-11 54.5 4.1 64 1-69 23-99 (99)
28 2fnj_C Transcription elongatio 98.1 1E-06 3.4E-11 55.0 2.3 65 1-69 20-96 (96)
29 1vcb_B Protein (elongin C); tu 97.7 1.5E-05 5.2E-10 51.0 2.7 65 1-69 36-112 (112)
30 3drz_A BTB/POZ domain-containi 97.7 5.4E-05 1.9E-09 47.9 5.0 73 5-82 30-106 (107)
31 3drx_A BTB/POZ domain-containi 96.0 0.0043 1.5E-07 43.4 2.9 74 6-83 37-113 (202)
32 2vkp_A BTB/POZ domain-containi 92.9 0.13 4.4E-06 31.7 4.0 32 84-115 77-108 (109)
33 1s1g_A Potassium voltage-gated 91.8 0.12 4.1E-06 33.2 2.8 47 22-72 53-99 (124)
34 2eqx_A Kelch repeat and BTB do 91.6 0.18 6E-06 31.2 3.3 64 52-116 8-83 (105)
35 1t1d_A Protein (potassium chan 89.8 0.25 8.7E-06 30.5 2.8 48 22-73 42-90 (100)
36 1r29_A B-cell lymphoma 6 prote 89.7 1.1 3.6E-05 28.3 5.9 32 84-115 95-126 (127)
37 2nz0_B Potassium voltage-gated 89.1 0.18 6.1E-06 33.2 1.9 46 23-72 76-121 (140)
38 2yy9_A Zinc finger and BTB dom 88.4 0.53 1.8E-05 30.2 3.8 36 84-119 87-122 (135)
39 2vpk_A Myoneurin; transcriptio 88.0 1.3 4.4E-05 27.4 5.3 30 84-113 86-115 (116)
40 3b84_A Zinc finger and BTB dom 87.4 0.92 3.1E-05 28.3 4.4 32 84-115 86-117 (119)
41 1nn7_A Potassium channel KV4.2 87.3 0.15 5.1E-06 31.7 0.6 42 28-72 45-86 (105)
42 2q81_A MIZ-1 protein; BTB/POZ 87.0 0.84 2.9E-05 28.5 4.0 30 84-113 88-117 (119)
43 1buo_A POZ domain, protein (pr 86.5 2.4 8E-05 26.4 6.0 32 84-115 89-120 (121)
44 2if5_A Zinc finger and BTB dom 85.0 1.4 4.8E-05 27.4 4.3 29 84-112 91-119 (120)
45 2z8h_A Transcription regulator 84.4 0.28 9.6E-06 31.7 0.8 34 84-117 101-134 (138)
46 3kvt_A Potassium channel prote 84.4 0.24 8.4E-06 31.3 0.5 48 22-73 46-93 (115)
47 3htm_A Speckle-type POZ protei 82.1 3 0.0001 27.4 5.3 33 84-116 100-132 (172)
48 2ppi_A Gigaxonin; BTB domain, 78.5 1.2 4E-05 29.0 2.2 29 84-112 115-143 (144)
49 3m5b_A Zinc finger and BTB dom 77.9 2.1 7.1E-05 26.8 3.2 31 84-114 87-117 (119)
50 3hqi_A Speckle-type POZ protei 77.2 1.4 4.9E-05 32.2 2.6 33 53-85 273-305 (312)
51 4eoz_A Speckle-type POZ protei 75.2 1.6 5.5E-05 27.9 2.2 34 84-117 91-124 (145)
52 3ga1_A Nucleus accumbens-assoc 72.0 1.5 5.1E-05 27.7 1.4 33 83-115 95-127 (129)
53 2ast_A S-phase kinase-associat 70.8 7.7 0.00026 25.6 4.8 35 83-117 93-127 (159)
54 3hve_A Gigaxonin; ubiquitin, c 69.9 8.4 0.00029 27.2 5.1 33 84-116 99-131 (256)
55 3i3n_A Kelch-like protein 11; 68.6 8.7 0.0003 27.5 5.0 32 84-115 107-138 (279)
56 1fs1_B SKP1, cyclin A/CDK2-ass 63.3 18 0.00061 23.3 5.3 35 83-117 88-122 (141)
57 2plx_B Peptide inhibitor; heli 62.7 8.8 0.0003 16.7 3.0 21 91-111 3-23 (26)
58 2wx4_A DCP1, decapping protein 51.7 19 0.00064 18.6 3.0 30 123-152 16-45 (46)
59 3b0b_B CENP-S, centromere prot 47.6 47 0.0016 20.5 5.7 84 55-139 11-94 (107)
60 2p1m_A SKP1-like protein 1A; F 45.8 14 0.00049 24.3 2.6 34 84-117 93-126 (160)
61 2r9r_B Paddle chimera voltage 43.9 15 0.00051 29.2 2.8 48 22-73 93-141 (514)
62 2wx3_A MRNA-decapping enzyme 1 42.7 26 0.00089 18.5 2.7 29 123-151 18-46 (51)
63 2cmy_B Beta trypsin, veronica 41.3 22 0.00074 16.4 2.0 21 91-111 8-28 (34)
64 3v7d_A Suppressor of kinetocho 25.2 1.5E+02 0.0051 19.5 5.3 32 84-115 101-132 (169)
65 1of9_A Pore-forming peptide am 23.0 1.1E+02 0.0037 17.1 4.1 49 72-121 11-59 (77)
66 3mdp_A Cyclic nucleotide-bindi 22.1 34 0.0012 20.8 1.2 30 121-150 111-140 (142)
67 1l9l_A Granulysin; saposin fol 21.5 1.2E+02 0.0041 17.0 5.8 47 73-120 11-57 (74)
68 4dra_A Centromere protein S; D 20.1 1.7E+02 0.0057 18.2 4.2 87 59-147 23-109 (113)
69 1vp6_A CNBD, cyclic-nucleotide 20.1 57 0.0019 19.7 2.0 30 121-150 106-135 (138)
No 1
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=160.35 Aligned_cols=117 Identities=26% Similarity=0.419 Sum_probs=107.0
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| ++++|+.. ..|.+++++ +.+|+.+|+|+|+|.+.+ +.+++.+++.+|++|+++.|+..|+++
T Consensus 54 ~~~S~~F~~~f~~~~~e~~~--~~i~l~~~~--~~~f~~~l~~~Yt~~~~~--~~~~~~~ll~~A~~~~~~~l~~~c~~~ 127 (172)
T 3htm_A 54 AARSPVFSAMFEHEMEESKK--NRVEINDVE--PEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERLKVMCEDA 127 (172)
T ss_dssp HHHCHHHHHHHHSCCCGGGT--TEEEECSSC--HHHHHHHHHHHHHSCCTT--GGGTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCHHHHHHHccCccccCC--CeEEecCCC--HHHHHHHHHHHhCCCCCC--cHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 47899999999 99999988 899999999 999999999999999998 889999999999999999999999999
Q ss_pred HhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcch
Q 042328 80 MPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSD 123 (156)
Q Consensus 80 l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~ 123 (156)
|...++.+||+.++.+|..|++++|.+.|.+||.+|+.++..++
T Consensus 128 l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~ 171 (172)
T 3htm_A 128 LCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETS 171 (172)
T ss_dssp HHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------
T ss_pred HHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998765
No 2
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.94 E-value=1.7e-26 Score=169.91 Aligned_cols=123 Identities=13% Similarity=0.271 Sum_probs=110.5
Q ss_pred CcCcHHHHHhh-cCCC--CCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHH
Q 042328 1 AARSSILKDCL-DGKL--LPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCL 77 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~--e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 77 (156)
|++|+||++|| +++. |+.. ..|.+++++ +.+|..+++|+|||.+.+ +.+++.+++.+|++|+++.|+..|+
T Consensus 51 aa~S~yF~~mf~~~~~~~e~~~--~~i~l~~v~--~~~f~~ll~~~Yt~~~~i--~~~~v~~ll~~A~~l~i~~l~~~c~ 124 (256)
T 3hve_A 51 AAASPYIRTKLNYNPPKDDGST--YKIELEGIS--VMVMREILDYIFSGQIRL--NEDTIQDVVQAADLLLLTDLKTLCC 124 (256)
T ss_dssp HTTCHHHHHTC-------------CEEECSSCC--HHHHHHHHHHHHHSCCCC--C-CCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHcCHHHHHHhCCCCCcccCCC--CeEEeCCCC--HHHHHHHHhhccCCCCcc--cHhHHHHHHHHHHHHChHHHHHHHH
Confidence 57999999999 8887 5666 889999999 999999999999999998 8899999999999999999999999
Q ss_pred HHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHH
Q 042328 78 HHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESA 129 (156)
Q Consensus 78 ~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~ 129 (156)
++|.+.++++||+.++.+|..|++.+|.+.|.+||.+||.++..+++|.+|+
T Consensus 125 ~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~ 176 (256)
T 3hve_A 125 EFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELS 176 (256)
T ss_dssp HHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSC
T ss_pred HHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCC
Confidence 9999999999999999999999999999999999999999999999998874
No 3
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.93 E-value=2e-26 Score=171.48 Aligned_cols=123 Identities=16% Similarity=0.279 Sum_probs=110.6
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeC------CCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTM------EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLR 73 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~------~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~ 73 (156)
|++|+||++|| ++|+|+.. ..|.++ +++ +.+|..+++|+|||.+.+ +.+++.+++.+|++|+++.|+
T Consensus 55 aa~S~yF~~mf~~~~~e~~~--~~i~l~~~~~~~~v~--~~~f~~ll~~~Ytg~~~i--~~~~v~~ll~~A~~l~i~~L~ 128 (279)
T 3i3n_A 55 AAATEYFTPLLSGQFSESRS--GRVEMRKWSSEPGPE--PDTVEAVIEYMYTGRIRV--STGSVHEVLELADRFLLIRLK 128 (279)
T ss_dssp HHHCTTSGGGCCC----------EEECCCCSSTTCSC--HHHHHHHHHHHHHSEEEE--ETTTHHHHHHHHHHTTCHHHH
T ss_pred HHcCHHHHHHhcCCCccccC--CeEEeccccccCCCC--HHHHHHHHHhhCcCCccc--CHHHHHHHHHHHHHHCcHHHH
Confidence 47899999999 99999998 899998 889 999999999999999998 889999999999999999999
Q ss_pred HHHHHHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHH
Q 042328 74 EVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESA 129 (156)
Q Consensus 74 ~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~ 129 (156)
..|+++|.+.++++||+.++.+|..|++.+|.+.|.+||.+||.++..+++|.+|+
T Consensus 129 ~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~ 184 (279)
T 3i3n_A 129 EFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLP 184 (279)
T ss_dssp HHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSC
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCC
Confidence 99999999999999999999999999999999999999999999999999998864
No 4
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=3.9e-25 Score=166.77 Aligned_cols=118 Identities=25% Similarity=0.413 Sum_probs=102.4
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| ++++|+.. .+|.+++++ +.+|+.+|+|+|||.+++ +.+++.+++.+|++|+++.|+..|+++
T Consensus 194 aa~S~~F~~~f~~~~~e~~~--~~i~l~~~~--~~~f~~~L~~iYt~~~~~--~~~~~~~ll~~A~~~~~~~l~~~c~~~ 267 (312)
T 3hqi_A 194 AARSPVFSAMFEHEMEESKK--NRVEINDVE--PEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERLKVMCEDA 267 (312)
T ss_dssp HHHCHHHHHHTTC-----CC--SEEEECSSC--HHHHHHHHHHHHHSCCTT--HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCHHHHHHhccCccccCC--ceEEecCCC--HHHHHHHHHhhcCCCCCC--hHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 57899999999 99999988 999999999 999999999999999998 889999999999999999999999999
Q ss_pred HhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchh
Q 042328 80 MPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDK 124 (156)
Q Consensus 80 l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~ 124 (156)
|...++.+|+..++.+|..|++.+|.+.|.+||.+|+.++..+++
T Consensus 268 l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 268 LCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999987653
No 5
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.86 E-value=3.6e-23 Score=139.72 Aligned_cols=100 Identities=28% Similarity=0.433 Sum_probs=69.8
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| ++++|+.. ..|.+++++ +.+|+.+|+|+|+|.+.+ +.+++.+++.+|++|+++.|+..|+++
T Consensus 45 ~~~S~~F~~~f~~~~~e~~~--~~i~l~~~~--~~~~~~~l~~~Y~~~~~~--~~~~~~~ll~~A~~~~~~~l~~~c~~~ 118 (145)
T 4eoz_A 45 AARSPVFSAMFEHEMEESKK--NRVEINDVE--PEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERLKVMCEDA 118 (145)
T ss_dssp HHHCHHHHHHHHSSSHHHHH--TEEEECSSC--HHHHHHHHHHHHHSCCTT--GGGTHHHHHHHHHHTTCHHHHHHHHCC
T ss_pred HHcCHHHHHHHcCCCcCCCC--ceEEecCCC--HHHHHHHHHhhccCccCC--cHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 47899999999 99998888 899999999 999999999999999998 889999999999999999999999999
Q ss_pred HhhhCChhhHHHHHHHHhhCCcHHHHH
Q 042328 80 MPASFQSSNAIDFLRIGYNYQLDELRD 106 (156)
Q Consensus 80 l~~~l~~~n~~~~l~~a~~~~~~~L~~ 106 (156)
|.+.++.+||+.++.+|..|++++|++
T Consensus 119 l~~~l~~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 119 LCSNLSVENAAEILILADLHSADQLKT 145 (145)
T ss_dssp ---------------------------
T ss_pred HHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence 999999999999999999999988863
No 6
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.76 E-value=5e-19 Score=113.95 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=66.3
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| ++|+|+. ..|.+++++ +.+|..+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|+++
T Consensus 32 a~~S~~F~~~f~~~~~e~~---~~i~l~~~~--~~~f~~~l~~iYt~~~~~--~~~~~~~ll~~A~~~~~~~L~~~c~~~ 104 (109)
T 2vkp_A 32 AVGSSVFYAMFYGDLAEVK---SEIHIPDVE--PAAFLILLKYMYSDEIDL--EADTVLATLYAAKKYIVPALAKACVNF 104 (109)
T ss_dssp HHHCHHHHHHHC------C---CEEEETTSC--HHHHHHHHHHHHHCCCCC--CTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCHHHHHHhcCCcccCC---CeEEeCCCC--HHHHHHHHHHHcCCCccC--CHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 47899999999 9988875 579999999 999999999999999998 889999999999999999999999999
Q ss_pred HhhhC
Q 042328 80 MPASF 84 (156)
Q Consensus 80 l~~~l 84 (156)
|.+++
T Consensus 105 l~~~l 109 (109)
T 2vkp_A 105 LETSL 109 (109)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 98764
No 7
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.75 E-value=7.5e-19 Score=115.07 Aligned_cols=74 Identities=28% Similarity=0.368 Sum_probs=65.9
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| ++++|+.. ..|.+++++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|+++
T Consensus 45 aa~S~~F~~~f~~~~~e~~~--~~i~l~~~~--~~~f~~ll~~~Yt~~~~~--~~~~~~~ll~~A~~~~i~~L~~~C~~~ 118 (120)
T 2if5_A 45 AACSQYFKKLFTSGAVVDQQ--NVYEIDFVS--AEALTALMDFAYTATLTV--STANVGDILSAARLLEIPAVSHVCADL 118 (120)
T ss_dssp HHHCHHHHHHHHC-----CC--SEEECCSSC--HHHHHHHHHHHHHSCCCC--CGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCHHHHHHhcCCccccCC--ceEEeCCCC--HHHHHHHHHHHcCCCCcc--CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 47899999999 99999988 899999999 999999999999999998 889999999999999999999999998
Q ss_pred H
Q 042328 80 M 80 (156)
Q Consensus 80 l 80 (156)
|
T Consensus 119 L 119 (120)
T 2if5_A 119 L 119 (120)
T ss_dssp H
T ss_pred h
Confidence 6
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.73 E-value=2.5e-18 Score=113.63 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=70.9
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeee-CCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTT-MEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 78 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l-~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~ 78 (156)
|++|+||++|| +++.| .. ..|.+ ++++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|++
T Consensus 49 aa~S~~F~~~f~~~~~e-~~--~~i~l~~~~~--~~~f~~ll~~~Ytg~~~~--~~~~~~~ll~~A~~~~i~~L~~~c~~ 121 (127)
T 1r29_A 49 MACSGLFYSIFTDQLKR-NL--SVINLDPEIN--PEGFNILLDFMYTSRLNL--REGNIMAVMATAMYLQMEHVVDTCRK 121 (127)
T ss_dssp HHHCHHHHHHHTSTTTT-TC--SEEECCTTSC--HHHHHHHHHHHHHSCCCC--CTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCHHHHHHhcCCccC-CC--CEEEeCCCCC--HHHHHHHHHHHcCCCcCc--CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57899999999 99998 56 88999 9999 999999999999999998 88999999999999999999999999
Q ss_pred HHhhh
Q 042328 79 HMPAS 83 (156)
Q Consensus 79 ~l~~~ 83 (156)
+|.++
T Consensus 122 ~l~~~ 126 (127)
T 1r29_A 122 FIKAS 126 (127)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 98764
No 9
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.72 E-value=2.4e-18 Score=115.39 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=73.6
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeC-CCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTM-EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 78 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~-~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~ 78 (156)
|++|+||++|| +++.+. ..|.++ +++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|++
T Consensus 56 aa~S~yF~~~f~~~~~e~----~~i~l~~~v~--~~~~~~lL~~~Ytg~~~i--~~~~v~~ll~~A~~~~i~~L~~~C~~ 127 (138)
T 2z8h_A 56 AACSSYFHSRIVGQTDAE----LTVTLPEEVT--VKGFEPLIQFAYTAKLIL--SKDNVDEVCRCVEFLSVHNIEESCFQ 127 (138)
T ss_dssp HHHCHHHHHHHTTCCCTT----EEEECCTTSC--HHHHHHHHHHHHHSCCCC--CTTTHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHcCHHHHHHHhcCCCCC----ceEEeCCCCC--HHHHHHHHHHhcCCCccc--CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57899999999 888764 568885 899 999999999999999998 88999999999999999999999999
Q ss_pred HHhhhCChhh
Q 042328 79 HMPASFQSSN 88 (156)
Q Consensus 79 ~l~~~l~~~n 88 (156)
+|...++.+|
T Consensus 128 ~l~~~l~~sn 137 (138)
T 2z8h_A 128 FLKFKFLDST 137 (138)
T ss_dssp HTTCCCSCCC
T ss_pred HHHHhccccc
Confidence 9999998776
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.71 E-value=3.3e-18 Score=115.54 Aligned_cols=74 Identities=15% Similarity=0.279 Sum_probs=66.6
Q ss_pred CcCcHHHHHhh-cCCCC--CCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLL--PISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCL 77 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e--~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 77 (156)
|++|+||++|| +++++ +.. ..|.+++++ +.+|..+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|+
T Consensus 67 aa~S~yF~~mf~~~~~e~e~~~--~~I~l~~v~--~~~f~~lL~fiYtg~~~i--~~~~v~~ll~~A~~l~i~~L~~~C~ 140 (144)
T 2ppi_A 67 AAASPYIRTKLNYNPPKDDGST--YKIELEGIS--VMVMREILDYIFSGQIRL--NEDTIQDVVQAADLLLLTDLKTLCC 140 (144)
T ss_dssp HHHCHHHHHHHHHCC-----CC--CEEECCSSC--HHHHHHHHHHHTTSCCCC--CTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcCHHHHHHHcCCCccccCCC--cEEEeCCCC--HHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 57899999999 88876 455 889999999 999999999999999998 8899999999999999999999999
Q ss_pred HHH
Q 042328 78 HHM 80 (156)
Q Consensus 78 ~~l 80 (156)
++|
T Consensus 141 ~~L 143 (144)
T 2ppi_A 141 EFL 143 (144)
T ss_dssp TTC
T ss_pred HHh
Confidence 876
No 11
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.70 E-value=5.9e-18 Score=110.75 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=65.5
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| +++ . ..|.+++++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|+++
T Consensus 44 aa~S~yF~~~f~~~~----~--~~i~l~~~~--~~~f~~ll~~iYtg~~~~--~~~~v~~ll~~A~~~~i~~L~~~C~~~ 113 (119)
T 3b84_A 44 ACCSHFFQSLYGDGS----G--GSVVLPAGF--AEIFGLLLDFFYTGHLAL--TSGNRDQVLLAARELRVPEAVELCQSF 113 (119)
T ss_dssp HHHCHHHHHHHTTTT----C--CCEEECGGG--HHHHHHHHHHHHHSCCCC--CTTTHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred hhcCHHHHHHHCCCC----C--CeEEeCCCC--HHHHHHHHHHHcCCCCcc--CHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 57899999999 765 4 779999999 999999999999999998 888999999999999999999999998
Q ss_pred Hhhh
Q 042328 80 MPAS 83 (156)
Q Consensus 80 l~~~ 83 (156)
|.+.
T Consensus 114 l~~~ 117 (119)
T 3b84_A 114 KPKT 117 (119)
T ss_dssp C---
T ss_pred HHHc
Confidence 8654
No 12
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.69 E-value=7.4e-18 Score=112.62 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=64.3
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| +++ . ..|.+++++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|+++
T Consensus 45 aa~S~yF~~mf~~~~----~--~~i~l~~~~--~~~f~~lL~fiYtg~~~i--~~~~v~~ll~~A~~l~i~~L~~~C~~~ 114 (135)
T 2yy9_A 45 ACCSHFFQRIYGDGT----G--GSVVLPAGF--AEIFGLLLDFFYTGHLAL--TSGNRDQVLLAAKELRVPEAVELCQSF 114 (135)
T ss_dssp HHHCHHHHHTCC----------CCEEECGGG--HHHHHHHHHHHHHSCCCC--CTTTHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHhCHHHHHHHcCCC----C--CeEEeCCCC--HHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 57899999999 766 4 779999999 999999999999999998 889999999999999999999999999
Q ss_pred HhhhCChh
Q 042328 80 MPASFQSS 87 (156)
Q Consensus 80 l~~~l~~~ 87 (156)
|.+.+...
T Consensus 115 l~~~l~~~ 122 (135)
T 2yy9_A 115 QPQTSVGQ 122 (135)
T ss_dssp CC------
T ss_pred HHHhccCC
Confidence 98886543
No 13
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.68 E-value=3.5e-17 Score=107.30 Aligned_cols=72 Identities=24% Similarity=0.381 Sum_probs=66.6
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| ++ . ..|.+++++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|+++
T Consensus 48 aa~S~yF~~~f~~~-----~--~~i~l~~~~--~~~f~~ll~~~Ytg~~~~--~~~~~~~ll~~A~~~~i~~L~~~c~~~ 116 (121)
T 1buo_A 48 ACTSKMFEILFHRN-----S--QHYTLDFLS--PKTFQQILEYAYTATLQA--KAEDLDDLLYAAEILEIEYLEEQCLKM 116 (121)
T ss_dssp HHHCHHHHHHTTSC-----C--SEEEECSSC--HHHHHHHHHHHHHSCCCC--CGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhcCHHHHHHHcCC-----C--cEEEeCCCC--HHHHHHHHHhhcCCCcCC--CHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 57899999999 63 4 679999999 999999999999999998 889999999999999999999999999
Q ss_pred Hhhh
Q 042328 80 MPAS 83 (156)
Q Consensus 80 l~~~ 83 (156)
|.+.
T Consensus 117 l~~~ 120 (121)
T 1buo_A 117 LETI 120 (121)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 14
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=106.64 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=64.7
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeC--CCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTM--EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCL 77 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~--~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 77 (156)
|++|+||++|| ++ .. ..|.++ +++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|+
T Consensus 42 aa~S~yF~~~f~~~----~~--~~i~l~~~~~~--~~~f~~ll~~~Yt~~~~~--~~~~v~~ll~~A~~~~i~~L~~~C~ 111 (116)
T 2vpk_A 42 ASFSEYFGAIYRST----SE--NNVFLDQSQVK--ADGFQKLLEFIYTGTLNL--DSWNVKEIHQAADYLKVEEVVTKCK 111 (116)
T ss_dssp HHHCHHHHHHHTTC----CC--SCEECCTTTCC--HHHHHHHHHHHHHSCCCC--CTTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcCHHHHHHHcCC----CC--CeEEeecCCCC--HHHHHHHHHHHcCCCccc--CHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57899999999 65 24 667787 999 999999999999999998 8899999999999999999999999
Q ss_pred HHHh
Q 042328 78 HHMP 81 (156)
Q Consensus 78 ~~l~ 81 (156)
++|.
T Consensus 112 ~~l~ 115 (116)
T 2vpk_A 112 IKME 115 (116)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 9885
No 15
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.63 E-value=1.2e-16 Score=104.44 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=64.3
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| ++ . .+|.+++++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|+++
T Consensus 47 aa~S~yF~~~f~~~-----~--~~i~l~~~~--~~~f~~ll~~~Ytg~~~i--~~~~~~~ll~~A~~l~i~~L~~~C~~~ 115 (119)
T 2q81_A 47 AACSEYFKMLFVDQ-----K--DVVHLDISN--AAGLGQVLEFMYTAKLSL--SPENVDDVLAVATFLQMQDIITACHAL 115 (119)
T ss_dssp HHHCHHHHHHHHHC-----C--SGGGGGGCC--HHHHHHHHHHHHHSCCCC--CTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCHHHHHHHcCC-----C--CEEEeCCCC--HHHHHHHHHHHcCCCCcc--CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 47899999999 62 3 678899999 999999999999999998 888999999999999999999999998
Q ss_pred Hh
Q 042328 80 MP 81 (156)
Q Consensus 80 l~ 81 (156)
|.
T Consensus 116 l~ 117 (119)
T 2q81_A 116 KS 117 (119)
T ss_dssp HT
T ss_pred Hh
Confidence 74
No 16
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.61 E-value=1.7e-17 Score=109.35 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=65.7
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCC-CCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTME-VAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 78 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~-~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~ 78 (156)
|++|+||++|| +++.+ . ..|.+++ ++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|++
T Consensus 52 aa~S~yF~~~f~~~~~e--~--~~i~l~~~~~--~~~f~~~l~~iYtg~~~~--~~~~v~~ll~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 52 AACSEYFWQALVGQTKN--D--LVVSLPEEVT--ARGFGPLLQFAYTAKLLL--SRENIREVIRCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp HHHBHHHHHHHTTCCCS--S--CEEECCTTCC--HHHHHHHHHHHTTSEEEE--CTTTHHHHHHHHHHHTBSSCTTSSCC
T ss_pred HHcCHHHHHHhcCCCCC--C--cEEEeCCCCC--HHHHHHHHHhHcCCceEE--CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57899999999 88877 4 6799998 99 999999999999999998 88999999999999999999999986
Q ss_pred HH
Q 042328 79 HM 80 (156)
Q Consensus 79 ~l 80 (156)
+|
T Consensus 124 ~L 125 (125)
T 3ohu_A 124 FL 125 (125)
T ss_dssp CC
T ss_pred hC
Confidence 53
No 17
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.61 E-value=3.9e-17 Score=108.25 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=60.2
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeC-CCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTM-EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 78 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~-~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~ 78 (156)
|++|+||++|| ++ .. ..|.++ +++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|++
T Consensus 53 aa~S~~F~~~f~~~----~~--~~i~l~~~~~--~~~f~~ll~~iYtg~~~i--~~~~~~~ll~~A~~~~i~~l~~~C~~ 122 (129)
T 3ga1_A 53 AASSSYFRDLFNNS----RS--AVVELPAAVQ--PQSFQQILSFCYTGRLSM--NVGDQDLLMYTAGFLQIQEIMEKGTE 122 (129)
T ss_dssp HHHBHHHHHHHHHC----CC--SEEECCTTCC--HHHHHHHHHHHHHSEEEC--CTTTHHHHHHHHHHTTBTTSSCC---
T ss_pred HHcCHHHHHHHcCC----CC--CEEEECCCCC--HHHHHHHHHHHhCCcccc--CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 47899999999 65 44 789997 899 999999999999999998 88899999999999999999999999
Q ss_pred HHhhh
Q 042328 79 HMPAS 83 (156)
Q Consensus 79 ~l~~~ 83 (156)
+|.+.
T Consensus 123 ~L~~~ 127 (129)
T 3ga1_A 123 FFLKV 127 (129)
T ss_dssp -----
T ss_pred HHHHh
Confidence 98765
No 18
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.60 E-value=2.3e-17 Score=108.61 Aligned_cols=73 Identities=21% Similarity=0.234 Sum_probs=63.5
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeC-CCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTM-EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 78 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~-~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~ 78 (156)
|++|+||++|| +++.++ ..|.++ +++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|++
T Consensus 49 aa~S~yF~~mf~~~~~e~----~~i~l~~~v~--~~~f~~lL~~iYtg~~~i--~~~~v~~ll~~A~~~~~~~L~~~C~~ 120 (124)
T 2ihc_A 49 AACSSYFHSRIVGQADGE----LNITLPEEVT--VKGFEPLIQFAYTAKLIL--SKENVDEVCKCVEFLSVHNIEESCFQ 120 (124)
T ss_dssp HHHBHHHHHHHTTC---C----EEEECCTTSC--HHHHHHHHHHHHHSEEEE--ETTTHHHHHHHHHHHTBSSCCGGGGG
T ss_pred HHcCHHHHHHHcCCCCCC----ceEeecCCcC--HHHHHHHHHHhcCCCccc--CHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 57899999999 888765 468884 899 999999999999999988 88999999999999999999999998
Q ss_pred HHh
Q 042328 79 HMP 81 (156)
Q Consensus 79 ~l~ 81 (156)
+|.
T Consensus 121 ~l~ 123 (124)
T 2ihc_A 121 FLK 123 (124)
T ss_dssp TC-
T ss_pred HHh
Confidence 764
No 19
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.50 E-value=1.8e-14 Score=93.72 Aligned_cols=63 Identities=10% Similarity=0.278 Sum_probs=57.5
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCC-CccchHHHHHHHHHhccccCchHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSL-PREKLQKHVVGLFAAGDNYEIEYLRE 74 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~-~~~~~~~~~~~ll~~A~~~~~~~l~~ 74 (156)
|++|+||++|| ++ . ..|.+++++ +.+|+.+|+|+|||.+ .+ +.+++.+++.+|++|+++.|+.
T Consensus 51 aa~S~~F~~~f~~~-----~--~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~--~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 51 SASSTYFHQLFSVA-----G--QVVELSFIR--AEIFAEILNYIYSSKIVRV--RSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHCHHHHHHTTSC-----C--SEEEECSSC--HHHHHHHHHHHTTSCCCSC--CHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHcCHHHHHHHcCC-----C--CEEEeCCCC--HHHHHHHHHhhcCCCcCCC--CHHHHHHHHHHHHHhCccccCc
Confidence 57899999999 64 4 689999999 9999999999999999 57 8999999999999999999874
No 20
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.47 E-value=1.8e-14 Score=94.11 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=60.4
Q ss_pred CcCcHHHHHhhcCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHH
Q 042328 1 AARSSILKDCLDGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHM 80 (156)
Q Consensus 1 aa~S~yF~~mf~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 80 (156)
|++|+||++ .. ..|.+++++ +.+|+.+|+|+|||.+.+ +.+++.+++.+|++|+++.|++.|++.+
T Consensus 50 aa~S~yF~~--------~~--~~i~l~~v~--~~~f~~ll~fiYtg~~~i--~~~~v~~ll~aA~~l~i~~l~~~C~~~~ 115 (119)
T 3m5b_A 50 AGVSQQLGR--------RG--QWALGEGIS--PSTFAQLLNFVYGESVEL--QPGELRPLQEAARALGVQSLEEACWRAR 115 (119)
T ss_dssp HTTCGGGCC--------CE--EEECCSSCC--HHHHHHHHHHHTTCCEEE--CGGGHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHcCHHHhc--------CC--CEEEeCCCC--HHHHHHHHHHHcCCCcCc--CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 578999942 34 679999999 999999999999999998 8999999999999999999999999987
Q ss_pred hh
Q 042328 81 PA 82 (156)
Q Consensus 81 ~~ 82 (156)
.+
T Consensus 116 ~~ 117 (119)
T 3m5b_A 116 GD 117 (119)
T ss_dssp --
T ss_pred hh
Confidence 65
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.42 E-value=3.6e-13 Score=92.20 Aligned_cols=84 Identities=20% Similarity=0.200 Sum_probs=69.1
Q ss_pred CcCcHHHHHhh-c-CCC-CCCCCCCCeeeCCCCCcHHHHHHHhhhHccCC--------------------------CCcc
Q 042328 1 AARSSILKDCL-D-GKL-LPISSTDGMTTMEVAEEGEVLKALVDFLYTGS--------------------------LPRE 51 (156)
Q Consensus 1 aa~S~yF~~mf-~-~~~-e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~--------------------------~~~~ 51 (156)
|+.|+||++|| + ++. |+.. ..|.+++++ +.++..+++|+|++. +.+
T Consensus 20 A~~S~~i~~m~~~~~~~~e~~~--~~Ipl~~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~i- 94 (159)
T 2ast_A 20 AKQSVTIKTMLEDLGMDDEGDD--DPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKV- 94 (159)
T ss_dssp HHTCHHHHHHTTSSCSS--------CEECTTSC--HHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCS-
T ss_pred HHHhHHHHHHHHhcCCcccccC--CCcCCCCcc--HHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcC-
Confidence 46899999999 6 777 6766 789999999 999999999999876 444
Q ss_pred chHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHH
Q 042328 52 KLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAI 90 (156)
Q Consensus 52 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~ 90 (156)
+.+++.+|+.+|+++++.+|...|.+++...+..+++-
T Consensus 95 -d~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~e 132 (159)
T 2ast_A 95 -DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPE 132 (159)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHH
T ss_pred -CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHH
Confidence 78899999999999999999999999997776655543
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.06 E-value=1.3e-10 Score=72.97 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=49.2
Q ss_pred CcCcHHHHHhh-c--CCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHc-----c---CCCC---ccchHHHHHHHHHhccc
Q 042328 1 AARSSILKDCL-D--GKLLPISSTDGMTTMEVAEEGEVLKALVDFLY-----T---GSLP---REKLQKHVVGLFAAGDN 66 (156)
Q Consensus 1 aa~S~yF~~mf-~--~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Y-----t---~~~~---~~~~~~~~~~ll~~A~~ 66 (156)
|++|+||++|| + ++.|+.. ..|.+++++ +.+++.+++|+| + +.++ + +.+++.+|+.+|++
T Consensus 21 A~~S~~ik~m~~~~~~~~E~~~--~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i--~~~~l~eLl~AAny 94 (97)
T 4ajy_C 21 ALTSGTIKAMLSGPGQFAENET--NEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI--APEIALELLMAANF 94 (97)
T ss_dssp HTTSHHHHHHHCCC----------CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCC--CGGGHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhCCCccccCC--CceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcC--CHHHHHHHHHHHhh
Confidence 57899999999 5 6777777 889999999 999999999999 4 5665 5 88899999999999
Q ss_pred cC
Q 042328 67 YE 68 (156)
Q Consensus 67 ~~ 68 (156)
++
T Consensus 95 L~ 96 (97)
T 4ajy_C 95 LD 96 (97)
T ss_dssp HT
T ss_pred hC
Confidence 86
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.03 E-value=6.7e-10 Score=74.39 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=66.6
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCC--------------------------CCccch
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGS--------------------------LPREKL 53 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~--------------------------~~~~~~ 53 (156)
|..|.++++|| +.. . ..|.+++++ ..++..+++|+|... +.+ +
T Consensus 21 A~~S~~ik~ml~~~~----~--~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~v--d 90 (141)
T 1fs1_B 21 AKQSVTIKTMLEDLG----M--DPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKV--D 90 (141)
T ss_dssp GGTCHHHHHHHHHTC----C--SSEECTTCC--HHHHHHHHHHHHHHTTCC-----------------HHHHHHTCS--C
T ss_pred HHHhHHHHHHHHhcC----C--CceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhC--C
Confidence 56899999999 531 4 679999999 999999999998744 333 6
Q ss_pred HHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHH
Q 042328 54 QKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAID 91 (156)
Q Consensus 54 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~ 91 (156)
.+++.+|+.+|+++++.+|...|.+++...+..++.-.
T Consensus 91 ~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ee 128 (141)
T 1fs1_B 91 QGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE 128 (141)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH
Confidence 78889999999999999999999998888777666543
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.85 E-value=1e-09 Score=75.04 Aligned_cols=93 Identities=13% Similarity=0.217 Sum_probs=53.9
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCC-------------------------ccchH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLP-------------------------REKLQ 54 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~-------------------------~~~~~ 54 (156)
|..|++|+.|| +.. .. ..|.+++++ +.++..+++|+|+..-. +..+.
T Consensus 23 A~~S~~ik~ml~~~~---~~--~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~ 95 (160)
T 2p1m_A 23 ALESQTIAHMVEDDC---VD--NGVPLPNVT--SKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQ 95 (160)
T ss_dssp HHTCTTTC-----------------CCTTSC--HHHHHHHHHC-------------------------------------
T ss_pred HHHhHHHHHHHHccC---CC--CceeCCcCc--HHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCH
Confidence 45799999999 542 23 579999999 99999999999985521 12366
Q ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhhCC---hhhHHHHHHHHhhCC
Q 042328 55 KHVVGLFAAGDNYEIEYLREVCLHHMPASFQ---SSNAIDFLRIGYNYQ 100 (156)
Q Consensus 55 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~n~~~~l~~a~~~~ 100 (156)
+++.+|+.+|+++++.+|...|.+++...+. ++.+-.++.+...+.
T Consensus 96 ~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t 144 (160)
T 2p1m_A 96 ATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT 144 (160)
T ss_dssp -----CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence 7889999999999999999999999988884 445555555444443
No 25
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=1.9e-08 Score=63.92 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=47.4
Q ss_pred HhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHHh
Q 042328 80 MPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESAS 130 (156)
Q Consensus 80 l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~ 130 (156)
+..+++++||+.++.+|..|++.+|.+.|.+||.+||.++.++++|..|+.
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~ 54 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPH 54 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCH
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCH
Confidence 356789999999999999999999999999999999999999999998764
No 26
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.29 E-value=2.6e-06 Score=58.52 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=59.3
Q ss_pred CcCcHHHHHhh-cCCCC----CCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCC-----------------------ccc
Q 042328 1 AARSSILKDCL-DGKLL----PISSTDGMTTMEVAEEGEVLKALVDFLYTGSLP-----------------------REK 52 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e----~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~-----------------------~~~ 52 (156)
|..|.+++.|+ +...+ ... ..|.+++++ ..++..+++|++...-. +..
T Consensus 26 A~~S~tIk~ml~~~~~~~~~~~~~--~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~v 101 (169)
T 3v7d_A 26 AERSLLLKNYLNDMGDDDDEDDDE--IVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKV 101 (169)
T ss_dssp HTTSHHHHHHHHC-------------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCS
T ss_pred HHHhHHHHHHHHhcCcccccccCC--CceeeCCCC--HHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcC
Confidence 45799999999 43322 233 679999999 99999999998652211 112
Q ss_pred hHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhh
Q 042328 53 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSN 88 (156)
Q Consensus 53 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n 88 (156)
+.+.+.+|+.+|+++++.+|...|...+...+...+
T Consensus 102 d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgkt 137 (169)
T 3v7d_A 102 DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRS 137 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCC
Confidence 557788899999999999999988888755544433
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.19 E-value=1.5e-06 Score=54.46 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=49.4
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCC-----------CC-ccchHHHHHHHHHhcccc
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGS-----------LP-REKLQKHVVGLFAAGDNY 67 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~-----------~~-~~~~~~~~~~ll~~A~~~ 67 (156)
|..|.+++.|+ +++ +... ..|.+++++ ..++..+++|+|... ++ ...+.+.+.+|+.+|+++
T Consensus 23 A~~S~~ik~ml~~~~-e~~~--~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyL 97 (99)
T 1hv2_A 23 AMISPTLKAMIEGPF-RESK--GRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97 (99)
T ss_dssp HTTCHHHHHHHHSST-TTCT--TEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhccc-ccCC--CceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHh
Confidence 46799999999 765 5555 689999999 999999999997622 10 123677888888888887
Q ss_pred Cc
Q 042328 68 EI 69 (156)
Q Consensus 68 ~~ 69 (156)
++
T Consensus 98 dI 99 (99)
T 1hv2_A 98 SI 99 (99)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 28
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.13 E-value=1e-06 Score=54.98 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=45.6
Q ss_pred CcCcHHHHHhh-c-CC-CCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCC--------CC-ccchHHHHHHHHHhccccC
Q 042328 1 AARSSILKDCL-D-GK-LLPISSTDGMTTMEVAEEGEVLKALVDFLYTGS--------LP-REKLQKHVVGLFAAGDNYE 68 (156)
Q Consensus 1 aa~S~yF~~mf-~-~~-~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~--------~~-~~~~~~~~~~ll~~A~~~~ 68 (156)
|..|.+++.|+ + +. .|+.. ..|.+++++ ..++..+++|+|... ++ ...+.+.+.+|+.+|++++
T Consensus 20 A~~S~~ik~ml~~~~~~~e~~~--~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLd 95 (96)
T 2fnj_C 20 ALTSGTIKAMLSGPGQFAENET--NEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 95 (96)
T ss_dssp HTTSHHHHHHHHCC----------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHccCCcccccC--CceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhC
Confidence 46799999999 4 33 56655 789999999 999999999997521 10 0236678888888888876
Q ss_pred c
Q 042328 69 I 69 (156)
Q Consensus 69 ~ 69 (156)
+
T Consensus 96 I 96 (96)
T 2fnj_C 96 C 96 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 29
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.74 E-value=1.5e-05 Score=50.95 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=45.7
Q ss_pred CcCcHHHHHhh-c--CCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCC--------CC-ccchHHHHHHHHHhccccC
Q 042328 1 AARSSILKDCL-D--GKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGS--------LP-REKLQKHVVGLFAAGDNYE 68 (156)
Q Consensus 1 aa~S~yF~~mf-~--~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~--------~~-~~~~~~~~~~ll~~A~~~~ 68 (156)
|..|..++.|+ + .+.|+.. ..|.+++++ ..++..+++|++... ++ ...+.+.+.+|+.+|++++
T Consensus 36 A~~S~tIk~ml~~~~~~~e~~~--~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLd 111 (112)
T 1vcb_B 36 ALTSGTIKAMLSGPGQFAENET--NEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 111 (112)
T ss_dssp HHTSHHHHHHSSCC----------CEEECSSCC--HHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHhcCCcccccC--CceeCCCCC--HHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhC
Confidence 35799999999 3 2345545 689999999 999999999996521 10 1237788999999999886
Q ss_pred c
Q 042328 69 I 69 (156)
Q Consensus 69 ~ 69 (156)
+
T Consensus 112 I 112 (112)
T 1vcb_B 112 C 112 (112)
T ss_dssp C
T ss_pred c
Confidence 4
No 30
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.72 E-value=5.4e-05 Score=47.94 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=53.6
Q ss_pred HHHHHhh-cCCC--C-CCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHH
Q 042328 5 SILKDCL-DGKL--L-PISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHM 80 (156)
Q Consensus 5 ~yF~~mf-~~~~--e-~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 80 (156)
.+|..|| +... . ... +..+-+ |-+ |..|..+|+|+.+|.+.... .-....++.-|++|+++.|.+.|.+.|
T Consensus 30 s~L~~~~~~~~~~~~~~d~-~~~~fi-DRd--p~~F~~IL~~lr~g~l~~p~-~~~~~~l~~Ea~fy~l~~L~~~l~~~i 104 (107)
T 3drz_A 30 SFLYRLCQADPDLDSDKDE-TGAYLI-DRD--PTYFGPVLNYLRHGKLVINK-DLAEEGVLEEAEFYNITSLIKLVKDKI 104 (107)
T ss_dssp SHHHHHHTTCGGGGGGBCT-TSCEEE-CSC--HHHHHHHHHHHHHSCCCCCT-TSCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhHHHhcCCCCCcCCCC-CceEEe-cCC--hHHHHHHHHHhCCCeeCCCC-CCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4788888 5421 1 111 144544 788 99999999999999987622 223478899999999999999999987
Q ss_pred hh
Q 042328 81 PA 82 (156)
Q Consensus 81 ~~ 82 (156)
.+
T Consensus 105 ~~ 106 (107)
T 3drz_A 105 RE 106 (107)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=95.98 E-value=0.0043 Score=43.45 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=52.3
Q ss_pred HHHHhh-cCC--CCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHHHhh
Q 042328 6 ILKDCL-DGK--LLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPA 82 (156)
Q Consensus 6 yF~~mf-~~~--~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~ 82 (156)
+|..|| +.. ......+..+-+ |=+ |..|..+|+|+.+|.+....+ -....++.-|++|+++.|.+.|.+.|..
T Consensus 37 ~L~~lfs~~~~~~~~~De~geyFI-DRD--P~~F~~ILnyLRtG~L~lP~~-~~~~~l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 37 FLYRLCQADPDLDSDKDETGAYLI-DRD--PTYFGPVLNYLRHGKLVINKD-LAEEGVLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp STHHHHSCCCC----BCTTCCEEE-CSC--STTHHHHHHHHHHSCCCCCTT-SCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHhcCccccCcccCCCccEEe-cCC--hHHHHHHHHHhcCCccCCCCC-CCHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 567777 432 111111144544 678 999999999999999886222 2236799999999999999999998865
Q ss_pred h
Q 042328 83 S 83 (156)
Q Consensus 83 ~ 83 (156)
.
T Consensus 113 r 113 (202)
T 3drx_A 113 R 113 (202)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=92.95 E-value=0.13 Score=31.68 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=29.7
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHh
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKN 115 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 115 (156)
++.+|+..++..|..++++.|.+.|.+|+.++
T Consensus 77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 77 LEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999875
No 33
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=91.82 E-value=0.12 Score=33.25 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=37.1
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHH
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYL 72 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l 72 (156)
..+-+ |=+ |..|..||+|+-+|.+....+ ..+..++.-|++|+++.+
T Consensus 53 g~~Fi-DRd--p~~F~~ILnflR~G~l~~p~~-~~~~~l~~Ea~fy~i~~l 99 (124)
T 1s1g_A 53 KEYFF-DRD--PEVFRCVLNFYRTGKLHYPRY-ECISAYDDELAFYGILPE 99 (124)
T ss_dssp CSEEE-CSC--HHHHHHHHHHHHHSCBCCCTT-SCHHHHHHHHHHTTCCGG
T ss_pred CcEEE-cCC--hHHHHHHHHHHhcCCCCCCCC-cCHHHHHHHHHHcCCChH
Confidence 34444 568 999999999999999876222 246889999999999986
No 34
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.56 E-value=0.18 Score=31.25 Aligned_cols=64 Identities=11% Similarity=-0.067 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhccccCchHHHHHHHHHHhhhCC------------hhhHHHHHHHHhhCCcHHHHHHHHHHHHHhH
Q 042328 52 KLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQ------------SSNAIDFLRIGYNYQLDELRDASLNFIVKNV 116 (156)
Q Consensus 52 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~------------~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 116 (156)
.+.+|..+++..|+.|+++.|...|.+++..+.. .+....++.- +..+-..+.+++.+|+..+.
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~s-dv~~E~~vf~av~~Wv~~d~ 83 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISD-GVPCSQNPTEAIEAWINFNK 83 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHT-CEETTSCHHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCH
Confidence 3788999999999999999999999999987632 2222333321 11122346677777776553
No 35
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=89.77 E-value=0.25 Score=30.45 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=36.7
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHcc-CCCCccchHHHHHHHHHhccccCchHHH
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYT-GSLPREKLQKHVVGLFAAGDNYEIEYLR 73 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt-~~~~~~~~~~~~~~ll~~A~~~~~~~l~ 73 (156)
..+-+ |=+ |..|+.+|+|+-+ |.+....+ ..+..++.-|++|+++.+.
T Consensus 42 ~eyFi-DRd--p~~F~~ILnflR~~G~l~~p~~-~~~~~~~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 42 NEYFF-DRN--RPSFDAILYFYQSGGRLRRPVN-VPLDVFSEEIKFYELGENA 90 (100)
T ss_dssp TEEEE-CSC--STTHHHHHHHHHTTSCCCCCTT-SCHHHHHHHHHHTTCCHHH
T ss_pred eeEEE-cCC--hHHHHHHHHHHhcCCcccCCCC-CCHHHHHHHHHHcCCCHHH
Confidence 44444 667 9999999999998 88865222 2467899999999998753
No 36
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=89.69 E-value=1.1 Score=28.30 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=29.1
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHh
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKN 115 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 115 (156)
++.+++..++..|..++++.|.+.|.+|+.++
T Consensus 95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999754
No 37
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=89.11 E-value=0.18 Score=33.15 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=36.3
Q ss_pred CeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHH
Q 042328 23 GMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYL 72 (156)
Q Consensus 23 ~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l 72 (156)
.+-+ |=+ |..|+.+|+|+-+|.+....+ ..+..++.-|++|+++.+
T Consensus 76 ~yFi-DRd--p~~F~~ILnflR~G~l~~p~~-~~~~~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 76 EYFF-DRD--PEVFRCVLNFYRTGKLHYPRY-ECISAYDDELAFYGILPE 121 (140)
T ss_dssp EEEE-CSC--HHHHHHHHHHHHHSSBCCCTT-SCHHHHHHHHHHHTCCGG
T ss_pred eEEE-eCC--cHHHHHHHHHHhcCCcCCCCC-cCHHHHHHHHHHcCCChH
Confidence 3444 567 999999999999999876222 247889999999999886
No 38
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=88.36 E-value=0.53 Score=30.24 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.5
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEEL 119 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v 119 (156)
++.+|+..++..|..++++.|.+.|.+|+.+++...
T Consensus 87 i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~ 122 (135)
T 2yy9_A 87 LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQ 122 (135)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence 677899999999999999999999999998877643
No 39
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=87.96 E-value=1.3 Score=27.39 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=27.6
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIV 113 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~ 113 (156)
++.+|+..++..|..++++.|.+.|.+|+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 567899999999999999999999999874
No 40
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=87.37 E-value=0.92 Score=28.33 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHh
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKN 115 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 115 (156)
++.+|+..++..|..++.+.|.+.|.+|+.++
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 56789999999999999999999999998764
No 41
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=87.31 E-value=0.15 Score=31.74 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHH
Q 042328 28 EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYL 72 (156)
Q Consensus 28 ~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l 72 (156)
|=+ |..|..+|+|+-+|.+....+ ..+..++.-|++|+++.+
T Consensus 45 DRd--p~~F~~ILnflR~g~l~~p~~-~~~~~l~~Ea~fy~i~~l 86 (105)
T 1nn7_A 45 DRD--PDIFRHILNFYRTGKLHYPRH-ECISAYDEELAFFGLIPE 86 (105)
T ss_dssp CSC--TTTHHHHHHHHHHSCBCCCTT-SCHHHHHHHHHHHTCCSC
T ss_pred eCC--cHHHHHHHHHHhcCCCCCCCC-cCHHHHHHHHHHcCCCHH
Confidence 557 999999999999999876222 246789999999999876
No 42
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=86.97 E-value=0.84 Score=28.52 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=27.6
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIV 113 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~ 113 (156)
++.+|+..++..|..++++.|.+.|.+|+.
T Consensus 88 i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 667899999999999999999999999874
No 43
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=86.46 E-value=2.4 Score=26.42 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=28.9
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHh
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKN 115 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 115 (156)
++.+|+..++..|..++.+.|.+.|.+++.+.
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999998753
No 44
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=84.99 E-value=1.4 Score=27.37 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=26.8
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFI 112 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i 112 (156)
++.+++..++..|..++.+.|.+.|.+|+
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 56789999999999999999999999886
No 45
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=84.45 E-value=0.28 Score=31.66 Aligned_cols=34 Identities=9% Similarity=0.146 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVE 117 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 117 (156)
++.+|+..++..|..++++.|.+.|.+|+.+++.
T Consensus 101 i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 101 LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 6778999999999999999999999999987653
No 46
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=84.41 E-value=0.24 Score=31.33 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=36.5
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHH
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLR 73 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~ 73 (156)
..+-+ |=+ |..|..+|+|+.+|.+....+ .....++.-|++|+++...
T Consensus 46 g~~Fi-DRd--p~~F~~ILnylR~G~l~~p~~-~~~~~~~~Ea~fy~i~~~~ 93 (115)
T 3kvt_A 46 NEYFF-DRH--PGVFAQIINYYRSGKLHYPTD-VCGPLFEEELEFWGLDSNQ 93 (115)
T ss_dssp TEEEE-CSC--TTTHHHHHHHHHHSCBCCCSS-SCHHHHHHHHHHHTCCGGG
T ss_pred CcEEE-ecC--hHHHHHHHHHhcCCCCCCCCc-ccHHHHHHHHHHhCCChHH
Confidence 34444 568 999999999999999876222 2457889999999998753
No 47
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=82.12 E-value=3 Score=27.44 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=29.4
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKNV 116 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 116 (156)
++.+++..++..|..+.++.|.+.|.+++.+++
T Consensus 100 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 132 (172)
T 3htm_A 100 NLDKMADDLLAAADKYALERLKVMCEDALCSNL 132 (172)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 456789999999999999999999999998653
No 48
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=78.47 E-value=1.2 Score=28.95 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=26.6
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFI 112 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i 112 (156)
++.+|+..++..|..++++.|.+.|.+|+
T Consensus 115 i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 56789999999999999999999998875
No 49
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=77.90 E-value=2.1 Score=26.84 Aligned_cols=31 Identities=10% Similarity=0.047 Sum_probs=27.1
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVK 114 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~ 114 (156)
++.+|+..++..|..+....|.+.|.+++..
T Consensus 87 i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 87 LQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 5788999999999999999999999998764
No 50
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=77.20 E-value=1.4 Score=32.24 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhccccCchHHHHHHHHHHhhhCC
Q 042328 53 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQ 85 (156)
Q Consensus 53 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~ 85 (156)
+.+++..++.+|++|+++.|+..|.++|..++.
T Consensus 273 ~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 305 (312)
T 3hqi_A 273 SVENAAEILILADLHSADQLKTQAVDFINYHAT 305 (312)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 556899999999999999999999999988754
No 51
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=75.24 E-value=1.6 Score=27.88 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=25.9
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVE 117 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 117 (156)
++.+++..++..|..++++.|.+.|.+++.+++.
T Consensus 91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~ 124 (145)
T 4eoz_A 91 NLDKMADDLLAAADKYALERLKVMCEDALCSNLS 124 (145)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHCC------
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 4567899999999999999999999999986543
No 52
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=71.99 E-value=1.5 Score=27.73 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=23.1
Q ss_pred hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHh
Q 042328 83 SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKN 115 (156)
Q Consensus 83 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 115 (156)
.++.+|+..++..|..++.+.|.+.|.+|+.+.
T Consensus 95 ~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 95 SMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp ECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 367889999999999999999999999998764
No 53
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=70.83 E-value=7.7 Score=25.56 Aligned_cols=35 Identities=6% Similarity=0.182 Sum_probs=31.1
Q ss_pred hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHH
Q 042328 83 SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVE 117 (156)
Q Consensus 83 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 117 (156)
.++.+++.+++..|.-.+...|.+.|.+++...+.
T Consensus 93 ~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~ 127 (159)
T 2ast_A 93 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 127 (159)
T ss_dssp CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 37888999999999999999999999999986554
No 54
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=69.85 E-value=8.4 Score=27.19 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKNV 116 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 116 (156)
++.+|+..++..|..++.+.|.+.|.+|+.+++
T Consensus 99 i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l 131 (256)
T 3hve_A 99 LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCI 131 (256)
T ss_dssp CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhC
Confidence 677899999999999999999999999998653
No 55
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=68.60 E-value=8.7 Score=27.51 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=29.3
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHh
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKN 115 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 115 (156)
++.+|+..++..|..++.+.|.+.|.+|+.++
T Consensus 107 i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~ 138 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKK 138 (279)
T ss_dssp EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999864
No 56
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=63.26 E-value=18 Score=23.26 Aligned_cols=35 Identities=6% Similarity=0.182 Sum_probs=31.0
Q ss_pred hCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHH
Q 042328 83 SFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVE 117 (156)
Q Consensus 83 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 117 (156)
.++.+++.+++..|.-.+...|.+.|.+++...+.
T Consensus 88 ~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 88 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 37888999999999999999999999999986554
No 57
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=62.66 E-value=8.8 Score=16.65 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=16.7
Q ss_pred HHHHHHhhCCcHHHHHHHHHH
Q 042328 91 DFLRIGYNYQLDELRDASLNF 111 (156)
Q Consensus 91 ~~l~~a~~~~~~~L~~~~~~~ 111 (156)
.++-+|.+++.++|...|++-
T Consensus 3 kvmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 3 KVMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHHBCCCCHHHHHHHHHH
T ss_pred eEEeehhhcCCHHHHHHHHhc
Confidence 456788899999999888753
No 58
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=51.71 E-value=19 Score=18.65 Aligned_cols=30 Identities=3% Similarity=0.038 Sum_probs=19.4
Q ss_pred hhHHHHHhhCcchHHHHHHHHhcccccchh
Q 042328 123 DKYEESASAFPHLCVLITRGCFMGANRRAY 152 (156)
Q Consensus 123 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~ 152 (156)
+.+..|.+++++++..+-+..++.+.++-.
T Consensus 16 qal~hLiknD~~Fl~~iHeAYl~sl~~~l~ 45 (46)
T 2wx4_A 16 QAFTYLIQNDKEFANKLHKAYLNGCSNLLL 45 (46)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHC-------
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHhc
Confidence 346678889999999999998888777643
No 59
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=47.64 E-value=47 Score=20.47 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=58.6
Q ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHHhhCcc
Q 042328 55 KHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPH 134 (156)
Q Consensus 55 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~ 134 (156)
+....-|..|-+|.+..+.+.........++++.+..+..+...| ...+..-+..|..+--...++.+++.-+....|.
T Consensus 11 ~~~~~~LKaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~-~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~ 89 (107)
T 3b0b_B 11 ELLIQRLRAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQ-CENFARDLEMFARHAKRSTITSEDVKLLARRSNS 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHH
Confidence 455667788888877766554444334567777777777777666 4567777777776666667788898888888888
Q ss_pred hHHHH
Q 042328 135 LCVLI 139 (156)
Q Consensus 135 l~~~~ 139 (156)
+...+
T Consensus 90 l~~~l 94 (107)
T 3b0b_B 90 LLKYI 94 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 60
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=45.77 E-value=14 Score=24.28 Aligned_cols=34 Identities=6% Similarity=0.200 Sum_probs=23.4
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVE 117 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~ 117 (156)
++.+++.+++..|.-.+...|.+.|.+++...+.
T Consensus 93 vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 93 IDQATLFELILAANYLNIKNLLDLTCQTVADMIK 126 (160)
T ss_dssp --------CHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 6778899999999999999999999999986553
No 61
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=43.89 E-value=15 Score=29.18 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=35.9
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHcc-CCCCccchHHHHHHHHHhccccCchHHH
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYT-GSLPREKLQKHVVGLFAAGDNYEIEYLR 73 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt-~~~~~~~~~~~~~~ll~~A~~~~~~~l~ 73 (156)
.++-+ |=+ |..|+.+|.|+.+ |++... ..-....+..-|++|+++.+.
T Consensus 93 ~~~f~-DR~--~~~F~~IL~~~r~~g~l~~p-~~~~~~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 93 NEYFF-DRN--RPSFDAILYYYQSGGRLRRP-VNVPLDIFSEEIRFYELGEEA 141 (514)
T ss_dssp TEEEE-CSC--HHHHHHHHHHHHHTSCCCCC-TTSCHHHHHHHHHHTTCCHHH
T ss_pred CCEEE-cCC--hHHHHHHHHHHhcCCccccC-CcccHHHHHHHHHhcCCCHHH
Confidence 33444 567 9999999999999 888752 222456788899999998753
No 62
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=42.66 E-value=26 Score=18.52 Aligned_cols=29 Identities=3% Similarity=-0.089 Sum_probs=21.8
Q ss_pred hhHHHHHhhCcchHHHHHHHHhcccccch
Q 042328 123 DKYEESASAFPHLCVLITRGCFMGANRRA 151 (156)
Q Consensus 123 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~ 151 (156)
+.+..|.+++++++..+-+..++.+.++.
T Consensus 18 qaLihLIqnD~~Fl~~IHeAYl~sl~~~~ 46 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVYLQVLTKNK 46 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999888887764
No 63
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=41.34 E-value=22 Score=16.39 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=15.4
Q ss_pred HHHHHHhhCCcHHHHHHHHHH
Q 042328 91 DFLRIGYNYQLDELRDASLNF 111 (156)
Q Consensus 91 ~~l~~a~~~~~~~L~~~~~~~ 111 (156)
.++-+|.+++.++|...|+.-
T Consensus 8 kvmcyaqrhsspellrrcldn 28 (34)
T 2cmy_B 8 KVMCYAQRHSSPELLRRCLDN 28 (34)
T ss_dssp HHHHHHBC--CCHHHHHHHHH
T ss_pred hHHHHHhhcCCHHHHHHHHHh
Confidence 567789999999999988764
No 64
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=25.23 E-value=1.5e+02 Score=19.50 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=28.3
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHHh
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVKN 115 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 115 (156)
++.+.+.+++..|.-.+...|.+.|.+.+...
T Consensus 101 vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ 132 (169)
T 3v7d_A 101 VDQEMLYEIILAANYLNIKPLLDAGCKVVAEM 132 (169)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 67788899999999999999999999998753
No 65
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=22.98 E-value=1.1e+02 Score=17.13 Aligned_cols=49 Identities=8% Similarity=0.077 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhc
Q 042328 72 LREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVF 121 (156)
Q Consensus 72 l~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~ 121 (156)
+....++++..+ +.+.+...+.-.-..-...+...|..++.+....+.+
T Consensus 11 vv~~ve~~l~~n-t~~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~iI~ 59 (77)
T 1of9_A 11 LINTLENLLTTK-GADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQ 59 (77)
T ss_dssp HHHHHHHHCSSS-CSHHHHHHHHHHHTTCSSTTHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 445556666666 6666656665432222256788899988888777743
No 66
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=22.05 E-value=34 Score=20.81 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=20.3
Q ss_pred cchhHHHHHhhCcchHHHHHHHHhcccccc
Q 042328 121 FSDKYEESASAFPHLCVLITRGCFMGANRR 150 (156)
Q Consensus 121 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~ 150 (156)
..+.|..+...+|.+...+++.+...+.+|
T Consensus 111 ~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 140 (142)
T 3mdp_A 111 NGARLREMSENNQALGQVLMNNVAAAVLAR 140 (142)
T ss_dssp EHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred eHHHHHHHHHHChHHHHHHHHHHHHHHHHh
Confidence 455677777778888877777766555443
No 67
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=21.49 E-value=1.2e+02 Score=17.02 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHh
Q 042328 73 REVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELV 120 (156)
Q Consensus 73 ~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~ 120 (156)
....++++ ++-+-+++...+.-.-..--..+...|..++.+....+.
T Consensus 11 v~~le~~l-~n~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii 57 (74)
T 1l9l_A 11 VQKLKKMV-DKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVI 57 (74)
T ss_dssp HHHHHHHC-SSCCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cccCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 34455566 555666666666555444335589999999988777764
No 68
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=20.15 E-value=1.7e+02 Score=18.19 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=50.1
Q ss_pred HHHHhccccCchHHHHHHHHHHhhhCChhhHHHHHHHHhhCCcHHHHHHHHHHHHHhHHHHhcchhHHHHHhhCcchHHH
Q 042328 59 GLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQLDELRDASLNFIVKNVEELVFSDKYEESASAFPHLCVL 138 (156)
Q Consensus 59 ~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~l~~~ 138 (156)
.=|.+|-.|.|..+.+.-.....-.++++.+..+..+...+. ..+..-+..|...--...++.++..-+....|.|..-
T Consensus 23 ~rLKaal~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~-~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~ 101 (113)
T 4dra_A 23 QRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQC-ENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKY 101 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHH
Confidence 345666666666554433322222366666666666655543 4566666666665555666778888888878886543
Q ss_pred HHHHHhccc
Q 042328 139 ITRGCFMGA 147 (156)
Q Consensus 139 ~~~~~~~~~ 147 (156)
++.....+
T Consensus 102 -l~~~~~el 109 (113)
T 4dra_A 102 -ITDKSEEI 109 (113)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 44444333
No 69
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=20.12 E-value=57 Score=19.68 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=22.2
Q ss_pred cchhHHHHHhhCcchHHHHHHHHhcccccc
Q 042328 121 FSDKYEESASAFPHLCVLITRGCFMGANRR 150 (156)
Q Consensus 121 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~ 150 (156)
..+.|..+...+|.+...+++.+..++++.
T Consensus 106 ~~~~~~~l~~~~p~~~~~~~~~~~~r~~~~ 135 (138)
T 1vp6_A 106 HSADFQMLCSSSPEIAEIFRKTALERRGAA 135 (138)
T ss_dssp EHHHHHHHHHHCHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHCHHHHHHHHHHHHHhhccc
Confidence 456788888888998888888877776654
Done!