Query 042328
Match_columns 156
No_of_seqs 116 out of 1189
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 08:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042328.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042328hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r29a_ d.42.1.1 (A:) B-cell l 99.7 2.1E-18 1.5E-22 111.9 5.1 76 1-82 45-121 (122)
2 d1buoa_ d.42.1.1 (A:) Promyelo 99.6 8.1E-17 5.9E-21 104.1 5.8 71 1-82 48-119 (121)
3 d2c9wc1 d.42.1.1 (C:17-112) El 97.7 1.9E-05 1.4E-09 47.6 4.0 64 1-68 20-95 (96)
4 d1hv2a_ d.42.1.1 (A:) Elongin 97.5 9.9E-05 7.2E-09 44.5 5.4 64 1-69 23-99 (99)
5 d1fs1b1 a.157.1.1 (B:86-140) C 94.4 0.032 2.4E-06 29.3 4.1 39 53-91 11-49 (55)
6 d1t1da_ d.42.1.2 (A:) Shaker p 93.9 0.0082 5.9E-07 35.8 1.1 46 22-71 42-88 (100)
7 d1nexa1 a.157.1.1 (A:116-185) 93.3 0.063 4.6E-06 29.6 4.1 39 53-91 12-50 (70)
8 d3kvta_ d.42.1.2 (A:) akv3.1 v 92.7 0.0086 6.3E-07 35.9 -0.3 51 22-76 43-94 (103)
9 d1nexa2 d.42.1.1 (A:4-103) Cen 92.6 0.043 3.1E-06 30.4 2.7 43 1-45 20-65 (72)
10 d1nn7a_ d.42.1.2 (A:) Potassiu 92.1 0.016 1.2E-06 34.7 0.5 47 22-72 40-86 (105)
11 d1fs1b2 d.42.1.1 (B:2-68) Cycl 91.4 0.13 9.6E-06 27.3 3.8 37 1-45 20-57 (61)
12 d1r29a_ d.42.1.1 (A:) B-cell l 89.3 0.23 1.6E-05 29.9 4.0 31 84-114 91-121 (122)
13 d1buoa_ d.42.1.1 (A:) Promyelo 87.5 0.36 2.6E-05 29.1 4.1 30 84-113 89-118 (121)
14 d2cmyb1 g.2.4.1 (B:7-29) Tryps 54.2 5.3 0.00038 16.3 2.0 19 92-110 3-21 (26)
15 d1b89a_ a.118.1.3 (A:) Clathri 42.6 14 0.0011 25.7 4.3 18 130-147 232-249 (336)
16 d1tafa_ a.22.1.3 (A:) TAF(II)4 33.1 10 0.00076 20.0 1.6 19 25-45 15-33 (68)
17 d1d5ya1 a.4.1.8 (A:3-56) Rob t 31.0 12 0.00091 18.2 1.7 41 104-144 4-44 (54)
18 d1bl0a1 a.4.1.8 (A:9-62) MarA 26.1 31 0.0022 16.5 2.8 40 105-144 5-44 (54)
19 d2af7a1 a.152.1.2 (A:1-119) Ga 23.4 64 0.0047 18.4 6.3 73 26-100 26-101 (119)
20 d3e5ua2 b.82.3.2 (A:9-147) Chl 23.1 18 0.0013 21.1 1.7 28 121-148 100-127 (139)
No 1
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.72 E-value=2.1e-18 Score=111.89 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=70.3
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| +++.++.. ..+.+++++ +++|..+|+|+|||++.+ +.+++.+++.+|++|+++.|++.|+++
T Consensus 45 a~~S~~F~~~f~~~~~e~~~--~~~~~~~v~--~~~f~~ll~~~Ytg~~~i--~~~~v~~ll~~A~~l~i~~L~~~C~~~ 118 (122)
T d1r29a_ 45 MACSGLFYSIFTDQLKRNLS--VINLDPEIN--PEGFNILLDFMYTSRLNL--REGNIMAVMATAMYLQMEHVVDTCRKF 118 (122)
T ss_dssp HHHCHHHHHHHTSTTTTTCS--EEECCTTSC--HHHHHHHHHHHHHSCCCC--CTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhCCHHHHHHhccchhhhcc--eeeeecccC--HHHHHHHHhhhcCCeecC--chhhHHHHHHHHHHHCcHHHHHHHHHH
Confidence 47899999999 99998877 667778999 999999999999999998 888999999999999999999999999
Q ss_pred Hhh
Q 042328 80 MPA 82 (156)
Q Consensus 80 l~~ 82 (156)
|..
T Consensus 119 L~~ 121 (122)
T d1r29a_ 119 IKA 121 (122)
T ss_dssp HHT
T ss_pred HHh
Confidence 875
No 2
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.65 E-value=8.1e-17 Score=104.08 Aligned_cols=71 Identities=24% Similarity=0.395 Sum_probs=65.1
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHHHHHHHHH
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHH 79 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 79 (156)
|++|+||++|| ++ . .++.+++++ +.+|..+|+|+|||++.+ +.+++.+++.+|++|+++.|++.|.++
T Consensus 48 aa~S~~F~~lf~~~-----~--~~i~~~~v~--~~~f~~ll~~~Ytg~i~l--~~~~v~~ll~~A~~l~~~~L~~~C~~~ 116 (121)
T d1buoa_ 48 ACTSKMFEILFHRN-----S--QHYTLDFLS--PKTFQQILEYAYTATLQA--KAEDLDDLLYAAEILEIEYLEEQCLKM 116 (121)
T ss_dssp HHHCHHHHHHTTSC-----C--SEEEECSSC--HHHHHHHHHHHHHSCCCC--CGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccChhhhhhccCc-----c--ceeecCCCC--HHHHHHHHHheEccccCC--cHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 57899999999 53 3 568999999 999999999999999998 888999999999999999999999999
Q ss_pred Hhh
Q 042328 80 MPA 82 (156)
Q Consensus 80 l~~ 82 (156)
|..
T Consensus 117 L~~ 119 (121)
T d1buoa_ 117 LET 119 (121)
T ss_dssp HHH
T ss_pred HHh
Confidence 854
No 3
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.69 E-value=1.9e-05 Score=47.60 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=42.5
Q ss_pred CcCcHHHHHhh-c--CCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHcc--------CCCC-ccchHHHHHHHHHhccccC
Q 042328 1 AARSSILKDCL-D--GKLLPISSTDGMTTMEVAEEGEVLKALVDFLYT--------GSLP-REKLQKHVVGLFAAGDNYE 68 (156)
Q Consensus 1 aa~S~yF~~mf-~--~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt--------~~~~-~~~~~~~~~~ll~~A~~~~ 68 (156)
|..|..++.|+ + +..++.. ..|++++++ ..++..+++|++. +.++ .+.+.+.+.+|+.+|++++
T Consensus 20 A~~S~tI~~ml~~~~~~~e~~~--~~IpL~nV~--s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~~l~eLi~AAnyLd 95 (96)
T d2c9wc1 20 ALTSGTIKAMLSGPGQFAENET--NEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 95 (96)
T ss_dssp HTTSHHHHHC--------------CEEECTTCC--HHHHHHHHHHHHHHHHTC----CCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHhccCccccCCC--CeeECCCCC--HHHHHHHHHHHHhhccCcCCcCCCCCCcCCHHHHHHHHHHHhhhc
Confidence 34699999999 3 3455555 789999999 9999999999842 1111 1236778889999998875
No 4
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.50 E-value=9.9e-05 Score=44.55 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=48.0
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHcc-----------CCC-CccchHHHHHHHHHhcccc
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYT-----------GSL-PREKLQKHVVGLFAAGDNY 67 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt-----------~~~-~~~~~~~~~~~ll~~A~~~ 67 (156)
|..|..++.|+ +.+.++. ..|.+++++ ..++..+++|++. +.+ ..+.+.+.+.+|+.+|+++
T Consensus 23 A~~S~tI~~ml~~~~~e~~---~~Ipl~~V~--s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd~~~l~eLi~AAnyL 97 (99)
T d1hv2a_ 23 AMISPTLKAMIEGPFRESK---GRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97 (99)
T ss_dssp HTTCHHHHHHHHSSTTTCT---TEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHccCCCCc---CccccCCCC--hHHHHHHHHHHHHhhhCcCcccccccCCCCCCCHHHHHHHHHHHhhh
Confidence 35699999999 6655553 569999999 9999999999853 110 1223667788999999987
Q ss_pred Cc
Q 042328 68 EI 69 (156)
Q Consensus 68 ~~ 69 (156)
++
T Consensus 98 dI 99 (99)
T d1hv2a_ 98 SI 99 (99)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 5
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.43 E-value=0.032 Score=29.29 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHH
Q 042328 53 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAID 91 (156)
Q Consensus 53 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~ 91 (156)
+.....+|+.+|+++++++|...|.+.+...+..++.-+
T Consensus 11 d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~ee 49 (55)
T d1fs1b1 11 DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE 49 (55)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHH
Confidence 566789999999999999999999999887776655443
No 6
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=93.91 E-value=0.0082 Score=35.80 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHccC-CCCccchHHHHHHHHHhccccCchH
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYTG-SLPREKLQKHVVGLFAAGDNYEIEY 71 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt~-~~~~~~~~~~~~~ll~~A~~~~~~~ 71 (156)
..+-+ |=+ |..|+.+|+|+-++ .+.. ........++.-|++|+++.
T Consensus 42 g~~Fi-DRd--p~~F~~IL~flR~~~~l~~-~~~~~~~~l~~Ea~y~gi~~ 88 (100)
T d1t1da_ 42 NEYFF-DRN--RPSFDAILYFYQSGGRLRR-PVNVPLDVFSEEIKFYELGE 88 (100)
T ss_dssp TEEEE-CSC--STTHHHHHHHHHTTSCCCC-CTTSCHHHHHHHHHHTTCCH
T ss_pred CeEEE-ecC--HHHHHHHHHHHhcCCCcCC-CCcccHHHHHHHHHHcCCCH
Confidence 45555 567 99999999999875 4443 23445678889999999986
No 7
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.31 E-value=0.063 Score=29.60 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHH
Q 042328 53 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAID 91 (156)
Q Consensus 53 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~ 91 (156)
+.....+|+.+|+++++++|...|.+.+...+...+.-.
T Consensus 12 d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~ee 50 (70)
T d1nexa1 12 DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEE 50 (70)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHH
Confidence 567889999999999999999999998877666555433
No 8
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=92.67 E-value=0.0086 Score=35.87 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=37.7
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchH-HHHHH
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEY-LREVC 76 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~-l~~~c 76 (156)
..+-+ |=+ |..|+.+|.|+.+|.+... +...+..++.-|++|+++. +.+.|
T Consensus 43 ~~~fi-DRd--p~~F~~IL~ylR~g~l~~p-~~~~~~~l~~Ea~yygi~~~~l~~C 94 (103)
T d3kvta_ 43 NEYFF-DRH--PGVFAQIINYYRSGKLHYP-TDVCGPLFEEELEFWGLDSNQVEPC 94 (103)
T ss_dssp TEEEE-CSC--TTTHHHHHHHHHHSCBCCC-SSSCHHHHHHHHHHHTCCGGGBCGG
T ss_pred CcEEe-cCC--HHHHHHHHHHHccCCcccc-cccCHHHHHHHHHHcCCCHHHHHHH
Confidence 44444 677 9999999999999998872 2234677888899999964 34444
No 9
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.61 E-value=0.043 Score=30.40 Aligned_cols=43 Identities=26% Similarity=0.204 Sum_probs=28.6
Q ss_pred CcCcHHHHHhh-cCCCCC--CCCCCCeeeCCCCCcHHHHHHHhhhHcc
Q 042328 1 AARSSILKDCL-DGKLLP--ISSTDGMTTMEVAEEGEVLKALVDFLYT 45 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~--~~~~~~i~l~~~~~~~~~~~~ll~~~Yt 45 (156)
|..|...+.|+ ....++ ......|.+++++ ..++..+++|++.
T Consensus 20 a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~--s~iL~kVieyc~~ 65 (72)
T d1nexa2 20 AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEH 65 (72)
T ss_dssp HTTSHHHHHTC-------------CEEECTTCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccccCCCCcccCCCcC--HHHHHHHHHHHHH
Confidence 35688899999 322222 1111569999999 9999999999854
No 10
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=92.15 E-value=0.016 Score=34.72 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=35.8
Q ss_pred CCeeeCCCCCcHHHHHHHhhhHccCCCCccchHHHHHHHHHhccccCchHH
Q 042328 22 DGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYL 72 (156)
Q Consensus 22 ~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~~ll~~A~~~~~~~l 72 (156)
..+-+ |=+ |..|+.+|+|+.+|.+.... ......++.-|++|+++.+
T Consensus 40 ~~~Fi-DRd--p~~F~~IL~ylR~G~l~~p~-~~~~~~l~~Ea~fygi~~~ 86 (105)
T d1nn7a_ 40 QQYFF-DRD--PDIFRHILNFYRTGKLHYPR-HECISAYDEELAFFGLIPE 86 (105)
T ss_dssp TEEEE-CSC--TTTHHHHHHHHHHSCBCCCT-TSCHHHHHHHHHHHTCCSC
T ss_pred CcEEE-eCC--HHHHHHHHHHHhcCccccCC-CccHHHHHHHHHHcCCCHH
Confidence 34444 567 99999999999999987632 2346778888999999763
No 11
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.40 E-value=0.13 Score=27.33 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=29.7
Q ss_pred CcCcHHHHHhh-cCCCCCCCCCCCeeeCCCCCcHHHHHHHhhhHcc
Q 042328 1 AARSSILKDCL-DGKLLPISSTDGMTTMEVAEEGEVLKALVDFLYT 45 (156)
Q Consensus 1 aa~S~yF~~mf-~~~~e~~~~~~~i~l~~~~~~~~~~~~ll~~~Yt 45 (156)
|..|...+.|+ +.. . ..|.+++++ ..++..+++|++.
T Consensus 20 a~~S~tI~~ml~~~~----~--~~Ipl~~V~--s~iL~kVieyc~~ 57 (61)
T d1fs1b2 20 AKQSVTIKTMLEDLG----M--DPVPLPNVN--AAILKKVIQWCTH 57 (61)
T ss_dssp GGTCHHHHHHHHHTC----C--SSEECTTCC--HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhcCC----C--CCcccCCcC--HHHHHHHHHHHHH
Confidence 45688899999 422 2 459999999 9999999999863
No 12
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.28 E-value=0.23 Score=29.94 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=28.8
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIVK 114 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~ 114 (156)
++.+++..++..|..++.+.|.+.|.+|+..
T Consensus 91 i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~ 121 (122)
T d1r29a_ 91 LREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121 (122)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 6788999999999999999999999999864
No 13
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.50 E-value=0.36 Score=29.07 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=28.0
Q ss_pred CChhhHHHHHHHHhhCCcHHHHHHHHHHHH
Q 042328 84 FQSSNAIDFLRIGYNYQLDELRDASLNFIV 113 (156)
Q Consensus 84 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~ 113 (156)
++.+|+..++..|..++.+.|.+.|.+|+.
T Consensus 89 l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~ 118 (121)
T d1buoa_ 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 678899999999999999999999999985
No 14
>d2cmyb1 g.2.4.1 (B:7-29) Trypsin inhibitor VhTI {Veronica hederifolia [TaxId: 202477]}
Probab=54.18 E-value=5.3 Score=16.32 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=12.5
Q ss_pred HHHHHhhCCcHHHHHHHHH
Q 042328 92 FLRIGYNYQLDELRDASLN 110 (156)
Q Consensus 92 ~l~~a~~~~~~~L~~~~~~ 110 (156)
++-+|.+++.++|...|++
T Consensus 3 vmcyaqrhsspellrrcld 21 (26)
T d2cmyb1 3 VMCYAQRHSSPELLRRCLD 21 (26)
T ss_dssp HHHHHBC--CCHHHHHHHH
T ss_pred eeehhhhcCCHHHHHHHHH
Confidence 4557788888888888764
No 15
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=42.64 E-value=14 Score=25.73 Aligned_cols=18 Identities=11% Similarity=-0.289 Sum_probs=11.9
Q ss_pred hhCcchHHHHHHHHhccc
Q 042328 130 SAFPHLCVLITRGCFMGA 147 (156)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~ 147 (156)
..+|+++.+++..+.+++
T Consensus 232 ~~~p~~i~~lL~~v~~~~ 249 (336)
T d1b89a_ 232 EFKPLLLNDLLMVLSPRL 249 (336)
T ss_dssp HHCGGGHHHHHHHHGGGC
T ss_pred HcCHHHHHHHHHHhccCC
Confidence 456777777777666544
No 16
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=33.13 E-value=10 Score=20.05 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.7
Q ss_pred eeCCCCCcHHHHHHHhhhHcc
Q 042328 25 TTMEVAEEGEVLKALVDFLYT 45 (156)
Q Consensus 25 ~l~~~~~~~~~~~~ll~~~Yt 45 (156)
-+.+++ |.+...+|+|.|.
T Consensus 15 GV~~ye--prV~~qlLef~yR 33 (68)
T d1tafa_ 15 NVQEYE--PRVVNQLLEFTFR 33 (68)
T ss_dssp TCCCBC--THHHHHHHHHHHH
T ss_pred CCcccc--HHHHHHHHHHHHH
Confidence 345788 9999999999985
No 17
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.02 E-value=12 Score=18.16 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHHHhcchhHHHHHhhCcchHHHHHHHHh
Q 042328 104 LRDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCF 144 (156)
Q Consensus 104 L~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~l~~~~~~~~~ 144 (156)
+.+.+..||.+|+.+-.+-++.-+..--.|.-+..+++...
T Consensus 4 ii~~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~~~ 44 (54)
T d1d5ya1 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVT 44 (54)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44555556665555444444433333334444444444444
No 18
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=26.13 E-value=31 Score=16.51 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHHHHhcchhHHHHHhhCcchHHHHHHHHh
Q 042328 105 RDASLNFIVKNVEELVFSDKYEESASAFPHLCVLITRGCF 144 (156)
Q Consensus 105 ~~~~~~~i~~~~~~v~~~~~f~~l~~~~~~l~~~~~~~~~ 144 (156)
...+.+||.+|+.+-..-++.-+..--.+.-+..++++..
T Consensus 5 i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~ 44 (54)
T d1bl0a1 5 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKET 44 (54)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3445555665555544444444444334444445554444
No 19
>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone decarboxylase, CMD {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.45 E-value=64 Score=18.41 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=42.8
Q ss_pred eCCCCCcHHHHHHHhhhHccCCCC---ccchHHHHHHHHHhccccCchHHHHHHHHHHhhhCChhhHHHHHHHHhhCC
Q 042328 26 TMEVAEEGEVLKALVDFLYTGSLP---REKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNAIDFLRIGYNYQ 100 (156)
Q Consensus 26 l~~~~~~~~~~~~ll~~~Yt~~~~---~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~a~~~~ 100 (156)
+.+++ |+-.+.+.+|.|+.-.. ++........+-.++-.=.-+.++.+...-+...++.+.+..++..+..|.
T Consensus 26 l~~~~--p~~~~~~~~~~fg~~~~r~~Ld~k~r~Li~la~l~a~g~~~~l~~H~~~Al~~G~t~eEi~e~~~~~~~y~ 101 (119)
T d2af7a1 26 LEDVA--PDLARFVAEFAYGDVYSRGVLDLKTRELLTLAALTVLRADDQLKSHVRGALNAGCSKDEIIEVMIQMAVYA 101 (119)
T ss_dssp HHHHC--HHHHHHHHHTCCCCCCTCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHhhC--HHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc
Confidence 44677 88888888988853222 111233333322222222345677777777777888888887776655543
No 20
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=23.14 E-value=18 Score=21.06 Aligned_cols=28 Identities=4% Similarity=-0.065 Sum_probs=22.5
Q ss_pred cchhHHHHHhhCcchHHHHHHHHhcccc
Q 042328 121 FSDKYEESASAFPHLCVLITRGCFMGAN 148 (156)
Q Consensus 121 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~ 148 (156)
..+.|..+...+|++...+++.+.+++.
T Consensus 100 ~~~~f~~l~~~~p~l~~~il~~~~~r~~ 127 (139)
T d3e5ua2 100 SEKSLRTVFRTDEDMIFEIFKNYLTKVA 127 (139)
T ss_dssp CHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5677888888899999888888876654
Done!