Query 042331
Match_columns 378
No_of_seqs 149 out of 662
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:38:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 3E-104 1E-108 784.1 24.7 378 1-378 1-378 (390)
2 2vgn_A DOM34; translation term 100.0 7.4E-99 3E-103 746.0 42.8 375 1-378 1-384 (386)
3 3j15_A Protein pelota; ribosom 100.0 1.3E-96 4E-101 723.1 21.2 355 1-371 1-357 (357)
4 3obw_A Protein pelota homolog; 100.0 2.5E-93 8.7E-98 699.4 38.2 343 1-371 21-364 (364)
5 3oby_A Protein pelota homolog; 100.0 5.4E-94 1.9E-98 700.7 32.6 345 1-375 1-347 (352)
6 3agj_B Protein pelota homolog; 100.0 4.7E-90 1.6E-94 677.7 40.0 349 1-372 3-353 (358)
7 2qi2_A Pelota, cell division p 100.0 1.4E-88 4.7E-93 663.0 27.8 341 1-374 1-342 (347)
8 3e20_C Eukaryotic peptide chai 100.0 2.1E-61 7.2E-66 484.2 -2.9 329 15-371 39-425 (441)
9 1dt9_A ERF1, protein (eukaryot 100.0 8.9E-60 3E-64 474.8 -3.6 325 29-371 35-418 (437)
10 3agk_A Peptide chain release f 100.0 1.9E-52 6.4E-57 413.7 20.4 268 75-372 88-372 (373)
11 1x52_A Pelota homolog, CGI-17; 100.0 4.5E-36 1.5E-40 250.7 7.4 121 256-376 3-123 (124)
12 3ir9_A Peptide chain release f 100.0 1.6E-32 5.3E-37 240.7 12.7 125 245-371 2-165 (166)
13 3j21_Z 50S ribosomal protein L 94.5 0.26 9E-06 38.3 9.3 71 289-366 13-86 (99)
14 3v7e_A Ribosome-associated pro 93.5 0.099 3.4E-06 39.4 4.9 61 289-356 9-69 (82)
15 2aif_A Ribosomal protein L7A; 93.1 0.32 1.1E-05 40.3 7.9 80 281-367 32-113 (135)
16 3on1_A BH2414 protein; structu 92.9 0.36 1.2E-05 37.7 7.5 71 289-366 16-87 (101)
17 3v7q_A Probable ribosomal prot 92.3 0.57 2E-05 36.5 8.0 71 289-366 17-88 (101)
18 3iz5_f 60S ribosomal protein L 92.0 0.51 1.7E-05 37.7 7.5 71 289-366 24-97 (112)
19 1xbi_A 50S ribosomal protein L 91.8 0.39 1.3E-05 38.8 6.7 85 277-368 16-102 (120)
20 2ale_A SNU13, NHP2/L7AE family 91.2 0.47 1.6E-05 39.2 6.7 72 289-366 30-103 (134)
21 4a18_G RPL30; ribosome, eukary 91.1 0.37 1.3E-05 37.9 5.6 74 289-369 20-96 (104)
22 1w41_A 50S ribosomal protein L 91.0 0.6 2.1E-05 36.3 6.8 74 290-370 15-91 (101)
23 3u5e_c L32, RP73, YL38, 60S ri 90.9 0.63 2.2E-05 36.6 6.9 74 288-368 19-95 (105)
24 3cpq_A 50S ribosomal protein L 90.8 0.52 1.8E-05 37.4 6.3 73 290-369 20-95 (110)
25 2lbw_A H/ACA ribonucleoprotein 89.6 0.73 2.5E-05 37.2 6.4 73 288-366 17-91 (121)
26 2xzm_U Ribosomal protein L7AE 89.5 0.79 2.7E-05 37.4 6.5 72 278-356 12-83 (126)
27 1vq8_F 50S ribosomal protein L 89.0 0.85 2.9E-05 36.7 6.3 74 289-368 27-102 (120)
28 3o85_A Ribosomal protein L7AE; 88.6 0.69 2.4E-05 37.5 5.5 74 289-368 29-104 (122)
29 2fc3_A 50S ribosomal protein L 87.5 1.1 3.9E-05 36.2 6.2 72 290-368 27-101 (124)
30 1rlg_A 50S ribosomal protein L 86.5 0.99 3.4E-05 36.3 5.3 73 290-368 26-100 (119)
31 1ipa_A RRMH, RNA 2'-O-ribose m 84.3 1.4 4.9E-05 40.7 6.0 77 290-375 28-109 (274)
32 2jnb_A NHP2-like protein 1; sp 83.6 0.5 1.7E-05 39.5 2.3 73 289-367 48-122 (144)
33 3vi6_A 60S ribosomal protein L 81.0 3 0.0001 33.8 6.0 73 289-368 25-100 (125)
34 1gz0_A Hypothetical tRNA/RRNA 80.7 2.5 8.6E-05 38.5 6.1 71 290-369 12-87 (253)
35 3nk6_A 23S rRNA methyltransfer 79.9 2.2 7.4E-05 39.5 5.4 69 290-369 34-106 (277)
36 3u5c_M 40S ribosomal protein S 76.7 1.8 6E-05 36.1 3.3 72 277-356 27-101 (143)
37 3jyw_G 60S ribosomal protein L 76.0 3.5 0.00012 32.9 4.8 78 286-370 20-99 (113)
38 1x7o_A Avirb, rRNA methyltrans 68.8 10 0.00034 35.1 6.9 74 290-374 40-118 (287)
39 2kg4_A Growth arrest and DNA-d 61.9 17 0.00058 30.8 6.3 78 278-356 23-102 (165)
40 2zkr_f 60S ribosomal protein L 58.8 4.7 0.00016 37.0 2.5 74 287-366 131-205 (266)
41 3izc_H 60S ribosomal protein R 55.4 13 0.00046 33.7 4.9 74 289-368 129-203 (256)
42 3nkl_A UDP-D-quinovosamine 4-d 54.0 32 0.0011 27.2 6.7 56 290-351 48-103 (141)
43 2i6d_A RNA methyltransferase, 44.1 30 0.001 31.3 5.4 70 290-375 27-100 (257)
44 3guv_A Site-specific recombina 39.7 47 0.0016 27.4 5.7 50 295-349 61-114 (167)
45 3g13_A Putative conjugative tr 38.5 37 0.0013 28.1 4.8 50 295-349 63-114 (169)
46 4a17_F RPL7A, 60S ribosomal pr 38.1 61 0.0021 29.3 6.3 62 288-356 121-183 (255)
47 3iz5_H 60S ribosomal protein L 34.3 51 0.0017 29.8 5.1 75 287-368 123-199 (258)
48 3gdz_A Arginyl-tRNA synthetase 33.3 27 0.00093 27.2 2.9 31 183-213 55-86 (109)
49 4dey_A Voltage-dependent L-typ 32.0 53 0.0018 31.1 5.1 97 199-309 139-254 (337)
50 1g6h_A High-affinity branched- 30.1 1.3E+02 0.0043 26.7 7.3 42 310-351 173-214 (257)
51 1f2t_B RAD50 ABC-ATPase; DNA d 28.6 71 0.0024 26.0 4.9 41 310-350 83-123 (148)
52 1oa8_A Ataxin-1; RNA binding, 28.3 1.2E+02 0.004 24.7 5.9 80 13-125 24-105 (133)
53 2pcj_A ABC transporter, lipopr 27.6 81 0.0028 27.4 5.3 41 309-349 159-199 (224)
54 1ii7_A MRE11 nuclease; RAD50, 27.4 1.6E+02 0.0054 27.0 7.7 53 302-354 35-89 (333)
55 4htl_A Beta-glucoside kinase; 26.5 91 0.0031 28.2 5.7 47 181-227 217-263 (297)
56 2gup_A ROK family protein; sug 25.1 88 0.003 28.0 5.3 46 182-227 208-253 (292)
57 2olj_A Amino acid ABC transpor 24.5 95 0.0033 27.9 5.3 40 310-349 179-218 (263)
58 2d2e_A SUFC protein; ABC-ATPas 24.4 1E+02 0.0036 27.2 5.5 58 292-351 144-204 (250)
59 1b0u_A Histidine permease; ABC 24.0 86 0.0029 28.0 4.9 41 309-349 172-212 (262)
60 1vpl_A ABC transporter, ATP-bi 23.0 99 0.0034 27.6 5.1 40 310-349 166-205 (256)
61 2yz2_A Putative ABC transporte 22.9 1.3E+02 0.0045 26.8 6.0 42 310-351 158-199 (266)
62 2qi9_C Vitamin B12 import ATP- 22.7 1.1E+02 0.0039 27.0 5.4 40 311-350 154-193 (249)
63 1ji0_A ABC transporter; ATP bi 22.3 89 0.003 27.5 4.6 41 310-350 159-199 (240)
64 3bvp_A INT, TP901-1 integrase; 21.7 69 0.0023 25.5 3.4 50 295-349 59-111 (138)
65 3mcp_A Glucokinase; structural 21.0 1.7E+02 0.0059 27.6 6.6 47 181-228 239-286 (366)
66 2nq2_C Hypothetical ABC transp 21.0 1.2E+02 0.0041 26.9 5.2 41 310-350 148-189 (253)
67 2yvt_A Hypothetical protein AQ 20.6 2.5E+02 0.0086 24.0 7.3 56 298-353 23-102 (260)
68 1sgw_A Putative ABC transporte 20.6 83 0.0028 27.3 3.9 42 310-351 153-194 (214)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-104 Score=784.10 Aligned_cols=378 Identities=40% Similarity=0.702 Sum_probs=331.3
Q ss_pred CeeeeeecCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCCCCe
Q 042331 1 MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSA 80 (378)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~~~~ 80 (378)
|||+++++.++++|+|+|.||++||||||||||++||.|+|+|+|||++++++|+++++|++++|+|+||+++|+|++++
T Consensus 1 Mkl~~~~~~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~~ 80 (390)
T 3mca_B 1 MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQ 80 (390)
T ss_dssp -------CBCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSSC
T ss_pred CccccccccCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCCE
Confidence 99999999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred EEEEEEEeecccccccccEEEEEEccCCcEEEEeccCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEEEE
Q 042331 81 LRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITR 160 (378)
Q Consensus 81 Lri~G~i~~~~~~v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~~~ 160 (378)
|||+|+|+.+|+++++|+|||++|+||+||+++|++||+|++++|++|++++.++.+++|+||+|.|+||+++++++.++
T Consensus 81 Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~ 160 (390)
T 3mca_B 81 LHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILR 160 (390)
T ss_dssp EEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEE
T ss_pred EEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhhcccchhhccCCcE
Q 042331 161 SRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI 240 (378)
Q Consensus 161 ~~i~~~ip~K~~~g~s~~e~~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~~~~~~~~~~~~ki 240 (378)
++++.++|+||++|++++++++++||++|++++.+++++.++++||||||||+|++|++||.+++.+..++.|+.++++|
T Consensus 161 ~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~ 240 (390)
T 3mca_B 161 QRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKF 240 (390)
T ss_dssp EEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGE
T ss_pred EEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeE
Confidence 99999999999886668999999999999999999999999999999999999999999999999888888888788899
Q ss_pred EEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCcccc
Q 042331 241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRN 320 (378)
Q Consensus 241 ~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~ 320 (378)
+++++|+|+.+|++|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++||
T Consensus 241 ~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~ 320 (390)
T 3mca_B 241 VILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRS 320 (390)
T ss_dssp EEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCC
T ss_pred EEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCccEEEEeecCCCCCCCCCC
Q 042331 321 FEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLEDIEM 378 (378)
Q Consensus 321 ~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~~~~~~~~ 378 (378)
++++.|+++++|++.|+++||+|+|||++|++|+||++|||||||||||||+|||+|+
T Consensus 321 ~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL~~lgGiaAiLRy~i~~~~~~~~ 378 (390)
T 3mca_B 321 SDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLSGIAAILTYPVDEEDISED 378 (390)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCEEEECTTSHHHHHHHHTTSEEEEBSSCCCCCCCCCC
T ss_pred CChhHHHHHHHHHHHHHhcCCEEEEECCCCCchhhhhcCCcEEEEEeccCCccchhhh
Confidence 9999999999999999999999999999999999999999999999999999988764
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=7.4e-99 Score=746.03 Aligned_cols=375 Identities=30% Similarity=0.534 Sum_probs=341.8
Q ss_pred Ceeeeee---cCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCC
Q 042331 1 MRIVRKD---LIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKE 77 (378)
Q Consensus 1 Mki~~~~---~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~ 77 (378)
|||++++ +++ ++|.|+|+||++||||||||||++||.|+|+|+||+++ +++|+ +++|++++|+|+||+++|+|+
T Consensus 1 Mki~~~~~~~~~~-~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-~~~g~-~~~r~~~~L~i~Ve~~~f~~~ 77 (386)
T 2vgn_A 1 MKVISLKKDSFNK-GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-DEAGK-KKSTDLVKLKIKVISEDFDMK 77 (386)
T ss_dssp CEEEEEEECSSCT-TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEETT
T ss_pred CeeeeeccccccC-CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-cCCCC-ceEEEEEEEEEEEEEEEecCC
Confidence 9999999 777 89999999999999999999999999999999999988 66777 899999999999999999999
Q ss_pred CCeEEEEEEEeecccc-----cccccEEEEEEccCCcEEEEeccCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEE
Q 042331 78 GSALRISGKNILENEH-----VKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLV 152 (378)
Q Consensus 78 ~~~Lri~G~i~~~~~~-----v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l 152 (378)
+++|||+|+|+.+|++ |++|+|||++|+||+||+++||+|++|++++|++|++++.++.+++|+||+|.|+||++
T Consensus 78 ~~~lri~G~i~~~~~~~~~~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l 157 (386)
T 2vgn_A 78 DEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLV 157 (386)
T ss_dssp TTEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEEEccCCccccccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEEEEEECCcEEEEEE
Confidence 9999999999999998 99999999999999999999999999999999999998878899999999999999999
Q ss_pred ecceEEEEEEEEeecCCCCCCchh-hhHHHHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhhcccc
Q 042331 153 GRSMTITRSRIETSIPRKHGPAVA-RYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLR 231 (378)
Q Consensus 153 ~~~~~~~~~~i~~~ip~K~~~g~s-~~e~~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~~~~~ 231 (378)
+++++.++++++.++|+||++||+ ++++++++||++|++++.+++++.++++||||||||+|++|++||.++++++.++
T Consensus 158 ~~~~~~~~~~i~~~iP~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~l~~~~~~~~~~ 237 (386)
T 2vgn_A 158 TSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNK 237 (386)
T ss_dssp CSSCEEEEEEEEC---------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHTTCH
T ss_pred ECCEEEEEEEEEecCCCCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999987754 4889999999999999999999899999999999999999999999999999999
Q ss_pred hhhccCCcEEEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEE
Q 042331 232 PIIANKSRIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTL 311 (378)
Q Consensus 232 ~~~~~~~ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tL 311 (378)
.|+.++++|+++++|+++.+|++|++++|+++++|+++++++|.++|++|+++++++++++|||+++|++|+++|||+||
T Consensus 238 ~~~~~~~ki~vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetL 317 (386)
T 2vgn_A 238 KILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYL 317 (386)
T ss_dssp HHHTTGGGEEEEECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEE
T ss_pred hhhhccCcEEEEECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEE
Confidence 99989899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCccEEEEeecCCCCCCCCCC
Q 042331 312 LITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLEDIEM 378 (378)
Q Consensus 312 LI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~~~~~~~~ 378 (378)
||+|+++||+|+..|+++.+|++.|+++||+|+|||++|++|+||++|||||||||||+|+|||+|+
T Consensus 318 LV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL~~lgGIAAiLRy~i~~~~~~~~ 384 (386)
T 2vgn_A 318 LLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEELDQLTGIACILKYPLPDLDEDDG 384 (386)
T ss_dssp EEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHHHHTTTEEEEESSCCCCSSCC--
T ss_pred EEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhHhccCcEEEEEecCCCccccccc
Confidence 9999999999999999988899999999999999999999999999999999999999999988764
No 3
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-96 Score=723.14 Aligned_cols=355 Identities=28% Similarity=0.449 Sum_probs=338.1
Q ss_pred CeeeeeecCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeeccCC-CCcceeEEEEEEEEEEEEeeccCCCC
Q 042331 1 MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKS-GGKDAERVKLKLEIKVEALDYDKEGS 79 (378)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~-g~~~~~r~~~~L~i~Ve~i~~~~~~~ 79 (378)
|||++++ +++|.|+|.||++||||||||||++||.|+|+|+|||++++++ ++++++|++++|+|+||+++|||+++
T Consensus 1 Mki~~~~---~~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~Rkv~~~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~ 77 (357)
T 3j15_A 1 MEILEEK---PKEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKVEVIPVFLGVQAEKINFHKFAN 77 (357)
T ss_dssp CCCEECS---TTSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCCCCCCCCSSSCCCCCCCCCCCCEEECSCEEEETTTT
T ss_pred CceeEec---CCCceEEEEECChHHHHHHHHhCCCCCEEEEEEEEEEEcCCCCcCCCccEEEEEEEEEEEEEEEecCCCC
Confidence 9999999 5899999999999999999999999999999999999987765 47788999999999999999999999
Q ss_pred eEEEEEEEeecc-cccccccEEEEEEccCCcEEEEeccCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEE
Q 042331 80 ALRISGKNILEN-EHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTI 158 (378)
Q Consensus 80 ~Lri~G~i~~~~-~~v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~ 158 (378)
+|||+|+|+++| +|+++|+|||++|+||+||+++||.|++|++++|++|++++.++.+++|+||+|.|+||+++++++.
T Consensus 78 ~Lri~G~i~~~~~~~v~~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~~~~ 157 (357)
T 3j15_A 78 QVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVE 157 (357)
T ss_dssp EEEECCBEEECCCSSCCCSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEEEEEeccccccccccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCCEEE
Confidence 999999999999 8999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred EEEEEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhhcccchhhccCC
Q 042331 159 TRSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKS 238 (378)
Q Consensus 159 ~~~~i~~~ip~K~~~g~s~~e~~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~~~~~~~~~~~~ 238 (378)
++++++.++||||+ ++.+++++++||++|++++.+++++.++++||||||||+|++|++||+++.++ .++
T Consensus 158 ~~~~i~~~ipkK~~--~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~~~~~~--------l~~ 227 (357)
T 3j15_A 158 ILNSIRHNLGGKRY--NTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPE--------LAK 227 (357)
T ss_dssp EEECCCCCSCSSSS--SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHHHHSCC--------SSC
T ss_pred EEEEEEecCCCCcc--cchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHHHhhHH--------hhC
Confidence 99999999999986 55688899999999999999999999999999999999999999999986533 356
Q ss_pred cEEEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCcc
Q 042331 239 RIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 318 (378)
Q Consensus 239 ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~ 318 (378)
+|+++++|+++.+|++|+|++|+++++++++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++
T Consensus 228 kvv~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~ 307 (357)
T 3j15_A 228 KVVIEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELL 307 (357)
T ss_dssp EECCCCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHH
T ss_pred eEEEEeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEecccc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCccEEEEeecCCC
Q 042331 319 RNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLP 371 (378)
Q Consensus 319 r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~ 371 (378)
| ++ .|+.+.+|++.|+++||+|+|||++|++|+||++|||||||||||+|
T Consensus 308 r--~~-~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL~~lgGiaAiLRy~ip 357 (357)
T 3j15_A 308 K--GE-LREKVEELMDAVRYSRGEVVVVSSEHEGGEKLKALGGLAALLRFRVK 357 (357)
T ss_dssp T--SS-CCHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHHCSEEEEESSCCC
T ss_pred c--cc-chHHHHHHHHHHHHcCCEEEEECCCCCcchhhhcCCcEEEEEeccCC
Confidence 8 33 57788889999999999999999999999999999999999999998
No 4
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.5e-93 Score=699.36 Aligned_cols=343 Identities=22% Similarity=0.314 Sum_probs=306.8
Q ss_pred CeeeeeecCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCCCCe
Q 042331 1 MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSA 80 (378)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~~~~ 80 (378)
|||++++ .++|.|+|.||++||||||||||++||.|+|+|+|||+. | ++++|++++|+|+||+++|||++++
T Consensus 21 Mki~~~~---~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~----~-~~~~r~~~~L~i~Ve~ief~~~~~~ 92 (364)
T 3obw_A 21 MRILEFD---EKRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGL----G-KESRRIPMTIILKVDYTEFQEFTNR 92 (364)
T ss_dssp ------C---CCCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEEECC--------CCCEEEEEEEEEEEEEEEETTTTE
T ss_pred cEEEEec---CCCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEEc----C-CceEEEEEEEEEEEEEEEecCCCCE
Confidence 9999988 489999999999999999999999999999999999974 3 3679999999999999999999999
Q ss_pred EEEEEEEeecc-cccccccEEEEEEccCCcEEEEeccCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEEE
Q 042331 81 LRISGKNILEN-EHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTIT 159 (378)
Q Consensus 81 Lri~G~i~~~~-~~v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~~ 159 (378)
|||+|+|+.+| +++++|+|||++|+||+||+++|+.|++|++++|+++++. ++.+++|+||+|.|+||+++++++.+
T Consensus 93 Lri~G~iv~~~~~~v~~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~~--~~~~~~vv~d~g~A~i~~l~~~~~~~ 170 (364)
T 3obw_A 93 LRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANK--RSRIIIALVDFDEYLIAIPFEQGIKI 170 (364)
T ss_dssp EEEEEEEEECCGGGCCTTCEEEEEECTTCEEEEECSCC----------------CCCEEEEEEETTEEEEEEECSSCEEC
T ss_pred EEEEEEEEeccccccccceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhCc--CCCEEEEEEECCcEEEEEEeCCEEEE
Confidence 99999999877 8999999999999999999999999999999999999984 45999999999999999999999999
Q ss_pred EEEEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhhcccchhhccCCc
Q 042331 160 RSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSR 239 (378)
Q Consensus 160 ~~~i~~~ip~K~~~g~s~~e~~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~~~~~~~~~~~~k 239 (378)
+++++.++|+|++ +++++||++|++++.+++++.++++||||||||+|++|++||+++++ +.+
T Consensus 171 ~~~i~~~iPkK~~-------~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~~~~----------~~~ 233 (364)
T 3obw_A 171 LSEKSLRPLNEEE-------GIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILK----------NKK 233 (364)
T ss_dssp CCEEECGGGCSST-------THHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHTTTC----------CSE
T ss_pred EEEEEeeCccchh-------HHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHHHhh----------cCe
Confidence 9999999999963 57899999999999999999999999999999999999999988653 246
Q ss_pred EEEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCccc
Q 042331 240 IVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 319 (378)
Q Consensus 240 i~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r 319 (378)
+.++++|+++.+|++|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++|
T Consensus 234 i~~vd~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r 313 (364)
T 3obw_A 234 IYIDSVSSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLS 313 (364)
T ss_dssp EEEECCSCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGS
T ss_pred EEEEeCCCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCcc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCccEEEEeecCCC
Q 042331 320 NFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLP 371 (378)
Q Consensus 320 ~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~ 371 (378)
+.++ .|+.+.+|++.|+++||+|+|||++|++|+||++|||||||||||+|
T Consensus 314 ~~d~-~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL~~lGGIAAiLRy~i~ 364 (364)
T 3obw_A 314 SDEQ-ERLTIERMLEDIENKRGEVILVPKESPIYFELKNLTGILAILRFRIN 364 (364)
T ss_dssp SCHH-HHHHHHHHHHHHHTTTCEEEEECTTSTTHHHHHHTTTEEEEESSCCC
T ss_pred cccc-hHHHHHHHHHHHHhcCCEEEEECCCCCCchhhhcCCcEEEEEeccCC
Confidence 9988 78889999999999999999999999999999999999999999997
No 5
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.4e-94 Score=700.66 Aligned_cols=345 Identities=26% Similarity=0.450 Sum_probs=301.6
Q ss_pred CeeeeeecCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCCCCe
Q 042331 1 MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSA 80 (378)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~~~~ 80 (378)
|||++++ .++++|.|+|.||++||||||||||++||.|+|+| |||+.++++++.+++|++++|+|+||+++|||++++
T Consensus 1 Mki~~~~-~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-Rkv~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~~~ 78 (352)
T 3oby_A 1 MQIVEEN-LRDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-KRASQSSDKLRSDKEMVTVRLGIEVEKVEFHRFANR 78 (352)
T ss_dssp CEEEEEC-CBTTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C---------------CCCCEEEEEEEEEECSSSSC
T ss_pred Cceeeec-cCCCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-EEEeccCCCCCcceEEEEEEEEEEEEEEEecCCCCE
Confidence 9999999 78899999999999999999999999999999999 999988777744559999999999999999999999
Q ss_pred EEEEEEEeecccccccccEEEEEEccCCcEEEEeccCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEEEE
Q 042331 81 LRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITR 160 (378)
Q Consensus 81 Lri~G~i~~~~~~v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~~~ 160 (378)
|||+|+|+.+|++ |+|||++|+||+||+++| +|++|++++|++|++++.++.+++|+||+|.|+||+++++++.++
T Consensus 79 Lri~G~i~~~~~~---G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~ 154 (352)
T 3oby_A 79 LRVSGKIVAGIEE---SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEI 154 (352)
T ss_dssp EEEEEEEEEC-------CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEE
T ss_pred EEEEEEEEecCCC---CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEE
Confidence 9999999999987 999999999999999999 899999999999999888889999999999999999999999999
Q ss_pred EEEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhhcccchhhccCCcE
Q 042331 161 SRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSRI 240 (378)
Q Consensus 161 ~~i~~~ip~K~~~g~s~~e~~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~~~~~~~~~~~~ki 240 (378)
++++.++|+|++ +++ ++||++|++++.++ ++++||||||||+|++|++||.++.++ .+++|
T Consensus 155 ~~i~~~ipkK~g--~~r-----~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l~~~~~~--------l~~kv 215 (352)
T 3oby_A 155 FEERMGYGKGMG--DSR-----KEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFLKERYPE--------MAKNA 215 (352)
T ss_dssp EEEEC----------CC-----CCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHHHHHCHH--------HHTTE
T ss_pred EEEeccCCCccc--hhH-----HHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHHHHHH--------hhCcE
Confidence 999999999863 322 79999999999998 799999999999999999999986533 24578
Q ss_pred EEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCcccc
Q 042331 241 VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRN 320 (378)
Q Consensus 241 ~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~ 320 (378)
+++++|+++.+|++|+|++|+++++|+++++++|.++|++|++++++| ++||||+++|.+|+++|||+||||+|+++|+
T Consensus 216 v~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~ 294 (352)
T 3oby_A 216 VVVDVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEFLLE 294 (352)
T ss_dssp EECCCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHHH
T ss_pred EEEECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccchhc
Confidence 899999999999999999999999999999999999999999999998 9999999999999999999999999999985
Q ss_pred chhHhH--HHHHHHHHHHHccCCEEEEECCCCCcccccccCccEEEEeecCCCCCCC
Q 042331 321 FEIATR--KKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLED 375 (378)
Q Consensus 321 ~d~~~r--~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~~~~~ 375 (378)
. | +.+.+|++.|+++||+|+|||++|++|+||++|||||||||||+|+|+-
T Consensus 295 ~----r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL~~lGGIaAiLRy~~~~~~~ 347 (352)
T 3oby_A 295 E----REKWDVDGLLREVEESGGKVVIMSTEFEPGKRLMSLGGIAALLRFNVKGLEH 347 (352)
T ss_dssp H----TTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHHHHTTSEEEEESSCCCC---
T ss_pred c----cchHHHHHHHHHHHHcCCEEEEEcCCCcchhHHhcCCCEEEEEecCCccccc
Confidence 3 3 3688899999999999999999999999999999999999999999863
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=4.7e-90 Score=677.65 Aligned_cols=349 Identities=24% Similarity=0.352 Sum_probs=332.5
Q ss_pred CeeeeeecCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCCCCe
Q 042331 1 MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSA 80 (378)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~~~~ 80 (378)
|||+++++ ++|.|+|.||++||||||||||++||.|+|+|+|||++ |+.+++|++++|+|+||+++|||+.+.
T Consensus 3 Mki~~~~~---~~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~~~~~r~~~~l~i~Ve~~~f~~~~~~ 75 (358)
T 3agj_B 3 MRVEVLDN---KRRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GSGRKERVVMTLRIRLDSIEFQPFTGK 75 (358)
T ss_dssp CEEEECSS---SSCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SSSCCEEEEEEEEEEEEEEEECTTSCE
T ss_pred CEEEEeec---cCCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CCCccEEEEEEEEEEEEEEEcCCCCCE
Confidence 99999997 38999999999999999999999999999999999975 667899999999999999999999999
Q ss_pred EEEEEEEeecc-cccccccEEEEEEccCCcEEEEecc-CChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEE
Q 042331 81 LRISGKNILEN-EHVKIGAFHSLEIELHRPFVLTKDV-WDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTI 158 (378)
Q Consensus 81 Lri~G~i~~~~-~~v~~G~~ht~~l~~~~~v~i~k~~-wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~ 158 (378)
|||+|+|+.+| +||++|+|||++|+||+||+++|++ |++|++++|++| + .++.+++|+||++.|+||+++++++.
T Consensus 76 Lri~G~i~~~~~~~v~~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~-~--~~~~~~~vvvd~~~A~i~~l~~~~~~ 152 (358)
T 3agj_B 76 LRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG-R--ARGTAVIAAVDYDEFALAVLAGHGMK 152 (358)
T ss_dssp EEEEEEEEECCGGGCCTTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC-C--CCCEEEEEEECSSEEEEEEEESSCEE
T ss_pred EEEEEEEccCCCcccccccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh-C--cCCCEEEEEEECCcEEEEEEeCCEEE
Confidence 99999999999 7999999999999999999999987 999999999999 4 55699999999999999999999999
Q ss_pred EEEEEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhhcccchhhccCC
Q 042331 159 TRSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKS 238 (378)
Q Consensus 159 ~~~~i~~~ip~K~~~g~s~~e~~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~~~~~~~~~~~~ 238 (378)
.+++++.++|+|| | +++++.+++||++|++++.+++++.++++||||||||+|++|.+||.++++++
T Consensus 153 ~~~~i~~~vpkK~--g-~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~~~~~~~---------- 219 (358)
T 3agj_B 153 ILEDTSARLPGKD--D-PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPSL---------- 219 (358)
T ss_dssp EEEEEECCCCCTT--S-TTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHHHHSTTS----------
T ss_pred EEEEEEecCCCCC--c-hHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhc----------
Confidence 9999999999998 3 34888999999999999999998889999999999999999999999998642
Q ss_pred cEEEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCcc
Q 042331 239 RIVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 318 (378)
Q Consensus 239 ki~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~ 318 (378)
++.++++|+++.+|++|++++++++++++++++++|.++|++|++++++++++||||+++|.+|+++|||+||||+|+++
T Consensus 220 ~i~~v~~s~g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~ 299 (358)
T 3agj_B 220 KVATVDTSMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLL 299 (358)
T ss_dssp EEEEEECSCCHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHH
T ss_pred eEEEEEcCCCCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCccEEEEeecCCCC
Q 042331 319 RNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPD 372 (378)
Q Consensus 319 r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~~ 372 (378)
||++++.|+.+.+|++.|+++||+|+|||++|++|+||++|||||||||||+|+
T Consensus 300 r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL~~~gGIaAiLRy~i~~ 353 (358)
T 3agj_B 300 HSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERLVSFGGVIALLRYPVPQ 353 (358)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHHGGGTTEEEEESSCCCG
T ss_pred cCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhhhcCCcEEEEEeccCch
Confidence 998888888899999999999999999999999999999999999999999973
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=1.4e-88 Score=662.97 Aligned_cols=341 Identities=25% Similarity=0.427 Sum_probs=297.3
Q ss_pred CeeeeeecCCCCCceEEEecCChhhHHHHHHhhcCCCeEEEEEEEeEeecc-CCCCcceeEEEEEEEEEEEEeeccCCCC
Q 042331 1 MRIVRKDLIPNGPGSVKMIPVDSDDLWFAYNLVNAGDSVLAVTVRKVVRQT-KSGGKDAERVKLKLEIKVEALDYDKEGS 79 (378)
Q Consensus 1 Mki~~~~~~~~~~g~v~l~~e~~dDlw~Lynli~~gD~V~~~t~Rkv~~~~-~~g~~~~~r~~~~L~i~Ve~i~~~~~~~ 79 (378)
|||+++++ ++|.|+|.||++||||||||||++||.|+|+|+|||++++ .+|+.+++|++++|+|+||+++|||+++
T Consensus 1 Mki~~~~~---~~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g~~~~er~~~~l~i~Ve~v~f~~~~~ 77 (347)
T 2qi2_A 1 MRILEEDL---KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKVEKIEFQDFDN 77 (347)
T ss_dssp CEEEEEET---TTTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEEECCTTCSCEEE
T ss_pred CceeEeec---cCcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCCCCccEEEEEEEEEEEEEEEccCCCC
Confidence 99999997 3899999999999999999999999999999999998854 5567789999999999999999999999
Q ss_pred eEEEEEEEeecccccccccEEEEEEccCCcEEEEeccCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEEE
Q 042331 80 ALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTIT 159 (378)
Q Consensus 80 ~Lri~G~i~~~~~~v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~~ 159 (378)
+||++|.++.+|++ ++|+|||++++||+||+++| +|++|++++|++|++++.++.+++|+||++.|+||+++++++.+
T Consensus 78 ~Lri~G~vv~~~~~-~~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~ 155 (347)
T 2qi2_A 78 RLRILGTVIEGPED-TKGKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQ 155 (347)
T ss_dssp EEEECC----------CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEEE
T ss_pred EEecceEEEEcCCC-CCccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEEE
Confidence 99999999999988 78999999999999999999 99999999999999986667999999999999999999999999
Q ss_pred EEEEEeecCCCCCCchhhhHHHHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhhcccchhhccCCc
Q 042331 160 RSRIETSIPRKHGPAVARYESALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAERTQLRPIIANKSR 239 (378)
Q Consensus 160 ~~~i~~~ip~K~~~g~s~~e~~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~~~~~~~~~~~~k 239 (378)
+++++.++|+|++ +|++.+ ++||++|++++.++ + ++||||||||+|++|.+||.++++ ++
T Consensus 156 ~~~i~~~~~Kk~~--~s~f~r--~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l~~~~~-----------~~ 215 (347)
T 2qi2_A 156 VGTVYSGRSGKYA--EGNYSE--ASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYCAQRGV-----------NV 215 (347)
T ss_dssp EEEEECCHHHHC------CCH--HHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHHHHTSC-----------CC
T ss_pred EEEEeecCCCccc--cchhhH--HHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHHHHhhc-----------ce
Confidence 9999999888775 343333 89999999999998 2 899999999999999999998874 24
Q ss_pred EEEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCccc
Q 042331 240 IVIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 319 (378)
Q Consensus 240 i~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r 319 (378)
++++++|+++.+|++|++++++++++|+++++++|.++|++|+++++++ ++|||+++|++|+++|||++|||+|+++|
T Consensus 216 i~~v~~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~r 293 (347)
T 2qi2_A 216 IGSFPANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMFR 293 (347)
T ss_dssp SCCEECSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHT
T ss_pred EEEEecCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEeccccc
Confidence 5678999999999999999999999999999999999999999999998 99999999999999999999999999997
Q ss_pred cchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCccEEEEeecCCCCCC
Q 042331 320 NFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLE 374 (378)
Q Consensus 320 ~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~~~~ 374 (378)
|+++.+|++.|+++||+|+|||++|++|+||++|||||||||||+|+|-
T Consensus 294 ------r~~~~~L~e~~~~~G~~V~ivs~~~e~G~qL~~lGGIAaiLRy~~~~~~ 342 (347)
T 2qi2_A 294 ------TEDGRRSLSIAQTVGTRIHIVSVSNDPGQIVKKFGGFAGILRYRVQLEH 342 (347)
T ss_dssp ------SHHHHHHHHHHHHHTCEEEEECTTSHHHHHHHHTTSEEEEECSCC----
T ss_pred ------chhHHHHHHHHHHcCCEEEEECCCCcchHHHHhcCCEEEEEeccchhhh
Confidence 5568889999999999999999999999999999999999999999763
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-61 Score=484.16 Aligned_cols=329 Identities=20% Similarity=0.254 Sum_probs=175.6
Q ss_pred eEEEecCCh----hhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCCCCeEEEEEEEeec
Q 042331 15 SVKMIPVDS----DDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSALRISGKNILE 90 (378)
Q Consensus 15 ~v~l~~e~~----dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~~~~Lri~G~i~~~ 90 (378)
-|+|.+--. |-.-+|.+......+|+++.+|.-. +|+.++.+.+++|..+| |.+|.++++|.|+.+
T Consensus 39 lisl~ipp~~~i~~v~~~l~~e~~~asnIksk~~r~~v----~~ai~s~~~rlkl~~~v------p~~g~v~~~G~~~~e 108 (441)
T 3e20_C 39 MITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSV----LSAITSTRERLKLYNKV------PDNGLVIYCGEVIME 108 (441)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHTTCCCCHHHHHHH----HHHHHHHHHHHTTCSSC------TTSCCEEEEEEECCG
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHhhhhhhhhhhhccch----hhHHHHHHHHHhhhccC------CCCCEEEEeceeecc
Confidence 466554322 3344577888889999998877743 45567777778777666 999999999999976
Q ss_pred ccccccccEEEEEEccCCcEEEEec-cCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEEEEEEEEeecCC
Q 042331 91 NEHVKIGAFHSLEIELHRPFVLTKD-VWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPR 169 (378)
Q Consensus 91 ~~~v~~G~~ht~~l~~~~~v~i~k~-~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~~~~~i~~~ip~ 169 (378)
+ +.|+|||++|+||+||+++|| +|++|++++|++|++++. .+++|+||+++|.++++.++++..+++++.++|+
T Consensus 109 ~---~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~--~~gvVvvD~~ga~i~~l~g~~~evl~~i~~~vPk 183 (441)
T 3e20_C 109 G---NKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQ--RFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPK 183 (441)
T ss_dssp G---GCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC----------------------------------------
T ss_pred C---CceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccC--cEEEEEEecCCeEEEEEecCeEEEEEEEEecCCC
Confidence 5 458999999999999999999 799999999999999876 8999999999999999999999999999999999
Q ss_pred CCCC-chhh------hHHHHHHHHHHHHHHHHhccc---ccCccEEEEECCccCHHHHHH--HHHHHHhhcccchhhccC
Q 042331 170 KHGP-AVAR------YESALNKFFDSVLHAFLKHVD---FNVVRCAVIASPGFTKDQFHR--YLLLEAERTQLRPIIANK 237 (378)
Q Consensus 170 K~~~-g~s~------~e~~~~~f~~~v~~~l~~~~~---~~~~~~iiIaGpg~~k~~f~~--~l~~~~~~~~~~~~~~~~ 237 (378)
||++ |||+ +++++++||++|++.+.+++. +.++++||||||||+|++|++ |+...+++
T Consensus 184 K~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~~---------- 253 (441)
T 3e20_C 184 KHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQS---------- 253 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCHHHHh----------
Confidence 9766 4553 677889999999999999986 568999999999999999998 77655432
Q ss_pred CcE-EEEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecC
Q 042331 238 SRI-VIVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDD 316 (378)
Q Consensus 238 ~ki-~~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~ 316 (378)
++ .++++|+|+++|++|+|++ ++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+
T Consensus 254 -kvv~~vdvs~gg~~Gl~EvL~~--~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~ 330 (441)
T 3e20_C 254 -RIIKTVDVSYGGDAGFNQAIEL--AADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFAD 330 (441)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETT
T ss_pred -heEEEEECCCCCccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecc
Confidence 33 4789999999999999998 4899999999999999999999999999999999999999999999999999999
Q ss_pred cc------ccc------------------------h--------hHhHHHHHH-HHHHHHccCCEEEEECCCCCccccc-
Q 042331 317 LF------RNF------------------------E--------IATRKKYVD-LVNSVKDSGGTAHIFSSMHFSGEQL- 356 (378)
Q Consensus 317 l~------r~~------------------------d--------~~~r~~~~~-lve~v~~~g~~V~ivs~~~~~G~~L- 356 (378)
+. ||+ | +.+++++++ |++.|+++||+|+|||+.|++|+||
T Consensus 331 l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG~ql~ 410 (441)
T 3e20_C 331 LDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQFV 410 (441)
T ss_dssp CCCEEC----------CCEECSCTTTCCC-----------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHHHHHH
T ss_pred cccceeEEECCCCceEEEecCccccccccccccccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHHHHHH
Confidence 95 552 1 123456777 9999999999999999999999998
Q ss_pred ccCccEEEEeecCCC
Q 042331 357 GQLTGVAAILRFPLP 371 (378)
Q Consensus 357 ~~lgGIaAiLRy~i~ 371 (378)
++|||||||||||++
T Consensus 411 ~~fgGIaaiLRy~~~ 425 (441)
T 3e20_C 411 KGFGGIGAVMRYQLD 425 (441)
T ss_dssp HTSTTEEEECSSCCC
T ss_pred HcCCcEEEEEeccCC
Confidence 899999999999997
No 9
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=8.9e-60 Score=474.81 Aligned_cols=325 Identities=15% Similarity=0.196 Sum_probs=276.1
Q ss_pred HHHhhcCCCeEEEEEEEeEeecc--CCCCcceeEEEEEEEEEEEEeec-----cCCCCeEEEEEEEeecccccccccEEE
Q 042331 29 AYNLVNAGDSVLAVTVRKVVRQT--KSGGKDAERVKLKLEIKVEALDY-----DKEGSALRISGKNILENEHVKIGAFHS 101 (378)
Q Consensus 29 Lynli~~gD~V~~~t~Rkv~~~~--~~g~~~~~r~~~~L~i~Ve~i~~-----~~~~~~Lri~G~i~~~~~~v~~G~~ht 101 (378)
+|++|.+||.|.+.|.|++...+ +.-..+..|..+.++|.++..+| .|.+|.+.++|.++.++. .++|||
T Consensus 35 isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~~~~~~~Glvvf~g~~~~~~g---~~~~~t 111 (437)
T 1dt9_A 35 ISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEG---KEKKVN 111 (437)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEEEECGGG---CEEEEE
T ss_pred EEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccCCCCCCCeEEEEeCccccCCC---ceEEEE
Confidence 46788899999999999975321 11123667888999999999999 788999999999887553 268999
Q ss_pred EEEccCCcE--EEEeccCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEecceEEEEEEEEeecCCCCCC-chhh-
Q 042331 102 LEIELHRPF--VLTKDVWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVGRSMTITRSRIETSIPRKHGP-AVAR- 177 (378)
Q Consensus 102 ~~l~~~~~v--~i~k~~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-g~s~- 177 (378)
++++||+|| +++| +|++|++++|.+++++.. ++++|+||++.|+||+++++++..+++++.++|+||++ |||+
T Consensus 112 l~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~~~~--~~~vvvvd~~~A~i~~~~~~~~~~~~~i~~~~P~K~~~Gg~s~~ 188 (437)
T 1dt9_A 112 IDFEPFKPINTSLYL-CDNKFHTEALTALLSDDS--KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSAL 188 (437)
T ss_dssp EEECCSCCTTCCEEE-EESSCCCHHHHHHCCCCC--EEEEEECCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCSCSH
T ss_pred EEecCCCCCceeEEE-ecChhhHHHHHHHhcCCC--CEEEEEEeCCceEEEEEcCcEEEEEEEEEecCCCCCcCCCcchH
Confidence 999999999 5666 799999999999999755 99999999999999999999999999999999999876 4552
Q ss_pred -----hHHHHHHHHHHHHHHHHhcccc---cCccEEEEECCccCHHHHHH--HHHHHHhhcccchhhccCCcEEEEEcCC
Q 042331 178 -----YESALNKFFDSVLHAFLKHVDF---NVVRCAVIASPGFTKDQFHR--YLLLEAERTQLRPIIANKSRIVIVHTSS 247 (378)
Q Consensus 178 -----~e~~~~~f~~~v~~~l~~~~~~---~~~~~iiIaGpg~~k~~f~~--~l~~~~~~~~~~~~~~~~~ki~~~~~s~ 247 (378)
+++..++||++|++++.+++.+ .++++||||||||+|++|.+ +++..+.. ..+.++++|+
T Consensus 189 Rf~R~ree~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~l~~~L~~----------~vv~~v~~s~ 258 (437)
T 1dt9_A 189 RFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQS----------KVLKLVDISY 258 (437)
T ss_dssp HHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSSSCTTTTT----------TCCCEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhccChhhHh----------cEEEEEecCC
Confidence 3667789999999999999854 37999999999999999976 33322211 1335689999
Q ss_pred CccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCcc------ccc
Q 042331 248 GYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLF------RNF 321 (378)
Q Consensus 248 ~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~------r~~ 321 (378)
++.+|++|++++. +++|+++++++|.++|++|+++++++++++|||+++|++|+++|||+||||+|+++ ||+
T Consensus 259 g~~~gl~E~l~~~--~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~ 336 (437)
T 1dt9_A 259 GGENGFNQAIELS--TEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQ 336 (437)
T ss_dssp CTTHHHHHHHHHH--SSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---
T ss_pred CccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcC
Confidence 9999999999984 99999999999999999999999999999999999999999999999999999998 554
Q ss_pred h------------------------------hHhHHHHHH-HHHHHHccCCEEEEECCCCCcccc-cccCccEEEEeecC
Q 042331 322 E------------------------------IATRKKYVD-LVNSVKDSGGTAHIFSSMHFSGEQ-LGQLTGVAAILRFP 369 (378)
Q Consensus 322 d------------------------------~~~r~~~~~-lve~v~~~g~~V~ivs~~~~~G~~-L~~lgGIaAiLRy~ 369 (378)
. ...+.++++ |++.|+++||+|+|||++|++|+| |++|||||||||||
T Consensus 337 ~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~G~q~l~~~gGIaAiLRy~ 416 (437)
T 1dt9_A 337 GTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYR 416 (437)
T ss_dssp ------CCCBCTTCSSCCCCCC-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHHHHHTTTTEEEECSSC
T ss_pred CCCceeeeeeccccccccccccCcccCccccccccccHHHHHHHHHHHcCCEEEEECCCChhHHHHHHhCCCEEEEEecc
Confidence 1 011224455 999999999999999999999999 99999999999999
Q ss_pred CC
Q 042331 370 LP 371 (378)
Q Consensus 370 i~ 371 (378)
++
T Consensus 417 i~ 418 (437)
T 1dt9_A 417 VD 418 (437)
T ss_dssp CC
T ss_pred cc
Confidence 98
No 10
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=1.9e-52 Score=413.75 Aligned_cols=268 Identities=21% Similarity=0.320 Sum_probs=231.5
Q ss_pred cCCCCeEEEEEEEeecccccccccEEEEEEccCCcEEEEec-cCChhhHHHHHHhhcccCCCcEEEEEEECCeeEEEEEe
Q 042331 75 DKEGSALRISGKNILENEHVKIGAFHSLEIELHRPFVLTKD-VWDSVALDTLHQASDSAATADLAVVLMQEGLANIFLVG 153 (378)
Q Consensus 75 ~~~~~~Lri~G~i~~~~~~v~~G~~ht~~l~~~~~v~i~k~-~wd~~~l~~L~~a~~~~~~~~~~~vvvd~g~A~i~~l~ 153 (378)
.|.+|..-++|... +.|+|||++++||+||++.|+ +|++|++++|.+++++.. .+++|+||++.|+||+++
T Consensus 88 ~~~~Gl~vf~~~~~------~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~--~~~vvvvd~~~A~i~~~~ 159 (373)
T 3agk_A 88 TPPNGLVLFCGEDM------STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNN--AIGIIIVERDQATIGLLK 159 (373)
T ss_dssp CCTTCEEEEEEC-----------CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSC--EEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEEecCC------CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCCC--CEEEEEEeCCcEEEEEEe
Confidence 67778777787653 468999999999999999998 567999999999999864 999999999999999999
Q ss_pred cceEEEEEEEEeecCCCCCCc-hhh------hHHHHHHHHHHHHHHHHhccc----ccCccEEEEECCccCHHHHH--HH
Q 042331 154 RSMTITRSRIETSIPRKHGPA-VAR------YESALNKFFDSVLHAFLKHVD----FNVVRCAVIASPGFTKDQFH--RY 220 (378)
Q Consensus 154 ~~~~~~~~~i~~~ip~K~~~g-~s~------~e~~~~~f~~~v~~~l~~~~~----~~~~~~iiIaGpg~~k~~f~--~~ 220 (378)
++++.++.+++.++|+||++| +|+ +++.+++||++|++++.+++. +.++++|||||||+++++|. +|
T Consensus 160 ~~~~~~~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~ 239 (373)
T 3agk_A 160 GARLEVLKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNY 239 (373)
T ss_dssp TTEEEEEEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSC
T ss_pred CcEEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhh
Confidence 999999999999999998764 553 678899999999999999983 47899999999999999999 89
Q ss_pred HHHHHhhcccchhhccCCcEE--EEEcCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHH
Q 042331 221 LLLEAERTQLRPIIANKSRIV--IVHTSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKH 298 (378)
Q Consensus 221 l~~~~~~~~~~~~~~~~~ki~--~~~~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~ 298 (378)
|++++.+ +++ ++++|+++.+|++|++++. +++++++++++|.++|++|+++++++++++|||+++
T Consensus 240 l~~~l~~-----------~vi~~~v~~s~~~~~g~~E~l~~~--~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~e 306 (373)
T 3agk_A 240 LDYRLKK-----------ILAPELVDVAYQGLQGLKEAVMKA--EKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKD 306 (373)
T ss_dssp SCHHHHT-----------TBCSSCEECCCCHHHHHHHHHHHC--TTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHH
T ss_pred cChHhhh-----------CceeEEEccCCCccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHH
Confidence 9887743 445 6899999999999999974 999999999999999999999999999999999999
Q ss_pred HHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccc-ccCccEEEEeecCCCC
Q 042331 299 VEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQL-GQLTGVAAILRFPLPD 372 (378)
Q Consensus 299 V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L-~~lgGIaAiLRy~i~~ 372 (378)
|++|+++|||+||||+|+ | ..+.+|++.|+++||+|+|||++|++|+|| ++|||||||||||++.
T Consensus 307 V~~Al~~GaVetLlv~d~--r-------d~~~~L~e~a~~~G~~V~ivs~~~~~g~ql~~~~gGIaAiLRy~~~~ 372 (373)
T 3agk_A 307 VEAALEMGAVKTLLIHES--R-------EDLEEWVEKAKSSGAQVIVVPESLAEAEWFLKTFGGLAGILRFRIST 372 (373)
T ss_dssp HHHHHHTTCEEEEEEETT--C-------TTHHHHHHHHTTTTCEEEEECTTSTTHHHHHHHHTTEEEEECC----
T ss_pred HHHHHHhCCccEEEEeCC--h-------hHHHHHHHHHHHcCCEEEEECCCCccHHHHHHhCCcEEEEEeccCCC
Confidence 999999999999999998 3 346779999999999999999999999999 9999999999999975
No 11
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=100.00 E-value=4.5e-36 Score=250.74 Aligned_cols=121 Identities=55% Similarity=0.846 Sum_probs=117.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHH
Q 042331 256 VLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNS 335 (378)
Q Consensus 256 vl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~ 335 (378)
+|++|+++++|+++++++|.++|++|++++++|++++|||+++|.+|+++|||+||||+|+++||+|+..|+++++|++.
T Consensus 3 ~l~~~~v~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~el~e~ 82 (124)
T 1x52_A 3 SGSSGTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDS 82 (124)
T ss_dssp SCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHccCCEEEEECCCCCcccccccCccEEEEeecCCCCCCCC
Q 042331 336 VKDSGGTAHIFSSMHFSGEQLGQLTGVAAILRFPLPDLEDI 376 (378)
Q Consensus 336 v~~~g~~V~ivs~~~~~G~~L~~lgGIaAiLRy~i~~~~~~ 376 (378)
|+++||+|+|||++|++|+||++|||||||||||+|++++.
T Consensus 83 ~~~~G~~V~ivs~~~~~G~qL~~~gGIaAiLRy~i~~~~~~ 123 (124)
T 1x52_A 83 VKENAGTVRIFSSLHVSGEQLSQLTGVAAILRFPVPSGPSS 123 (124)
T ss_dssp HHHTTCEEEEECSSSHHHHHHHTTTTEEEEESSCCTTCSCC
T ss_pred HHHcCCEEEEECCCCccHHHHhcCCCEEEEEecCCcccccC
Confidence 99999999999999999999999999999999999988764
No 12
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=99.98 E-value=1.6e-32 Score=240.65 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=114.3
Q ss_pred cCCCccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCccccc---
Q 042331 245 TSSGYKHSLREVLDASNVMNLIKETKAAQEVKVLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNF--- 321 (378)
Q Consensus 245 ~s~~~~~gl~Evl~~~~v~~~l~~~~~~~e~~~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~--- 321 (378)
.||++++|++|++++. +++|+++++++|.++|++|++++++|++++|||+++|++|+++|||+||||+|+++++.
T Consensus 2 ~sy~ge~Gl~E~i~~~--~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~ 79 (166)
T 3ir9_A 2 NAYTDESGLSELVNAA--GEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTT 79 (166)
T ss_dssp -CCSCCSSHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEE
T ss_pred CCcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEE
Confidence 4789999999999986 99999999999999999999999999999999999999999999999999999998651
Q ss_pred ---------------hh-------------------HhHHHHH-HHHHHHHccCCEEEEECCCCCccccc-ccCccEEEE
Q 042331 322 ---------------EI-------------------ATRKKYV-DLVNSVKDSGGTAHIFSSMHFSGEQL-GQLTGVAAI 365 (378)
Q Consensus 322 ---------------d~-------------------~~r~~~~-~lve~v~~~g~~V~ivs~~~~~G~~L-~~lgGIaAi 365 (378)
++ ..|++++ .|++.|+++||+|+|||++|++|+|| ++|||||||
T Consensus 80 ~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~L~e~~~~~G~~v~ivs~~~eeG~ql~~~fGGIaai 159 (166)
T 3ir9_A 80 KCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDEFSELADKSNAKVVFVSTDFDEGSQLMNAFGGIAAI 159 (166)
T ss_dssp EESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEHHHHHHHHHHHTTCEEEEECSCSHHHHHHHHTSTTEEEE
T ss_pred ECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHHHHHHHHHHHhcCCEEEEECCCChhHHHHHHcCCCEEEE
Confidence 11 1255666 59999999999999999999999999 999999999
Q ss_pred eecCCC
Q 042331 366 LRFPLP 371 (378)
Q Consensus 366 LRy~i~ 371 (378)
||||+.
T Consensus 160 LRy~i~ 165 (166)
T 3ir9_A 160 LRYNTG 165 (166)
T ss_dssp ESSCCC
T ss_pred EeccCC
Confidence 999985
No 13
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.47 E-value=0.26 Score=38.33 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=53.0
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEE-CCCCCcccccccCc--cEEEE
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIF-SSMHFSGEQLGQLT--GVAAI 365 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~iv-s~~~~~G~~L~~lg--GIaAi 365 (378)
.++.+.|.++|.+|++.|.+.-+++..+- + +..+ ..+...++..+..++++ .+..+.|.-+-.-- .++||
T Consensus 13 agk~v~G~~~v~kai~~gka~lViiA~D~---~-~~~~---~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI 85 (99)
T 3j21_Z 13 TGKVVLGSNETIRLAKTGGAKLIIVAKNA---P-KEIK---DDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAI 85 (99)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEECCC---C-HHHH---HHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSEEEEE
T ss_pred hCCEeECHHHHHHHHHcCCccEEEEeCCC---C-HHHH---HHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEEEEEE
Confidence 48999999999999999999999999983 1 2222 23556678899998777 88888877764432 34565
Q ss_pred e
Q 042331 366 L 366 (378)
Q Consensus 366 L 366 (378)
+
T Consensus 86 ~ 86 (99)
T 3j21_Z 86 V 86 (99)
T ss_dssp S
T ss_pred E
Confidence 4
No 14
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=93.50 E-value=0.099 Score=39.42 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=50.5
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccc
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQL 356 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L 356 (378)
.++.+.|.++|.+|++.|.++-++|..+.- + .-...+...++..|..++++++..+.|.-.
T Consensus 9 agk~~~G~~~v~kai~~gkaklViiA~D~~----~---~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~ 69 (82)
T 3v7e_A 9 AKSIIIGTKQTVKALKRGSVKEVVVAKDAD----P---ILTSSVVSLAEDQGISVSMVESMKKLGKAC 69 (82)
T ss_dssp CSEEEESHHHHHHHHTTTCEEEEEEETTSC----H---HHHHHHHHHHHHHTCCEEEESCHHHHHHHH
T ss_pred cCCeeEcHHHHHHHHHcCCeeEEEEeCCCC----H---HHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 489999999999999999999999998873 2 122337788899999999999887777654
No 15
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=93.11 E-value=0.32 Score=40.26 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=58.6
Q ss_pred HHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCc
Q 042331 281 FFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLT 360 (378)
Q Consensus 281 f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lg 360 (378)
++....+ .++.+.|.++|.+|++.|.+.-+++..+.- + ...+..+...++..+..++++.+..+.|.-+-.--
T Consensus 32 ~L~lA~k-agklv~G~~~v~kal~~gkaklViiA~D~~----~--~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~~ 104 (135)
T 2aif_A 32 LVQQACN-YKQLRKGANEATKALNRGIAEIVLLAADAE----P--LEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSR 104 (135)
T ss_dssp HHHHHHH-TTCEEESHHHHHHHHHTTCEEEEEEETTCS----C--HHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCSS
T ss_pred HHHHHHH-cCCcccCHHHHHHHHHcCCCeEEEEecCCC----h--HHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCCC
Confidence 3333333 389999999999999999999999998863 1 11224467778889999999998888777664434
Q ss_pred cE--EEEee
Q 042331 361 GV--AAILR 367 (378)
Q Consensus 361 GI--aAiLR 367 (378)
++ +||+-
T Consensus 105 ~v~~vaI~d 113 (135)
T 2aif_A 105 PVIAAAITS 113 (135)
T ss_dssp CCSEEEEEC
T ss_pred cEEEEEEEc
Confidence 44 66663
No 16
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=92.87 E-value=0.36 Score=37.71 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=53.9
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccccc-CccEEEEe
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQ-LTGVAAIL 366 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~-lgGIaAiL 366 (378)
.++.+.|.++|.+|++.|.+.-+++..+.- +..++ .+...++..+..++++.+..+.|.-+-. .-.++||+
T Consensus 16 agk~v~G~~~v~kai~~gka~lViiA~D~~----~~~~~---~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~~~~~vai~ 87 (101)
T 3on1_A 16 ARQLLTGEEQVVKAVQNGQVTLVILSSDAG----IHTKK---KLLDKCGSYQIPVKVVGNRQMLGRAIGKHERVVIGVK 87 (101)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTSC----HHHHH---HHHHHHHHHTCCEEEESCHHHHHHHTTSSCCSEEEEC
T ss_pred HCCEeECHHHHHHHHHcCCCcEEEEeCCCC----HHHHH---HHHHHHHHcCCCEEEeCCHHHHHHHhCCcCeEEEEEE
Confidence 489999999999999999999999998873 22222 3566678889999999888877776533 33455653
No 17
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=92.32 E-value=0.57 Score=36.54 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=54.0
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccccc-CccEEEEe
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQ-LTGVAAIL 366 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~-lgGIaAiL 366 (378)
.++.+.|.++|.+|++.|.+.-+++..+.- +..++ .+...++..+..++++.+..+.|.-+-. .--++||+
T Consensus 17 agk~v~G~~~v~kai~~gka~lViiA~D~~----~~~~~---~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~~~~~~ai~ 88 (101)
T 3v7q_A 17 ARKVVSGEDLVIKEIRNARAKLVLLTEDAS----SNTAK---KVTDKCNYYKVPYKKVESRAVLGRSIGKEARVVVAVT 88 (101)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTSC----HHHHH---HHHHHHHHTTCCEEEESCHHHHHHHTTSSCCSEEEEC
T ss_pred hhhcccchhhhHHHHhcCceeEEEEecccc----ccchh---hhcccccccCCCeeeechHHHHHhhhCccceEEEEEe
Confidence 489999999999999999999999998873 22232 3566678899999999888777766533 34455553
No 18
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=92.03 E-value=0.51 Score=37.72 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=55.0
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEE-CCCCCccccccc-Cc-cEEEE
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIF-SSMHFSGEQLGQ-LT-GVAAI 365 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~iv-s~~~~~G~~L~~-lg-GIaAi 365 (378)
.++.+.|.++|.+|++.|.+.-++|..+.- +.. ..++...+...+..++.+ .+..+.|.-+-. ++ .++||
T Consensus 24 agk~~~G~~~t~kai~~gkakLVilA~D~~----~~~---~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~~~v~~vaI 96 (112)
T 3iz5_f 24 SGKYTLGYKTVLKTLRSSLGKLIILANNCP----PLR---KSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSI 96 (112)
T ss_dssp TCEEEESHHHHHHHHHTTCCSEEEECSCCC----HHH---HHHHHHHHHHTTCCEECCCCTTCTHHHHHCTTCSSCEEEE
T ss_pred hCCeeECHHHHHHHHHcCCceEEEEeCCCC----HHH---HHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCccceEEEEE
Confidence 489999999999999999999999998872 212 233667788899999999 788888877643 33 44666
Q ss_pred e
Q 042331 366 L 366 (378)
Q Consensus 366 L 366 (378)
+
T Consensus 97 ~ 97 (112)
T 3iz5_f 97 L 97 (112)
T ss_dssp E
T ss_pred e
Confidence 5
No 19
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=91.80 E-value=0.39 Score=38.79 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccc
Q 042331 277 VLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQL 356 (378)
Q Consensus 277 ~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L 356 (378)
+.+++++.+..- ++.+.|.++|.+|++.|.+.-++|..+.- +... ...|...++..|..++++.+..+.|.-+
T Consensus 16 l~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~~----p~~~--~~~l~~lc~~~~VP~~~v~sk~eLG~a~ 88 (120)
T 1xbi_A 16 IQKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDVK----PEEV--VAHLPYLCEEKGIPYAYVASKQDLGKAA 88 (120)
T ss_dssp HHHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCCS----SGGG--TTTHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCCC----hHHH--HHHHHHHHHhcCCCEEEeCCHHHHHHHh
Confidence 345566666655 89999999999999999999999998863 1111 1225566778888898999888777765
Q ss_pred ccC--ccEEEEeec
Q 042331 357 GQL--TGVAAILRF 368 (378)
Q Consensus 357 ~~l--gGIaAiLRy 368 (378)
-.- -.++||+-+
T Consensus 89 G~~~~~s~vaI~d~ 102 (120)
T 1xbi_A 89 GLEVAASSVAIINE 102 (120)
T ss_dssp TCSSCCSEEEEEEC
T ss_pred CCCCCEEEEEEecc
Confidence 332 345677654
No 20
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=91.23 E-value=0.47 Score=39.19 Aligned_cols=72 Identities=14% Similarity=0.029 Sum_probs=54.4
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCcc--EEEEe
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTG--VAAIL 366 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgG--IaAiL 366 (378)
.+..+.|.++|.+|++.|.+.-++|..+.--. +.. ..|...++.+|..++++++..+.|.-+-.--+ ++||+
T Consensus 30 ~gkl~~G~~~v~kai~~gkakLViiA~D~~p~---~~~---~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~ 103 (134)
T 2ale_A 30 LRQLKKGANEATKTLNRGISEFIIMAADCEPI---EIL---LHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASIT 103 (134)
T ss_dssp TTCEEESHHHHHHHHHHTCEEEEEEETTCSSG---GGG---THHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEE
T ss_pred cCCcccCchHHHHHHHhCCCeEEEEeCCCCHH---HHH---HHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEE
Confidence 47999999999999999999999999886310 112 23567788999999999988887776543223 56665
No 21
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=91.06 E-value=0.37 Score=37.90 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=55.0
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEE-EECCCCCccccccc-Cc-cEEEE
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAH-IFSSMHFSGEQLGQ-LT-GVAAI 365 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~-ivs~~~~~G~~L~~-lg-GIaAi 365 (378)
.++.+.|.++|.+|++.|.+.-+++..+.- +..+++ +...++..+..++ ++.+..+.|.-+-. .+ .++||
T Consensus 20 agklv~G~~~v~kai~~gkaklViiA~D~~----~~~~~~---i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~~vaI 92 (104)
T 4a18_G 20 SGKATLGYKSTIKAIRNGTAKLVFISNNCP----TVRKSE---IEYYASLAQISIHHFVGSNVELGTACGKYHRCSTMAI 92 (104)
T ss_dssp HSEEEESHHHHHHHHHHTCCCEEEECTTSC----HHHHHH---HHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEEE
T ss_pred hCCEeECHHHHHHHHHcCCceEEEEeCCCC----HHHHHH---HHHHHHHcCCcEEEecCCHHHHHHHhCCccCEEEEEE
Confidence 389999999999999999999999998863 222223 4556777899998 58888888777644 32 35677
Q ss_pred eecC
Q 042331 366 LRFP 369 (378)
Q Consensus 366 LRy~ 369 (378)
+=.-
T Consensus 93 ~D~G 96 (104)
T 4a18_G 93 LDAG 96 (104)
T ss_dssp EECS
T ss_pred eccc
Confidence 7543
No 22
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=90.99 E-value=0.6 Score=36.34 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=54.6
Q ss_pred CcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEE-CCCCCcccccccC-c-cEEEEe
Q 042331 290 TRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIF-SSMHFSGEQLGQL-T-GVAAIL 366 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~iv-s~~~~~G~~L~~l-g-GIaAiL 366 (378)
++.+.|.++|.+|++.|.+.-+++..+- + +..+ ..+...++..+..++++ .+..+.|.-+-.- + .++||+
T Consensus 15 gkl~~G~~~v~kai~~gka~lViiA~D~--~--~~~~---~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~vai~ 87 (101)
T 1w41_A 15 GKIVMGARKSIQYAKMGGAKLIIVARNA--R--PDIK---EDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVV 87 (101)
T ss_dssp SEEEESHHHHHHHHHHTCCSEEEEETTS--C--HHHH---HHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCEEEEE
T ss_pred CCEeECHHHHHHHHHcCCCcEEEEeCCC--C--HHHH---HHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEEEEEe
Confidence 7999999999999999999999999883 1 2222 23556677889998886 7877777765432 3 357777
Q ss_pred ecCC
Q 042331 367 RFPL 370 (378)
Q Consensus 367 Ry~i 370 (378)
-...
T Consensus 88 d~g~ 91 (101)
T 1w41_A 88 DPGA 91 (101)
T ss_dssp ECTT
T ss_pred cCCH
Confidence 5543
No 23
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=90.94 E-value=0.63 Score=36.59 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=53.6
Q ss_pred CCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEE-EECCCCCccccccc-Cc-cEEE
Q 042331 288 DPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAH-IFSSMHFSGEQLGQ-LT-GVAA 364 (378)
Q Consensus 288 ~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~-ivs~~~~~G~~L~~-lg-GIaA 364 (378)
..++.+.|.++|.+|++.|.+.-+++..+.- +..+++ +...++..+..++ ++.+..+.|.-+-. .+ .++|
T Consensus 19 kagk~v~G~~~v~kai~~gkaklVilA~D~~----~~~~~~---i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~~~~~va 91 (105)
T 3u5e_c 19 KSGKYTLGYKSTVKSLRQGKSKLIIIAANTP----VLRKSE---LEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVS 91 (105)
T ss_dssp TTSEEEESHHHHHHHHHTTCCSEEEECTTSC----HHHHHH---HHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCSEEE
T ss_pred HhCCeeECHHHHHHHHHcCCceEEEEeCCCC----HHHHHH---HHHHHHHcCCCEEEeCCCHHHHHHHhCCcccEEEEE
Confidence 3489999999999999999999999999872 222333 5556677899998 57777777776633 22 2467
Q ss_pred Eeec
Q 042331 365 ILRF 368 (378)
Q Consensus 365 iLRy 368 (378)
|+=.
T Consensus 92 I~D~ 95 (105)
T 3u5e_c 92 ILEA 95 (105)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 6643
No 24
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=90.82 E-value=0.52 Score=37.43 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=54.9
Q ss_pred CcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEE-CCCCCccccccc-Cc-cEEEEe
Q 042331 290 TRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIF-SSMHFSGEQLGQ-LT-GVAAIL 366 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~iv-s~~~~~G~~L~~-lg-GIaAiL 366 (378)
++.+.|.++|.+|++.|.+.-+++..+. + +..+ ..|...++..+..++++ .+..+.|.-+-. .. .++||+
T Consensus 20 gkl~~G~~~v~kai~~gka~lViiA~D~--~--~~~~---~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~vaI~ 92 (110)
T 3cpq_A 20 GKVILGSKRTIKFVKHGEGKLVVLAGNI--P--KDLE---EDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVL 92 (110)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTC--B--HHHH---HHHHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSEEEEE
T ss_pred CCeeeCHHHHHHHHHcCCceEEEEeCCC--C--HHHH---HHHHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEEEEEe
Confidence 7999999999999999999999999887 2 1122 23566678889998888 777777776543 23 257777
Q ss_pred ecC
Q 042331 367 RFP 369 (378)
Q Consensus 367 Ry~ 369 (378)
-..
T Consensus 93 d~g 95 (110)
T 3cpq_A 93 DEG 95 (110)
T ss_dssp ECT
T ss_pred cCC
Confidence 543
No 25
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=89.62 E-value=0.73 Score=37.25 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=54.9
Q ss_pred CCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccc-cC-ccEEEE
Q 042331 288 DPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLG-QL-TGVAAI 365 (378)
Q Consensus 288 ~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~-~l-gGIaAi 365 (378)
..+..+.|.++|.+|++.|.+.-++|..+.-- .. -...+...++.+|..++++++..+.|.-+- .. -.++||
T Consensus 17 k~gkl~~G~~~v~kai~~gkakLViiA~D~~~----~~--~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s~v~I 90 (121)
T 2lbw_A 17 KAKNVKRGVKEVVKALRKGEKGLVVIAGDIWP----AD--VISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFI 90 (121)
T ss_dssp TTTCEEESHHHHHHHHHHSCCCEEEECTTCSC----TT--HHHHHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCSEEEE
T ss_pred HcCCccccHHHHHHHHHcCCceEEEEeCCCCH----HH--HHHHHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEEEEEE
Confidence 35899999999999999999999999988731 11 123366778899999999998887777543 22 345666
Q ss_pred e
Q 042331 366 L 366 (378)
Q Consensus 366 L 366 (378)
+
T Consensus 91 ~ 91 (121)
T 2lbw_A 91 V 91 (121)
T ss_dssp C
T ss_pred E
Confidence 5
No 26
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=89.50 E-value=0.79 Score=37.37 Aligned_cols=72 Identities=11% Similarity=-0.055 Sum_probs=53.8
Q ss_pred HHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccc
Q 042331 278 LKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQL 356 (378)
Q Consensus 278 l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L 356 (378)
|.+++....+ .++...|.++|.+|++.|.+.-++|..+.- |.. -...+...+..+|..++++++..+.|..+
T Consensus 12 l~~~L~~A~~-~gkl~~G~~~v~Kai~~gka~LViiA~D~~----p~~--~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~ 83 (126)
T 2xzm_U 12 LAKVIKSSNC-QDAISKGLHEVLRTIEAKQALFVCVAEDCD----QGN--YVKLVKALCAKNEIKYVSVPKRASLGEYL 83 (126)
T ss_dssp HHHHHTTTTS-SSCEEESHHHHHHHHHHTCCSEEEEESSCC----STT--HHHHHHHHHHHTTCCEEEESCSHHHHHHH
T ss_pred HHHHHHHHHH-cCCEeecHHHHHHHHHcCCceEEEEeCCCC----hHH--HHHHHHHHHHHhCCCEEEECCHHHHHHHH
Confidence 4444443333 378999999999999999999999998862 111 12336677889999999999988777654
No 27
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=88.96 E-value=0.85 Score=36.73 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=53.8
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccC--ccEEEEe
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQL--TGVAAIL 366 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~l--gGIaAiL 366 (378)
.++.+.|.++|.+|++.|.+.-+++..+.- +... ...|...++..|..++++.+..+.|.-+-.- -.++||+
T Consensus 27 ag~l~~G~~~v~kal~~gka~lViiA~D~~----~~~~--~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~ 100 (120)
T 1vq8_F 27 TGAVKKGTNETTKSIERGSAELVFVAEDVQ----PEEI--VMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVT 100 (120)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESCCS----SGGG--TTTHHHHHHTTCCCEEEESCHHHHHHHTTCSSCCSEEEES
T ss_pred cCCEeECHHHHHHHHHcCCceEEEEeCCCC----hHHH--HHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEe
Confidence 379999999999999999999999998863 1111 1225566788898998999888777765332 3455665
Q ss_pred ec
Q 042331 367 RF 368 (378)
Q Consensus 367 Ry 368 (378)
-+
T Consensus 101 d~ 102 (120)
T 1vq8_F 101 DA 102 (120)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 28
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=88.57 E-value=0.69 Score=37.48 Aligned_cols=74 Identities=16% Similarity=0.065 Sum_probs=54.7
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCcc--EEEEe
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTG--VAAIL 366 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgG--IaAiL 366 (378)
.++.+.|.++|.+|++.|.+.-+++..+.- +.. -...+...++.+|..+.++.+..+.|.-+-.--+ ++||+
T Consensus 29 agklv~G~~~v~kai~~gka~lViiA~D~~----p~~--~~~~l~~lc~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~ 102 (122)
T 3o85_A 29 LQAIKRGANEALKQVNRGKAELVIIAADAD----PIE--IVLHLPLACEDKGVPYVFIGSKNALGRACNVSVPTIVASIG 102 (122)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTCS----SGG--GGTTHHHHHHTTTCCEEEESCHHHHHHHTTCSSCCSEEEEC
T ss_pred hCCEeEcHHHHHHHHHcCCceEEEEeCCCC----hHH--HHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCCEEEEEEE
Confidence 379999999999999999999999998873 111 1123556678899999999988887777644333 35665
Q ss_pred ec
Q 042331 367 RF 368 (378)
Q Consensus 367 Ry 368 (378)
-+
T Consensus 103 d~ 104 (122)
T 3o85_A 103 KH 104 (122)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 29
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=87.47 E-value=1.1 Score=36.22 Aligned_cols=72 Identities=19% Similarity=0.092 Sum_probs=53.7
Q ss_pred CcEEECHHHHHHHHHccCccEEEEecCccccchhHh-HHHHHHHHHHHHccCCEEEEECCCCCcccccccC--ccEEEEe
Q 042331 290 TRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIAT-RKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQL--TGVAAIL 366 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~-r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~l--gGIaAiL 366 (378)
++.+.|.++|.+|++.|.+.-+++..+.- +.. ++. |...++..|..++++.+..+.|.-+-.- -.++||+
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~~----~~~~~~~---l~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~vaI~ 99 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDVD----PPEIVMH---LPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAII 99 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTCS----SGGGTTT---HHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEE
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCCC----hHHHHHH---HHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEE
Confidence 79999999999999999999999998863 111 222 5556778888898898888777765332 3566776
Q ss_pred ec
Q 042331 367 RF 368 (378)
Q Consensus 367 Ry 368 (378)
-+
T Consensus 100 d~ 101 (124)
T 2fc3_A 100 EP 101 (124)
T ss_dssp EC
T ss_pred Cc
Confidence 54
No 30
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=86.53 E-value=0.99 Score=36.27 Aligned_cols=73 Identities=18% Similarity=0.095 Sum_probs=53.1
Q ss_pred CcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccC--ccEEEEee
Q 042331 290 TRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQL--TGVAAILR 367 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~l--gGIaAiLR 367 (378)
++.+.|.++|.+|++.|.+.-+++..+.--. ...+. |...++..|..++++.+..+.|.-+-.- -.++||+-
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~~~~---~~~~~---l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~vaI~d 99 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDVDPP---EIVAH---LPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIIN 99 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCCSCS---TTTTH---HHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEEE
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCCChH---HHHHH---HHHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEec
Confidence 7999999999999999999999999886311 01222 5556777888888898888777765332 34566664
Q ss_pred c
Q 042331 368 F 368 (378)
Q Consensus 368 y 368 (378)
.
T Consensus 100 ~ 100 (119)
T 1rlg_A 100 E 100 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=84.32 E-value=1.4 Score=40.66 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=51.6
Q ss_pred CcEEECHHHHHHHHHcc-CccEEEEecCccccchhHhHHHHHHHHHHHHccC-CEEEEECCCCCccccc---ccCccEEE
Q 042331 290 TRACYGPKHVEVAHERM-AVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSG-GTAHIFSSMHFSGEQL---GQLTGVAA 364 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~G-AV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g-~~V~ivs~~~~~G~~L---~~lgGIaA 364 (378)
.-.+||...|.+|++.| .++.|+++++... + .+.++++.+.+.| ..++.++..- =++| ....||+|
T Consensus 28 ~f~veG~~~v~eal~~~~~i~~l~~~~~~~~------~-~~~~l~~~~~~~~~~~v~~v~~~~--l~~ls~~~~~qGv~a 98 (274)
T 1ipa_A 28 RFLIEGAREIERALQAGIELEQALVWEGGLN------P-EEQQVYAALGRVGRLALLEVSEAV--LKKLSVRDNPAGLIA 98 (274)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTCCC------H-HHHHHHHCC-----CEEEEECHHH--HHHHCCSSSCCSEEE
T ss_pred eEEEEeHHHHHHHHhCCCCeEEEEEEcCccc------c-hHHHHHHHHHhcCCccEEEeCHHH--HHHHhCCCCCCeEEE
Confidence 46789999999999988 6999999988642 1 1445666666777 7888888532 1122 34689999
Q ss_pred EeecCCCCCCC
Q 042331 365 ILRFPLPDLED 375 (378)
Q Consensus 365 iLRy~i~~~~~ 375 (378)
+.+.|-+++++
T Consensus 99 ~~~~~~~~l~~ 109 (274)
T 1ipa_A 99 LARMPERTLEE 109 (274)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCHHH
Confidence 99876544543
No 32
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=83.64 E-value=0.5 Score=39.53 Aligned_cols=73 Identities=11% Similarity=0.016 Sum_probs=55.1
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccCcc--EEEEe
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQLTG--VAAIL 366 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~lgG--IaAiL 366 (378)
.++.+.|.++|.+|++.|.++-++|..+.- + .+-...+...++.+|..++++++..+.|.-+-.--+ .+||+
T Consensus 48 agkl~~G~kev~KaI~~gkakLVIIA~D~~----p--~e~~~~l~~lC~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~ 121 (144)
T 2jnb_A 48 YKQLRKGANEATKTLNRGISEFIVMAADAE----P--LEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVT 121 (144)
T ss_dssp TTCCCBCHHHHHHHHHHTCEEEEEEETTCS----C--HHHHTTSCSSCGGGCCCCEEESCSHHHHHHHTCSSCCSEEEEE
T ss_pred cCCccccHHHHHHHHHhCCCeEEEEeCCCC----H--HHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCceEEEEEE
Confidence 478999999999999999999999998863 1 111222566788999999999998888876544333 47777
Q ss_pred e
Q 042331 367 R 367 (378)
Q Consensus 367 R 367 (378)
-
T Consensus 122 ~ 122 (144)
T 2jnb_A 122 I 122 (144)
T ss_dssp C
T ss_pred e
Confidence 3
No 33
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=81.00 E-value=3 Score=33.81 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=47.5
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEE-ECCCCCccccccc-Cc-cEEEE
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHI-FSSMHFSGEQLGQ-LT-GVAAI 365 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~i-vs~~~~~G~~L~~-lg-GIaAi 365 (378)
.++.+.|.++|.+|++.|.+..++|..+.- +..+. .+...+...+..|.+ +.+..+.|.-+-. .+ .++||
T Consensus 25 aGklv~G~~~v~kaIr~gkakLVIiA~Das----~~~~~---ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~~~v~~vaI 97 (125)
T 3vi6_A 25 SGKYVLGYKQTLKMIRQGKAKLVILANNCP----ALRKS---EIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 97 (125)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTSC----HHHHH---HHHHHHHHTTCEEEECSSCHHHHHHHTTCSSCCCEEEE
T ss_pred hCCeeeCHHHHHHHHHcCCceEEEEeCCCC----HHHHH---HHHHHHHHhCCCcEEEcCCHHHHHHHhCCcccEEEEEE
Confidence 379999999999999999999999998863 21222 244445555666654 5555555554433 22 24666
Q ss_pred eec
Q 042331 366 LRF 368 (378)
Q Consensus 366 LRy 368 (378)
+=-
T Consensus 98 ~D~ 100 (125)
T 3vi6_A 98 IDP 100 (125)
T ss_dssp EEC
T ss_pred eCc
Confidence 643
No 34
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=80.71 E-value=2.5 Score=38.49 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=52.1
Q ss_pred CcEEECHHHHHHHHHcc--CccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccc---ccCccEEE
Q 042331 290 TRACYGPKHVEVAHERM--AVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQL---GQLTGVAA 364 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~G--AV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L---~~lgGIaA 364 (378)
...+||...|.+|++.| .+++|+++++.... .+.++++.++..|..++.++..- =++| ....||+|
T Consensus 12 ~~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~-------~~~~l~~~~~~~~i~v~~v~~~~--l~~ls~~~~~qGv~a 82 (253)
T 1gz0_A 12 SEMIYGIHAVQALLERAPERFQEVFILKGREDK-------RLLPLIHALESQGVVIQLANRQY--LDEKSDGAVHQGIIA 82 (253)
T ss_dssp CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCT-------TTHHHHHHHHHHTCEEEEECSHH--HHHTTTSCCCTTEEE
T ss_pred cEEEEEHHHHHHHHhcCCCCeEEEEEECCccch-------hHHHHHHHHHHCCCcEEEeCHHH--HHHHhCCCCCcEEEE
Confidence 46799999999999998 59999999886421 13456777788899999888631 1122 34689999
Q ss_pred EeecC
Q 042331 365 ILRFP 369 (378)
Q Consensus 365 iLRy~ 369 (378)
+.+.+
T Consensus 83 ~~~~~ 87 (253)
T 1gz0_A 83 RVKPG 87 (253)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 98743
No 35
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=79.87 E-value=2.2 Score=39.52 Aligned_cols=69 Identities=12% Similarity=0.038 Sum_probs=50.7
Q ss_pred CcEEECHHHHHHHHHcc-CccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccc---ccCccEEEE
Q 042331 290 TRACYGPKHVEVAHERM-AVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQL---GQLTGVAAI 365 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~G-AV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L---~~lgGIaAi 365 (378)
.-.+||...|.+|++.| .+..|+++++.... .++++.+...|..++.+|..-- ++| ....||+|+
T Consensus 34 ~flveG~~~V~eaL~~~~~i~~l~~~~~~~~~---------~~l~~~~~~~~~~v~~v~~~~l--~~ls~~~~~qGv~a~ 102 (277)
T 3nk6_A 34 TTLIEDTEPLMECIRAGVQFIEVYGSSGTPLD---------PALLDLCRQREIPVRLIDVSIV--NQLFKAERKAKVFGI 102 (277)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTSCCC---------HHHHHHHHHTTCCEEEECHHHH--TTCC-----CCEEEE
T ss_pred CEEEEeHHHHHHHHhCCCCeEEEEEeCCccCc---------HHHHHHHHhcCCcEEEECHHHH--HHhhCCCCCCeEEEE
Confidence 46799999999999987 78999999886421 3467777888999998885321 122 346899999
Q ss_pred eecC
Q 042331 366 LRFP 369 (378)
Q Consensus 366 LRy~ 369 (378)
.+.|
T Consensus 103 ~~~~ 106 (277)
T 3nk6_A 103 ARVP 106 (277)
T ss_dssp EECC
T ss_pred EecC
Confidence 9876
No 36
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=76.67 E-value=1.8 Score=36.12 Aligned_cols=72 Identities=10% Similarity=0.043 Sum_probs=53.7
Q ss_pred HHHHHHHHhhCCCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHH-HHHHHH--ccCCEEEEECCCCCcc
Q 042331 277 VLKEFFNMLSNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVD-LVNSVK--DSGGTAHIFSSMHFSG 353 (378)
Q Consensus 277 ~l~~f~~~l~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~-lve~v~--~~g~~V~ivs~~~~~G 353 (378)
+|.+.++...+. +..+.|.+++.+|++.|.+.-+++.++-- -..+.. +...++ .++..++.|++..+.|
T Consensus 27 aL~~vLk~A~~~-g~l~~G~~et~Kal~kg~a~LvvLA~D~~-------~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG 98 (143)
T 3u5c_M 27 ALKVVLRTALVH-DGLARGLRESTKALTRGEALLVVLVSSVT-------EANIIKLVEGLANDPENKVPLIKVADAKQLG 98 (143)
T ss_dssp HHHHHHHHHHHT-TCEEESHHHHHHHHSSTTCSCEECCSCCS-------TTHHHHHHHHHHHCSSSCCCCCCCSCHHHHH
T ss_pred HHHHHHHHHHHc-CCEeEcHHHHHHHHhcCceeEEEEeCCCC-------HHHHHHHHHHHHhhhhhCCCEEEECCHHHHh
Confidence 344444443333 78999999999999999999999998762 113444 556788 8999999999887777
Q ss_pred ccc
Q 042331 354 EQL 356 (378)
Q Consensus 354 ~~L 356 (378)
+..
T Consensus 99 ~a~ 101 (143)
T 3u5c_M 99 EWA 101 (143)
T ss_dssp HHS
T ss_pred HHh
Confidence 654
No 37
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=75.99 E-value=3.5 Score=32.87 Aligned_cols=78 Identities=26% Similarity=0.236 Sum_probs=59.6
Q ss_pred hCCCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHH-HHHHHHccCCEEEEECCCCCccccccc-CccEE
Q 042331 286 SNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVD-LVNSVKDSGGTAHIFSSMHFSGEQLGQ-LTGVA 363 (378)
Q Consensus 286 ~~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~-lve~v~~~g~~V~ivs~~~~~G~~L~~-lgGIa 363 (378)
.+.|.....|.++|.+|++.|....++|..+.- |. .+.. |...++.+|..++++++..+.|.-+-. .--+.
T Consensus 20 ~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~----p~---~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k~~a~v 92 (113)
T 3jyw_G 20 SPKPYAVKYGLNHVVALIENKKAKLVLIANDVD----PI---ELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVA 92 (113)
T ss_dssp SSSSSCEEESHHHHHHTTTTTCCSEEEECSCCS----SH---HHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSSSCCSE
T ss_pred CCCCchhhchHHHHHHHHHcCCceEEEEeCCCC----HH---HHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCCcEEE
Confidence 456678899999999999999999999998873 11 2333 778899999999999999888776522 33456
Q ss_pred EEeecCC
Q 042331 364 AILRFPL 370 (378)
Q Consensus 364 AiLRy~i 370 (378)
||+-+.-
T Consensus 93 ai~d~~~ 99 (113)
T 3jyw_G 93 ALTEVRA 99 (113)
T ss_dssp EEECSCS
T ss_pred EEEeCCH
Confidence 7776543
No 38
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=68.83 E-value=10 Score=35.13 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=49.5
Q ss_pred CcEEECHHHHHHHHHccC-ccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccc---c-cCccEEE
Q 042331 290 TRACYGPKHVEVAHERMA-VQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQL---G-QLTGVAA 364 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~GA-V~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L---~-~lgGIaA 364 (378)
.-.+||...|.+|++.|. ++.|+++++.... ..+.++++.+ +..++.++..- =++| . ...||+|
T Consensus 40 ~f~veG~~~V~eal~~~~~i~~l~~~~~~~~~------~~~~~l~~~~---~~~v~~v~~~~--l~~ls~~~~~~qGv~a 108 (287)
T 1x7o_A 40 EFLVMGVRPISLAVEHGWPVRTLLYDGQRELS------KWARELLRTV---RTEQIAMAPDL--LMELGEKNEAPPEVVA 108 (287)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEESSCCCC------HHHHHHHHHS---CSEEEEECHHH--HTTSSCSSSCCCSEEE
T ss_pred cEEEEeHHHHHHHHhCCCCeEEEEEecCcccc------hhHHHHHHHc---CCcEEEeCHHH--HHHHhCCCCCCCcEEE
Confidence 467899999999999987 8999999886521 1234454443 36788777431 1122 3 5589999
Q ss_pred EeecCCCCCC
Q 042331 365 ILRFPLPDLE 374 (378)
Q Consensus 365 iLRy~i~~~~ 374 (378)
+.+.|-++++
T Consensus 109 ~~~~~~~~l~ 118 (287)
T 1x7o_A 109 VVEMPADDLD 118 (287)
T ss_dssp EEECCCCCGG
T ss_pred EEecCCCCHH
Confidence 9986544443
No 39
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=61.86 E-value=17 Score=30.82 Aligned_cols=78 Identities=13% Similarity=0.019 Sum_probs=52.1
Q ss_pred HHHHHHHhhCCCCcEEECHHHHHHHH--HccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccc
Q 042331 278 LKEFFNMLSNDPTRACYGPKHVEVAH--ERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQ 355 (378)
Q Consensus 278 l~~f~~~l~~~~~~a~yG~~~V~~A~--e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~ 355 (378)
+.+..+..... +...-|..++.+|+ +.|.+.-.++..+---..++..--...-+...+..+|..+..|++....|+.
T Consensus 23 l~evLk~A~~~-~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a 101 (165)
T 2kg4_A 23 LEEVLSKALSQ-RTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAEL 101 (165)
T ss_dssp HHHHHHHHHHH-TCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHH
T ss_pred HHHHHHHHHHc-CCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHH
Confidence 33444433333 68999999999999 9999999999987521111000000111457788999999999998777665
Q ss_pred c
Q 042331 356 L 356 (378)
Q Consensus 356 L 356 (378)
.
T Consensus 102 ~ 102 (165)
T 2kg4_A 102 L 102 (165)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=58.84 E-value=4.7 Score=36.97 Aligned_cols=74 Identities=18% Similarity=0.080 Sum_probs=53.5
Q ss_pred CCCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCcccccccC-ccEEEE
Q 042331 287 NDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQL-TGVAAI 365 (378)
Q Consensus 287 ~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~l-gGIaAi 365 (378)
+.++....|.++|.+|++.|.+..++|..+.--. +. ..-|...+..+|.-++++++..+.|.-+-.- -.++||
T Consensus 131 k~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~----ei--~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~~s~VAI 204 (266)
T 2zkr_f 131 KRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPI----EL--VVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAF 204 (266)
T ss_dssp SSCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSS----TT--TTHHHHHHHHHTCCEEEESCHHHHHHHHTSSCCSEEEE
T ss_pred CCCCeeeeChHHHHHHHHhCCceEEEEecCCCHH----HH--HHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCceEEEE
Confidence 4567889999999999999999999999887311 11 1225577888999999998887777654322 223455
Q ss_pred e
Q 042331 366 L 366 (378)
Q Consensus 366 L 366 (378)
+
T Consensus 205 t 205 (266)
T 2zkr_f 205 T 205 (266)
T ss_dssp T
T ss_pred e
Confidence 5
No 41
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=55.38 E-value=13 Score=33.69 Aligned_cols=74 Identities=24% Similarity=0.240 Sum_probs=53.6
Q ss_pred CCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCCccccccc-CccEEEEee
Q 042331 289 PTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHFSGEQLGQ-LTGVAAILR 367 (378)
Q Consensus 289 ~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~~L~~-lgGIaAiLR 367 (378)
|....+|.++|.+|++.|.+.-++|..+.- +.+...+ |...++.+|..++++.+..+.|.-+-. ---++||.-
T Consensus 129 p~~lk~G~keV~KaIekgKAkLVVIA~Dad----P~eivk~--LpaLC~k~gVPy~~V~sK~eLG~A~Gkk~~s~VAItD 202 (256)
T 3izc_H 129 PYAVKYGLNHVVALIENKKAKLVLIANDVD----PIELVVF--LPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTE 202 (256)
T ss_dssp SCCEEESHHHHHHHHHHTCCSEEEEESCCS----SGGGTTH--HHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEES
T ss_pred ChhhhccHHHHHHHHHhCcceEEEEeCCCC----hHHHHHH--HHHHHHhcCCCEEEECCHHHHHHHhCCCCcEEEEeec
Confidence 456789999999999999999999998873 1111122 577889999999999998877765422 223455654
Q ss_pred c
Q 042331 368 F 368 (378)
Q Consensus 368 y 368 (378)
+
T Consensus 203 ~ 203 (256)
T 3izc_H 203 V 203 (256)
T ss_dssp S
T ss_pred C
Confidence 3
No 42
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=54.00 E-value=32 Score=27.17 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=43.8
Q ss_pred CcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCC
Q 042331 290 TRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHF 351 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~ 351 (378)
+.-+||.++....++...|+.++|+-.... .....++++.+.+.|.+|.++|+..+
T Consensus 48 g~pV~g~~~l~~~~~~~~id~viia~~~~~------~~~~~~i~~~l~~~gv~v~~vP~~~~ 103 (141)
T 3nkl_A 48 GITIYRPKYLERLIKKHCISTVLLAVPSAS------QVQKKVIIESLAKLHVEVLTIPNLDD 103 (141)
T ss_dssp TEEEECGGGHHHHHHHHTCCEEEECCTTSC------HHHHHHHHHHHHTTTCEEEECCCHHH
T ss_pred CeEEECHHHHHHHHHHCCCCEEEEeCCCCC------HHHHHHHHHHHHHcCCeEEECCCHHH
Confidence 566889888888899999999999855321 22345688889999999999998654
No 43
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=44.15 E-value=30 Score=31.27 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=47.6
Q ss_pred CcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECC-CCCccccc---ccCccEEEE
Q 042331 290 TRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSS-MHFSGEQL---GQLTGVAAI 365 (378)
Q Consensus 290 ~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~-~~~~G~~L---~~lgGIaAi 365 (378)
.-.+||...|.+|++...++.|+++++... ++++ ..+..++.++. .-- ++| ....||+|+
T Consensus 27 ~f~veG~~~v~eal~~~~i~~l~~~~~~~~-----------~l~~---~~~~~v~~v~~~~~l--~~ls~~~~~qGv~a~ 90 (257)
T 2i6d_A 27 AFAVEGPKLVGEMLPFYRCRMLVGTAAMLR-----------AVST---PHDAEVVELPESFDF--KRISTQTTPQPLMAV 90 (257)
T ss_dssp EEEEESHHHHHHHGGGSCEEEEEEEHHHHH-----------TSCC---CTTCEEEEECTTCCG--GGTCCSSSCCSEEEE
T ss_pred cEEEEcHHHHHHHHhcCCcCEEEEEcCchH-----------HHHH---hcCCCEEEeChHHHH--HHHhcCCCCCeEEEE
Confidence 467899999999998844899999876421 1222 45678888887 321 122 346899999
Q ss_pred eecCCCCCCC
Q 042331 366 LRFPLPDLED 375 (378)
Q Consensus 366 LRy~i~~~~~ 375 (378)
.+.|-+++++
T Consensus 91 ~~~~~~~l~~ 100 (257)
T 2i6d_A 91 FDLPAEPEPV 100 (257)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCChHH
Confidence 9876544443
No 44
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=39.69 E-value=47 Score=27.38 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=37.8
Q ss_pred CHHHHHHHHHccC--ccEEEEecC--ccccchhHhHHHHHHHHHHHHccCCEEEEECCC
Q 042331 295 GPKHVEVAHERMA--VQTLLITDD--LFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSM 349 (378)
Q Consensus 295 G~~~V~~A~e~GA--V~tLLI~d~--l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~ 349 (378)
|+...+.+++.|. +++|+|.+- +.|+ -.++..+++...+.|..|+++...
T Consensus 61 ~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~-----~~~~~~~~~~l~~~gv~l~~~~~~ 114 (167)
T 3guv_A 61 QFNRMMEDIKSGKDGVSFVLVFKLSRFARN-----AADVLSTLQIMQDYGVNLICVEDG 114 (167)
T ss_dssp HHHHHHHHHHTCTTCCSEEEESCGGGTCSS-----HHHHHHHHHHHHHTTCEEEETTTT
T ss_pred HHHHHHHHHHcCCCCccEEEEEeCchhcCC-----HHHHHHHHHHHHHCCCEEEEeeCC
Confidence 5677888899998 999999742 3443 235666888889999999888754
No 45
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=38.49 E-value=37 Score=28.09 Aligned_cols=50 Identities=8% Similarity=0.020 Sum_probs=37.1
Q ss_pred CHHHHHHHHHccCccEEEEe--cCccccchhHhHHHHHHHHHHHHccCCEEEEECCC
Q 042331 295 GPKHVEVAHERMAVQTLLIT--DDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSM 349 (378)
Q Consensus 295 G~~~V~~A~e~GAV~tLLI~--d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~ 349 (378)
|+...+.+++.|.+++|+|. |-|.|+ -.++..+++...+.|..|+++...
T Consensus 63 ~l~~ll~~~~~g~id~vvv~~ldRl~R~-----~~~~~~~~~~l~~~gv~l~~~~~~ 114 (169)
T 3g13_A 63 DFQRMINDCMNGEIDMVFTKSISRFARN-----TLDTLKYVRMLKERNIAVYFEDEK 114 (169)
T ss_dssp HHHHHHHHHHTTCCSEEEESCHHHHCSS-----HHHHHHHHHHHHTTTCEEEETTTT
T ss_pred HHHHHHHHHHcCCCcEEEEEeccccccC-----hHHHHHHHHHHHHcCCEEEEecCC
Confidence 45677788889999999886 344553 235667888889999999887654
No 46
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=38.09 E-value=61 Score=29.32 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=49.0
Q ss_pred CCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHH-HHHHHHccCCEEEEECCCCCccccc
Q 042331 288 DPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVD-LVNSVKDSGGTAHIFSSMHFSGEQL 356 (378)
Q Consensus 288 ~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~-lve~v~~~g~~V~ivs~~~~~G~~L 356 (378)
.|-...+|.++|.++++.|...-++|..+.- +. ++.. |...++.+|.-.++|++..+.|.-.
T Consensus 121 ~p~~lk~GvneVtKaIekgKAqLVVIA~Dvd----Pi---elv~~LPaLCee~~VPY~~V~sK~~LG~av 183 (255)
T 4a17_F 121 KPIVLKYGLNHITTLIENKQAKLVVIAHDVD----PI---ELVIFLPQLCRKNDVPFAFVKGKAALGKLV 183 (255)
T ss_dssp CCCCEEECHHHHHHHHHTSCCSEEEEESCCS----ST---HHHHHHHHHHHHTTCCEEEESCHHHHHHHH
T ss_pred CCceeecchHHHHHHHHcCCceEEEEeCCCC----hH---HHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 3456789999999999999999999998873 11 2333 6688899999999999887766643
No 47
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=34.31 E-value=51 Score=29.81 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=54.5
Q ss_pred CCCCcEEECHHHHHHHHHccCccEEEEecCccccchhHhHHHHHH-HHHHHHccCCEEEEECCCCCccccccc-CccEEE
Q 042331 287 NDPTRACYGPKHVEVAHERMAVQTLLITDDLFRNFEIATRKKYVD-LVNSVKDSGGTAHIFSSMHFSGEQLGQ-LTGVAA 364 (378)
Q Consensus 287 ~~~~~a~yG~~~V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~-lve~v~~~g~~V~ivs~~~~~G~~L~~-lgGIaA 364 (378)
+.|-...+|..+|.+++|.|...-++|..+.- |. +++- |...++.+|.--.+|++....|.-... ---.+|
T Consensus 123 krp~~lk~GvneVTklVE~kKAqLVVIA~DVd----Pi---ElV~fLPaLC~k~gVPY~iVk~KarLG~~vgrKtct~Va 195 (258)
T 3iz5_H 123 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVD----PI---ELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLC 195 (258)
T ss_dssp CCCCCEEESHHHHHHHHHTTCEEEEEEESCCS----ST---HHHHHHHHHHTTTTCCEEEESCHHHHHHHTTCSSCCSEE
T ss_pred CCCceeecccHHHHHHHHcCcceEEEEeCCCC----hH---HHHhHHHHHHHhcCCCeEEECCHHHHHHHhCCccceEEE
Confidence 34566789999999999999999999998873 21 3343 788899999999999988766654321 233445
Q ss_pred Eeec
Q 042331 365 ILRF 368 (378)
Q Consensus 365 iLRy 368 (378)
+--+
T Consensus 196 ~t~v 199 (258)
T 3iz5_H 196 LTTV 199 (258)
T ss_dssp EEES
T ss_pred EEec
Confidence 5433
No 48
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=33.27 E-value=27 Score=27.16 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcccc-cCccEEEEECCccC
Q 042331 183 NKFFDSVLHAFLKHVDF-NVVRCAVIASPGFT 213 (378)
Q Consensus 183 ~~f~~~v~~~l~~~~~~-~~~~~iiIaGpg~~ 213 (378)
++-=++|++.+.+.+.. .-+..+-++||||.
T Consensus 55 ~~~P~~iA~~i~~~l~~~~~i~~vevagpGFI 86 (109)
T 3gdz_A 55 GMAPRQLAEQVLSHLDLNGIANKVEIAGPGFI 86 (109)
T ss_dssp TSCHHHHHHHHHHHCCCTTTEEEEEEETTTEE
T ss_pred CCCHHHHHHHHHHhcCcCCcEeEEEEeCCCeE
Confidence 33445788888777653 34788999999974
No 49
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=31.99 E-value=53 Score=31.09 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=47.2
Q ss_pred ccCccEEEEECCcc--------CHHHHHHHHHHHHhhcccchhhccCCcEEEE----EcCCCccchHHHHHHhhhHHHHH
Q 042331 199 FNVVRCAVIASPGF--------TKDQFHRYLLLEAERTQLRPIIANKSRIVIV----HTSSGYKHSLREVLDASNVMNLI 266 (378)
Q Consensus 199 ~~~~~~iiIaGpg~--------~k~~f~~~l~~~~~~~~~~~~~~~~~ki~~~----~~s~~~~~gl~Evl~~~~v~~~l 266 (378)
-...++|||.||.- .++.++++|+.... ++|.+. +.+.+.+..++...++..+..-+
T Consensus 139 vp~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~-----------~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~ 207 (337)
T 4dey_A 139 VPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFE-----------GRISITRVTADISLAKRSVLNNPSKHAIIERSN 207 (337)
T ss_dssp ECSSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTT-----------TSEEEEEECSCGGGC------------------
T ss_pred cCCCCceEEECCccccchhHHHHHHHHHHhhHHhcC-----------CccceEeecchhhhcchhhhhcccchhhhcccc
Confidence 34678999999986 35667777777664 344222 23344444444444554444445
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcEE------E-CHHHHHHHHHccCcc
Q 042331 267 KETKAAQEVKVLKEFFNMLSNDPTRAC------Y-GPKHVEVAHERMAVQ 309 (378)
Q Consensus 267 ~~~~~~~e~~~l~~f~~~l~~~~~~a~------y-G~~~V~~A~e~GAV~ 309 (378)
....+.+-..-+++.++...++ +.| - |...+.++. ..++-
T Consensus 208 ~~~~~~ev~seVe~i~~v~~~G--k~vILDIDvQnGa~qlk~~~-~~~i~ 254 (337)
T 4dey_A 208 TRSSLAEVQSEIERIFELARTL--QLVVLDADTINHPAQLSKTS-LAPIV 254 (337)
T ss_dssp -CCCHHHHHHHHHHHHHHTTTC--CEEEEEETTCCSGGGTTTSS-CCCEE
T ss_pred cccchHHHHhHHHHHHHHHhCC--CEEEEEeCcHHHHHHHHhcC-CCCEE
Confidence 5555555556788888777654 444 3 777775542 34443
No 50
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=30.09 E-value=1.3e+02 Score=26.73 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=34.2
Q ss_pred EEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCC
Q 042331 310 TLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHF 351 (378)
Q Consensus 310 tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~ 351 (378)
.||+.||-+.+-|+..+..+.+++....+.|..|.+++.+-+
T Consensus 173 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 173 KMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 589999998888999999999977776556888888886544
No 51
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=28.56 E-value=71 Score=26.00 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=33.1
Q ss_pred EEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCC
Q 042331 310 TLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMH 350 (378)
Q Consensus 310 tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~ 350 (378)
.+|+.|+-+.+-|+..+..+.+++....+.|..|.+++.+.
T Consensus 83 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 83 SLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp SEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 58888998888888889899888887766688888888553
No 52
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=28.30 E-value=1.2e+02 Score=24.66 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=50.7
Q ss_pred CceEEEecCC--hhhHHHHHHhhcCCCeEEEEEEEeEeeccCCCCcceeEEEEEEEEEEEEeeccCCCCeEEEEEEEeec
Q 042331 13 PGSVKMIPVD--SDDLWFAYNLVNAGDSVLAVTVRKVVRQTKSGGKDAERVKLKLEIKVEALDYDKEGSALRISGKNILE 90 (378)
Q Consensus 13 ~g~v~l~~e~--~dDlw~Lynli~~gD~V~~~t~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~i~~~~~~~~Lri~G~i~~~ 90 (378)
+|.++ ..|+ .||+-.- -..+.+..+...|+.++......| .+ -+.|++..
T Consensus 24 ~G~lk-rvEDl~teDFv~s-A~~s~~~~L~~stv~~I~~s~~~g-----~v---------~ltF~~g~------------ 75 (133)
T 1oa8_A 24 NGELK-KVEDLKTEDFIQS-AEISNDLKIDSSTVERIEDSHSPG-----VA---------VIQFAVGE------------ 75 (133)
T ss_dssp TSCEE-EGGGCCHHHHHHH-HHHCSSEEEEEEEEEEEEECSSTT-----EE---------EEEEEETT------------
T ss_pred CCceE-EeecccHHHHHHh-hccCcccccccceEEEeecCCCCC-----eE---------EEEEeeCC------------
Confidence 35665 6777 8995544 778888899999998886421221 11 11222211
Q ss_pred ccccccccEEEEEEccCCcEEEEeccCChhhHHHH
Q 042331 91 NEHVKIGAFHSLEIELHRPFVLTKDVWDSVALDTL 125 (378)
Q Consensus 91 ~~~v~~G~~ht~~l~~~~~v~i~k~~wd~~~l~~L 125 (378)
-.+.-++++.+..||=++.+.|.++.=++=
T Consensus 76 -----~~~~v~~ev~~ehPFFV~gqGWsSc~P~~T 105 (133)
T 1oa8_A 76 -----HRAQVSVEVLVEYPFFVFGQGWSSCCPERT 105 (133)
T ss_dssp -----TTEEEEEEEETTCCEEETTTEEEESCHHHH
T ss_pred -----CccEEEEEecCCCCcEEcCCcccccCHhHh
Confidence 134557788899999999889976544333
No 53
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=27.56 E-value=81 Score=27.41 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=32.7
Q ss_pred cEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCC
Q 042331 309 QTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSM 349 (378)
Q Consensus 309 ~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~ 349 (378)
-.||+.||-+..-|+..+..+.+++....+.|..|.+++.+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35899999988889999999999776665558888888754
No 54
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=27.36 E-value=1.6e+02 Score=26.96 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHccCccEEEEecCccccchh--HhHHHHHHHHHHHHccCCEEEEECCCCCccc
Q 042331 302 AHERMAVQTLLITDDLFRNFEI--ATRKKYVDLVNSVKDSGGTAHIFSSMHFSGE 354 (378)
Q Consensus 302 A~e~GAV~tLLI~d~l~r~~d~--~~r~~~~~lve~v~~~g~~V~ivs~~~~~G~ 354 (378)
.+....++.++++=+++....+ .....+.+++....+.+..|++++.+|+...
T Consensus 35 ~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~GNHD~~~ 89 (333)
T 1ii7_A 35 IAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQ 89 (333)
T ss_dssp HHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCTTTCCS
T ss_pred HHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCCcCCCcc
Confidence 3344568999999998854322 2334455566666677889999999999753
No 55
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=26.51 E-value=91 Score=28.21 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhh
Q 042331 181 ALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAER 227 (378)
Q Consensus 181 ~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~ 227 (378)
.+++|.+.++..+....+..++..|||+|.-...+.|++.+.+.+..
T Consensus 217 ~~~~~~~~La~~i~~l~~~~~p~~IvlgGgi~~~~~~~~~l~~~l~~ 263 (297)
T 4htl_A 217 LITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMES 263 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGSTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccHHHHHHHHHHHHH
Confidence 35566666666666666666789999999766556777777776653
No 56
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=25.12 E-value=88 Score=28.01 Aligned_cols=46 Identities=7% Similarity=0.009 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCccCHHHHHHHHHHHHhh
Q 042331 182 LNKFFDSVLHAFLKHVDFNVVRCAVIASPGFTKDQFHRYLLLEAER 227 (378)
Q Consensus 182 ~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~k~~f~~~l~~~~~~ 227 (378)
++++.+.++..+.......++..|||+|.-...+.|.+.+.+.+.+
T Consensus 208 ~~~~~~~L~~~i~~l~~~l~p~~IvlgG~i~~~~~~~~~l~~~l~~ 253 (292)
T 2gup_A 208 IERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVED 253 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCccccchHHHHHHHHHHHH
Confidence 4566666666666665556788999999876556677766666544
No 57
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=24.52 E-value=95 Score=27.86 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=32.7
Q ss_pred EEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCC
Q 042331 310 TLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSM 349 (378)
Q Consensus 310 tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~ 349 (378)
.||+.||-+.+-|+..+..+.+++....+.|..|.+++.+
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5899999988889999999999777665558788888754
No 58
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=24.35 E-value=1e+02 Score=27.18 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=39.1
Q ss_pred EEECHHH---HHHHHHccCccEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCC
Q 042331 292 ACYGPKH---VEVAHERMAVQTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHF 351 (378)
Q Consensus 292 a~yG~~~---V~~A~e~GAV~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~ 351 (378)
-..|..+ +..|+-.. -.||+.||-+.+-|+..+..+.+++....+.|..|.+++.+.+
T Consensus 144 LSgGqkQrv~iAraL~~~--p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLE--PTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp ----HHHHHHHHHHHHHC--CSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHHcC--CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 5566643 33344333 2689999998888999999999987777666888888886543
No 59
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=23.96 E-value=86 Score=28.04 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=33.0
Q ss_pred cEEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCC
Q 042331 309 QTLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSM 349 (378)
Q Consensus 309 ~tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~ 349 (378)
-.||+.||-+.+-|+..+..+.+++....+.|..|.+++.+
T Consensus 172 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35899999988889999999999777665568788888754
No 60
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.03 E-value=99 Score=27.60 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=32.9
Q ss_pred EEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCC
Q 042331 310 TLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSM 349 (378)
Q Consensus 310 tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~ 349 (378)
.||+.||-+..-|+..+..+.+++....+.|..|.+++.+
T Consensus 166 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 205 (256)
T 1vpl_A 166 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205 (256)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5889999988889999999999777766668888888755
No 61
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=22.89 E-value=1.3e+02 Score=26.79 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=33.8
Q ss_pred EEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCC
Q 042331 310 TLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHF 351 (378)
Q Consensus 310 tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~ 351 (378)
.||+.||-+.+-|+..+..+.+++....+.|..|.+++.+.+
T Consensus 158 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~ 199 (266)
T 2yz2_A 158 DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199 (266)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 589999998888999999999977766555888888886644
No 62
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=22.66 E-value=1.1e+02 Score=27.04 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=32.6
Q ss_pred EEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCC
Q 042331 311 LLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMH 350 (378)
Q Consensus 311 LLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~ 350 (378)
||+.||-+.+-|+..+..+.+++....+.|..|.+++.+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 9999999988899999999997776655587888887553
No 63
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.33 E-value=89 Score=27.46 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=33.1
Q ss_pred EEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCC
Q 042331 310 TLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMH 350 (378)
Q Consensus 310 tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~ 350 (378)
.||+.||-+.+-|+..+..+.+++....+.|..|.+++.+.
T Consensus 159 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 58899999888899999999997777665677888887553
No 64
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=21.72 E-value=69 Score=25.47 Aligned_cols=50 Identities=12% Similarity=0.055 Sum_probs=34.1
Q ss_pred CHHHHHHHHHccCccEEEEec--CccccchhHhHHH-HHHHHHHHHccCCEEEEECCC
Q 042331 295 GPKHVEVAHERMAVQTLLITD--DLFRNFEIATRKK-YVDLVNSVKDSGGTAHIFSSM 349 (378)
Q Consensus 295 G~~~V~~A~e~GAV~tLLI~d--~l~r~~d~~~r~~-~~~lve~v~~~g~~V~ivs~~ 349 (378)
|+...+.+++.|.+++|+|.+ -+.|+. .+ +..+++...+.|..++++...
T Consensus 59 ~l~~ll~~~~~g~~d~lvv~~ldRl~R~~-----~~~~~~~~~~l~~~gv~l~~~~~~ 111 (138)
T 3bvp_A 59 AMQRLINDIENKAFDTVLVYKLDRLSRSV-----RDTLYLVKDVFTKNKIDFISLNES 111 (138)
T ss_dssp HHHHHHHGGGGTSCSEEEESSHHHHCSCH-----HHHHHHHHHTTGGGTCEEEETTTT
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCcccccH-----HHHHHHHHHHHHHCCCEEEEecCC
Confidence 445666777888999988875 334431 23 445677788999999877643
No 65
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=21.00 E-value=1.7e+02 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.006 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCccC-HHHHHHHHHHHHhhc
Q 042331 181 ALNKFFDSVLHAFLKHVDFNVVRCAVIASPGFT-KDQFHRYLLLEAERT 228 (378)
Q Consensus 181 ~~~~f~~~v~~~l~~~~~~~~~~~iiIaGpg~~-k~~f~~~l~~~~~~~ 228 (378)
.+++|.+.++..+....+..++ .|||+|.-.. .+.|++.+.+.+.+.
T Consensus 239 ~l~~~~~~Lg~~i~nl~~~ldP-~IviGGgi~~~~~~~~~~l~~~l~~~ 286 (366)
T 3mcp_A 239 AFEELGEMAGDALASAITLIDG-LIVIGGGLSGASKYILPVLLKEMNAQ 286 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-EEEEESGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-EEEEEChhhhchHHHHHHHHHHHHHh
Confidence 3566666777777666666678 9999997654 466777777777654
No 66
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=21.00 E-value=1.2e+02 Score=26.94 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=32.5
Q ss_pred EEEEecCccccchhHhHHHHHHHHHHHHcc-CCEEEEECCCC
Q 042331 310 TLLITDDLFRNFEIATRKKYVDLVNSVKDS-GGTAHIFSSMH 350 (378)
Q Consensus 310 tLLI~d~l~r~~d~~~r~~~~~lve~v~~~-g~~V~ivs~~~ 350 (378)
.||+.||-+.+-|+..+..+.+++....+. |..|.+++.+.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 148 KLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp SEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 589999998888999999999977666554 87888887553
No 67
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=20.62 E-value=2.5e+02 Score=23.98 Aligned_cols=56 Identities=5% Similarity=0.129 Sum_probs=36.2
Q ss_pred HHHHHHHccCccEEEEecCccccchhHh------------------------HHHHHHHHHHHHccCCEEEEECCCCCcc
Q 042331 298 HVEVAHERMAVQTLLITDDLFRNFEIAT------------------------RKKYVDLVNSVKDSGGTAHIFSSMHFSG 353 (378)
Q Consensus 298 ~V~~A~e~GAV~tLLI~d~l~r~~d~~~------------------------r~~~~~lve~v~~~g~~V~ivs~~~~~G 353 (378)
.+.+.++...++.|+++=+++-...... .+.+.++++...+.+..|++++.+|+..
T Consensus 23 ~~l~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~~~~pv~~v~GNHD~~ 102 (260)
T 2yvt_A 23 KLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAP 102 (260)
T ss_dssp HHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSCC
T ss_pred HHHHHHHhcCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCCCch
Confidence 3344444456788999988864432210 1234556666666788999999999964
No 68
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=20.59 E-value=83 Score=27.31 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=33.4
Q ss_pred EEEEecCccccchhHhHHHHHHHHHHHHccCCEEEEECCCCC
Q 042331 310 TLLITDDLFRNFEIATRKKYVDLVNSVKDSGGTAHIFSSMHF 351 (378)
Q Consensus 310 tLLI~d~l~r~~d~~~r~~~~~lve~v~~~g~~V~ivs~~~~ 351 (378)
.+|+.||-+.+-|+..+..+.+++....+.|..|.+++.+.+
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 588999998888999999999977766656788888886543
Done!